BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1898
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PDN|C Chain C, Crystal Structure Of A Paired Domain-Dna Complex At 2.5
Angstroms Resolution Reveals Structural Basis For Pax
Developmental Mutations
Length = 128
Score = 206 bits (524), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/118 (81%), Positives = 115/118 (97%), Gaps = 1/118 (0%)
Query: 87 VNQLGGVFINGRPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 146
VNQLGGVFINGRPLPN+IRLKIVEMAA G+RPCVISRQLRVSHGCVSKILNRYQETGSIR
Sbjct: 5 VNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIR 64
Query: 147 PGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSIS 204
PGVIGGSKPR+ATP++E RIEEYK+++PG+FSWEIR++L++ +G+CD+++APSVS+IS
Sbjct: 65 PGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIR-EGVCDRSTAPSVSAIS 121
>pdb|1K78|A Chain A, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K78|E Chain E, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K78|I Chain I, Pax5(1-149)+ets-1(331-440)+dna
pdb|1MDM|A Chain A, Inhibited Fragment Of Ets-1 And Paired Domain Of Pax5
Bound To Dna
Length = 149
Score = 177 bits (448), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 105/127 (82%), Gaps = 2/127 (1%)
Query: 79 RQLRVSHG-VNQLGGVFINGRPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILN 137
R R HG VNQLGGVF+NGRPLP+ +R +IVE+A GVRPC ISRQLRVSHGCVSKIL
Sbjct: 11 RTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILG 70
Query: 138 RYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSA 197
RY ETGSI+PGVIGGSKP+VATP V ++I EYK+ NP +F+WEIRDRL+ + +CD ++
Sbjct: 71 RYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAER-VCDNDTV 129
Query: 198 PSVSSIS 204
PSVSSI+
Sbjct: 130 PSVSSIN 136
>pdb|2K27|A Chain A, Solution Structure Of Human Pax8 Paired Box Domain
Length = 159
Score = 173 bits (438), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 84/125 (67%), Positives = 104/125 (83%), Gaps = 2/125 (1%)
Query: 81 LRVSHG-VNQLGGVFINGRPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRY 139
+R HG +NQLGG F+NGRPLP +R +IV++A GVRPC ISRQLRVSHGCVSKIL RY
Sbjct: 6 IRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRY 65
Query: 140 QETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPS 199
ETGSIRPGVIGGSKP+VATP V ++I +YK+ NP +F+WEIRDRL+ + G+CD ++ PS
Sbjct: 66 YETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAE-GVCDNDTVPS 124
Query: 200 VSSIS 204
VSSI+
Sbjct: 125 VSSIN 129
>pdb|6PAX|A Chain A, Crystal Structure Of The Human Pax-6 Paired Domain-Dna
Complex Reveals A General Model For Pax Protein-Dna
Interactions
Length = 133
Score = 160 bits (404), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 78/118 (66%), Positives = 95/118 (80%), Gaps = 1/118 (0%)
Query: 86 GVNQLGGVFINGRPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQETGSI 145
GVNQLGGVF+NGRPLP+ R +IVE+A +G RPC ISR L+VS+GCVSKIL RY TGSI
Sbjct: 4 GVNQLGGVFVNGRPLPDSTRQRIVELAHSGARPCDISRILQVSNGCVSKILGRYYATGSI 63
Query: 146 RPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSI 203
RP IGGSKPRVATP+V +I +YK+ P IF+WEIRDRL+ +G+C ++ PSVSSI
Sbjct: 64 RPRAIGGSKPRVATPEVVSKIAQYKQECPSIFAWEIRDRLLS-EGVCTNDNIPSVSSI 120
>pdb|2E1Q|A Chain A, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|B Chain B, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|C Chain C, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|D Chain D, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
Length = 1333
Score = 31.6 bits (70), Expect = 0.42, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 75 CVISRQLRVSHGV---NQLGG---VFINGRPLPNH--------IRLKIVEMAAAGVRPCV 120
C+I + +S V NQ G V+ +G L H + K+V++A+ ++ +
Sbjct: 1000 CIIPTKFGISFTVPFLNQAGALLHVYTDGSVLLTHGGTEMGQGLHTKMVQVASRALK--I 1057
Query: 121 ISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSWE 180
+ ++ +S + + N S+ + G A + KR+E YKK NP SWE
Sbjct: 1058 PTSKIYISETSTNTVPNTSPTAASVSAD-LNGQAVYAACQTILKRLEPYKKKNPS-GSWE 1115
>pdb|2CKJ|A Chain A, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|B Chain B, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|C Chain C, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|D Chain D, Human Milk Xanthine Oxidoreductase
Length = 1333
Score = 31.6 bits (70), Expect = 0.42, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 75 CVISRQLRVSHGV---NQLGG---VFINGRPLPNH--------IRLKIVEMAAAGVRPCV 120
C+I + +S V NQ G V+ +G L H + K+V++A+ ++ +
Sbjct: 1000 CIIPTKFGISFTVPFLNQAGALLHVYTDGSVLLTHGGTEMGQGLHTKMVQVASRALK--I 1057
Query: 121 ISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSWE 180
+ ++ +S + + N S+ + G A + KR+E YKK NP SWE
Sbjct: 1058 PTSKIYISETSTNTVPNTSPTAASVSAD-LNGQAVYAACQTILKRLEPYKKKNPS-GSWE 1115
>pdb|2BIW|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Native Enzyme
pdb|2BIW|B Chain B, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Native Enzyme
pdb|2BIW|C Chain C, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Native Enzyme
pdb|2BIW|D Chain D, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Native Enzyme
pdb|2BIX|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Fe-Free Apoenzyme
pdb|2BIX|B Chain B, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Fe-Free Apoenzyme
Length = 490
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 86 GVNQLGGVFINGRPLPNHIRLKIVEMAAAGVRPCVISRQLR 126
G++ LGG+ G+PL H R+ G +PC ++ ++
Sbjct: 166 GLDDLGGILAEGQPLSAHPRIDPASTFDGG-QPCYVTFSIK 205
>pdb|1N5X|A Chain A, Xanthine Dehydrogenase From Bovine Milk With Inhibitor Tei-
6720 Bound
pdb|1N5X|B Chain B, Xanthine Dehydrogenase From Bovine Milk With Inhibitor Tei-
6720 Bound
Length = 1331
Score = 28.9 bits (63), Expect = 2.8, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 75 CVISRQLRVSHGV---NQLGG---VFINGRPLPNH--------IRLKIVEMAAAGVRPCV 120
C+I + +S V NQ G V+ +G L +H + K+V++A+ ++ +
Sbjct: 998 CIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALK--I 1055
Query: 121 ISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSWE 180
++ +S + + N S+ + G + A + KR+E +KK NP SWE
Sbjct: 1056 PISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYE-ACQTILKRLEPFKKKNPD-GSWE 1113
>pdb|3ETR|C Chain C, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3ETR|N Chain N, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3NS1|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NS1|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NVV|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVV|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVZ|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3NVZ|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
Length = 755
Score = 28.9 bits (63), Expect = 2.8, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 75 CVISRQLRVSHGV---NQLGG---VFINGRPLPNH--------IRLKIVEMAAAGVRPCV 120
C+I + +S V NQ G V+ +G L +H + K+V++A+ ++ +
Sbjct: 429 CIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALK--I 486
Query: 121 ISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSWE 180
++ +S + + N S+ + G + A + KR+E +KK NP SWE
Sbjct: 487 PISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYE-ACQTILKRLEPFKKKNPD-GSWE 544
>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1FO4|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1V97|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1V97|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1VDV|A Chain A, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|1VDV|B Chain B, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|3BDJ|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
A Covalently Bound Oxipurinol Inhibitor
pdb|3BDJ|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
A Covalently Bound Oxipurinol Inhibitor
pdb|3AM9|A Chain A, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AM9|B Chain B, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AMZ|A Chain A, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AMZ|B Chain B, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AX7|A Chain A, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX7|B Chain B, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX9|A Chain A, Bovine Xanthone Oxidase, Protease Cleaved Form
pdb|3AX9|B Chain B, Bovine Xanthone Oxidase, Protease Cleaved Form
Length = 1332
Score = 28.9 bits (63), Expect = 2.8, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 75 CVISRQLRVSHGV---NQLGG---VFINGRPLPNH--------IRLKIVEMAAAGVRPCV 120
C+I + +S V NQ G V+ +G L +H + K+V++A+ ++ +
Sbjct: 999 CIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALK--I 1056
Query: 121 ISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSWE 180
++ +S + + N S+ + G + A + KR+E +KK NP SWE
Sbjct: 1057 PISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYE-ACQTILKRLEPFKKKNPD-GSWE 1114
>pdb|3NRZ|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NRZ|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NVW|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVW|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVY|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVY|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
Length = 756
Score = 28.5 bits (62), Expect = 2.8, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 75 CVISRQLRVSHGV---NQLGG---VFINGRPLPNH--------IRLKIVEMAAAGVRPCV 120
C+I + +S V NQ G V+ +G L +H + K+V++A+ ++ +
Sbjct: 429 CIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALK--I 486
Query: 121 ISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSWE 180
++ +S + + N S+ + G + A + KR+E +KK NP SWE
Sbjct: 487 PISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYE-ACQTILKRLEPFKKKNPD-GSWE 544
>pdb|3EUB|C Chain C, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|L Chain L, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|U Chain U, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|4 Chain 4, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
Length = 762
Score = 28.5 bits (62), Expect = 2.8, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 75 CVISRQLRVSHGV---NQLGG---VFINGRPLPNH--------IRLKIVEMAAAGVRPCV 120
C+I + +S V NQ G V+ +G L +H + K+V++A+ ++ +
Sbjct: 429 CIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALK--I 486
Query: 121 ISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSWE 180
++ +S + + N S+ + G + A + KR+E +KK NP SWE
Sbjct: 487 PISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYE-ACQTILKRLEPFKKKNPD-GSWE 544
>pdb|3UNA|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nad Bound
pdb|3UNA|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nad Bound
pdb|3UNC|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNC|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNI|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nadh Bound
pdb|3UNI|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nadh Bound
Length = 1332
Score = 28.5 bits (62), Expect = 2.8, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 75 CVISRQLRVSHGV---NQLGG---VFINGRPLPNH--------IRLKIVEMAAAGVRPCV 120
C+I + +S V NQ G V+ +G L +H + K+V++A+ ++ +
Sbjct: 999 CIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALK--I 1056
Query: 121 ISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSWE 180
++ +S + + N S+ + G + A + KR+E +KK NP SWE
Sbjct: 1057 PISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYE-ACQTILKRLEPFKKKNPD-GSWE 1114
>pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase From Bovine Milk
pdb|3B9J|C Chain C, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
pdb|3B9J|K Chain K, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
Length = 763
Score = 28.5 bits (62), Expect = 2.8, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 75 CVISRQLRVSHGV---NQLGG---VFINGRPLPNH--------IRLKIVEMAAAGVRPCV 120
C+I + +S V NQ G V+ +G L +H + K+V++A+ ++ +
Sbjct: 430 CIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALK--I 487
Query: 121 ISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSWE 180
++ +S + + N S+ + G + A + KR+E +KK NP SWE
Sbjct: 488 PISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYE-ACQTILKRLEPFKKKNPD-GSWE 545
>pdb|3SR6|C Chain C, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
pdb|3SR6|L Chain L, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
Length = 745
Score = 28.5 bits (62), Expect = 2.9, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 75 CVISRQLRVSHGV---NQLGG---VFINGRPLPNH--------IRLKIVEMAAAGVRPCV 120
C+I + +S V NQ G V+ +G L +H + K+V++A+ ++ +
Sbjct: 429 CIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALK--I 486
Query: 121 ISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSWE 180
++ +S + + N S+ + G + A + KR+E +KK NP SWE
Sbjct: 487 PISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYE-ACQTILKRLEPFKKKNPD-GSWE 544
>pdb|1KMO|A Chain A, Crystal Structure Of The Outer Membrane Transporter Feca
Length = 774
Score = 28.5 bits (62), Expect = 2.9, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 93 VFINGRPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRY 139
VF PL N IRL ++ +A G+ + Q+ ++ G + K LN+Y
Sbjct: 6 VFRKTTPLVNTIRLSLLPLA--GLSFSAFAAQVNIAPGSLDKALNQY 50
>pdb|1KMP|A Chain A, Crystal Structure Of The Outer Membrane Transporter Feca
Complexed With Ferric Citrate
Length = 774
Score = 28.5 bits (62), Expect = 3.0, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 93 VFINGRPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRY 139
VF PL N IRL ++ +A G+ + Q+ ++ G + K LN+Y
Sbjct: 6 VFRKTTPLVNTIRLSLLPLA--GLSFSAFAAQVNIAPGSLDKALNQY 50
>pdb|2PMB|A Chain A, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|B Chain B, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|C Chain C, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|D Chain D, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|3GH1|A Chain A, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|B Chain B, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|C Chain C, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|D Chain D, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
Length = 462
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 130 GCVSKILNRYQETGSIRPGVIGGSKPR------VATPDVEKRIEEYKKTNPGI 176
G + + Y+ G P +I P V PD+EKR+E + + GI
Sbjct: 199 GHAKQRYSEYRYLGLTEPSIIAAEPPNPIVNELVIXPDIEKRLEAFVRXAHGI 251
>pdb|3CHX|A Chain A, Crystal Structure Of Methylosinus Trichosporium Ob3b
Particulate Methane Monooxygenase (Pmmo)
pdb|3CHX|E Chain E, Crystal Structure Of Methylosinus Trichosporium Ob3b
Particulate Methane Monooxygenase (Pmmo)
pdb|3CHX|I Chain I, Crystal Structure Of Methylosinus Trichosporium Ob3b
Particulate Methane Monooxygenase (Pmmo)
Length = 392
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 17/63 (26%)
Query: 64 IVEMAAAGVRPCVISRQLRVSHGVNQLGGVF-INGRPLPNHIR--------LKIVEMAAA 114
I+E AGV P V++ +L+ GGV+ + GR L ++ LK+ E AA
Sbjct: 243 IIEEGTAGVGPHVVTAELK--------GGVYKVPGRELTIQVKVTNKTDEPLKLGEYTAA 294
Query: 115 GVR 117
G+R
Sbjct: 295 GLR 297
>pdb|3BQ9|A Chain A, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Idiomarina Baltica Os145
pdb|3BQ9|B Chain B, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Idiomarina Baltica Os145
Length = 460
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 143 GSIRPGVIGGSKPR------VATPDVEKRIEEYKKTNPGI 176
G PG+I P V PD+EKR+E + + GI
Sbjct: 210 GLTEPGIIAAEPPNPIVNELVILPDIEKRLEAFVRCAHGI 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,266,206
Number of Sequences: 62578
Number of extensions: 235672
Number of successful extensions: 675
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 31
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)