Query psy1898
Match_columns 230
No_of_seqs 250 out of 1182
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 19:03:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pdn_C Protein (PRD paired); p 99.8 8.1E-21 2.8E-25 145.3 11.1 124 87-211 5-128 (128)
2 1k78_A Paired box protein PAX5 99.8 4.2E-19 1.4E-23 141.1 15.5 123 86-213 19-145 (149)
3 2k27_A Paired box protein PAX- 99.8 3E-18 1E-22 137.9 13.3 126 87-213 13-138 (159)
4 1u78_A TC3 transposase, transp 99.7 9.9E-16 3.4E-20 119.4 11.6 102 97-212 4-105 (141)
5 3hot_A Transposable element ma 99.4 2.3E-12 7.9E-17 114.2 11.2 101 98-214 5-114 (345)
6 1pdn_C Protein (PRD paired); p 99.1 2.7E-11 9.4E-16 91.9 4.4 101 39-139 1-127 (128)
7 1k78_A Paired box protein PAX5 99.1 1.9E-10 6.6E-15 90.8 7.8 106 36-141 13-144 (149)
8 2k27_A Paired box protein PAX- 98.9 5E-09 1.7E-13 83.6 9.1 108 38-145 8-141 (159)
9 1tc3_C Protein (TC3 transposas 98.8 3.5E-09 1.2E-13 67.2 4.2 47 98-144 4-50 (51)
10 1hlv_A CENP-B, major centromer 98.6 5.8E-07 2E-11 69.1 12.7 111 97-211 5-131 (131)
11 2jn6_A Protein CGL2762, transp 98.5 7.7E-08 2.6E-12 70.7 5.0 47 98-144 4-52 (97)
12 2elh_A CG11849-PA, LD40883P; s 98.5 2.3E-07 7.9E-12 67.2 6.4 48 97-144 20-67 (87)
13 2glo_A Brinker CG9653-PA; prot 98.5 1.3E-07 4.5E-12 63.6 4.0 47 97-143 3-53 (59)
14 2rn7_A IS629 ORFA; helix, all 98.3 4E-07 1.4E-11 68.0 3.4 50 96-145 3-60 (108)
15 1u78_A TC3 transposase, transp 98.2 3.1E-06 1.1E-10 65.0 7.7 86 54-139 5-103 (141)
16 1jko_C HIN recombinase, DNA-in 98.1 9.2E-07 3.2E-11 56.4 2.0 42 99-140 5-46 (52)
17 4fcy_A Transposase; rnaseh, DD 98.0 3E-05 1E-09 72.6 10.5 104 103-211 32-156 (529)
18 2jrt_A Uncharacterized protein 97.7 5.3E-05 1.8E-09 56.1 5.1 51 96-146 29-80 (95)
19 2x48_A CAG38821; archeal virus 97.6 4.2E-05 1.4E-09 49.9 3.0 37 102-138 18-54 (55)
20 1iuf_A Centromere ABP1 protein 97.6 0.0017 5.9E-08 50.9 12.7 116 97-213 9-144 (144)
21 2pjp_A Selenocysteine-specific 97.4 3.7E-05 1.3E-09 58.8 1.0 100 103-213 7-110 (121)
22 2oa4_A SIR5; structure, struct 97.0 0.00046 1.6E-08 51.5 3.8 44 102-145 36-80 (101)
23 4dyq_A Gene 1 protein; GP1, oc 97.0 0.00054 1.8E-08 53.7 3.7 44 98-141 11-55 (140)
24 2ao9_A Phage protein; structur 97.0 0.00059 2E-08 54.7 4.0 42 97-138 21-71 (155)
25 2o8x_A Probable RNA polymerase 96.9 0.0012 4E-08 44.5 4.7 43 99-141 15-57 (70)
26 3jth_A Transcription activator 96.8 0.00042 1.4E-08 50.2 2.1 68 102-169 22-90 (98)
27 3pqk_A Biofilm growth-associat 96.8 0.00076 2.6E-08 49.2 3.4 48 102-149 22-70 (102)
28 3uj3_X DNA-invertase; helix-tu 96.8 0.00022 7.4E-09 58.3 0.0 45 98-142 141-185 (193)
29 1jhg_A Trp operon repressor; c 96.7 0.0015 5E-08 48.8 4.2 37 103-140 45-82 (101)
30 1jko_C HIN recombinase, DNA-in 96.7 0.0026 8.9E-08 39.8 4.8 48 154-214 2-49 (52)
31 3hug_A RNA polymerase sigma fa 96.6 0.0021 7.2E-08 46.2 4.5 41 100-140 38-78 (92)
32 1s7o_A Hypothetical UPF0122 pr 96.6 0.0025 8.5E-08 48.2 5.0 42 99-140 22-63 (113)
33 3cuo_A Uncharacterized HTH-typ 96.6 0.00072 2.5E-08 48.5 1.7 67 103-169 24-92 (99)
34 3f6o_A Probable transcriptiona 96.6 0.0006 2E-08 51.4 1.3 71 100-170 15-86 (118)
35 2kko_A Possible transcriptiona 96.6 0.00027 9.3E-09 52.6 -0.7 46 103-148 25-71 (108)
36 2jpc_A SSRB; DNA binding prote 96.5 0.0021 7E-08 42.3 3.7 36 106-141 4-39 (61)
37 2oqg_A Possible transcriptiona 96.5 0.0011 3.9E-08 48.8 2.6 68 103-170 21-89 (114)
38 2heo_A Z-DNA binding protein 1 96.5 0.0022 7.6E-08 43.8 3.5 45 103-147 10-57 (67)
39 1ku3_A Sigma factor SIGA; heli 96.4 0.0038 1.3E-07 42.8 4.7 42 99-140 10-55 (73)
40 2p5k_A Arginine repressor; DNA 96.4 0.0084 2.9E-07 39.6 6.2 44 164-213 8-51 (64)
41 1fse_A GERE; helix-turn-helix 96.4 0.0042 1.4E-07 42.1 4.8 42 98-140 10-51 (74)
42 2p7v_B Sigma-70, RNA polymeras 96.4 0.0032 1.1E-07 42.6 4.0 43 99-141 5-51 (68)
43 3frw_A Putative Trp repressor 96.3 0.0041 1.4E-07 46.8 4.6 39 102-140 45-83 (107)
44 1oyi_A Double-stranded RNA-bin 96.2 0.0037 1.3E-07 44.9 3.6 47 102-148 16-63 (82)
45 2htj_A P fimbrial regulatory p 96.2 0.0055 1.9E-07 42.9 4.6 42 105-146 2-45 (81)
46 1r1u_A CZRA, repressor protein 96.2 0.0023 7.8E-08 47.2 2.7 46 102-147 25-71 (106)
47 1tty_A Sigma-A, RNA polymerase 96.2 0.0058 2E-07 43.5 4.7 43 99-141 18-64 (87)
48 1p4w_A RCSB; solution structur 96.2 0.0065 2.2E-07 44.8 5.0 42 98-140 33-74 (99)
49 1xsv_A Hypothetical UPF0122 pr 96.2 0.0053 1.8E-07 46.2 4.5 42 99-140 25-66 (113)
50 3f6v_A Possible transcriptiona 96.2 0.00088 3E-08 53.1 0.1 72 100-171 55-127 (151)
51 1je8_A Nitrate/nitrite respons 96.2 0.0049 1.7E-07 43.5 4.0 42 99-141 21-62 (82)
52 2jsc_A Transcriptional regulat 96.1 0.0014 4.9E-08 49.4 1.2 48 101-148 19-67 (118)
53 1tc3_C Protein (TC3 transposas 96.1 0.02 6.9E-07 34.9 6.4 45 154-211 2-46 (51)
54 1u2w_A CADC repressor, cadmium 96.1 0.0024 8.2E-08 48.4 2.2 46 103-148 42-89 (122)
55 1b4a_A Arginine repressor; hel 96.1 0.014 5E-07 46.2 6.8 46 162-213 6-51 (149)
56 3kor_A Possible Trp repressor; 96.0 0.0061 2.1E-07 46.7 4.1 71 58-138 27-98 (119)
57 3plo_X DNA-invertase; resolvas 96.0 0.0012 4.1E-08 54.0 0.0 42 100-141 143-184 (193)
58 1y0u_A Arsenical resistance op 96.0 0.0039 1.3E-07 45.0 2.8 45 103-147 31-75 (96)
59 1qbj_A Protein (double-strande 95.9 0.0072 2.5E-07 43.1 3.9 46 101-146 8-58 (81)
60 1zx4_A P1 PARB, plasmid partit 95.9 0.0096 3.3E-07 49.2 5.2 48 96-143 4-53 (192)
61 3mzy_A RNA polymerase sigma-H 95.8 0.0081 2.8E-07 46.1 4.3 41 99-140 109-149 (164)
62 3c57_A Two component transcrip 95.8 0.013 4.5E-07 42.4 4.9 41 100-141 28-68 (95)
63 2rnj_A Response regulator prot 95.7 0.0078 2.7E-07 43.1 3.6 41 100-141 30-70 (91)
64 1qgp_A Protein (double strande 95.7 0.0058 2E-07 43.0 2.7 46 101-146 12-62 (77)
65 1x3u_A Transcriptional regulat 95.7 0.011 3.7E-07 40.7 4.1 40 101-141 18-57 (79)
66 2zkz_A Transcriptional repress 95.6 0.0031 1.1E-07 46.0 1.1 67 102-169 26-94 (99)
67 3e7l_A Transcriptional regulat 95.6 0.011 3.9E-07 39.6 3.8 37 104-140 20-57 (63)
68 1g2h_A Transcriptional regulat 95.6 0.014 4.7E-07 39.0 4.2 41 100-140 18-58 (61)
69 2vz4_A Tipal, HTH-type transcr 95.5 0.027 9.3E-07 41.7 6.1 68 115-186 1-69 (108)
70 1gdt_A GD resolvase, protein ( 95.5 0.016 5.4E-07 46.7 4.9 33 106-138 149-181 (183)
71 3ic7_A Putative transcriptiona 95.4 0.048 1.7E-06 41.5 7.3 100 98-208 10-118 (126)
72 3ulq_B Transcriptional regulat 95.4 0.018 6.1E-07 41.5 4.6 41 99-140 29-69 (90)
73 1or7_A Sigma-24, RNA polymeras 95.4 0.015 5.2E-07 46.2 4.6 42 100-141 141-182 (194)
74 1r1t_A Transcriptional repress 95.3 0.0053 1.8E-07 46.6 1.6 45 103-147 46-91 (122)
75 1q06_A Transcriptional regulat 95.3 0.074 2.5E-06 41.0 8.0 68 116-187 1-69 (135)
76 2w7n_A TRFB transcriptional re 95.2 0.026 9E-07 41.9 5.0 39 104-142 22-61 (101)
77 2q1z_A RPOE, ECF SIGE; ECF sig 95.2 0.012 4.1E-07 46.4 3.3 42 100-141 136-177 (184)
78 1uxc_A FRUR (1-57), fructose r 95.1 0.027 9.3E-07 38.2 4.5 44 116-172 1-44 (65)
79 2jml_A DNA binding domain/tran 95.1 0.04 1.4E-06 38.6 5.5 69 116-187 6-76 (81)
80 1ntc_A Protein (nitrogen regul 95.1 0.018 6.1E-07 41.5 3.7 37 104-140 52-89 (91)
81 1umq_A Photosynthetic apparatu 95.0 0.015 5.2E-07 41.4 3.1 38 103-140 41-79 (81)
82 3neu_A LIN1836 protein; struct 95.0 0.086 3E-06 39.9 7.6 52 99-150 13-72 (125)
83 1ub9_A Hypothetical protein PH 95.0 0.017 5.7E-07 41.1 3.3 69 102-170 15-88 (100)
84 2l0k_A Stage III sporulation p 95.0 0.017 6E-07 42.2 3.3 36 102-137 6-42 (93)
85 1j9i_A GPNU1 DBD;, terminase s 94.9 0.0068 2.3E-07 41.2 1.0 23 116-138 3-25 (68)
86 2r0q_C Putative transposon TN5 94.9 0.017 6E-07 47.5 3.7 33 106-138 166-198 (209)
87 1rp3_A RNA polymerase sigma fa 94.8 0.029 1E-06 45.7 4.7 42 99-140 187-228 (239)
88 2fu4_A Ferric uptake regulatio 94.8 0.027 9.1E-07 39.2 3.8 44 103-146 17-69 (83)
89 2lkp_A Transcriptional regulat 94.8 0.016 5.4E-07 43.1 2.8 44 103-146 32-76 (119)
90 3gp4_A Transcriptional regulat 94.8 0.094 3.2E-06 40.9 7.4 68 116-187 3-71 (142)
91 2d1h_A ST1889, 109AA long hypo 94.7 0.03 1E-06 40.1 4.0 46 101-146 20-67 (109)
92 1r8d_A Transcription activator 94.7 0.067 2.3E-06 39.6 6.1 67 116-186 3-70 (109)
93 2jt1_A PEFI protein; solution 94.5 0.025 8.5E-07 39.9 3.0 45 103-147 4-56 (77)
94 1q1h_A TFE, transcription fact 94.4 0.029 9.8E-07 41.2 3.4 46 103-148 18-66 (110)
95 2l8n_A Transcriptional repress 94.4 0.033 1.1E-06 38.0 3.4 41 116-172 10-50 (67)
96 2cyy_A Putative HTH-type trans 94.3 0.055 1.9E-06 42.0 5.0 44 103-146 7-52 (151)
97 3t72_q RNA polymerase sigma fa 94.3 0.047 1.6E-06 40.2 4.3 41 100-140 20-64 (99)
98 3kz3_A Repressor protein CI; f 94.3 0.11 3.9E-06 35.5 6.1 25 113-137 23-47 (80)
99 2lfw_A PHYR sigma-like domain; 94.2 0.013 4.6E-07 45.7 1.2 43 99-141 93-135 (157)
100 3hot_A Transposable element ma 94.1 0.11 3.8E-06 45.0 7.1 79 57-138 8-109 (345)
101 2pn6_A ST1022, 150AA long hypo 94.1 0.054 1.9E-06 41.8 4.5 44 103-146 3-48 (150)
102 1rzs_A Antirepressor, regulato 94.1 0.015 5.2E-07 38.7 1.1 26 111-136 6-31 (61)
103 2cg4_A Regulatory protein ASNC 94.1 0.055 1.9E-06 42.0 4.5 43 103-145 8-52 (152)
104 2hin_A GP39, repressor protein 94.0 0.022 7.5E-07 39.6 1.9 21 117-137 12-32 (71)
105 2dbb_A Putative HTH-type trans 94.0 0.061 2.1E-06 41.6 4.6 43 103-145 9-53 (151)
106 2p5v_A Transcriptional regulat 94.0 0.058 2E-06 42.3 4.6 43 103-145 10-54 (162)
107 2cfx_A HTH-type transcriptiona 93.9 0.062 2.1E-06 41.4 4.6 43 103-145 5-49 (144)
108 3v4g_A Arginine repressor; vib 93.9 0.15 5.1E-06 41.6 6.9 49 159-213 31-80 (180)
109 1iuf_A Centromere ABP1 protein 93.8 0.044 1.5E-06 42.6 3.5 52 154-210 8-60 (144)
110 3lap_A Arginine repressor; arg 93.8 0.1 3.5E-06 42.2 5.7 47 161-213 20-66 (170)
111 1xn7_A Hypothetical protein YH 93.8 0.059 2E-06 38.0 3.8 41 106-146 5-47 (78)
112 2e1c_A Putative HTH-type trans 93.7 0.078 2.7E-06 42.4 5.0 44 103-146 27-72 (171)
113 3i4p_A Transcriptional regulat 93.7 0.068 2.3E-06 42.1 4.5 43 103-145 3-47 (162)
114 2b0l_A GTP-sensing transcripti 93.7 0.015 5.3E-07 42.9 0.6 45 105-149 30-77 (102)
115 3u1d_A Uncharacterized protein 93.7 0.03 1E-06 44.6 2.3 68 100-167 26-106 (151)
116 1eto_A FIS, factor for inversi 93.6 0.061 2.1E-06 39.5 3.8 37 104-140 59-96 (98)
117 3gpv_A Transcriptional regulat 93.6 0.18 6.1E-06 39.5 6.8 69 115-187 16-85 (148)
118 3hh0_A Transcriptional regulat 93.4 0.14 4.8E-06 40.1 5.8 69 115-187 4-73 (146)
119 3iuo_A ATP-dependent DNA helic 93.3 0.26 8.9E-06 37.4 7.1 92 103-206 20-112 (122)
120 2a6c_A Helix-turn-helix motif; 93.3 0.043 1.5E-06 38.2 2.5 35 103-137 18-53 (83)
121 2cw1_A SN4M; lambda CRO fold, 93.3 0.056 1.9E-06 36.8 2.9 23 116-138 14-36 (65)
122 2dg6_A Putative transcriptiona 93.3 0.5 1.7E-05 39.6 9.4 68 116-187 1-70 (222)
123 1neq_A DNA-binding protein NER 93.2 0.053 1.8E-06 37.6 2.8 32 105-136 11-43 (74)
124 2w25_A Probable transcriptiona 93.2 0.094 3.2E-06 40.5 4.6 43 103-145 7-51 (150)
125 3hrs_A Metalloregulator SCAR; 93.2 0.88 3E-05 37.4 10.8 94 115-217 20-126 (214)
126 1i1g_A Transcriptional regulat 93.2 0.084 2.9E-06 40.1 4.2 43 104-146 5-49 (141)
127 3b73_A PHIH1 repressor-like pr 93.2 0.13 4.3E-06 38.7 5.1 62 103-167 13-78 (111)
128 2q0o_A Probable transcriptiona 93.2 0.099 3.4E-06 43.4 4.9 42 98-140 174-215 (236)
129 1z4h_A TORI, TOR inhibition pr 93.1 0.035 1.2E-06 37.5 1.6 23 116-138 11-33 (66)
130 2k02_A Ferrous iron transport 93.1 0.067 2.3E-06 38.6 3.2 41 106-146 5-47 (87)
131 1r69_A Repressor protein CI; g 93.1 0.073 2.5E-06 34.9 3.2 25 113-137 12-36 (69)
132 1rr7_A Middle operon regulator 93.0 0.05 1.7E-06 42.0 2.6 50 93-142 70-119 (129)
133 2ia0_A Putative HTH-type trans 93.0 0.1 3.5E-06 41.7 4.6 43 103-145 17-61 (171)
134 2r1j_L Repressor protein C2; p 93.0 0.076 2.6E-06 34.6 3.2 25 113-137 16-40 (68)
135 3fmy_A HTH-type transcriptiona 93.0 0.077 2.6E-06 36.1 3.3 25 113-137 22-46 (73)
136 4ham_A LMO2241 protein; struct 92.9 0.35 1.2E-05 36.8 7.4 33 117-149 40-72 (134)
137 1zug_A Phage 434 CRO protein; 92.9 0.078 2.7E-06 34.9 3.2 25 113-137 14-38 (71)
138 2b5a_A C.BCLI; helix-turn-heli 92.9 0.037 1.3E-06 37.3 1.6 32 106-137 13-45 (77)
139 3tqn_A Transcriptional regulat 92.9 0.1 3.5E-06 38.7 4.1 52 99-150 9-68 (113)
140 2xi8_A Putative transcription 92.8 0.057 1.9E-06 35.0 2.3 25 113-137 12-36 (66)
141 1x57_A Endothelial differentia 92.7 0.12 4.2E-06 36.2 4.1 38 100-137 10-48 (91)
142 4dyq_A Gene 1 protein; GP1, oc 92.7 0.15 5E-06 39.6 4.9 47 152-210 7-53 (140)
143 3f6w_A XRE-family like protein 92.6 0.1 3.4E-06 35.8 3.6 32 106-137 17-49 (83)
144 3b7h_A Prophage LP1 protein 11 92.6 0.12 4.1E-06 34.7 3.9 35 103-137 7-42 (78)
145 1y7y_A C.AHDI; helix-turn-heli 92.6 0.11 3.7E-06 34.6 3.6 32 106-137 16-48 (74)
146 2wiu_B HTH-type transcriptiona 92.5 0.13 4.5E-06 35.5 4.1 35 103-137 12-47 (88)
147 1l3l_A Transcriptional activat 92.5 0.12 4E-06 42.9 4.4 42 98-140 172-213 (234)
148 2w48_A Sorbitol operon regulat 92.5 0.13 4.4E-06 44.9 4.8 42 105-146 10-52 (315)
149 2cob_A LCOR protein; MLR2, KIA 92.5 0.2 6.7E-06 34.7 4.7 41 97-137 11-52 (70)
150 2x4h_A Hypothetical protein SS 92.5 1.1 3.7E-05 33.5 9.6 33 115-147 31-63 (139)
151 3bd1_A CRO protein; transcript 92.4 0.087 3E-06 36.1 3.0 24 113-137 10-33 (79)
152 1l0o_C Sigma factor; bergerat 92.4 0.023 8E-07 46.2 0.0 41 100-140 199-239 (243)
153 1adr_A P22 C2 repressor; trans 92.4 0.1 3.5E-06 34.9 3.2 25 113-137 16-40 (76)
154 3omt_A Uncharacterized protein 92.4 0.065 2.2E-06 36.0 2.2 25 113-137 19-43 (73)
155 3clo_A Transcriptional regulat 92.4 0.15 5.3E-06 42.9 5.1 43 98-141 196-238 (258)
156 1uly_A Hypothetical protein PH 92.3 0.11 3.7E-06 42.5 3.9 44 103-146 20-64 (192)
157 2kpj_A SOS-response transcript 92.2 0.095 3.2E-06 37.2 3.1 34 104-137 10-44 (94)
158 3qq6_A HTH-type transcriptiona 92.1 0.088 3E-06 36.2 2.7 34 104-137 11-45 (78)
159 3by6_A Predicted transcription 92.1 0.54 1.9E-05 35.5 7.4 34 117-150 37-70 (126)
160 2k9q_A Uncharacterized protein 92.1 0.068 2.3E-06 36.3 2.0 25 113-137 13-37 (77)
161 2qq9_A Diphtheria toxin repres 92.0 1.3 4.4E-05 36.6 10.3 92 113-213 20-123 (226)
162 2pij_A Prophage PFL 6 CRO; tra 92.0 0.1 3.5E-06 34.4 2.9 26 111-137 10-35 (67)
163 2ef8_A C.ECOT38IS, putative tr 92.0 0.14 4.6E-06 35.0 3.6 33 105-137 12-45 (84)
164 3nrv_A Putative transcriptiona 92.0 0.64 2.2E-05 34.9 7.7 57 114-170 53-112 (148)
165 1sfx_A Conserved hypothetical 91.9 0.22 7.4E-06 35.3 4.7 44 103-146 20-65 (109)
166 1xmk_A Double-stranded RNA-spe 91.8 0.16 5.5E-06 35.9 3.8 44 103-146 11-57 (79)
167 3g3z_A NMB1585, transcriptiona 91.8 0.53 1.8E-05 35.3 7.0 57 113-169 43-102 (145)
168 3t76_A VANU, transcriptional r 91.7 0.11 3.7E-06 37.2 2.9 26 112-137 34-59 (88)
169 2fe3_A Peroxide operon regulat 91.7 0.39 1.3E-05 37.1 6.4 45 159-210 21-66 (145)
170 1v4r_A Transcriptional repress 91.7 0.022 7.6E-07 41.4 -0.9 46 103-148 19-68 (102)
171 2fu4_A Ferric uptake regulatio 91.6 0.32 1.1E-05 33.5 5.2 45 159-210 16-62 (83)
172 3r0a_A Putative transcriptiona 91.6 0.21 7.2E-06 37.5 4.5 42 105-146 28-73 (123)
173 2ek5_A Predicted transcription 91.5 0.13 4.5E-06 39.3 3.3 34 117-150 30-63 (129)
174 4g6q_A Putative uncharacterize 91.5 0.064 2.2E-06 43.4 1.6 47 99-145 19-67 (182)
175 3mky_B Protein SOPB; partition 91.5 0.24 8.1E-06 40.7 5.0 53 85-140 12-67 (189)
176 1j5y_A Transcriptional regulat 91.4 0.2 7E-06 40.3 4.5 42 103-144 21-65 (187)
177 2ewt_A BLDD, putative DNA-bind 91.4 0.23 8E-06 32.7 4.1 32 106-137 11-45 (71)
178 3bs3_A Putative DNA-binding pr 91.4 0.1 3.5E-06 34.9 2.3 25 113-137 21-45 (76)
179 1mkm_A ICLR transcriptional re 91.3 0.42 1.5E-05 40.0 6.6 70 101-173 6-78 (249)
180 2hzt_A Putative HTH-type trans 91.2 0.062 2.1E-06 39.4 1.1 44 103-146 14-59 (107)
181 2p5k_A Arginine repressor; DNA 91.2 0.24 8.4E-06 32.2 4.0 40 103-145 4-51 (64)
182 2qvo_A Uncharacterized protein 91.2 0.12 4.2E-06 36.8 2.7 53 116-169 31-84 (95)
183 2hoe_A N-acetylglucosamine kin 91.1 0.057 2E-06 48.2 1.1 40 106-145 23-63 (380)
184 2x48_A CAG38821; archeal virus 91.1 0.26 8.7E-06 31.3 4.0 44 153-209 9-54 (55)
185 2ovg_A Phage lambda CRO; trans 91.0 0.11 3.8E-06 35.3 2.2 27 111-138 10-36 (66)
186 1z7u_A Hypothetical protein EF 91.0 0.14 4.8E-06 37.7 3.0 43 104-146 23-67 (112)
187 2o03_A Probable zinc uptake re 91.0 0.16 5.6E-06 38.6 3.4 43 103-145 11-61 (131)
188 3s8q_A R-M controller protein; 91.0 0.2 6.8E-06 34.2 3.6 32 106-137 14-46 (82)
189 3oio_A Transcriptional regulat 91.0 0.3 1E-05 35.7 4.8 90 106-216 10-104 (113)
190 1lmb_3 Protein (lambda repress 90.9 0.2 6.8E-06 34.9 3.6 52 113-180 28-79 (92)
191 3eyy_A Putative iron uptake re 90.9 0.54 1.8E-05 36.4 6.4 45 159-210 18-62 (145)
192 1qbj_A Protein (double-strande 90.9 0.16 5.5E-06 35.9 3.0 42 158-210 7-51 (81)
193 3eus_A DNA-binding protein; st 90.8 0.21 7.2E-06 34.8 3.6 33 105-137 16-49 (86)
194 2fe3_A Peroxide operon regulat 90.8 0.27 9.3E-06 38.0 4.6 44 103-146 22-73 (145)
195 1mzb_A Ferric uptake regulatio 90.8 0.43 1.5E-05 36.4 5.7 45 159-210 17-63 (136)
196 2gqq_A Leucine-responsive regu 90.8 0.14 4.7E-06 40.3 2.9 43 103-145 13-57 (163)
197 2o03_A Probable zinc uptake re 90.7 0.23 7.9E-06 37.7 4.0 43 162-210 12-55 (131)
198 3szt_A QCSR, quorum-sensing co 90.7 0.25 8.5E-06 41.2 4.6 43 97-140 173-215 (237)
199 2ict_A Antitoxin HIGA; helix-t 90.7 0.36 1.2E-05 33.9 4.8 25 113-137 19-43 (94)
200 1qgp_A Protein (double strande 90.7 0.14 4.7E-06 35.8 2.4 42 158-210 11-55 (77)
201 1mzb_A Ferric uptake regulatio 90.7 0.27 9.4E-06 37.5 4.4 44 103-146 18-70 (136)
202 3o9x_A Uncharacterized HTH-typ 90.6 0.22 7.6E-06 37.5 3.8 25 113-137 82-106 (133)
203 3op9_A PLI0006 protein; struct 90.6 0.16 5.3E-06 37.2 2.8 34 104-137 10-44 (114)
204 2xig_A Ferric uptake regulatio 90.5 0.45 1.5E-05 37.1 5.6 43 162-210 28-71 (150)
205 1z6r_A MLC protein; transcript 90.3 0.23 7.9E-06 44.5 4.2 43 103-145 16-60 (406)
206 2qww_A Transcriptional regulat 90.1 0.74 2.5E-05 34.7 6.5 65 106-170 44-115 (154)
207 2ppx_A AGR_C_3184P, uncharacte 90.0 0.18 6.2E-06 36.1 2.7 25 113-137 41-65 (99)
208 2vxz_A Pyrsv_GP04; viral prote 89.9 0.58 2E-05 37.1 5.7 95 103-209 11-106 (165)
209 3qao_A LMO0526 protein, MERR-l 89.9 0.58 2E-05 39.7 6.3 69 115-187 3-72 (249)
210 2p4w_A Transcriptional regulat 89.9 0.095 3.3E-06 43.3 1.3 44 102-145 14-58 (202)
211 2rdp_A Putative transcriptiona 89.8 0.85 2.9E-05 34.2 6.6 56 114-169 55-113 (150)
212 2pg4_A Uncharacterized protein 89.8 0.29 9.9E-06 34.7 3.7 55 115-169 30-86 (95)
213 3tgn_A ADC operon repressor AD 89.6 0.5 1.7E-05 35.3 5.1 69 100-169 36-108 (146)
214 2fq4_A Transcriptional regulat 89.6 0.31 1.1E-05 38.0 4.0 41 97-137 6-54 (192)
215 4ghj_A Probable transcriptiona 89.6 0.29 9.9E-06 35.9 3.6 34 103-136 36-70 (101)
216 3sxy_A Transcriptional regulat 89.6 0.5 1.7E-05 38.6 5.4 47 116-162 36-82 (218)
217 3ech_A MEXR, multidrug resista 89.4 0.91 3.1E-05 33.9 6.5 57 114-170 50-109 (142)
218 1tbx_A ORF F-93, hypothetical 89.4 0.19 6.4E-06 35.8 2.4 57 114-170 21-81 (99)
219 3qp6_A CVIR transcriptional re 89.4 0.36 1.2E-05 41.1 4.6 42 99-141 197-238 (265)
220 1qpz_A PURA, protein (purine n 89.2 0.41 1.4E-05 41.1 4.9 40 117-172 2-41 (340)
221 2zhg_A Redox-sensitive transcr 89.2 0.44 1.5E-05 37.5 4.6 66 114-186 10-78 (154)
222 1jgs_A Multiple antibiotic res 89.1 0.99 3.4E-05 33.3 6.4 57 114-170 47-106 (138)
223 1z05_A Transcriptional regulat 89.1 0.12 3.9E-06 47.0 1.3 43 104-146 40-84 (429)
224 4ets_A Ferric uptake regulatio 89.1 0.55 1.9E-05 37.1 5.2 46 159-210 32-79 (162)
225 3jw4_A Transcriptional regulat 89.1 1.5 5.2E-05 32.8 7.6 56 114-169 56-114 (148)
226 1jhf_A LEXA repressor; LEXA SO 89.0 0.46 1.6E-05 38.3 4.8 40 106-145 13-56 (202)
227 3vib_A MTRR; helix-turn-helix 88.8 0.36 1.2E-05 38.1 3.9 39 98-136 5-51 (210)
228 2frh_A SARA, staphylococcal ac 88.8 0.79 2.7E-05 34.1 5.7 57 114-170 52-111 (127)
229 1fx7_A Iron-dependent represso 88.6 4.2 0.00014 33.4 10.5 63 104-169 10-75 (230)
230 3rkx_A Biotin-[acetyl-COA-carb 88.5 0.32 1.1E-05 42.9 3.7 43 103-145 3-49 (323)
231 2xig_A Ferric uptake regulatio 88.5 0.46 1.6E-05 37.0 4.3 43 103-145 27-77 (150)
232 2hsg_A Glucose-resistance amyl 88.5 0.42 1.4E-05 40.8 4.4 41 116-172 3-43 (332)
233 3kp7_A Transcriptional regulat 88.5 1.2 4.3E-05 33.5 6.7 57 112-168 48-109 (151)
234 3c7j_A Transcriptional regulat 88.4 0.21 7.1E-06 41.8 2.4 50 103-152 34-86 (237)
235 2w57_A Ferric uptake regulatio 88.4 0.5 1.7E-05 36.8 4.5 45 159-210 16-62 (150)
236 3ivp_A Putative transposon-rel 88.4 0.64 2.2E-05 34.5 4.9 36 102-137 11-47 (126)
237 2jvl_A TRMBF1; coactivator, he 88.3 0.48 1.7E-05 34.5 4.1 40 98-137 29-71 (107)
238 3kjx_A Transcriptional regulat 88.3 0.46 1.6E-05 40.8 4.6 41 116-172 11-51 (344)
239 2f2e_A PA1607; transcription f 88.3 0.48 1.6E-05 36.6 4.3 43 104-146 25-68 (146)
240 1b0n_A Protein (SINR protein); 88.2 0.3 1E-05 35.1 2.9 25 113-137 12-36 (111)
241 3k0l_A Repressor protein; heli 88.2 1.2 3.9E-05 34.2 6.4 57 114-170 59-118 (162)
242 3ihu_A Transcriptional regulat 88.2 0.61 2.1E-05 38.1 5.0 47 116-162 40-86 (222)
243 3bja_A Transcriptional regulat 88.2 1 3.4E-05 33.1 5.9 64 106-169 36-104 (139)
244 3oou_A LIN2118 protein; protei 88.1 1.5 5.3E-05 31.4 6.7 81 113-214 19-100 (108)
245 2eth_A Transcriptional regulat 88.1 1.3 4.3E-05 33.6 6.5 56 114-169 57-115 (154)
246 2qlz_A Transcription factor PF 88.1 0.12 4.1E-06 43.7 0.6 47 101-147 10-57 (232)
247 2fa5_A Transcriptional regulat 87.9 1.7 5.7E-05 33.0 7.2 63 107-169 53-120 (162)
248 3edp_A LIN2111 protein; APC883 87.8 0.37 1.3E-05 40.3 3.5 54 97-150 7-68 (236)
249 3g5g_A Regulatory protein; tra 87.8 0.45 1.5E-05 34.3 3.6 34 104-137 29-63 (99)
250 2l1p_A DNA-binding protein SAT 87.8 0.39 1.3E-05 34.2 3.1 31 106-137 24-54 (83)
251 3df8_A Possible HXLR family tr 87.8 0.45 1.5E-05 35.0 3.6 60 103-163 27-90 (111)
252 3bj6_A Transcriptional regulat 87.8 1.4 4.6E-05 33.1 6.5 63 106-168 43-110 (152)
253 2hs5_A Putative transcriptiona 87.8 0.32 1.1E-05 40.6 3.1 46 116-161 52-97 (239)
254 2l49_A C protein; P2 bacteriop 87.7 0.38 1.3E-05 33.9 3.1 25 113-137 15-39 (99)
255 3trb_A Virulence-associated pr 87.6 0.47 1.6E-05 34.7 3.6 27 111-137 23-49 (104)
256 3mwm_A ZUR, putative metal upt 87.6 0.34 1.2E-05 37.3 2.9 43 162-210 15-58 (139)
257 3bhq_A Transcriptional regulat 87.4 0.34 1.2E-05 38.3 2.9 41 96-136 5-53 (211)
258 2o38_A Hypothetical protein; a 87.4 0.47 1.6E-05 35.6 3.6 25 113-137 51-75 (120)
259 3f52_A CLP gene regulator (CLG 87.3 0.5 1.7E-05 34.5 3.6 34 104-137 29-63 (117)
260 2h09_A Transcriptional regulat 87.3 0.84 2.9E-05 34.9 5.1 51 114-167 53-103 (155)
261 3bpv_A Transcriptional regulat 87.2 0.8 2.7E-05 33.7 4.8 41 106-146 32-74 (138)
262 2nnn_A Probable transcriptiona 87.1 0.75 2.6E-05 33.9 4.6 64 106-169 41-109 (140)
263 3lsg_A Two-component response 87.1 2 6.9E-05 30.5 6.8 83 111-214 14-98 (103)
264 1bia_A BIRA bifunctional prote 87.0 0.48 1.6E-05 41.5 3.9 43 103-145 5-49 (321)
265 3eco_A MEPR; mutlidrug efflux 87.0 1.3 4.4E-05 32.7 5.8 56 115-170 47-105 (139)
266 3cec_A Putative antidote prote 86.9 0.3 1E-05 35.0 2.2 25 113-137 29-53 (104)
267 3oop_A LIN2960 protein; protei 86.9 1.2 4E-05 33.2 5.6 56 114-169 50-108 (143)
268 1zs4_A Regulatory protein CII; 86.8 0.26 8.7E-06 35.2 1.6 34 105-139 15-48 (83)
269 3cjn_A Transcriptional regulat 86.8 1.2 4.1E-05 33.9 5.7 63 106-168 55-122 (162)
270 3vk0_A NHTF, transcriptional r 86.7 0.59 2E-05 34.2 3.7 34 103-136 21-55 (114)
271 2fsw_A PG_0823 protein; alpha- 86.7 0.28 9.5E-06 35.7 1.9 43 104-146 26-70 (107)
272 3h5t_A Transcriptional regulat 86.7 0.45 1.5E-05 41.3 3.5 41 116-172 10-50 (366)
273 1yyv_A Putative transcriptiona 86.7 0.65 2.2E-05 35.3 4.0 63 103-165 35-102 (131)
274 3mwm_A ZUR, putative metal upt 86.6 0.51 1.8E-05 36.2 3.4 44 103-146 14-65 (139)
275 2hr3_A Probable transcriptiona 86.5 1.3 4.3E-05 33.0 5.6 57 114-170 49-108 (147)
276 1xwr_A Regulatory protein CII; 86.4 0.36 1.2E-05 35.4 2.3 26 114-139 22-47 (97)
277 2w57_A Ferric uptake regulatio 86.4 0.45 1.5E-05 37.1 3.1 43 103-145 17-68 (150)
278 1on2_A Transcriptional regulat 86.3 0.68 2.3E-05 34.9 4.0 34 114-147 21-54 (142)
279 1ku9_A Hypothetical protein MJ 86.3 0.47 1.6E-05 35.3 3.1 33 114-146 40-72 (152)
280 3cwr_A Transcriptional regulat 86.3 0.69 2.3E-05 35.7 4.1 40 97-136 9-58 (208)
281 2bnm_A Epoxidase; oxidoreducta 86.3 0.34 1.2E-05 38.7 2.4 35 103-137 10-45 (198)
282 2dk5_A DNA-directed RNA polyme 86.2 0.51 1.7E-05 34.0 3.1 32 115-146 36-67 (91)
283 1ic8_A Hepatocyte nuclear fact 86.2 2.2 7.5E-05 35.0 7.3 26 112-137 40-65 (194)
284 2bv6_A MGRA, HTH-type transcri 86.1 0.91 3.1E-05 33.7 4.6 62 106-167 40-106 (142)
285 3bdd_A Regulatory protein MARR 86.1 0.88 3E-05 33.6 4.5 41 106-146 34-76 (142)
286 2gxg_A 146AA long hypothetical 86.1 1.2 4.2E-05 33.0 5.3 56 113-168 48-106 (146)
287 3geu_A Intercellular adhesion 86.0 0.4 1.4E-05 36.9 2.6 35 102-136 2-44 (189)
288 3mlf_A Transcriptional regulat 86.0 0.47 1.6E-05 34.9 2.8 25 113-137 34-58 (111)
289 2wte_A CSA3; antiviral protein 86.0 0.74 2.5E-05 39.0 4.4 59 104-164 153-213 (244)
290 1lj9_A Transcriptional regulat 86.0 0.91 3.1E-05 33.7 4.5 54 114-167 42-98 (144)
291 3e6m_A MARR family transcripti 86.0 1.4 4.7E-05 33.7 5.7 58 113-170 65-125 (161)
292 2a61_A Transcriptional regulat 85.9 0.93 3.2E-05 33.7 4.6 56 114-169 46-104 (145)
293 3n0r_A Response regulator; sig 85.9 0.47 1.6E-05 40.6 3.2 42 100-141 112-153 (286)
294 2fbk_A Transcriptional regulat 85.7 2.5 8.6E-05 33.0 7.3 54 116-169 87-143 (181)
295 2fbh_A Transcriptional regulat 85.7 0.99 3.4E-05 33.5 4.6 33 114-146 51-83 (146)
296 3bro_A Transcriptional regulat 85.6 1.1 3.8E-05 33.1 4.8 32 115-146 50-81 (141)
297 3u5c_N S27A, YS15, 40S ribosom 85.4 2.1 7.3E-05 33.7 6.4 90 57-146 30-136 (151)
298 2zb9_A Putative transcriptiona 85.4 0.54 1.8E-05 37.0 3.1 40 97-136 17-64 (214)
299 2nyx_A Probable transcriptiona 85.3 1.4 4.9E-05 34.0 5.5 55 114-168 58-115 (168)
300 1z91_A Organic hydroperoxide r 85.3 0.94 3.2E-05 33.8 4.3 33 114-146 53-85 (147)
301 4hbl_A Transcriptional regulat 85.1 0.96 3.3E-05 34.1 4.4 56 114-169 54-112 (149)
302 1y9q_A Transcriptional regulat 85.1 0.67 2.3E-05 36.8 3.6 33 105-137 13-46 (192)
303 2fbi_A Probable transcriptiona 85.1 0.79 2.7E-05 33.9 3.8 56 114-169 49-107 (142)
304 3k2z_A LEXA repressor; winged 84.9 0.99 3.4E-05 36.4 4.6 31 116-146 25-55 (196)
305 2elh_A CG11849-PA, LD40883P; s 84.9 2.4 8.3E-05 29.5 6.1 44 154-210 19-62 (87)
306 3vp5_A Transcriptional regulat 84.9 0.9 3.1E-05 35.4 4.2 37 99-135 8-52 (189)
307 3s2w_A Transcriptional regulat 84.9 0.78 2.7E-05 35.0 3.8 56 114-169 63-121 (159)
308 1hlv_A CENP-B, major centromer 84.8 2.5 8.6E-05 31.2 6.5 45 155-210 5-49 (131)
309 1l9z_H Sigma factor SIGA; heli 84.7 0.92 3.2E-05 41.8 4.7 41 100-140 376-420 (438)
310 2fjr_A Repressor protein CI; g 84.6 0.7 2.4E-05 36.6 3.5 33 104-137 10-42 (189)
311 3mq0_A Transcriptional repress 84.6 0.58 2E-05 40.0 3.1 45 103-147 30-77 (275)
312 4a0z_A Transcription factor FA 84.5 1.4 4.8E-05 35.8 5.3 44 160-214 11-54 (190)
313 3fm5_A Transcriptional regulat 84.5 0.99 3.4E-05 34.0 4.2 56 115-170 54-112 (150)
314 2xrn_A HTH-type transcriptiona 84.5 0.59 2E-05 39.0 3.1 41 106-146 9-52 (241)
315 2di3_A Bacterial regulatory pr 84.5 1.5 5.2E-05 36.1 5.6 34 117-150 30-65 (239)
316 2o0y_A Transcriptional regulat 84.4 0.96 3.3E-05 38.1 4.4 83 106-191 26-112 (260)
317 3kz9_A SMCR; transcriptional r 84.4 0.9 3.1E-05 35.0 4.0 38 99-136 13-58 (206)
318 3mkl_A HTH-type transcriptiona 84.4 3 0.0001 30.5 6.8 90 104-215 8-102 (120)
319 3iyd_F RNA polymerase sigma fa 84.3 0.78 2.7E-05 43.8 4.2 43 99-141 550-596 (613)
320 2dg7_A Putative transcriptiona 84.3 0.76 2.6E-05 35.5 3.5 36 102-137 6-49 (195)
321 2eby_A Putative HTH-type trans 84.3 0.38 1.3E-05 35.0 1.6 25 113-137 22-46 (113)
322 1p6r_A Penicillinase repressor 84.2 1 3.5E-05 30.8 3.8 43 104-146 10-58 (82)
323 3nrg_A TETR family transcripti 84.1 1.2 4.1E-05 34.7 4.6 36 101-136 11-54 (217)
324 3b81_A Transcriptional regulat 84.1 0.67 2.3E-05 35.8 3.1 35 101-135 9-51 (203)
325 3kxa_A NGO0477 protein, putati 84.0 0.63 2.2E-05 35.8 2.9 26 112-137 78-103 (141)
326 3lfp_A CSP231I C protein; tran 83.9 0.88 3E-05 32.2 3.4 25 113-137 12-40 (98)
327 2pex_A Transcriptional regulat 83.9 1 3.6E-05 33.9 4.1 41 106-146 50-92 (153)
328 3mn2_A Probable ARAC family tr 83.8 4.2 0.00014 29.0 7.2 83 113-215 16-100 (108)
329 1s3j_A YUSO protein; structura 83.8 1.4 4.7E-05 33.2 4.7 54 114-167 50-106 (155)
330 2g7u_A Transcriptional regulat 83.5 0.44 1.5E-05 40.2 1.9 44 103-146 14-60 (257)
331 2p8t_A Hypothetical protein PH 83.5 1.6 5.4E-05 36.1 5.2 69 100-172 15-83 (200)
332 3nqo_A MARR-family transcripti 83.5 2.4 8.3E-05 33.5 6.3 56 114-169 56-114 (189)
333 3hta_A EBRA repressor; TETR fa 83.4 1.1 3.6E-05 35.8 4.1 40 97-136 22-69 (217)
334 2wv0_A YVOA, HTH-type transcri 83.3 1.1 3.9E-05 37.4 4.4 33 117-149 36-68 (243)
335 3eet_A Putative GNTR-family tr 83.2 0.99 3.4E-05 38.5 4.0 50 99-148 29-86 (272)
336 3bwg_A Uncharacterized HTH-typ 83.1 0.85 2.9E-05 38.1 3.5 31 117-147 31-61 (239)
337 3bdn_A Lambda repressor; repre 83.1 0.45 1.5E-05 39.0 1.7 24 114-137 29-52 (236)
338 3eyy_A Putative iron uptake re 83.0 0.98 3.3E-05 34.9 3.6 43 103-145 19-68 (145)
339 2ofy_A Putative XRE-family tra 82.9 0.87 3E-05 31.1 3.0 22 116-137 28-49 (86)
340 1a04_A Nitrate/nitrite respons 82.9 1.1 3.8E-05 35.4 4.0 41 99-140 154-194 (215)
341 4fx0_A Probable transcriptiona 82.9 2.8 9.7E-05 31.9 6.2 54 116-169 53-108 (148)
342 3q0w_A HTH-type transcriptiona 82.9 1.1 3.7E-05 36.1 4.0 40 97-136 38-85 (236)
343 2iu5_A DHAS, YCEG, HTH-type dh 82.9 1 3.6E-05 34.9 3.8 36 101-136 11-54 (195)
344 3f8m_A GNTR-family protein tra 82.8 0.61 2.1E-05 39.3 2.5 44 103-147 22-68 (248)
345 2ahq_A Sigma-54, RNA polymeras 82.7 2.5 8.5E-05 29.5 5.2 52 159-216 18-72 (76)
346 1yg2_A Gene activator APHA; vi 82.7 4.8 0.00016 31.8 7.7 69 104-172 3-85 (179)
347 3c3w_A Two component transcrip 82.7 1.1 3.9E-05 36.0 4.0 41 99-140 149-189 (225)
348 2a6h_F RNA polymerase sigma fa 82.6 0.96 3.3E-05 41.3 3.9 41 100-140 361-405 (423)
349 3lhq_A Acrab operon repressor 82.6 1.1 3.8E-05 34.7 3.9 36 101-136 12-55 (220)
350 2xzm_O RPS13E; ribosome, trans 82.5 3.6 0.00012 32.4 6.6 90 57-146 32-138 (153)
351 3qkx_A Uncharacterized HTH-typ 82.5 1 3.6E-05 34.1 3.6 35 102-136 7-49 (188)
352 2oz6_A Virulence factor regula 82.3 0.71 2.4E-05 36.3 2.6 31 116-146 165-195 (207)
353 3cdh_A Transcriptional regulat 82.3 1.6 5.5E-05 32.9 4.6 65 106-170 46-115 (155)
354 2dg8_A Putative TETR-family tr 82.2 0.89 3E-05 35.2 3.1 34 103-136 9-50 (193)
355 3iwf_A Transcription regulator 82.2 1.6 5.6E-05 32.1 4.4 40 163-213 19-62 (107)
356 2heo_A Z-DNA binding protein 1 82.2 1.9 6.4E-05 28.8 4.3 38 162-210 11-49 (67)
357 2wus_R RODZ, putative uncharac 82.2 1.5 5.1E-05 32.5 4.2 30 108-137 12-42 (112)
358 3f3x_A Transcriptional regulat 82.1 1.4 4.7E-05 32.9 4.1 65 106-170 40-108 (144)
359 2g7s_A Transcriptional regulat 81.9 1.2 4.1E-05 33.8 3.8 35 102-136 7-49 (194)
360 3cdl_A Transcriptional regulat 81.9 1.2 4E-05 34.9 3.7 36 100-135 6-49 (203)
361 1r7j_A Conserved hypothetical 81.9 1.4 4.9E-05 31.6 3.9 86 102-191 7-93 (95)
362 3bqz_B HTH-type transcriptiona 81.7 0.75 2.6E-05 35.2 2.5 21 116-136 23-43 (194)
363 3ryp_A Catabolite gene activat 81.7 0.76 2.6E-05 36.2 2.6 31 116-146 168-198 (210)
364 2wui_A MEXZ, transcriptional r 81.6 1.1 3.7E-05 35.3 3.5 37 101-137 9-53 (210)
365 2k9s_A Arabinose operon regula 81.6 3.3 0.00011 29.6 5.8 81 114-215 19-100 (107)
366 2auw_A Hypothetical protein NE 81.6 0.88 3E-05 36.7 2.9 25 113-137 101-125 (170)
367 2xdn_A HTH-type transcriptiona 81.6 1.4 4.8E-05 34.5 4.1 36 102-137 10-53 (210)
368 3boq_A Transcriptional regulat 81.6 1.3 4.3E-05 33.6 3.7 63 106-168 50-118 (160)
369 3b02_A Transcriptional regulat 81.4 0.81 2.8E-05 35.9 2.6 32 116-147 140-171 (195)
370 2eh3_A Transcriptional regulat 81.4 0.9 3.1E-05 34.7 2.8 33 104-136 3-43 (179)
371 1okr_A MECI, methicillin resis 81.1 1.3 4.5E-05 32.2 3.6 35 113-147 22-60 (123)
372 1hw1_A FADR, fatty acid metabo 81.1 1 3.4E-05 37.0 3.2 33 117-149 33-65 (239)
373 2p5t_A Putative transcriptiona 81.1 0.31 1.1E-05 38.0 0.0 25 113-137 12-36 (158)
374 3lwj_A Putative TETR-family tr 81.0 1.3 4.6E-05 34.0 3.8 36 101-136 10-53 (202)
375 4a5n_A Uncharacterized HTH-typ 81.0 0.89 3E-05 34.9 2.6 43 104-146 27-71 (131)
376 2zcw_A TTHA1359, transcription 81.0 0.84 2.9E-05 36.0 2.6 32 116-147 147-178 (202)
377 2o7t_A Transcriptional regulat 81.0 1.4 4.7E-05 34.2 3.8 35 102-136 7-49 (199)
378 3knw_A Putative transcriptiona 80.9 1.4 4.9E-05 34.1 3.9 37 100-136 11-55 (212)
379 3dkw_A DNR protein; CRP-FNR, H 80.9 0.78 2.7E-05 36.6 2.4 31 116-146 179-209 (227)
380 3k69_A Putative transcription 80.8 1 3.6E-05 35.5 3.0 32 116-147 29-60 (162)
381 4ev0_A Transcription regulator 80.7 0.86 2.9E-05 36.0 2.6 31 116-146 164-194 (216)
382 3dv8_A Transcriptional regulat 80.7 1 3.5E-05 35.7 3.0 32 115-146 169-200 (220)
383 1pb6_A Hypothetical transcript 80.6 1.4 4.9E-05 34.1 3.8 35 102-136 17-59 (212)
384 3egq_A TETR family transcripti 80.6 0.93 3.2E-05 34.2 2.6 34 103-136 4-45 (170)
385 2np5_A Transcriptional regulat 80.6 0.97 3.3E-05 35.5 2.8 36 101-136 7-50 (203)
386 3iwz_A CAP-like, catabolite ac 80.6 0.87 3E-05 36.3 2.6 31 116-146 188-218 (230)
387 2htj_A P fimbrial regulatory p 80.5 2.9 9.9E-05 28.5 5.0 36 164-210 3-38 (81)
388 3u2r_A Regulatory protein MARR 80.5 1.1 3.7E-05 34.6 3.1 56 115-170 62-120 (168)
389 3anp_C Transcriptional repress 80.5 1.4 4.8E-05 34.3 3.8 34 103-136 9-50 (204)
390 3bjb_A Probable transcriptiona 80.5 1 3.6E-05 35.5 3.0 37 101-137 20-64 (207)
391 3pas_A TETR family transcripti 80.4 1.1 3.8E-05 34.1 3.0 35 102-136 7-49 (195)
392 3dpj_A Transcription regulator 80.4 1.5 5.1E-05 33.6 3.8 36 101-136 6-49 (194)
393 2o3f_A Putative HTH-type trans 80.4 0.73 2.5E-05 34.2 1.9 40 163-213 23-66 (111)
394 3hsr_A HTH-type transcriptiona 80.4 0.65 2.2E-05 34.7 1.6 55 114-168 49-106 (140)
395 2o20_A Catabolite control prot 80.3 0.34 1.2E-05 41.5 0.0 23 116-138 6-28 (332)
396 3dew_A Transcriptional regulat 80.2 1 3.5E-05 34.5 2.8 35 103-137 8-50 (206)
397 2h8r_A Hepatocyte nuclear fact 80.1 12 0.00041 31.2 9.5 27 111-137 40-66 (221)
398 2fmy_A COOA, carbon monoxide o 80.1 0.91 3.1E-05 36.2 2.5 32 116-147 168-199 (220)
399 3f1b_A TETR-like transcription 80.0 1.5 5.3E-05 33.6 3.8 34 102-135 13-54 (203)
400 1ft9_A Carbon monoxide oxidati 80.0 1.1 3.6E-05 35.9 2.9 32 116-147 164-195 (222)
401 1zyb_A Transcription regulator 80.0 1 3.5E-05 36.4 2.9 31 116-146 187-217 (232)
402 3dcf_A Transcriptional regulat 79.9 1.5 5.1E-05 34.1 3.7 34 103-136 31-72 (218)
403 1xn7_A Hypothetical protein YH 79.9 1.7 5.8E-05 30.3 3.6 37 163-210 4-40 (78)
404 3d0s_A Transcriptional regulat 79.9 0.95 3.2E-05 36.2 2.6 32 116-147 178-209 (227)
405 4hku_A LMO2814 protein, TETR t 79.9 1.6 5.3E-05 33.6 3.8 32 104-135 8-47 (178)
406 2jn6_A Protein CGL2762, transp 79.9 1.2 4.1E-05 31.5 2.9 37 52-88 2-40 (97)
407 2qko_A Possible transcriptiona 79.8 1.3 4.4E-05 34.9 3.3 36 101-136 26-69 (215)
408 3loc_A HTH-type transcriptiona 79.7 1.2 4E-05 34.5 3.0 34 103-136 18-59 (212)
409 3cjd_A Transcriptional regulat 79.7 1.5 5.3E-05 34.2 3.7 36 101-136 10-53 (198)
410 4aci_A HTH-type transcriptiona 79.6 0.83 2.8E-05 35.0 2.1 36 102-137 13-56 (191)
411 3him_A Probable transcriptiona 79.6 1.2 4E-05 34.4 3.0 36 100-135 13-56 (211)
412 3e97_A Transcriptional regulat 79.6 0.98 3.4E-05 36.2 2.6 32 116-147 176-207 (231)
413 2fxa_A Protease production reg 79.5 2.8 9.5E-05 34.0 5.3 60 113-172 60-122 (207)
414 2lnb_A Z-DNA-binding protein 1 79.5 2 6.7E-05 30.3 3.7 44 103-146 19-65 (80)
415 1vz0_A PARB, chromosome partit 79.5 2.1 7.1E-05 35.8 4.6 41 98-138 116-157 (230)
416 2fd5_A Transcriptional regulat 79.4 2 6.9E-05 32.6 4.3 35 102-136 6-48 (180)
417 3ljl_A Transcriptional regulat 79.3 1.3 4.5E-05 33.4 3.1 37 101-137 12-56 (156)
418 3col_A Putative transcription 79.3 1 3.5E-05 34.4 2.5 34 102-135 9-50 (196)
419 3ccy_A Putative TETR-family tr 79.3 1.3 4.6E-05 34.4 3.3 35 102-136 13-55 (203)
420 3qbm_A TETR transcriptional re 79.3 0.81 2.8E-05 35.1 1.9 34 102-135 6-47 (199)
421 2ia2_A Putative transcriptiona 79.3 0.58 2E-05 39.7 1.1 44 103-146 21-67 (265)
422 1bl0_A Protein (multiple antib 79.2 3.3 0.00011 30.7 5.3 92 103-215 11-107 (129)
423 2ijl_A AGR_C_4647P, molybdenum 79.2 3.1 0.00011 32.0 5.2 63 106-168 29-95 (135)
424 2glo_A Brinker CG9653-PA; prot 79.2 1.4 4.7E-05 28.5 2.7 33 56-88 6-42 (59)
425 3eup_A Transcriptional regulat 79.2 1.2 4E-05 34.3 2.8 35 101-135 9-51 (204)
426 1sfu_A 34L protein; protein/Z- 79.0 1.1 3.8E-05 31.3 2.4 31 116-146 30-60 (75)
427 1vi0_A Transcriptional regulat 79.0 1.2 4E-05 35.1 2.8 34 103-136 8-49 (206)
428 2hyt_A TETR-family transcripti 78.9 2 6.7E-05 33.4 4.1 35 102-136 11-53 (197)
429 2gen_A Probable transcriptiona 78.9 1.1 3.8E-05 34.9 2.7 34 103-136 7-48 (197)
430 1r71_A Transcriptional repress 78.9 2 7E-05 34.6 4.2 40 99-138 35-75 (178)
431 1oyi_A Double-stranded RNA-bin 78.8 0.98 3.3E-05 32.1 2.0 40 159-210 15-54 (82)
432 3vpr_A Transcriptional regulat 78.7 1.5 5.3E-05 33.6 3.4 34 104-137 4-45 (190)
433 2jj7_A Hemolysin II regulatory 78.7 1.3 4.6E-05 33.7 3.0 36 102-137 6-49 (186)
434 3gzi_A Transcriptional regulat 78.6 1.6 5.5E-05 34.0 3.6 36 102-137 16-59 (218)
435 3mnl_A KSTR, transcriptional r 78.6 1.3 4.6E-05 34.0 3.0 35 102-136 19-61 (203)
436 1nr3_A MTH0916, DNA-binding pr 78.6 0.34 1.2E-05 36.3 -0.5 25 114-138 4-28 (122)
437 2ras_A Transcriptional regulat 78.6 0.98 3.4E-05 35.3 2.2 35 102-136 10-52 (212)
438 3e7q_A Transcriptional regulat 78.5 1.2 4.2E-05 34.4 2.8 37 100-136 11-55 (215)
439 2qwt_A Transcriptional regulat 78.4 1.9 6.4E-05 33.5 3.9 34 103-136 13-53 (196)
440 3crj_A Transcription regulator 78.2 1.4 4.8E-05 34.5 3.1 37 100-136 11-55 (199)
441 3aqt_A Bacterial regulatory pr 78.2 1.9 6.4E-05 35.0 4.0 35 102-136 45-87 (245)
442 2ibd_A Possible transcriptiona 78.2 1.9 6.4E-05 33.6 3.8 34 103-136 14-55 (204)
443 2gau_A Transcriptional regulat 78.2 1.2 4E-05 35.8 2.6 32 116-147 181-212 (232)
444 2y75_A HTH-type transcriptiona 78.1 2 6.8E-05 32.0 3.8 32 116-147 27-58 (129)
445 3cta_A Riboflavin kinase; stru 78.1 0.88 3E-05 37.5 1.9 53 116-168 28-80 (230)
446 1r8e_A Multidrug-efflux transp 78.1 0.91 3.1E-05 38.2 2.0 65 116-186 6-74 (278)
447 3c2b_A Transcriptional regulat 78.1 1.7 5.9E-05 34.0 3.6 35 103-137 15-57 (221)
448 3deu_A Transcriptional regulat 78.1 2.1 7.1E-05 33.1 4.0 32 115-146 68-99 (166)
449 3bni_A Putative TETR-family tr 77.9 1.8 6.3E-05 34.6 3.8 35 102-136 42-84 (229)
450 3on4_A Transcriptional regulat 77.9 1.4 4.6E-05 33.5 2.8 34 103-136 10-51 (191)
451 2o3f_A Putative HTH-type trans 77.9 3.1 0.00011 30.6 4.7 25 115-139 39-63 (111)
452 3dbi_A Sugar-binding transcrip 77.8 0.45 1.5E-05 40.7 0.0 23 116-138 4-26 (338)
453 3e6c_C CPRK, cyclic nucleotide 77.7 1.2 4.1E-05 36.4 2.6 53 116-174 178-230 (250)
454 3la7_A Global nitrogen regulat 77.7 1.2 4.1E-05 36.3 2.6 31 116-146 194-224 (243)
455 3qqa_A CMER; alpha-helical, he 77.6 1.7 5.9E-05 33.7 3.4 35 101-135 17-59 (216)
456 1yio_A Response regulatory pro 77.6 1.8 6.1E-05 34.0 3.5 40 100-140 143-182 (208)
457 2d1h_A ST1889, 109AA long hypo 77.5 3.4 0.00011 28.8 4.7 43 157-210 18-60 (109)
458 3nnr_A Transcriptional regulat 77.4 1.1 3.7E-05 35.6 2.2 35 102-136 4-46 (228)
459 2bgc_A PRFA; bacterial infecti 77.4 1.4 4.7E-05 35.8 2.9 33 115-147 169-202 (238)
460 3fx3_A Cyclic nucleotide-bindi 77.3 1.2 4.2E-05 35.8 2.5 29 116-144 179-207 (237)
461 1ojl_A Transcriptional regulat 77.3 0.95 3.2E-05 39.0 1.9 36 102-137 267-303 (304)
462 3ppb_A Putative TETR family tr 77.2 1.9 6.4E-05 32.8 3.5 34 103-136 9-50 (195)
463 1sgm_A Putative HTH-type trans 77.2 2 6.9E-05 32.5 3.7 35 103-137 6-48 (191)
464 3rd3_A Probable transcriptiona 77.2 1.3 4.4E-05 33.8 2.5 36 101-136 8-51 (197)
465 2yve_A Transcriptional regulat 77.1 1.9 6.5E-05 33.3 3.5 34 104-137 5-46 (185)
466 2zcm_A Biofilm operon icaabcd 77.1 1.4 4.7E-05 33.9 2.7 21 116-136 28-48 (192)
467 3fym_A Putative uncharacterize 77.1 1.5 5.3E-05 33.0 2.9 25 113-137 14-38 (130)
468 2g3b_A Putative TETR-family tr 77.1 1.6 5.6E-05 34.4 3.2 35 103-137 3-45 (208)
469 3h5o_A Transcriptional regulat 76.9 0.5 1.7E-05 40.5 0.0 23 116-138 5-27 (339)
470 3klo_A Transcriptional regulat 76.9 1.7 5.9E-05 34.8 3.3 40 100-140 160-199 (225)
471 2d6y_A Putative TETR family re 76.7 1.9 6.4E-05 33.8 3.4 35 103-137 8-50 (202)
472 3kcc_A Catabolite gene activat 76.6 1.3 4.5E-05 36.6 2.6 31 116-146 218-248 (260)
473 3rh2_A Hypothetical TETR-like 76.5 1.5 5.2E-05 34.3 2.8 34 103-136 3-44 (212)
474 3i4p_A Transcriptional regulat 76.5 2.7 9.4E-05 32.6 4.3 39 161-210 3-41 (162)
475 3bru_A Regulatory protein, TET 76.4 1.8 6.2E-05 33.8 3.3 35 102-136 29-71 (222)
476 2qtq_A Transcriptional regulat 76.3 1.8 6.2E-05 33.4 3.2 36 102-137 15-58 (213)
477 3fzv_A Probable transcriptiona 76.3 6.7 0.00023 32.1 6.9 57 107-165 10-68 (306)
478 3on2_A Probable transcriptiona 76.2 1.3 4.6E-05 33.7 2.4 34 102-135 11-52 (199)
479 2qib_A TETR-family transcripti 76.1 2.3 7.8E-05 34.0 3.9 36 101-136 11-54 (231)
480 1jye_A Lactose operon represso 76.0 0.54 1.8E-05 40.6 0.0 23 116-138 4-26 (349)
481 3e3m_A Transcriptional regulat 76.0 0.54 1.9E-05 40.6 0.0 23 116-138 13-35 (355)
482 2nx4_A Transcriptional regulat 76.0 2.3 8E-05 32.9 3.8 34 103-136 10-51 (194)
483 3r0a_A Putative transcriptiona 75.9 3.4 0.00012 30.7 4.5 40 159-210 25-66 (123)
484 3v6g_A Probable transcriptiona 75.9 1.6 5.5E-05 34.7 2.8 35 102-136 13-55 (208)
485 1rkt_A Protein YFIR; transcrip 75.9 2.1 7.1E-05 33.4 3.4 34 102-135 11-52 (205)
486 4ich_A Transcriptional regulat 75.8 0.55 1.9E-05 40.0 0.0 37 102-138 29-66 (311)
487 3mvp_A TETR/ACRR transcription 75.8 2.4 8.1E-05 32.8 3.8 36 101-136 24-67 (217)
488 3g1o_A Transcriptional regulat 75.7 1.3 4.3E-05 36.1 2.2 38 99-136 39-84 (255)
489 3bil_A Probable LACI-family tr 75.7 0.56 1.9E-05 40.6 0.0 23 116-138 9-31 (348)
490 4a0z_A Transcription factor FA 75.6 2.2 7.5E-05 34.6 3.6 38 103-140 12-51 (190)
491 2f07_A YVDT; helix-turn-helix, 75.6 1.7 5.7E-05 33.9 2.8 35 102-136 9-51 (197)
492 2oer_A Probable transcriptiona 75.5 1.4 4.9E-05 34.8 2.4 35 102-136 23-65 (214)
493 1p6r_A Penicillinase repressor 75.4 5.1 0.00018 27.1 5.0 46 157-210 6-51 (82)
494 2hyj_A Putative TETR-family tr 75.0 2.2 7.6E-05 33.3 3.4 35 101-135 10-52 (200)
495 2gfn_A HTH-type transcriptiona 74.9 2.4 8.2E-05 33.4 3.6 35 102-136 8-50 (209)
496 4aik_A Transcriptional regulat 74.9 1.7 5.7E-05 33.3 2.6 32 115-146 46-77 (151)
497 3kkc_A TETR family transcripti 74.9 1.3 4.6E-05 33.4 2.0 34 103-136 12-53 (177)
498 2rek_A Putative TETR-family tr 74.9 2.3 7.8E-05 32.8 3.4 34 103-136 16-56 (199)
499 3f0c_A TETR-molecule A, transc 74.8 1.8 6.1E-05 33.7 2.8 34 103-136 11-52 (216)
500 2id3_A Putative transcriptiona 74.8 2.5 8.6E-05 33.6 3.8 36 102-137 39-82 (225)
No 1
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=99.84 E-value=8.1e-21 Score=145.32 Aligned_cols=124 Identities=81% Similarity=1.401 Sum_probs=104.6
Q ss_pred ccccCCcccCCCcCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHH
Q psy1898 87 VNQLGGVFINGRPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRI 166 (230)
Q Consensus 87 ~~~l~~~~~~g~~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I 166 (230)
++.+|+.|.+++.|+.++|.+|+.++.+|.|..+||+.|+||++||++|+++|++.|...+.++++.+|++++++..+.|
T Consensus 5 ~~~~gg~~~m~~~~s~~~r~~i~~~~~~g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i 84 (128)
T 1pdn_C 5 VNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRI 84 (128)
T ss_dssp ECTTSCEEETTSCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHH
T ss_pred HhhhcccccCCCcCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHHH
Confidence 67889988889999999999999999999999999999999999999999999999987766654447788899889999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcCC
Q psy1898 167 EEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGGR 211 (230)
Q Consensus 167 ~~l~~~~P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~g 211 (230)
.+++.++|.++.++|+++|.+ .|+......+|.+||+|+|+++|
T Consensus 85 ~~~~~~~~~~s~~~i~~~l~~-~g~~~~~~~~s~~tv~r~l~~~~ 128 (128)
T 1pdn_C 85 EEYKRSSPGMFSWEIREKLIR-EGVCDRSTAPSVSAISRLVRGRD 128 (128)
T ss_dssp HHTTTTCTTCCHHHHHHHHHH-TSSSCSTTCCCHHHHHHHC----
T ss_pred HHHHHhCcchHHHHHHHHHHH-cCCccccCCcCHHHHHHHHHhcC
Confidence 999988999999999999986 47621112379999999999875
No 2
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=99.82 E-value=4.2e-19 Score=141.15 Aligned_cols=123 Identities=68% Similarity=1.166 Sum_probs=107.0
Q ss_pred cccccCCcccCCCcCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHH
Q psy1898 86 GVNQLGGVFINGRPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKR 165 (230)
Q Consensus 86 g~~~l~~~~~~g~~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~ 165 (230)
+.+.+++.|.+++.|+.++|.+|+.++.+|.|..+||+.||||++||++|+++|++.|.+.++++++.+|++++++..+.
T Consensus 19 ~~~~~gg~~~~~~~~s~e~r~~iv~~~~~G~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~ 98 (149)
T 1k78_A 19 GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEK 98 (149)
T ss_dssp CBCTTSCBCCTTSCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHH
T ss_pred CccCCCceecCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHH
Confidence 46788998888999999999999999999999999999999999999999999999998877666554478889999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHhh----CCCCCCCCCCHhHHHHHHHcCCCC
Q psy1898 166 IEEYKKTNPGIFSWEIRDRLVKQD----GICDKNSAPSVSSISRLLRGGRRD 213 (230)
Q Consensus 166 I~~l~~~~P~~t~~eI~~~L~~~~----Gi~~~~~~vS~sTV~R~Lr~~g~~ 213 (230)
|.+++.++|.++.++|+++|..+. |+ .+|.+||+|+|++..-.
T Consensus 99 I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~-----~~S~sTV~r~L~~~~~~ 145 (149)
T 1k78_A 99 IAEYKRQNPTMFAWEIRDRLLAERVCDNDT-----VPSVSSINRIIRTKVQQ 145 (149)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHTTSSCTTT-----SCCHHHHHHHHHCC---
T ss_pred HHHHHHhCcchhHHHHHHHHHHhcccccCC-----CcCHHHHHHHHHHHhcC
Confidence 999999999999999999997633 55 38999999999987543
No 3
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=99.77 E-value=3e-18 Score=137.90 Aligned_cols=126 Identities=66% Similarity=1.188 Sum_probs=106.5
Q ss_pred ccccCCcccCCCcCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHH
Q psy1898 87 VNQLGGVFINGRPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRI 166 (230)
Q Consensus 87 ~~~l~~~~~~g~~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I 166 (230)
.+.+|+.+.+++.|+.++|.+|+.++.+|.|.++||+.|+||++||++|+++|++.|.+.++++++.+|++++++..+.|
T Consensus 13 ~~~~g~~~~~~~~~s~e~r~~ii~l~~~G~s~~~IA~~lgis~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I 92 (159)
T 2k27_A 13 LNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKI 92 (159)
T ss_dssp CCCCCCTTSSSCSSCHHHHHHHHHHHHHTCCHHHHHHHHTCCSHHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHH
T ss_pred hhhcCCcCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHH
Confidence 45788888788899999999999999999999999999999999999999999999987776655544778899899999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcCCCC
Q psy1898 167 EEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGGRRD 213 (230)
Q Consensus 167 ~~l~~~~P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~g~~ 213 (230)
.+++.++|.++.++|+++|.+ .+++..+..+|.+||+|+|++..-.
T Consensus 93 ~~~~~~~~~~s~~~i~~~l~~-~~~~~~~~~~S~sTV~r~L~~~~~~ 138 (159)
T 2k27_A 93 GDYKRQNPTMFAWEIRDRLLA-EGVCDNDTVPSVSSINRIIRTKVQQ 138 (159)
T ss_dssp HHHHHHCSSSCHHHHHHHHHH-HTCSCTTTSCCHHHHHHHHHHHSCC
T ss_pred HHHHHHCccchHHHHHHHHHH-hcccccCCccCHHHHHHHHHHHhCC
Confidence 999999999999999999976 4421111248999999999986443
No 4
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=99.65 E-value=9.9e-16 Score=119.40 Aligned_cols=102 Identities=18% Similarity=0.252 Sum_probs=88.8
Q ss_pred CCcCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHhCCCC
Q psy1898 97 GRPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPGI 176 (230)
Q Consensus 97 g~~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~~~P~~ 176 (230)
++.|+.++|.+|+.++.+|.|.++||+.||||++||++|+++|.+.|.... .++|++++++..+.|..+ ..+|.+
T Consensus 4 ~~~~s~~~r~~i~~~~~~G~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~----~gr~~~l~~~~~~~i~~~-~~~~~~ 78 (141)
T 1u78_A 4 GSALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKR----APRRKALSVRDERNVIRA-ASNSCK 78 (141)
T ss_dssp SCCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSGGGTTCCCC----CCCCCSSCHHHHHHHHHH-HHHCCC
T ss_pred cccCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHcccccCCcCC----CCCCCcCCHHHHHHHHHH-HhCCCC
Confidence 567999999999999999999999999999999999999999998886532 247788999988888887 678899
Q ss_pred CHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcCCC
Q psy1898 177 FSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGGRR 212 (230)
Q Consensus 177 t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~g~ 212 (230)
++.+|.++| |+. +|.+||+|+|++.|+
T Consensus 79 s~~~i~~~l----g~~-----~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 79 TARDIRNEL----QLS-----ASKRTILNVIKRSGV 105 (141)
T ss_dssp CHHHHHHHT----TCC-----SCHHHHHHHHHHTC-
T ss_pred CHHHHHHHH----CCC-----ccHHHHHHHHHHCCC
Confidence 999988766 653 799999999999998
No 5
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=99.37 E-value=2.3e-12 Score=114.23 Aligned_cols=101 Identities=13% Similarity=0.143 Sum_probs=86.3
Q ss_pred CcCCHHHHHHHHHHHHcCCCHHHHhhhhc-------cccchhhhHHHHHhhhC--CCCcCCCCCCCCCCCCHHHHHHHHH
Q psy1898 98 RPLPNHIRLKIVEMAAAGVRPCVISRQLR-------VSHGCVSKILNRYQETG--SIRPGVIGGSKPRVATPDVEKRIEE 168 (230)
Q Consensus 98 ~~~s~~~R~rIV~l~~~G~s~~~IAr~lg-------VS~sTV~kwikRy~e~G--~v~p~~~gg~rpr~lt~~~~~~I~~ 168 (230)
.+...++|..|+.++++|.+..+||+.|+ ||++||++|+++|++ | .+.+.+++| +|+.+++ +.|.+
T Consensus 5 ~~~~~~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~~-g~~~l~~~~r~g-rp~~~~~---~~i~~ 79 (345)
T 3hot_A 5 VPNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKS-GDFDVDDKEHGK-PPKRYED---AELQA 79 (345)
T ss_dssp CCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTT-CCCCCSCCCCCC-CCCSSCH---HHHHH
T ss_pred cccHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC-CCccccCCCCCC-CCCcccH---HHHHH
Confidence 45667999999999999999999999977 999999999999997 5 356666654 7888776 55667
Q ss_pred HHHhCCCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcCCCCC
Q psy1898 169 YKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGGRRDD 214 (230)
Q Consensus 169 l~~~~P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~g~~~ 214 (230)
+++.+|..++.+|++.| + +|.+||+|+|+++|+..
T Consensus 80 ~v~~~~~~t~~~ia~~l----~-------vs~~tV~r~L~~~g~~~ 114 (345)
T 3hot_A 80 LLDEDDAQTQKQLAEQL----E-------VSQQAVSNRLREMGKIQ 114 (345)
T ss_dssp HHHHCSCCCHHHHHHHT----T-------SCHHHHHHHHHHTTCEE
T ss_pred HHHhCccchHHHHHHHH----C-------CCHHHHHHHHHHhCCee
Confidence 78899999999999876 3 59999999999999974
No 6
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=99.14 E-value=2.7e-11 Score=91.88 Aligned_cols=101 Identities=53% Similarity=0.802 Sum_probs=69.8
Q ss_pred CCCCccccCccccCCCCCChhHHHHHHHHHhcCCChhhhhhhhccccccc--------ccCCcc---c---CCCcCCHHH
Q psy1898 39 CQGRMNQLGGVFINGRPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGVN--------QLGGVF---I---NGRPLPNHI 104 (230)
Q Consensus 39 ~~~~~~~~g~~~~~g~plp~~~r~~I~e~~~~g~~~~~isr~lrvshg~~--------~l~~~~---~---~g~~~s~~~ 104 (230)
||+.+|++||+|+.+++++.++|.+|++++.+|.+..+|++.+++++.++ ..|... . ....++.+.
T Consensus 1 ~~~~~~~~gg~~~m~~~~s~~~r~~i~~~~~~g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~ 80 (128)
T 1pdn_C 1 GQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEI 80 (128)
T ss_dssp -CEEECTTSCEEETTSCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTH
T ss_pred CCchHhhhcccccCCCcCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHH
Confidence 46677777777777777777788888887777777788888887765443 001110 0 123467778
Q ss_pred HHHHHHHHHc--CCCHHHHhhhh---c-------cccchhhhHHHHH
Q psy1898 105 RLKIVEMAAA--GVRPCVISRQL---R-------VSHGCVSKILNRY 139 (230)
Q Consensus 105 R~rIV~l~~~--G~s~~~IAr~l---g-------VS~sTV~kwikRy 139 (230)
+..|+.++.+ .++..+|+..| | +|.+||++|+++.
T Consensus 81 ~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~~ 127 (128)
T 1pdn_C 81 ENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRGR 127 (128)
T ss_dssp HHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC---
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHhc
Confidence 8888887754 48999999999 7 5999999998763
No 7
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=99.09 E-value=1.9e-10 Score=90.78 Aligned_cols=106 Identities=41% Similarity=0.643 Sum_probs=80.9
Q ss_pred CCCCCCCccccCccccCCCCCChhHHHHHHHHHhcCCChhhhhhhhccccccc--------ccCCcc---cC---CCcCC
Q psy1898 36 GSSCQGRMNQLGGVFINGRPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGVN--------QLGGVF---IN---GRPLP 101 (230)
Q Consensus 36 ~~~~~~~~~~~g~~~~~g~plp~~~r~~I~e~~~~g~~~~~isr~lrvshg~~--------~l~~~~---~~---g~~~s 101 (230)
+-.|++++|++||+|+.++.++.++|.+|++++.+|.+..+|++.+++++.++ ..|... .. ...++
T Consensus 13 ~~~~~~~~~~~gg~~~~~~~~s~e~r~~iv~~~~~G~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~ 92 (149)
T 1k78_A 13 SRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVAT 92 (149)
T ss_dssp ------CBCTTSCBCCTTSCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSC
T ss_pred ccCCCCCccCCCceecCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCC
Confidence 34577899999999999999999999999999999999999999999977654 011111 11 33578
Q ss_pred HHHHHHHHHHHHc--CCCHHHHhhhh--------c--cccchhhhHHHHHhh
Q psy1898 102 NHIRLKIVEMAAA--GVRPCVISRQL--------R--VSHGCVSKILNRYQE 141 (230)
Q Consensus 102 ~~~R~rIV~l~~~--G~s~~~IAr~l--------g--VS~sTV~kwikRy~e 141 (230)
.+....|+.++.+ ..+..+|+..| + +|.+||++|++++.+
T Consensus 93 ~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~ 144 (149)
T 1k78_A 93 PKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQ 144 (149)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHhc
Confidence 8899999988765 48999999988 6 799999999987553
No 8
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=98.90 E-value=5e-09 Score=83.62 Aligned_cols=108 Identities=39% Similarity=0.584 Sum_probs=87.7
Q ss_pred CCCCCccccCccccCCCCCChhHHHHHHHHHhcCCChhhhhhhhccccccc--ccC-----Cccc----C---CCcCCHH
Q psy1898 38 SCQGRMNQLGGVFINGRPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGVN--QLG-----GVFI----N---GRPLPNH 103 (230)
Q Consensus 38 ~~~~~~~~~g~~~~~g~plp~~~r~~I~e~~~~g~~~~~isr~lrvshg~~--~l~-----~~~~----~---g~~~s~~ 103 (230)
.|..+.+++|+.|+.++.++.++|.+|++++.+|.+..+|+++|+++..++ -+. +.+. . ...++.+
T Consensus 8 ~~~~~~~~~g~~~~~~~~~s~e~r~~ii~l~~~G~s~~~IA~~lgis~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~ 87 (159)
T 2k27_A 8 SGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPK 87 (159)
T ss_dssp CSCSSCCCCCCTTSSSCSSCHHHHHHHHHHHHHTCCHHHHHHHHTCCSHHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTT
T ss_pred hcchhhhhcCCcCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCHH
Confidence 456789999999999999999999999999999999999999999987664 111 1111 1 2347778
Q ss_pred HHHHHHHHHHc--CCCHHHHhhhh----------ccccchhhhHHHHHhhhCCC
Q psy1898 104 IRLKIVEMAAA--GVRPCVISRQL----------RVSHGCVSKILNRYQETGSI 145 (230)
Q Consensus 104 ~R~rIV~l~~~--G~s~~~IAr~l----------gVS~sTV~kwikRy~e~G~v 145 (230)
....|+.++.+ .++..+|+..| .+|.+||++|+++|...|.-
T Consensus 88 ~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~~ 141 (159)
T 2k27_A 88 VVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFN 141 (159)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCSC
T ss_pred HHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCCcc
Confidence 88889888764 49999999987 47999999999999988854
No 9
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=98.81 E-value=3.5e-09 Score=67.23 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=43.5
Q ss_pred CcCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhhhCC
Q psy1898 98 RPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQETGS 144 (230)
Q Consensus 98 ~~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~ 144 (230)
+.++.+.+..|+.++.+|++..+||+.|+||++||++|+++|++.|.
T Consensus 4 ~~l~~~~~~~i~~~~~~g~s~~~IA~~lgis~~Tv~~~~~~~~~~g~ 50 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGT 50 (51)
T ss_dssp CCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCSTTTTC
T ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhhHHhcCC
Confidence 46889999999999999999999999999999999999999988764
No 10
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=98.63 E-value=5.8e-07 Score=69.06 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=77.6
Q ss_pred CCcCCHHHHHHHHHHH-HcCCCHH-HHhhhhccccchhhhHHHHHhh-------hCCCCcCCCCCCCCCCCCHHHHHHHH
Q psy1898 97 GRPLPNHIRLKIVEMA-AAGVRPC-VISRQLRVSHGCVSKILNRYQE-------TGSIRPGVIGGSKPRVATPDVEKRIE 167 (230)
Q Consensus 97 g~~~s~~~R~rIV~l~-~~G~s~~-~IAr~lgVS~sTV~kwikRy~e-------~G~v~p~~~gg~rpr~lt~~~~~~I~ 167 (230)
.+.|+.++|..||.++ +.|.+.. +||+.|||+++||++|++.+.. .+...+... + ......++.++.|.
T Consensus 5 r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~~~~~~~~~~~~~~k-r-~r~~~~~~~E~~L~ 82 (131)
T 1hlv_A 5 RRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYGVASTCRK-T-NKLSPYDKLEGLLI 82 (131)
T ss_dssp SCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHHHHHHHHHHGGGGGTCC-C-CCCCTTHHHHHHHH
T ss_pred ceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchhhhcchhhhccccchhhc-c-cCCCCCHHHHHHHH
Confidence 5679999999999998 6776655 9999999999999999998764 343222111 1 23445778888888
Q ss_pred HHHHh----CCCCCHHH---HHHHHHHhhCCCCCCCCCCHhHHHHHHHcCC
Q psy1898 168 EYKKT----NPGIFSWE---IRDRLVKQDGICDKNSAPSVSSISRLLRGGR 211 (230)
Q Consensus 168 ~l~~~----~P~~t~~e---I~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~g 211 (230)
.++.+ +-..+... .+..+....|+. +-.+|..-++++.++||
T Consensus 83 ~Wi~~~~~~g~pvs~~~I~~kA~~i~~~~g~~--~f~~S~gWl~~F~~Rh~ 131 (131)
T 1hlv_A 83 AWFQQIRAAGLPVKGIILKEKALRIAEELGMD--DFTASNGWLDRFRRRRS 131 (131)
T ss_dssp HHHHHHGGGTCCCCHHHHHHHHHHHHHHHTCT--TCCCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHhCCC--CCCCCHHHHHHHHHhcC
Confidence 88754 22355443 344455445653 23579999999999885
No 11
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=98.54 E-value=7.7e-08 Score=70.69 Aligned_cols=47 Identities=11% Similarity=0.227 Sum_probs=43.2
Q ss_pred CcCCHHHHHHHHHHHH-c-CCCHHHHhhhhccccchhhhHHHHHhhhCC
Q psy1898 98 RPLPNHIRLKIVEMAA-A-GVRPCVISRQLRVSHGCVSKILNRYQETGS 144 (230)
Q Consensus 98 ~~~s~~~R~rIV~l~~-~-G~s~~~IAr~lgVS~sTV~kwikRy~e~G~ 144 (230)
+.||.+++..+|.++. . |.|..+||+.||||++||++|+++|.+.|.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHCCCST
T ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHHhhcCc
Confidence 5799999999999885 5 899999999999999999999999998775
No 12
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=98.49 E-value=2.3e-07 Score=67.21 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=43.8
Q ss_pred CCcCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhhhCC
Q psy1898 97 GRPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQETGS 144 (230)
Q Consensus 97 g~~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~ 144 (230)
.+.|+.+++..++.++.+|.+..+||+.||||++||++|+++|.+...
T Consensus 20 ~~~ys~e~k~~~v~~~~~g~s~~~iA~~~gIs~sTl~rW~k~~~~~~~ 67 (87)
T 2elh_A 20 LRSLTPRDKIHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDKLRF 67 (87)
T ss_dssp CSSCCHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHhccc
Confidence 458999999999999988999999999999999999999999987653
No 13
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=98.45 E-value=1.3e-07 Score=63.55 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=42.5
Q ss_pred CCcCCHHHHHHHHHHHHcCCC----HHHHhhhhccccchhhhHHHHHhhhC
Q psy1898 97 GRPLPNHIRLKIVEMAAAGVR----PCVISRQLRVSHGCVSKILNRYQETG 143 (230)
Q Consensus 97 g~~~s~~~R~rIV~l~~~G~s----~~~IAr~lgVS~sTV~kwikRy~e~G 143 (230)
.+.||.+++.+|++++..|.| ..+||+.|||+++||++|+++|++.+
T Consensus 3 r~~ys~efK~~~~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~~~~ 53 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCESNLR 53 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTHHHHH
T ss_pred CCcCCHHHHHHHHHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 357999999999888888999 99999999999999999999998654
No 14
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=98.28 E-value=4e-07 Score=68.03 Aligned_cols=50 Identities=10% Similarity=0.189 Sum_probs=43.9
Q ss_pred CCCcCCHHHHHHHHHHHH-cC-------CCHHHHhhhhccccchhhhHHHHHhhhCCC
Q psy1898 96 NGRPLPNHIRLKIVEMAA-AG-------VRPCVISRQLRVSHGCVSKILNRYQETGSI 145 (230)
Q Consensus 96 ~g~~~s~~~R~rIV~l~~-~G-------~s~~~IAr~lgVS~sTV~kwikRy~e~G~v 145 (230)
..+.||.+++..+|.++. .| .+..+||+.||||++||++|+++|.+.|..
T Consensus 3 ~~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~~~~~~ 60 (108)
T 2rn7_A 3 KNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGG 60 (108)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHHHhcccc
Confidence 456799999999999874 34 799999999999999999999999987753
No 15
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=98.23 E-value=3.1e-06 Score=65.01 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=67.3
Q ss_pred CCCChhHHHHHHHHHhcCCChhhhhhhhccccccc--ccCCcc------cC--CCcCCHHHHHHHHHHHHc-CCCHHHHh
Q psy1898 54 RPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGVN--QLGGVF------IN--GRPLPNHIRLKIVEMAAA-GVRPCVIS 122 (230)
Q Consensus 54 ~plp~~~r~~I~e~~~~g~~~~~isr~lrvshg~~--~l~~~~------~~--g~~~s~~~R~rIV~l~~~-G~s~~~IA 122 (230)
..++.+.|.+|+.++.+|.+..+|++.++++..++ -+..+- .. ...++.+....|+.+..+ .+|..+|+
T Consensus 5 ~~~s~~~r~~i~~~~~~G~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~~~i~ 84 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIR 84 (141)
T ss_dssp CCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCHHHHH
Confidence 45779999999999999999999999999987664 111110 01 234788888888877554 49999999
Q ss_pred hhhc--cccchhhhHHHHH
Q psy1898 123 RQLR--VSHGCVSKILNRY 139 (230)
Q Consensus 123 r~lg--VS~sTV~kwikRy 139 (230)
..|+ +|.+||++|+++.
T Consensus 85 ~~lg~~~s~~tV~r~l~~~ 103 (141)
T 1u78_A 85 NELQLSASKRTILNVIKRS 103 (141)
T ss_dssp HHTTCCSCHHHHHHHHHHT
T ss_pred HHHCCCccHHHHHHHHHHC
Confidence 9999 7999999999863
No 16
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=98.11 E-value=9.2e-07 Score=56.43 Aligned_cols=42 Identities=7% Similarity=0.103 Sum_probs=36.3
Q ss_pred cCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 99 PLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 99 ~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
.++.+.+..|+.++.+|.+..+||+.||||++||++|++++.
T Consensus 5 ~~~~~~~~~i~~l~~~g~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTTCCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 456677788888999999999999999999999999987543
No 17
>4fcy_A Transposase; rnaseh, DDE transposase, DNA binding protein-DNA complex; HET: DNA; 3.71A {Enterobacteria phage MU} PDB: 2ezk_A 2ezl_A 2ezh_A 2ezi_A
Probab=97.99 E-value=3e-05 Score=72.56 Aligned_cols=104 Identities=13% Similarity=0.041 Sum_probs=65.6
Q ss_pred HHHHHHHH----HHHcCCCH----HHHhhhhccccchhhhHHHHHhhhCC------CCcCCC---CCCCCCCCCHHHHHH
Q psy1898 103 HIRLKIVE----MAAAGVRP----CVISRQLRVSHGCVSKILNRYQETGS------IRPGVI---GGSKPRVATPDVEKR 165 (230)
Q Consensus 103 ~~R~rIV~----l~~~G~s~----~~IAr~lgVS~sTV~kwikRy~e~G~------v~p~~~---gg~rpr~lt~~~~~~ 165 (230)
+.|..+|. +...|.+. .++|+.+|||.+|+++|+++|+..+. +.|+.. .+.+...++++..+.
T Consensus 32 ~~r~~~i~~v~~l~~~g~~~~~a~~~~a~~~gvS~~Tl~rW~~~y~~~~~~~gl~~L~~~~~~~~~~~~~~~~~~~~~~~ 111 (529)
T 4fcy_A 32 EKWLPAVQAADEMLNQGISTKTAFATVAGHYQVSASTLRDKYYQVQKFAKPDWAAALVDGRGASRRNVHKSEFDEDAWQF 111 (529)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSCGGGHHHHHC------------CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCcccCceecccCCCCCCCCCCcCcCCHHHHHH
Confidence 34445554 44567764 45689999999999999999986542 233322 112344567888877
Q ss_pred HHHHHHhCCCCCHH----HHHHHHHHhhCCCCCCCCCCHhHHHHHHHcCC
Q psy1898 166 IEEYKKTNPGIFSW----EIRDRLVKQDGICDKNSAPSVSSISRLLRGGR 211 (230)
Q Consensus 166 I~~l~~~~P~~t~~----eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~g 211 (230)
|.......+..+.. ++...+.. .|+. .||.+||+|+|++.+
T Consensus 112 i~~~yl~~~~~s~~~~~~~~~~~~~~-~g~~----~PS~~tv~r~l~~~~ 156 (529)
T 4fcy_A 112 LIADYLRPEKPAFRKCYERLELAARE-HGWS----IPSRATAFRRIQQLD 156 (529)
T ss_dssp HHHHHTSTTCCCHHHHHHHHHHHHHH-HTCC----CCCHHHHHHHHHHHC
T ss_pred HHHHHhCcCCCCHHHHHHHHHHHHHH-cCCC----CCCHHHHHHHHHhcC
Confidence 77665555555544 45555544 6764 579999999998754
No 18
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=97.67 E-value=5.3e-05 Score=56.07 Aligned_cols=51 Identities=10% Similarity=0.052 Sum_probs=45.2
Q ss_pred CCCcCCHHHHHHHHHHHHcC-CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 96 NGRPLPNHIRLKIVEMAAAG-VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 96 ~g~~~s~~~R~rIV~l~~~G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
+-+.++.+++..||.....| .|..++|++++||.+++++|.+.|.+.|...
T Consensus 29 ~~rrWs~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~~~~G~~~ 80 (95)
T 2jrt_A 29 DTRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAVAAHGEKA 80 (95)
T ss_dssp SCCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHTTTCCTTS
T ss_pred hhhccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhHHH
Confidence 45668899999999987765 8999999999999999999999999998653
No 19
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=97.57 E-value=4.2e-05 Score=49.90 Aligned_cols=37 Identities=24% Similarity=0.222 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHH
Q psy1898 102 NHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNR 138 (230)
Q Consensus 102 ~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikR 138 (230)
.+....|+.++.+|.|..+||+.||||++||++|+++
T Consensus 18 ~~~~~~i~~l~~~g~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 18 DDLVSVAHELAKMGYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 5666777778889999999999999999999999853
No 20
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=97.55 E-value=0.0017 Score=50.85 Aligned_cols=116 Identities=11% Similarity=0.024 Sum_probs=76.3
Q ss_pred CCcCCHHHHHHHHHHH-H-c-CCCHHHHhh----hh--ccccchhhhHHHHHhhhCCC---CcCCCCCCCCCCCCHHHHH
Q psy1898 97 GRPLPNHIRLKIVEMA-A-A-GVRPCVISR----QL--RVSHGCVSKILNRYQETGSI---RPGVIGGSKPRVATPDVEK 164 (230)
Q Consensus 97 g~~~s~~~R~rIV~l~-~-~-G~s~~~IAr----~l--gVS~sTV~kwikRy~e~G~v---~p~~~gg~rpr~lt~~~~~ 164 (230)
-..|+.+.|..|++.+ + . +++..++|+ .| +|+++||++|++...+--.. .+..... ......+++++
T Consensus 9 R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~~l~~~~~~~~~~kr-~r~~~~~~le~ 87 (144)
T 1iuf_A 9 RRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYSYLDNTVEKPWDVKR-NRPPKYPLLEA 87 (144)
T ss_dssp SSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHHHTTTSCSSSSSSSC-CCCCSCHHHHH
T ss_pred CccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHHHhhhcccccccccC-CCCCCCHHHHH
Confidence 4678999999999999 3 3 489999999 99 89999999999985542211 1112211 23345788888
Q ss_pred HHHHHHHh---CCCCCHHHHHHHHHH---hhCC--CCCCCCCCHhHHHHHHHcCCCC
Q psy1898 165 RIEEYKKT---NPGIFSWEIRDRLVK---QDGI--CDKNSAPSVSSISRLLRGGRRD 213 (230)
Q Consensus 165 ~I~~l~~~---~P~~t~~eI~~~L~~---~~Gi--~~~~~~vS~sTV~R~Lr~~g~~ 213 (230)
.+..++.+ +..+|-..|++.... .... ....-..|..-+.++-++|||.
T Consensus 88 ~L~~Wi~~~~~~~~it~~~I~~kA~~i~~~l~~~~~~~~f~~S~GWL~~Fk~Rh~i~ 144 (144)
T 1iuf_A 88 ALFEWQVQQGDDATLSGETIKRAAAILWHKIPEYQDQPVPNFSNGWLEGFRKRHILH 144 (144)
T ss_dssp HHHHHHHHTCTTCCCSSHHHHHHHHHHHHHCSSSSCCCCCSCCSHHHHHHHHHTSCC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhccCCCCCCCcCHHHHHHHHHHcCCC
Confidence 88887766 334664444433322 2210 1122356888999999999874
No 21
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=97.38 E-value=3.7e-05 Score=58.79 Aligned_cols=100 Identities=13% Similarity=0.073 Sum_probs=77.8
Q ss_pred HHHHHHHHHHH-cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHH
Q psy1898 103 HIRLKIVEMAA-AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSWEI 181 (230)
Q Consensus 103 ~~R~rIV~l~~-~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~~~P~~t~~eI 181 (230)
+.+.+|+..+. ++.++.++|..|+++..++..|++...+.|.+.+...+.--.+..-.+..+.|..+..+++.+|..++
T Consensus 7 ~l~~~i~~~~~~~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~it~ae~ 86 (121)
T 2pjp_A 7 AIWQKAEPLFGDEPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQECGSTCAADF 86 (121)
T ss_dssp HHHHHHGGGCSSSCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSSEEHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCceECHHHHHHHHHHHHHHHHHCCCccHHHH
Confidence 56777887775 56789999999999999999999999999988654332112233344556677778888999999999
Q ss_pred HHHHHHhhCCCCCCCCCCHh---HHHHHHHcCCCC
Q psy1898 182 RDRLVKQDGICDKNSAPSVS---SISRLLRGGRRD 213 (230)
Q Consensus 182 ~~~L~~~~Gi~~~~~~vS~s---TV~R~Lr~~g~~ 213 (230)
++.| |+ |+. ++..+|.+.|+-
T Consensus 87 Rd~l----g~-------sRK~ai~lLE~~Dr~g~T 110 (121)
T 2pjp_A 87 RDRL----GV-------GRKLAIQILEYFDRIGFT 110 (121)
T ss_dssp HHHH----TS-------CHHHHHHHHHHHHHHTSE
T ss_pred HHHH----CC-------cHHHHHHHHHHHhhcCCe
Confidence 9987 43 888 999999888764
No 22
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=97.04 E-value=0.00046 Score=51.53 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcC-CCHHHHhhhhccccchhhhHHHHHhhhCCC
Q psy1898 102 NHIRLKIVEMAAAG-VRPCVISRQLRVSHGCVSKILNRYQETGSI 145 (230)
Q Consensus 102 ~~~R~rIV~l~~~G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v 145 (230)
...+..||....+| +|..++|+.|+||.++|.+|.+.|++.|.-
T Consensus 36 a~rK~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y~~~G~~ 80 (101)
T 2oa4_A 36 ASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALAEHGKD 80 (101)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhHH
Confidence 34578888877665 999999999999999999999999999864
No 23
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=96.96 E-value=0.00054 Score=53.68 Aligned_cols=44 Identities=9% Similarity=0.146 Sum_probs=39.9
Q ss_pred CcCCHHHHHHHHHHHHcCCCHHHHhhhhcc-ccchhhhHHHHHhh
Q psy1898 98 RPLPNHIRLKIVEMAAAGVRPCVISRQLRV-SHGCVSKILNRYQE 141 (230)
Q Consensus 98 ~~~s~~~R~rIV~l~~~G~s~~~IAr~lgV-S~sTV~kwikRy~e 141 (230)
..|+.++-.+|++++..|.|.++||+.++| |.+||++|++++.+
T Consensus 11 tk~t~e~~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~~~e 55 (140)
T 4dyq_A 11 SDYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHED 55 (140)
T ss_dssp CSCCTTHHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHHCHH
T ss_pred CCCCHHHHHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHcCHH
Confidence 458889999999999999999999999999 99999999998544
No 24
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=96.96 E-value=0.00059 Score=54.75 Aligned_cols=42 Identities=5% Similarity=-0.013 Sum_probs=35.6
Q ss_pred CCcCCHHHHHHHHHHHH-c--------CCCHHHHhhhhccccchhhhHHHH
Q psy1898 97 GRPLPNHIRLKIVEMAA-A--------GVRPCVISRQLRVSHGCVSKILNR 138 (230)
Q Consensus 97 g~~~s~~~R~rIV~l~~-~--------G~s~~~IAr~lgVS~sTV~kwikR 138 (230)
-+.|+.+++..++.+.. . |.|..+||+.+|||++|+|+|.+.
T Consensus 21 ~r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 21 KQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp HTTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 35588899999987643 2 689999999999999999999984
No 25
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=96.91 E-value=0.0012 Score=44.47 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=35.5
Q ss_pred cCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhh
Q psy1898 99 PLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQE 141 (230)
Q Consensus 99 ~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e 141 (230)
.+|...|.-+...+.+|.|..+||..+|+|.+||++++.+...
T Consensus 15 ~L~~~~r~il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARD 57 (70)
T ss_dssp SSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3666677555556789999999999999999999999988653
No 26
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.84 E-value=0.00042 Score=50.22 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHcC-CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHH
Q psy1898 102 NHIRLKIVEMAAAG-VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEY 169 (230)
Q Consensus 102 ~~~R~rIV~l~~~G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l 169 (230)
...|.+|+.++.+| .+..+||+.+++|++||++-++...+.|.+.....+...--.++++..+.+...
T Consensus 22 ~~~r~~Il~~L~~~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~~~ 90 (98)
T 3jth_A 22 NERRLQILCMLHNQELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAMIKL 90 (98)
T ss_dssp SHHHHHHHHHTTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHHHHH
Confidence 37788999877655 899999999999999999999999999988544332222234444444444333
No 27
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.82 E-value=0.00076 Score=49.25 Aligned_cols=48 Identities=19% Similarity=0.296 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcC-CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCC
Q psy1898 102 NHIRLKIVEMAAAG-VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 149 (230)
Q Consensus 102 ~~~R~rIV~l~~~G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~ 149 (230)
...|.+|+..+.+| .+..+||+.+++|++||++-++...+.|.+...+
T Consensus 22 ~~~r~~Il~~L~~~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~ 70 (102)
T 3pqk_A 22 HPVRLMLVCTLVEGEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRR 70 (102)
T ss_dssp SHHHHHHHHHHHTCCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEEC
T ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 47889999987766 8999999999999999999999999999875433
No 28
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=96.76 E-value=0.00022 Score=58.35 Aligned_cols=45 Identities=11% Similarity=0.000 Sum_probs=0.0
Q ss_pred CcCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhhh
Q psy1898 98 RPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQET 142 (230)
Q Consensus 98 ~~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e~ 142 (230)
.+++.+...+|..++.+|.|..+||+.||||++|||+|++.+.+.
T Consensus 141 ~~~~~~~~~~i~~l~~~G~s~~~Ia~~l~vs~~Tvyr~l~~~~~~ 185 (193)
T 3uj3_X 141 PKLTKAEWEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPAKRAH 185 (193)
T ss_dssp ---------------------------------------------
T ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHhhhc
Confidence 345666777888999999999999999999999999999876543
No 29
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=96.71 E-value=0.0015 Score=48.79 Aligned_cols=37 Identities=14% Similarity=0.212 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcC-CCHHHHhhhhccccchhhhHHHHHh
Q psy1898 103 HIRLKIVEMAAAG-VRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 103 ~~R~rIV~l~~~G-~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
..|..|..++.+| +|.++||+.+|||++||+|. +++-
T Consensus 45 ~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L 82 (101)
T 1jhg_A 45 GTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSL 82 (101)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHH
Confidence 3457777777788 99999999999999999999 6654
No 30
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=96.68 E-value=0.0026 Score=39.77 Aligned_cols=48 Identities=17% Similarity=0.208 Sum_probs=34.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcCCCCC
Q psy1898 154 KPRVATPDVEKRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGGRRDD 214 (230)
Q Consensus 154 rpr~lt~~~~~~I~~l~~~~P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~g~~~ 214 (230)
||+.++++..+.+..+..+. .+..+|++. .|+ |.+||+++|++.++.+
T Consensus 2 Rp~~~~~~~~~~i~~l~~~g--~s~~~ia~~----lgv-------s~~Tv~r~l~~~~~~~ 49 (52)
T 1jko_C 2 RPRAINKHEQEQISRLLEKG--HPRQQLAII----FGI-------GVSTLYRYFPASSIKK 49 (52)
T ss_dssp CCCSSCTTHHHHHHHHHHTT--CCHHHHHHT----TSC-------CHHHHHHHSCTTC---
T ss_pred CCCCCCHHHHHHHHHHHHcC--CCHHHHHHH----HCC-------CHHHHHHHHHHccccc
Confidence 67778888777787776543 788777764 454 9999999999988754
No 31
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=96.63 E-value=0.0021 Score=46.15 Aligned_cols=41 Identities=22% Similarity=0.196 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 100 LPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 100 ~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
++...|.-++..+.+|+|..+||+.+|||.+||..++.|.+
T Consensus 38 L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 56666766666678999999999999999999999988754
No 32
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=96.62 E-value=0.0025 Score=48.16 Aligned_cols=42 Identities=19% Similarity=0.086 Sum_probs=36.4
Q ss_pred cCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 99 PLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 99 ~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
.+|...|.-+...+.+|+|..+||..+|||.+||++++.+..
T Consensus 22 ~L~~~~r~vl~l~y~~g~s~~EIA~~lgiS~~tV~~~l~ra~ 63 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKRTE 63 (113)
T ss_dssp GSCHHHHHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 467777776666778999999999999999999999998865
No 33
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.58 E-value=0.00072 Score=48.48 Aligned_cols=67 Identities=18% Similarity=0.117 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHcC--CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHH
Q psy1898 103 HIRLKIVEMAAAG--VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEY 169 (230)
Q Consensus 103 ~~R~rIV~l~~~G--~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l 169 (230)
..|.+|+..+.++ .+..+||+.+++|++||++.+++..+.|.+.....++..--.++++....+...
T Consensus 24 ~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~~~ 92 (99)
T 3cuo_A 24 PKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIAT 92 (99)
T ss_dssp HHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHH
Confidence 6678888877553 899999999999999999999999999987533222212223455444444433
No 34
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.57 E-value=0.0006 Score=51.41 Aligned_cols=71 Identities=13% Similarity=0.196 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHcC-CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHH
Q psy1898 100 LPNHIRLKIVEMAAAG-VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYK 170 (230)
Q Consensus 100 ~s~~~R~rIV~l~~~G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~ 170 (230)
++...|.+|+.++.+| .+..+||+.+++|++||++-++...+.|.+...+.+...--.++++..+.+..++
T Consensus 15 l~~~~R~~Il~~L~~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~~ 86 (118)
T 3f6o_A 15 LADPTRRAVLGRLSRGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWL 86 (118)
T ss_dssp HTSHHHHHHHHHHHTCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHHHHH
Confidence 4457899999987765 8999999999999999999999999999885433322233455665555554444
No 35
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=96.56 E-value=0.00027 Score=52.62 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHcC-CCHHHHhhhhccccchhhhHHHHHhhhCCCCcC
Q psy1898 103 HIRLKIVEMAAAG-VRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 148 (230)
Q Consensus 103 ~~R~rIV~l~~~G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~ 148 (230)
..|.+|+.++.+| .+..+||+.+++|++||++.++...+.|.+...
T Consensus 25 ~~r~~IL~~L~~~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~ 71 (108)
T 2kko_A 25 GRRLQILDLLAQGERAVEAIATATGMNLTTASANLQALKSGGLVEAR 71 (108)
T ss_dssp STTHHHHHHHTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 4567788776654 899999999999999999999999999988543
No 36
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=96.55 E-value=0.0021 Score=42.28 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=31.6
Q ss_pred HHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhh
Q psy1898 106 LKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQE 141 (230)
Q Consensus 106 ~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e 141 (230)
..|+.++.+|++.++||+.+++|.+||..++.+..+
T Consensus 4 ~~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 4 RQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HHHHHHHHTSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 456777889999999999999999999999988653
No 37
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.53 E-value=0.0011 Score=48.83 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHc-CCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHH
Q psy1898 103 HIRLKIVEMAAA-GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYK 170 (230)
Q Consensus 103 ~~R~rIV~l~~~-G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~ 170 (230)
..|.+|+..+.. +.+..+||+.+++|++||++.+++..+.|.+.....++..--.+++...+.+...+
T Consensus 21 ~~r~~IL~~L~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~~~~ 89 (114)
T 2oqg_A 21 ETRWEILTELGRADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGREIRYRALGAELNKTARTL 89 (114)
T ss_dssp HHHHHHHHHHHHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHHHHH
Confidence 678888887655 49999999999999999999999999999885432221122345555544444443
No 38
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.47 E-value=0.0022 Score=43.81 Aligned_cols=45 Identities=13% Similarity=0.299 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHc---CCCHHHHhhhhccccchhhhHHHHHhhhCCCCc
Q psy1898 103 HIRLKIVEMAAA---GVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 147 (230)
Q Consensus 103 ~~R~rIV~l~~~---G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p 147 (230)
+.+.+|++++.+ .++..+||+.|+||++||++.++..++.|.+..
T Consensus 10 ~~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 10 NLEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 467788887753 389999999999999999999999999998743
No 39
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=96.44 E-value=0.0038 Score=42.79 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=34.7
Q ss_pred cCCHHHHHHHHHHHH----cCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 99 PLPNHIRLKIVEMAA----AGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 99 ~~s~~~R~rIV~l~~----~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
.+|...|.-+...+- +|+|..+||..+|+|.+||..++.+..
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~ 55 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKAL 55 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 467777766666665 899999999999999999999988754
No 40
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=96.43 E-value=0.0084 Score=39.63 Aligned_cols=44 Identities=23% Similarity=0.138 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcCCCC
Q psy1898 164 KRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGGRRD 213 (230)
Q Consensus 164 ~~I~~l~~~~P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~g~~ 213 (230)
..|..++..++..++.||.+.|.+ .+.. ||.+||+|.|+..|+.
T Consensus 8 ~~i~~ll~~~~~~t~~el~~~l~~-~~~~-----vs~~Tv~R~L~~lg~v 51 (64)
T 2p5k_A 8 IKIREIITSNEIETQDELVDMLKQ-DGYK-----VTQATVSRDIKELHLV 51 (64)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHH-TTCC-----CCHHHHHHHHHHHTCE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-hCCC-----cCHHHHHHHHHHcCCE
Confidence 345667777889999999999977 6664 8999999999988764
No 41
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=96.42 E-value=0.0042 Score=42.09 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=34.4
Q ss_pred CcCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 98 RPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 98 ~~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
..++...+ .|+.++.+|.+..+||+.+++|.+||+.++++-.
T Consensus 10 ~~L~~~e~-~il~~~~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 10 PLLTKRER-EVFELLVQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp CCCCHHHH-HHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34665555 5666678899999999999999999999999854
No 42
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=96.40 E-value=0.0032 Score=42.61 Aligned_cols=43 Identities=9% Similarity=0.003 Sum_probs=34.3
Q ss_pred cCCHHHHHHHHHHH----HcCCCHHHHhhhhccccchhhhHHHHHhh
Q psy1898 99 PLPNHIRLKIVEMA----AAGVRPCVISRQLRVSHGCVSKILNRYQE 141 (230)
Q Consensus 99 ~~s~~~R~rIV~l~----~~G~s~~~IAr~lgVS~sTV~kwikRy~e 141 (230)
.+|...|.-+...+ .+|+|..+||+.+|||.+||..++.+-..
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 36666665555555 48999999999999999999999988654
No 43
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=96.35 E-value=0.0041 Score=46.76 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 102 NHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 102 ~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
...|.+|+.++.+|.|.++|++.+|+|.+||+|+.+-.+
T Consensus 45 laqR~~Ia~lL~~G~SyreIa~~tG~StaTIsRv~r~L~ 83 (107)
T 3frw_A 45 LSQRFEVAKMLTDKRTYLDISEKTGASTATISRVNRSLN 83 (107)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCccHHHHHHHHHHHH
Confidence 477999999999999999999999999999999876554
No 44
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=96.22 E-value=0.0037 Score=44.88 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHH-cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC
Q psy1898 102 NHIRLKIVEMAA-AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 148 (230)
Q Consensus 102 ~~~R~rIV~l~~-~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~ 148 (230)
...+.+|+.++. .|.+..+||+.||||+++|++-+.+..+.|.+...
T Consensus 16 ~~~~~~IL~lL~~~g~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEGATAAQLTRQLNMEKREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp HHHHHHHHHHHSSSTEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 478899998765 57999999999999999999999999999988543
No 45
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.22 E-value=0.0055 Score=42.92 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=36.6
Q ss_pred HHHHHHHHHc--CCCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 105 RLKIVEMAAA--GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 105 R~rIV~l~~~--G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
|.+|+.++.. ..+..+||+.|+||++||++.++...+.|.+.
T Consensus 2 r~~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 2 KNEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 5677776653 49999999999999999999999999999875
No 46
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.22 E-value=0.0023 Score=47.15 Aligned_cols=46 Identities=24% Similarity=0.311 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHcC-CCHHHHhhhhccccchhhhHHHHHhhhCCCCc
Q psy1898 102 NHIRLKIVEMAAAG-VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 147 (230)
Q Consensus 102 ~~~R~rIV~l~~~G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p 147 (230)
...|.+|+.++..+ .+..+||+.+++|++||++.++...+.|.+..
T Consensus 25 ~~~r~~IL~~L~~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~ 71 (106)
T 1r1u_A 25 DYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKA 71 (106)
T ss_dssp SHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 36788898876554 89999999999999999999999999998753
No 47
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=96.20 E-value=0.0058 Score=43.47 Aligned_cols=43 Identities=7% Similarity=-0.020 Sum_probs=35.1
Q ss_pred cCCHHHHHHHHHHHH----cCCCHHHHhhhhccccchhhhHHHHHhh
Q psy1898 99 PLPNHIRLKIVEMAA----AGVRPCVISRQLRVSHGCVSKILNRYQE 141 (230)
Q Consensus 99 ~~s~~~R~rIV~l~~----~G~s~~~IAr~lgVS~sTV~kwikRy~e 141 (230)
.+|...|.-+...+- +|+|..+||..+|||.+||..++.+-..
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 366677766666565 8999999999999999999999988653
No 48
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=96.18 E-value=0.0065 Score=44.76 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=35.1
Q ss_pred CcCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 98 RPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 98 ~~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
..+|...+ .|+.++.+|++.++||+.++||.+||..++.+-.
T Consensus 33 ~~Lt~re~-~Vl~l~~~G~s~~EIA~~L~iS~~TV~~~l~ri~ 74 (99)
T 1p4w_A 33 KRLSPKES-EVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAM 74 (99)
T ss_dssp SSCCHHHH-HHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44666666 5667778999999999999999999999998754
No 49
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=96.18 E-value=0.0053 Score=46.20 Aligned_cols=42 Identities=19% Similarity=0.096 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 99 PLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 99 ~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
.+|...|.-+...+.+|+|..+||..+|||.+||++++.|-+
T Consensus 25 ~L~~~~r~vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l~ra~ 66 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTG 66 (113)
T ss_dssp GSCHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 366677766666678999999999999999999999998854
No 50
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=96.16 E-value=0.00088 Score=53.14 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHcC-CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHH
Q psy1898 100 LPNHIRLKIVEMAAAG-VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKK 171 (230)
Q Consensus 100 ~s~~~R~rIV~l~~~G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~ 171 (230)
++...|.+|+.++..| .+..+||+.++++++||++-++..++.|.+...+.+...--.++++..+.+..++.
T Consensus 55 L~~p~R~~IL~~L~~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~~~l~ 127 (151)
T 3f6v_A 55 AAEPTRRRLVQLLTSGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRALFD 127 (151)
T ss_dssp HTSHHHHHHHHHGGGCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHHH
Confidence 4458899999977654 99999999999999999999999999998854433222334567776666666554
No 51
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=96.16 E-value=0.0049 Score=43.48 Aligned_cols=42 Identities=21% Similarity=0.357 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhh
Q psy1898 99 PLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQE 141 (230)
Q Consensus 99 ~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e 141 (230)
.++...+ .|+.++.+|++.++||+.++||.+||..++.+-.+
T Consensus 21 ~Lt~~e~-~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 21 QLTPRER-DILKLIAQGLPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp GSCHHHH-HHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3555555 56666789999999999999999999999988654
No 52
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=96.13 E-value=0.0014 Score=49.38 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHcC-CCHHHHhhhhccccchhhhHHHHHhhhCCCCcC
Q psy1898 101 PNHIRLKIVEMAAAG-VRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 148 (230)
Q Consensus 101 s~~~R~rIV~l~~~G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~ 148 (230)
+...|.+|+.++..| .+..+||+.+++|++||++.++...+.|.+...
T Consensus 19 ~~~~r~~IL~~L~~~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~ 67 (118)
T 2jsc_A 19 ADPTRCRILVALLDGVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVAT 67 (118)
T ss_dssp SSHHHHHHHHHHHTTCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEE
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEE
Confidence 347788999877664 899999999999999999999999999987543
No 53
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=96.10 E-value=0.02 Score=34.94 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=35.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcCC
Q psy1898 154 KPRVATPDVEKRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGGR 211 (230)
Q Consensus 154 rpr~lt~~~~~~I~~l~~~~P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~g 211 (230)
||..++++....|..+..+ ..+..+|++.| | +|.+||++++++..
T Consensus 2 R~~~l~~~~~~~i~~~~~~--g~s~~~IA~~l----g-------is~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 2 RGSALSDTERAQLDVMKLL--NVSLHEMSRKI----S-------RSRHCIRVYLKDPV 46 (51)
T ss_dssp CSCCCCHHHHHHHHHHHHT--TCCHHHHHHHH----T-------CCHHHHHHHHHCST
T ss_pred CCCCCCHHHHHHHHHHHHc--CCCHHHHHHHH----C-------cCHHHHHHHHhhHH
Confidence 6778888888788777644 47888888755 4 49999999998753
No 54
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.07 E-value=0.0024 Score=48.42 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=40.1
Q ss_pred HHHHHHHHHHH-c-CCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC
Q psy1898 103 HIRLKIVEMAA-A-GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 148 (230)
Q Consensus 103 ~~R~rIV~l~~-~-G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~ 148 (230)
..|.+|+.++. . +.+..+||+.+++|++||++.++...+.|.+...
T Consensus 42 ~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 42 ENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp HHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 67888998776 4 4899999999999999999999999999987543
No 55
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=96.05 E-value=0.014 Score=46.24 Aligned_cols=46 Identities=22% Similarity=0.146 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcCCCC
Q psy1898 162 VEKRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGGRRD 213 (230)
Q Consensus 162 ~~~~I~~l~~~~P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~g~~ 213 (230)
-.+.|.+++.+++..+..|+.+.|.+ .|+. ||.+||+|.|+++++.
T Consensus 6 R~~~I~~li~~~~~~tq~eL~~~L~~-~G~~-----VtqaTisRDL~eL~~v 51 (149)
T 1b4a_A 6 RHIKIREIIMSNDIETQDELVDRLRE-AGFN-----VTQATVSRDIKEMQLV 51 (149)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHH-TTCC-----CCHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHCCCccHHHHHHHHHH-cCCC-----cCHHHHHHHHHHcCCe
Confidence 45688999999999999999999988 8995 9999999999999875
No 56
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=96.00 E-value=0.0061 Score=46.66 Aligned_cols=71 Identities=10% Similarity=0.044 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHhcCCChhhhhhhhcccccccccCCcccCCCcC-CHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHH
Q psy1898 58 NHIRLKIVEMAAAGVRPCVISRQLRVSHGVNQLGGVFINGRPL-PNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 58 ~~~r~~I~e~~~~g~~~~~isr~lrvshg~~~l~~~~~~g~~~-s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwi 136 (230)
....-++.+..+.=....++.+-|.-- | +...+ ....|.+|+.++.+|+|.++||+.+|+|..||.|..
T Consensus 27 ~~~~d~L~~AIl~l~~~ee~~~fl~dL--~--------T~~E~~aLs~R~eV~klL~~G~syreIA~~~g~S~aTIsRv~ 96 (119)
T 3kor_A 27 GAALDELFDAILTLENREECYQFFDDL--C--------TVNEIQSLSQRLQVAKMIKQGYTYATIEQESGASTATISRVK 96 (119)
T ss_dssp SHHHHHHHHHHHTCCSHHHHHHHHHHH--S--------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHCCCHHHHHHHH
T ss_pred cccHHHHHHHHHHhCCHHHHHHHHHHh--C--------CchHHHHHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHH
Confidence 555566666665555666655444200 0 11122 446789999999999999999999999999999975
Q ss_pred HH
Q psy1898 137 NR 138 (230)
Q Consensus 137 kR 138 (230)
+-
T Consensus 97 r~ 98 (119)
T 3kor_A 97 RS 98 (119)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 57
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=95.96 E-value=0.0012 Score=54.00 Aligned_cols=42 Identities=12% Similarity=0.014 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhh
Q psy1898 100 LPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQE 141 (230)
Q Consensus 100 ~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e 141 (230)
++.+...+|..++.+|.|..+||+.|+||++|||+|++.+.+
T Consensus 143 ~~~~~v~~i~~l~~~G~s~~~Ia~~l~vs~~T~yr~l~~~~~ 184 (193)
T 3plo_X 143 LTKAEWEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPAKRA 184 (193)
T ss_dssp ------------------------------------------
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHhhhHH
Confidence 344556678889999999999999999999999999987654
No 58
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=95.95 E-value=0.0039 Score=44.96 Aligned_cols=45 Identities=22% Similarity=0.180 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhhhCCCCc
Q psy1898 103 HIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 147 (230)
Q Consensus 103 ~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p 147 (230)
..|.+|+.++....+..+||+.++||++||++.++...+.|.+..
T Consensus 31 ~~r~~Il~~L~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~ 75 (96)
T 1y0u_A 31 PVRRKILRMLDKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIER 75 (96)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 678889887744599999999999999999999999999998753
No 59
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=95.89 E-value=0.0072 Score=43.08 Aligned_cols=46 Identities=13% Similarity=0.263 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHH-cC----CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 101 PNHIRLKIVEMAA-AG----VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 101 s~~~R~rIV~l~~-~G----~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
+.+...+|+.++. .+ .+..+||+.||||++||.+.+.+.++.|.+.
T Consensus 8 ~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~ 58 (81)
T 1qbj_A 8 YQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ 58 (81)
T ss_dssp HHHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred chHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3466777887664 34 7999999999999999999999999999874
No 60
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=95.88 E-value=0.0096 Score=49.24 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=39.0
Q ss_pred CCCcCCH-HHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHh-hhC
Q psy1898 96 NGRPLPN-HIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQ-ETG 143 (230)
Q Consensus 96 ~g~~~s~-~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~-e~G 143 (230)
+.+++|. +.-.++..++..|++..+||+.+|||+.||++|++..+ +.|
T Consensus 4 Take~sl~eiG~ria~~y~~g~tQ~eIA~~lGiSr~~VSR~L~~A~~~~~ 53 (192)
T 1zx4_A 4 TALQHSIREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQAASAPEE 53 (192)
T ss_dssp -CCSSCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHTSCHH
T ss_pred ccccccHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHhccchh
Confidence 4566665 45567777888999999999999999999999999887 444
No 61
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=95.84 E-value=0.0081 Score=46.07 Aligned_cols=41 Identities=10% Similarity=0.097 Sum_probs=34.9
Q ss_pred cCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 99 PLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 99 ~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
.+|...|.-++ ++.+|+|..+||+.+|||.+||.+++.|.+
T Consensus 109 ~L~~~~r~v~~-~~~~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp HSCHHHHHHHH-HHTTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35667777666 788999999999999999999999988754
No 62
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=95.76 E-value=0.013 Score=42.40 Aligned_cols=41 Identities=15% Similarity=0.295 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhh
Q psy1898 100 LPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQE 141 (230)
Q Consensus 100 ~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e 141 (230)
++...| .|+.++.+|++.++||+.++||.+||..++.+-.+
T Consensus 28 Lt~~e~-~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 28 LTDQER-TLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLA 68 (95)
T ss_dssp CCHHHH-HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 555555 55555689999999999999999999999988653
No 63
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=95.74 E-value=0.0078 Score=43.07 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhh
Q psy1898 100 LPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQE 141 (230)
Q Consensus 100 ~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e 141 (230)
++...| .|+.++.+|++..+||..++||.+||..++.+-.+
T Consensus 30 Lt~~e~-~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 30 LTEREM-EILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp CCSHHH-HHHHHHHTTCCTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 454555 45556789999999999999999999999988654
No 64
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=95.70 E-value=0.0058 Score=43.00 Aligned_cols=46 Identities=13% Similarity=0.263 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHH-cC----CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 101 PNHIRLKIVEMAA-AG----VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 101 s~~~R~rIV~l~~-~G----~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
+.+...+|+.++. .+ .+..+||+.|+|+++||.+.+.+..+.|.+.
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~ 62 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ 62 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEE
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3456677777554 34 7999999999999999999999999999874
No 65
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=95.70 E-value=0.011 Score=40.67 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhh
Q psy1898 101 PNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQE 141 (230)
Q Consensus 101 s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e 141 (230)
|...+ .|+.++.+|++..+||..+++|.+||+.++.+-.+
T Consensus 18 ~~~e~-~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 18 SERER-QVLSAVVAGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp CHHHH-HHHHHHTTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 43444 55566788999999999999999999999987654
No 66
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=95.64 E-value=0.0031 Score=46.01 Aligned_cols=67 Identities=19% Similarity=0.189 Sum_probs=45.8
Q ss_pred HHHHHHHH-HHHHc-CCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHH
Q psy1898 102 NHIRLKIV-EMAAA-GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEY 169 (230)
Q Consensus 102 ~~~R~rIV-~l~~~-G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l 169 (230)
...|.+|+ .+... +.+.++||+.+++|++||++-++...+. .+...+.+...--.++++..+.+...
T Consensus 26 ~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~~~~~~~~ 94 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPKVEGIIKL 94 (99)
T ss_dssp SHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHHHHHHHHH
Confidence 47788998 45444 5999999999999999999999999988 66433332222233444444444433
No 67
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=95.61 E-value=0.011 Score=39.60 Aligned_cols=37 Identities=5% Similarity=0.009 Sum_probs=29.9
Q ss_pred HHHHHHHHHH-cCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 104 IRLKIVEMAA-AGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 104 ~R~rIV~l~~-~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
.+.-|..++. .+....++|+.||||++|+++++++|.
T Consensus 20 E~~~i~~aL~~~~gn~~~aA~~LGisr~tL~rklkk~g 57 (63)
T 3e7l_A 20 EKIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKIKSLN 57 (63)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHHHhC
Confidence 4455555554 467899999999999999999999985
No 68
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=95.60 E-value=0.014 Score=39.03 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 100 LPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 100 ~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
+....|.-|..+++...+..++|+.||||++|+++++++|.
T Consensus 18 l~~~Er~~I~~aL~~~gn~~~aA~~LGIsr~tL~rklkk~g 58 (61)
T 1g2h_A 18 IGFYEAQVLKLFYAEYPSTRKLAQRLGVSHTAIANKLKQYG 58 (61)
T ss_dssp CSHHHHHHHHHHHHHSCSHHHHHHHTTSCTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 44456666666665446889999999999999999999874
No 69
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=95.55 E-value=0.027 Score=41.75 Aligned_cols=68 Identities=12% Similarity=0.002 Sum_probs=47.1
Q ss_pred CCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHH-hCCCCCHHHHHHHHH
Q psy1898 115 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKK-TNPGIFSWEIRDRLV 186 (230)
Q Consensus 115 G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~-~~P~~t~~eI~~~L~ 186 (230)
+++..++|+.+|||..|+..|.+ .|.+.|..+..+.-+..+.++...+..... .+-.++..+|++.+.
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~----~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~ 69 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDD----IGLLVPSERSHAGHRRYSDADLDRLQQILFYRELGFPLDEVAALLD 69 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHH----HTSSCCSEECSSCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHH----CCCCCCCccCCCCCeecCHHHHHHHHHHHHHHHCCCCHHHHHHHHh
Confidence 36889999999999999998865 487766442222356678877665543332 334688888888774
No 70
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=95.48 E-value=0.016 Score=46.66 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=29.9
Q ss_pred HHHHHHHHcCCCHHHHhhhhccccchhhhHHHH
Q psy1898 106 LKIVEMAAAGVRPCVISRQLRVSHGCVSKILNR 138 (230)
Q Consensus 106 ~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikR 138 (230)
..|.+++.+|.|..+||+.|+||++||++|++.
T Consensus 149 ~~i~~~~~~G~s~~~Ia~~l~is~~tv~r~l~~ 181 (183)
T 1gdt_A 149 DAVLNMWQQGLGASHISKTMNIARSTVYKVINE 181 (183)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred HHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 367888899999999999999999999999864
No 71
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=95.43 E-value=0.048 Score=41.47 Aligned_cols=100 Identities=17% Similarity=0.087 Sum_probs=57.8
Q ss_pred CcCCHHHHHHHHHHHHcC-------C-CHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHH
Q psy1898 98 RPLPNHIRLKIVEMAAAG-------V-RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEY 169 (230)
Q Consensus 98 ~~~s~~~R~rIV~l~~~G-------~-s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l 169 (230)
.++...+-..+......| + |.+++|+.|+||++||.+-+++..+.|.+...+..| ..+ .+...+.+.+.
T Consensus 10 ~~~~~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~~G--~~V-~~~~~~~~~~~ 86 (126)
T 3ic7_A 10 RAIYLQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRGIG--FFV-ASGAKMLIHSL 86 (126)
T ss_dssp --CTTHHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETTTE--EEE-CTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEcCCc--cEE-ccCcHHHHHHH
Confidence 344445555555555544 2 788999999999999999999999999886554322 222 22223333333
Q ss_pred HHhC-CCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHH
Q psy1898 170 KKTN-PGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLR 208 (230)
Q Consensus 170 ~~~~-P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr 208 (230)
.... -..........+.. .|+ +...+...+.
T Consensus 87 ~~~~~~~~~le~~~~~~~~-~~~-------~~~~l~~l~~ 118 (126)
T 3ic7_A 87 RKEQFLKEEVGSFFRQLYT-LGI-------SIKEIEKMYY 118 (126)
T ss_dssp HHTTCCCCCSHHHHHHHHH-TTC-------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-cCC-------CHHHHHHHHH
Confidence 3222 22334445555544 454 6666666554
No 72
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=95.42 E-value=0.018 Score=41.48 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 99 PLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 99 ~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
.++...+ .|+.++.+|++.++||+.|+||..||...+.+-.
T Consensus 29 ~Lt~rE~-~Vl~l~~~G~s~~eIA~~L~iS~~TV~~~~~~i~ 69 (90)
T 3ulq_B 29 VLTPREC-LILQEVEKGFTNQEIADALHLSKRSIEYSLTSIF 69 (90)
T ss_dssp CCCHHHH-HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3554444 5677777999999999999999999999988754
No 73
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=95.41 E-value=0.015 Score=46.15 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhh
Q psy1898 100 LPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQE 141 (230)
Q Consensus 100 ~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e 141 (230)
+|...|.-++..+.+|+|..+||+.+|||.+||.+++.|.+.
T Consensus 141 L~~~~r~vl~l~~~~g~s~~EIA~~lgis~~tV~~~l~ra~~ 182 (194)
T 1or7_A 141 LPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 182 (194)
T ss_dssp SCHHHHHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566666666566778999999999999999999999988653
No 74
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.34 E-value=0.0053 Score=46.63 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHc-CCCHHHHhhhhccccchhhhHHHHHhhhCCCCc
Q psy1898 103 HIRLKIVEMAAA-GVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 147 (230)
Q Consensus 103 ~~R~rIV~l~~~-G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p 147 (230)
..|.+|+.++.+ ..+..+||+.+++|++||++-++...+.|.+..
T Consensus 46 ~~rl~IL~~L~~~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~ 91 (122)
T 1r1t_A 46 PNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSY 91 (122)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 678888887766 489999999999999999999999999997753
No 75
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=95.28 E-value=0.074 Score=41.03 Aligned_cols=68 Identities=9% Similarity=0.049 Sum_probs=47.3
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKK-TNPGIFSWEIRDRLVK 187 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~-~~P~~t~~eI~~~L~~ 187 (230)
++..++|+.+|||..|+..|.+ .|.+.|..+..+.-+..+.++...|..... .+-.+++.+|++.|..
T Consensus 1 ~~I~e~A~~~gvs~~tLR~ye~----~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~ 69 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFYEE----KGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNLEESGELVNL 69 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH----TTCSCCCEECTTSCEECCHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHH----CCCCCCCccCCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 4788999999999999988754 577765433222356678877665543321 3347899999988864
No 76
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=95.24 E-value=0.026 Score=41.90 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=32.5
Q ss_pred HHHHHHHH-HHcCCCHHHHhhhhccccchhhhHHHHHhhh
Q psy1898 104 IRLKIVEM-AAAGVRPCVISRQLRVSHGCVSKILNRYQET 142 (230)
Q Consensus 104 ~R~rIV~l-~~~G~s~~~IAr~lgVS~sTV~kwikRy~e~ 142 (230)
.-.+|..+ +.+|++..+||+.||||+.||++.+++.++.
T Consensus 22 ~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~ 61 (101)
T 2w7n_A 22 QTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAA 61 (101)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33555554 5689999999999999999999999998765
No 77
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=95.20 E-value=0.012 Score=46.42 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhh
Q psy1898 100 LPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQE 141 (230)
Q Consensus 100 ~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e 141 (230)
+|...|.-++..+.+|+|..+||+.+|||.+||.+++.|.+.
T Consensus 136 L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~ 177 (184)
T 2q1z_A 136 LPEAQRALIERAFFGDLTHRELAAETGLPLGTIKSRIRLALD 177 (184)
T ss_dssp SCHHHHHHHHHHHHSCCSSCCSTTTCCCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 566777666666789999999999999999999999988653
No 78
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=95.14 E-value=0.027 Score=38.24 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=31.2
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKT 172 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~~ 172 (230)
++..+||+.+|||++||+++++ |.. ....++++.+++|.+..++
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLn-----g~~--------~~~~vs~et~~rI~~aa~~ 44 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVIN-----GKA--------KQYRVSDKTVEKVMAVVRE 44 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH-----TCT--------TTTTCTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHc-----CCC--------CCCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999986 110 0013467777777776543
No 79
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=95.12 E-value=0.04 Score=38.62 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=46.2
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHH-h-CCCCCHHHHHHHHHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKK-T-NPGIFSWEIRDRLVK 187 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~-~-~P~~t~~eI~~~L~~ 187 (230)
++..++|+.+|||..|+..|.+. .|.+.|.....+.-+..+.++...|..... . +-..++.+|++.|..
T Consensus 6 ~~i~e~A~~~gvs~~tlR~ye~~---~gl~~p~r~~~~g~R~Y~~~dl~~l~~I~~l~~~~G~sl~ei~~~l~~ 76 (81)
T 2jml_A 6 LRIRTIARMTGIREATLRAWERR---YGFPRPLRSEGNNYRVYSREEVEAVRRVARLIQEEGLSVSEAIAQVKT 76 (81)
T ss_dssp EEHHHHHHTTSTTHHHHHHHHHH---TCCSCCBSSSCSSSCEECHHHHHHHHHHHHHHHHTSTHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHh---CCCCCCcCCCCCCeeecCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHc
Confidence 57899999999999999988654 355555432202356677877665543321 2 446788888888765
No 80
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=95.12 E-value=0.018 Score=41.51 Aligned_cols=37 Identities=11% Similarity=-0.005 Sum_probs=30.0
Q ss_pred HHHHHHHHHH-cCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 104 IRLKIVEMAA-AGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 104 ~R~rIV~l~~-~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
.|.-|..+++ .+.+..++|+.||||++|+++++++|.
T Consensus 52 E~~~i~~aL~~~~gn~~~aA~~LGIsr~tL~rklkk~~ 89 (91)
T 1ntc_A 52 ERTLLTTALRHTQGHKQEAARLLGWGAATLTAKLKELG 89 (91)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHHHhC
Confidence 4555555554 467889999999999999999999985
No 81
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=95.04 E-value=0.015 Score=41.44 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=30.3
Q ss_pred HHHHHHHHHHH-cCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 103 HIRLKIVEMAA-AGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 103 ~~R~rIV~l~~-~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
.++..|..+++ .+....++|+.||||++|+++++++|.
T Consensus 41 ~Er~~I~~aL~~~~GN~s~AA~~LGISR~TLyrKLkk~g 79 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRLNMHRRTLQRILAKRS 79 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 34555556554 467899999999999999999999874
No 82
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=95.02 E-value=0.086 Score=39.94 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=39.5
Q ss_pred cCCHHHHHHHHHHHHcC-------C-CHHHHhhhhccccchhhhHHHHHhhhCCCCcCCC
Q psy1898 99 PLPNHIRLKIVEMAAAG-------V-RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI 150 (230)
Q Consensus 99 ~~s~~~R~rIV~l~~~G-------~-s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~ 150 (230)
++..++...|......| + |..++|++|+||+.||.+-+++..+.|.+...+.
T Consensus 13 ~~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g 72 (125)
T 3neu_A 13 PIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG 72 (125)
T ss_dssp CHHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecC
Confidence 34445555555555544 2 6899999999999999999999999998865443
No 83
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=95.00 E-value=0.017 Score=41.10 Aligned_cols=69 Identities=13% Similarity=0.084 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHH--cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCC---CCCCCCCCCCHHHHHHHHHHH
Q psy1898 102 NHIRLKIVEMAA--AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV---IGGSKPRVATPDVEKRIEEYK 170 (230)
Q Consensus 102 ~~~R~rIV~l~~--~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~---~gg~rpr~lt~~~~~~I~~l~ 170 (230)
...|.+|+..+. .+.+..+||+.+++|++||++.+++..+.|-+.... .+....-.+++.-.+.+..+.
T Consensus 15 ~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~~ 88 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFL 88 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHHH
Confidence 366788887553 459999999999999999999999999999774211 111122345666554444433
No 84
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=94.97 E-value=0.017 Score=42.18 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHH-cCCCHHHHhhhhccccchhhhHHH
Q psy1898 102 NHIRLKIVEMAA-AGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 102 ~~~R~rIV~l~~-~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
.+.+.+|++++. .+.+..+||+.+|||.+||+++++
T Consensus 6 ~~R~~~I~~~l~~~~~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 6 KERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHc
Confidence 355566776554 579999999999999999999985
No 85
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=94.95 E-value=0.0068 Score=41.21 Aligned_cols=23 Identities=9% Similarity=0.049 Sum_probs=20.4
Q ss_pred CCHHHHhhhhccccchhhhHHHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNR 138 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikR 138 (230)
++..++|+.||||++|+++|++.
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 36789999999999999999864
No 86
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=94.93 E-value=0.017 Score=47.45 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=29.9
Q ss_pred HHHHHHHHcCCCHHHHhhhhccccchhhhHHHH
Q psy1898 106 LKIVEMAAAGVRPCVISRQLRVSHGCVSKILNR 138 (230)
Q Consensus 106 ~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikR 138 (230)
.+|.+++.+|.|..+||+.||||++||++|++.
T Consensus 166 ~~i~~~~~~G~s~~~Ia~~l~is~~tv~r~l~~ 198 (209)
T 2r0q_C 166 HRVVEMLEEGQAISKIAKEVNITRQTVYRIKHD 198 (209)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhc
Confidence 467778889999999999999999999999874
No 87
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=94.81 E-value=0.029 Score=45.68 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=35.4
Q ss_pred cCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 99 PLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 99 ~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
.+|...|.-++..+.+|+|..+||+.+|||.+||.+++.+..
T Consensus 187 ~L~~~~r~vl~l~~~~g~s~~EIA~~lgis~~~V~~~~~ra~ 228 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAKAL 228 (239)
T ss_dssp TSCHHHHHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 367777766666678899999999999999999999998754
No 88
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=94.80 E-value=0.027 Score=39.24 Aligned_cols=44 Identities=25% Similarity=0.440 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHc----CCCHHHHhhhh-----ccccchhhhHHHHHhhhCCCC
Q psy1898 103 HIRLKIVEMAAA----GVRPCVISRQL-----RVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 103 ~~R~rIV~l~~~----G~s~~~IAr~l-----gVS~sTV~kwikRy~e~G~v~ 146 (230)
..|..|++++.+ ..+..+|++.+ +||.+|||+.++.+.+.|.+.
T Consensus 17 ~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 677888887743 48999999999 999999999999999999874
No 89
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=94.78 E-value=0.016 Score=43.07 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHc-CCCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 103 HIRLKIVEMAAA-GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 103 ~~R~rIV~l~~~-G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
..+.+|+.++.+ ..+..+||+.++++++||++.+++..+.|.+.
T Consensus 32 ~~~~~il~~L~~~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~ 76 (119)
T 2lkp_A 32 PSRLMILTQLRNGPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVV 76 (119)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 557778876665 69999999999999999999999999999774
No 90
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=94.77 E-value=0.094 Score=40.90 Aligned_cols=68 Identities=18% Similarity=0.029 Sum_probs=48.4
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKK-TNPGIFSWEIRDRLVK 187 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~-~~P~~t~~eI~~~L~~ 187 (230)
++..++|+.+|||+.|+.-|.+ .|.+.|..+..+.-+..++++...|..... ..-..++.+|++.|..
T Consensus 3 ~~I~e~A~~~gvs~~tLR~Ye~----~GLl~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 3 LNIKEASEKSGVSADTIRYYER----IGLIPPIHRNESGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLAL 71 (142)
T ss_dssp BCHHHHHHHHTSCHHHHHHHHH----HTSSCCCCBCTTSCBCBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CcHHHHHHHHCcCHHHHHHHHH----CCCCCCCcCCCCCCeeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5789999999999999987754 488877444333457778877665543322 3457899999888754
No 91
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=94.70 E-value=0.03 Score=40.08 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHH--cCCCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 101 PNHIRLKIVEMAA--AGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 101 s~~~R~rIV~l~~--~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
+...+..++.++. .+.+..+||+.+++|++||++.++...+.|.+.
T Consensus 20 ~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~ 67 (109)
T 2d1h_A 20 TDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVV 67 (109)
T ss_dssp CHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 3344444445554 359999999999999999999999999999773
No 92
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=94.69 E-value=0.067 Score=39.57 Aligned_cols=67 Identities=15% Similarity=0.084 Sum_probs=46.4
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHH-hCCCCCHHHHHHHHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKK-TNPGIFSWEIRDRLV 186 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~-~~P~~t~~eI~~~L~ 186 (230)
++..++|+.+|||+.|+..|.+ .|.+.|..+..+..+..++++...+..... .+-..+..+|++.+.
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~----~Gll~p~~~~~~g~R~Y~~~dl~~l~~I~~l~~~G~~l~~I~~~l~ 70 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDN----IELLNPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEIKEMLD 70 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHH----TTSSCCSEECTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHH----CCCCCCCeECCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHh
Confidence 5789999999999999998854 587766442222356678887666543332 233678888888775
No 93
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=94.46 E-value=0.025 Score=39.87 Aligned_cols=45 Identities=22% Similarity=0.277 Sum_probs=36.2
Q ss_pred HHHHHHHHHHH-c-----C--CCHHHHhhhhccccchhhhHHHHHhhhCCCCc
Q psy1898 103 HIRLKIVEMAA-A-----G--VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 147 (230)
Q Consensus 103 ~~R~rIV~l~~-~-----G--~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p 147 (230)
+...+|++.++ . | .|..+||+.||||..||.+-++...+.|.+..
T Consensus 4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R 56 (77)
T 2jt1_A 4 SIVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEK 56 (77)
T ss_dssp THHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 44566666543 2 3 67999999999999999999999999998743
No 94
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=94.41 E-value=0.029 Score=41.16 Aligned_cols=46 Identities=22% Similarity=0.254 Sum_probs=38.5
Q ss_pred HHHHHHHHHH-HcC--CCHHHHhhhhccccchhhhHHHHHhhhCCCCcC
Q psy1898 103 HIRLKIVEMA-AAG--VRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 148 (230)
Q Consensus 103 ~~R~rIV~l~-~~G--~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~ 148 (230)
+.+.+|+... ..| .+..+||+.||||++||++-+++..+.|.+...
T Consensus 18 ~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 18 DDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp STTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3567788755 444 899999999999999999999999999987543
No 95
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=94.36 E-value=0.033 Score=38.02 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=32.0
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKT 172 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~~ 172 (230)
.+..+||+..|||++||++|++ + ++ .++++.++.|.+..++
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln--------------~-~~-~vs~~t~~rV~~~a~~ 50 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALM--------------N-PD-KVSQATRNRVEKAARE 50 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTT--------------C-CC-CSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHc--------------C-CC-CCCHHHHHHHHHHHHH
Confidence 6899999999999999999973 1 12 2578888888777654
No 96
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=94.31 E-value=0.055 Score=41.96 Aligned_cols=44 Identities=20% Similarity=0.365 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHc-C-CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 103 HIRLKIVEMAAA-G-VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 103 ~~R~rIV~l~~~-G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
+...+|+.++.. + .+.++||+.+|+|++||++.+++..+.|.+.
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 455678876653 4 9999999999999999999999999999763
No 97
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=94.29 E-value=0.047 Score=40.19 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHH----cCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 100 LPNHIRLKIVEMAA----AGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 100 ~s~~~R~rIV~l~~----~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
+|...|.-+...+- +++|..+||..+|||..||..+..+..
T Consensus 20 Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAl 64 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKAL 64 (99)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 55566655554443 689999999999999999999987643
No 98
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=94.26 E-value=0.11 Score=35.50 Aligned_cols=25 Identities=12% Similarity=0.320 Sum_probs=22.9
Q ss_pred HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
+.|+|..++|+.+|||++||++|.+
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 4599999999999999999999974
No 99
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=94.20 E-value=0.013 Score=45.72 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=36.1
Q ss_pred cCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhh
Q psy1898 99 PLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQE 141 (230)
Q Consensus 99 ~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e 141 (230)
.+|...|.-++..+.+|+|..+||+.+|||.+||...+.|-+.
T Consensus 93 ~Lp~~~r~vl~L~~~~g~s~~EIA~~lgis~~tV~~~l~rar~ 135 (157)
T 2lfw_A 93 RMTPLSRQALLLTAMEGFSPEDAAYLIEVDTSEVETLVTEALA 135 (157)
T ss_dssp TSCTTHHHHHTTTSSSCCCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3677777666666788999999999999999999999988653
No 100
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=94.11 E-value=0.11 Score=45.03 Aligned_cols=79 Identities=14% Similarity=0.086 Sum_probs=53.8
Q ss_pred ChhHHHHHHHHHhcCCChhhhhhhhc-------cccccc------------ccCCcccCCCc--CCHHHHHHHHHHHHc-
Q psy1898 57 PNHIRLKIVEMAAAGVRPCVISRQLR-------VSHGVN------------QLGGVFINGRP--LPNHIRLKIVEMAAA- 114 (230)
Q Consensus 57 p~~~r~~I~e~~~~g~~~~~isr~lr-------vshg~~------------~l~~~~~~g~~--~s~~~R~rIV~l~~~- 114 (230)
..+.|..|+.++.+|.+..++++.+. ++..++ .+...-..|++ ++. ..+..++..
T Consensus 8 ~~~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~~g~~~l~~~~r~grp~~~~~---~~i~~~v~~~ 84 (345)
T 3hot_A 8 KEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYED---AELQALLDED 84 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTTCCCCCSCCCCCCCCCSSCH---HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhCCCccccCCCCCCCCCcccH---HHHHHHHHhC
Confidence 35678889999999999999999887 654333 11111112223 333 233333333
Q ss_pred -CCCHHHHhhhhccccchhhhHHHH
Q psy1898 115 -GVRPCVISRQLRVSHGCVSKILNR 138 (230)
Q Consensus 115 -G~s~~~IAr~lgVS~sTV~kwikR 138 (230)
..+..+||+.|+||.+||++++++
T Consensus 85 ~~~t~~~ia~~l~vs~~tV~r~L~~ 109 (345)
T 3hot_A 85 DAQTQKQLAEQLEVSQQAVSNRLRE 109 (345)
T ss_dssp SCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccchHHHHHHHHCCCHHHHHHHHHH
Confidence 499999999999999999999987
No 101
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=94.07 E-value=0.054 Score=41.76 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHc-C-CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 103 HIRLKIVEMAAA-G-VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 103 ~~R~rIV~l~~~-G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
+.+.+|+.++.. + .+.++||+.+|+|++||++.+++..+.|.+.
T Consensus 3 ~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 48 (150)
T 2pn6_A 3 EIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIK 48 (150)
T ss_dssp HHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 456788887754 3 8999999999999999999999999999763
No 102
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=94.06 E-value=0.015 Score=38.68 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=22.5
Q ss_pred HHHcCCCHHHHhhhhccccchhhhHH
Q psy1898 111 MAAAGVRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 111 l~~~G~s~~~IAr~lgVS~sTV~kwi 136 (230)
+.+.+.+..++|+.+|||++||++|.
T Consensus 6 ~i~~~~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 6 VIDHFGTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHSSHHHHHHHHTCCHHHHHHCC
T ss_pred HHHHcCCHHHHHHHhCCCHHHHHHHH
Confidence 44555699999999999999999995
No 103
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=94.06 E-value=0.055 Score=41.95 Aligned_cols=43 Identities=16% Similarity=0.259 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHc-C-CCHHHHhhhhccccchhhhHHHHHhhhCCC
Q psy1898 103 HIRLKIVEMAAA-G-VRPCVISRQLRVSHGCVSKILNRYQETGSI 145 (230)
Q Consensus 103 ~~R~rIV~l~~~-G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v 145 (230)
+...+|+.++.. + .+..+||+.+|+|++||++.+++..+.|.+
T Consensus 8 ~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i 52 (152)
T 2cg4_A 8 NLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGII 52 (152)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCc
Confidence 445678876654 3 999999999999999999999999999966
No 104
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=94.05 E-value=0.022 Score=39.58 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=19.8
Q ss_pred CHHHHhhhhccccchhhhHHH
Q psy1898 117 RPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 117 s~~~IAr~lgVS~sTV~kwik 137 (230)
+..++|+.||||++||++|++
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~ 32 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQ 32 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHh
Confidence 589999999999999999986
No 105
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=93.98 E-value=0.061 Score=41.60 Aligned_cols=43 Identities=9% Similarity=0.308 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHc-C-CCHHHHhhhhccccchhhhHHHHHhhhCCC
Q psy1898 103 HIRLKIVEMAAA-G-VRPCVISRQLRVSHGCVSKILNRYQETGSI 145 (230)
Q Consensus 103 ~~R~rIV~l~~~-G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v 145 (230)
+...+|+.++.. + .|..+||+.+|+|++||++.+++..+.|.+
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i 53 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGII 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 445577776654 3 999999999999999999999999999976
No 106
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=93.97 E-value=0.058 Score=42.33 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHc-C-CCHHHHhhhhccccchhhhHHHHHhhhCCC
Q psy1898 103 HIRLKIVEMAAA-G-VRPCVISRQLRVSHGCVSKILNRYQETGSI 145 (230)
Q Consensus 103 ~~R~rIV~l~~~-G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v 145 (230)
+...+|+.++.. + .+.++||+.+|+|++||++.+++..+.|.+
T Consensus 10 ~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i 54 (162)
T 2p5v_A 10 KTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIV 54 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 455677776653 3 999999999999999999999999999966
No 107
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=93.92 E-value=0.062 Score=41.38 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHc-C-CCHHHHhhhhccccchhhhHHHHHhhhCCC
Q psy1898 103 HIRLKIVEMAAA-G-VRPCVISRQLRVSHGCVSKILNRYQETGSI 145 (230)
Q Consensus 103 ~~R~rIV~l~~~-G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v 145 (230)
+...+|+.++.. + .+..+||+.+|+|++||++.+++..+.|.+
T Consensus 5 ~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i 49 (144)
T 2cfx_A 5 QIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGII 49 (144)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCe
Confidence 345577776653 3 999999999999999999999999999966
No 108
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=93.89 E-value=0.15 Score=41.62 Aligned_cols=49 Identities=18% Similarity=0.110 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCCCC-CHhHHHHHHHcCCCC
Q psy1898 159 TPDVEKRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAP-SVSSISRLLRGGRRD 213 (230)
Q Consensus 159 t~~~~~~I~~l~~~~P~~t~~eI~~~L~~~~Gi~~~~~~v-S~sTV~R~Lr~~g~~ 213 (230)
.....+.|++++.+++-.|..|+.+.|++ .|+. + +.+||+|-|++.|+.
T Consensus 31 ~~~r~~~I~eiI~~~~I~TQeEL~~~L~~-~Gi~-----viTQATvSRDIkELglv 80 (180)
T 3v4g_A 31 QDNLVRAFKALLKEERFGSQGEIVEALKQ-EGFE-----NINQSKVSRMLTKFGAV 80 (180)
T ss_dssp HHHHHHHHHHHHHHTCCCSHHHHHHHHHH-TTCT-----TCCHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHhhCCcCCHHHHHHHHHH-CCCc-----ccCHHHHHHHHHHcCCE
Confidence 34567789999999999999999999988 8996 6 999999999999975
No 109
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=93.82 E-value=0.044 Score=42.64 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHH-HhCCCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC
Q psy1898 154 KPRVATPDVEKRIEEYK-KTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGG 210 (230)
Q Consensus 154 rpr~lt~~~~~~I~~l~-~~~P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~ 210 (230)
....+|.++...|..+. +++|.++..++++|...+++.. ||.+||+++|+..
T Consensus 8 ~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~-----is~stis~ilk~k 60 (144)
T 1iuf_A 8 KRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKD-----ISQPSVSQILSSK 60 (144)
T ss_dssp SSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSC-----CSSSSTTHHHHHH
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCC-----CcHHHHHHHHhhH
Confidence 34567888888888888 7899999999999999888653 6999999999875
No 110
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=93.79 E-value=0.1 Score=42.25 Aligned_cols=47 Identities=19% Similarity=0.081 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcCCCC
Q psy1898 161 DVEKRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGGRRD 213 (230)
Q Consensus 161 ~~~~~I~~l~~~~P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~g~~ 213 (230)
+-.+.|++++.+++--|..||.+.|.+ .|+. |+.+||+|-|++.|+.
T Consensus 20 ~R~~~I~~iI~~~~I~tQeEL~~~L~~-~Gi~-----vTQATlSRDikEL~lv 66 (170)
T 3lap_A 20 GRQARIVAILSSAQVRSQNELAALLAA-EGIE-----VTQATLSRDLEELGAV 66 (170)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHH-TTCC-----CCHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHH-cCCC-----cCchhHHHHHHHcCcE
Confidence 346688999999999999999999988 8995 8999999999999975
No 111
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=93.76 E-value=0.059 Score=37.97 Aligned_cols=41 Identities=17% Similarity=0.391 Sum_probs=35.3
Q ss_pred HHHHHHHH-cC-CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 106 LKIVEMAA-AG-VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 106 ~rIV~l~~-~G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
.+|++++. .| .+..++|++|+||..||.+-+....+.|.+.
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 35666665 45 9999999999999999999999999999774
No 112
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=93.75 E-value=0.078 Score=42.42 Aligned_cols=44 Identities=20% Similarity=0.365 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHc-C-CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 103 HIRLKIVEMAAA-G-VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 103 ~~R~rIV~l~~~-G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
+...+|+.++.. + .+.++||+.+|+|.+||++.+++..+.|.+.
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 455678876653 4 9999999999999999999999999999763
No 113
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=93.70 E-value=0.068 Score=42.14 Aligned_cols=43 Identities=14% Similarity=0.274 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHc-C-CCHHHHhhhhccccchhhhHHHHHhhhCCC
Q psy1898 103 HIRLKIVEMAAA-G-VRPCVISRQLRVSHGCVSKILNRYQETGSI 145 (230)
Q Consensus 103 ~~R~rIV~l~~~-G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v 145 (230)
+...+|+.++.. + .|..+||+.+|+|++||.+-+++..+.|.+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i 47 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVI 47 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCe
Confidence 455678887754 4 999999999999999999999999999965
No 114
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=93.67 E-value=0.015 Score=42.89 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=37.1
Q ss_pred HHHHHHHHHcC--C-CHHHHhhhhccccchhhhHHHHHhhhCCCCcCC
Q psy1898 105 RLKIVEMAAAG--V-RPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 149 (230)
Q Consensus 105 R~rIV~l~~~G--~-s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~ 149 (230)
+..|+..+..| + +..++|+.|+||++||.+-+++..+.|.+...+
T Consensus 30 ~~~I~~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 30 IEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HHHHTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHhhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 66776545445 4 999999999999999999999999999886444
No 115
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=93.66 E-value=0.03 Score=44.58 Aligned_cols=68 Identities=10% Similarity=0.105 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHc---C-CCHHHHhhhhc-cccchhhhHHHHHhhhCCCCc-----CCCCCCCCC---CCCHHHHHHH
Q psy1898 100 LPNHIRLKIVEMAAA---G-VRPCVISRQLR-VSHGCVSKILNRYQETGSIRP-----GVIGGSKPR---VATPDVEKRI 166 (230)
Q Consensus 100 ~s~~~R~rIV~l~~~---G-~s~~~IAr~lg-VS~sTV~kwikRy~e~G~v~p-----~~~gg~rpr---~lt~~~~~~I 166 (230)
+....|..|+..+.. + .+..+|+..++ ||.+|||+-++...+.|.+.. ...++++|. .+|++-++.+
T Consensus 26 l~~~tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l 105 (151)
T 3u1d_A 26 VLHETRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALL 105 (151)
T ss_dssp HCCHHHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred hcchHHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence 344789999987654 3 68999999999 999999999999999997742 112234554 6777776655
Q ss_pred H
Q psy1898 167 E 167 (230)
Q Consensus 167 ~ 167 (230)
.
T Consensus 106 ~ 106 (151)
T 3u1d_A 106 R 106 (151)
T ss_dssp H
T ss_pred H
Confidence 3
No 116
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=93.62 E-value=0.061 Score=39.52 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=29.5
Q ss_pred HHHHHHHHH-HcCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 104 IRLKIVEMA-AAGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 104 ~R~rIV~l~-~~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
.+.-|..++ ..+....++|+.||||++|+++++++|.
T Consensus 59 Er~~I~~aL~~~~gn~~~AA~~LGIsR~TL~rkLkk~g 96 (98)
T 1eto_A 59 EQPLLDMVMQYTLGNQTRAALMMGINRGTLRKKLKKYG 96 (98)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 444455544 4577899999999999999999999984
No 117
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=93.62 E-value=0.18 Score=39.51 Aligned_cols=69 Identities=10% Similarity=-0.032 Sum_probs=49.5
Q ss_pred CCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHH
Q psy1898 115 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKK-TNPGIFSWEIRDRLVK 187 (230)
Q Consensus 115 G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~-~~P~~t~~eI~~~L~~ 187 (230)
-++..++|+.+|||..|+.-|. +.|.+.|..+....-+..+.++...|..... ..-..++.+|++.|..
T Consensus 16 ~~~I~evA~~~gvs~~tLR~Ye----~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~ 85 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIRYYD----KQGLFPFLQRNEKGDRIFNEEALKYLEMILCLKNTGMPIQKIKQFIDW 85 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHH----HTTCCTTCEECTTCCEEBCHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred ceeHHHHHHHHCcCHHHHHHHH----HCCCCCCCcCCCCCCeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4789999999999999988775 4687765433223456778877666654332 4567999999988863
No 118
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=93.40 E-value=0.14 Score=40.09 Aligned_cols=69 Identities=12% Similarity=0.050 Sum_probs=48.1
Q ss_pred CCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHH
Q psy1898 115 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKK-TNPGIFSWEIRDRLVK 187 (230)
Q Consensus 115 G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~-~~P~~t~~eI~~~L~~ 187 (230)
-++..++|+.+|||..|+.-|.+ .|.+.|..+..+.-+..++++...|..... ..-..+..+|++.+..
T Consensus 4 ~~tI~evA~~~Gvs~~tLR~ye~----~GLl~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~~ 73 (146)
T 3hh0_A 4 AWLISEFASVGDVTVRALRYYDK----INLLKPSDYTEGGHRLYTKDDLYVLQQIQSFKHLGFSLGEIQNIILQ 73 (146)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHH----TTSSCCSEECTTSCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHTS
T ss_pred CCcHHHHHHHHCcCHHHHHHHHH----CCCCCCCeECCCCCEeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 47899999999999999987754 588866533223456778887666643332 2346888888887743
No 119
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=93.34 E-value=0.26 Score=37.35 Aligned_cols=92 Identities=18% Similarity=0.064 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhhhCC-CCcCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHH
Q psy1898 103 HIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQETGS-IRPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSWEI 181 (230)
Q Consensus 103 ~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~-v~p~~~gg~rpr~lt~~~~~~I~~l~~~~P~~t~~eI 181 (230)
......+.++.+|++..+||..-+++.+||..-+..+...|. +.-..- -+..++.+..+.|.....+.....+..+
T Consensus 20 ~t~~~t~~l~~~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~~l~i~~~---i~~~l~~~~~~~I~~~~~~~~~~~Lk~i 96 (122)
T 3iuo_A 20 KMKVSIVQQIDRKVALDDIAVSHGLDFPELLSEVETIVYSGTRINIDYF---INEVMDEDHLEDIFEYFKESTTDSLEEA 96 (122)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHTTCCCCCHHH---HHHHSCHHHHHHHHHHHHHCSCCCHHHH
T ss_pred ccHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHH---cccccCHHHHHHHHHHHHHcCcccHHHH
Confidence 567788899999999999999999999999999999999996 321100 1113446777788888877777778888
Q ss_pred HHHHHHhhCCCCCCCCCCHhHHHHH
Q psy1898 182 RDRLVKQDGICDKNSAPSVSSISRL 206 (230)
Q Consensus 182 ~~~L~~~~Gi~~~~~~vS~sTV~R~ 206 (230)
.+.|.. .+|+-.|+=+
T Consensus 97 ~e~l~~---------~~sy~eIRlv 112 (122)
T 3iuo_A 97 MQELGK---------DYSEEEIRLV 112 (122)
T ss_dssp HHHHTT---------TSCHHHHHHH
T ss_pred HHHccC---------cCCHHHHHHH
Confidence 887743 2577666533
No 120
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=93.33 E-value=0.043 Score=38.20 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=28.0
Q ss_pred HHHHHHHHHHH-cCCCHHHHhhhhccccchhhhHHH
Q psy1898 103 HIRLKIVEMAA-AGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 103 ~~R~rIV~l~~-~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
.+..++-.+.+ .|+|..++|+.+|||++||++|.+
T Consensus 18 ~~~~~l~~~r~~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 18 QLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 44455555544 489999999999999999999975
No 121
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=93.32 E-value=0.056 Score=36.81 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=21.1
Q ss_pred CCHHHHhhhhccccchhhhHHHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNR 138 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikR 138 (230)
.+..++|+.||||++||++|++.
T Consensus 14 ~sq~~~A~~Lgvsq~aVS~~~~~ 36 (65)
T 2cw1_A 14 KNQEYAARALGLSQKLIEEVLKR 36 (65)
T ss_dssp SCHHHHHHHSSSCHHHHHHHHHT
T ss_pred cCHHHHHHHhCCCHHHHHHHHHh
Confidence 49999999999999999999853
No 122
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=93.26 E-value=0.5 Score=39.58 Aligned_cols=68 Identities=18% Similarity=0.159 Sum_probs=45.0
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHH--hCCCCCHHHHHHHHHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKK--TNPGIFSWEIRDRLVK 187 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~--~~P~~t~~eI~~~L~~ 187 (230)
++..++|+.+|||..|+.-|.+ .|.+.|..+..+.-+..+.++.+.|..... +....+..+|++.|..
T Consensus 1 ~~IgevA~~~Gvs~~TLRyYE~----~GLl~p~~R~~~gyR~Y~~~dl~~L~~I~~lr~~~G~sL~eIk~~l~~ 70 (222)
T 2dg6_A 1 MRLADLSKRSGVSTATIKYYLR----EGLLPPGRQVNATTAEYDEDHLRRLRLVRALIQVGKVPVATAREVLGH 70 (222)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH----HTSSCCC---------CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHH----CCCCCCCeeCCCCceeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4788999999999999987754 587766433223456778887766654432 3337999999998876
No 123
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=93.24 E-value=0.053 Score=37.58 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=25.8
Q ss_pred HHHHHHHH-HcCCCHHHHhhhhccccchhhhHH
Q psy1898 105 RLKIVEMA-AAGVRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 105 R~rIV~l~-~~G~s~~~IAr~lgVS~sTV~kwi 136 (230)
+.+|..+. +.|+|..++|+.+|||++||++|.
T Consensus 11 ~~ri~~~l~~~glT~~~LA~~~Gvs~stls~~~ 43 (74)
T 1neq_A 11 RADVIAGLKKRKLSLSALSRQFGYAPTTLANAL 43 (74)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHSSCHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34455433 568999999999999999999884
No 124
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=93.23 E-value=0.094 Score=40.49 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=36.6
Q ss_pred HHHHHHHHHHH-cC-CCHHHHhhhhccccchhhhHHHHHhhhCCC
Q psy1898 103 HIRLKIVEMAA-AG-VRPCVISRQLRVSHGCVSKILNRYQETGSI 145 (230)
Q Consensus 103 ~~R~rIV~l~~-~G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v 145 (230)
+...+|+.++. +| .+..+||+.+|+|++||++.+++..+.|.+
T Consensus 7 ~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i 51 (150)
T 2w25_A 7 DIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVV 51 (150)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 44557777654 34 999999999999999999999999999976
No 125
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=93.23 E-value=0.88 Score=37.39 Aligned_cols=94 Identities=13% Similarity=0.001 Sum_probs=60.0
Q ss_pred CCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHH----------HHHHhCCCCCHHHHHHH
Q psy1898 115 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIE----------EYKKTNPGIFSWEIRDR 184 (230)
Q Consensus 115 G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~----------~l~~~~P~~t~~eI~~~ 184 (230)
+.+..+||+.++||++||++.+++..+.|.+...+. +.-.+|+.-++... .++.+.-..+..++.+.
T Consensus 20 ~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~---~~i~LT~~G~~~~~~~~~~h~~~e~~l~~~lg~~~~e~~~~ 96 (214)
T 3hrs_A 20 KITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK---AGYLLTDLGLKLVSDLYRKHRLIEVFLVHHLGYTTEEIHEE 96 (214)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT---TEEEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC---CCeEECHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 489999999999999999999999999998743321 22345665443332 33333345555554443
Q ss_pred HHHhhCCCCCCCCCCHhHHHHHHHcCCC---CCCCC
Q psy1898 185 LVKQDGICDKNSAPSVSSISRLLRGGRR---DDCDR 217 (230)
Q Consensus 185 L~~~~Gi~~~~~~vS~sTV~R~Lr~~g~---~~~~~ 217 (230)
...-..+ +|..++.++-.-.+. +||..
T Consensus 97 a~~lEh~------~s~~~~~~l~~~l~~p~~~Phg~ 126 (214)
T 3hrs_A 97 AEVLEHT------VSDHFVERLDQLLDYPKACPHGG 126 (214)
T ss_dssp HHHHHTT------SCHHHHHHHHHHTTCCSBCTTSC
T ss_pred HHHHhcc------CCHHHHHHHHHHhCCCCCCcCcC
Confidence 3331223 688888887666654 45543
No 126
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=93.22 E-value=0.084 Score=40.09 Aligned_cols=43 Identities=23% Similarity=0.272 Sum_probs=36.2
Q ss_pred HHHHHHHHHH-cC-CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 104 IRLKIVEMAA-AG-VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 104 ~R~rIV~l~~-~G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
...+|+..+. .+ .+..+||+.+|+|++||++.+++..+.|.+.
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 3456777664 33 8999999999999999999999999999763
No 127
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=93.21 E-value=0.13 Score=38.68 Aligned_cols=62 Identities=21% Similarity=0.243 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHc-C-CCHHHHhhhh--ccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHH
Q psy1898 103 HIRLKIVEMAAA-G-VRPCVISRQL--RVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIE 167 (230)
Q Consensus 103 ~~R~rIV~l~~~-G-~s~~~IAr~l--gVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~ 167 (230)
....+|+.++.. | .++.+||+.+ ++|+++|++-+++-.+.|.+....+ .--.+|+.-.+++.
T Consensus 13 ~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~~r---g~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 13 IWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLAN---GVYVITEEGEAYLN 78 (111)
T ss_dssp HHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECST---TCEEECHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEecCC---ceEEECchHHHHHH
Confidence 556788887753 5 9999999999 9999999999999999998864321 24567777666554
No 128
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=93.20 E-value=0.099 Score=43.42 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=35.5
Q ss_pred CcCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 98 RPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 98 ~~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
..+|..++. |+.++.+|+|.++||+.++||.+||...+++-.
T Consensus 174 ~~Lt~~e~~-vl~~~~~g~s~~eIa~~l~is~~tV~~~~~~~~ 215 (236)
T 2q0o_A 174 QMLSPREML-CLVWASKGKTASVTANLTGINARTVQHYLDKAR 215 (236)
T ss_dssp GSCCHHHHH-HHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHH-HHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457777764 667778999999999999999999999988755
No 129
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=93.09 E-value=0.035 Score=37.46 Aligned_cols=23 Identities=9% Similarity=0.011 Sum_probs=21.3
Q ss_pred CCHHHHhhhhccccchhhhHHHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNR 138 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikR 138 (230)
++..++|+.+|||++|+|+|++.
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 57899999999999999999985
No 130
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=93.08 E-value=0.067 Score=38.59 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=35.1
Q ss_pred HHHHHHHH-cC-CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 106 LKIVEMAA-AG-VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 106 ~rIV~l~~-~G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
.+|++++. .| .+..++|+.|+||..||.+-+.++.+.|.+.
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~ 47 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVV 47 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 35666665 45 9999999999999999999999999999763
No 131
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=93.07 E-value=0.073 Score=34.88 Aligned_cols=25 Identities=8% Similarity=0.319 Sum_probs=22.8
Q ss_pred HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
..|+|..++|+.+|||++||++|.+
T Consensus 12 ~~glsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 12 QLGLNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4589999999999999999999964
No 132
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=93.03 E-value=0.05 Score=42.00 Aligned_cols=50 Identities=18% Similarity=0.168 Sum_probs=38.4
Q ss_pred cccCCCcCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhhh
Q psy1898 93 VFINGRPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQET 142 (230)
Q Consensus 93 ~~~~g~~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e~ 142 (230)
|++.+.......|.+-|..--.|.+..++|+.+++|..||++++++.+..
T Consensus 70 YIPk~~~~~~~~Rn~~I~~~f~G~n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 70 YIPRGQALDSLIRDLRIWNDFNGRNVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp CCCCSHHHHHHHHHHHHHHHCCSSCHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred EeeCCchHHHHHHHHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34444444446777777665569999999999999999999999987753
No 133
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=93.02 E-value=0.1 Score=41.68 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHc-C-CCHHHHhhhhccccchhhhHHHHHhhhCCC
Q psy1898 103 HIRLKIVEMAAA-G-VRPCVISRQLRVSHGCVSKILNRYQETGSI 145 (230)
Q Consensus 103 ~~R~rIV~l~~~-G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v 145 (230)
+...+|+.++.. + .|..+||+.+|+|++||++.+++..+.|.+
T Consensus 17 ~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I 61 (171)
T 2ia0_A 17 DLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVI 61 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 455577876653 4 899999999999999999999999999976
No 134
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=93.02 E-value=0.076 Score=34.62 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=22.7
Q ss_pred HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
..|+|..++|+.+|||++||++|.+
T Consensus 16 ~~g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 16 KLKIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHc
Confidence 4589999999999999999999964
No 135
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=92.96 E-value=0.077 Score=36.08 Aligned_cols=25 Identities=8% Similarity=-0.068 Sum_probs=22.8
Q ss_pred HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
..|+|..++|+.+|||++||++|.+
T Consensus 22 ~~gltq~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 22 KLSLTQKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp HTTCCHHHHHHHHCSCTTHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 4599999999999999999999964
No 136
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=92.94 E-value=0.35 Score=36.78 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=29.6
Q ss_pred CHHHHhhhhccccchhhhHHHHHhhhCCCCcCC
Q psy1898 117 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 149 (230)
Q Consensus 117 s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~ 149 (230)
|.+++|+.||||+.||.+-+++-...|.+...+
T Consensus 40 ser~La~~~gVSr~tVReAl~~L~~eGlv~~~~ 72 (134)
T 4ham_A 40 SIREFASRIGVNPNTVSKAYQELERQEVIITVK 72 (134)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEc
Confidence 788999999999999999999999999875444
No 137
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=92.93 E-value=0.078 Score=34.94 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=22.9
Q ss_pred HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
..|+|..++|+.+|||++||++|.+
T Consensus 14 ~~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 14 ALKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4589999999999999999999974
No 138
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=92.93 E-value=0.037 Score=37.29 Aligned_cols=32 Identities=9% Similarity=0.145 Sum_probs=25.6
Q ss_pred HHHHHHH-HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 106 LKIVEMA-AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 106 ~rIV~l~-~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
.++-.+. ..|+|..++|+.+|||++||++|.+
T Consensus 13 ~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 13 RTLKKIRTQKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 3444433 4589999999999999999999974
No 139
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=92.87 E-value=0.1 Score=38.74 Aligned_cols=52 Identities=25% Similarity=0.257 Sum_probs=38.9
Q ss_pred cCCHHHHHHHHHHHHcC-------C-CHHHHhhhhccccchhhhHHHHHhhhCCCCcCCC
Q psy1898 99 PLPNHIRLKIVEMAAAG-------V-RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI 150 (230)
Q Consensus 99 ~~s~~~R~rIV~l~~~G-------~-s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~ 150 (230)
++..++...+......| + |..++|++|+||++||.+-+++..+.|.+...+.
T Consensus 9 ~~~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~ 68 (113)
T 3tqn_A 9 PIYQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRG 68 (113)
T ss_dssp CHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 33444555555555543 2 7889999999999999999999999998865443
No 140
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=92.78 E-value=0.057 Score=35.04 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=22.9
Q ss_pred HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
..|+|..++|+.+|||++||++|.+
T Consensus 12 ~~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 12 KKKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4689999999999999999999974
No 141
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=92.68 E-value=0.12 Score=36.19 Aligned_cols=38 Identities=5% Similarity=0.054 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHH-cCCCHHHHhhhhccccchhhhHHH
Q psy1898 100 LPNHIRLKIVEMAA-AGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 100 ~s~~~R~rIV~l~~-~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
....+-.++-.+.+ .|+|..++|+.+|||++||++|.+
T Consensus 10 ~~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 10 VTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp CCCHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34456666666555 489999999999999999999975
No 142
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=92.66 E-value=0.15 Score=39.56 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=36.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC
Q psy1898 152 GSKPRVATPDVEKRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGG 210 (230)
Q Consensus 152 g~rpr~lt~~~~~~I~~l~~~~P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~ 210 (230)
.+||++++++..+.|..++... .++.+++. . .|+ ||.+||+++++++
T Consensus 7 ~GRPtk~t~e~~e~I~~~i~~G--~sl~~i~~---~-~~~------ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 7 AGRPSDYMPEVADDICSLLSSG--ESLLKVCK---R-PGM------PDKSTVFRWLAKH 53 (140)
T ss_dssp ---CCSCCTTHHHHHHHHHHTT--CCHHHHHT---S-TTC------CCHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHCC--CcHHHHHh---c-CCC------CCHHHHHHHHHcC
Confidence 3589999999999999988764 78887775 2 566 6999999999875
No 143
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=92.65 E-value=0.1 Score=35.79 Aligned_cols=32 Identities=28% Similarity=0.277 Sum_probs=25.7
Q ss_pred HHHHHHH-HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 106 LKIVEMA-AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 106 ~rIV~l~-~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
.++-.+. ..|+|..++|+.+|||++||++|.+
T Consensus 17 ~~l~~~R~~~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 17 DLLLEARSAAGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 3444443 3599999999999999999999964
No 144
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=92.62 E-value=0.12 Score=34.72 Aligned_cols=35 Identities=6% Similarity=0.184 Sum_probs=27.4
Q ss_pred HHHHHHHHHH-HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 103 HIRLKIVEMA-AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 103 ~~R~rIV~l~-~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
.+..++-.+. ..|+|..++|+.+|||++||++|.+
T Consensus 7 ~~~~~l~~~r~~~g~sq~~lA~~~gis~~~i~~~e~ 42 (78)
T 3b7h_A 7 FVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFE 42 (78)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3444555544 4589999999999999999999964
No 145
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=92.60 E-value=0.11 Score=34.55 Aligned_cols=32 Identities=13% Similarity=0.177 Sum_probs=25.6
Q ss_pred HHHHHHH-HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 106 LKIVEMA-AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 106 ~rIV~l~-~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
.++-.+. ..|+|..++|+.+|||++||++|.+
T Consensus 16 ~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 16 QRLRELRTAKGLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 3444433 4589999999999999999999964
No 146
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=92.53 E-value=0.13 Score=35.46 Aligned_cols=35 Identities=9% Similarity=0.218 Sum_probs=27.5
Q ss_pred HHHHHHHHHH-HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 103 HIRLKIVEMA-AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 103 ~~R~rIV~l~-~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
++-.++-.+. ..|+|..++|+.+|||++||++|.+
T Consensus 12 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 12 QLANAMKLVRQQNGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 3444444444 4589999999999999999999976
No 147
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=92.51 E-value=0.12 Score=42.94 Aligned_cols=42 Identities=17% Similarity=-0.029 Sum_probs=35.5
Q ss_pred CcCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 98 RPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 98 ~~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
..+|...+ .|+.++.+|+|.++||+.++||.+||...+++-.
T Consensus 172 ~~Lt~~e~-~vl~~~~~g~s~~eIa~~l~is~~tV~~~~~~~~ 213 (234)
T 1l3l_A 172 AWLDPKEA-TYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAM 213 (234)
T ss_dssp CCCCHHHH-HHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45777777 5666778999999999999999999999988754
No 148
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=92.48 E-value=0.13 Score=44.90 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=36.1
Q ss_pred HHHHHHHHH-cCCCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 105 RLKIVEMAA-AGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 105 R~rIV~l~~-~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
-.+|..++. ++++..+||++|+||+.||+|-++..++.|.+.
T Consensus 10 ~~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~ 52 (315)
T 2w48_A 10 IVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVT 52 (315)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 345556655 569999999999999999999999999999885
No 149
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=92.47 E-value=0.2 Score=34.68 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=36.2
Q ss_pred CCcCCHHHHHHHHHHHHcC-CCHHHHhhhhccccchhhhHHH
Q psy1898 97 GRPLPNHIRLKIVEMAAAG-VRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 97 g~~~s~~~R~rIV~l~~~G-~s~~~IAr~lgVS~sTV~kwik 137 (230)
.+.|+.+.=..+|+++.+| +|...+|+.|||..+|+..=++
T Consensus 11 yr~Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk 52 (70)
T 2cob_A 11 YRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVK 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHH
Confidence 4678999999999999999 9999999999999999875544
No 150
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=92.45 E-value=1.1 Score=33.46 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=30.4
Q ss_pred CCCHHHHhhhhccccchhhhHHHHHhhhCCCCc
Q psy1898 115 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 147 (230)
Q Consensus 115 G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p 147 (230)
+.+.++||+.++++++||++.+++..+.|.+..
T Consensus 31 ~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r 63 (139)
T 2x4h_A 31 GAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKK 63 (139)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEe
Confidence 589999999999999999999999999997753
No 151
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=92.45 E-value=0.087 Score=36.10 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=22.0
Q ss_pred HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
..| |..++|+.+|||++||++|.+
T Consensus 10 ~~g-sq~~lA~~lgvs~~~is~~e~ 33 (79)
T 3bd1_A 10 KLG-SVSALAASLGVRQSAISNWRA 33 (79)
T ss_dssp HHS-SHHHHHHHHTCCHHHHHHHHH
T ss_pred HhC-CHHHHHHHHCCCHHHHHHHHH
Confidence 348 999999999999999999986
No 152
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=92.44 E-value=0.023 Score=46.24 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 100 LPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 100 ~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
+|...|.-++..+.+|+|..+||+.+|||.+||.+++.+-.
T Consensus 199 L~~~~r~vl~l~~~~g~s~~EIA~~lgis~~tV~~~~~ra~ 239 (243)
T 1l0o_C 199 LDERERLIVYLRYYKDQTQSEVASRLGISQVQMSRLEKKIL 239 (243)
T ss_dssp -----------------------------------------
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 56666655555577899999999999999999999988754
No 153
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=92.38 E-value=0.1 Score=34.87 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=22.8
Q ss_pred HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
..|+|..++|+.+|||++||++|.+
T Consensus 16 ~~gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 16 KLKIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4599999999999999999999964
No 154
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=92.36 E-value=0.065 Score=35.96 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=23.1
Q ss_pred HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
..|+|..++|+.+|||++||++|.+
T Consensus 19 ~~glsq~~lA~~~gis~~~is~~e~ 43 (73)
T 3omt_A 19 EKGKTNLWLTETLDKNKTTVSKWCT 43 (73)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4699999999999999999999974
No 155
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=92.36 E-value=0.15 Score=42.93 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=35.8
Q ss_pred CcCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhh
Q psy1898 98 RPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQE 141 (230)
Q Consensus 98 ~~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e 141 (230)
..+|...|.-+.. ..+|+|.++||+.+++|.+||...+.|-++
T Consensus 196 ~~L~~~erevl~L-~~~G~s~~EIA~~L~iS~~TVk~~l~ra~~ 238 (258)
T 3clo_A 196 NILSEREKEILRC-IRKGLSSKEIAATLYISVNTVNRHRQNILE 238 (258)
T ss_dssp TSSCHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578777765555 479999999999999999999999988664
No 156
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=92.32 E-value=0.11 Score=42.52 Aligned_cols=44 Identities=16% Similarity=0.251 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcC-CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 103 HIRLKIVEMAAAG-VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 103 ~~R~rIV~l~~~G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
..+.+|+.++.+| .+..+||+.+++|++||++-+++..+.|.+.
T Consensus 20 ~~~~~IL~~L~~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~ 64 (192)
T 1uly_A 20 DTRRKILKLLRNKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVE 64 (192)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 6677888876654 9999999999999999999999999999764
No 157
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=92.24 E-value=0.095 Score=37.16 Aligned_cols=34 Identities=12% Similarity=0.073 Sum_probs=26.5
Q ss_pred HHHHHHHHHH-cCCCHHHHhhhhccccchhhhHHH
Q psy1898 104 IRLKIVEMAA-AGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 104 ~R~rIV~l~~-~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
+-.++-.+.+ .|+|..++|+.+|||++||++|.+
T Consensus 10 ~~~~lk~~r~~~glsq~~lA~~~gis~~~is~~e~ 44 (94)
T 2kpj_A 10 FSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 3344444443 489999999999999999999964
No 158
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=92.09 E-value=0.088 Score=36.19 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=26.7
Q ss_pred HHHHHHHHHH-cCCCHHHHhhhhccccchhhhHHH
Q psy1898 104 IRLKIVEMAA-AGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 104 ~R~rIV~l~~-~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
+=.+|-.+.+ .|+|..++|+.+|||++||++|.+
T Consensus 11 ~~~~ik~~R~~~gltq~elA~~~gis~~~is~~E~ 45 (78)
T 3qq6_A 11 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIER 45 (78)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3344444443 589999999999999999999964
No 159
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=92.07 E-value=0.54 Score=35.52 Aligned_cols=34 Identities=15% Similarity=0.035 Sum_probs=30.5
Q ss_pred CHHHHhhhhccccchhhhHHHHHhhhCCCCcCCC
Q psy1898 117 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI 150 (230)
Q Consensus 117 s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~ 150 (230)
|..++|+.||||+.||.+-+++....|.+...+.
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g 70 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKELEAQKVIRTIPG 70 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 8999999999999999999999999998865443
No 160
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=92.07 E-value=0.068 Score=36.35 Aligned_cols=25 Identities=8% Similarity=0.161 Sum_probs=22.7
Q ss_pred HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
..|+|..++|+.+|||++||++|.+
T Consensus 13 ~~glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 13 RLSLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4599999999999999999999964
No 161
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=92.02 E-value=1.3 Score=36.60 Aligned_cols=92 Identities=18% Similarity=0.155 Sum_probs=58.5
Q ss_pred HcCCCH--HHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHH----------HHHhCCCCCHHH
Q psy1898 113 AAGVRP--CVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEE----------YKKTNPGIFSWE 180 (230)
Q Consensus 113 ~~G~s~--~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~----------l~~~~P~~t~~e 180 (230)
.+|.+. .+||+.++++++||++.+++..+.|.+...+. +.-.+|+.-++.... ++.+.-.++..+
T Consensus 20 ~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~~~---~~v~LT~~G~~~~~~~~~~~~~~e~~l~~~lgl~~ee 96 (226)
T 2qq9_A 20 EEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASD---RSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDINK 96 (226)
T ss_dssp HHTCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT---SBEEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred hcCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC---CCeEECHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 457766 99999999999999999999999998743221 233456654333322 222322455555
Q ss_pred HHHHHHHhhCCCCCCCCCCHhHHHHHHHcCCCC
Q psy1898 181 IRDRLVKQDGICDKNSAPSVSSISRLLRGGRRD 213 (230)
Q Consensus 181 I~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~g~~ 213 (230)
+.+....-..+ +|..++.++....+-.
T Consensus 97 ~~~~a~~leh~------~s~~~~~~l~~~l~~~ 123 (226)
T 2qq9_A 97 VHDEADRWEHV------MSDEVERRLVKVLKDV 123 (226)
T ss_dssp HHHHHHHHTTT------CCHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHhh------CCHHHHHHHHHHhCCC
Confidence 55444331222 6888888887766644
No 162
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=92.02 E-value=0.1 Score=34.39 Aligned_cols=26 Identities=15% Similarity=0.415 Sum_probs=22.9
Q ss_pred HHHcCCCHHHHhhhhccccchhhhHHH
Q psy1898 111 MAAAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 111 l~~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
+.+.| +..++|+.+|||++||++|++
T Consensus 10 ~~~~g-s~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 10 LEEHG-TQSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp HHHTC-CHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHcC-CHHHHHHHHCcCHHHHHHHHc
Confidence 34557 999999999999999999984
No 163
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=91.99 E-value=0.14 Score=34.99 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=26.1
Q ss_pred HHHHHHHH-HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 105 RLKIVEMA-AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 105 R~rIV~l~-~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
-.++-.+. ..|+|..++|+.+|||++||++|.+
T Consensus 12 ~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 12 VQLLTKLRKEASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 34444444 4589999999999999999999974
No 164
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=91.97 E-value=0.64 Score=34.88 Aligned_cols=57 Identities=16% Similarity=0.055 Sum_probs=40.2
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCC-CCCCCCCCHHHHHHHHHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIG-GSKPRVATPDVEKRIEEYK 170 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~g-g~rpr~lt~~~~~~I~~l~ 170 (230)
.+.+..+||+.++++++||++.+++..+.|-+... +.. +...-.+|+.-.+.+....
T Consensus 53 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~ 112 (148)
T 3nrv_A 53 SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS 112 (148)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHH
Confidence 35999999999999999999999999999976322 111 1234466777665555443
No 165
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=91.93 E-value=0.22 Score=35.28 Aligned_cols=44 Identities=25% Similarity=0.352 Sum_probs=36.4
Q ss_pred HHHHHHHHHHH--cCCCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 103 HIRLKIVEMAA--AGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 103 ~~R~rIV~l~~--~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
..+..|+..+. .+.+..+||+.++++++||++.+++..+.|-+.
T Consensus 20 ~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~ 65 (109)
T 1sfx_A 20 PSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVR 65 (109)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34556666443 469999999999999999999999999999774
No 166
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=91.84 E-value=0.16 Score=35.89 Aligned_cols=44 Identities=11% Similarity=0.258 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHc--CCCHHHHhhhhccccc-hhhhHHHHHhhhCCCC
Q psy1898 103 HIRLKIVEMAAA--GVRPCVISRQLRVSHG-CVSKILNRYQETGSIR 146 (230)
Q Consensus 103 ~~R~rIV~l~~~--G~s~~~IAr~lgVS~s-TV~kwikRy~e~G~v~ 146 (230)
+.+.+|+.+++. +.+..+||+.|+|+.. +|.+-+..-.+.|.+.
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEE
Confidence 678889987653 4999999999999999 9999999999999886
No 167
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=91.76 E-value=0.53 Score=35.28 Aligned_cols=57 Identities=11% Similarity=-0.016 Sum_probs=40.9
Q ss_pred HcCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEEY 169 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~l 169 (230)
..+.+..+||+.++++++||++.+++..+.|-+... +..+ ...-.+|++-.+.+...
T Consensus 43 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 102 (145)
T 3g3z_A 43 EGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPL 102 (145)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHH
Confidence 446999999999999999999999999999977422 1111 12335677666555443
No 168
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=91.74 E-value=0.11 Score=37.19 Aligned_cols=26 Identities=12% Similarity=0.150 Sum_probs=23.4
Q ss_pred HHcCCCHHHHhhhhccccchhhhHHH
Q psy1898 112 AAAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 112 ~~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
.+.|+|..++|+.+|||++||++|.+
T Consensus 34 ~~~glTq~eLA~~~GiS~~tis~iE~ 59 (88)
T 3t76_A 34 IDRDMKKGELREAVGVSKSTFAKLGK 59 (88)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34699999999999999999999974
No 169
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=91.73 E-value=0.39 Score=37.11 Aligned_cols=45 Identities=24% Similarity=0.085 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHh-CCCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC
Q psy1898 159 TPDVEKRIEEYKKT-NPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGG 210 (230)
Q Consensus 159 t~~~~~~I~~l~~~-~P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~ 210 (230)
|+. +..|.+.+.+ +...++.+|.+.|.+ .+. .+|.+||||.|..+
T Consensus 21 T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~-~~~-----~is~aTVYR~L~~L 66 (145)
T 2fe3_A 21 TPQ-RHAILEYLVNSMAHPTADDIYKALEG-KFP-----NMSVATVYNNLRVF 66 (145)
T ss_dssp CHH-HHHHHHHHHHCSSCCCHHHHHHHHGG-GCT-----TCCHHHHHHHHHHH
T ss_pred CHH-HHHHHHHHHhCCCCCCHHHHHHHHHH-hCC-----CCChhhHHHHHHHH
Confidence 554 3445555544 457999999999977 444 37999999998754
No 170
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=91.73 E-value=0.022 Score=41.44 Aligned_cols=46 Identities=26% Similarity=0.298 Sum_probs=35.1
Q ss_pred HHHHHHHH-HHHcC--C-CHHHHhhhhccccchhhhHHHHHhhhCCCCcC
Q psy1898 103 HIRLKIVE-MAAAG--V-RPCVISRQLRVSHGCVSKILNRYQETGSIRPG 148 (230)
Q Consensus 103 ~~R~rIV~-l~~~G--~-s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~ 148 (230)
.++..|+. .+..| + |.+++|+.|+||++||++-++...+.|.+...
T Consensus 19 ~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 19 HFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp HHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEE
T ss_pred HHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 44444444 23333 3 89999999999999999999999999987543
No 171
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=91.63 E-value=0.32 Score=33.51 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHhC--CCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC
Q psy1898 159 TPDVEKRIEEYKKTN--PGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGG 210 (230)
Q Consensus 159 t~~~~~~I~~l~~~~--P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~ 210 (230)
++. +..|.+++.+. ...++.||.+.+.+ .+.. +|.+||+|.|+.+
T Consensus 16 t~~-r~~IL~~l~~~~~~~~s~~el~~~l~~-~~~~-----is~~TVyR~L~~L 62 (83)
T 2fu4_A 16 TLP-RLKILEVLQEPDNHHVSAEDLYKRLID-MGEE-----IGLATVYRVLNQF 62 (83)
T ss_dssp CHH-HHHHHHHHTSGGGSSBCHHHHHHHHHH-TTCC-----CCHHHHHHHHHHH
T ss_pred CHH-HHHHHHHHHhCCCCCCCHHHHHHHHHH-hCCC-----CCHhhHHHHHHHH
Confidence 444 34566666554 46899999999976 4442 7999999998764
No 172
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=91.57 E-value=0.21 Score=37.53 Aligned_cols=42 Identities=12% Similarity=0.299 Sum_probs=34.5
Q ss_pred HHHHHHHH-Hc-C--CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 105 RLKIVEMA-AA-G--VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 105 R~rIV~l~-~~-G--~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
+.+|+..+ .. + .+..+||+.++++++||++.+++..+.|.+.
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~ 73 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQ 73 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 44555543 33 4 6999999999999999999999999999773
No 173
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=91.55 E-value=0.13 Score=39.31 Aligned_cols=34 Identities=12% Similarity=0.016 Sum_probs=30.4
Q ss_pred CHHHHhhhhccccchhhhHHHHHhhhCCCCcCCC
Q psy1898 117 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI 150 (230)
Q Consensus 117 s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~ 150 (230)
|.+++|+.|+||++||.+-+++....|.+...+.
T Consensus 30 se~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g 63 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTLLVEAGILYKKRG 63 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecC
Confidence 8899999999999999999999999998865443
No 174
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=91.51 E-value=0.064 Score=43.39 Aligned_cols=47 Identities=13% Similarity=0.224 Sum_probs=41.1
Q ss_pred cCCHHHHHHHHHHHHcC-CCHHHHhhhhc-cccchhhhHHHHHhhhCCC
Q psy1898 99 PLPNHIRLKIVEMAAAG-VRPCVISRQLR-VSHGCVSKILNRYQETGSI 145 (230)
Q Consensus 99 ~~s~~~R~rIV~l~~~G-~s~~~IAr~lg-VS~sTV~kwikRy~e~G~v 145 (230)
.++...|.+|+.++.+| .+.++||+.|+ ++.+||+.-++..++.|.+
T Consensus 19 ~La~P~Rl~il~~L~~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv 67 (182)
T 4g6q_A 19 LLHHPLRWRITQLLIGRSLTTRELAELLPDVATTTLYRQVGILVKAGVL 67 (182)
T ss_dssp HTTSHHHHHHHHHTTTSCEEHHHHHHHCTTBCHHHHHHHHHHHHHHTSE
T ss_pred HhCCHHHHHHHHHHHhCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCe
Confidence 35567899999987654 99999999996 9999999999999999976
No 175
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=91.47 E-value=0.24 Score=40.74 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=35.5
Q ss_pred ccccccCCcccCCCcCCHHHHHHHHH-HHHcC--CCHHHHhhhhccccchhhhHHHHHh
Q psy1898 85 HGVNQLGGVFINGRPLPNHIRLKIVE-MAAAG--VRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 85 hg~~~l~~~~~~g~~~s~~~R~rIV~-l~~~G--~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
.|.+-+++. .+++|.-+|-+-.. ++.+| .+.+++|+.+|||+++|++.++-.+
T Consensus 12 ~~~~~~~N~---~rplS~yErg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A~ 67 (189)
T 3mky_B 12 SGLVPRGSH---YRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINTAK 67 (189)
T ss_dssp --------------CCCHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCccccccc---CCCCCHHHHHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHHhc
Confidence 366667777 68999988866665 55566 8999999999999999999988765
No 176
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=91.39 E-value=0.2 Score=40.33 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHc--C-CCHHHHhhhhccccchhhhHHHHHhhhCC
Q psy1898 103 HIRLKIVEMAAA--G-VRPCVISRQLRVSHGCVSKILNRYQETGS 144 (230)
Q Consensus 103 ~~R~rIV~l~~~--G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~ 144 (230)
+.+.+|+.++.+ + .|..++|+.|+||++||++-+++.++.|.
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~ 65 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGY 65 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 455677877753 3 89999999999999999999999999986
No 177
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=91.38 E-value=0.23 Score=32.66 Aligned_cols=32 Identities=9% Similarity=0.047 Sum_probs=25.6
Q ss_pred HHHHHHH-HcCCCHHHHhhhhc--cccchhhhHHH
Q psy1898 106 LKIVEMA-AAGVRPCVISRQLR--VSHGCVSKILN 137 (230)
Q Consensus 106 ~rIV~l~-~~G~s~~~IAr~lg--VS~sTV~kwik 137 (230)
.++-.+. ..|+|..++|+.+| ||++||++|.+
T Consensus 11 ~~l~~~r~~~glsq~~lA~~~g~~is~~~i~~~e~ 45 (71)
T 2ewt_A 11 AKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYER 45 (71)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCcCCHHHHHHHHC
Confidence 3343433 45899999999999 99999999975
No 178
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=91.38 E-value=0.1 Score=34.94 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=22.9
Q ss_pred HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
..|++..++|+.+|||++||++|.+
T Consensus 21 ~~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 21 EKQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4589999999999999999999974
No 179
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=91.33 E-value=0.42 Score=40.04 Aligned_cols=70 Identities=13% Similarity=0.045 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHc---CCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHhC
Q psy1898 101 PNHIRLKIVEMAAA---GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTN 173 (230)
Q Consensus 101 s~~~R~rIV~l~~~---G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~~~ 173 (230)
+.+.-.+|++++.. +++..+||+.++++++||++.++...+.|-+... .. +.-.+.+...+.-..+....
T Consensus 6 sl~r~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~-~~--~~Y~lg~~~~~l~~~~~~~~ 78 (249)
T 1mkm_A 6 TLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK-KD--KRYVPGYKLIEYGSFVLRRF 78 (249)
T ss_dssp THHHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC-TT--SCEEECTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC-CC--CcEEECHHHHHHHHHHHhcC
Confidence 34555677776653 4899999999999999999999999999987533 21 23344555444444444333
No 180
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=91.21 E-value=0.062 Score=39.38 Aligned_cols=44 Identities=16% Similarity=0.327 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcC-CCHHHHhhhh-ccccchhhhHHHHHhhhCCCC
Q psy1898 103 HIRLKIVEMAAAG-VRPCVISRQL-RVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 103 ~~R~rIV~l~~~G-~s~~~IAr~l-gVS~sTV~kwikRy~e~G~v~ 146 (230)
..+..|+..+..| .+..+||+.+ ++|++||++-+++..+.|-+.
T Consensus 14 ~~~~~IL~~L~~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~ 59 (107)
T 2hzt_A 14 KWKXVILXHLTHGKKRTSELKRLMPNITQKMLTQQLRELEADGVIN 59 (107)
T ss_dssp TTHHHHHHHHTTCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccHHHHHHHHHhCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEE
Confidence 4566677655454 9999999999 999999999999999999874
No 181
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=91.18 E-value=0.24 Score=32.22 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=30.3
Q ss_pred HHHHHHHH-HHHc-C-CCHHHHhhhh-----ccccchhhhHHHHHhhhCCC
Q psy1898 103 HIRLKIVE-MAAA-G-VRPCVISRQL-----RVSHGCVSKILNRYQETGSI 145 (230)
Q Consensus 103 ~~R~rIV~-l~~~-G-~s~~~IAr~l-----gVS~sTV~kwikRy~e~G~v 145 (230)
..|..++. ++.. + .+..+|++.| +||.+||++.++ +-|.+
T Consensus 4 ~~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v 51 (64)
T 2p5k_A 4 GQRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLV 51 (64)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCE
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCE
Confidence 45666554 4443 3 8999999999 999999999998 44544
No 182
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=91.15 E-value=0.12 Score=36.80 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=38.9
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCC-CCCCCCCHHHHHHHHHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGG-SKPRVATPDVEKRIEEY 169 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg-~rpr~lt~~~~~~I~~l 169 (230)
.+..+||+.++++++||++.+++..+.|-+. .+..+ ..--.+|+.-.+.+...
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~-~~~d~R~~~v~LT~~G~~~~~~~ 84 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMVE-CELEGRTKIIRLTDKGQKIAQQI 84 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSEE-EEEETTEEEEEECHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCcc-CCCCCCeEEEEEChhHHHHHHHH
Confidence 8999999999999999999999999999882 22211 12345677665554443
No 183
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=91.14 E-value=0.057 Score=48.21 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=33.4
Q ss_pred HHHHHHH-HcCCCHHHHhhhhccccchhhhHHHHHhhhCCC
Q psy1898 106 LKIVEMA-AAGVRPCVISRQLRVSHGCVSKILNRYQETGSI 145 (230)
Q Consensus 106 ~rIV~l~-~~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v 145 (230)
.+|+.++ ....|..+||+.+++|++||++.+++..+.|.+
T Consensus 23 ~~il~~l~~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli 63 (380)
T 2hoe_A 23 SRILKRIMKSPVSRVELAEELGLTKTTVGEIAKIFLEKGIV 63 (380)
T ss_dssp CCSHHHHHHSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 3455533 344999999999999999999999999999976
No 184
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=91.11 E-value=0.26 Score=31.25 Aligned_cols=44 Identities=23% Similarity=0.232 Sum_probs=31.8
Q ss_pred CCCCCCC--HHHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHc
Q psy1898 153 SKPRVAT--PDVEKRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRG 209 (230)
Q Consensus 153 ~rpr~lt--~~~~~~I~~l~~~~P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~ 209 (230)
++|..++ ++..+.+..+..+ ..+..+|++.| | +|.+||++++++
T Consensus 9 g~~~~l~~~~~~~~~i~~l~~~--g~s~~eIA~~l----g-------is~~TV~~~l~~ 54 (55)
T 2x48_A 9 GVRYYVESEDDLVSVAHELAKM--GYTVQQIANAL----G-------VSERKVRRYLES 54 (55)
T ss_dssp TEEEEECSHHHHHHHHHHHHHT--TCCHHHHHHHH----T-------SCHHHHHHHHTC
T ss_pred cHHHHHhcCHHHHHHHHHHHHc--CCCHHHHHHHH----C-------cCHHHHHHHHHh
Confidence 3555667 7777777766533 47898888765 4 499999999865
No 185
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=91.04 E-value=0.11 Score=35.32 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=23.1
Q ss_pred HHHcCCCHHHHhhhhccccchhhhHHHH
Q psy1898 111 MAAAGVRPCVISRQLRVSHGCVSKILNR 138 (230)
Q Consensus 111 l~~~G~s~~~IAr~lgVS~sTV~kwikR 138 (230)
+.+.+ +..++|+.|+||+++|++|++.
T Consensus 10 ~~~~~-s~t~aA~~L~vtQ~AVS~~ir~ 36 (66)
T 2ovg_A 10 YAMRF-GQTKTAKDLGVYPSSINQAIHA 36 (66)
T ss_dssp HHHHH-CHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHC-CHHHHHHHhCCCHHHHHHHHHh
Confidence 34445 9999999999999999999964
No 186
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=91.01 E-value=0.14 Score=37.73 Aligned_cols=43 Identities=14% Similarity=0.288 Sum_probs=36.2
Q ss_pred HHHHHHHHH-HcCCCHHHHhhhh-ccccchhhhHHHHHhhhCCCC
Q psy1898 104 IRLKIVEMA-AAGVRPCVISRQL-RVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 104 ~R~rIV~l~-~~G~s~~~IAr~l-gVS~sTV~kwikRy~e~G~v~ 146 (230)
.+..|+..+ ..+.+..+||+.+ +++++||++-+++..+.|.+.
T Consensus 23 ~~~~IL~~L~~~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~ 67 (112)
T 1z7u_A 23 WKLSLMDELFQGTKRNGELMRALDGITQRVLTDRLREMEKDGLVH 67 (112)
T ss_dssp THHHHHHHHHHSCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEE
T ss_pred cHHHHHHHHHhCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEE
Confidence 455666544 4459999999999 999999999999999999874
No 187
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=91.00 E-value=0.16 Score=38.61 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHc---CCCHHHHhhhh-----ccccchhhhHHHHHhhhCCC
Q psy1898 103 HIRLKIVEMAAA---GVRPCVISRQL-----RVSHGCVSKILNRYQETGSI 145 (230)
Q Consensus 103 ~~R~rIV~l~~~---G~s~~~IAr~l-----gVS~sTV~kwikRy~e~G~v 145 (230)
..|..|++++.+ -.|..+|.+.+ +||.+||||-++.+.+.|.+
T Consensus 11 ~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 11 RQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 678888887753 38999999998 89999999999999999976
No 188
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=90.98 E-value=0.2 Score=34.21 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=25.4
Q ss_pred HHHHHHH-HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 106 LKIVEMA-AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 106 ~rIV~l~-~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
.++-.+. ..|+|..++|+.+|||++||++|.+
T Consensus 14 ~~lk~~R~~~glsq~~lA~~~gis~~~i~~~e~ 46 (82)
T 3s8q_A 14 FVIKKIRLEKGMTQEDLAYKSNLDRTYISGIER 46 (82)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 3333333 4589999999999999999999964
No 189
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=90.95 E-value=0.3 Score=35.65 Aligned_cols=90 Identities=16% Similarity=0.118 Sum_probs=56.0
Q ss_pred HHHHHHHHc----CCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHH
Q psy1898 106 LKIVEMAAA----GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSWEI 181 (230)
Q Consensus 106 ~rIV~l~~~----G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~~~P~~t~~eI 181 (230)
.+++.++.+ ..+..++|+.+++|+.++++..+++- |.. +.. -+...-.+....++ .+++.+..+|
T Consensus 10 ~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~--G~s-~~~-------~~~~~Rl~~A~~lL-~~~~~~i~eI 78 (113)
T 3oio_A 10 TEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYL--GTV-PSK-------YYLELRLNRARQLL-QQTSKSIVQI 78 (113)
T ss_dssp HHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHT--SSC-HHH-------HHHHHHHHHHHHHH-HHCCCCHHHH
T ss_pred HHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHH--CcC-HHH-------HHHHHHHHHHHHHH-HcCCCCHHHH
Confidence 345554443 48999999999999999998877542 321 100 00111122223344 3467888887
Q ss_pred HHHHHHhhCCCCCCCCCCHhHHHHHHHcC-CCCCCC
Q psy1898 182 RDRLVKQDGICDKNSAPSVSSISRLLRGG-RRDDCD 216 (230)
Q Consensus 182 ~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~-g~~~~~ 216 (230)
+.. .|.. +.+...|..++. |..|..
T Consensus 79 A~~----~Gf~------~~s~F~r~Fk~~~G~tP~~ 104 (113)
T 3oio_A 79 GLA----CGFS------SGPHFSSTYRNHFNITPRE 104 (113)
T ss_dssp HHH----TTCS------CHHHHHHHHHHHHSSCHHH
T ss_pred HHH----HCCC------CHHHHHHHHHHHHCcCHHH
Confidence 763 6875 888999888775 666653
No 190
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=90.90 E-value=0.2 Score=34.94 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=35.5
Q ss_pred HcCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSWE 180 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~~~P~~t~~e 180 (230)
..|+|..++|+.+|||++||++|.+ |.. ..+.+....|...+.-.+......
T Consensus 28 ~~glsq~~lA~~~gis~~~is~~e~-----g~~-----------~~~~~~l~~ia~~l~v~~~~l~~~ 79 (92)
T 1lmb_3 28 ELGLSQESVADKMGMGQSGVGALFN-----GIN-----------ALNAYNAALLAKILKVSVEEFSPS 79 (92)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT-----TSS-----------CCCHHHHHHHHHHHTSCGGGTCHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc-----CCC-----------CCCHHHHHHHHHHHCCCHHHHhhh
Confidence 4599999999999999999999974 221 124555556666665455444333
No 191
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=90.89 E-value=0.54 Score=36.40 Aligned_cols=45 Identities=20% Similarity=0.102 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC
Q psy1898 159 TPDVEKRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGG 210 (230)
Q Consensus 159 t~~~~~~I~~l~~~~P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~ 210 (230)
|+. +..|.+.+.+.+..++.+|.+.|.+ .+. .+|.+||||.|..+
T Consensus 18 T~q-R~~Il~~l~~~~h~ta~ei~~~l~~-~~~-----~is~~TVYR~L~~L 62 (145)
T 3eyy_A 18 TPQ-RQLVLEAVDTLEHATPDDILGEVRK-TAS-----GINISTVYRTLELL 62 (145)
T ss_dssp CHH-HHHHHHHHHHHSSBCHHHHHHHHHT-TCT-----TCCHHHHHHHHHHH
T ss_pred CHH-HHHHHHHHHhcCCCCHHHHHHHHHh-hCC-----CCCHhHHHHHHHHH
Confidence 554 3444444444347899999999987 444 37999999998754
No 192
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=90.88 E-value=0.16 Score=35.94 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHhCC---CCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC
Q psy1898 158 ATPDVEKRIEEYKKTNP---GIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGG 210 (230)
Q Consensus 158 lt~~~~~~I~~l~~~~P---~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~ 210 (230)
+..+..+.|..++.+++ .+++.+|++.| | +|.+||++.|.++
T Consensus 7 ~~~~~~~~IL~~L~~~~pg~~~t~~eLA~~L----g-------vsr~tV~~~L~~L 51 (81)
T 1qbj_A 7 IYQDQEQRILKFLEELGEGKATTAHDLSGKL----G-------TPKKEINRVLYSL 51 (81)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCBCHHHHHHHH----T-------CCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCCCCcCHHHHHHHH----C-------cCHHHHHHHHHHH
Confidence 34566778888888888 89999999876 3 4999999998765
No 193
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=90.84 E-value=0.21 Score=34.84 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=26.2
Q ss_pred HHHHHHHH-HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 105 RLKIVEMA-AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 105 R~rIV~l~-~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
-.++-.+. ..|+|..++|+.+|||++||++|.+
T Consensus 16 g~~l~~~R~~~gltq~elA~~~gis~~~is~~E~ 49 (86)
T 3eus_A 16 CQRLRQARLDAGLTQADLAERLDKPQSFVAKVET 49 (86)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 34444444 3599999999999999999999963
No 194
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=90.80 E-value=0.27 Score=38.05 Aligned_cols=44 Identities=23% Similarity=0.248 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHc---CCCHHHHhhhh-----ccccchhhhHHHHHhhhCCCC
Q psy1898 103 HIRLKIVEMAAA---GVRPCVISRQL-----RVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 103 ~~R~rIV~l~~~---G~s~~~IAr~l-----gVS~sTV~kwikRy~e~G~v~ 146 (230)
..|..|++.+.+ ..|..+|...+ +||.+|||+-++.+.+.|.+.
T Consensus 22 ~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 22 PQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 678889987753 38999999998 899999999999999999764
No 195
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=90.79 E-value=0.43 Score=36.43 Aligned_cols=45 Identities=13% Similarity=0.148 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHhC--CCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC
Q psy1898 159 TPDVEKRIEEYKKTN--PGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGG 210 (230)
Q Consensus 159 t~~~~~~I~~l~~~~--P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~ 210 (230)
|+. +..|.+.+.+. ...++.||.+.|.+ .+. .+|.+||||.|..+
T Consensus 17 T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~-~~~-----~is~aTVYR~L~~L 63 (136)
T 1mzb_A 17 TLP-RVKILQMLDSAEQRHMSAEDVYKALME-AGE-----DVGLATVYRVLTQF 63 (136)
T ss_dssp CHH-HHHHHHHHHCC-CCSBCHHHHHHHHHH-TTC-----CCCHHHHHHHHHHH
T ss_pred CHH-HHHHHHHHHhCCCCCCCHHHHHHHHHh-hCC-----CCCHHHHHHHHHHH
Confidence 544 44566666554 36899999999987 444 37999999998764
No 196
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=90.78 E-value=0.14 Score=40.26 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcC--CCHHHHhhhhccccchhhhHHHHHhhhCCC
Q psy1898 103 HIRLKIVEMAAAG--VRPCVISRQLRVSHGCVSKILNRYQETGSI 145 (230)
Q Consensus 103 ~~R~rIV~l~~~G--~s~~~IAr~lgVS~sTV~kwikRy~e~G~v 145 (230)
+++.+|+..+..| .+..++|+.||||++||..-+++..+.|.+
T Consensus 13 ~l~~~Il~~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli 57 (163)
T 2gqq_A 13 RIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFI 57 (163)
T ss_dssp SHHHHHHHHHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSE
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcE
Confidence 5677888866655 899999999999999999999999999965
No 197
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=90.74 E-value=0.23 Score=37.74 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=31.5
Q ss_pred HHHHHHHHHHh-CCCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC
Q psy1898 162 VEKRIEEYKKT-NPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGG 210 (230)
Q Consensus 162 ~~~~I~~l~~~-~P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~ 210 (230)
.+..|.+.+.+ +...|+.||.+.|.+ .+. .+|.+||||.|..+
T Consensus 12 qR~~Il~~l~~~~~~~sa~ei~~~l~~-~~~-----~is~~TVYR~L~~L 55 (131)
T 2o03_A 12 QRAAISTLLETLDDFRSAQELHDELRR-RGE-----NIGLTTVYRTLQSM 55 (131)
T ss_dssp HHHHHHHHHHHCCSCEEHHHHHHHHHH-TTC-----CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH-hCC-----CCCHhhHHHHHHHH
Confidence 34555555554 446899999999987 444 37999999998754
No 198
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=90.71 E-value=0.25 Score=41.19 Aligned_cols=43 Identities=14% Similarity=0.069 Sum_probs=35.5
Q ss_pred CCcCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 97 GRPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 97 g~~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
...+|..++ +|+.++.+|++.++||+.++||..||..-+++-.
T Consensus 173 ~~~Lt~re~-~vl~~~~~G~s~~eIa~~l~is~~tV~~~~~~~~ 215 (237)
T 3szt_A 173 NVRLTARET-EMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAM 215 (237)
T ss_dssp GCCCCHHHH-HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHH-HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345666555 6777888999999999999999999999988754
No 199
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=90.67 E-value=0.36 Score=33.90 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=23.2
Q ss_pred HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
..|+|..++|+.+|||++||++|.+
T Consensus 19 ~~gltq~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 19 ELNVSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4589999999999999999999986
No 200
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=90.65 E-value=0.14 Score=35.76 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHhCC---CCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC
Q psy1898 158 ATPDVEKRIEEYKKTNP---GIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGG 210 (230)
Q Consensus 158 lt~~~~~~I~~l~~~~P---~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~ 210 (230)
++++.+..|..++.+++ .+++.||++.| | +|.+||++.|.++
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~L----g-------vs~~tV~~~L~~L 55 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKL----G-------TPKKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHH----C-------CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHH----C-------cCHHHHHHHHHHH
Confidence 45667788888999998 89999999876 3 4999999998875
No 201
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=90.65 E-value=0.27 Score=37.54 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHc----CCCHHHHhhhh-----ccccchhhhHHHHHhhhCCCC
Q psy1898 103 HIRLKIVEMAAA----GVRPCVISRQL-----RVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 103 ~~R~rIV~l~~~----G~s~~~IAr~l-----gVS~sTV~kwikRy~e~G~v~ 146 (230)
..|..|++.+.+ -.|..+|.+.+ +||.+|||+-++.+.+.|.+.
T Consensus 18 ~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 18 LPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 678889987753 37999999998 799999999999999999763
No 202
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=90.56 E-value=0.22 Score=37.51 Aligned_cols=25 Identities=8% Similarity=-0.068 Sum_probs=23.0
Q ss_pred HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
+.|+|..++|+.+|||++||++|.+
T Consensus 82 ~~glsq~~la~~~g~s~~~i~~~E~ 106 (133)
T 3o9x_A 82 KLSLTQKEASEIFGGGVNAFSRYEK 106 (133)
T ss_dssp HTTCCHHHHHHHHCSCTTHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 4599999999999999999999975
No 203
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=90.55 E-value=0.16 Score=37.22 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=27.0
Q ss_pred HHHHHHHHH-HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 104 IRLKIVEMA-AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 104 ~R~rIV~l~-~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
+-.++-.+. ..|+|..++|+.+|||++||++|.+
T Consensus 10 ~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 10 FAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 334444444 3599999999999999999999975
No 204
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=90.47 E-value=0.45 Score=37.08 Aligned_cols=43 Identities=16% Similarity=0.094 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC
Q psy1898 162 VEKRIEEYKKTN-PGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGG 210 (230)
Q Consensus 162 ~~~~I~~l~~~~-P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~ 210 (230)
.+..|.+.+.+. ...++.||.+.|.+ .+.. +|.+||||.|..+
T Consensus 28 qR~~IL~~l~~~~~~~sa~ei~~~l~~-~~~~-----is~aTVYR~L~~L 71 (150)
T 2xig_A 28 QREEVVSVLYRSGTHLSPEEITHSIRQ-KDKN-----TSISSVYRILNFL 71 (150)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHHH-HSTT-----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH-hCCC-----CCHhhHHHHHHHH
Confidence 345566566553 46899999999987 4443 7999999998754
No 205
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=90.28 E-value=0.23 Score=44.47 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHc-C-CCHHHHhhhhccccchhhhHHHHHhhhCCC
Q psy1898 103 HIRLKIVEMAAA-G-VRPCVISRQLRVSHGCVSKILNRYQETGSI 145 (230)
Q Consensus 103 ~~R~rIV~l~~~-G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v 145 (230)
.-+.+|+.++.. | .|..+||+.+++|++||++.+++..+.|.+
T Consensus 16 ~n~~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i 60 (406)
T 1z6r_A 16 TNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLV 60 (406)
T ss_dssp HHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcE
Confidence 345567776654 4 999999999999999999999999999976
No 206
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=90.07 E-value=0.74 Score=34.74 Aligned_cols=65 Identities=11% Similarity=0.164 Sum_probs=44.0
Q ss_pred HHHHHHH-H-cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCc--CCC-CCCC--CCCCCHHHHHHHHHHH
Q psy1898 106 LKIVEMA-A-AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP--GVI-GGSK--PRVATPDVEKRIEEYK 170 (230)
Q Consensus 106 ~rIV~l~-~-~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p--~~~-gg~r--pr~lt~~~~~~I~~l~ 170 (230)
..|+..+ . .+.+..+||+.++++++||++.+++..+.|-+.. .+- ..+| .-.+|+.-.+.+....
T Consensus 44 ~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~ 115 (154)
T 2qww_A 44 LAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRST 115 (154)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHH
Confidence 3444433 3 3589999999999999999999999999997743 221 1112 2356777665555443
No 207
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=90.00 E-value=0.18 Score=36.12 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=22.6
Q ss_pred HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
..|+|..++|+.+|||++||++|.+
T Consensus 41 ~~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 41 ALKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 3589999999999999999999953
No 208
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=89.94 E-value=0.58 Score=37.12 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcC-CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHH
Q psy1898 103 HIRLKIVEMAAAG-VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSWEI 181 (230)
Q Consensus 103 ~~R~rIV~l~~~G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~~~P~~t~~eI 181 (230)
+.+.+|++.+++| .|..+||+.+|+|.+-|.-.+.....+|-+..-.+|..+--.+... +++. .+.+ ...|+
T Consensus 11 erk~~ILE~Lk~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~GK~ayw~L~~s--~y~~-kV~d----ilrel 83 (165)
T 2vxz_A 11 VRLRDILALLADGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNVALVCLSMD--QYRQ-LVDG----MIREV 83 (165)
T ss_dssp HHHHHHHHHHTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEETTEEEEESCHH--HHHH-HHHH----HHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceEEEEEccEEEEEecHH--HHHH-HHHH----HHHHH
Confidence 6678888877787 9999999999999999999999889999875544432222233322 2222 2211 23444
Q ss_pred HHHHHHhhCCCCCCCCCCHhHHHHHHHc
Q psy1898 182 RDRLVKQDGICDKNSAPSVSSISRLLRG 209 (230)
Q Consensus 182 ~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~ 209 (230)
...|.+ .|+. -++.+-.+|.+.+
T Consensus 84 ~~~l~s-~gvk----~i~p~~l~~li~~ 106 (165)
T 2vxz_A 84 ERLVTT-NKLK----FISPPRLHDLIIK 106 (165)
T ss_dssp HHHHHH-TTCS----EECHHHHHHHHHH
T ss_pred HHHHHH-cCCe----eeCcHHHHHHHHh
Confidence 455544 6765 3677777776654
No 209
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=89.93 E-value=0.58 Score=39.75 Aligned_cols=69 Identities=10% Similarity=-0.005 Sum_probs=48.9
Q ss_pred CCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHH
Q psy1898 115 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKK-TNPGIFSWEIRDRLVK 187 (230)
Q Consensus 115 G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~-~~P~~t~~eI~~~L~~ 187 (230)
.+++.++|+.+|||..|+.-|.+ .|.+.|..+..+.-+..+.++...|..... ..-..++.+|++.|..
T Consensus 3 ~~tI~evA~~~gvs~~TLRyYe~----~GLL~p~~~~~~GyR~Y~~~dl~~L~~I~~lr~~G~sL~eIk~~l~~ 72 (249)
T 3qao_A 3 AMQIKELAELTGVSVRTLHHYDK----IGLLVPQKDDWNGYRIYSEKDVDKLQQILFFKELDFPLKKIQQILDD 72 (249)
T ss_dssp CBCHHHHHHHHCCCHHHHHHHHH----TTSSCCEECTTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHH----CCCCCCceECCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHhcc
Confidence 47899999999999999887654 688877653233456778877666644332 3446888888887753
No 210
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=89.92 E-value=0.095 Score=43.25 Aligned_cols=44 Identities=27% Similarity=0.292 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHc-CCCHHHHhhhhccccchhhhHHHHHhhhCCC
Q psy1898 102 NHIRLKIVEMAAA-GVRPCVISRQLRVSHGCVSKILNRYQETGSI 145 (230)
Q Consensus 102 ~~~R~rIV~l~~~-G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v 145 (230)
...|.+|+.++.. ..+..+||+.+++|.+||+.-+++..+.|.+
T Consensus 14 ~~~rl~IL~~L~~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV 58 (202)
T 2p4w_A 14 NETRRRILFLLTKRPYFVSELSRELGVGQKAVLEHLRILEEAGLI 58 (202)
T ss_dssp SHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCce
Confidence 3678888887665 4999999999999999999999999999976
No 211
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=89.83 E-value=0.85 Score=34.15 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=39.7
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEEY 169 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~l 169 (230)
.+.+..+||+.++++++||++.+++..+.|-+... +..+ ...-.+|+.-.+.+...
T Consensus 55 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 113 (150)
T 2rdp_A 55 GDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEV 113 (150)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHH
Confidence 46999999999999999999999999999977321 1111 12235677665555433
No 212
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=89.81 E-value=0.29 Score=34.65 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=39.8
Q ss_pred CCCHHHHhhhhccccch-hhhHHHHHhhhCCCCcCCCCC-CCCCCCCHHHHHHHHHH
Q psy1898 115 GVRPCVISRQLRVSHGC-VSKILNRYQETGSIRPGVIGG-SKPRVATPDVEKRIEEY 169 (230)
Q Consensus 115 G~s~~~IAr~lgVS~sT-V~kwikRy~e~G~v~p~~~gg-~rpr~lt~~~~~~I~~l 169 (230)
+.+..+||+.++++++| |++.+++..+.|-+.+.+..+ ...-.+|+.-.+.+...
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~~~ 86 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAECL 86 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHHHH
Confidence 59999999999999999 999999999999886222211 12235677655554443
No 213
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=89.62 E-value=0.5 Score=35.31 Aligned_cols=69 Identities=19% Similarity=0.178 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHH-HcCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCC--CC-CCCCCCCCHHHHHHHHHH
Q psy1898 100 LPNHIRLKIVEMA-AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV--IG-GSKPRVATPDVEKRIEEY 169 (230)
Q Consensus 100 ~s~~~R~rIV~l~-~~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~--~g-g~rpr~lt~~~~~~I~~l 169 (230)
++.. ...|+..+ ..+.+.++||+.++++++||++.+++..+.|-+...+ .. +...-.+|+.-.+.+...
T Consensus 36 lt~~-~~~iL~~l~~~~~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~ 108 (146)
T 3tgn_A 36 LTNT-QEHILMLLSEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEH 108 (146)
T ss_dssp CCHH-HHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHH
T ss_pred CCHH-HHHHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHH
Confidence 3433 34455543 4469999999999999999999999999999773221 11 123345566555444443
No 214
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=89.61 E-value=0.31 Score=38.02 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=31.1
Q ss_pred CCcCCHHHHHHHHHH-----HHcC---CCHHHHhhhhccccchhhhHHH
Q psy1898 97 GRPLPNHIRLKIVEM-----AAAG---VRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 97 g~~~s~~~R~rIV~l-----~~~G---~s~~~IAr~lgVS~sTV~kwik 137 (230)
+++-+.+.|.+|++. .+.| .|..+||+..|||++|+|+...
T Consensus 6 ~r~r~~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tlY~~F~ 54 (192)
T 2fq4_A 6 GRPRNIETQKAILSASYELLLESGFKAVTVDKIAERAKVSKATIYKWWP 54 (192)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred CCCCChHHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHHHCC
Confidence 455667888888873 2345 8999999999999999998753
No 215
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=89.59 E-value=0.29 Score=35.88 Aligned_cols=34 Identities=6% Similarity=0.039 Sum_probs=27.5
Q ss_pred HHHHHHHHHHH-cCCCHHHHhhhhccccchhhhHH
Q psy1898 103 HIRLKIVEMAA-AGVRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 103 ~~R~rIV~l~~-~G~s~~~IAr~lgVS~sTV~kwi 136 (230)
++-.+|-.+.+ .|+|..++|+.+|||++||++|.
T Consensus 36 ~lG~~ir~~R~~~glTQ~eLA~~~gvs~~~is~~E 70 (101)
T 4ghj_A 36 EIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAE 70 (101)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHH
Confidence 44455555554 59999999999999999999995
No 216
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=89.58 E-value=0.5 Score=38.57 Aligned_cols=47 Identities=15% Similarity=0.042 Sum_probs=36.4
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDV 162 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~ 162 (230)
++..++|+.||||+++|..-+++-...|.+...+..|..-..++.+.
T Consensus 36 L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~G~~V~~~~~~~ 82 (218)
T 3sxy_A 36 LNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRVGFFVTDVDEKF 82 (218)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTTEEEECCCCHHH
T ss_pred eCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCceEEcCCCHHH
Confidence 78899999999999999999999999998865544343333445543
No 217
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=89.42 E-value=0.91 Score=33.85 Aligned_cols=57 Identities=11% Similarity=0.029 Sum_probs=36.7
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEEYK 170 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~l~ 170 (230)
.+.+..+||+.++++++||++.+++..+.|-+... +..+ ...-.+|+.-.+.+....
T Consensus 50 ~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 109 (142)
T 3ech_A 50 RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAE 109 (142)
T ss_dssp TTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHHH
Confidence 46999999999999999999999999999977322 1111 123456776665554443
No 218
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=89.42 E-value=0.19 Score=35.77 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=40.7
Q ss_pred cCCCHHHH----hhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHH
Q psy1898 114 AGVRPCVI----SRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYK 170 (230)
Q Consensus 114 ~G~s~~~I----Ar~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~ 170 (230)
.+.+..+| |+.++++++||++.+++..+.|-+.....++.+.-.+|+.-.+.+....
T Consensus 21 ~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~~~ 81 (99)
T 1tbx_A 21 EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAISLK 81 (99)
T ss_dssp TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHHHHH
Confidence 35899999 9999999999999999999999774322111233456776665554443
No 219
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=89.39 E-value=0.36 Score=41.07 Aligned_cols=42 Identities=19% Similarity=0.178 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhh
Q psy1898 99 PLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQE 141 (230)
Q Consensus 99 ~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e 141 (230)
.+|..++ .|+.++.+|++.++||+.++||..||...+++-.+
T Consensus 197 ~Lt~re~-~vl~~~~~G~s~~eIA~~l~is~~TV~~~~~~~~~ 238 (265)
T 3qp6_A 197 PLSQREY-DIFHWMSRGKTNWEIATILNISERTVKFHVANVIR 238 (265)
T ss_dssp CCCHHHH-HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4665544 56666789999999999999999999999887553
No 220
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=89.19 E-value=0.41 Score=41.06 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=30.9
Q ss_pred CHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy1898 117 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKT 172 (230)
Q Consensus 117 s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~~ 172 (230)
+.++||+..|||++||++.++. ++ .++++.+++|.+..++
T Consensus 2 ti~diA~~agVS~~TVSrvLn~---------------~~-~vs~~tr~rV~~~a~~ 41 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINK---------------TR-FVAEETRNAVWAAIKE 41 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT---------------CS-CCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHcC---------------cC-CCCHHHHHHHHHHHHH
Confidence 6889999999999999999971 11 2477777777766654
No 221
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=89.18 E-value=0.44 Score=37.49 Aligned_cols=66 Identities=18% Similarity=0.130 Sum_probs=44.4
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHH---HHHHhCCCCCHHHHHHHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIE---EYKKTNPGIFSWEIRDRLV 186 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~---~l~~~~P~~t~~eI~~~L~ 186 (230)
.-++..++|+.+|||..|+..|.+ .|.+.|....+ .-+..+.++...|. .+.. -..++.+|++.|.
T Consensus 10 ~~~~i~e~A~~~gvs~~TLR~ye~----~Gll~p~r~~~-g~R~Y~~~dl~~l~~I~~lr~--~G~sl~eI~~~l~ 78 (154)
T 2zhg_A 10 ALLTPGEVAKRSGVAVSALHFYES----KGLITSIRNSG-NQRRYKRDVLRYVAIIKIAQR--IGIPLATIGEAFG 78 (154)
T ss_dssp CCBCHHHHHHHHTSCHHHHHHHHH----TTSSCCEECTT-SCEEBCTTHHHHHHHHHHHHH--HTCCHHHHHHHHC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH----cCCCCcccCCC-CCEEeCHHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 358999999999999999987754 57776542222 34556666555443 3332 2588888888774
No 222
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=89.15 E-value=0.99 Score=33.26 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=41.2
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCC-CCCCC--CCCCHHHHHHHHHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI-GGSKP--RVATPDVEKRIEEYK 170 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~-gg~rp--r~lt~~~~~~I~~l~ 170 (230)
.+.+..+||+.++++++||++.+++..+.|-+..... ..+|. -.+|+.-.+.+....
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 106 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCH 106 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHHHH
Confidence 4689999999999999999999999999997732211 11122 356777666555443
No 223
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=89.12 E-value=0.12 Score=46.98 Aligned_cols=43 Identities=12% Similarity=0.217 Sum_probs=35.9
Q ss_pred HHHHHHHHHH-cC-CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 104 IRLKIVEMAA-AG-VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 104 ~R~rIV~l~~-~G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
-+.+|+.++. .| .|..+||+.+++|++||++.+++..+.|.+.
T Consensus 40 n~~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~ 84 (429)
T 1z05_A 40 NAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIH 84 (429)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 4456776553 34 9999999999999999999999999999763
No 224
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=89.10 E-value=0.55 Score=37.14 Aligned_cols=46 Identities=7% Similarity=-0.003 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhh-CCCCCCCCCCHhHHHHHHHcC
Q psy1898 159 TPDVEKRIEEYKKTN-PGIFSWEIRDRLVKQD-GICDKNSAPSVSSISRLLRGG 210 (230)
Q Consensus 159 t~~~~~~I~~l~~~~-P~~t~~eI~~~L~~~~-Gi~~~~~~vS~sTV~R~Lr~~ 210 (230)
|+. +..|.+.+.+. ...|+.||.+.|.+.. +.. +|.+||||.|..+
T Consensus 32 T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~-----is~aTVYRtL~~L 79 (162)
T 4ets_A 32 TKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLN-----VGIATVYRTLNLL 79 (162)
T ss_dssp CHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGC-----CCHHHHHHHHHHH
T ss_pred CHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCC-----CCHHHHHHHHHHH
Confidence 444 45566666554 4689999999998731 443 7999999998754
No 225
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=89.10 E-value=1.5 Score=32.81 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=34.1
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEEY 169 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~l 169 (230)
.+.+..+||+.++++++||++.+++..+.|-+... +..+ ...-.+|++-.+.+...
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~ 114 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEF 114 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHH
Confidence 46999999999999999999999999999977422 1111 12345777666555443
No 226
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=88.98 E-value=0.46 Score=38.30 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=31.3
Q ss_pred HHHHHHH-HcCC--CHHHHhhhhccc-cchhhhHHHHHhhhCCC
Q psy1898 106 LKIVEMA-AAGV--RPCVISRQLRVS-HGCVSKILNRYQETGSI 145 (230)
Q Consensus 106 ~rIV~l~-~~G~--s~~~IAr~lgVS-~sTV~kwikRy~e~G~v 145 (230)
.++-.+. +.|+ |.+++|+.+|++ ++||++|+++..+.|.+
T Consensus 13 ~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~l~~~~~l 56 (202)
T 1jhf_A 13 DLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVI 56 (202)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHHHHHCCCc
Confidence 3444443 3488 999999999998 99999999988776644
No 227
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=88.83 E-value=0.36 Score=38.06 Aligned_cols=39 Identities=8% Similarity=0.022 Sum_probs=29.5
Q ss_pred CcCCHHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 98 RPLPNHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 98 ~~~s~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
+.-..+.|.+|++. + +.| .|..+||+..|||++|+|..-
T Consensus 5 ~~~~~~tR~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t~Y~~F 51 (210)
T 3vib_A 5 KTEALKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTRDALYWHF 51 (210)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHHHC
Confidence 44456788999873 2 345 899999999999999999863
No 228
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=88.80 E-value=0.79 Score=34.06 Aligned_cols=57 Identities=12% Similarity=-0.004 Sum_probs=41.1
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCCC-CCCCCCHHHHHHHHHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGGS-KPRVATPDVEKRIEEYK 170 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg~-rpr~lt~~~~~~I~~l~ 170 (230)
.+.+..+||+.++++++||++.+++..+.|-+... +..++ .--.+|+.-.+.+....
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~ 111 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLL 111 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 45899999999999999999999999999977432 22111 22356777666555444
No 229
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=88.57 E-value=4.2 Score=33.41 Aligned_cols=63 Identities=21% Similarity=0.187 Sum_probs=44.5
Q ss_pred HHHHHHHHH-HcCCCH--HHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHH
Q psy1898 104 IRLKIVEMA-AAGVRP--CVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEY 169 (230)
Q Consensus 104 ~R~rIV~l~-~~G~s~--~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l 169 (230)
.-.+++..+ ..|.+. .+||+.++++++||++.+++..+.|.+...+. +.-.+|+.-.+.+...
T Consensus 10 ~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~~---~~v~LT~~G~~~~~~~ 75 (230)
T 1fx7_A 10 MYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD---RHLELTEKGRALAIAV 75 (230)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT---SCEEECHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC---ccEEECHHHHHHHHHH
Confidence 334455433 458877 99999999999999999999999998753321 2345677655554433
No 230
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=88.53 E-value=0.32 Score=42.94 Aligned_cols=43 Identities=14% Similarity=0.275 Sum_probs=37.1
Q ss_pred HHHHHHHHHHH--cC--CCHHHHhhhhccccchhhhHHHHHhhhCCC
Q psy1898 103 HIRLKIVEMAA--AG--VRPCVISRQLRVSHGCVSKILNRYQETGSI 145 (230)
Q Consensus 103 ~~R~rIV~l~~--~G--~s~~~IAr~lgVS~sTV~kwikRy~e~G~v 145 (230)
+.|.+|++++. .| .|-.+||++|+||+.+|++-++..++.|..
T Consensus 3 ~~~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~ 49 (323)
T 3rkx_A 3 KYSQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCK 49 (323)
T ss_dssp CHHHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCE
T ss_pred hHHHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCe
Confidence 35778888773 34 899999999999999999999999999963
No 231
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=88.50 E-value=0.46 Score=36.98 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHc---CCCHHHHhhhh-----ccccchhhhHHHHHhhhCCC
Q psy1898 103 HIRLKIVEMAAA---GVRPCVISRQL-----RVSHGCVSKILNRYQETGSI 145 (230)
Q Consensus 103 ~~R~rIV~l~~~---G~s~~~IAr~l-----gVS~sTV~kwikRy~e~G~v 145 (230)
..|..|++.+.+ ..|..+|...+ +||.+|||+-++.+.+.|.+
T Consensus 27 ~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 27 KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 778889987753 38999999988 79999999999999999976
No 232
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=88.50 E-value=0.42 Score=40.82 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=31.1
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKT 172 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~~ 172 (230)
.+.++||+..|||++||++.++. ++ ..+++.+++|.+..++
T Consensus 3 ~ti~dvA~~agVS~~TVSrvln~---------------~~-~vs~~tr~rV~~aa~~ 43 (332)
T 2hsg_A 3 VTIYDVAREASVSMATVSRVVNG---------------NP-NVKPSTRKKVLETIER 43 (332)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHTT---------------CT-TSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC---------------CC-CCCHHHHHHHHHHHHH
Confidence 47899999999999999999862 11 2467777777665554
No 233
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=88.48 E-value=1.2 Score=33.46 Aligned_cols=57 Identities=14% Similarity=0.111 Sum_probs=39.8
Q ss_pred HHcCCCHHHHhhhhccccchhhhHHHHHhhhCCCCc----CCCCC-CCCCCCCHHHHHHHHH
Q psy1898 112 AAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP----GVIGG-SKPRVATPDVEKRIEE 168 (230)
Q Consensus 112 ~~~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p----~~~gg-~rpr~lt~~~~~~I~~ 168 (230)
...+.+..+||+.++++++||++.+++..+.|-+.. .+..+ ...-.+|+.-.+.+..
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~ 109 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKE 109 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHH
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHH
Confidence 445699999999999999999999999999997743 22211 1233567665555443
No 234
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=88.45 E-value=0.21 Score=41.81 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=38.6
Q ss_pred HHHHHHHH-HHHcC--CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCC
Q psy1898 103 HIRLKIVE-MAAAG--VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGG 152 (230)
Q Consensus 103 ~~R~rIV~-l~~~G--~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg 152 (230)
.+|..|+. .+..| ++..++|++||||++||..=+++....|.+...+.+|
T Consensus 34 ~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~~~G 86 (237)
T 3c7j_A 34 KLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVETHKG 86 (237)
T ss_dssp HHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTE
T ss_pred HHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCc
Confidence 55555554 33334 8999999999999999999999999999886554433
No 235
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=88.44 E-value=0.5 Score=36.78 Aligned_cols=45 Identities=20% Similarity=0.168 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHhC--CCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC
Q psy1898 159 TPDVEKRIEEYKKTN--PGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGG 210 (230)
Q Consensus 159 t~~~~~~I~~l~~~~--P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~ 210 (230)
|+. +..|.+.+.+. ...|+.||.+.|.+ .+. .+|.+||||.|..+
T Consensus 16 T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~-~~~-----~is~aTVYR~L~~L 62 (150)
T 2w57_A 16 TLP-RLKILEVLQQPECQHISAEELYKKLID-LGE-----EIGLATVYRVLNQF 62 (150)
T ss_dssp CHH-HHHHHHHHTSGGGSSEEHHHHHHHHHH-TTC-----CCCHHHHHHHHHHH
T ss_pred CHH-HHHHHHHHHhCCCCCCCHHHHHHHHHH-hCC-----CCCHHHHHHHHHHH
Confidence 444 44555555443 46899999999987 444 37999999998754
No 236
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=88.41 E-value=0.64 Score=34.47 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHH-cCCCHHHHhhhhccccchhhhHHH
Q psy1898 102 NHIRLKIVEMAA-AGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 102 ~~~R~rIV~l~~-~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
..+-.++-.+.+ .|+|..++|+.+|||++||++|.+
T Consensus 11 ~~~g~~lk~~R~~~glsq~~lA~~~gis~~~is~~E~ 47 (126)
T 3ivp_A 11 RALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIEN 47 (126)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 345555555554 599999999999999999999975
No 237
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=88.35 E-value=0.48 Score=34.53 Aligned_cols=40 Identities=5% Similarity=0.101 Sum_probs=31.5
Q ss_pred CcCCHHHHHHHHHHHH---cCCCHHHHhhhhccccchhhhHHH
Q psy1898 98 RPLPNHIRLKIVEMAA---AGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 98 ~~~s~~~R~rIV~l~~---~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
..+...+-.++-.+.. .|+|..++|+.+|||++||++|.+
T Consensus 29 ~~~~~~~g~~lk~~R~~~~~glsq~elA~~~gis~~~is~~E~ 71 (107)
T 2jvl_A 29 KTVGKEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYER 71 (107)
T ss_dssp CCCCHHHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3445566666666555 489999999999999999999953
No 238
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=88.34 E-value=0.46 Score=40.81 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=30.8
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKT 172 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~~ 172 (230)
.|.++||+.+|||++||++.++. + ...+++.+++|.+..++
T Consensus 11 ~ti~diA~~agVS~~TVSr~Ln~---------------~-~~vs~~tr~rV~~~~~~ 51 (344)
T 3kjx_A 11 LTLRDVSEASGVSEMTVSRVLRN---------------R-GDVSDATRARVLAAAKE 51 (344)
T ss_dssp CCHHHHHHHHCCCSHHHHHHHTT---------------C-SCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC---------------C-CCCCHHHHHHHHHHHHH
Confidence 68999999999999999999852 1 12466667776666553
No 239
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=88.32 E-value=0.48 Score=36.64 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcC-CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 104 IRLKIVEMAAAG-VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 104 ~R~rIV~l~~~G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
.+..|+..+..| .+..+|++.++||++||++-+++..+.|.+.
T Consensus 25 w~l~IL~~L~~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~ 68 (146)
T 2f2e_A 25 WSMLIVRDAFEGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMV 68 (146)
T ss_dssp SHHHHHHHHHTTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 355677655555 9999999999999999999999999999874
No 240
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=88.23 E-value=0.3 Score=35.08 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=23.0
Q ss_pred HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
..|+|..++|+.+|||++||++|.+
T Consensus 12 ~~gltq~~lA~~~gis~~~i~~~e~ 36 (111)
T 1b0n_A 12 EKGYSLSELAEKAGVAKSYLSSIER 36 (111)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4589999999999999999999975
No 241
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=88.20 E-value=1.2 Score=34.20 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=40.6
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEEYK 170 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~l~ 170 (230)
.+.+..+||+.++++++||++.+++..+.|-+... +..+ ..--.+|+.-.+.+....
T Consensus 59 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 118 (162)
T 3k0l_A 59 PNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCN 118 (162)
T ss_dssp TTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHHH
Confidence 46999999999999999999999999999977322 1111 122356776655554433
No 242
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=88.17 E-value=0.61 Score=38.14 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=36.5
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDV 162 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~ 162 (230)
++..++|++||||+++|..-+++-...|.+...+..|..-..++.+.
T Consensus 40 L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~~~G~~V~~~~~~~ 86 (222)
T 3ihu_A 40 LVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRHRGAVIRRLSLQE 86 (222)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSTTCEEECCCCHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCeEEecCCHHH
Confidence 67889999999999999999999999998865554443334445544
No 243
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=88.17 E-value=1 Score=33.13 Aligned_cols=64 Identities=8% Similarity=0.108 Sum_probs=43.1
Q ss_pred HHHHHHH-H-cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHHH
Q psy1898 106 LKIVEMA-A-AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEEY 169 (230)
Q Consensus 106 ~rIV~l~-~-~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~l 169 (230)
..|+..+ . .+.+..+||+.++++++||++.+++..+.|-+... +..+ ...-.+|+.-.+.+...
T Consensus 36 ~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~ 104 (139)
T 3bja_A 36 FGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQV 104 (139)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHH
Confidence 3444443 3 35899999999999999999999999999977321 1111 11234677666555443
No 244
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=88.13 E-value=1.5 Score=31.44 Aligned_cols=81 Identities=7% Similarity=0.019 Sum_probs=51.1
Q ss_pred HcCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCC
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSWEIRDRLVKQDGIC 192 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~~~P~~t~~eI~~~L~~~~Gi~ 192 (230)
.+..+..++|+.+++|++++++..+++- |.. +.. -+...-.+....++ .+++.+..+|+.. .|..
T Consensus 19 ~~~~~~~~lA~~~~~S~~~l~r~fk~~~--G~s-~~~-------~~~~~Rl~~A~~lL-~~~~~si~~IA~~----~Gf~ 83 (108)
T 3oou_A 19 SEGMSLKTLGNDFHINAVYLGQLFQKEM--GEH-FTD-------YLNRYRVNYAKEEL-LQTKDNLTIIAGK----SGYT 83 (108)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHH--SSC-HHH-------HHHHHHHHHHHHHH-HHCCCCHHHHHHH----TTCC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH--CcC-HHH-------HHHHHHHHHHHHHH-HcCCCCHHHHHHH----cCCC
Confidence 4469999999999999999999887543 421 100 00111122223333 3456788777763 6874
Q ss_pred CCCCCCCHhHHHHHHHcC-CCCC
Q psy1898 193 DKNSAPSVSSISRLLRGG-RRDD 214 (230)
Q Consensus 193 ~~~~~vS~sTV~R~Lr~~-g~~~ 214 (230)
+.+...|..++. |..|
T Consensus 84 ------~~s~F~r~Fk~~~G~tP 100 (108)
T 3oou_A 84 ------DMAYFYRQFKKHTGETP 100 (108)
T ss_dssp ------CHHHHHHHHHHHHSSCH
T ss_pred ------ChHHHHHHHHHHhCcCH
Confidence 888988888765 4444
No 245
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=88.09 E-value=1.3 Score=33.61 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=40.0
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCC-CCCCC--CCCCHHHHHHHHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI-GGSKP--RVATPDVEKRIEEY 169 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~-gg~rp--r~lt~~~~~~I~~l 169 (230)
.+.+..+||+.++++++||++.+++..+.|-+..... ..+|. -.+|+.-.+.+...
T Consensus 57 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 115 (154)
T 2eth_A 57 GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEI 115 (154)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHH
Confidence 4699999999999999999999999999997732211 11122 34677665555443
No 246
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=88.06 E-value=0.12 Score=43.69 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHcC-CCHHHHhhhhccccchhhhHHHHHhhhCCCCc
Q psy1898 101 PNHIRLKIVEMAAAG-VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 147 (230)
Q Consensus 101 s~~~R~rIV~l~~~G-~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p 147 (230)
....|.+|+.++..| .+..+||+.+++|++||++-++...+.|.+..
T Consensus 10 ~~~~R~~IL~~L~~g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 10 GNKVRRDLLSHLTCMECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp TSHHHHHHHHHHTTTTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 446788999877665 99999999999999999999999999997743
No 247
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=87.93 E-value=1.7 Score=33.02 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=41.8
Q ss_pred HHHHHH-H-cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCC--CCC-CCCCCCCHHHHHHHHHH
Q psy1898 107 KIVEMA-A-AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV--IGG-SKPRVATPDVEKRIEEY 169 (230)
Q Consensus 107 rIV~l~-~-~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~--~gg-~rpr~lt~~~~~~I~~l 169 (230)
.|+..+ . .+.+..+||+.++++++||++.+++..+.|-+.... ..+ ...-.+|+.-.+.+...
T Consensus 53 ~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 120 (162)
T 2fa5_A 53 RVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETV 120 (162)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHH
Confidence 344433 3 459999999999999999999999999999774221 111 12335677665555433
No 248
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=87.84 E-value=0.37 Score=40.31 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=40.4
Q ss_pred CCcCCHHHHHHHHHHHHcC-------C-CHHHHhhhhccccchhhhHHHHHhhhCCCCcCCC
Q psy1898 97 GRPLPNHIRLKIVEMAAAG-------V-RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI 150 (230)
Q Consensus 97 g~~~s~~~R~rIV~l~~~G-------~-s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~ 150 (230)
..++..++...+......| + |..++|++|+||+.||.+-++...+.|.+...+.
T Consensus 7 ~~~~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g 68 (236)
T 3edp_A 7 KKPLFEVIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNG 68 (236)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEECC
Confidence 3444445566666655543 3 7899999999999999999999999998855443
No 249
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=87.81 E-value=0.45 Score=34.29 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=26.4
Q ss_pred HHHHHHHHH-HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 104 IRLKIVEMA-AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 104 ~R~rIV~l~-~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
+-.+|-.+. ..|+|..++|+.+|||++||++|.+
T Consensus 29 ig~~lr~~R~~~gltq~elA~~~gis~~~is~iE~ 63 (99)
T 3g5g_A 29 VSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIER 63 (99)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 334444444 3589999999999999999999964
No 250
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=87.81 E-value=0.39 Score=34.17 Aligned_cols=31 Identities=13% Similarity=0.304 Sum_probs=25.0
Q ss_pred HHHHHHHHcCCCHHHHhhhhccccchhhhHHH
Q psy1898 106 LKIVEMAAAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 106 ~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
.++..+.+ |++..++|+..|||++|++.+.+
T Consensus 24 ~kLK~il~-GikQ~eLAK~iGIsqsTLSaIen 54 (83)
T 2l1p_A 24 NALKDLLK-DMNQSSLAKECPLSQSMISSIVN 54 (83)
T ss_dssp HHHHHHHT-TSCHHHHHHHSSSCHHHHHHHHT
T ss_pred HHHHHHHH-hcCHHHHHHHcCCCHHHHHHHHc
Confidence 33333334 99999999999999999999974
No 251
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=87.81 E-value=0.45 Score=35.05 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcC-CC--HHHHhhhh-ccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHH
Q psy1898 103 HIRLKIVEMAAAG-VR--PCVISRQL-RVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVE 163 (230)
Q Consensus 103 ~~R~rIV~l~~~G-~s--~~~IAr~l-gVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~ 163 (230)
..|..|+..+..| .+ ..+|++.+ +||++|+++-+++-.+.|.+..... ...--.+|+.-.
T Consensus 27 ~wrl~IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~-r~~~y~LT~~G~ 90 (111)
T 3df8_A 27 KYTMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG-QITTYALTEKGM 90 (111)
T ss_dssp TTHHHHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES-SSEEEEECHHHH
T ss_pred ccHHHHHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec-CcEEEEECccHH
Confidence 4577888776666 66 99999999 9999999999999999998753322 112335666544
No 252
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=87.80 E-value=1.4 Score=33.07 Aligned_cols=63 Identities=24% Similarity=0.218 Sum_probs=42.4
Q ss_pred HHHHHHH-H-cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHH
Q psy1898 106 LKIVEMA-A-AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEE 168 (230)
Q Consensus 106 ~rIV~l~-~-~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~ 168 (230)
..|+..+ . .+.+..+||+.++++++||++.+++..+.|-+... +..+ ..--.+|+.-.+.+..
T Consensus 43 ~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 110 (152)
T 3bj6_A 43 RAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITA 110 (152)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHH
Confidence 3444433 3 35999999999999999999999999999977322 1111 1223467765554443
No 253
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=87.75 E-value=0.32 Score=40.60 Aligned_cols=46 Identities=22% Similarity=0.174 Sum_probs=35.4
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPD 161 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~ 161 (230)
++..++|++||||++||..-+++-...|.+...+..|..-..++.+
T Consensus 52 L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~G~~V~~~~~~ 97 (239)
T 2hs5_A 52 LSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVRVPTAE 97 (239)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECCCCHH
T ss_pred eCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCeeEEeCCCHH
Confidence 7889999999999999999999999999886554433333333443
No 254
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=87.70 E-value=0.38 Score=33.93 Aligned_cols=25 Identities=12% Similarity=0.011 Sum_probs=22.7
Q ss_pred HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
..|+|..++|+.+|||++||++|.+
T Consensus 15 ~~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 15 SEYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4589999999999999999999964
No 255
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=87.63 E-value=0.47 Score=34.71 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=23.8
Q ss_pred HHHcCCCHHHHhhhhccccchhhhHHH
Q psy1898 111 MAAAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 111 l~~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
+-..|+|..++|+.+|||++||++|.+
T Consensus 23 r~~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 23 GFLDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp HHTTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345699999999999999999999974
No 256
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=87.60 E-value=0.34 Score=37.28 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC
Q psy1898 162 VEKRIEEYKKTN-PGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGG 210 (230)
Q Consensus 162 ~~~~I~~l~~~~-P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~ 210 (230)
.+..|.+.+.+. ...++.||.+.|.+ .+. .+|.+||||.|..+
T Consensus 15 qR~~Il~~L~~~~~h~sa~eI~~~l~~-~~~-----~is~aTVYR~L~~L 58 (139)
T 3mwm_A 15 QRAAVSAALQEVEEFRSAQELHDMLKH-KGD-----AVGLTTVYRTLQSL 58 (139)
T ss_dssp HHHHHHHHHTTCSSCEEHHHHHHHHHH-TTC-----CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH-hCC-----CCCHHHHHHHHHHH
Confidence 355666666554 46889999999987 444 37999999988654
No 257
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=87.44 E-value=0.34 Score=38.32 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=31.5
Q ss_pred CCCcCCHHHHHHHHHHH-----HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 96 NGRPLPNHIRLKIVEMA-----AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 96 ~g~~~s~~~R~rIV~l~-----~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
+++..+.+.|.+|++.. +.| .|..+||+..|||++|+|+..
T Consensus 5 ~~~~r~~~~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvsk~tlY~~F 53 (211)
T 3bhq_A 5 DGETRSARKDREIIQAATAAFISKGYDGTSMEEIATKAGASKQTVYKHF 53 (211)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred ccCCccHhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHc
Confidence 45556678888888732 335 899999999999999999864
No 258
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=87.38 E-value=0.47 Score=35.63 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.8
Q ss_pred HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
..|+|..++|+.+|||++||++|.+
T Consensus 51 ~~glTQ~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 51 RARLSQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4589999999999999999999964
No 259
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=87.28 E-value=0.5 Score=34.55 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=26.6
Q ss_pred HHHHHHHHH-HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 104 IRLKIVEMA-AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 104 ~R~rIV~l~-~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
+-.++-.+. ..|+|..++|+.+|||++||++|.+
T Consensus 29 ~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~ 63 (117)
T 3f52_A 29 LGAALRSFRADKGVTLRELAEASRVSPGYLSELER 63 (117)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 334444444 3599999999999999999999964
No 260
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=87.26 E-value=0.84 Score=34.91 Aligned_cols=51 Identities=25% Similarity=0.240 Sum_probs=37.8
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIE 167 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~ 167 (230)
.+.+..++|+.|+||++||++.+++..+.|.+...+. +.-.+++.-.+.+.
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~~---~~~~lT~~g~~~~~ 103 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPW---RGVFLTAEGEKLAQ 103 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETT---TEEEECHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEecC---CceEEChhHHHHHH
Confidence 3599999999999999999999999999997743321 23345665444433
No 261
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=87.25 E-value=0.8 Score=33.73 Aligned_cols=41 Identities=20% Similarity=0.393 Sum_probs=33.7
Q ss_pred HHHHHHH-H-cCCCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 106 LKIVEMA-A-AGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 106 ~rIV~l~-~-~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
..|+..+ . .+.+..+||+.++++++||++.+++..+.|-+.
T Consensus 32 ~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~ 74 (138)
T 3bpv_A 32 VACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIE 74 (138)
T ss_dssp HHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3444433 3 459999999999999999999999999999774
No 262
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=87.15 E-value=0.75 Score=33.90 Aligned_cols=64 Identities=11% Similarity=0.109 Sum_probs=43.1
Q ss_pred HHHHHHH--HcCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHHH
Q psy1898 106 LKIVEMA--AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEEY 169 (230)
Q Consensus 106 ~rIV~l~--~~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~l 169 (230)
..|+..+ ..+.+..+||+.++++++||++.+++..+.|-+... +..+ ...-.+|+.-.+.+...
T Consensus 41 ~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 109 (140)
T 2nnn_A 41 WAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAG 109 (140)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHHH
Confidence 3444433 346999999999999999999999999999977422 1111 12235677665554443
No 263
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=87.11 E-value=2 Score=30.46 Aligned_cols=83 Identities=13% Similarity=0.097 Sum_probs=52.1
Q ss_pred HHHc-CCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhh
Q psy1898 111 MAAA-GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSWEIRDRLVKQD 189 (230)
Q Consensus 111 l~~~-G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~~~P~~t~~eI~~~L~~~~ 189 (230)
.+.+ ..+..++|+.+++|++++.+..+++- |.. +.. -+...-.+....++ .+++.+..+|+.. .
T Consensus 14 ~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~--g~s-~~~-------~~~~~Rl~~A~~lL-~~~~~si~~iA~~----~ 78 (103)
T 3lsg_A 14 SYTDSQFTLSVLSEKLDLSSGYLSIMFKKNF--GIP-FQD-------YLLQKRMEKAKLLL-LTTELKNYEIAEQ----V 78 (103)
T ss_dssp HTTCTTCCHHHHHHHTTCCHHHHHHHHHHHH--SSC-HHH-------HHHHHHHHHHHHHH-HHCCCCHHHHHHH----T
T ss_pred HccCCCCCHHHHHHHHCcCHHHHHHHHHHHH--CcC-HHH-------HHHHHHHHHHHHHH-HCCCCCHHHHHHH----h
Confidence 3344 58999999999999999999877543 321 100 00111122223334 3467888877753 6
Q ss_pred CCCCCCCCCCHhHHHHHHHcC-CCCC
Q psy1898 190 GICDKNSAPSVSSISRLLRGG-RRDD 214 (230)
Q Consensus 190 Gi~~~~~~vS~sTV~R~Lr~~-g~~~ 214 (230)
|.. +.+...|..++. |..|
T Consensus 79 Gf~------~~s~F~r~Fk~~~G~tP 98 (103)
T 3lsg_A 79 GFE------DVNYFITKFKKYYQITP 98 (103)
T ss_dssp TCS------CHHHHHHHHHHHHSSCH
T ss_pred CCC------CHHHHHHHHHHHHCcCH
Confidence 885 899999988764 5544
No 264
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=87.05 E-value=0.48 Score=41.53 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHcC--CCHHHHhhhhccccchhhhHHHHHhhhCCC
Q psy1898 103 HIRLKIVEMAAAG--VRPCVISRQLRVSHGCVSKILNRYQETGSI 145 (230)
Q Consensus 103 ~~R~rIV~l~~~G--~s~~~IAr~lgVS~sTV~kwikRy~e~G~v 145 (230)
+.+.+|+.++..+ .|..++|++|+||+.||++=++..++.|.+
T Consensus 5 ~r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~ 49 (321)
T 1bia_A 5 TVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVD 49 (321)
T ss_dssp HHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCc
Confidence 5667788877654 899999999999999999999999999865
No 265
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=86.96 E-value=1.3 Score=32.74 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=40.1
Q ss_pred CCCHHHHhhhhccccchhhhHHHHHhhhCCCCc--CCCCC-CCCCCCCHHHHHHHHHHH
Q psy1898 115 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRP--GVIGG-SKPRVATPDVEKRIEEYK 170 (230)
Q Consensus 115 G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p--~~~gg-~rpr~lt~~~~~~I~~l~ 170 (230)
+.+..+||+.++++++||++.+++..+.|-+.. .+..+ ...-.+|+.-.+.+....
T Consensus 47 ~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 105 (139)
T 3eco_A 47 GLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFT 105 (139)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHHH
Confidence 789999999999999999999999999997732 22211 122356776665555443
No 266
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=86.95 E-value=0.3 Score=35.03 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=22.9
Q ss_pred HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
..|+|..++|+.+|||++||++|.+
T Consensus 29 ~~gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 29 DLDINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4599999999999999999999974
No 267
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=86.94 E-value=1.2 Score=33.23 Aligned_cols=56 Identities=13% Similarity=-0.012 Sum_probs=39.9
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEEY 169 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~l 169 (230)
.+.+..+||+.++++++||++.+++..+.|-+... +..+ ..--.+|+.-.+.+...
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 108 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTEL 108 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHH
Confidence 56999999999999999999999999999977422 1111 12235677666555443
No 268
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=86.83 E-value=0.26 Score=35.25 Aligned_cols=34 Identities=9% Similarity=0.086 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHH
Q psy1898 105 RLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRY 139 (230)
Q Consensus 105 R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy 139 (230)
...|+..+. -.+.+.+|+.+||+.+||+||..-|
T Consensus 15 es~iL~~La-~~gQ~~vAe~~GvdeStISR~k~~~ 48 (83)
T 1zs4_A 15 ESALLNKIA-MLGTEKTAEAVGVDKSQISRWKRDW 48 (83)
T ss_dssp HHHHHHHHH-HHCHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHH-HHhhHHHHHHhCCCHHHHhhhhhhH
Confidence 344444333 3679999999999999999997744
No 269
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=86.82 E-value=1.2 Score=33.92 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=42.0
Q ss_pred HHHHHHH-H-cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHH
Q psy1898 106 LKIVEMA-A-AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEE 168 (230)
Q Consensus 106 ~rIV~l~-~-~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~ 168 (230)
..|+..+ . .+.+..+||+.++++++||++.+++..+.|.+... +..+ ...-.+|+.-.+.+..
T Consensus 55 ~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 122 (162)
T 3cjn_A 55 MRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDR 122 (162)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHH
Confidence 3444433 3 35899999999999999999999999999977422 1111 1223567765554443
No 270
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=86.72 E-value=0.59 Score=34.20 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=26.7
Q ss_pred HHHHHHHHHH-HcCCCHHHHhhhhccccchhhhHH
Q psy1898 103 HIRLKIVEMA-AAGVRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 103 ~~R~rIV~l~-~~G~s~~~IAr~lgVS~sTV~kwi 136 (230)
.+-.++-.+. ..|+|..++|+.+|||++||++|.
T Consensus 21 ~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E 55 (114)
T 3vk0_A 21 VLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVE 55 (114)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3444444444 358999999999999999999995
No 271
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=86.70 E-value=0.28 Score=35.73 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=35.7
Q ss_pred HHHHHHHHHHc-CCCHHHHhhhh-ccccchhhhHHHHHhhhCCCC
Q psy1898 104 IRLKIVEMAAA-GVRPCVISRQL-RVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 104 ~R~rIV~l~~~-G~s~~~IAr~l-gVS~sTV~kwikRy~e~G~v~ 146 (230)
.+..|+..+.. +.+..+|++.+ +++++||++-+++..+.|-+.
T Consensus 26 ~~~~IL~~L~~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~ 70 (107)
T 2fsw_A 26 WTLLIIFQINRRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIK 70 (107)
T ss_dssp SHHHHHHHHTTSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred cHHHHHHHHHhCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEE
Confidence 35566665544 49999999999 599999999999999999874
No 272
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=86.68 E-value=0.45 Score=41.30 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=32.7
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKT 172 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~~ 172 (230)
.|.++||+.+|||++||++.++. .+ .++++.+++|.+..++
T Consensus 10 ~Ti~diA~~aGVS~~TVSrvLn~---------------~~-~Vs~~tr~rV~~~a~~ 50 (366)
T 3h5t_A 10 GTLASIAAKLGISRTTVSNAYNR---------------PE-QLSAELRQRILDTAED 50 (366)
T ss_dssp THHHHHHHHHTSCHHHHHHHHHC---------------GG-GSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHCC---------------CC-CCCHHHHHHHHHHHHH
Confidence 57899999999999999999862 11 2478888888877765
No 273
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=86.65 E-value=0.65 Score=35.32 Aligned_cols=63 Identities=19% Similarity=0.154 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcC-CCHHHHhhhh-ccccchhhhHHHHHhhhCCCCcCCCCCCCC---CCCCHHHHHH
Q psy1898 103 HIRLKIVEMAAAG-VRPCVISRQL-RVSHGCVSKILNRYQETGSIRPGVIGGSKP---RVATPDVEKR 165 (230)
Q Consensus 103 ~~R~rIV~l~~~G-~s~~~IAr~l-gVS~sTV~kwikRy~e~G~v~p~~~gg~rp---r~lt~~~~~~ 165 (230)
..+..|+..+..| .+..+|++.+ +|+++|+++.+++..+.|.+.....+..++ -.+|+.-.+.
T Consensus 35 ~w~l~IL~~L~~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l 102 (131)
T 1yyv_A 35 RWGVLILVALRDGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQV 102 (131)
T ss_dssp HHHHHHHHHGGGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHH
T ss_pred CcHHHHHHHHHcCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHH
Confidence 5666777655454 8999999999 799999999999999999874322111122 3567665443
No 274
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=86.56 E-value=0.51 Score=36.25 Aligned_cols=44 Identities=14% Similarity=0.125 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHc---CCCHHHHhhhh-----ccccchhhhHHHHHhhhCCCC
Q psy1898 103 HIRLKIVEMAAA---GVRPCVISRQL-----RVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 103 ~~R~rIV~l~~~---G~s~~~IAr~l-----gVS~sTV~kwikRy~e~G~v~ 146 (230)
..|..|++.+.+ -.|..+|...+ .||.+||||-++.+.+.|.+.
T Consensus 14 ~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 14 RQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 678888887754 28899999888 699999999999999999763
No 275
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=86.48 E-value=1.3 Score=33.04 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=39.9
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEEYK 170 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~l~ 170 (230)
.+.+..+||+.++++++||++.+++..+.|-+... +..+ ...-.+|+.-.+.+....
T Consensus 49 ~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 108 (147)
T 2hr3_A 49 GDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNR 108 (147)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHHH
Confidence 36999999999999999999999999999977322 1111 122356776665554443
No 276
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=86.45 E-value=0.36 Score=35.43 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=23.2
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRY 139 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy 139 (230)
.+.+.+.+|+.+||+.+||++|...+
T Consensus 22 a~~gq~~vA~~iGV~~StISR~k~~~ 47 (97)
T 1xwr_A 22 AMLGTEKTAEAVGVDKSQISRWKRDW 47 (97)
T ss_dssp HHHCHHHHHHHHTCCTTTHHHHHHHH
T ss_pred HHHhHHHHHHHhCCCHHHHHHHHhhh
Confidence 35789999999999999999998765
No 277
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=86.37 E-value=0.45 Score=37.06 Aligned_cols=43 Identities=23% Similarity=0.455 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHc----CCCHHHHhhhh-----ccccchhhhHHHHHhhhCCC
Q psy1898 103 HIRLKIVEMAAA----GVRPCVISRQL-----RVSHGCVSKILNRYQETGSI 145 (230)
Q Consensus 103 ~~R~rIV~l~~~----G~s~~~IAr~l-----gVS~sTV~kwikRy~e~G~v 145 (230)
..|..|++.+.+ -.|..+|...+ +||.+|||+-++.+.+.|.+
T Consensus 17 ~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 17 LPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 678888887743 37899999988 79999999999999999976
No 278
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=86.35 E-value=0.68 Score=34.85 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=31.1
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCc
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 147 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p 147 (230)
.+.+.++||+.++||++||++.+++..+.|.+..
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r 54 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIY 54 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 4699999999999999999999999999998743
No 279
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=86.33 E-value=0.47 Score=35.34 Aligned_cols=33 Identities=30% Similarity=0.423 Sum_probs=30.7
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
.+.+..+||+.++++++||++.+++..+.|-+.
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~ 72 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKLEELGFVR 72 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 469999999999999999999999999999774
No 280
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=86.32 E-value=0.69 Score=35.72 Aligned_cols=40 Identities=23% Similarity=0.388 Sum_probs=30.7
Q ss_pred CCcC-C-HHHHHHHHHHH-----HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 97 GRPL-P-NHIRLKIVEMA-----AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 97 g~~~-s-~~~R~rIV~l~-----~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
+++- + .+.|.+|++.. +.| .|..+||+..|||++|+|+..
T Consensus 9 ~r~r~~~~~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F 58 (208)
T 3cwr_A 9 GRPAVPDAVVRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYRFA 58 (208)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHHHHHHc
Confidence 4444 5 78888888732 344 899999999999999999874
No 281
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=86.28 E-value=0.34 Score=38.68 Aligned_cols=35 Identities=9% Similarity=0.010 Sum_probs=27.3
Q ss_pred HHHHHHHHHH-HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 103 HIRLKIVEMA-AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 103 ~~R~rIV~l~-~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
.+-.++-.+. +.|+|..++|+.+|||++|+++|.+
T Consensus 10 ~~g~~l~~~r~~~g~s~~~la~~~gis~~~ls~~e~ 45 (198)
T 2bnm_A 10 GFAELLKDRREQVKMDHAALASLLGETPETVAAWEN 45 (198)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3444444444 4589999999999999999999974
No 282
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=86.25 E-value=0.51 Score=33.96 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=30.3
Q ss_pred CCCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 115 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 115 G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
|.+.++||+.++++.+||.+++++..+-|.+.
T Consensus 36 gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 36 GIWSRDVRYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 79999999999999999999999999999774
No 283
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=86.24 E-value=2.2 Score=34.96 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=23.0
Q ss_pred HHcCCCHHHHhhhhccccchhhhHHH
Q psy1898 112 AAAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 112 ~~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
.+.|++..++|+.+|||.+||++|++
T Consensus 40 ~~~gitQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 40 QQHNIPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCChHHHHHHHh
Confidence 35699999999999999999999975
No 284
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=86.12 E-value=0.91 Score=33.73 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=41.8
Q ss_pred HHHHHHH-Hc-CCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCC-CCCCC--CCCCHHHHHHHH
Q psy1898 106 LKIVEMA-AA-GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI-GGSKP--RVATPDVEKRIE 167 (230)
Q Consensus 106 ~rIV~l~-~~-G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~-gg~rp--r~lt~~~~~~I~ 167 (230)
..|+..+ .. +.+..+||+.++++++||++.+++..+.|-+...+. ..+|. -.+|+.-.+.+.
T Consensus 40 ~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 106 (142)
T 2bv6_A 40 FLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRP 106 (142)
T ss_dssp HHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHH
Confidence 3444433 33 489999999999999999999999999997732211 11222 245666554443
No 285
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=86.12 E-value=0.88 Score=33.59 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=33.9
Q ss_pred HHHHHHH-H-cCCCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 106 LKIVEMA-A-AGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 106 ~rIV~l~-~-~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
..|+..+ . .+.+..+||+.++++++||++.+++..+.|-+.
T Consensus 34 ~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~ 76 (142)
T 3bdd_A 34 YSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYII 76 (142)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3455433 3 469999999999999999999999999999763
No 286
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=86.07 E-value=1.2 Score=33.03 Aligned_cols=56 Identities=7% Similarity=0.026 Sum_probs=40.0
Q ss_pred HcCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEE 168 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~ 168 (230)
..+.+..+||+.++++++||++.+++..+.|-+... +..+ ...-.+|+.-.+.+..
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~ 106 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNK 106 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHH
Confidence 456999999999999999999999999999977422 1111 1223567765555543
No 287
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=86.01 E-value=0.4 Score=36.91 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=27.5
Q ss_pred HHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 102 NHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 102 ~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
.+.|.+|++. + +.| .|..+||+..|||++|+|++.
T Consensus 2 ~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F 44 (189)
T 3geu_A 2 NAMKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHF 44 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCHHHHTTTC
T ss_pred chHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHh
Confidence 4667777763 2 334 999999999999999999863
No 288
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=85.98 E-value=0.47 Score=34.91 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=23.1
Q ss_pred HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
..|+|..++|+.+|||++||++|.+
T Consensus 34 ~~gltq~elA~~~gis~~~is~~E~ 58 (111)
T 3mlf_A 34 DYGLTQKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4599999999999999999999975
No 289
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=85.97 E-value=0.74 Score=38.97 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=43.3
Q ss_pred HHHHHHHHH--HcCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHH
Q psy1898 104 IRLKIVEMA--AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEK 164 (230)
Q Consensus 104 ~R~rIV~l~--~~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~ 164 (230)
...+|+..+ ..+.+.++||+.++++++||++.+++..+.|-+....+ .+.-.+++.-.+
T Consensus 153 ~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~~r--~~~~~LT~~G~~ 213 (244)
T 2wte_A 153 EEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKFGILTQKGK--DRKVELNELGLN 213 (244)
T ss_dssp HHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT--TTEEEECHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC--ccEEEECHHHHH
Confidence 445666653 34699999999999999999999999999998854321 123455665554
No 290
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=85.97 E-value=0.91 Score=33.74 Aligned_cols=54 Identities=19% Similarity=0.192 Sum_probs=38.6
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIE 167 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~ 167 (230)
.+.+..+||+.++++++||++.+++..+.|-+... +..+ ...-.+|+.-.+.+.
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 98 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYP 98 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHH
Confidence 35899999999999999999999999999977322 1111 112346776555544
No 291
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=85.95 E-value=1.4 Score=33.72 Aligned_cols=58 Identities=10% Similarity=0.095 Sum_probs=40.9
Q ss_pred HcCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEEYK 170 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~l~ 170 (230)
..+.+..+||+.++++++||++.+++..+.|-+... +..+ ..--.+|++-.+.+....
T Consensus 65 ~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 125 (161)
T 3e6m_A 65 YGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEIS 125 (161)
T ss_dssp HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHH
Confidence 346999999999999999999999999999977322 1111 122356776665554443
No 292
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=85.91 E-value=0.93 Score=33.66 Aligned_cols=56 Identities=23% Similarity=0.224 Sum_probs=39.9
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCC--CCC-CCCCCCCHHHHHHHHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV--IGG-SKPRVATPDVEKRIEEY 169 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~--~gg-~rpr~lt~~~~~~I~~l 169 (230)
.+.+..+||+.++++++||++.+++..+.|-+...+ ..+ ...-.+|+.-.+.+...
T Consensus 46 ~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~ 104 (145)
T 2a61_A 46 GPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKV 104 (145)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHHH
Confidence 469999999999999999999999999999773221 111 12235677665555433
No 293
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=85.85 E-value=0.47 Score=40.62 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhh
Q psy1898 100 LPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQE 141 (230)
Q Consensus 100 ~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e 141 (230)
+|...|.-++..+.+|+|..+||..++++.+||..++.+...
T Consensus 112 Lp~~~R~v~~L~~~eg~s~~EIA~~lgis~~tVks~l~rA~~ 153 (286)
T 3n0r_A 112 IAPRSRQAFLLTALEGFTPTEAAQILDCDFGEVERLIGDAQA 153 (286)
T ss_dssp HSCHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHeeEEEEEeeCCCCHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 555777666667779999999999999999999999988664
No 294
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=85.74 E-value=2.5 Score=32.96 Aligned_cols=54 Identities=22% Similarity=0.190 Sum_probs=38.8
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCC--CCC-CCCCCCCHHHHHHHHHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV--IGG-SKPRVATPDVEKRIEEY 169 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~--~gg-~rpr~lt~~~~~~I~~l 169 (230)
.+.++||+.++++++||++.+++..+.|-+...+ ..+ ...-.+|+.-.+.+...
T Consensus 87 ~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~ 143 (181)
T 2fbk_A 87 LRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHL 143 (181)
T ss_dssp BCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHHH
Confidence 8999999999999999999999999999773221 111 12345677666555443
No 295
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=85.71 E-value=0.99 Score=33.47 Aligned_cols=33 Identities=12% Similarity=0.285 Sum_probs=30.4
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
.+.+..+||+.++++++||++.+++..+.|-+.
T Consensus 51 ~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~ 83 (146)
T 2fbh_A 51 DSPTQRELAQSVGVEGPTLARLLDGLESQGLVR 83 (146)
T ss_dssp SCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHhCCChhhHHHHHHHHHHCCCee
Confidence 358999999999999999999999999999773
No 296
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=85.56 E-value=1.1 Score=33.06 Aligned_cols=32 Identities=9% Similarity=0.139 Sum_probs=29.9
Q ss_pred CCCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 115 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 115 G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
+.+..+||+.++++++||++.+++..+.|-+.
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~ 81 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLY 81 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEE
Confidence 58999999999999999999999999999773
No 297
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=85.41 E-value=2.1 Score=33.67 Aligned_cols=90 Identities=18% Similarity=0.265 Sum_probs=63.5
Q ss_pred ChhHHHHHHHHHhcCCChhhhhhhhccccccc----ccCCccc-------CCCcCCHHHHHHHHHH------HHcCCCHH
Q psy1898 57 PNHIRLKIVEMAAAGVRPCVISRQLRVSHGVN----QLGGVFI-------NGRPLPNHIRLKIVEM------AAAGVRPC 119 (230)
Q Consensus 57 p~~~r~~I~e~~~~g~~~~~isr~lrvshg~~----~l~~~~~-------~g~~~s~~~R~rIV~l------~~~G~s~~ 119 (230)
|+++...|++++..|++|++|.-.||-+||+- ..|.... -.-.+|.|+...|-.+ ++....-.
T Consensus 30 ~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~glapeiPEDL~~LikKAv~lrkHLe~n~kD~ 109 (151)
T 3u5c_N 30 SESVIEQIVKYARKGLTPSQIGVLLRDAHGVTQARVITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDK 109 (151)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSCHHHHSSSCHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHCCCCHHHhhhHHhccCCCCCeeeecccHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHccccH
Confidence 58899999999999999999999999999884 2222111 2445888887765542 22333333
Q ss_pred HHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 120 VISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 120 ~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
+--..|-.-.+-|++..+-|+.+|.+.
T Consensus 110 ~sK~~L~liESkI~RL~rYYk~~~~LP 136 (151)
T 3u5c_N 110 DAKFRLILIESRIHRLARYYRTVAVLP 136 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 333445567888999999999988763
No 298
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=85.38 E-value=0.54 Score=37.03 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=30.7
Q ss_pred CCcCCHHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 97 GRPLPNHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 97 g~~~s~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
+++-..+.|.+|++. + +.| .|..+||+..|||++|+|+..
T Consensus 17 ~r~r~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~F 64 (214)
T 2zb9_A 17 GRRPAEEVRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYKWW 64 (214)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHC
T ss_pred CCCccHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHHC
Confidence 344455778888872 2 345 899999999999999999864
No 299
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=85.29 E-value=1.4 Score=33.98 Aligned_cols=55 Identities=9% Similarity=0.067 Sum_probs=39.6
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEE 168 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~ 168 (230)
.+.+..+||+.++++++||++.+++..+.|-+... +..+ ...-.+|+.-.+.+..
T Consensus 58 ~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~ 115 (168)
T 2nyx_A 58 GPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQ 115 (168)
T ss_dssp CSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHH
Confidence 46999999999999999999999999999977321 1111 1223567765555443
No 300
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=85.26 E-value=0.94 Score=33.79 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=30.5
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
.+.+..+||+.++++++||++.+++..+.|-+.
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~ 85 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLIT 85 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEE
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEE
Confidence 458999999999999999999999999999774
No 301
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=85.15 E-value=0.96 Score=34.14 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=38.8
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEEY 169 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~l 169 (230)
.+.+..+||+.++++++||++.+++..+.|-+... +..+ ..--.+|++-.+.+...
T Consensus 54 ~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 112 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAV 112 (149)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHH
Confidence 46999999999999999999999999999977422 1111 12234666655555443
No 302
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=85.14 E-value=0.67 Score=36.82 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=26.2
Q ss_pred HHHHHHHH-HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 105 RLKIVEMA-AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 105 R~rIV~l~-~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
-.++-.+. +.|+|..++|+.+|||++||++|.+
T Consensus 13 ~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~ 46 (192)
T 1y9q_A 13 ANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIER 46 (192)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34444444 3589999999999999999999964
No 303
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=85.07 E-value=0.79 Score=33.85 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=39.9
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEEY 169 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~l 169 (230)
.+.+..+||+.++++++||++.+++..+.|-+... +..+ ...-.+|+.-.+.+...
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 107 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSM 107 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHHH
Confidence 46899999999999999999999999999977321 1111 11234677666555443
No 304
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=84.95 E-value=0.99 Score=36.36 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=29.3
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
.|.++||+.||+|.+||++++++..+.|.+.
T Consensus 25 ~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~ 55 (196)
T 3k2z_A 25 PSVREIARRFRITPRGALLHLIALEKKGYIE 55 (196)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHcCCCcHHHHHHHHHHHHCCCEE
Confidence 7999999999999999999999999999874
No 305
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=84.94 E-value=2.4 Score=29.52 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=32.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC
Q psy1898 154 KPRVATPDVEKRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGG 210 (230)
Q Consensus 154 rpr~lt~~~~~~I~~l~~~~P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~ 210 (230)
.|+..+++....++.+... ..+..+++.. +|| |.+||++++++.
T Consensus 19 ~~~~ys~e~k~~~v~~~~~--g~s~~~iA~~----~gI-------s~sTl~rW~k~~ 62 (87)
T 2elh_A 19 PLRSLTPRDKIHAIQRIHD--GESKASVARD----IGV-------PESTLRGWCKNE 62 (87)
T ss_dssp CCSSCCHHHHHHHHHHHHH--TCCHHHHHHH----HTC-------CHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHC--CCCHHHHHHH----HCc-------CHHHHHHHHHHH
Confidence 4667888887777777643 4777777664 565 999999999764
No 306
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=84.94 E-value=0.9 Score=35.36 Aligned_cols=37 Identities=14% Similarity=0.272 Sum_probs=29.6
Q ss_pred cCCHHHHHHHHHH-----HHcC---CCHHHHhhhhccccchhhhH
Q psy1898 99 PLPNHIRLKIVEM-----AAAG---VRPCVISRQLRVSHGCVSKI 135 (230)
Q Consensus 99 ~~s~~~R~rIV~l-----~~~G---~s~~~IAr~lgVS~sTV~kw 135 (230)
..+.+.|.+|++. .+.| .|..+||+..|||++|+|+.
T Consensus 8 ~~~~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 52 (189)
T 3vp5_A 8 SLSDEKRNRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFYQY 52 (189)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHHHH
Confidence 3566788888873 2345 79999999999999999975
No 307
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=84.90 E-value=0.78 Score=35.00 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=39.4
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEEY 169 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~l 169 (230)
.+.+..+||+.++++++||++.+++..+.|-+... +..+ ...-.+|+.-.+.+...
T Consensus 63 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~ 121 (159)
T 3s2w_A 63 DGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDM 121 (159)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHH
Confidence 46999999999999999999999999999977322 2111 11235677655555443
No 308
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=84.85 E-value=2.5 Score=31.23 Aligned_cols=45 Identities=29% Similarity=0.281 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC
Q psy1898 155 PRVATPDVEKRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGG 210 (230)
Q Consensus 155 pr~lt~~~~~~I~~l~~~~P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~ 210 (230)
.+.++.+....++.+..+++..+..+++.. +|| |.+||+++++..
T Consensus 5 r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~----~gv-------s~stl~~~~~~~ 49 (131)
T 1hlv_A 5 RRQLTFREKSRIIQEVEENPDLRKGEIARR----FNI-------PPSTLSTILKNK 49 (131)
T ss_dssp SCCCCHHHHHHHHHHHHHCTTSCHHHHHHH----HTC-------CHHHHHHHHHTH
T ss_pred ceeCCHHHHHHHHHHHHHCCCCcHHHHHHH----hCC-------CHHHHHHHHhch
Confidence 456789988888888877777777677764 465 999999999875
No 309
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=84.66 E-value=0.92 Score=41.77 Aligned_cols=41 Identities=10% Similarity=0.024 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHH----cCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 100 LPNHIRLKIVEMAA----AGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 100 ~s~~~R~rIV~l~~----~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
++...|.-|...+- +++|..+||..||||+.||..+..+..
T Consensus 376 L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~RAl 420 (438)
T 1l9z_H 376 LSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKAL 420 (438)
T ss_pred CCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 55555555555454 689999999999999999999988754
No 310
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=84.65 E-value=0.7 Score=36.57 Aligned_cols=33 Identities=9% Similarity=0.161 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcCCCHHHHhhhhccccchhhhHHH
Q psy1898 104 IRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 104 ~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
+-.++..+...- |..++|+.+|||++||++|.+
T Consensus 10 ~~~rl~~~r~~~-tq~elA~~~Gis~~~i~~~e~ 42 (189)
T 2fjr_A 10 VLDRICEAYGFS-QKIQLANHFDIASSSLSNRYT 42 (189)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhhc-CHHHHHHHhCcCHHHHHHHHh
Confidence 344444444433 999999999999999999986
No 311
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=84.58 E-value=0.58 Score=40.02 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHc---CCCHHHHhhhhccccchhhhHHHHHhhhCCCCc
Q psy1898 103 HIRLKIVEMAAA---GVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 147 (230)
Q Consensus 103 ~~R~rIV~l~~~---G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p 147 (230)
+.=..|++++.. +++..+||+.+|++++||+++++-..+.|-+..
T Consensus 30 ~Ral~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~ 77 (275)
T 3mq0_A 30 RRAVRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLAR 77 (275)
T ss_dssp HHHHHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 333567776653 489999999999999999999999999998753
No 312
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=84.53 E-value=1.4 Score=35.81 Aligned_cols=44 Identities=18% Similarity=0.096 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcCCCCC
Q psy1898 160 PDVEKRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGGRRDD 214 (230)
Q Consensus 160 ~~~~~~I~~l~~~~P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~g~~~ 214 (230)
.+-.+.|.+++.++|..+..|+++.| + ||.+||+|-|..+++..
T Consensus 11 ~eR~~~i~~~l~~~~~~~~~~la~~~----~-------vs~~TiRrDl~eL~~~~ 54 (190)
T 4a0z_A 11 DKRREAIRQQIDSNPFITDHELSDLF----Q-------VSIQTIRLDRTYLNIPE 54 (190)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHH----T-------SCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHCCCEeHHHHHHHH----C-------CCHHHHHHHHHHhcCcc
Confidence 44567889999999999999999876 2 59999999999998864
No 313
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=84.51 E-value=0.99 Score=33.99 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=38.5
Q ss_pred CCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHHHH
Q psy1898 115 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEEYK 170 (230)
Q Consensus 115 G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~l~ 170 (230)
+.+..+||+.++++++||++.+++..+.|-+... +..+ ..--.+|++-.+.+....
T Consensus 54 ~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 112 (150)
T 3fm5_A 54 GVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAK 112 (150)
T ss_dssp CCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHH
Confidence 4799999999999999999999999999977422 1111 122356776665555443
No 314
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=84.50 E-value=0.59 Score=39.02 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=35.4
Q ss_pred HHHHHHHHc---CCCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 106 LKIVEMAAA---GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 106 ~rIV~l~~~---G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
.+|++++.. +++..+||+.++++++||++.++...+.|-+.
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~ 52 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVE 52 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 467776653 48999999999999999999999999999874
No 315
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=84.47 E-value=1.5 Score=36.14 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=30.2
Q ss_pred CHHHHhhhhccccchhhhHHHHHhhhCCCCc--CCC
Q psy1898 117 RPCVISRQLRVSHGCVSKILNRYQETGSIRP--GVI 150 (230)
Q Consensus 117 s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p--~~~ 150 (230)
+..++|++||||++||..-+++-...|.+.. .+.
T Consensus 30 sE~~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~ 65 (239)
T 2di3_A 30 SERALSETLGVSRSSLREALRVLEALGTISTATGSG 65 (239)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTS
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeecccC
Confidence 5679999999999999999999999998866 554
No 316
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=84.43 E-value=0.96 Score=38.15 Aligned_cols=83 Identities=8% Similarity=0.069 Sum_probs=51.9
Q ss_pred HHHHHHHH---cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHhCCCCC-HHHH
Q psy1898 106 LKIVEMAA---AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPGIF-SWEI 181 (230)
Q Consensus 106 ~rIV~l~~---~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~~~P~~t-~~eI 181 (230)
.+|++++. .+++..+||+.+|++++||++.++...+.|-+...+. + .-.+.+...+.-.......+-.. +..+
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~~--~-~Y~lg~~~~~lg~~~~~~~~l~~~a~p~ 102 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRAD--G-SYSLGPEMLRWVRLAGRTWAPPEEVVDI 102 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTT--S-CEEECHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCC--C-eEEecHHHHHHHHHHHccCCHHHHHHHH
Confidence 45665553 3699999999999999999999999999998753322 1 33455655443333333333222 3334
Q ss_pred HHHHHHhhCC
Q psy1898 182 RDRLVKQDGI 191 (230)
Q Consensus 182 ~~~L~~~~Gi 191 (230)
.+.|.++.|.
T Consensus 103 l~~L~~~~~e 112 (260)
T 2o0y_A 103 MRQLSADTGE 112 (260)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHhHCC
Confidence 4555554553
No 317
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=84.38 E-value=0.9 Score=34.95 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=30.1
Q ss_pred cCCHHHHHHHHHH-----HHcC---CCHHHHhhhhccccchhhhHH
Q psy1898 99 PLPNHIRLKIVEM-----AAAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 99 ~~s~~~R~rIV~l-----~~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
.-+.+.|.+|++. .+.| .|..+||+..|||++|+|+..
T Consensus 13 ~~~~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F 58 (206)
T 3kz9_A 13 LSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYF 58 (206)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHHHHHc
Confidence 3456778888873 2345 899999999999999999863
No 318
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=84.38 E-value=3 Score=30.46 Aligned_cols=90 Identities=16% Similarity=0.058 Sum_probs=57.0
Q ss_pred HHHHHHHHHH----cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHH
Q psy1898 104 IRLKIVEMAA----AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSW 179 (230)
Q Consensus 104 ~R~rIV~l~~----~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~~~P~~t~~ 179 (230)
.-.+|+.++. +..+..++|+.+++|+.++.+..++ +|.. +.. -+...-.+....++ .+++.+..
T Consensus 8 ~~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~---~G~s-~~~-------~~~~~Rl~~A~~lL-~~~~~si~ 75 (120)
T 3mkl_A 8 MRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE---EETS-YSQ-------LLTECRMQRALQLI-VIHGFSIK 75 (120)
T ss_dssp HHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH---TTCC-HHH-------HHHHHHHHHHHHHH-TSTTCCHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH---cCCC-HHH-------HHHHHHHHHHHHHH-HcCCCCHH
Confidence 3445555544 3489999999999999999988764 3431 110 00111122223333 56788888
Q ss_pred HHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC-CCCCC
Q psy1898 180 EIRDRLVKQDGICDKNSAPSVSSISRLLRGG-RRDDC 215 (230)
Q Consensus 180 eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~-g~~~~ 215 (230)
+|+.. .|.. +.+...|.+++. |..|.
T Consensus 76 eIA~~----~Gf~------~~s~F~r~Fk~~~G~tP~ 102 (120)
T 3mkl_A 76 RVAVS----CGYH------SVSYFIYVFRNYYGMTPT 102 (120)
T ss_dssp HHHHH----TTCS------CHHHHHHHHHHHHSSCHH
T ss_pred HHHHH----HCCC------CHHHHHHHHHHHHCcCHH
Confidence 87763 6874 889999988875 66665
No 319
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=84.34 E-value=0.78 Score=43.81 Aligned_cols=43 Identities=9% Similarity=0.003 Sum_probs=35.1
Q ss_pred cCCHHHHHHHHHHHH----cCCCHHHHhhhhccccchhhhHHHHHhh
Q psy1898 99 PLPNHIRLKIVEMAA----AGVRPCVISRQLRVSHGCVSKILNRYQE 141 (230)
Q Consensus 99 ~~s~~~R~rIV~l~~----~G~s~~~IAr~lgVS~sTV~kwikRy~e 141 (230)
.+|...|.-+...+- +|+|..+||+.||||..||..++.+...
T Consensus 550 ~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~ 596 (613)
T 3iyd_F 550 GLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR 596 (613)
T ss_dssp SSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 467777765555555 8999999999999999999999988653
No 320
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=84.31 E-value=0.76 Score=35.54 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=28.1
Q ss_pred HHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHHH
Q psy1898 102 NHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 102 ~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwik 137 (230)
.+.|.+|++. + +.| .|..+||+..|||++|+|+...
T Consensus 6 ~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 49 (195)
T 2dg7_A 6 PGAEQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRYFP 49 (195)
T ss_dssp TTHHHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHHHcC
Confidence 3567777762 3 345 8999999999999999998743
No 321
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=84.25 E-value=0.38 Score=35.01 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=22.8
Q ss_pred HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
..|+|..++|+.+|||++||++|.+
T Consensus 22 ~~glsq~~lA~~~gis~~~is~~e~ 46 (113)
T 2eby_A 22 PLDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4589999999999999999999974
No 322
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=84.17 E-value=1 Score=30.82 Aligned_cols=43 Identities=14% Similarity=0.302 Sum_probs=34.4
Q ss_pred HHHHHHHHH-Hc-CCCHHHHhhhhc----cccchhhhHHHHHhhhCCCC
Q psy1898 104 IRLKIVEMA-AA-GVRPCVISRQLR----VSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 104 ~R~rIV~l~-~~-G~s~~~IAr~lg----VS~sTV~kwikRy~e~G~v~ 146 (230)
.+..|+..+ .. +.+..+|++.++ ++++||++.+++..+.|.+.
T Consensus 10 ~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~ 58 (82)
T 1p6r_A 10 AELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALN 58 (82)
T ss_dssp HHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeE
Confidence 344555544 33 599999999997 68999999999999999874
No 323
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=84.11 E-value=1.2 Score=34.71 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=29.3
Q ss_pred CHHHHHHHHHH-----HHcC---CCHHHHhhhhccccchhhhHH
Q psy1898 101 PNHIRLKIVEM-----AAAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 101 s~~~R~rIV~l-----~~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
+.+.|.+|++. .+.| .|..+||+..|||++|+|+..
T Consensus 11 ~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F 54 (217)
T 3nrg_A 11 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYF 54 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCTTGGGGTC
T ss_pred hHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHHHc
Confidence 56788888873 2445 899999999999999999853
No 324
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=84.06 E-value=0.67 Score=35.80 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=28.0
Q ss_pred CHHHHHHHHHH-----HHcC---CCHHHHhhhhccccchhhhH
Q psy1898 101 PNHIRLKIVEM-----AAAG---VRPCVISRQLRVSHGCVSKI 135 (230)
Q Consensus 101 s~~~R~rIV~l-----~~~G---~s~~~IAr~lgVS~sTV~kw 135 (230)
..+.|.+|++. .+.| .|..+||+..|||++|+|+.
T Consensus 9 ~~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~~ 51 (203)
T 3b81_A 9 FNNKRTELANKIWDIFIANGYENTTLAFIINKLGISKGALYHY 51 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCchhHHHH
Confidence 45678888873 2345 89999999999999999974
No 325
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=83.99 E-value=0.63 Score=35.84 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=23.5
Q ss_pred HHcCCCHHHHhhhhccccchhhhHHH
Q psy1898 112 AAAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 112 ~~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
...|+|..++|+.+|||+++|++|.+
T Consensus 78 ~~~glTq~elA~~lGis~s~is~~E~ 103 (141)
T 3kxa_A 78 MKKGFTQSELATAAGLPQPYLSRIEN 103 (141)
T ss_dssp HHTTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34699999999999999999999975
No 326
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=83.93 E-value=0.88 Score=32.16 Aligned_cols=25 Identities=8% Similarity=0.131 Sum_probs=22.4
Q ss_pred HcCCCHHHHhhhhccccch----hhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGC----VSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sT----V~kwik 137 (230)
..|+|..++|+.+|||++| |++|.+
T Consensus 12 ~~glsq~~lA~~~gis~~~~~~~is~~E~ 40 (98)
T 3lfp_A 12 RAGISQEKLGVLAGIDEASASARMNQYEK 40 (98)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCcchhhhHHHHHHC
Confidence 4599999999999999999 888864
No 327
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=83.90 E-value=1 Score=33.92 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=33.6
Q ss_pred HHHHHHH-H-cCCCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 106 LKIVEMA-A-AGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 106 ~rIV~l~-~-~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
..|+..+ . .+.+..+||+.++++++||++.+++..+.|-+.
T Consensus 50 ~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~ 92 (153)
T 2pex_A 50 YLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVT 92 (153)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEe
Confidence 3444433 3 358999999999999999999999999999774
No 328
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=83.81 E-value=4.2 Score=28.98 Aligned_cols=83 Identities=11% Similarity=0.014 Sum_probs=52.3
Q ss_pred HcCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHhhCC
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPG-IFSWEIRDRLVKQDGI 191 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~~~P~-~t~~eI~~~L~~~~Gi 191 (230)
.+..+..++|+.+++|++++++..+++- |.. +. .-+...-.+....++...+. ++..+|+.. .|.
T Consensus 16 ~~~~~~~~lA~~~~~s~~~l~r~fk~~~--G~s-~~-------~~~~~~Rl~~A~~lL~~~~~~~si~~IA~~----~Gf 81 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQRSR--GYS-PM-------AFAKRVRLQHAHNLLSDGATPTTVTAAALS----CGF 81 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHHHT--SSC-HH-------HHHHHHHHHHHHHHHHSSSSCCCHHHHHHH----TTC
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHh--CcC-HH-------HHHHHHHHHHHHHHHHcCCCCCCHHHHHHH----hCC
Confidence 3458999999999999999999877532 321 10 00011112233444544433 788887763 687
Q ss_pred CCCCCCCCHhHHHHHHHcC-CCCCC
Q psy1898 192 CDKNSAPSVSSISRLLRGG-RRDDC 215 (230)
Q Consensus 192 ~~~~~~vS~sTV~R~Lr~~-g~~~~ 215 (230)
. +.+...|..++. |..|.
T Consensus 82 ~------~~s~F~r~Fk~~~G~tP~ 100 (108)
T 3mn2_A 82 S------NLGHFARDYRDMFGEKPS 100 (108)
T ss_dssp C------CHHHHHHHHHHHHSSCHH
T ss_pred C------CHHHHHHHHHHHHCcChH
Confidence 4 889999988764 55553
No 329
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=83.80 E-value=1.4 Score=33.16 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=38.4
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIE 167 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~ 167 (230)
.+.+..+||+.++++++||++.+++..+.|-+... +..+ ...-.+|+.-.+.+.
T Consensus 50 ~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 106 (155)
T 1s3j_A 50 GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFE 106 (155)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHH
Confidence 35899999999999999999999999999977322 1111 122356666554443
No 330
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=83.53 E-value=0.44 Score=40.16 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=36.6
Q ss_pred HHHHHHHHHHH---cCCCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 103 HIRLKIVEMAA---AGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 103 ~~R~rIV~l~~---~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
+.-.+|++++. .+++..+||+.++++++||++.++...+.|-+.
T Consensus 14 ~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~ 60 (257)
T 2g7u_A 14 ERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVA 60 (257)
T ss_dssp HHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 44456776654 258999999999999999999999999999774
No 331
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=83.50 E-value=1.6 Score=36.09 Aligned_cols=69 Identities=14% Similarity=0.145 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy1898 100 LPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKT 172 (230)
Q Consensus 100 ~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~~ 172 (230)
.+.+.=.+++..+.+..+.++||+.+++|.+||+.-+++.++.|.+.-.+ +.-.+|++-.+....+.+.
T Consensus 15 ~s~EdYLk~I~~L~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~GLV~~~~----~Gv~LTe~G~~~A~~i~~r 83 (200)
T 2p8t_A 15 YTVEDVLAVIFLLKEPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQ----RGHFLTLKGKEIRDKLLSM 83 (200)
T ss_dssp CCHHHHHHHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC------CEEECHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHcCCccHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeC----CCeEECHHHHHHHHHHHHH
Confidence 44566666666665669999999999999999999999999999875332 3567788877766666553
No 332
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=83.49 E-value=2.4 Score=33.54 Aligned_cols=56 Identities=11% Similarity=0.051 Sum_probs=40.1
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEEY 169 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~l 169 (230)
.+.+.++||+.++++++||++.+++..+.|-+... +..+ ...-.+|+.-.+.+...
T Consensus 56 ~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~ 114 (189)
T 3nqo_A 56 EETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTC 114 (189)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHH
Confidence 36999999999999999999999999999977321 1111 12235677655555443
No 333
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=83.39 E-value=1.1 Score=35.78 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=32.5
Q ss_pred CCcCCHHHHHHHHHH-----HHcC---CCHHHHhhhhccccchhhhHH
Q psy1898 97 GRPLPNHIRLKIVEM-----AAAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 97 g~~~s~~~R~rIV~l-----~~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
++.-..+.|.+|++. .+.| .|..+||+..|||++|+|...
T Consensus 22 ~r~~~~~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F 69 (217)
T 3hta_A 22 PRRHDPERRQRIIDAAIRVVGQKGIAGLSHRTVAAEADVPLGSTTYHF 69 (217)
T ss_dssp CGGGSHHHHHHHHHHHHHHHHHHTGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred cCCCchhHHHHHHHHHHHHHHHcCcccCCHHHHHHHcCCCcchhhhcC
Confidence 566677889999883 2345 899999999999999999864
No 334
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=83.34 E-value=1.1 Score=37.41 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=29.8
Q ss_pred CHHHHhhhhccccchhhhHHHHHhhhCCCCcCC
Q psy1898 117 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 149 (230)
Q Consensus 117 s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~ 149 (230)
|..++|++|+||+.||.+-++...+.|.+...+
T Consensus 36 se~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 68 (243)
T 2wv0_A 36 SEREYAEQFGISRMTVRQALSNLVNEGLLYRLK 68 (243)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEeC
Confidence 789999999999999999999999999885443
No 335
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=83.15 E-value=0.99 Score=38.54 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=37.5
Q ss_pred cCCHHHHHHHHHHHHcC-------C-CHHHHhhhhccccchhhhHHHHHhhhCCCCcC
Q psy1898 99 PLPNHIRLKIVEMAAAG-------V-RPCVISRQLRVSHGCVSKILNRYQETGSIRPG 148 (230)
Q Consensus 99 ~~s~~~R~rIV~l~~~G-------~-s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~ 148 (230)
++..++...+......| + |..++|++|+||+.||.+-++...+.|.+...
T Consensus 29 ~~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 86 (272)
T 3eet_A 29 PAYLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGR 86 (272)
T ss_dssp CHHHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CHHHHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 33345555555555443 3 88999999999999999999999999976433
No 336
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=83.06 E-value=0.85 Score=38.05 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=28.5
Q ss_pred CHHHHhhhhccccchhhhHHHHHhhhCCCCc
Q psy1898 117 RPCVISRQLRVSHGCVSKILNRYQETGSIRP 147 (230)
Q Consensus 117 s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p 147 (230)
|..++|++|+||+.||.+-++...+.|.+..
T Consensus 31 se~~La~~~~vSr~tvr~Al~~L~~~g~i~~ 61 (239)
T 3bwg_A 31 VLETLMAQFEVSKSTITKSLELLEQKGAIFQ 61 (239)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE
Confidence 7899999999999999999999999997743
No 337
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=83.06 E-value=0.45 Score=39.04 Aligned_cols=24 Identities=13% Similarity=0.329 Sum_probs=22.3
Q ss_pred cCCCHHHHhhhhccccchhhhHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
.|+|..++|+.+|||++||++|.+
T Consensus 29 ~g~t~~~lA~~~gis~~~i~~~~~ 52 (236)
T 3bdn_A 29 LGLSQESVADKMGMGQSGVGALFN 52 (236)
T ss_dssp TTCCSHHHHHHHTSCHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 489999999999999999999975
No 338
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=83.04 E-value=0.98 Score=34.89 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHc--CCCHHHHhhhh-----ccccchhhhHHHHHhhhCCC
Q psy1898 103 HIRLKIVEMAAA--GVRPCVISRQL-----RVSHGCVSKILNRYQETGSI 145 (230)
Q Consensus 103 ~~R~rIV~l~~~--G~s~~~IAr~l-----gVS~sTV~kwikRy~e~G~v 145 (230)
..|..|++.+.+ ..|..+|...+ .||.+||||-++.+.+.|.+
T Consensus 19 ~qR~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 19 PQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 678888876543 48888888877 69999999999999999966
No 339
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=82.94 E-value=0.87 Score=31.14 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=20.1
Q ss_pred CCHHHHhhhhccccchhhhHHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwik 137 (230)
.+..++|+.+|||++||++|.+
T Consensus 28 ~sq~~lA~~~gis~~~is~~E~ 49 (86)
T 2ofy_A 28 MSMVTVAFDAGISVETLRKIET 49 (86)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCHHHHHHHhCCCHHHHHHHHc
Confidence 3999999999999999999964
No 340
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=82.94 E-value=1.1 Score=35.44 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=34.0
Q ss_pred cCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 99 PLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 99 ~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
.++..+ .+|+.++.+|.|.++||+.+++|..||...+++-+
T Consensus 154 ~Lt~rE-~~vl~~l~~g~s~~~Ia~~l~is~~TV~~hi~~i~ 194 (215)
T 1a04_A 154 QLTPRE-RDILKLIAQGLPNKMIARRLDITESTVKVHVKHML 194 (215)
T ss_dssp GSCHHH-HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 355544 36888889999999999999999999999888754
No 341
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=82.92 E-value=2.8 Score=31.89 Aligned_cols=54 Identities=11% Similarity=0.123 Sum_probs=36.7
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCC-CC-CCCCCCCCHHHHHHHHHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV-IG-GSKPRVATPDVEKRIEEY 169 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~-~g-g~rpr~lt~~~~~~I~~l 169 (230)
++..+||+.++++++||++.+++..+.|-++... .. +...-.+|++-.+.+.+.
T Consensus 53 ~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~~~~~~ 108 (148)
T 4fx0_A 53 LTMSELAARIGVERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAALQKA 108 (148)
T ss_dssp -CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC-----------CCBCHHHHHHHHHH
T ss_pred cCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHHHHHHH
Confidence 7999999999999999999999999999773211 11 113346677766555444
No 342
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=82.87 E-value=1.1 Score=36.07 Aligned_cols=40 Identities=13% Similarity=0.112 Sum_probs=29.6
Q ss_pred CCcCCHHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 97 GRPLPNHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 97 g~~~s~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
.++-+.+.|.+|++. + +.| .|..+||+..|||++|+|+..
T Consensus 38 ~~~~~~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~~F 85 (236)
T 3q0w_A 38 ARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYF 85 (236)
T ss_dssp ----CHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred CCCChHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCcHHHHHHHC
Confidence 444566888888873 2 345 899999999999999999864
No 343
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=82.85 E-value=1 Score=34.89 Aligned_cols=36 Identities=6% Similarity=0.035 Sum_probs=28.3
Q ss_pred CHHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 101 PNHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 101 s~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
+.+.|.+|++. + +.| .|.++||+..|||++|+|+..
T Consensus 11 ~~~~r~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F 54 (195)
T 2iu5_A 11 SIITQKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYNYF 54 (195)
T ss_dssp TSHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGGTC
T ss_pred cHHHHHHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHHHHHc
Confidence 34677888773 2 345 899999999999999999853
No 344
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=82.75 E-value=0.61 Score=39.27 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcC--C-CHHHHhhhhccccchhhhHHHHHhhhCCCCc
Q psy1898 103 HIRLKIVEMAAAG--V-RPCVISRQLRVSHGCVSKILNRYQETGSIRP 147 (230)
Q Consensus 103 ~~R~rIV~l~~~G--~-s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p 147 (230)
+++.+|.. +..| + |..++|++|+||+.||.+-++.-.+.|.+..
T Consensus 22 ~l~~~I~~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~ 68 (248)
T 3f8m_A 22 ELDRMLDG-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER 68 (248)
T ss_dssp HHHHHHHH-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHhC-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 44555553 4445 4 7899999999999999999999999998755
No 345
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=82.74 E-value=2.5 Score=29.49 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHhC-C--CCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcCCCCCCC
Q psy1898 159 TPDVEKRIEEYKKTN-P--GIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGGRRDDCD 216 (230)
Q Consensus 159 t~~~~~~I~~l~~~~-P--~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~g~~~~~ 216 (230)
+..+...|.+++.+. | .++-.+|.+.|.+ .|+. +|..||-.+=...++.++.
T Consensus 18 ~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~-~Gi~-----IaRRTVaKYRe~l~Ip~s~ 72 (76)
T 2ahq_A 18 QGELMKLIKEIVENEDKRKPYSDQEIANILKE-KGFK-----VARRTVAKYREMLGIPSSR 72 (76)
T ss_dssp HHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTT-TSSC-----CCHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-cCCC-----ccHHHHHHHHHHcCCCchh
Confidence 456788888888753 3 3778899999987 7995 9999999999999998875
No 346
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=82.71 E-value=4.8 Score=31.78 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=49.5
Q ss_pred HHHHHHHHHHc-CCCHHHHhhhh--------ccccchhhhHHHHHhhhCCCCcCC--CCCCC---CCCCCHHHHHHHHHH
Q psy1898 104 IRLKIVEMAAA-GVRPCVISRQL--------RVSHGCVSKILNRYQETGSIRPGV--IGGSK---PRVATPDVEKRIEEY 169 (230)
Q Consensus 104 ~R~rIV~l~~~-G~s~~~IAr~l--------gVS~sTV~kwikRy~e~G~v~p~~--~gg~r---pr~lt~~~~~~I~~l 169 (230)
++.-|+.++.. .++.-+|++.+ ++|.++||.-+++..+.|-+.... .++++ --.+|+.-++.+..+
T Consensus 3 l~~~iL~lL~~~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~l~~~ 82 (179)
T 1yg2_A 3 LPHVILTVLSTRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEW 82 (179)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHHHHHHH
Confidence 45566666554 48899999988 699999999999999999774321 11222 246788888888888
Q ss_pred HHh
Q psy1898 170 KKT 172 (230)
Q Consensus 170 ~~~ 172 (230)
+.+
T Consensus 83 ~~~ 85 (179)
T 1yg2_A 83 FDQ 85 (179)
T ss_dssp HHS
T ss_pred HhC
Confidence 765
No 347
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=82.66 E-value=1.1 Score=36.01 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=34.3
Q ss_pred cCCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 99 PLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 99 ~~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
.++..+ .+|+.++.+|.|.++||+.+++|..||...+++-.
T Consensus 149 ~LT~rE-~~vL~~l~~g~s~~eIa~~l~is~~TV~~hi~~l~ 189 (225)
T 3c3w_A 149 GLTDQE-RTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLL 189 (225)
T ss_dssp TSCHHH-HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 356554 46888889999999999999999999999888754
No 348
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=82.61 E-value=0.96 Score=41.28 Aligned_cols=41 Identities=10% Similarity=0.016 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHH----cCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 100 LPNHIRLKIVEMAA----AGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 100 ~s~~~R~rIV~l~~----~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
+|...|.-+...+- +++|..+||..||||+.||..+..+..
T Consensus 361 L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~erVrqi~~rAl 405 (423)
T 2a6h_F 361 LSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKAL 405 (423)
T ss_dssp SCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 55566655555554 689999999999999999999988754
No 349
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=82.58 E-value=1.1 Score=34.70 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=28.1
Q ss_pred CHHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 101 PNHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 101 s~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
..+.|.+|++. + +.| .|..+||+..|||++|+|+..
T Consensus 12 ~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F 55 (220)
T 3lhq_A 12 ALETRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYWHF 55 (220)
T ss_dssp SHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCceeehhhc
Confidence 34667777762 2 345 899999999999999999863
No 350
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=82.52 E-value=3.6 Score=32.45 Aligned_cols=90 Identities=18% Similarity=0.245 Sum_probs=63.0
Q ss_pred ChhHHHHHHHHHhcCCChhhhhhhhccccccc----ccCCccc-------CCCcCCHHHHHHHHHHH---Hc-CCCHHHH
Q psy1898 57 PNHIRLKIVEMAAAGVRPCVISRQLRVSHGVN----QLGGVFI-------NGRPLPNHIRLKIVEMA---AA-GVRPCVI 121 (230)
Q Consensus 57 p~~~r~~I~e~~~~g~~~~~isr~lrvshg~~----~l~~~~~-------~g~~~s~~~R~rIV~l~---~~-G~s~~~I 121 (230)
|+++...|+++|..|++|++|.-.||-+||+- ..|...- -.-.+|.|+...|-.+. +. ....++.
T Consensus 32 ~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~glapeiPEDL~~LikKAv~lRkHLe~n~kD~ 111 (153)
T 2xzm_O 32 PSTVVDLSVKLAKKGLTPSQIGVILRDQHGIPQVRFLTGQKILRILKKNGCAPQLPEDLYFLIKKALSIRKHLEKNRKDK 111 (153)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHHHSSCHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHCCCCHHHhhhHHhhcCCCCCeeeeccchHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHcccch
Confidence 58899999999999999999999999999984 2222111 23457888876665422 11 1233344
Q ss_pred h--hhhccccchhhhHHHHHhhhCCCC
Q psy1898 122 S--RQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 122 A--r~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
- ..|-.-.+-|++..+-|+.+|.+-
T Consensus 112 ~sK~~L~LiESkI~RL~rYYk~~~~LP 138 (153)
T 2xzm_O 112 DSKYRLILVESRIHRLSRYYKLNQKLP 138 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 3 345567888999999999888764
No 351
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=82.49 E-value=1 Score=34.09 Aligned_cols=35 Identities=11% Similarity=0.245 Sum_probs=27.6
Q ss_pred HHHHHHHHHHH-----HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 102 NHIRLKIVEMA-----AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 102 ~~~R~rIV~l~-----~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
.+.|.+|++.. +.| .|..+||+..|||++|+|+..
T Consensus 7 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F 49 (188)
T 3qkx_A 7 TDLAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYLYF 49 (188)
T ss_dssp HHHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHHc
Confidence 46677777632 345 999999999999999999763
No 352
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=82.33 E-value=0.71 Score=36.27 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=29.1
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
.+..+||..+|+|+.||++.++++++.|.+.
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 195 (207)
T 2oz6_A 165 ITRQEIGRIVGCSREMVGRVLKSLEEQGLVH 195 (207)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 6889999999999999999999999999874
No 353
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=82.30 E-value=1.6 Score=32.89 Aligned_cols=65 Identities=8% Similarity=0.064 Sum_probs=43.6
Q ss_pred HHHHHHHH--cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHHHH
Q psy1898 106 LKIVEMAA--AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEEYK 170 (230)
Q Consensus 106 ~rIV~l~~--~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~l~ 170 (230)
..|+..+. .+.+..+||+.++++++||++.+++..+.|-+... +..+ ..--.+|+.-.+.+....
T Consensus 46 ~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 115 (155)
T 3cdh_A 46 WRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESLV 115 (155)
T ss_dssp HHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHHHH
Confidence 34554443 35899999999999999999999999999977422 1111 122356776665555443
No 354
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=82.21 E-value=0.89 Score=35.25 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=27.1
Q ss_pred HHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 103 HIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 103 ~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
+.|.+|++. + +.| .|..+||+..|||++|+|...
T Consensus 9 ~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F 50 (193)
T 2dg8_A 9 QRRERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMTYHF 50 (193)
T ss_dssp THHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCchhhheeC
Confidence 667777762 2 345 899999999999999999763
No 355
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=82.21 E-value=1.6 Score=32.11 Aligned_cols=40 Identities=33% Similarity=0.401 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCC----CCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcCCCC
Q psy1898 163 EKRIEEYKKTNP----GIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGGRRD 213 (230)
Q Consensus 163 ~~~I~~l~~~~P----~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~g~~ 213 (230)
++.|.+++.++| ..+..++++.. + ||.+||.|+.++.|+.
T Consensus 19 e~~ia~yil~~~~~~~~~si~elA~~~----~-------vS~aTv~Rf~kkLGf~ 62 (107)
T 3iwf_A 19 EKKIAQFILNYPHKVVNMTSQEIANQL----E-------TSSTSIIRLSKKVTPG 62 (107)
T ss_dssp HHHHHHHHHHCHHHHTTCCHHHHHHHH----T-------SCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhCHHHHHHCCHHHHHHHH----C-------CCHHHHHHHHHHhCCC
Confidence 456666777776 57787777643 4 5999999999999986
No 356
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=82.21 E-value=1.9 Score=28.81 Aligned_cols=38 Identities=8% Similarity=0.147 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC
Q psy1898 162 VEKRIEEYKKTN-PGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGG 210 (230)
Q Consensus 162 ~~~~I~~l~~~~-P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~ 210 (230)
.++.|.+++.++ +.++..+|++.| | +|.+||++.|+.+
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~l----g-------lsr~tv~~~l~~L 49 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKC----Q-------VPKKTLNQVLYRL 49 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHH----C-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHH----C-------cCHHHHHHHHHHH
Confidence 355666666654 468898888765 4 4999999987764
No 357
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=82.17 E-value=1.5 Score=32.47 Aligned_cols=30 Identities=7% Similarity=-0.046 Sum_probs=24.6
Q ss_pred HHHHHH-cCCCHHHHhhhhccccchhhhHHH
Q psy1898 108 IVEMAA-AGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 108 IV~l~~-~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
+-.+.+ .|+|..++|+.+|||+++|++|.+
T Consensus 12 Lr~~R~~~glSq~eLA~~~gis~~~is~iE~ 42 (112)
T 2wus_R 12 FRKKREERRITLLDASLFTNINPSKLKRIEE 42 (112)
T ss_dssp HHHHHHTTTCCHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 333443 489999999999999999999964
No 358
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=82.07 E-value=1.4 Score=32.85 Aligned_cols=65 Identities=11% Similarity=0.128 Sum_probs=42.7
Q ss_pred HHHHHHH-HcCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHHHH
Q psy1898 106 LKIVEMA-AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEEYK 170 (230)
Q Consensus 106 ~rIV~l~-~~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~l~ 170 (230)
..|+..+ ..+.+..+||+.++++++||++.+++..+.|-+... +..+ ..--.+|++-.+.+....
T Consensus 40 ~~iL~~l~~~~~~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 108 (144)
T 3f3x_A 40 FSILKATSEEPRSMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEAN 108 (144)
T ss_dssp HHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHHHH
Confidence 3444433 333399999999999999999999999999977322 1111 112356776655554433
No 359
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=81.94 E-value=1.2 Score=33.83 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=27.8
Q ss_pred HHHHHHHHH----HH-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 102 NHIRLKIVE----MA-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 102 ~~~R~rIV~----l~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
.+.|.+|++ ++ +.| .|..+||+..|||++|+|+..
T Consensus 7 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F 49 (194)
T 2g7s_A 7 QSKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHF 49 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHHHHHc
Confidence 467777776 22 345 899999999999999999863
No 360
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=81.94 E-value=1.2 Score=34.92 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhH
Q psy1898 100 LPNHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKI 135 (230)
Q Consensus 100 ~s~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kw 135 (230)
.+.+.|.+|++. + +.| .|..+||+..|||++|+|+.
T Consensus 6 ~~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tlY~~ 49 (203)
T 3cdl_A 6 LTDQKRESIVQAAIAEFGDRGFEITSMDRIAARAEVSKRTVYNH 49 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHTT
T ss_pred cchhHHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHHHH
Confidence 456788888873 2 345 89999999999999999985
No 361
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=81.93 E-value=1.4 Score=31.62 Aligned_cols=86 Identities=16% Similarity=0.113 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHhCC-CCCHHH
Q psy1898 102 NHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNP-GIFSWE 180 (230)
Q Consensus 102 ~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~~~P-~~t~~e 180 (230)
.++=..|+.....|.+.++||..+++|.+++.+.++...+.|-+.... + .-.+|+.-.+.+..+..-.- -....+
T Consensus 7 ~eIi~~IL~~i~~~~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~~--~--~~~LT~kG~~~l~~l~~~~~~l~~l~~ 82 (95)
T 1r7j_A 7 LEIIQAILEACKSGSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEG--K--QYMLTKKGEELLEDIRKFNEMRKNMDQ 82 (95)
T ss_dssp HHHHHHHHHHHTTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET--T--EEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEC--C--eeEEChhHHHHHHHHHHHHHHHHHHHH
Confidence 355566676666679999999999999999999999999999885432 1 26788877765544432111 113445
Q ss_pred HHHHHHHhhCC
Q psy1898 181 IRDRLVKQDGI 191 (230)
Q Consensus 181 I~~~L~~~~Gi 191 (230)
+.+.|.+..|+
T Consensus 83 ~e~~l~~~l~i 93 (95)
T 1r7j_A 83 LKEKINSVLSI 93 (95)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHcCC
Confidence 55555554454
No 362
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=81.74 E-value=0.75 Score=35.22 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=19.5
Q ss_pred CCHHHHhhhhccccchhhhHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwi 136 (230)
.|..+||+..|||++|+|+..
T Consensus 23 ~ti~~Ia~~agvs~~t~Y~~F 43 (194)
T 3bqz_B 23 TTTGEIVKLSESSKGNLYYHF 43 (194)
T ss_dssp CCHHHHHHHTTCCHHHHHHHT
T ss_pred CCHHHHHHHhCCCchhHHHhC
Confidence 899999999999999999863
No 363
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=81.72 E-value=0.76 Score=36.15 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=29.0
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
.+..+||..+|+|+.||++.++++++.|.+.
T Consensus 168 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 168 ITRQEIGQIVGCSRETVGRILKMLEDQNLIS 198 (210)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 5789999999999999999999999999774
No 364
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=81.61 E-value=1.1 Score=35.29 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=29.4
Q ss_pred CHHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHHH
Q psy1898 101 PNHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 101 s~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwik 137 (230)
+.+.|.+|++. + +.| .|..+||+..|||++|+|+...
T Consensus 9 ~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~ 53 (210)
T 2wui_A 9 SQKTRDGILDAAERVFLEKGVGTTAMADLADAAGVSRGAVYGHYK 53 (210)
T ss_dssp CTHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHHcC
Confidence 45678888873 2 345 8999999999999999998743
No 365
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=81.61 E-value=3.3 Score=29.57 Aligned_cols=81 Identities=7% Similarity=0.009 Sum_probs=50.7
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCC
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSWEIRDRLVKQDGICD 193 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~~~P~~t~~eI~~~L~~~~Gi~~ 193 (230)
...+..++|+.+++|++++.+..+++ .|.. +.. -+...-.+....++ .+++.+..+|+.. .|..
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~--~G~s-~~~-------~~~~~Rl~~A~~lL-~~~~~si~~IA~~----~Gf~- 82 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQ--LGIS-VLS-------WREDQRISQAKLLL-STTRMPIATVGRN----VGFD- 82 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHH--HSSC-HHH-------HHHHHHHHHHHHHH-HHCCCCHHHHHHH----TTCC-
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH--HCcC-HHH-------HHHHHHHHHHHHHH-HcCCCCHHHHHHH----hCCC-
Confidence 35899999999999999999887753 2421 110 00111112223334 3456888877753 6885
Q ss_pred CCCCCCHhHHHHHHHcC-CCCCC
Q psy1898 194 KNSAPSVSSISRLLRGG-RRDDC 215 (230)
Q Consensus 194 ~~~~vS~sTV~R~Lr~~-g~~~~ 215 (230)
+.+...|..++. |..|.
T Consensus 83 -----~~s~F~r~Fk~~~G~tP~ 100 (107)
T 2k9s_A 83 -----DQLYFSRVFKKCTGASPS 100 (107)
T ss_dssp -----CHHHHHHHHHHHHSSCHH
T ss_pred -----CHHHHHHHHHHHHCcCHH
Confidence 888988888875 55543
No 366
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=81.57 E-value=0.88 Score=36.66 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=22.7
Q ss_pred HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
+.|+|..++|+.+|||++|+++|.+
T Consensus 101 ~~glTQ~elA~~LGvsr~tis~yE~ 125 (170)
T 2auw_A 101 RNNLSLTTAAEALGISRRMVSYYRT 125 (170)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4589999999999999999999964
No 367
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=81.56 E-value=1.4 Score=34.46 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=28.5
Q ss_pred HHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHHH
Q psy1898 102 NHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 102 ~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwik 137 (230)
.+.|.+|++. + +.| .|..+||+..|||++|+|+...
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~ 53 (210)
T 2xdn_A 10 QETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFN 53 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCTTHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHCCChHHHHHHhC
Confidence 4677888873 2 335 9999999999999999998743
No 368
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=81.56 E-value=1.3 Score=33.65 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=42.2
Q ss_pred HHHHHHH-H--cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHH
Q psy1898 106 LKIVEMA-A--AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEE 168 (230)
Q Consensus 106 ~rIV~l~-~--~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~ 168 (230)
..|+..+ . .+.+..+||+.++++++||++.+++..+.|-+... +..+ ...-.+|+.-.+.+..
T Consensus 50 ~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 118 (160)
T 3boq_A 50 FDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQ 118 (160)
T ss_dssp HHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHH
Confidence 3455444 2 36999999999999999999999999999977422 1111 1223567765555443
No 369
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=81.42 E-value=0.81 Score=35.90 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=29.6
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCc
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 147 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p 147 (230)
.+..+||..+|+|+.||++.++++++.|.+.-
T Consensus 140 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~ 171 (195)
T 3b02_A 140 VSHEEIADATASIRESVSKVLADLRREGLIAT 171 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 68899999999999999999999999998753
No 370
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=81.36 E-value=0.9 Score=34.75 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=25.7
Q ss_pred HHHHHHH----HH-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 104 IRLKIVE----MA-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 104 ~R~rIV~----l~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
.|.+|++ ++ +.| .|..+||+..|||++|+|+.-
T Consensus 3 tr~~Il~aA~~lf~~~Gy~~~s~~~Ia~~agvskgtlY~~F 43 (179)
T 2eh3_A 3 TKERILEVSKELFFEKGYQGTSVEEIVKRANLSKGAFYFHF 43 (179)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCcHHHHHHc
Confidence 4666665 22 345 899999999999999999863
No 371
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=81.14 E-value=1.3 Score=32.25 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=31.2
Q ss_pred HcCCCHHHHhhhhc----cccchhhhHHHHHhhhCCCCc
Q psy1898 113 AAGVRPCVISRQLR----VSHGCVSKILNRYQETGSIRP 147 (230)
Q Consensus 113 ~~G~s~~~IAr~lg----VS~sTV~kwikRy~e~G~v~p 147 (230)
..+.+..+||+.++ ++++||++.+++..+.|-+..
T Consensus 22 ~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r 60 (123)
T 1okr_A 22 KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDR 60 (123)
T ss_dssp HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEE
Confidence 34699999999999 889999999999999998743
No 372
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=81.07 E-value=1 Score=37.03 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=29.8
Q ss_pred CHHHHhhhhccccchhhhHHHHHhhhCCCCcCC
Q psy1898 117 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 149 (230)
Q Consensus 117 s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~ 149 (230)
+-.++|++||||++||..=+++-...|.+...+
T Consensus 33 sE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~ 65 (239)
T 1hw1_A 33 AERELSELIGVTRTTLREVLQRLARDGWLTIQH 65 (239)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEec
Confidence 789999999999999999999999999875444
No 373
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=81.07 E-value=0.31 Score=37.99 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=0.0
Q ss_pred HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
..|+|..++|+.+|||++||++|.+
T Consensus 12 ~~gltq~elA~~lgis~~~vs~~e~ 36 (158)
T 2p5t_A 12 THDLTQLEFARIVGISRNSLSRYEN 36 (158)
T ss_dssp -------------------------
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4589999999999999999999943
No 374
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=81.04 E-value=1.3 Score=34.05 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=28.0
Q ss_pred CHHHHHHHHHH-----HHcC---CCHHHHhhhhccccchhhhHH
Q psy1898 101 PNHIRLKIVEM-----AAAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 101 s~~~R~rIV~l-----~~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
..+.|.+|++. .+.| .|..+||+..|||++|+|+..
T Consensus 10 ~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 53 (202)
T 3lwj_A 10 NKERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYNYF 53 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchhHHHHc
Confidence 34677777762 2345 899999999999999999853
No 375
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=81.03 E-value=0.89 Score=34.86 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcC-CCHHHHhhhh-ccccchhhhHHHHHhhhCCCC
Q psy1898 104 IRLKIVEMAAAG-VRPCVISRQL-RVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 104 ~R~rIV~l~~~G-~s~~~IAr~l-gVS~sTV~kwikRy~e~G~v~ 146 (230)
.+..|+..+..| .+..++++.+ +||.+|+++-+++..+.|.+.
T Consensus 27 W~l~IL~~L~~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~ 71 (131)
T 4a5n_A 27 WKGILFYHMIDGKKRFNEFRRICPSITQRMLTLQLRELEADGIVH 71 (131)
T ss_dssp SHHHHHHHHTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHhcCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEE
Confidence 355666655454 9999999999 999999999999999999874
No 376
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=80.99 E-value=0.84 Score=35.96 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=29.8
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCc
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 147 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p 147 (230)
++..+||..+|+|+.||++.++++++.|.+.-
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~ 178 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELAREGYIRS 178 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 68899999999999999999999999998753
No 377
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=80.96 E-value=1.4 Score=34.20 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=27.6
Q ss_pred HHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 102 NHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 102 ~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
.+.|.+|++. + +.| .|..+||+..|||++|+|+..
T Consensus 7 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F 49 (199)
T 2o7t_A 7 LKRREHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRNF 49 (199)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHCCCccCCHHHHHHHhCCCHHHHHHHc
Confidence 3567777762 2 345 899999999999999999864
No 378
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=80.90 E-value=1.4 Score=34.10 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 100 LPNHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 100 ~s~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
-+.+.|.+|++. + +.| .|..+||+..|||++|+|+..
T Consensus 11 ~~~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F 55 (212)
T 3knw_A 11 KSEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYF 55 (212)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred cchhhHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHHHHC
Confidence 455788888873 2 345 899999999999999999863
No 379
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=80.88 E-value=0.78 Score=36.56 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=29.0
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
.+..+||..+|+|+.||++.++++++.|.+.
T Consensus 179 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 209 (227)
T 3dkw_A 179 VAKQLVAGHLSIQPETFSRIMHRLGDEGIIH 209 (227)
T ss_dssp SCTHHHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCcEE
Confidence 5789999999999999999999999999874
No 380
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=80.82 E-value=1 Score=35.55 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=30.0
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCc
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 147 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p 147 (230)
++..+||+.++||+..|.++++.-++.|.+..
T Consensus 29 ~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s 60 (162)
T 3k69_A 29 VASRELAQSLHLNPVMIRNILSVLHKHGYLTG 60 (162)
T ss_dssp BCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 79999999999999999999999999998754
No 381
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=80.75 E-value=0.86 Score=36.00 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=29.5
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
.+..+||..+|+|+.||++.++++++.|.+.
T Consensus 164 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 194 (216)
T 4ev0_A 164 IRHHELAALAGTSRETVSRVLHALAEEGVVR 194 (216)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 6899999999999999999999999999885
No 382
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=80.73 E-value=1 Score=35.69 Aligned_cols=32 Identities=16% Similarity=0.359 Sum_probs=30.1
Q ss_pred CCCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 115 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 115 G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
..+..+||..+|+|+.||++.++++++.|.+.
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 200 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVK 200 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 47999999999999999999999999999875
No 383
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=80.63 E-value=1.4 Score=34.11 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=28.1
Q ss_pred HHHHHHHHHH-----HHcC---CCHHHHhhhhccccchhhhHH
Q psy1898 102 NHIRLKIVEM-----AAAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 102 ~~~R~rIV~l-----~~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
.+.|.+|++. .+.| .|..+||+..|||++|+|+..
T Consensus 17 ~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F 59 (212)
T 1pb6_A 17 SAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYF 59 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHCCChhHHHHhC
Confidence 4677888872 2345 899999999999999999873
No 384
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=80.62 E-value=0.93 Score=34.19 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=27.0
Q ss_pred HHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 103 HIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 103 ~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
+.|.+|++. + +.| .|..+||+..|||++|+|+..
T Consensus 4 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 45 (170)
T 3egq_A 4 DQSVRIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFYHF 45 (170)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHHHc
Confidence 567777763 2 234 899999999999999999874
No 385
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=80.57 E-value=0.97 Score=35.46 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=27.4
Q ss_pred CHHHHHHHHHH-----HHcC---CCHHHHhhhhccccchhhhHH
Q psy1898 101 PNHIRLKIVEM-----AAAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 101 s~~~R~rIV~l-----~~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
+...|.+|++. .+.| .|..+||+..|||++|+|+..
T Consensus 7 ~~~tr~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~gtlY~~F 50 (203)
T 2np5_A 7 SSTSPERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQHHF 50 (203)
T ss_dssp --CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred cchhHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCHHHHHHHc
Confidence 44567778773 2345 899999999999999999864
No 386
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=80.56 E-value=0.87 Score=36.35 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=29.1
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
.+..+||..+|+|+.||++.++++++.|.+.
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 218 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQADGLLH 218 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 5889999999999999999999999999874
No 387
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=80.54 E-value=2.9 Score=28.51 Aligned_cols=36 Identities=19% Similarity=0.053 Sum_probs=27.9
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC
Q psy1898 164 KRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGG 210 (230)
Q Consensus 164 ~~I~~l~~~~P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~ 210 (230)
+.|..++.+++..+..||++.+ | +|.+||++.|+.+
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~l----g-------vs~~tv~r~L~~L 38 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEAL----A-------VTDYQARYYLLLL 38 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHH----T-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHH----C-------cCHHHHHHHHHHH
Confidence 4566777777779999998866 4 4999999987764
No 388
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=80.54 E-value=1.1 Score=34.55 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=37.5
Q ss_pred CCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHHHH
Q psy1898 115 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEEYK 170 (230)
Q Consensus 115 G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~l~ 170 (230)
+.+..+||+.++++++||++.+++..+.|.+... +..+ ...-.+|+.-.+.+....
T Consensus 62 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 120 (168)
T 3u2r_A 62 GMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKDLE 120 (168)
T ss_dssp CEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHHHH
Confidence 7999999999999999999999999999977422 1111 122356776665555444
No 389
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=80.50 E-value=1.4 Score=34.29 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=27.1
Q ss_pred HHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 103 HIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 103 ~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
+.|.+|++. + +.| .|..+||+..|||++|+|+..
T Consensus 9 ~~r~~Il~aA~~lf~~~G~~~~t~~~Ia~~Agvs~gt~Y~yF 50 (204)
T 3anp_C 9 RRRERIFRAAMELFRNRGFQETTATEIAKAAHVSRGTFFNYY 50 (204)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCchHHHHHHc
Confidence 567777762 2 345 899999999999999999864
No 390
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=80.50 E-value=1 Score=35.53 Aligned_cols=37 Identities=14% Similarity=0.248 Sum_probs=29.0
Q ss_pred CHHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHHH
Q psy1898 101 PNHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 101 s~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwik 137 (230)
..+.|.+|++. + +.| .|..+||+..|||++|+|+...
T Consensus 20 ~~~~r~~Il~AA~~lf~e~G~~~~s~~~IA~~AGVsk~tlY~~F~ 64 (207)
T 3bjb_A 20 QRARHVRMLEAAIELATEKELARVQMHEVAKRAGVAIGTLYRYFP 64 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHCC
Confidence 34677888872 2 345 8999999999999999998743
No 391
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=80.45 E-value=1.1 Score=34.11 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=27.4
Q ss_pred HHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 102 NHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 102 ~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
.+.|.+|++. + +.| .|..+||+..|||++|+|+..
T Consensus 7 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 49 (195)
T 3pas_A 7 DSKRIAFLEATVREVADHGFSATSVGKIAKAAGLSPATLYIYY 49 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHcChHhcCHHHHHHHhCCCchHHHHHc
Confidence 3567777762 2 334 999999999999999999863
No 392
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=80.43 E-value=1.5 Score=33.62 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=28.5
Q ss_pred CHHHHHHHHHH-----HHcC---CCHHHHhhhhccccchhhhHH
Q psy1898 101 PNHIRLKIVEM-----AAAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 101 s~~~R~rIV~l-----~~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
..+.|.+|++. .+.| .|..+||+..|||++|+|+..
T Consensus 6 ~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~Agvs~~tly~~F 49 (194)
T 3dpj_A 6 QAQTRDQIVAAADELFYRQGFAQTSFVDISAAVGISRGNFYYHF 49 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHHHc
Confidence 35777888873 2345 899999999999999999864
No 393
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=80.36 E-value=0.73 Score=34.16 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCC----CCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcCCCC
Q psy1898 163 EKRIEEYKKTNP----GIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGGRRD 213 (230)
Q Consensus 163 ~~~I~~l~~~~P----~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~g~~ 213 (230)
++.|.+++.++| ..+..++++. .+ ||.+||.|+.++.|+.
T Consensus 23 e~~ia~yil~~~~~~~~~si~elA~~----~~-------vS~aTv~Rf~kklG~~ 66 (111)
T 2o3f_A 23 ERKLADYILAHPHXAIESTVNEISAL----AN-------SSDAAVIRLCXSLGLK 66 (111)
T ss_dssp HHHHHHHHHHCHHHHHTCCHHHHHHH----TT-------CCHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHChHHHHhcCHHHHHHH----HC-------CCHHHHHHHHHHcCCC
Confidence 456777777776 4777777764 44 5999999999999987
No 394
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=80.36 E-value=0.65 Score=34.73 Aligned_cols=55 Identities=5% Similarity=0.027 Sum_probs=38.3
Q ss_pred cCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcC--CCCC-CCCCCCCHHHHHHHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG--VIGG-SKPRVATPDVEKRIEE 168 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~--~~gg-~rpr~lt~~~~~~I~~ 168 (230)
.+.+..+||+.++++++||++.+++..+.|-+... +..+ ..--.+|++-.+.+..
T Consensus 49 ~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 106 (140)
T 3hsr_A 49 EKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSP 106 (140)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHH
Confidence 35899999999999999999999999999977322 1111 1223467765554443
No 395
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=80.30 E-value=0.34 Score=41.47 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=0.0
Q ss_pred CCHHHHhhhhccccchhhhHHHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNR 138 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikR 138 (230)
.|.++||+.+|||++||++.++.
T Consensus 6 ~ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 6 TTIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHHCCCHHHHHHHHcC
Confidence 58999999999999999999974
No 396
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=80.20 E-value=1 Score=34.51 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=27.5
Q ss_pred HHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHHH
Q psy1898 103 HIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 103 ~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwik 137 (230)
+.|.+|++. + +.| .|..+||+..|||++|+|+...
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 50 (206)
T 3dew_A 8 DCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFG 50 (206)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHHHHHcC
Confidence 567777762 2 345 9999999999999999998743
No 397
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=80.12 E-value=12 Score=31.21 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=24.0
Q ss_pred HHHcCCCHHHHhhhhccccchhhhHHH
Q psy1898 111 MAAAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 111 l~~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
+...|++..++|+.+|||+++|++|++
T Consensus 40 r~~~gltQ~evA~~tGISqS~ISq~e~ 66 (221)
T 2h8r_A 40 MQQHNIPQREVVDVTGLNQSHLSQHLN 66 (221)
T ss_dssp HHHHTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHHh
Confidence 455699999999999999999999986
No 398
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=80.10 E-value=0.91 Score=36.20 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=29.8
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCc
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 147 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p 147 (230)
.+..+||..+|+|+.||++.++++++.|.+.-
T Consensus 168 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 199 (220)
T 2fmy_A 168 LNTEEIALMLGTTRQTVSVLLNDFKKMGILER 199 (220)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEE
Confidence 78999999999999999999999999998753
No 399
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=80.04 E-value=1.5 Score=33.56 Aligned_cols=34 Identities=9% Similarity=0.054 Sum_probs=26.8
Q ss_pred HHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhH
Q psy1898 102 NHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKI 135 (230)
Q Consensus 102 ~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kw 135 (230)
.+.|.+|++. + +.| .|..+||+..|||++|+|+.
T Consensus 13 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 54 (203)
T 3f1b_A 13 AVREQQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYLY 54 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHHH
Confidence 3556777762 2 335 89999999999999999986
No 400
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=80.02 E-value=1.1 Score=35.93 Aligned_cols=32 Identities=22% Similarity=0.158 Sum_probs=29.8
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCc
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 147 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p 147 (230)
.+..+||..+|+|+.||++.++++++.|.+.-
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~ 195 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYISR 195 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEE
Confidence 68999999999999999999999999998754
No 401
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=79.97 E-value=1 Score=36.37 Aligned_cols=31 Identities=32% Similarity=0.339 Sum_probs=29.4
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
.+..+||..+|+|+.||++.++++++.|.+.
T Consensus 187 ~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~ 217 (232)
T 1zyb_A 187 VKMDDLARCLDDTRLNISKTLNELQDNGLIE 217 (232)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSCE
T ss_pred CCHHHHHHHhCCChhHHHHHHHHHHHCCCEE
Confidence 6899999999999999999999999999875
No 402
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=79.91 E-value=1.5 Score=34.09 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=27.2
Q ss_pred HHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 103 HIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 103 ~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
+.|.+|++. + +.| .|..+||+..|||++|+|+..
T Consensus 31 ~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F 72 (218)
T 3dcf_A 31 DRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYYF 72 (218)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHHHc
Confidence 667777762 2 345 899999999999999999864
No 403
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=79.89 E-value=1.7 Score=30.31 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC
Q psy1898 163 EKRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGG 210 (230)
Q Consensus 163 ~~~I~~l~~~~P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~ 210 (230)
...|.+++.++...+..||.+.| + ||..||.|-|..+
T Consensus 4 L~~Il~~L~~~g~vsv~eLa~~l----~-------VS~~TIRrdL~~L 40 (78)
T 1xn7_A 4 LIQVRDLLALRGRMEAAQISQTL----N-------TPQPMINAMLQQL 40 (78)
T ss_dssp HHHHHHHHHHSCSBCHHHHHHHT----T-------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHH----C-------cCHHHHHHHHHHH
Confidence 35788888899999999988865 3 5999999998764
No 404
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=79.88 E-value=0.95 Score=36.20 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=29.7
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCc
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 147 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p 147 (230)
.+..+||..+|+|+.||++.++++++.|.+.-
T Consensus 178 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 209 (227)
T 3d0s_A 178 LTQEEIAQLVGASRETVNKALADFAHRGWIRL 209 (227)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe
Confidence 68999999999999999999999999998753
No 405
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=79.87 E-value=1.6 Score=33.59 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=25.5
Q ss_pred HHHHHHH----HH-HcC---CCHHHHhhhhccccchhhhH
Q psy1898 104 IRLKIVE----MA-AAG---VRPCVISRQLRVSHGCVSKI 135 (230)
Q Consensus 104 ~R~rIV~----l~-~~G---~s~~~IAr~lgVS~sTV~kw 135 (230)
.|.+|++ ++ +.| .|..+||+..|||++|+|+.
T Consensus 8 tRe~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~ 47 (178)
T 4hku_A 8 SQEIILNMAEKIIYEKGMEKTTLYDIASNLNVTHAALYKH 47 (178)
T ss_dssp CHHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGGGGT
T ss_pred HHHHHHHHHHHHHHHhCcccccHHHHHHHhCcCHhHHHHH
Confidence 4667776 22 335 89999999999999999985
No 406
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=79.86 E-value=1.2 Score=31.48 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=29.9
Q ss_pred CCCCCChhHHHHHHHHHh-c-CCChhhhhhhhccccccc
Q psy1898 52 NGRPLPNHIRLKIVEMAA-A-GVRPCVISRQLRVSHGVN 88 (230)
Q Consensus 52 ~g~plp~~~r~~I~e~~~-~-g~~~~~isr~lrvshg~~ 88 (230)
..+..+.++|.+||+++. . |.+..++++.++|+..+.
T Consensus 2 ~r~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl 40 (97)
T 2jn6_A 2 PTKTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTL 40 (97)
T ss_dssp CCCCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHH
Confidence 334456999999999996 4 889999999999876554
No 407
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=79.76 E-value=1.3 Score=34.86 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=28.4
Q ss_pred CHHHHHHHHH----HH-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 101 PNHIRLKIVE----MA-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 101 s~~~R~rIV~----l~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
..+.|.+|++ ++ +.| .|..+||+..|||++|+|+..
T Consensus 26 ~~~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~~F 69 (215)
T 2qko_A 26 NPERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASNYF 69 (215)
T ss_dssp -CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHhChhhccHHHHHHHcCCCcchHHHhC
Confidence 4477888887 33 345 899999999999999999874
No 408
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=79.73 E-value=1.2 Score=34.52 Aligned_cols=34 Identities=21% Similarity=0.109 Sum_probs=27.4
Q ss_pred HHHHHHHHHH-----HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 103 HIRLKIVEMA-----AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 103 ~~R~rIV~l~-----~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
+.|.+|++.. +.| .|..+||+..|||++|+|+..
T Consensus 18 ~~R~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F 59 (212)
T 3loc_A 18 AKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYF 59 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHhhhC
Confidence 5677888732 334 999999999999999999864
No 409
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=79.68 E-value=1.5 Score=34.25 Aligned_cols=36 Identities=22% Similarity=0.423 Sum_probs=28.8
Q ss_pred CHHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 101 PNHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 101 s~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
..+.|.+|++. + +.| .|.++||+..|||++|+|..-
T Consensus 10 ~~~tr~~Il~aA~~l~~e~G~~~~s~~~IA~~agvs~~t~Y~hF 53 (198)
T 3cjd_A 10 KAALREKLIDLAEAQIEAEGLASLRARELARQADCAVGAIYTHF 53 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhCChhhcCHHHHHHHhCCCccHHHHHh
Confidence 45778888873 2 335 899999999999999999864
No 410
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=79.64 E-value=0.83 Score=35.03 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=27.7
Q ss_pred HHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHHH
Q psy1898 102 NHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 102 ~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwik 137 (230)
.+.|.+|++. + +.| .|..+||+..|||++|+|+...
T Consensus 13 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~ 56 (191)
T 4aci_A 13 TNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHHFG 56 (191)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCchHHHHHCC
Confidence 4567777762 2 334 9999999999999999998754
No 411
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=79.59 E-value=1.2 Score=34.44 Aligned_cols=36 Identities=25% Similarity=0.208 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHH-----HcC---CCHHHHhhhhccccchhhhH
Q psy1898 100 LPNHIRLKIVEMA-----AAG---VRPCVISRQLRVSHGCVSKI 135 (230)
Q Consensus 100 ~s~~~R~rIV~l~-----~~G---~s~~~IAr~lgVS~sTV~kw 135 (230)
...+.|.+|++.. +.| .|..+||+..|||++|+|+.
T Consensus 13 ~~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 56 (211)
T 3him_A 13 GTSKAAARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAVYPH 56 (211)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCcChhhhc
Confidence 3447788888732 345 89999999999999999976
No 412
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=79.56 E-value=0.98 Score=36.21 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=29.8
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCc
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 147 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p 147 (230)
.+..+||..+|+|+.||++.++++++.|.+.-
T Consensus 176 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~ 207 (231)
T 3e97_A 176 LGTQDIMARTSSSRETVSRVLKRLEAHNILEV 207 (231)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe
Confidence 68999999999999999999999999998753
No 413
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=79.54 E-value=2.8 Score=33.95 Aligned_cols=60 Identities=10% Similarity=-0.013 Sum_probs=43.4
Q ss_pred HcCCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCC--CCC-CCCCCCCHHHHHHHHHHHHh
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV--IGG-SKPRVATPDVEKRIEEYKKT 172 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~--~gg-~rpr~lt~~~~~~I~~l~~~ 172 (230)
..+.+..+||+.++++++||++.+++..+.|-+...+ ..+ ..--.+|+.-.+.+......
T Consensus 60 ~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~ 122 (207)
T 2fxa_A 60 LNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLEE 122 (207)
T ss_dssp HTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999773221 111 12336788777766665543
No 414
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=79.48 E-value=2 Score=30.27 Aligned_cols=44 Identities=14% Similarity=0.358 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHc-C--CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 103 HIRLKIVEMAAA-G--VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 103 ~~R~rIV~l~~~-G--~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
+..++|++.+++ | ++..+||+.+||.+..|.+.+++.+..|.+.
T Consensus 19 d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 19 HLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVS 65 (80)
T ss_dssp HHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCcc
Confidence 678899987654 5 8899999999999999999999999999763
No 415
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=79.45 E-value=2.1 Score=35.76 Aligned_cols=41 Identities=12% Similarity=0.150 Sum_probs=33.3
Q ss_pred CcCCHHHHHHHHH-HHHcCCCHHHHhhhhccccchhhhHHHH
Q psy1898 98 RPLPNHIRLKIVE-MAAAGVRPCVISRQLRVSHGCVSKILNR 138 (230)
Q Consensus 98 ~~~s~~~R~rIV~-l~~~G~s~~~IAr~lgVS~sTV~kwikR 138 (230)
..++.-.+...+. +...|++..+||+.+|+|++||+++++-
T Consensus 116 ~~L~~~E~a~~~~~l~~~g~t~~~iA~~lG~s~~~V~~~l~l 157 (230)
T 1vz0_A 116 EDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRL 157 (230)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4567777766665 4567999999999999999999998764
No 416
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=79.42 E-value=2 Score=32.57 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=27.3
Q ss_pred HHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 102 NHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 102 ~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
.+.|.+|++. + +.| .|..+||+..|||++|+|+..
T Consensus 6 ~~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~tly~~F 48 (180)
T 2fd5_A 6 TQTRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHF 48 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGGGGTC
T ss_pred ccCHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCccHHHHHC
Confidence 3567777762 2 334 899999999999999999753
No 417
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=79.34 E-value=1.3 Score=33.36 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=28.6
Q ss_pred CHHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHHH
Q psy1898 101 PNHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 101 s~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwik 137 (230)
+.+.|.+|++. + +.| .|..+||+..|||++|+|+...
T Consensus 12 ~~~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 56 (156)
T 3ljl_A 12 TEITIQKIMDAVVDQLLRLGYDKMSYTTLSQQTGVSRTGISHHFP 56 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHCCHHHHHHHHTCCHHHHHHHCS
T ss_pred hHhHHHHHHHHHHHHHHHhChhhcCHHHHHHHHCCCHHHHHHHCC
Confidence 45667777762 2 334 8999999999999999998743
No 418
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=79.33 E-value=1 Score=34.35 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=26.6
Q ss_pred HHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhH
Q psy1898 102 NHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKI 135 (230)
Q Consensus 102 ~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kw 135 (230)
.+.|.+|++. + +.| .|..+||+..|||++|+|+.
T Consensus 9 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 50 (196)
T 3col_A 9 MNKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVYLY 50 (196)
T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHHH
Confidence 4667777762 2 335 99999999999999999975
No 419
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=79.31 E-value=1.3 Score=34.40 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=27.8
Q ss_pred HHHHHHHHH----HH-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 102 NHIRLKIVE----MA-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 102 ~~~R~rIV~----l~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
.+.|.+|++ ++ +.| .|..+||+..|||++|+|+..
T Consensus 13 ~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~yF 55 (203)
T 3ccy_A 13 ENIRDTIIERAAAMFARQGYSETSIGDIARACECSKSRLYHYF 55 (203)
T ss_dssp TTHHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTTTC
T ss_pred hhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcCeeeeee
Confidence 456778877 33 345 899999999999999999764
No 420
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=79.28 E-value=0.81 Score=35.11 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=27.0
Q ss_pred HHHHHHHHHH-----HHcC---CCHHHHhhhhccccchhhhH
Q psy1898 102 NHIRLKIVEM-----AAAG---VRPCVISRQLRVSHGCVSKI 135 (230)
Q Consensus 102 ~~~R~rIV~l-----~~~G---~s~~~IAr~lgVS~sTV~kw 135 (230)
.+.|.+|++. .+.| .|..+||+..|||++|+|+.
T Consensus 6 ~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~ 47 (199)
T 3qbm_A 6 QETRERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGIYRH 47 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHhCcCcCCHHHHHHHhCCCccHHHHh
Confidence 4667777762 2334 89999999999999999985
No 421
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=79.26 E-value=0.58 Score=39.68 Aligned_cols=44 Identities=11% Similarity=0.134 Sum_probs=36.0
Q ss_pred HHHHHHHHHHH---cCCCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 103 HIRLKIVEMAA---AGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 103 ~~R~rIV~l~~---~G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
+.-.+|++++. .+++..+||+.+|++++||++.++...+.|-+.
T Consensus 21 ~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~ 67 (265)
T 2ia2_A 21 ARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVA 67 (265)
T ss_dssp HHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 33346666554 358999999999999999999999999999774
No 422
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=79.23 E-value=3.3 Score=30.74 Aligned_cols=92 Identities=12% Similarity=0.063 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHc----CCCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCH
Q psy1898 103 HIRLKIVEMAAA----GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFS 178 (230)
Q Consensus 103 ~~R~rIV~l~~~----G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~~~P~~t~ 178 (230)
+.-.+++..+.+ ..+..++|+.+++|+.++.+..+++ +|.. +.. -+...-.+....++ .+++.+.
T Consensus 11 ~~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~--~G~s-~~~-------~l~~~Rl~~A~~lL-~~~~~si 79 (129)
T 1bl0_A 11 ITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKE--TGHS-LGQ-------YIRSRKMTEIAQKL-KESNEPI 79 (129)
T ss_dssp HHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHH--HSSC-HHH-------HHHHHHHHHHHHHH-HHCCCCH
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH--HCcC-HHH-------HHHHHHHHHHHHHH-HcCCCCH
Confidence 334455554443 4899999999999999999987754 3431 100 00111112223334 3456788
Q ss_pred HHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC-CCCCC
Q psy1898 179 WEIRDRLVKQDGICDKNSAPSVSSISRLLRGG-RRDDC 215 (230)
Q Consensus 179 ~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~-g~~~~ 215 (230)
.+|+.. .|.. +.+...|..++. |..|.
T Consensus 80 ~~IA~~----~Gf~------~~s~F~r~Fk~~~G~tP~ 107 (129)
T 1bl0_A 80 LYLAER----YGFE------SQQTLTRTFKNYFDVPPH 107 (129)
T ss_dssp HHHHHH----TTCS------CHHHHHHHHHHHHSSCHH
T ss_pred HHHHHH----HCCC------CHHHHHHHHHHHHCcCHH
Confidence 777753 6884 889999988876 77665
No 423
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=79.21 E-value=3.1 Score=31.98 Aligned_cols=63 Identities=10% Similarity=0.037 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhhh-CC-CCcCCCC--CCCCCCCCHHHHHHHHH
Q psy1898 106 LKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQET-GS-IRPGVIG--GSKPRVATPDVEKRIEE 168 (230)
Q Consensus 106 ~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e~-G~-v~p~~~g--g~rpr~lt~~~~~~I~~ 168 (230)
.+++..+.+-.|.+.+|+.++||+++|++.+++.++. |. +-.+..+ +++.-.+|++-+..+..
T Consensus 29 L~~f~av~e~gS~s~AA~~L~iSqsavS~~I~~LE~~lG~~Lf~R~~~G~~grg~~LT~~G~~ll~~ 95 (135)
T 2ijl_A 29 VELMQLIAETGSISAAGRAMDMSYRRAWLLVDALNHMFRQPVICSQRGGKQGGGAALTVFGAELLER 95 (135)
T ss_dssp HHHHHHHHHHSCHHHHHHHTTCCHHHHHHHHHHHHHHBSSCSEEECCC------EEECHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCeeEEecCCCCCCCceeECHHHHHHHHH
Confidence 4555555554599999999999999999999999865 42 2222221 12566778876655543
No 424
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=79.19 E-value=1.4 Score=28.46 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=27.8
Q ss_pred CChhHHHHHHHHHhcCCC----hhhhhhhhccccccc
Q psy1898 56 LPNHIRLKIVEMAAAGVR----PCVISRQLRVSHGVN 88 (230)
Q Consensus 56 lp~~~r~~I~e~~~~g~~----~~~isr~lrvshg~~ 88 (230)
.+.++|.+|++++..|.+ ..+++++|+|++.+.
T Consensus 6 ys~efK~~~~~~~~~g~s~~~~~~~vA~~~gIs~~tl 42 (59)
T 2glo_A 6 FTPHFKLQVLESYRNDNDCKGNQRATARKYNIHRRQI 42 (59)
T ss_dssp CCHHHHHHHHHHHHHCTTTTTCHHHHHHHTTSCHHHH
T ss_pred CCHHHHHHHHHHHHcCCCcchHHHHHHHHHCcCHHHH
Confidence 459999999887778888 899999999977664
No 425
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=79.18 E-value=1.2 Score=34.30 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=28.0
Q ss_pred CHHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhH
Q psy1898 101 PNHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKI 135 (230)
Q Consensus 101 s~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kw 135 (230)
+.+.|.+|++. + +.| .|..+||+..|||++|+|+.
T Consensus 9 ~~~~r~~Il~aA~~lf~~~G~~~~ti~~IA~~agvs~~t~Y~~ 51 (204)
T 3eup_A 9 SDRTRQFIIESTAPVFNVKGLAGTSLTDLTEATNLTKGSIYGN 51 (204)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHTTT
T ss_pred chHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcHHHHHh
Confidence 45777888872 2 334 89999999999999999985
No 426
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=79.04 E-value=1.1 Score=31.26 Aligned_cols=31 Identities=13% Similarity=0.349 Sum_probs=28.9
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
.+..+||++||+++.+|.+.+-+..+.|.+.
T Consensus 30 ~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~ 60 (75)
T 1sfu_A 30 TTAISLSNRLKINKKKINQQLYKLQKEDTVK 60 (75)
T ss_dssp ECHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 7899999999999999999999999999873
No 427
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=79.00 E-value=1.2 Score=35.15 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=27.0
Q ss_pred HHHHHHHH----HH-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 103 HIRLKIVE----MA-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 103 ~~R~rIV~----l~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
+.|.+|++ ++ +.| .|..+||+..|||++|+|+..
T Consensus 8 ~~r~~Il~aA~~lf~~~Gy~~~s~~~IA~~AGvs~gt~Y~yF 49 (206)
T 1vi0_A 8 PKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYF 49 (206)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCChhHHHHHc
Confidence 56777776 22 345 899999999999999999863
No 428
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=78.93 E-value=2 Score=33.38 Aligned_cols=35 Identities=11% Similarity=0.188 Sum_probs=27.7
Q ss_pred HHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 102 NHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 102 ~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
.+.|.+|++. + +.| .|..+||+..|||++|+|...
T Consensus 11 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F 53 (197)
T 2hyt_A 11 EETRATLLATARKVFSERGYADTSMDDLTAQASLTRGALYHHF 53 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHc
Confidence 4567777762 2 345 899999999999999999864
No 429
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=78.92 E-value=1.1 Score=34.93 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=26.4
Q ss_pred HHHHHHHH----HH-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 103 HIRLKIVE----MA-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 103 ~~R~rIV~----l~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
+.|.+|++ ++ +.| .|..+||+..|||++|+|+..
T Consensus 7 ~~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvs~gtlY~~F 48 (197)
T 2gen_A 7 SRKDEILQAALACFSEHGVDATTIEMIRDRSGASIGSLYHHF 48 (197)
T ss_dssp -CHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHHHC
Confidence 55777776 23 345 899999999999999999864
No 430
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=78.88 E-value=2 Score=34.61 Aligned_cols=40 Identities=13% Similarity=0.136 Sum_probs=31.8
Q ss_pred cCCHHHHHHHHH-HHHcCCCHHHHhhhhccccchhhhHHHH
Q psy1898 99 PLPNHIRLKIVE-MAAAGVRPCVISRQLRVSHGCVSKILNR 138 (230)
Q Consensus 99 ~~s~~~R~rIV~-l~~~G~s~~~IAr~lgVS~sTV~kwikR 138 (230)
.+++-.+...+. +...|.+..+||+.||+|+++|++.++-
T Consensus 35 dL~piE~A~a~~~L~~~G~t~eeiA~~lG~s~s~V~~~LrL 75 (178)
T 1r71_A 35 ELTPREIADFIGRELAKGKKKGDIAKEIGKSPAFITQHVTL 75 (178)
T ss_dssp CCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 455566666655 5567999999999999999999998764
No 431
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=78.78 E-value=0.98 Score=32.07 Aligned_cols=40 Identities=5% Similarity=-0.018 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC
Q psy1898 159 TPDVEKRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGG 210 (230)
Q Consensus 159 t~~~~~~I~~l~~~~P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~ 210 (230)
.....+.|..++.+++ .++.||++.| | +|.+||++.|.++
T Consensus 15 ~~~~~~~IL~lL~~~g-~sa~eLAk~L----g-------iSk~aVr~~L~~L 54 (82)
T 1oyi_A 15 NAEIVCEAIKTIGIEG-ATAAQLTRQL----N-------MEKREVNKALYDL 54 (82)
T ss_dssp SHHHHHHHHHHHSSST-EEHHHHHHHS----S-------SCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CCHHHHHHHH----C-------cCHHHHHHHHHHH
Confidence 3467788888888777 8898888765 4 4999999999876
No 432
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=78.71 E-value=1.5 Score=33.64 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=25.9
Q ss_pred HHHHHHH----HH-HcC---CCHHHHhhhhccccchhhhHHH
Q psy1898 104 IRLKIVE----MA-AAG---VRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 104 ~R~rIV~----l~-~~G---~s~~~IAr~lgVS~sTV~kwik 137 (230)
.|.+|++ ++ +.| .|..+||+..|||++|+|+...
T Consensus 4 tr~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t~Y~~F~ 45 (190)
T 3vpr_A 4 TRDRILEEAAKLFTEKGYEATSVQDLAQALGLSKAALYHHFG 45 (190)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 4556665 33 334 8999999999999999998754
No 433
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=78.70 E-value=1.3 Score=33.72 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=28.1
Q ss_pred HHHHHHHHH----HH-HcC---CCHHHHhhhhccccchhhhHHH
Q psy1898 102 NHIRLKIVE----MA-AAG---VRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 102 ~~~R~rIV~----l~-~~G---~s~~~IAr~lgVS~sTV~kwik 137 (230)
.+.|.+|++ ++ +.| .|..+||+..|||++|+|+...
T Consensus 6 ~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~ 49 (186)
T 2jj7_A 6 EQTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFN 49 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChhhhhhhcC
Confidence 466777776 22 334 9999999999999999998754
No 434
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=78.61 E-value=1.6 Score=34.02 Aligned_cols=36 Identities=14% Similarity=0.051 Sum_probs=28.3
Q ss_pred HHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHHH
Q psy1898 102 NHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 102 ~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwik 137 (230)
.+.|.+|++. + +.| .|..+||+..|||++|+|+...
T Consensus 16 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~ 59 (218)
T 3gzi_A 16 TQNRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRYYFG 59 (218)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHHHcC
Confidence 3577788773 2 235 8999999999999999998753
No 435
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=78.60 E-value=1.3 Score=34.00 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=27.5
Q ss_pred HHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 102 NHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 102 ~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
.+.|.+|++. + +.| .|..+||+..|||++|+|+..
T Consensus 19 ~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 61 (203)
T 3mnl_A 19 RERRKRILDATMAIASKGGYEAVQMRAVADRADVAVGTLYRYF 61 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCHHHHHHHcCCChhHHHHHc
Confidence 4667777762 2 334 999999999999999999864
No 436
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=78.59 E-value=0.34 Score=36.29 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=23.0
Q ss_pred cCCCHHHHhhhhccccchhhhHHHH
Q psy1898 114 AGVRPCVISRQLRVSHGCVSKILNR 138 (230)
Q Consensus 114 ~G~s~~~IAr~lgVS~sTV~kwikR 138 (230)
.|+|..++|+.+|||++||++|.+-
T Consensus 4 ~glTQ~eLA~~~Gvs~~~is~~E~G 28 (122)
T 1nr3_A 4 RGWSQKKIARELKTTRQNVSAIERK 28 (122)
T ss_dssp CSCSSCSTHHHHHHCCSSSCCHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5899999999999999999999874
No 437
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=78.56 E-value=0.98 Score=35.31 Aligned_cols=35 Identities=14% Similarity=0.382 Sum_probs=27.9
Q ss_pred HHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 102 NHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 102 ~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
.+.|.+|++. + +.| .|..+||+..|||++|+|+..
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~~F 52 (212)
T 2ras_A 10 DAMRARLVDVAQAIVEERGGAGLTLSELAARAGISQANLSRYF 52 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHHHTTTC
T ss_pred hHHHHHHHHHHHHHHHHhCcccCcHHHHHHHhCCCHHHHHHHc
Confidence 4677788772 2 334 899999999999999999864
No 438
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=78.53 E-value=1.2 Score=34.42 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 100 LPNHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 100 ~s~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
-+.+.|.+|++. + +.| .|..+||+..|||++|+|+..
T Consensus 11 ~~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 55 (215)
T 3e7q_A 11 EPEQRKALLIEATLACLKRHGFQGASVRKICAEAGVSVGLINHHY 55 (215)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHc
Confidence 345678888873 2 334 899999999999999999863
No 439
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=78.39 E-value=1.9 Score=33.54 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=26.8
Q ss_pred HHHHHHHHH----H-HcC--CCHHHHhhhhccccchhhhHH
Q psy1898 103 HIRLKIVEM----A-AAG--VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 103 ~~R~rIV~l----~-~~G--~s~~~IAr~lgVS~sTV~kwi 136 (230)
+.|.+|++. + +.| .|..+||+..|||++|+|+..
T Consensus 13 ~~r~~Il~aA~~lf~~~G~~~t~~~IA~~agvs~~tlY~~F 53 (196)
T 2qwt_A 13 RNRARVLEVAYDTFAAEGLGVPMDEIARRAGVGAGTVYRHF 53 (196)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSCHHHHHHHTTSCHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHC
Confidence 556777762 2 345 899999999999999999863
No 440
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=78.24 E-value=1.4 Score=34.48 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHH-----HHcC---CCHHHHhhhhccccchhhhHH
Q psy1898 100 LPNHIRLKIVEM-----AAAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 100 ~s~~~R~rIV~l-----~~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
.+.+.|.+|++. .+.| .|..+||+..|||++|+|...
T Consensus 11 ~~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~tlY~yF 55 (199)
T 3crj_A 11 TFSDQTEEIMQATYRALREHGYADLTIQRIADEYGKSTAAVHYYY 55 (199)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHTSCHHHHHTTC
T ss_pred cchhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChhHHhhhc
Confidence 345778888873 2335 899999999999999999753
No 441
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=78.24 E-value=1.9 Score=34.97 Aligned_cols=35 Identities=14% Similarity=0.321 Sum_probs=27.6
Q ss_pred HHHHHHHHH----HH-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 102 NHIRLKIVE----MA-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 102 ~~~R~rIV~----l~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
.+.|.+|++ ++ +.| .|..+||+..|||++|+|+..
T Consensus 45 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~aGvs~~t~Y~~F 87 (245)
T 3aqt_A 45 EQTRARLITSARTLMAERGVDNVGIAEITEGANIGTGTFYNYF 87 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGGGGTC
T ss_pred HHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhCCChHHHHHHc
Confidence 466777776 33 335 899999999999999999853
No 442
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=78.23 E-value=1.9 Score=33.64 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=27.2
Q ss_pred HHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 103 HIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 103 ~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
+.|.+|++. + +.| .|..+||+..|||++|+|...
T Consensus 14 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~~F 55 (204)
T 2ibd_A 14 GRRTELLDIAATLFAERGLRATTVRDIADAAGILSGSLYHHF 55 (204)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCchhHHHhc
Confidence 667777762 2 335 899999999999999999864
No 443
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=78.23 E-value=1.2 Score=35.79 Aligned_cols=32 Identities=3% Similarity=0.024 Sum_probs=29.7
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCc
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 147 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p 147 (230)
.+..+||..+|+|+.||++.++++++.|.+.-
T Consensus 181 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 212 (232)
T 2gau_A 181 LSREELATLSNMTVSNAIRTLSTFVSERMLAL 212 (232)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCCEee
Confidence 68999999999999999999999999998753
No 444
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=78.13 E-value=2 Score=31.97 Aligned_cols=32 Identities=9% Similarity=0.230 Sum_probs=29.8
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCc
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 147 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p 147 (230)
.+..+||+.++||+++|+++++..++.|-+..
T Consensus 27 ~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~ 58 (129)
T 2y75_A 27 TSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKS 58 (129)
T ss_dssp BCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCceEe
Confidence 89999999999999999999999999998753
No 445
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=78.12 E-value=0.88 Score=37.53 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=38.3
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEE 168 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~ 168 (230)
.+.+++|+.+++|++||++.+++..+.|.+...+.++.+.-.+|++-.+.+..
T Consensus 28 ~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~~ 80 (230)
T 3cta_A 28 LTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYT 80 (230)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHHH
Confidence 67999999999999999999999999886632211122344677776555543
No 446
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=78.09 E-value=0.91 Score=38.18 Aligned_cols=65 Identities=15% Similarity=0.038 Sum_probs=41.7
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCC-CCCCCCCCCHHH---HHHHHHHHHhCCCCCHHHHHHHHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI-GGSKPRVATPDV---EKRIEEYKKTNPGIFSWEIRDRLV 186 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~-gg~rpr~lt~~~---~~~I~~l~~~~P~~t~~eI~~~L~ 186 (230)
++..++|+.+|||..|+..|. +.|.+.|..+ ....-+..+.++ ...|..+. .-..++.+|++.|.
T Consensus 6 ~~i~e~a~~~gvs~~tlr~y~----~~gll~p~~~d~~~g~R~y~~~~~~~l~~i~~l~--~~g~~l~~i~~~~~ 74 (278)
T 1r8e_A 6 YSIGEVSKLANVSIKALRYYD----KIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLK--YIGTPLEEMKKAQD 74 (278)
T ss_dssp EEHHHHHHHHTCCHHHHHHHH----HTTSSCCSEECTTTCCEEEETGGGGHHHHHHHHH--HTTCCHHHHHHHTT
T ss_pred EeHHHHHHHHCcCHHHHHHHH----HCCCCCCCccCCCCCccccCHHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 678999999999999988764 4588766433 112234444443 33444443 23688888887763
No 447
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=78.06 E-value=1.7 Score=34.00 Aligned_cols=35 Identities=11% Similarity=0.230 Sum_probs=28.0
Q ss_pred HHHHHHHH----H-HHcC---CCHHHHhhhhccccchhhhHHH
Q psy1898 103 HIRLKIVE----M-AAAG---VRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 103 ~~R~rIV~----l-~~~G---~s~~~IAr~lgVS~sTV~kwik 137 (230)
+.|.+|++ + .+.| .|..+||+..|||++|+|+...
T Consensus 15 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~~F~ 57 (221)
T 3c2b_A 15 PRQNAVLDQALRLLVEGGEKALTTSGLARAANCSKESLYKWFG 57 (221)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHHhCC
Confidence 56777776 2 2345 8999999999999999998754
No 448
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=78.06 E-value=2.1 Score=33.12 Aligned_cols=32 Identities=9% Similarity=0.316 Sum_probs=30.0
Q ss_pred CCCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 115 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 115 G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
+.+..+||+.++++++||++.+++..+.|-+.
T Consensus 68 ~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~ 99 (166)
T 3deu_A 68 DQSQIQLAKAIGIEQPSLVRTLDQLEDKGLIS 99 (166)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEE
Confidence 58999999999999999999999999999774
No 449
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=77.95 E-value=1.8 Score=34.57 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=27.8
Q ss_pred HHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 102 NHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 102 ~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
.+.|.+|++. + +.| .|..+||+..|||++|+|...
T Consensus 42 ~~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~~F 84 (229)
T 3bni_A 42 AERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSVYRFF 84 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhHHHHc
Confidence 4677778773 2 335 899999999999999999863
No 450
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=77.87 E-value=1.4 Score=33.53 Aligned_cols=34 Identities=9% Similarity=0.190 Sum_probs=27.0
Q ss_pred HHHHHHHH----HH-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 103 HIRLKIVE----MA-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 103 ~~R~rIV~----l~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
+.|.+|++ ++ +.| .|..+||+..|||++|+|+..
T Consensus 10 ~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F 51 (191)
T 3on4_A 10 NTKERILAVAEALIQKDGYNAFSFKDIATAINIKTASIHYHF 51 (191)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchhhhcC
Confidence 56777776 22 345 999999999999999999864
No 451
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=77.86 E-value=3.1 Score=30.65 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=23.2
Q ss_pred CCCHHHHhhhhccccchhhhHHHHH
Q psy1898 115 GVRPCVISRQLRVSHGCVSKILNRY 139 (230)
Q Consensus 115 G~s~~~IAr~lgVS~sTV~kwikRy 139 (230)
.+|..++|+..+||.+||.|..++.
T Consensus 39 ~~si~elA~~~~vS~aTv~Rf~kkl 63 (111)
T 2o3f_A 39 ESTVNEISALANSSDAAVIRLCXSL 63 (111)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hcCHHHHHHHHCCCHHHHHHHHHHc
Confidence 6999999999999999999999874
No 452
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=77.84 E-value=0.45 Score=40.72 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=0.0
Q ss_pred CCHHHHhhhhccccchhhhHHHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNR 138 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikR 138 (230)
.|.++||+..|||++||++.++.
T Consensus 4 ~ti~diA~~agVS~~TVSrvln~ 26 (338)
T 3dbi_A 4 TTMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHCC
Confidence 37899999999999999999874
No 453
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=77.66 E-value=1.2 Score=36.37 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=38.7
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCCcCCCCCCCCCCCCHHHHHHHHHHHHhCC
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNP 174 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~p~~~gg~rpr~lt~~~~~~I~~l~~~~P 174 (230)
.+..+||..+|+|+.||++.++++++.|.+.-. +++-..++ .+.+.++....+
T Consensus 178 ~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~---~~~i~i~d---~~~L~~~a~~~~ 230 (250)
T 3e6c_C 178 LSQKSIGEITGVHHVTVSRVLASLKRENILDKK---KNKIIVYN---LGELKHLSEQTS 230 (250)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC---SSEEEESC---HHHHHHHHTSSC
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeC---CCEEEEec---HHHHHHHHccCc
Confidence 689999999999999999999999999987532 11233333 345555554444
No 454
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=77.66 E-value=1.2 Score=36.33 Aligned_cols=31 Identities=16% Similarity=0.256 Sum_probs=29.2
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
++..+||..+|+|+.||++.++++++.|.+.
T Consensus 194 lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 224 (243)
T 3la7_A 194 LSHQAIAEAIGSTRVTVTRLLGDLREKKMIS 224 (243)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHCCcHHHHHHHHHHHHHCCCEE
Confidence 6889999999999999999999999999875
No 455
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=77.60 E-value=1.7 Score=33.74 Aligned_cols=35 Identities=14% Similarity=-0.095 Sum_probs=27.8
Q ss_pred CHHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhH
Q psy1898 101 PNHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKI 135 (230)
Q Consensus 101 s~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kw 135 (230)
+.+.|.+|++. + +.| .|..+||+..|||++|+|+.
T Consensus 17 ~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~ 59 (216)
T 3qqa_A 17 VLARQEKIKAVALELFLTKGYQETSLSDIIKLSGGSYSNIYDG 59 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTTSCCSSSCS
T ss_pred cHHHHHHHHHHHHHHHHHcChhhCCHHHHHHHhCCCHHHHHHh
Confidence 34677888873 2 345 89999999999999999975
No 456
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=77.59 E-value=1.8 Score=33.96 Aligned_cols=40 Identities=13% Similarity=0.162 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 100 LPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 100 ~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
++..+ .+++.++..|.+.++||..+++|..||...+.+-.
T Consensus 143 Lt~rE-~~vl~~l~~g~s~~~Ia~~l~is~~TV~~~~~~i~ 182 (208)
T 1yio_A 143 LTGRE-QQVLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIM 182 (208)
T ss_dssp SCHHH-HHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCHHH-HHHHHHHHcCCcHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44333 45777888899999999999999999988777644
No 457
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=77.46 E-value=3.4 Score=28.83 Aligned_cols=43 Identities=16% Similarity=0.028 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC
Q psy1898 157 VATPDVEKRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGG 210 (230)
Q Consensus 157 ~lt~~~~~~I~~l~~~~P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~ 210 (230)
.+++.....|..+...++..+..+|++.+ | +|.+||++.|+.+
T Consensus 18 ~l~~~~~~~l~~l~~~~~~~t~~ela~~l----~-------is~~tv~~~l~~L 60 (109)
T 2d1h_A 18 KITDTDVAVLLKMVEIEKPITSEELADIF----K-------LSKTTVENSLKKL 60 (109)
T ss_dssp TCCHHHHHHHHHHHHHCSCEEHHHHHHHH----T-------CCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCCCHHHHHHHH----C-------cCHHHHHHHHHHH
Confidence 34666666677777657789999998865 4 4999999998766
No 458
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=77.43 E-value=1.1 Score=35.64 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=27.3
Q ss_pred HHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 102 NHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 102 ~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
.+.|.+|++. + +.| .|..+||+..|||++|+|+..
T Consensus 4 ~~tr~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F 46 (228)
T 3nnr_A 4 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHF 46 (228)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHhChhhcCHHHHHHHhCCCCccchhcC
Confidence 3567777762 2 335 899999999999999999864
No 459
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=77.41 E-value=1.4 Score=35.79 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=29.6
Q ss_pred CCCHHHHhhhhccccc-hhhhHHHHHhhhCCCCc
Q psy1898 115 GVRPCVISRQLRVSHG-CVSKILNRYQETGSIRP 147 (230)
Q Consensus 115 G~s~~~IAr~lgVS~s-TV~kwikRy~e~G~v~p 147 (230)
..+..+||..+|+|++ ||++.++++++.|.+.-
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~ 202 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVY 202 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEe
Confidence 4688999999999995 99999999999998753
No 460
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=77.34 E-value=1.2 Score=35.79 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=26.9
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCC
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGS 144 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~ 144 (230)
.+..+||..+|+|+.||++.++++++.|.
T Consensus 179 ~t~~~iA~~lg~sr~tvsR~l~~L~~~gi 207 (237)
T 3fx3_A 179 YDKMLIAGRLGMKPESLSRAFSRLKAAGV 207 (237)
T ss_dssp SCTHHHHHHTTCCHHHHHHHHHHHGGGTE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCe
Confidence 46889999999999999999999999993
No 461
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=77.32 E-value=0.95 Score=39.01 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHH-cCCCHHHHhhhhccccchhhhHHH
Q psy1898 102 NHIRLKIVEMAA-AGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 102 ~~~R~rIV~l~~-~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
...|..|..+++ .+.+..++|+.||||++|+|++++
T Consensus 267 ~~e~~~i~~~l~~~~gn~~~aA~~Lgi~r~tl~~kl~ 303 (304)
T 1ojl_A 267 DVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 303 (304)
T ss_dssp HHHHHHHHHHHHTTTTCHHHHHHHHTSCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 345666766665 477999999999999999999864
No 462
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=77.24 E-value=1.9 Score=32.76 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=26.3
Q ss_pred HHHHHHHH----HH-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 103 HIRLKIVE----MA-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 103 ~~R~rIV~----l~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
+.|.+|++ ++ +.| .|..+||+..|||++|+|+..
T Consensus 9 ~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F 50 (195)
T 3ppb_A 9 TKKQAILETALQLFVSQGFHGTSTATIAREAGVATGTLFHHF 50 (195)
T ss_dssp CHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHc
Confidence 45666666 33 345 899999999999999999863
No 463
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=77.22 E-value=2 Score=32.53 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=27.1
Q ss_pred HHHHHHHH----HH-HcC---CCHHHHhhhhccccchhhhHHH
Q psy1898 103 HIRLKIVE----MA-AAG---VRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 103 ~~R~rIV~----l~-~~G---~s~~~IAr~lgVS~sTV~kwik 137 (230)
+.|.+|++ ++ +.| .|..+||+..|||++|+|+...
T Consensus 6 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 48 (191)
T 1sgm_A 6 DSREKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFP 48 (191)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHHSTT
T ss_pred chHHHHHHHHHHHHHHcCccccCHHHHHHHHCCCchhHHHHcc
Confidence 45666665 33 335 8999999999999999998764
No 464
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=77.21 E-value=1.3 Score=33.84 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=27.1
Q ss_pred CHHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 101 PNHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 101 s~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
+.+.|.+|++. + +.| .|..+||+..|||++|+|+..
T Consensus 8 ~~~~r~~Il~aa~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F 51 (197)
T 3rd3_A 8 YDDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYF 51 (197)
T ss_dssp --CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHTTTC
T ss_pred hHhHHHHHHHHHHHHHHHCCcccCCHHHHHHHhCCChhhHHHHc
Confidence 34667777763 2 345 899999999999999999853
No 465
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=77.15 E-value=1.9 Score=33.26 Aligned_cols=34 Identities=6% Similarity=-0.040 Sum_probs=26.0
Q ss_pred HHHHHHH----HH-HcC---CCHHHHhhhhccccchhhhHHH
Q psy1898 104 IRLKIVE----MA-AAG---VRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 104 ~R~rIV~----l~-~~G---~s~~~IAr~lgVS~sTV~kwik 137 (230)
.|.+|++ ++ +.| .|..+||+..|||++|+|++..
T Consensus 5 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 46 (185)
T 2yve_A 5 KKEMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFP 46 (185)
T ss_dssp HHHHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHcChhhccHHHHHHHhCCChHHHHHhCc
Confidence 4556665 33 345 8999999999999999998743
No 466
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=77.10 E-value=1.4 Score=33.91 Aligned_cols=21 Identities=10% Similarity=0.044 Sum_probs=19.4
Q ss_pred CCHHHHhhhhccccchhhhHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwi 136 (230)
.|..+||+..|||++|+|+..
T Consensus 28 ~t~~~IA~~agvs~~tlY~~F 48 (192)
T 2zcm_A 28 TTLDDISKSVNIKKASLYYHY 48 (192)
T ss_dssp CCHHHHHHHTTCCHHHHHHHT
T ss_pred CCHHHHHHHhCCChHHHHHHC
Confidence 899999999999999999764
No 467
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=77.10 E-value=1.5 Score=33.03 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=22.6
Q ss_pred HcCCCHHHHhhhhccccchhhhHHH
Q psy1898 113 AAGVRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 113 ~~G~s~~~IAr~lgVS~sTV~kwik 137 (230)
+.|+|..++|+.+|||++++++|.+
T Consensus 14 ~~gltq~elA~~~gis~~~is~iE~ 38 (130)
T 3fym_A 14 RLGMTLTELEQRTGIKREMLVHIEN 38 (130)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 3599999999999999999999953
No 468
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=77.06 E-value=1.6 Score=34.37 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=27.2
Q ss_pred HHHHHHHH----HH-HcC---CCHHHHhhhhccccchhhhHHH
Q psy1898 103 HIRLKIVE----MA-AAG---VRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 103 ~~R~rIV~----l~-~~G---~s~~~IAr~lgVS~sTV~kwik 137 (230)
+.|.+|++ ++ +.| .|..+||+..|||++|+|....
T Consensus 3 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~AGvskgtlY~hF~ 45 (208)
T 2g3b_A 3 ERRDAILKASATAIAQRGIRGLRVNDVAEVAGVSPGLLYYHFK 45 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHCC
Confidence 56777776 22 334 9999999999999999998743
No 469
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=76.89 E-value=0.5 Score=40.54 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=0.0
Q ss_pred CCHHHHhhhhccccchhhhHHHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNR 138 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikR 138 (230)
.|.++||+.+|||++||++.++.
T Consensus 5 ~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 5 VTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 57899999999999999999874
No 470
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=76.88 E-value=1.7 Score=34.78 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHhhhhccccchhhhHHHHHh
Q psy1898 100 LPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 100 ~s~~~R~rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
++..+ .+|+.++..|.+..+||+.+++|..||...+++-+
T Consensus 160 Lt~rE-~~vL~~l~~g~s~~~Ia~~l~~s~~Tv~~~i~~l~ 199 (225)
T 3klo_A 160 LTKRE-QQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVF 199 (225)
T ss_dssp SCHHH-HHHHHHHTTTCCHHHHHHHTTCCHHHHHHHHHHHT
T ss_pred CCHHH-HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 55443 46777788899999999999999999999988754
No 471
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=76.66 E-value=1.9 Score=33.80 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=27.3
Q ss_pred HHHHHHHH----HH-HcC---CCHHHHhhhhccccchhhhHHH
Q psy1898 103 HIRLKIVE----MA-AAG---VRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 103 ~~R~rIV~----l~-~~G---~s~~~IAr~lgVS~sTV~kwik 137 (230)
+.|.+|++ ++ +.| .|..+||+..|||++|+|+...
T Consensus 8 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tiY~~F~ 50 (202)
T 2d6y_A 8 ATKARIFEAAVAEFARHGIAGARIDRIAAEARANKQLIYAYYG 50 (202)
T ss_dssp CHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 45667776 22 335 8999999999999999998754
No 472
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=76.65 E-value=1.3 Score=36.60 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=29.0
Q ss_pred CCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
.+..+||..+|+|+.||++.++++++.|.+.
T Consensus 218 lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 248 (260)
T 3kcc_A 218 ITRQEIGQIVGCSRETVGRILKMLEDQNLIS 248 (260)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 5789999999999999999999999999875
No 473
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=76.54 E-value=1.5 Score=34.26 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=26.1
Q ss_pred HHHHHHHH----HH-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 103 HIRLKIVE----MA-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 103 ~~R~rIV~----l~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
+.|.+|++ ++ +.| .|..+||+..|||++|+|+..
T Consensus 3 ~tr~~Il~aA~~lf~~~G~~~~s~~~IA~~Agvs~~t~Y~~F 44 (212)
T 3rh2_A 3 KTRDKIIQASLELFNEHGERTITTNHIAAHLDISPGNLYYHF 44 (212)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHC
Confidence 35666665 22 345 899999999999999999864
No 474
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=76.47 E-value=2.7 Score=32.64 Aligned_cols=39 Identities=10% Similarity=0.201 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC
Q psy1898 161 DVEKRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGG 210 (230)
Q Consensus 161 ~~~~~I~~l~~~~P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~ 210 (230)
+.+..|...+++++.++..+|++.| | +|.+||++.|+++
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l----g-------~s~~tv~~rl~~L 41 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV----G-------LSTTPCWRRIQKM 41 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH----T-------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH----C-------cCHHHHHHHHHHH
Confidence 4566788888899999999998866 4 4999999998876
No 475
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=76.38 E-value=1.8 Score=33.83 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=27.7
Q ss_pred HHHHHHHHH----HH-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 102 NHIRLKIVE----MA-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 102 ~~~R~rIV~----l~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
.+.|.+|++ ++ +.| .|..+||+..|||++|+|+..
T Consensus 29 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~~F 71 (222)
T 3bru_A 29 SLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHYF 71 (222)
T ss_dssp GGHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhhhC
Confidence 466777776 23 345 899999999999999999864
No 476
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=76.35 E-value=1.8 Score=33.44 Aligned_cols=36 Identities=8% Similarity=0.055 Sum_probs=28.2
Q ss_pred HHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHHH
Q psy1898 102 NHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 102 ~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwik 137 (230)
.+.|.+|++. + +.| .|..+||+..|||++|+|+...
T Consensus 15 ~~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 58 (213)
T 2qtq_A 15 PGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVKYYFG 58 (213)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHhHhcC
Confidence 4667777763 2 335 8999999999999999998753
No 477
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=76.33 E-value=6.7 Score=32.06 Aligned_cols=57 Identities=16% Similarity=0.118 Sum_probs=33.7
Q ss_pred HHHHHHHcCCCHHHHhhhhccccchhhhHHHHHhhh-CC-CCcCCCCCCCCCCCCHHHHHH
Q psy1898 107 KIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQET-GS-IRPGVIGGSKPRVATPDVEKR 165 (230)
Q Consensus 107 rIV~l~~~G~s~~~IAr~lgVS~sTV~kwikRy~e~-G~-v~p~~~gg~rpr~lt~~~~~~ 165 (230)
++...+.+-.|.+.+|+.|+||+++|++-+++.++. |. +-.+. +++.-.+|++-+..
T Consensus 10 ~~f~~v~~~~s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~--~~~~~~lT~~G~~l 68 (306)
T 3fzv_A 10 KYFVTTVECGSVAEASRKLYIAQPSISTAVKGLEESFGVQLFIRH--HAQGVSLTPAGARF 68 (306)
T ss_dssp HHHHHHHHSSSHHHHHHHHTCCC-CHHHHHHHHHHHC-CCCC-----------CCHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHhCCCchHHHHHHHHHHHHhCCeeEeec--CCCCceECHhHHHH
Confidence 344444555599999999999999999999998865 53 22221 12455667754433
No 478
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=76.16 E-value=1.3 Score=33.72 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=22.1
Q ss_pred HHHHHHHHH----HH-HcC---CCHHHHhhhhccccchhhhH
Q psy1898 102 NHIRLKIVE----MA-AAG---VRPCVISRQLRVSHGCVSKI 135 (230)
Q Consensus 102 ~~~R~rIV~----l~-~~G---~s~~~IAr~lgVS~sTV~kw 135 (230)
.+.|.+|++ ++ +.| .|..+||+..|||++|+|+.
T Consensus 11 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~ 52 (199)
T 3on2_A 11 GSLRRVLLARAESTLEKDGVDGLSLRQLAREAGVSHAAPSKH 52 (199)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTC-----CCCS
T ss_pred HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHhCCChHHHHHH
Confidence 356777776 22 345 89999999999999999975
No 479
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=76.10 E-value=2.3 Score=34.04 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=28.1
Q ss_pred CHHHHHHHHH----HH-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 101 PNHIRLKIVE----MA-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 101 s~~~R~rIV~----l~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
..+.|.+|++ ++ +.| .|..+||+..|||++|+|+..
T Consensus 11 ~~~~r~~Il~AA~~l~~~~G~~~~tv~~IA~~agvs~~t~Y~~F 54 (231)
T 2qib_A 11 VEERRQQLIGVALDLFSRRSPDEVSIDEIASAAGISRPLVYHYF 54 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHHHHC
Confidence 3466777776 23 345 899999999999999999764
No 480
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=76.05 E-value=0.54 Score=40.61 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=0.0
Q ss_pred CCHHHHhhhhccccchhhhHHHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNR 138 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikR 138 (230)
.+.++||+..|||++||++.++.
T Consensus 4 ~ti~diA~~aGVS~~TVSrvLn~ 26 (349)
T 1jye_A 4 VTLYDVAEYAGVSYQTVSRVVNQ 26 (349)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 47899999999999999999985
No 481
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=76.03 E-value=0.54 Score=40.64 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=0.0
Q ss_pred CCHHHHhhhhccccchhhhHHHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNR 138 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikR 138 (230)
.|.++||+.+|||++||++.++.
T Consensus 13 ~ti~diA~~agVS~~TVSr~Ln~ 35 (355)
T 3e3m_A 13 VTMRDVAKAAGVSRMTVSRALKK 35 (355)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHhCCCHHHHHHHHCC
Confidence 58899999999999999999874
No 482
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=75.98 E-value=2.3 Score=32.93 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=27.1
Q ss_pred HHHHHHHHHH-----HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 103 HIRLKIVEMA-----AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 103 ~~R~rIV~l~-----~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
+.|.+|++.. +.| .|..+||+..|||++|+|..-
T Consensus 10 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~yF 51 (194)
T 2nx4_A 10 ERRRSITAAAWRLIAARGIEAANMRDIATEAGYTNGALSHYF 51 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHhC
Confidence 5677788732 334 899999999999999999864
No 483
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=75.94 E-value=3.4 Score=30.66 Aligned_cols=40 Identities=18% Similarity=0.107 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHhCCC--CCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC
Q psy1898 159 TPDVEKRIEEYKKTNPG--IFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGG 210 (230)
Q Consensus 159 t~~~~~~I~~l~~~~P~--~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~ 210 (230)
++.... |...+.+++. +|..+|++.+ + +|.+||+|.|+.+
T Consensus 25 t~~e~~-il~~L~~~~~~~~t~~eLa~~l----~-------~s~sTV~r~L~~L 66 (123)
T 3r0a_A 25 TKADLN-VMKSFLNEPDRWIDTDALSKSL----K-------LDVSTVQRSVKKL 66 (123)
T ss_dssp CHHHHH-HHHHHHHSTTCCEEHHHHHHHH----T-------SCHHHHHHHHHHH
T ss_pred CHHHHH-HHHHHHHCCCCCcCHHHHHHHH----C-------cCHHHHHHHHHHH
Confidence 444444 4444555665 8999999876 3 4999999998764
No 484
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=75.89 E-value=1.6 Score=34.71 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=27.2
Q ss_pred HHHHHHHHH----H-HHcC---CCHHHHhhhhccccchhhhHH
Q psy1898 102 NHIRLKIVE----M-AAAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 102 ~~~R~rIV~----l-~~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
.+.|.+|++ + .+.| .|..+||+..|||++|+|...
T Consensus 13 ~~~R~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~~tlY~~F 55 (208)
T 3v6g_A 13 AGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYF 55 (208)
T ss_dssp -CHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchhHHHHc
Confidence 356778887 2 2345 899999999999999999863
No 485
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=75.85 E-value=2.1 Score=33.41 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=26.9
Q ss_pred HHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhH
Q psy1898 102 NHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKI 135 (230)
Q Consensus 102 ~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kw 135 (230)
.+.|.+|++. + +.| .|..+||+..|||++|+|+.
T Consensus 11 ~~~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~agvs~gtlY~y 52 (205)
T 1rkt_A 11 DKRQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYLY 52 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCcchhhhh
Confidence 3567777762 2 335 89999999999999999975
No 486
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=75.79 E-value=0.55 Score=39.98 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-cCCCHHHHhhhhccccchhhhHHHH
Q psy1898 102 NHIRLKIVEMAA-AGVRPCVISRQLRVSHGCVSKILNR 138 (230)
Q Consensus 102 ~~~R~rIV~l~~-~G~s~~~IAr~lgVS~sTV~kwikR 138 (230)
..+..+|-.+.+ .|+|..++|+.+|||++||++|.+-
T Consensus 29 ~~~~~~l~~~r~~~g~t~~~la~~~g~s~~~is~~e~g 66 (311)
T 4ich_A 29 DELRRRVRGLIHSRPGAQREFAAAIGLDESKLSKSLNG 66 (311)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 345555655554 4899999999999999999999874
No 487
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=75.79 E-value=2.4 Score=32.84 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=28.6
Q ss_pred CHHHHHHHHHH-----HHcC---CCHHHHhhhhccccchhhhHH
Q psy1898 101 PNHIRLKIVEM-----AAAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 101 s~~~R~rIV~l-----~~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
..+.|.+|++. .+.| .|..+||+..|||++|+|+..
T Consensus 24 ~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 67 (217)
T 3mvp_A 24 SIEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLYAYF 67 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCChhHHHHHc
Confidence 45777888872 2345 999999999999999999853
No 488
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=75.70 E-value=1.3 Score=36.13 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=28.6
Q ss_pred cCCHHHHHHHHHHH-----HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 99 PLPNHIRLKIVEMA-----AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 99 ~~s~~~R~rIV~l~-----~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
+-+.+.|.+|++.. +.| .|..+||+..|||++|+|+..
T Consensus 39 ~~~~~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F 84 (255)
T 3g1o_A 39 PSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYF 84 (255)
T ss_dssp --CCHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHhCCCHHHHHHHc
Confidence 34457788888733 234 899999999999999999863
No 489
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=75.67 E-value=0.56 Score=40.56 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=0.0
Q ss_pred CCHHHHhhhhccccchhhhHHHH
Q psy1898 116 VRPCVISRQLRVSHGCVSKILNR 138 (230)
Q Consensus 116 ~s~~~IAr~lgVS~sTV~kwikR 138 (230)
.|.++||+.+|||++||++.++.
T Consensus 9 ~ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 9 PTLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHCC
Confidence 48899999999999999999974
No 490
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=75.59 E-value=2.2 Score=34.63 Aligned_cols=38 Identities=13% Similarity=0.024 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHc-C-CCHHHHhhhhccccchhhhHHHHHh
Q psy1898 103 HIRLKIVEMAAA-G-VRPCVISRQLRVSHGCVSKILNRYQ 140 (230)
Q Consensus 103 ~~R~rIV~l~~~-G-~s~~~IAr~lgVS~sTV~kwikRy~ 140 (230)
+.++.|++++.+ | .+..++|+.|+||..||.+=+....
T Consensus 12 eR~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~ 51 (190)
T 4a0z_A 12 KRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLN 51 (190)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhc
Confidence 444556666654 5 8999999999999999988766543
No 491
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=75.56 E-value=1.7 Score=33.90 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=27.5
Q ss_pred HHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 102 NHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 102 ~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
.+.|.+|++. + +.| .|..+||+..|||++|+|+.-
T Consensus 9 ~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~Agvskgt~Y~yF 51 (197)
T 2f07_A 9 SGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYF 51 (197)
T ss_dssp CSHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHHHhC
Confidence 3567777763 2 345 899999999999999999864
No 492
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=75.46 E-value=1.4 Score=34.78 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=27.0
Q ss_pred HHHHHHHHHHH-----HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 102 NHIRLKIVEMA-----AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 102 ~~~R~rIV~l~-----~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
.+.|.+|++.. +.| .|..+||+..|||++|+|+..
T Consensus 23 ~~~r~~Il~aA~~lf~e~G~~~~s~~~IA~~aGvskgtlY~yF 65 (214)
T 2oer_A 23 SELVASILEAAVQVLASEGAQRFTTARVAERAGVSIGSLYQYF 65 (214)
T ss_dssp CHHHHHHHHHHHHC------CCCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCCCchHHHhC
Confidence 36778888743 234 899999999999999999863
No 493
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=75.44 E-value=5.1 Score=27.10 Aligned_cols=46 Identities=15% Similarity=0.019 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCCCCCHhHHHHHHHcC
Q psy1898 157 VATPDVEKRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRGG 210 (230)
Q Consensus 157 ~lt~~~~~~I~~l~~~~P~~t~~eI~~~L~~~~Gi~~~~~~vS~sTV~R~Lr~~ 210 (230)
.+++.... |...+.++...+..+|.+.|....+ ++.+||.+.|.++
T Consensus 6 ~lt~~e~~-vL~~L~~~~~~t~~ei~~~l~~~~~-------~s~~Tv~~~l~rL 51 (82)
T 1p6r_A 6 QISDAELE-VMKVIWKHSSINTNEVIKELSKTST-------WSPKTIQTMLLRL 51 (82)
T ss_dssp CCCHHHHH-HHHHHHTSSSEEHHHHHHHHHHHSC-------CCHHHHHHHHHHH
T ss_pred CCCHHHHH-HHHHHHcCCCCCHHHHHHHHhhcCC-------ccHHHHHHHHHHH
Confidence 45666554 4445556778999999999975222 4888988887754
No 494
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=75.04 E-value=2.2 Score=33.29 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=28.0
Q ss_pred CHHHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhH
Q psy1898 101 PNHIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKI 135 (230)
Q Consensus 101 s~~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kw 135 (230)
..+.|.+|++. + +.| .|..+||+..|||++|+|..
T Consensus 10 ~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tlY~h 52 (200)
T 2hyj_A 10 AQATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGVHKH 52 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHTT
T ss_pred hhccHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHHHH
Confidence 34678888872 2 345 99999999999999999975
No 495
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=74.94 E-value=2.4 Score=33.43 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=28.2
Q ss_pred HHHHHHHHHH-----HHcC---CCHHHHhhhhccccchhhhHH
Q psy1898 102 NHIRLKIVEM-----AAAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 102 ~~~R~rIV~l-----~~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
.+.|.+|++. .+.| .|..+||+..|||++|+|..-
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~yF 50 (209)
T 2gfn_A 8 DERRRALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHYF 50 (209)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHSSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCcchHHhcC
Confidence 3677888873 2345 899999999999999999864
No 496
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=74.91 E-value=1.7 Score=33.34 Aligned_cols=32 Identities=13% Similarity=0.316 Sum_probs=29.4
Q ss_pred CCCHHHHhhhhccccchhhhHHHHHhhhCCCC
Q psy1898 115 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 146 (230)
Q Consensus 115 G~s~~~IAr~lgVS~sTV~kwikRy~e~G~v~ 146 (230)
+.+.++||+.++|+++||++.+++..+.|-+.
T Consensus 46 ~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~ 77 (151)
T 4aik_A 46 EQSQIQLAKAIGIEQPSLVRTLDQLEEKGLIT 77 (151)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeE
Confidence 47789999999999999999999999999773
No 497
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=74.86 E-value=1.3 Score=33.35 Aligned_cols=34 Identities=6% Similarity=-0.010 Sum_probs=26.5
Q ss_pred HHHHHHHHHH-----HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 103 HIRLKIVEMA-----AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 103 ~~R~rIV~l~-----~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
..|.+|++.+ +.| .|..+||+..|||++|+|+..
T Consensus 12 ~tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F 53 (177)
T 3kkc_A 12 KTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYSHY 53 (177)
T ss_dssp HHHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHHHHc
Confidence 5667777633 224 899999999999999999853
No 498
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=74.85 E-value=2.3 Score=32.83 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=26.5
Q ss_pred HHHHHHHH----HH-HcC--CCHHHHhhhhccccchhhhHH
Q psy1898 103 HIRLKIVE----MA-AAG--VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 103 ~~R~rIV~----l~-~~G--~s~~~IAr~lgVS~sTV~kwi 136 (230)
+.|.+|++ ++ +.| .|..+||+..|||++|+|+..
T Consensus 16 ~~r~~Il~aA~~lf~~~G~~~s~~~Ia~~agvs~~t~Y~~F 56 (199)
T 2rek_A 16 RNYDRIIEAAAAEVARHGADASLEEIARRAGVGSATLHRHF 56 (199)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCchHHHHHHC
Confidence 55677776 22 234 899999999999999999764
No 499
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=74.82 E-value=1.8 Score=33.70 Aligned_cols=34 Identities=9% Similarity=0.008 Sum_probs=26.9
Q ss_pred HHHHHHHHH----H-HcC---CCHHHHhhhhccccchhhhHH
Q psy1898 103 HIRLKIVEM----A-AAG---VRPCVISRQLRVSHGCVSKIL 136 (230)
Q Consensus 103 ~~R~rIV~l----~-~~G---~s~~~IAr~lgVS~sTV~kwi 136 (230)
+.|.+|++. + +.| .|..+||+..|||++|+|+..
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F 52 (216)
T 3f0c_A 11 GKLELIINAAQKRFAHYGLCKTTMNEIASDVGMGKASLYYYF 52 (216)
T ss_dssp CHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCHHHHHHHc
Confidence 567777762 2 345 899999999999999999864
No 500
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=74.78 E-value=2.5 Score=33.62 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=28.4
Q ss_pred HHHHHHHHH----HH-HcC---CCHHHHhhhhccccchhhhHHH
Q psy1898 102 NHIRLKIVE----MA-AAG---VRPCVISRQLRVSHGCVSKILN 137 (230)
Q Consensus 102 ~~~R~rIV~----l~-~~G---~s~~~IAr~lgVS~sTV~kwik 137 (230)
.+.|.+|++ ++ +.| .|..+||+..|||++|+|+...
T Consensus 39 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~ 82 (225)
T 2id3_A 39 ARIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYRRWG 82 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHHCC
Confidence 466777776 23 335 9999999999999999998754
Done!