RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1897
(473 letters)
>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 36.7 bits (85), Expect = 3e-04
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 404 AVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPS 450
A+ D+ AD++ + GD + +G+ GT RT R G+ P+
Sbjct: 8 AMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPA 54
>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 58
Score = 36.7 bits (85), Expect = 3e-04
Identities = 9/47 (19%), Positives = 18/47 (38%)
Query: 404 AVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPS 450
A D+ +++ D++ D + G + GL+PS
Sbjct: 5 AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPS 51
>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 64
Score = 36.7 bits (85), Expect = 4e-04
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 404 AVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPS 450
A+ D+ +T + + G+ ++ N + +L T + G PS
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPS 53
>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 57
Score = 35.9 bits (83), Expect = 6e-04
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 404 AVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPS 450
A+ D+ T D + G++ + + + +L T G PS
Sbjct: 5 ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPS 51
>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha
subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 34.4 bits (78), Expect = 0.003
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 17/73 (23%)
Query: 404 AVLDHTPQTADQIELRVGDEVKPAGNHW---------------DGFSRGTNLRTNRHGLY 448
A+ D+ + + I+L +GD + G+ G N T G +
Sbjct: 8 ALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDF 67
Query: 449 PS--FKVISRVET 459
P + I R +
Sbjct: 68 PGTYVEYIGRKKI 80
>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 34.1 bits (78), Expect = 0.003
Identities = 7/47 (14%), Positives = 13/47 (27%)
Query: 404 AVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPS 450
A + + GD + D + R G+ P+
Sbjct: 11 AKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPA 57
>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 69
Score = 33.7 bits (77), Expect = 0.004
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 404 AVLDHTPQTADQIELRVGDEVKPAGNHW-DGFSRGTNLRTNRHGLYPS 450
+ + L GD V+ + G N TN G +P
Sbjct: 15 GIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPC 62
>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA
1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 72
Score = 32.9 bits (75), Expect = 0.010
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 404 AVLDHTPQT-ADQIELRVGDEVK-PAGNHWDGFSRGTNLRTNRHGLYPS 450
+ HT + GD + DG+ G + T G +PS
Sbjct: 12 TIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPS 60
>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 32.7 bits (74), Expect = 0.016
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 2/70 (2%)
Query: 404 AVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPS--FKVISRVETYK 461
A+ + D++ GD ++ G +P + + E K
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSENEK 69
Query: 462 FPTYPEVKLP 471
+ + LP
Sbjct: 70 AVSPKKALLP 79
>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 58
Score = 28.2 bits (63), Expect = 0.26
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 404 AVLDHTPQTADQIELRVGD--EVKPAGNHWDGFSRGTNLRTNRHGLYPS 450
A+ + + + R GD + + + + G R G++P+
Sbjct: 6 ALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRV--NGREGIFPA 52
>d1dzla_ b.121.6.1 (A:) Papillomavirus L1 protein {Human
papillomavirus type 16 [TaxId: 333760]}
Length = 455
Score = 30.8 bits (70), Expect = 0.41
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 274 IHEYMRHVEEYYAQLSLQV 292
EY+RH EEY Q Q+
Sbjct: 341 FKEYLRHGEEYDLQFIFQL 359
>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 74
Score = 28.2 bits (63), Expect = 0.41
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 9/50 (18%)
Query: 404 AVLDHTPQTADQIELRVGDEV---KPAGNHWDGFSRGTNLRTNRHGLYPS 450
A+ T + + + D + + N W G G G +P
Sbjct: 15 ALCSWTAKKDNHLNFSKHDIITVLEQQENWWFGEVHG------GRGWFPK 58
>d2bvla1 c.68.1.22 (A:1-542) Toxin B {Clostridium difficile
[TaxId: 1496]}
Length = 542
Score = 29.1 bits (65), Expect = 1.2
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 10 LKTNKPYASKHRHILNNIEEFWFYVQSEVRKLKKSNAVDVDKIL 53
+ +++ + E Y+ +EV +LK +N V+K L
Sbjct: 59 CIDTYKKSGRNKALKKFKE----YLVTEVLELKNNNLTPVEKNL 98
>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 96
Score = 27.0 bits (59), Expect = 1.5
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 9/73 (12%)
Query: 404 AVLDHTPQTADQ-----IELRVGDEV----KPAGNHWDGFSRGTNLRTNRHGLYPSFKVI 454
A+ D+ + R GD + W ++ T+ G PS + +
Sbjct: 6 ALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRV 65
Query: 455 SRVETYKFPTYPE 467
R E +
Sbjct: 66 ERREWSRLKAKDW 78
>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein,
GcvT {Escherichia coli [TaxId: 562]}
Length = 90
Score = 25.9 bits (57), Expect = 4.0
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 171 EGSVIYWPDHKPDKQIIKLASQTYSLSGPGFIPRA-VPQDIAQEL---IHGEPIVWWVGQ 226
+ + D + ++ + S T+S + I A VP+ I + I + +
Sbjct: 17 NELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGIGETAIVQIRNREM---PVK 73
Query: 227 IVKYIFKPNAK 237
+ K +F N K
Sbjct: 74 VTKPVFVRNGK 84
>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 211
Score = 26.8 bits (59), Expect = 4.4
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 8/56 (14%)
Query: 180 HKPDKQIIKLASQTYSLSGPGFIPRAVPQDIAQELIHGEPIVWWVGQIVKYIFKPN 235
KP K I L + GFI +DIA+ L + + I + P+
Sbjct: 24 EKPKKGIPMLIEK-------GFIASDSDKDIAEFLFNNNNRMNKK-TIGLLLCHPD 71
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 117
Score = 25.9 bits (57), Expect = 5.5
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 8/77 (10%)
Query: 36 SEVRKLKK--SNAVDVDKILDLTSQFKRSLMTDMEEL-----GTLAGGDTLAERQNRRLG 88
SE RK+ + + D IL + L + +L G LA++ L
Sbjct: 42 SEARKVAELCEEPKERDDILRSLGEISA-LTAKLSDLRRHGKGDSPEARALAKQIATSLQ 100
Query: 89 ELVQARLRHIQNPRDCK 105
L R + N R K
Sbjct: 101 NLQSKTNRAVANTRPVK 117
>d1v9fa_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine
synthase D, RluD {Escherichia coli [TaxId: 562]}
Length = 250
Score = 26.4 bits (57), Expect = 6.5
Identities = 20/184 (10%), Positives = 40/184 (21%), Gaps = 10/184 (5%)
Query: 88 GELVQARLRHIQNPRDCKTARKVSCQINWACGFGCQLHHVTYCLIIAYATNRTLVLDSTG 147
G ++ A L + D A V G V + + R +
Sbjct: 37 GTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYE 96
Query: 148 WNYHSGGWEEMFEPLSQTCRTATEGSVIYWPDHKPDKQIIKLASQTYSLSGPGFIP---- 203
+ + P KP ++ +
Sbjct: 97 AVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGR 156
Query: 204 RAVPQDIAQELIHGEPIVWWVGQIVKYIFKPNAKVRAMLSH------HAQQIGFSHPVVG 257
+ + H G + + + L HA + HP+ G
Sbjct: 157 THQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISG 216
Query: 258 VHIR 261
+ +
Sbjct: 217 IEME 220
>d1h3ga1 b.1.18.2 (A:3-95) Cyclomaltodextrinase, N-terminal domain
{Flavobacterium sp. 92 [TaxId: 197856]}
Length = 93
Score = 25.1 bits (55), Expect = 6.7
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 16/63 (25%)
Query: 207 PQDIAQELIHGEPIVWWVGQIVKYIFKPNAKVRAMLSHHAQQIGFSHPVV---GVHIRRT 263
P I H EP WW G + ++ M+ H + IG + GV + T
Sbjct: 1 PTAIE----HMEPPFWWAGM-------QHKGLQLMV--HGRDIGRMEAALDYPGVRLVST 47
Query: 264 DKG 266
+
Sbjct: 48 TRV 50
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.418
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,799,322
Number of extensions: 82859
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 24
Length of query: 473
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 384
Effective length of database: 1,185,626
Effective search space: 455280384
Effective search space used: 455280384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)