RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1898
         (230 letters)



>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 123

 Score =  153 bits (389), Expect = 1e-48
 Identities = 98/122 (80%), Positives = 118/122 (96%), Gaps = 1/122 (0%)

Query: 86  GVNQLGGVFINGRPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQETGSI 145
            VNQLGGVFINGRPLPN+IRLKIVEMAA G+RPCVISRQLRVSHGCVSKILNRYQETGSI
Sbjct: 3   RVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSI 62

Query: 146 RPGVIGGSKPRVATPDVEKRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISR 205
           RPGVIGGSKPR+ATP++E RIEEYK+++PG+FSWEIR++L++ +G+CD+++APSVS+ISR
Sbjct: 63  RPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIR-EGVCDRSTAPSVSAISR 121

Query: 206 LL 207
           L+
Sbjct: 122 LV 123


>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 61

 Score =  108 bits (273), Expect = 6e-32
 Identities = 36/60 (60%), Positives = 50/60 (83%), Gaps = 1/60 (1%)

Query: 149 VIGGSKPRVATPDVEKRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLR 208
           VIGGSKP+VATP V ++I EYK+ NP +F+WEIRDRL+  + +CD ++ PSVSSI+R++R
Sbjct: 1   VIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA-ERVCDNDTVPSVSSINRIIR 59


>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 65

 Score =  104 bits (262), Expect = 4e-30
 Identities = 35/59 (59%), Positives = 47/59 (79%), Gaps = 1/59 (1%)

Query: 151 GGSKPRVATPDVEKRIEEYKKTNPGIFSWEIRDRLVKQDGICDKNSAPSVSSISRLLRG 209
           GGSKPRVATP+V  +I +YK+  P IF+WEIRDRL+  +G+C  ++ PSVSSI+R+LR 
Sbjct: 1   GGSKPRVATPEVVSKIAQYKQECPSIFAWEIRDRLLS-EGVCTNDNIPSVSSINRVLRN 58


>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 63

 Score = 98.2 bits (245), Expect = 1e-27
 Identities = 50/63 (79%), Positives = 56/63 (88%)

Query: 86  GVNQLGGVFINGRPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQETGSI 145
           GVNQLGGVF+NGRPLP+ +R +IVE+A  GVRPC ISRQLRVSHGCVSKIL RY ETGSI
Sbjct: 1   GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSI 60

Query: 146 RPG 148
           +PG
Sbjct: 61  KPG 63


>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal
           domain) {Escherichia coli [TaxId: 562]}
          Length = 43

 Score = 25.4 bits (56), Expect = 0.99
 Identities = 8/33 (24%), Positives = 17/33 (51%)

Query: 105 RLKIVEMAAAGVRPCVISRQLRVSHGCVSKILN 137
           R  ++ M   G+    IS+ + ++   V K++N
Sbjct: 8   RDAVLNMWQQGLGASHISKTMNIARSTVYKVIN 40


>d1u1ha2 c.1.22.2 (A:396-760)
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase MetE {Thale cress (Arabidopsis
           thaliana) [TaxId: 3702]}
          Length = 365

 Score = 27.4 bits (60), Expect = 1.4
 Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 145 IRPGVIGGSKPRVATPD-VEKRIEEYKK 171
           I PGV     PR+ + + +  R+ +   
Sbjct: 298 IGPGVYDIHSPRIPSSEEIADRVNKMLA 325


>d1u8va1 a.29.3.1 (A:276-490) 4-hydroxybutyryl-CoA dehydratase
          AbfD, C-terminal domain {Clostridium aminobutyricum
          [TaxId: 33953]}
          Length = 215

 Score = 26.7 bits (59), Expect = 1.9
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 7/49 (14%)

Query: 15 NGRPLPNHIRLKIVEMA-------AAGRGSSCQGRMNQLGGVFINGRPL 56
          NG    +H++ K++EM          G   S +G     G   I+    
Sbjct: 43 NGAQKASHVKDKLIEMTHLNETLYCCGIACSAEGYPTAAGNYQIDLLLA 91


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.140    0.419 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 895,173
Number of extensions: 43068
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 14
Length of query: 230
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,281,736
Effective search space: 189696928
Effective search space used: 189696928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)