RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1897
(473 letters)
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 448 bits (1152), Expect = e-154
Identities = 209/463 (45%), Positives = 301/463 (65%), Gaps = 9/463 (1%)
Query: 16 YASKHRHILNNIEEFWFYVQSEVRKLKKSNAVD----VDKILDLTSQFKRSLMTDMEELG 71
+ R I N +E WF++QSE++KLK + D+ L +RS+MTD+ L
Sbjct: 50 HEILRRRIENGAKELWFFLQSELKKLKNLEGNELQRHADEFLLDLGHHERSIMTDLYYLS 109
Query: 72 TLAGGDTLAERQNRRLGELVQARLRHIQNPRDCKTARKVSCQINWACGFGCQLHHVTYCL 131
G E++ + L ELVQ R+ ++QNP+DC A+K+ C IN CG+GCQLHHV YC
Sbjct: 110 QTDGAGDWREKEAKDLTELVQRRITYLQNPKDCSKAKKLVCNINKGCGYGCQLHHVVYCF 169
Query: 132 IIAYATNRTLVLDSTGWNYHSGGWEEMFEPLSQTCRTATEGSVIYWP--DHKPDKQIIKL 189
+IAY T RTL+L+S W Y +GGWE +F P+S+TC + S +W + Q+++L
Sbjct: 170 MIAYGTQRTLILESQNWRYATGGWETVFRPVSETCTDRSGISTGHWSGEVKDKNVQVVEL 229
Query: 190 ASQTYSLSGPGFIPRAVPQDIAQEL--IHGEPIVWWVGQIVKYIFKPNAKVRAMLSHHAQ 247
P ++P AVP+D+A L +HG+P VWWV Q VKY+ +P + + +
Sbjct: 230 PIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKYLIRPQPWLEKEIEEATK 289
Query: 248 QIGFSHPVVGVHIRRTDK-GSEAAPHPIHEYMRHVEEYYAQLSLQVNVTERKVYVATDEK 306
++GF HPV+GVH+RRTDK G+EAA HPI EYM HVEE++ L+ ++ V +++VY+ATD+
Sbjct: 290 KLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRMQVDKKRVYLATDDP 349
Query: 307 GVIMEIRQKYPAYTILGDASTVEAASSDRRYSTAGLLGIITDLYFLSHSDYLVCTFSSQI 366
++ E + KYP Y + D S +A RY+ L G+I D++FLS +D+LVCTFSSQ+
Sbjct: 350 SLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLVCTFSSQV 409
Query: 367 CRIAYELLNTDHRDASLNFKSLDDIWFFAGQRDNIQLAVLDHTPQTADQIELRVGDEVKP 426
CR+AYE++ T H DAS NF SLDDI++F GQ + Q+A+ H P+TAD+I + GD +
Sbjct: 410 CRVAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPMEPGDIIGV 469
Query: 427 AGNHWDGFSRGTNLRTNRHGLYPSFKVISRVETYKFPTYPEVK 469
AGNHWDG+S+G N + R GLYPS+KV ++ET K+PTYPE +
Sbjct: 470 AGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETVKYPTYPEAE 512
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase;
1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A*
3six_A*
Length = 330
Score = 164 bits (416), Expect = 5e-47
Identities = 47/327 (14%), Positives = 99/327 (30%), Gaps = 33/327 (10%)
Query: 105 KTARKVSCQINWACGFGCQLHHVTYCLIIAYATNRTLVLDSTGWNYHSGGWE----EMFE 160
R V + GFG L + A T RTLV+D G Y + FE
Sbjct: 2 TKERFVISRRR--TGFGDCLWSLASAWSYAQRTGRTLVIDWRGSCYVEQPFSNAFPAFFE 59
Query: 161 PLSQTCRT----ATEGSVIYWPDHKPDKQIIKLASQT-YSLSGPGFIPRAVPQDI----- 210
P+ + + +P + + + F R ++
Sbjct: 60 PVEDIAGVPVICDDRVNQLSFPGPFFPRWWNRPSIDCINRPDEQIFRERDELTELFQARE 119
Query: 211 ---AQELIHGEPIVWWVGQIVKYIF----KPNAKVRAMLSHHAQQIGFSHPVVGVHIRRT 263
A ++ ++W + + + K +++RA + ++ H ++GVH+R
Sbjct: 120 DSEANTIVCDACLMWRCSEEAERLIFRNIKLRSEIRARIDALYEEHFSGHSIIGVHVRHG 179
Query: 264 DK----GSEAAPHPIHEYMRHVEEYYAQLSLQVNVTERKVYVATDEKGVIMEIRQKYPAY 319
+ + V + KV++ TD V+ ++ +P
Sbjct: 180 NGEDIMEHAPYWADSELALHQVCMAIRKAKALSYPKPVKVFLCTDSAQVLDQVSGLFPDV 239
Query: 320 TILGD--ASTVEAASSDRRYSTAGLLGIITDLYFLSHSDYLV-CTFSSQICRIAYELLNT 376
+ + G + D+Y L+ ++ +S R A L+
Sbjct: 240 FAVPKRFQADRAGPLHSAEMGIEGGASALIDMYLLARCATVIRFPPTSAFTRYARLLVPR 299
Query: 377 DH---RDASLNFKSLDDIWFFAGQRDN 400
+ +D+ + +
Sbjct: 300 IIEFDLSNPGHLTMIDNPYEHFAASHH 326
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 74.3 bits (182), Expect = 4e-14
Identities = 91/498 (18%), Positives = 155/498 (31%), Gaps = 163/498 (32%)
Query: 29 EFWFYVQSEVRKLKKSNAVDVDKILDLTSQFKRSLMTDMEELGTLAGG-----DTLAERQ 83
+F YV S V K V + ++F+ + ++ LA DT +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLC--LTEFENCYLEG-NDIHALAAKLLQENDTTLVKT 119
Query: 84 NRRLGELVQARL---RHIQNPRD---CKTARKVSCQINWACGFGCQLHHVTYC--LIIAY 135
+ + AR+ R + + + + Q+ A FG Q + Y L Y
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL-VAI-FGGQGNTDDYFEELRDLY 177
Query: 136 ATNRTLVLDSTGWNYHSGGWEEMFEPLSQTCRTATEGSVIY--------W---PDHKPDK 184
T LV D + E LS+ RT + ++ W P + PDK
Sbjct: 178 QTYHVLVGDLI---------KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 185 QIIKLASQTYSLSGP-----------------GFIPRAVPQDIAQELIHGEPIV------ 221
L S S P GF P + + H + +V
Sbjct: 229 DY--LLSIPISC--PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 222 ----W--WVGQIVKYIFKPNAKVRAMLSH---HAQQIGFSHPVVGVH---IRRTDKGSEA 269
W + + K I +L + ++P + + + + +E
Sbjct: 285 ETDSWESFFVSVRKAI--------TVLFFIGVRCYE---AYPNTSLPPSILEDSLENNEG 333
Query: 270 APHP-----------IHEYMRHVEEYYAQ-----LSLQVNVTERKVYVA---TDEKGVIM 310
P P + +Y+ + +SL VN + + V+ G+ +
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL-VN-GAKNLVVSGPPQSLYGLNL 391
Query: 311 EIRQKYPAYTILGDASTVEAASSDRRYSTAGLLGIITDLYFLS-----HSDYLVCTFSSQ 365
+R K A + L D S + S+R+ + FL HS L
Sbjct: 392 TLR-KAKAPSGL-DQSRIPF--SERK--------LKFSNRFLPVASPFHSHLL------- 432
Query: 366 ICRIAYELLNTDHRDASLNFKSLDDIWFFAGQRDNIQLAVLDHTPQTADQIELRVGDE-- 423
A +L+N D +++F + D IQ+ V D T D +LRV
Sbjct: 433 --VPASDLINKDLVKNNVSFNAKD-----------IQIPVYD----TFDGSDLRVLSGSI 475
Query: 424 ---------VKPAGNHWD 432
P W+
Sbjct: 476 SERIVDCIIRLPV--KWE 491
Score = 28.9 bits (64), Expect = 5.3
Identities = 26/161 (16%), Positives = 44/161 (27%), Gaps = 58/161 (36%)
Query: 11 KTNK--PYASKHRHI--LNNIEEFWFYV-----------QSEVRKLKKSNAVDVDKI--- 52
KTN P A K I +N + V +RK K + +D +I
Sbjct: 355 KTNSHLP-AGKQVEISLVNGAKNL---VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 53 ----------LDLTSQFKRSLMTDMEELGTLAGGDTLAERQNRRLGELVQARLR----HI 98
L + S F L+ +L + + + ++
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDL--------INKDLVKNNVSFNAKDIQIPVYDT 462
Query: 99 ---QNPRDCK---TARKVSC----QINW--ACGFGCQLHHV 127
+ R + R V C + W F H+
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA--THI 501
Score = 28.1 bits (62), Expect = 8.5
Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 51/141 (36%)
Query: 305 EKGVIMEIRQKYPAYTILGDASTV-EAASSDRRY-STAG--LLGIITD------LYFLSH 354
E+G+ M++ + A A V A D + T G +L I+ + ++F
Sbjct: 1628 EQGMGMDLYKTSKA------AQDVWNRA--DNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 355 SDYLVCTFSSQICRIAYELLNTDH-RDASLN----FKSLDDI---WFFAGQRDNIQLAVL 406
+ R Y + + D L FK +++ + F ++ +L
Sbjct: 1680 --------KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG-----LL 1726
Query: 407 DHTPQTADQIELRVGDEVKPA 427
T T Q PA
Sbjct: 1727 SATQFT--Q----------PA 1735
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 48.1 bits (115), Expect = 8e-08
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 404 AVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKV 453
A+ P+ D++EL V D + D + N+RT G++P++
Sbjct: 11 AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYA 60
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 44.5 bits (106), Expect = 1e-06
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 404 AVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPS 450
A+ P+ D++EL V D + D + N+RT G++P+
Sbjct: 8 AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPA 54
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 3e-06
Identities = 56/414 (13%), Positives = 114/414 (27%), Gaps = 139/414 (33%)
Query: 25 NNIEEFWFYVQSEVRKLKKSNAVDVDKILDLTSQFKRSLMTDMEELGTLAGGDTL-AERQ 83
I FW L N + +L++ + + + + L
Sbjct: 182 FKI--FW---------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 84 NRRLGELVQAR--------LRHIQNPRDCKTARKVSCQINWACGFGCQLHHVTYCLIIAY 135
L L++++ L ++QN + A C++ L+
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWN-----------AFNLSCKI------LLTTR 273
Query: 136 ATNRTLVLDSTGWNYHSGGWEEMFEPLSQTCRTATEGSVIYWPDHKPDKQIIKLASQTYS 195
T L + + S + L+ + ++ + D +P L + +
Sbjct: 274 FKQVTDFLSAATTTHISL--DHHSMTLTPD---EVKSLLLKYLDCRPQD----LPREVLT 324
Query: 196 LSGPGFIPRAVPQDIAQELIHGEPIVW--WVGQIVKYIFKPNAKVRAMLSHHAQQIGFSH 253
+ PR + IA E I W W K++
Sbjct: 325 TN-----PRRLSI-IA-ESIRDGLATWDNW-----KHVNCDK------------------ 354
Query: 254 PVVGVHIRRTDKGSEAAPHPIHEYMRHVEEYYAQLSL---QVNVTERKV------YVATD 304
+ + S P R + + +LS+ ++ + V
Sbjct: 355 ------LTTIIESSLNVLEP--AEYR---KMFDRLSVFPPSAHIPT-ILLSLIWFDVIKS 402
Query: 305 EKGVIM---------EIRQKYPAYTILG---------------DASTVEAASSDRRYSTA 340
+ V++ E + K +I S V+ + + + +
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 341 GLLGIITDLYFLSHSDYLVCTFSSQICRIAYELLNTDHRDASLNFKS--LDDIW 392
L+ D YF SH I + L N +H + F+ LD +
Sbjct: 463 DLIPPYLDQYFYSH--------------IGHHLKNIEHPERMTLFRMVFLDFRF 502
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 43.3 bits (102), Expect = 8e-06
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 404 AVLDHTPQTADQIELRVGDEV----KPAGNHWDGFSRGTNLRTNRHGLYPS 450
+ +TPQ D++EL GD + + +G+ GT+L T GL P
Sbjct: 21 VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPE 71
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG;
3.00A {Homo sapiens} PDB: 4ap6_A*
Length = 408
Score = 44.3 bits (104), Expect = 5e-05
Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 18/125 (14%)
Query: 250 GFSHPVVGVHIRRTD--KGSEAAPHPIHEYMRHVEEYYAQLSLQVNVTERKVYVATDEKG 307
P +GVH+RR D G + +R + L KV+VATD
Sbjct: 262 ALGGPYLGVHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRL------DKVFVATDAVR 315
Query: 308 VIMEIRQKYPAYTILGDASTVEAASSDRRYSTAGLLGIITDLYFLSHSDYLVC----TFS 363
E +K L + E + G + II D + +H+ + + TFS
Sbjct: 316 KEYEELKKL-----LPEMVRFEPTWEELELYKDGGVAII-DQWICAHARFFIGTSVSTFS 369
Query: 364 SQICR 368
+I
Sbjct: 370 FRIHE 374
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 39.9 bits (94), Expect = 8e-05
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 404 AVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPS 450
A+ + PQ D++ELR GD V DG+ G + RT + G +P
Sbjct: 12 AMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPG 58
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 34.5 bits (80), Expect = 0.006
Identities = 13/47 (27%), Positives = 30/47 (63%)
Query: 404 AVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPS 450
A+ ++ ++++L+ G+ ++ G + DG+ +G +L T R G++PS
Sbjct: 12 ALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPS 58
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 34.6 bits (80), Expect = 0.006
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 404 AVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPS 450
+ AD++ L+ D V DG+ G LR G +P
Sbjct: 22 ITKAFFAKQADEVTLQQADVVLVLQQE-DGWLYGERLRDGETGWFPE 67
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 35.0 bits (80), Expect = 0.007
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 15/62 (24%)
Query: 404 AVLDHTPQTADQIELRVGD--EVKPAGNHWDGFS-------------RGTNLRTNRHGLY 448
A+ + + +EL GD V A G + G N RT + G +
Sbjct: 16 ALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDF 75
Query: 449 PS 450
P
Sbjct: 76 PG 77
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 33.3 bits (77), Expect = 0.011
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 404 AVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPS 450
A+ D P+ +++ L GD V + H G+ N ++ GL P
Sbjct: 6 ALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPE 52
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 33.5 bits (77), Expect = 0.014
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 404 AVLDHTP-QTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPS 450
A+L +T D+I GD DG+ TNLRT+ GL
Sbjct: 10 AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVE 57
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase;
glycosyltransferase, GT-B, catalytic mechanism,; HET:
GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A*
3zy5_A* 3zy6_A*
Length = 362
Score = 36.3 bits (83), Expect = 0.019
Identities = 22/121 (18%), Positives = 37/121 (30%), Gaps = 24/121 (19%)
Query: 252 SHPVVGVHIRRTDKGSEAAPHPIHEYMRHVEEYYAQLSLQVNVTERKVYVATDEKGVIME 311
S +G E + + + E + + V+VA+D+ +I E
Sbjct: 242 SEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIGA------KSVFVASDKDHMIDE 295
Query: 312 IRQKYPAYTILGDASTVEAASSDRRYSTAGLLGIITDLYFLSHSDYLVC----TFSSQIC 367
I + Y I D + T L + +D V TFS +
Sbjct: 296 INEALKPYEI----EAHRQEPDD----------MYTSLAIMGRADLFVGNCVSTFSHIVK 341
Query: 368 R 368
R
Sbjct: 342 R 342
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 33.0 bits (76), Expect = 0.022
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 404 AVLDHT-PQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPS 450
A+L +T D+I GD DG+ TNLRT+ GL
Sbjct: 12 AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVE 59
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 32.7 bits (75), Expect = 0.026
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 404 AVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPS 450
A+ D P+ +++ L GD V + H G+ N ++ GL P
Sbjct: 10 ALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPE 56
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 32.7 bits (75), Expect = 0.028
Identities = 11/54 (20%), Positives = 22/54 (40%)
Query: 397 QRDNIQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPS 450
Q + A+ D+ +T D + G++ + + + +L T G PS
Sbjct: 3 QISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPS 56
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain,
peptide complex, alternative splicing, disease mutation,
HOST-virus interaction, phosphoprotein, polymorphism;
1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A
1pks_A 1pkt_A
Length = 83
Score = 32.4 bits (73), Expect = 0.044
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 15/62 (24%)
Query: 404 AVLDHTPQTADQIELRVGDEVKPAGNHW---------------DGFSRGTNLRTNRHGLY 448
A+ D+ + + I+L +GD + G+ G N T G +
Sbjct: 10 ALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDF 69
Query: 449 PS 450
P
Sbjct: 70 PG 71
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 31.8 bits (73), Expect = 0.053
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 404 AVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPS 450
A+ D++ Q D++ R GD + DG+ GT RT R G+ P+
Sbjct: 11 AMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPA 57
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 30.4 bits (69), Expect = 0.18
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 404 AVLDHTP-QTADQIELRVGDEVK-PAGNHWDGFSRGTNLRTNRHGLYPS 450
A+ H + + + GD + DG+ G + +T G +P
Sbjct: 12 AIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPF 60
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 30.5 bits (69), Expect = 0.20
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 404 AVLDHTPQTADQIELRVGDEV----KPAGNHWDGFSRGTNLRTNRHGLYPS 450
+ ++Q+ L G + K W G + + + G +P+
Sbjct: 12 VTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQK-GWFPA 61
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 30.0 bits (68), Expect = 0.24
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 404 AVLDHTPQT-ADQIELRVGDEVK-PAGNHWDGFSRGTNLRTNRHGLYPS 450
+ HT + GD + DG+ G + T G +PS
Sbjct: 12 TIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPS 60
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 29.2 bits (66), Expect = 0.46
Identities = 11/56 (19%), Positives = 22/56 (39%)
Query: 395 AGQRDNIQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPS 450
G + +A+ D+ T D + G++ + + + +L T G PS
Sbjct: 11 GGTGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPS 66
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 29.4 bits (66), Expect = 0.56
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 404 AVLDHTPQT-ADQIELRVGDEV----KPAGNHWDGFSRGTNLRTNRHGLYPS--FKVISR 456
A+ D + +R GD + + W G + T+R G +P +V+S+
Sbjct: 23 ALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVSK 82
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 29.0 bits (65), Expect = 0.87
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Query: 404 AVLDHTPQTADQIELRVGDEV----KPAGNHWDGFSRGTNLRTNRHGLYPS 450
+ PQ D++EL+VGD + + W+G G + G++PS
Sbjct: 23 VAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNG------KTGMFPS 67
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 28.9 bits (65), Expect = 0.87
Identities = 7/44 (15%), Positives = 14/44 (31%)
Query: 407 DHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPS 450
D+ + G++ + + +L T G PS
Sbjct: 14 DYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPS 57
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 27.9 bits (63), Expect = 1.1
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 407 DHTPQTADQIELRVGDEV----KPAGNHWDGFSRGTNLRTNRHGLYPS 450
+ + D+I + GD++ + G+ W ++ N T GL P+
Sbjct: 9 AYVQKDDDEITITPGDKISLVARDTGSGW---TKINNDTTGETGLVPT 53
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 28.0 bits (63), Expect = 1.1
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 404 AVLDHTPQ-TADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPS 450
A D ++ ++ L+ GD V + + G+S L ++ G P+
Sbjct: 7 AAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPT 54
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 28.5 bits (64), Expect = 1.2
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 7/51 (13%)
Query: 404 AVLDHTPQTADQIELRVGDEV----KPAGNHWDGFSRGTNLRTNRHGLYPS 450
+HT ++ R GD V W R + + + GL +
Sbjct: 22 TKCEHTRPKPGELAFRKGDVVTILEACENKSW---YRVKHHTSGQEGLLAA 69
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 27.9 bits (63), Expect = 1.3
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 10/51 (19%)
Query: 404 AVLDHTPQTADQIELRVGDEV----KPAGNHWDGFSRGTNLRTNRHGLYPS 450
+ P+T +++++ G+ V K N G + GL P
Sbjct: 12 VLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNG------QKGLVPC 56
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 27.6 bits (62), Expect = 1.6
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Query: 404 AVLDHTPQTADQIELRVGDEV----KPAGNHWDGFSRGTNLRTNRHGLYPS 450
+ ++ PQ D++EL+VGD + + W G + GL+PS
Sbjct: 12 VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNN------KLGLFPS 56
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.8
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 6/21 (28%)
Query: 171 EGSV-IYWPDHKPDKQIIKLA 190
+ S+ +Y D P LA
Sbjct: 26 QASLKLYADDSAP-----ALA 41
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 27.3 bits (61), Expect = 2.4
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 404 AVLDHTPQTA-DQIELRVGDEVK-PAGNHWDGFSRGTNLRTNRHGLYPS 450
+ HT + + GD + DG+ G + + G +PS
Sbjct: 11 TIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPS 59
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 26.8 bits (60), Expect = 2.4
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 404 AVLDHTPQT-ADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPS 450
A D ++ L+ GD + G+S G L ++ G P+
Sbjct: 5 AAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPT 52
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural
genomics, epimerase, PSI, structure initiative; 1.60A
{Streptococcus pyogenes} SCOP: c.1.2.5
Length = 234
Score = 29.1 bits (65), Expect = 2.8
Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 15/104 (14%)
Query: 252 SHPVVGVHIRRTDKGSEAAPHPIHEYMRHVEEYYAQLSLQVNV-----TERKVYVATDEK 306
P++G+ I++ E M V+ +L + V T+R + D
Sbjct: 69 DLPIIGI-IKKDYPPQEPFITA---TMTEVD---QLAALNIAVIAMDCTKRDRHDGLDIA 121
Query: 307 GVIMEIRQKYPAYTILGDASTVEAASSDRRYSTAGLLGIITDLY 350
I ++++KYP ++ D ST + AG+ + T L
Sbjct: 122 SFIRQVKEKYPNQLLMADISTFDEG---LVAHQAGIDFVGTTLS 162
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 28.1 bits (62), Expect = 2.9
Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 13/77 (16%)
Query: 404 AVLDHTPQTADQIELRVGDEV----KPAGNH---WDG--FSRGTNLRTNRHGLYPSFKVI 454
A+ D+ + + G V K G W G R G +PS
Sbjct: 27 ALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPS---- 82
Query: 455 SRVETYKFPTYPEVKLP 471
S V + +V +
Sbjct: 83 SIVREDQTLKPGKVDVK 99
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 27.3 bits (61), Expect = 4.2
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 165 TCR--TATEGSVIYWPDHKPDKQIIKLASQTYSLSGPGFIPR 204
TC +E ++ W P Q K A+ + LS P R
Sbjct: 20 TCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDAR 61
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 27.7 bits (61), Expect = 4.3
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 404 AVLDHTPQTADQIELRVGDEV---KPAGNHWDGFSRGTNLRTNRHGLYPS 450
A+ + A Q+ L++GD V + G+ + G+ G++P
Sbjct: 64 AIYNFQGSGAPQLSLQIGDVVRIQETCGDWYRGYLIKHK---MLQGIFPK 110
>2pcr_A Inositol-1-monophosphatase; bipolar disorder, struct genomics,
NPPSFA, national project on protein structural AN
functional analyses; 2.60A {Aquifex aeolicus}
Length = 264
Score = 28.7 bits (65), Expect = 4.4
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 305 EKGVIMEIRQKYPAYTILGDASTVEAASSDRR 336
E+ + I + +P + ++G+ E + S+ R
Sbjct: 51 EERIKEVILKFFPDHEVVGEEMGAEGSGSEYR 82
>3ryd_A Inositol monophosphatase family protein; impase fold, FIG
superfamily protein, hydrolase; HET: SRT; 2.37A
{Staphylococcus aureus} PDB: 3qmf_A
Length = 273
Score = 28.4 bits (64), Expect = 5.1
Identities = 7/92 (7%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 253 HPVVGVHIRRTDKGSEAAPHPIHEYMRHVEEYYAQLSLQVNVTERKV---YV-ATD---E 305
H + + + + +++ ++ QL +++ ++ V D +
Sbjct: 4 HHHHHMTDKTLQQIDKLI----CSWLKQIDNVIPQLIMEMTTETKRHRFDLVTNVDKQIQ 59
Query: 306 KGVIMEIRQKYPAYTILGDASTVEAASSDRRY 337
+ + +P + +L + + +++ +
Sbjct: 60 QQFQQFLATYFPEHQLLAEEKSNAMITNEINH 91
>1z3i_X Similar to RAD54-like; recombination ATPase helicase,
recombination-DNA binding COM; 3.00A {Danio rerio} SCOP:
c.37.1.19 c.37.1.19
Length = 644
Score = 28.4 bits (64), Expect = 6.7
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 3 KNPNVLDLKTNKPYASKHRHIL------NNIEEFW 31
KN + ++ R ++ N++ E++
Sbjct: 205 KNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYF 239
>2bji_A Inositol-1(OR 4)-monophosphatase; hydrolase, aspartic proteinase
mechanism, aspartyl protease, succinimide, zymogen;
1.30A {Bos taurus} PDB: 1imb_A* 1ima_A* 1imc_A 1imd_A
1ime_A 1imf_A 2hhm_A 1awb_A
Length = 277
Score = 27.6 bits (62), Expect = 8.7
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 7/32 (21%)
Query: 294 VTE--RKVYVATDEKGVIMEIRQKYPAYTILG 323
VT +KV EK +I I++KYP+++ +G
Sbjct: 43 VTATDQKV-----EKMLITSIKEKYPSHSFIG 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.418
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,341,460
Number of extensions: 438366
Number of successful extensions: 965
Number of sequences better than 10.0: 1
Number of HSP's gapped: 942
Number of HSP's successfully gapped: 53
Length of query: 473
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 376
Effective length of database: 3,993,456
Effective search space: 1501539456
Effective search space used: 1501539456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)