BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy19
(494 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|340710747|ref|XP_003393947.1| PREDICTED: THUMP domain-containing protein 3-like [Bombus
terrestris]
Length = 441
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 166/469 (35%), Positives = 258/469 (55%), Gaps = 55/469 (11%)
Query: 2 DLHKLVSTAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDI 61
+L KL + + + I T+ TGFE V+EC+EK K++ ++K G+++FN+
Sbjct: 8 NLRKLFIESLASDNVFIIATTIDTGFEWQAVDECKEKLDKNVKIVKERGKIYFNVYWSQF 67
Query: 62 EKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEID 121
+V+E+R IDN+ +I+A F FS E D L KD + + ++
Sbjct: 68 AQVQEMRSIDNV-YIVADVRKFEFSGNSKEADL------QLFKDAVHN---------DMK 111
Query: 122 WKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQ 181
+K + WK IT + G +YP+ +++N + K C T V +
Sbjct: 112 LEKALNTWKSITGFRGKIYPTTDEYN---------------VAEKDRKLCNT--TVTPIT 154
Query: 182 IEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAF 241
+ KG + Q+ + E+ +L++RVTC R GKHT S E RA
Sbjct: 155 V-KGRKRGQDPSD-----------------TKEDEILRYRVTCERTGKHTFGSAEVARAI 196
Query: 242 GGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAY 301
GG+L D Y WLVDL Y +++ ++ NE L +T S H RNI+ F TTL+ T++Y
Sbjct: 197 GGELQDKYLWLVDLSTYYLEVVCKVIDNELITQLRITHESKHHRNIICFGPTTLRATVSY 256
Query: 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGN 361
N++RLA P PGD+ +DPMCG G+IP+E +L Y ++ + GD + K V T++N+ +S
Sbjct: 257 NLLRLAHPNPGDIIIDPMCGSGSIPIEAALVYSQSYIIGGDNHPKAVHNTKSNIEASSS- 315
Query: 362 LNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRP 421
+ K+ L NV QL FK + VD IVTD+PFGKR G +N +LY+ FLIE+G+I++P
Sbjct: 316 ---KCKIDLLHWNVSQLPFKDSFVDIIVTDMPFGKRSGRMIDNRILYKQFLIELGRIMKP 372
Query: 422 QIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRT 470
GR++LLT DR+ L AL L+ K + +N+ G+++ V++L RT
Sbjct: 373 LKGRSVLLTYDRRSLSMALQAAGDLFYVTKTLSVNIGGLQAAVYVLKRT 421
>gi|350406156|ref|XP_003487676.1| PREDICTED: THUMP domain-containing protein 3-like [Bombus
impatiens]
Length = 441
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 168/469 (35%), Positives = 256/469 (54%), Gaps = 55/469 (11%)
Query: 2 DLHKLVSTAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDI 61
+L KL + ++ I TV TGFE V+EC+EK K++ ++K G+++FN+
Sbjct: 8 NLRKLFIESLENDNVFIIATTVDTGFEWQAVDECKEKLDKNVKVVKERGKIYFNVYWSQF 67
Query: 62 EKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEID 121
+V+E+R IDN+ +I+A F FS E D L KD + + ++
Sbjct: 68 AQVQEMRSIDNV-YIVADVRKFEFSGNSKEADL------QLFKDAVHN---------DMK 111
Query: 122 WKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQ 181
+K + WK IT + G +YP+ +++N I K C V +
Sbjct: 112 LEKALNAWKSITGFQGKIYPTTDEYN---------------IAEKDRKLCNI--TVTPIT 154
Query: 182 IEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAF 241
+ KG + Q+ + E+ +L++RVTC R GKHT S E RA
Sbjct: 155 V-KGRKRGQDPSD-----------------TKEDEILRYRVTCERTGKHTFESAEVARAI 196
Query: 242 GGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAY 301
GG+L D Y WLVDL Y +++ ++ NE L +T S H RNI+ F TTL+ T+ Y
Sbjct: 197 GGELQDKYLWLVDLSTYYLEVVCKVIDNELITQLRITHESKHHRNIMCFGPTTLRATVCY 256
Query: 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGN 361
N++RLA P PGD+ +DPMCG G+IP+E +L Y ++ + GD + K V T++N+ +S
Sbjct: 257 NLLRLAHPNPGDIIIDPMCGSGSIPIEAALVYSQSYIIGGDNHPKAVHNTKSNIEASSS- 315
Query: 362 LNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRP 421
E K+ L NV QL FK + VD IVTD+PFGKR G +N +LY+ FLIE+G+I++P
Sbjct: 316 ---ECKIDLLHWNVSQLPFKDSFVDIIVTDMPFGKRSGRMMDNRILYKQFLIELGRIMKP 372
Query: 422 QIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRT 470
GR++LLT DR+ L AL L+ K + +N+ G+++ V++L RT
Sbjct: 373 LRGRSVLLTYDRRSLSMALQAAGDLFYVTKTLGVNIGGLQAAVYVLKRT 421
>gi|307183569|gb|EFN70311.1| THUMP domain-containing protein 3 [Camponotus floridanus]
Length = 478
Score = 291 bits (744), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 166/455 (36%), Positives = 260/455 (57%), Gaps = 38/455 (8%)
Query: 19 IEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIA 78
I TV TGFE ++EC+EK GKD+ ++K GR++FNI+ KV+++R IDN+ FI+
Sbjct: 25 IGTTVDTGFEWEAIDECKEKLGKDVQVVKQRGRIYFNINWDQFAKVQQMRSIDNV-FIVV 83
Query: 79 TFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKV---LEIDWKKYMEIWKQITNY 135
F+N DK D+ +I N + L+ W+K ++ WK T +
Sbjct: 84 DIGRLSFTN-----------------DKETDLKSIYNYIVSNLDKRWEKTLDAWKCATRF 126
Query: 136 NGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQELKEI 195
G LYP++E++ + K+ EI+ +E E + N+ +EK +++N+ K
Sbjct: 127 MGKLYPTVEEYITAKEQALVTKAETLEIH-DEEKGGEPDLLEQNI-LEKKEIENKGKKRG 184
Query: 196 DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDL 255
S + E ++L++RVTC R GKH S + R G + D Y W+V+L
Sbjct: 185 QDPS-----------ESKESDILRYRVTCERTGKHVFESKDIARITGEVVQDKYHWIVNL 233
Query: 256 DDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVF 315
Y +++ ++ + L VT S HRRNI F TTL+ TI YN++RLA+P PGD+
Sbjct: 234 TKYHLEVICKLMDDLLITHLRVTHESKHRRNIASFGPTTLRSTICYNLLRLANPKPGDII 293
Query: 316 LDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV 375
+DPMCGGG+IPVE +L+YP ++ +CGD N + V +T++N+ ++ K+ +
Sbjct: 294 IDPMCGGGSIPVEATLAYPCSYVLCGDNNSRAVERTKSNMNASTAG----CKIDLIQWTA 349
Query: 376 RQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
+L FK + +D IVTD+PFGKR G+KS N LY+ FL+E+G+IV+ GR +LLT DR
Sbjct: 350 SKLPFKDSFIDIIVTDMPFGKRSGNKSYNKTLYKQFLLELGRIVKLSYGRLVLLTYDRYS 409
Query: 436 LIQALHITSALWKCRKQIKINMSGMKSFVFILNRT 470
+AL L+ K I +N+ G+++ V++LNRT
Sbjct: 410 FKEALQAAGDLFWVTKTIGVNIGGLQAVVYVLNRT 444
>gi|242017902|ref|XP_002429423.1| F-box/LRR-repeat protein, putative [Pediculus humanus corporis]
gi|212514349|gb|EEB16685.1| F-box/LRR-repeat protein, putative [Pediculus humanus corporis]
Length = 967
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 165/475 (34%), Positives = 266/475 (56%), Gaps = 34/475 (7%)
Query: 6 LVSTAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVK 65
L+ +++ ++T EA+V TG E ++E EKFGK++ S GRVFFN + K
Sbjct: 415 LLELSKNHFTKLTFEASVTTGLEQTALDELFEKFGKNIKACFSRGRVFFNTKFDKYQSYK 474
Query: 66 ELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKY 125
LR +D + ++A F +N L+ K KD+ I+N V DW+K
Sbjct: 475 LLRSVDRV-NVLAGFTTVSLNND--------------LQLKSKDLDEIKNTVKVFDWEKV 519
Query: 126 MEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIE-- 183
+ IW++I ++G LYP+ +Q+ +++ N +I ++ + E N ++E
Sbjct: 520 IAIWQEIEGFDGNLYPTRKQY---------ERASSNNFSITEDQASEKSDDSENDEVEFK 570
Query: 184 --KGDLQNQEL-KEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESER 239
K + +L K +D S N + + +FRVTCNRVG KHT +S E+
Sbjct: 571 CEKVFFEKTQLEKALDSVLTLSDDENNITVNNNDNKIPRFRVTCNRVGEKHTFSSQEAAT 630
Query: 240 AFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTI 299
AFGG L D + W+VDL YDI+I L++ + Y G+ + + S H RNI F +TTL+ TI
Sbjct: 631 AFGGLLQDKFNWIVDLSHYDIEIILEVNNEDVYAGVALNKKSNHFRNITFFGLTTLRATI 690
Query: 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNS 359
YN++RL + PGD+ +DPMCG G IP+E +LS+P+ +F+ GDI++K +KT+ N+
Sbjct: 691 CYNLLRLCNVKPGDIVVDPMCGCGAIPIEGTLSFPNAYFLGGDIHDKAAVKTRCNI---- 746
Query: 360 GNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIV 419
L + LK+ L + +L + +D V+D PFGKR G+K+NN L++ L ++ +++
Sbjct: 747 NALEKNLKIDNLKWDSTRLPLRTNSIDVFVSDFPFGKRCGTKANNKALFKNALNDLARVL 806
Query: 420 RPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
+ + GR ++LT+D+ A +T WK RK IN+ G++S F+L RT + F
Sbjct: 807 KKKSGRCVILTADKTSFNVAYQLTKTFWKLRKNFIINIGGIRSSCFVLERTEEEF 861
>gi|383850804|ref|XP_003700964.1| PREDICTED: THUMP domain-containing protein 3-like [Megachile
rotundata]
Length = 442
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 162/474 (34%), Positives = 254/474 (53%), Gaps = 55/474 (11%)
Query: 2 DLHKLVSTAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDI 61
DL KL + +++ I TV TGFE ++EC+E K++ ++K G++F NI
Sbjct: 6 DLQKLFYESLNNDNVFMIAMTVDTGFEWQAIDECKEILDKNVKIIKERGKIFVNICWNQF 65
Query: 62 EKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEID 121
+++E+R IDNI FI+A F F E D L+KD + + ++
Sbjct: 66 AQIQEMRSIDNI-FIVADVRKFEFVGTTKETDL------QLIKDSVNNGMKLE------- 111
Query: 122 WKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQ 181
K + WK +T + G +YP+ E++ + + + + + P V+
Sbjct: 112 --KCLNAWKSVTAFRGKIYPTSEEYT----LAQSNRKLEDRTIF---------PATQRVK 156
Query: 182 IEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAF 241
D N + E+ +L++RVTC R GKHT S + RA
Sbjct: 157 KRGQDPSNAK----------------------EDEILRYRVTCERTGKHTFESADVARAI 194
Query: 242 GGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAY 301
GG+L D Y WLVDL Y +++ ++ NE L VT S HRRNI F TTL+ TI Y
Sbjct: 195 GGELQDKYLWLVDLSAYYLEVVCKVTNNELVTQLRVTHESKHRRNITCFGPTTLRATICY 254
Query: 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGN 361
N++RL P PGDV +DPMCGGG+IP+E +L Y ++ + GD + K + +T++NV +
Sbjct: 255 NLLRLTHPNPGDVIIDPMCGGGSIPIEATLVYTQSYVLGGDNHPKAIARTKSNVDTSCT- 313
Query: 362 LNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRP 421
+ K+ + +V+QL K +CVD ++TD+PFGKR G +N +LY+ FLIE+G+I++P
Sbjct: 314 ---KCKIDLMHWSVQQLPLKDSCVDIVITDMPFGKRSGRMIDNRILYKQFLIELGRIMKP 370
Query: 422 QIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLFD 475
GRA LLT DR+ AL L++ K + +N+ G+++ V++L RT +D
Sbjct: 371 STGRAALLTYDRRSFNTALQSAGDLFRVTKMLGVNIGGLQAAVYVLKRTDTAYD 424
>gi|380014807|ref|XP_003691408.1| PREDICTED: THUMP domain-containing protein 3-like, partial [Apis
florea]
Length = 435
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 171/470 (36%), Positives = 256/470 (54%), Gaps = 55/470 (11%)
Query: 1 MDLHKLVSTAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKD 60
M+L KL + ++ + TV TGFE ++EC+EK GK++ ++K G+++FNI
Sbjct: 8 MNLQKLFLESSLNDNVFMVATTVDTGFEWQAIDECKEKLGKNVTIIKERGKIYFNIYWNQ 67
Query: 61 IEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEI 120
+++E+R IDN +FI+A F FS G E DL +L A N LE
Sbjct: 68 FVQIQEMRSIDN-MFIVADVSKFEFS--------GNSKEMDL---QLFKSAVHNNMKLE- 114
Query: 121 DWKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNV 180
K ++IWK +T + G +YP+I+++N LR K C T +
Sbjct: 115 ---KALDIWKHVTGFQGKIYPTIDEYN-----LRKKDY----------KLCNT---IVAP 153
Query: 181 QIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERA 240
I KG + Q + E+ +L++RVTC R GKH S + R
Sbjct: 154 TIPKGKKRGQNPSDAK-----------------EDEILRYRVTCERTGKHIFESSDVARI 196
Query: 241 FGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIA 300
GG+L D Y WLVDL Y ++I ++ NE L VT S H RNI+ F TTL+ T+
Sbjct: 197 IGGELQDKYLWLVDLSAYYLEIVCKLINNELVTQLRVTHESKHHRNIMCFGPTTLRATVC 256
Query: 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSG 360
YN++RLA P PGD+ +DPMCG G+IPVE +L Y ++ + GD + K V +T++N+ +S
Sbjct: 257 YNLLRLAHPNPGDIIIDPMCGSGSIPVEATLVYFKSYVIGGDNHPKAVCRTKSNIEASSS 316
Query: 361 NLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVR 420
+ K+ L NV QL FK + +D VTD+PFGKR G +N +LY+ FLIE+G+I++
Sbjct: 317 ----KCKIDLLHWNVSQLPFKNSFIDIAVTDMPFGKRSGRIMDNRILYKQFLIELGRIIK 372
Query: 421 PQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRT 470
GR +LLT DR+ AL L+ K + +N+ G+++ V++L RT
Sbjct: 373 LLTGRIVLLTYDRRSFNMALQAAGDLFYVTKTLGVNIGGLQAAVYVLKRT 422
>gi|213512589|ref|NP_001135122.1| THUMP domain-containing protein 3 [Salmo salar]
gi|209156010|gb|ACI34237.1| THUMP domain-containing protein 3 [Salmo salar]
Length = 519
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 255/488 (52%), Gaps = 33/488 (6%)
Query: 17 ITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFI 76
+TI ATV TGFE+ EE QEK G D + K GR++F I + +V LR +DN+ +
Sbjct: 36 VTIGATVPTGFENTAAEEVQEKIGADATISKDRGRIYFQITTDKLSQVHHLRSVDNLFVV 95
Query: 77 IATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYN 136
+ ++N+ F D ++ L+D+ + +K + W +++WK T+
Sbjct: 96 VEEYDNYQFK--------------DSKEETLEDLQKLASK---LPWTNALKVWKLNTSLK 138
Query: 137 GVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQ------ 190
P + R ++ R+ K+ + +IEK L+ Q
Sbjct: 139 KKRGPH-RRPQGPKGKGRRGRNFRDRGKANKDDVETDTMETVTAEIEKLQLEPQAPTTGQ 197
Query: 191 ---ELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFGGKLN 246
E D+ + + Q+ P +LKFRVTC+R G KH+ +S E+ R FGG +
Sbjct: 198 GVGEAGSPDLENSPLGEQQEVEGQEPVPKVLKFRVTCSRAGDKHSFSSNEAARDFGGAVQ 257
Query: 247 DTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRL 306
D + W D+ +DI++ L I E +G+ +T+ SLHRRNI F TTL+ T+ Y M+RL
Sbjct: 258 DFFLWKADMTKFDIEVLLNIHNVEVVIGIALTEESLHRRNITHFGPTTLRSTLCYGMLRL 317
Query: 307 ASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH-NSGNLNRE 365
+ P DV LDPMCG G IP+E ++ + F++ GD N+ V +T N+ H L++
Sbjct: 318 SKPQASDVILDPMCGTGAIPLEGAIEWQQAFYLAGDNNDMAVSRTVNNICHIQKKRLDKS 377
Query: 366 ----LKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRP 421
L + + ++ L + + VD I+TD+PFGKR+GS+ NN+ LY L E+ ++ RP
Sbjct: 378 STPGLPIDTVQWDLCHLPMRTSSVDIIITDMPFGKRMGSRKNNWDLYPPCLREMARVSRP 437
Query: 422 QIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLFDYAIHGL 481
G+A++LT D+K +A+ LW+ + +N+ G+ + VF+L RTA +F +
Sbjct: 438 GSGKAVILTQDKKCFQKAISRMGGLWRKHHTVWVNVGGLHAGVFLLKRTAGIFGQTPEDV 497
Query: 482 KEKHKGKP 489
+E + +P
Sbjct: 498 REPLEEQP 505
>gi|313747477|ref|NP_001186418.1| THUMP domain containing 3 [Xenopus (Silurana) tropicalis]
Length = 490
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 166/489 (33%), Positives = 256/489 (52%), Gaps = 37/489 (7%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
A ++ +TI ATV TGFE E +EK G + K G+++F+I + +V LR
Sbjct: 27 ANLEDAHVTIGATVPTGFEFTAAAEVEEKLGCPCKISKDRGKIYFDIKKDRLAQVHRLRS 86
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ I+ F +F F K T+ED+ LKD+ + K + W+ + W
Sbjct: 87 VDNLFVIVKEFSDFPF--KETKEDA------------LKDLGDLAEK---LPWESALSAW 129
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQN 189
+ N + + Y + + N+I+ + + S +T P + +G
Sbjct: 130 EL---NNSLKKRKKRKKPGYPGKEKKQPVTVNKISEEMQDSPKTLPS----SVAEGQGTQ 182
Query: 190 QELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFGGKLNDT 248
KE D ++ T N+LKFRVTCNR G KH+ TS ++ R FGG + +
Sbjct: 183 NPDKEADTPPDSEGKDNGTA----SGNVLKFRVTCNRAGDKHSFTSNDAARDFGGAVQEH 238
Query: 249 YFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLAS 308
+ W D+ ++D+++ L I YNE VG+ +T+ SLHRRNI F TTL+ T+AY M+RL
Sbjct: 239 FQWKADMTNFDVEVLLNISYNEMVVGIALTEESLHRRNITHFGPTTLRSTLAYGMLRLCD 298
Query: 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVL-----HNSG-NL 362
P DV +DPMCG G IP+E +P +FF+ GD N++ V +T +N+ H S +
Sbjct: 299 LQPSDVIIDPMCGTGAIPIEGVSEWPGSFFLAGDNNKQAVNRTGSNIQSLLRKHQSPESA 358
Query: 363 NRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQ 422
L++ + ++ L + VD IVTD+PFGKR+GSK N+ LY L E+ ++ R
Sbjct: 359 PSNLRIDAVHWDISSLPLRDGSVDVIVTDMPFGKRMGSKKKNWDLYPACLREMSRVCRAG 418
Query: 423 IGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLFDYAIHGLK 482
GRA+LLT DRK I+AL LW+ + +N+ G+ + V++L RT+ FD +
Sbjct: 419 TGRAVLLTHDRKCFIKALAKAGHLWRKVHTVWVNIGGLHAGVYLLKRTS--FDSTKETQR 476
Query: 483 EKHKGKPFP 491
E P P
Sbjct: 477 ESQLADPAP 485
>gi|327280382|ref|XP_003224931.1| PREDICTED: THUMP domain-containing protein 3-like [Anolis
carolinensis]
Length = 507
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 164/476 (34%), Positives = 258/476 (54%), Gaps = 37/476 (7%)
Query: 17 ITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFI 76
+TI ATV TGFE +E QEK G + K G+++F I + +V +LR +DN+ +
Sbjct: 40 VTIGATVPTGFEATAADEVQEKLGSKSRISKDRGKIYFEIPAIRLPQVHQLRSVDNLFVV 99
Query: 77 IATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYN 136
+ F+++ F K T+ED+ LKD L+D+A ++ W +E+WK TN
Sbjct: 100 VQEFKDYQF--KETKEDA--------LKD-LEDLAK------KLPWTDALEVWKLNTNLK 142
Query: 137 GVLYPSI---EQFNKYNDILRH----KKSIRNEINIKKESSCET-EPQVNNVQIEK---- 184
+Q N + + ++++ E++ ++S E E Q + EK
Sbjct: 143 KRKTRRKRGNQQGNSKKEKPKEDGCEQEAVGKEMDDPVQNSLEAAEIQDSECTDEKVPLD 202
Query: 185 GDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFGG 243
D Q+ +E+ N ++ + + LKFRVTCNR G KH+ S E+ R FGG
Sbjct: 203 EDEQSDPKEELASNDENKNELEDCKKCEMDSETLKFRVTCNRAGDKHSFKSNEAARDFGG 262
Query: 244 KLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNM 303
+ D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY M
Sbjct: 263 AVQDFFQWKADMTNFDVEVLLNIHNNEVVVGIALTEESLHRRNITHFGPTTLRSTLAYGM 322
Query: 304 VRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN-------VL 356
+RL P P D+ +DPMCG G IP+E + +P+ + + GD N + V +T N +
Sbjct: 323 LRLCDPQPADIIIDPMCGTGAIPIEGAAEWPNCYHIAGDNNPQAVKRTANNISSLLKQIR 382
Query: 357 HNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIG 416
+++ + + + L + VD IVTD+PFGKR+GSK N+ LY L+E+G
Sbjct: 383 SKESSISAGKPIDSIQWDSCSLPLRTGSVDVIVTDMPFGKRIGSKKKNWDLYPSCLMEMG 442
Query: 417 KIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTAD 472
+I RP+ GRA+LLT DRK +AL LW+ I +N+ G+ + V++L RTA+
Sbjct: 443 RICRPKTGRAVLLTQDRKCFAKALSKMGHLWRKSHTIWVNVGGLHAAVYLLKRTAE 498
>gi|332026183|gb|EGI66325.1| THUMP domain-containing protein 3 [Acromyrmex echinatior]
Length = 420
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 164/433 (37%), Positives = 255/433 (58%), Gaps = 37/433 (8%)
Query: 3 LHKLVSTAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIE 62
+ +L S + +++K TI TV TGFE ++EC+EK GKD+ +++ GR++FNID +
Sbjct: 7 VSQLFSESVANDKIFTIGVTVDTGFEWEAIDECKEKLGKDVRVIRQRGRIYFNIDWDEFP 66
Query: 63 KVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDW 122
KV+E+R ID+I FI+A N F+N ESDLL + ++ + N + W
Sbjct: 67 KVQEMRSIDHI-FIVADNGNLSFNNDK---------ESDLLHIRSYNLDILSNS--DKIW 114
Query: 123 KKYMEIWKQITNYNGVLYPSIEQF--NKYNDILRHKKSIRNEINIKKESSCETEPQVNNV 180
KK +E WK T++ G LYP+ E++ K D++ K + N +KE + V+ +
Sbjct: 115 KKTLEAWKCATSFKGKLYPTTEEYVEAKKEDLVA-KTEMLEMRNKEKEEKDPYDWNVSEM 173
Query: 181 QIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERA 240
+ EKG + Q+ S++Q E ++LK+RVTC R GKH V S + R
Sbjct: 174 KEEKGKKRGQD----------PSKSQ-------ENDVLKYRVTCERNGKHAVESKDVARV 216
Query: 241 FGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIA 300
G L D + WLVDL Y ++I ++ ++ L VT S H RNIV F TTL+ TI
Sbjct: 217 IGEVLQDKFHWLVDLSMYHLEILCKLVNDQLITHLRVTHKSKHHRNIVNFGPTTLRSTIC 276
Query: 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSG 360
YN+++LA+P GD+ +DPMCGGG+IP+E +L++PH++ +CGD + + + +T++N+ ++
Sbjct: 277 YNLLKLANPKLGDIIVDPMCGGGSIPIEATLAFPHSYVLCGDNDSRAIDRTKSNMDASAI 336
Query: 361 NLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVR 420
K+ + +L FK + VD IVTD+PFGKR G+K N + Y+ FL+E G+IV+
Sbjct: 337 T----CKIDLVQWTASKLPFKDSFVDIIVTDMPFGKRSGNKFYNKIFYKKFLLEFGRIVK 392
Query: 421 PQIGRAILLTSDR 433
GR +LLT DR
Sbjct: 393 LN-GRIVLLTYDR 404
>gi|328786341|ref|XP_394352.4| PREDICTED: THUMP domain-containing protein 3-like [Apis mellifera]
Length = 441
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 165/472 (34%), Positives = 250/472 (52%), Gaps = 63/472 (13%)
Query: 3 LHKLVSTAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIE 62
L +L + ++ I TV TGFE ++EC+EK K++ ++K G+++FNI
Sbjct: 9 LRQLFLESSLNDNVFMIATTVDTGFEWQAIDECKEKLDKNVKVVKERGKIYFNIYWNQFV 68
Query: 63 KVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDW 122
+++E+R IDN +FI+A F FS G E DL +L A N LE
Sbjct: 69 QIQEMRSIDN-MFIVADVSKFEFS--------GNNKEMDL---QLFKNAVHNNMKLE--- 113
Query: 123 KKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQI 182
K ++ WK +T + G +YP+ +++N
Sbjct: 114 -KTLDFWKHVTGFQGKIYPTTDEYN----------------------------------- 137
Query: 183 EKGDLQNQELKEIDINSMCSSQNQKTNFTNP----EENLLKFRVTCNRVGKHTVTSMESE 238
L ++ K +I ++ K NP E+ +L++RVTC R GKH S +
Sbjct: 138 ----LAEKDHKLCNITVAPTTPKGKKRGQNPSNAKEDEILRYRVTCERTGKHIFESSDVA 193
Query: 239 RAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPT 298
R GG+L D Y WLVDL Y ++I ++ NE L VT S H RNI+ F TTL+ T
Sbjct: 194 RTIGGELQDKYLWLVDLSTYYLEIVCKLINNELVTQLRVTHESKHHRNIMCFGPTTLRAT 253
Query: 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN 358
I YN++RLA P PGD+ +DPMCG G+IP+E +L Y ++ + GD + K V +T++N+ +
Sbjct: 254 ICYNLLRLAHPKPGDIIIDPMCGSGSIPIEATLVYFKSYVIGGDNHPKAVHRTKSNIEAS 313
Query: 359 SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKI 418
S + K+ L NV QL FK + +D VTD+PFGKR G +N +LY+ FLIE+G+I
Sbjct: 314 SS----KCKIDLLHWNVSQLPFKDSFIDIAVTDMPFGKRSGRIMDNRILYKQFLIELGRI 369
Query: 419 VRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRT 470
++ GR +LLT DR+ AL L+ K + IN+ G+++ V++L RT
Sbjct: 370 IKVLTGRIVLLTYDRRSFNMALQAAGDLFYVTKTLGINIGGLQAAVYVLKRT 421
>gi|417401977|gb|JAA47852.1| Putative rna methylase [Desmodus rotundus]
Length = 502
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 163/493 (33%), Positives = 264/493 (53%), Gaps = 34/493 (6%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ ++TI ATV TGFE +E +EK + K G+++F+I L+ + +V LR
Sbjct: 32 SESEHLRVTIGATVPTGFEQTAADEVREKLRSSCKISKDRGKIYFDISLESLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ LKD + K + W +++W
Sbjct: 92 VDNLFVVVQEFKDYQF--KETKEEV------------LKDFEELAGK---LSWSDPLKVW 134
Query: 130 KQITNYNGVLYPS--IEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDL 187
K TN+ I Q + I + NE ++KKE + EK +
Sbjct: 135 KINTNFKKKKTKRKKINQSSSKEKIDNGQGDKGNEKDVKKELTNNASDSHILDYYEKPAI 194
Query: 188 QNQELKEIDINSMCSSQNQKTNFTNPEENL--LKFRVTCNRVG-KHTVTSMESERAFGGK 244
+ +E+ + + + S +++ + E +L LKFRVTCNR G KH +S E+ R FGG
Sbjct: 195 K-EEISTLVGDDLASCKDETDESSKEETSLEVLKFRVTCNRAGEKHCFSSNEAARDFGGA 253
Query: 245 LNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMV 304
+ D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY M+
Sbjct: 254 VQDYFKWKADMTNFDVEVLLNIHDNEIIVGIALTEESLHRRNITHFGPTTLRSTLAYGML 313
Query: 305 RLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN------ 358
RL +P P D+ +DPMCG G IP+E + + H F + GD N L + AN + +
Sbjct: 314 RLCAPQPTDIIVDPMCGTGAIPIEGATEWSHCFHIAGD-NNPLAVNRAANNISSLLTKSQ 372
Query: 359 -SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGK 417
G L+ L + + ++ L + VD IVTD+PFGKR+GSK N+ LY L E+ +
Sbjct: 373 IKGKLSWGLPIDAIQWDICNLPLRTGSVDIIVTDMPFGKRMGSKKRNWNLYPACLSEMSR 432
Query: 418 IVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLFDYA 477
+ RP+ GRA LLT D+K +AL +W+ + +N+ G+ + V++L RT F
Sbjct: 433 VCRPRTGRAALLTQDKKCFTKALSGMGHVWQKVHTVWVNIGGLHAAVYLLRRTPQAF--- 489
Query: 478 IHGLKEKHKGKPF 490
+H + +G P+
Sbjct: 490 VHSSEGGARGTPW 502
>gi|387019139|gb|AFJ51687.1| THUMP domain-containing protein 3-like [Crotalus adamanteus]
Length = 502
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 165/481 (34%), Positives = 255/481 (53%), Gaps = 44/481 (9%)
Query: 17 ITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFI 76
ITI AT+ TGFE +E QEK G + K G+++F I + ++ KV +LR +DN+ +
Sbjct: 38 ITIGATIPTGFELTAADEVQEKLGSKSRISKGRGKIYFEIPVINLPKVHQLRSVDNLFVV 97
Query: 77 IATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYN 136
+ F+++ F K T+E++ KD DL+KD + W +E+WK N
Sbjct: 98 VQEFKDYQF--KETKEEA-LKDLEDLVKD--------------LPWTNSLEVWK----LN 136
Query: 137 GVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNN---------------VQ 181
L + NK N H K + + N +E + E + N +
Sbjct: 137 SSLKKRKTRRNKGNH-QGHAKKEKLDKNKNQEGNEELQTLAQNDFKSAEVPDPENADEIV 195
Query: 182 IEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERA 240
D Q++ +E+ N +++ E LKFRVTCNR G H S E+ R
Sbjct: 196 PSDDDKQSEPREELTSNGDNKNESGDGKKQEMEAETLKFRVTCNRAGDNHNFKSDEAARD 255
Query: 241 FGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIA 300
FGG + D + W D+ ++DI++ L I NE VG+ +T+ SLHRRNI F TTL+ T+A
Sbjct: 256 FGGAVQDFFQWKADMTNFDIEVLLNIHNNEVIVGIALTEESLHRRNITHFGPTTLRSTLA 315
Query: 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANV----- 355
Y M+RL P P DV +DPMCG G IP+E +P+ + + GD + + V KT N+
Sbjct: 316 YGMLRLCDPQPADVIIDPMCGTGAIPIEGVTVWPNCYHIAGDNHLQAVKKTANNISSLLK 375
Query: 356 -LHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIE 414
+ + + + + + + + L + + VD IVTDLPFGKR+GSK N+ LY L+E
Sbjct: 376 QIQSKESTSTGIPIDSIQWDSCNLPLRSSSVDVIVTDLPFGKRMGSKKKNWNLYPSSLME 435
Query: 415 IGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
+ +I RP+ GRA+LLT DRK +AL LW+ I +N+ G+ + V++L RT+++
Sbjct: 436 MARICRPRTGRAVLLTEDRKCFAKALSKMGHLWEKSHTIWVNVGGLCAAVYLLKRTSEII 495
Query: 475 D 475
+
Sbjct: 496 E 496
>gi|432110863|gb|ELK34337.1| THUMP domain-containing protein 3 [Myotis davidii]
Length = 506
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 162/480 (33%), Positives = 261/480 (54%), Gaps = 31/480 (6%)
Query: 7 VSTAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKE 66
V ++S+ ++TI ATV TGFE V +E +EK + K G+++F+I ++ + +V
Sbjct: 29 VPRSESEHLRVTIGATVPTGFEQVAADEVREKLRSSCKISKDRGKIYFDISVESLAQVHR 88
Query: 67 LRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYM 126
LR +DN+ ++ ++F F K T+E LKD + K + W +
Sbjct: 89 LRSVDNLFVVVQELKDFQF--KETKEKV------------LKDFEELAGK---LPWSDPL 131
Query: 127 EIWKQITNYNGVLYPSIE-QFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKG 185
++WK T++ + N + + + R+E ++KKE S EK
Sbjct: 132 KVWKINTSFKKKKTKRKKLNQNLSKEKIDNGGDKRDERDVKKELSNNALDSHILDYYEKP 191
Query: 186 DLQNQELKEI--DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFG 242
++ +E+ + DI + C ++N +++ + E +LKFRVTCNR G KH +S E+ R FG
Sbjct: 192 AIK-EEISTLVGDILASCKNENDESSKEDTEPEVLKFRVTCNRAGEKHCFSSNEAARDFG 250
Query: 243 GKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYN 302
G + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY
Sbjct: 251 GAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNITHFGPTTLRSTLAYG 310
Query: 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN---- 358
M+RL +P P DV +DPMCG G IP+E + + + F + GD N L + AN + +
Sbjct: 311 MLRLCAPQPSDVIVDPMCGTGAIPIEGATEWSNCFHIAGD-NNPLAVNRAANNISSLLTK 369
Query: 359 ----SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIE 414
G L+ L + + ++ L + VD IVTD+PFGKR+GSK N+ LY L E
Sbjct: 370 SQIKEGKLSWGLPIDAIQWDICNLPLRTGSVDIIVTDMPFGKRMGSKKRNWNLYPACLWE 429
Query: 415 IGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
+ +I +P GRA LLT D+K +AL +W+ + +N+ G+ + V++LNRT F
Sbjct: 430 MSRICKPGTGRAALLTQDKKCFTKALSGMEHVWRKVHTVWVNIGGLHAAVYLLNRTPQAF 489
>gi|432857064|ref|XP_004068520.1| PREDICTED: THUMP domain-containing protein 3-like [Oryzias latipes]
Length = 479
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 157/481 (32%), Positives = 247/481 (51%), Gaps = 55/481 (11%)
Query: 6 LVSTAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVK 65
+++ + E +TI ATV TGFE EE QEK G D + + GR++F + + +V
Sbjct: 18 IMNASPDSELTVTIGATVPTGFEHTAAEEVQEKIGVDARISRDRGRIYFPVTTDKLSEVH 77
Query: 66 ELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKY 125
LR +DN+ ++ ++ + F + E L++ +Q ++ W
Sbjct: 78 HLRSVDNLFVVVKEYDQYHFK---------ESKEETLME--------LQELASKLPWTNA 120
Query: 126 MEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESS-----CETEPQVNNV 180
+E+WK N L+ KKS R N K C+ Q +
Sbjct: 121 LEVWK------------------LNRTLKKKKSHRKGGNATKAKPADTGVCDAAEQQESA 162
Query: 181 QIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESER 239
Q +L E D + S Q + T PE+ +KFRVTCNR G KH+ +S E+ R
Sbjct: 163 Q----ELSAAEGDTKDAPDVESHQQE----TAPEDKPVKFRVTCNRAGDKHSFSSNEAAR 214
Query: 240 AFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTI 299
FGG + + + W D+ +DI++ L I E VGL +T+ SLHRRNI F TTL+ T+
Sbjct: 215 DFGGAVQEFFQWKADMTKFDIEVLLNIHNEEMVVGLALTEESLHRRNISHFGPTTLRSTL 274
Query: 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH-- 357
Y M+RL P D+ LDPMCG G IP+E ++ + +F++ GD + V +T N+ H
Sbjct: 275 CYGMLRLCKLQPSDIVLDPMCGTGAIPLEGAIEFNSSFYIAGDNYDMAVNRTLNNICHIQ 334
Query: 358 ----NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLI 413
G + L + + ++ +L F+ + VD I+TD+PFGKR+GS+ N+ LY L
Sbjct: 335 KRRAEKGRPSPGLPIDTVQWDLCRLPFRASSVDVIITDMPFGKRMGSRKKNWDLYPSCLR 394
Query: 414 EIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADL 473
E+ ++ RP G+A+LLT D+K +A+ LWK + +N+ G+ + V++L RTA +
Sbjct: 395 EMARVCRPGSGKAVLLTQDKKCFSKAISRMGGLWKKLHTVWVNVGGLHAGVYLLKRTAGV 454
Query: 474 F 474
F
Sbjct: 455 F 455
>gi|348507567|ref|XP_003441327.1| PREDICTED: THUMP domain-containing protein 3-like [Oreochromis
niloticus]
Length = 495
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 156/465 (33%), Positives = 247/465 (53%), Gaps = 39/465 (8%)
Query: 17 ITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFI 76
+TI ATV TGFE EE +EK G + K GR++F I + +V LR +DN+ +
Sbjct: 36 VTIGATVPTGFEHTAAEEVKEKIGVAARISKDRGRIYFPITTDKLFQVHLLRSVDNLFVV 95
Query: 77 IATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYN 136
+ ++++ F Q E LL+ +Q ++ W +E+WK N
Sbjct: 96 VEEYDHYQFK---------QSKEETLLE--------LQQLASKLPWTNALEVWK----LN 134
Query: 137 GVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNV-QIEKGDLQNQELKEI 195
G L N ++ N + ++ +TE Q++ V +G L+ + +
Sbjct: 135 GTLKKKKGHRKGGNTT-----KVKPNRNTTEVAAADTEQQLHQVASAAEGQLEAESAADA 189
Query: 196 DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFGGKLNDTYFWLVD 254
+ C +Q+ PE ++KFRVTCNR G KH+ +S E+ R FGG + + + W D
Sbjct: 190 E---PCEQDSQEAA---PEAKVIKFRVTCNRAGDKHSFSSNEAARDFGGAVQEFFQWKAD 243
Query: 255 LDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDV 314
+ +DI++ L I E +G+ +T+ SLHRRNI F TTL+ T+ Y M+RL P DV
Sbjct: 244 MTKFDIEVLLNIHNEEMVIGIALTEESLHRRNISHFGPTTLRSTLCYGMLRLCKPQASDV 303
Query: 315 FLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374
LDPMCG G IP+E ++ + +F++ GD N+ V +T N+ H + ++S L +
Sbjct: 304 ILDPMCGTGAIPLEGAIEFSSSFYIAGDNNDMAVNRTVNNICHIQKRRADKDRISGLPID 363
Query: 375 VRQ--LCFKP---ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429
Q LC P + VD I+TD+PFGKR+GSK N+ LY L L E+ ++ RP G+A+LL
Sbjct: 364 TVQWDLCSLPIRTSSVDIIITDMPFGKRMGSKKKNWDLYPLCLREMARVCRPGSGKAVLL 423
Query: 430 TSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
T D+K +A+ LW+ + +N+ G+ + V++L RT +F
Sbjct: 424 TQDKKCFAKAISRMGGLWRKLHTVWVNVGGLHAGVYLLKRTGAVF 468
>gi|345323685|ref|XP_003430737.1| PREDICTED: THUMP domain-containing protein 3-like isoform 2
[Ornithorhynchus anatinus]
gi|345323687|ref|XP_001507132.2| PREDICTED: THUMP domain-containing protein 3-like isoform 1
[Ornithorhynchus anatinus]
Length = 503
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 162/481 (33%), Positives = 258/481 (53%), Gaps = 34/481 (7%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
+ S++ +TI ATV TGFE +E +EK + K G+++F I ++ + +V LR
Sbjct: 29 SSSEQLVVTIGATVPTGFEATAADEVREKLASRAKISKERGKIYFEISIEYLAQVHSLRS 88
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F ++ F K T+ED+ LKD + K + W +++W
Sbjct: 89 VDNLFVVVQEFRDYQF--KETKEDT------------LKDFKELAGK---LPWSDPLKVW 131
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQN 189
++ NY + + KS I IKK + E N+ + G+ Q+
Sbjct: 132 ERNINYKKKKTIRKKPQQHTPSQEKEAKSQGGPI-IKKGTEEELSQFTENLVLYSGESQS 190
Query: 190 QELKEI-----DINSMCSSQNQKTNFTNPEE---NLLKFRVTCNRVG-KHTVTSMESERA 240
+ +E D S + +K + T EE +LKFRVTCNR G KH TS E+ R
Sbjct: 191 KIPEESPSANKDEGPNTSEKEKKVDETQKEEAKTKVLKFRVTCNRAGDKHNFTSNEAARD 250
Query: 241 FGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIA 300
FGG + D + W D+ ++D+++ L I +E VG+ +T+ SLHRRNI+EF TTL+ T+A
Sbjct: 251 FGGAVQDYFNWKADMTNFDVEVLLNIHQSEIIVGIALTEESLHRRNIIEFGPTTLRSTLA 310
Query: 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH-NS 359
Y M+RL SP GDV +DPMCG G I +E +P+ + + GD N V + +N+ +
Sbjct: 311 YGMLRLCSPQLGDVIVDPMCGSGAISIEGICEWPNCYHIAGDNNPLAVKRASSNIWSLMT 370
Query: 360 GNLNRE------LKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLI 413
N +E L V + ++ L + + VD IV+D+PFGKR+GS+ N+ LY L
Sbjct: 371 RNSTKERKPTIGLPVDSIQWDICNLPLRTSSVDIIVSDMPFGKRIGSRKKNWDLYPFCLQ 430
Query: 414 EIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADL 473
E+ ++ +P GRA+LLT DRK I+AL +W+ + +N+ G+ + V++L RT +
Sbjct: 431 EMSRVCKPGTGRAVLLTQDRKCFIKALSKMCDVWRKVQTAWVNIGGLHAAVYLLKRTPQV 490
Query: 474 F 474
F
Sbjct: 491 F 491
>gi|126336383|ref|XP_001375174.1| PREDICTED: THUMP domain-containing protein 3-like [Monodelphis
domestica]
Length = 511
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 165/493 (33%), Positives = 263/493 (53%), Gaps = 48/493 (9%)
Query: 17 ITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFI 76
+TI ATV TGFE +E +EK G + K G+++F+I ++ + KV LR +DN+ +
Sbjct: 38 VTIGATVPTGFEQTAADEVREKLGSQSRISKDRGKIYFDISVESLSKVHGLRSVDNLFVV 97
Query: 77 IATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYN 136
+ F ++ F K T+ED +LKD +D+A ++ W +++WK T++
Sbjct: 98 VQEFRDYQF--KETKED--------VLKD-FEDLAG------KLPWSDPLKVWKINTSFK 140
Query: 137 GVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEK--GDLQNQE--- 191
+ + +I+ +K + +++ E + E QV N +E+ ++NQ+
Sbjct: 141 KKKTKRKKLTQQ--NIISKEKVDDEQGDLRAEKNVEE--QVTNYTMEEVLETIENQDGII 196
Query: 192 -----LKEIDINSMCSSQNQKTNFTN------PEENLLKFRVTCNRVGK-HTVTSMESER 239
L I S S +K N E +LKFRVTCNR G+ H+ TS E+ R
Sbjct: 197 DETPILAFSKIVSEIPSAIEKEKGLNESHKEEAESQVLKFRVTCNRAGENHSFTSNEAAR 256
Query: 240 AFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTI 299
FGG + D + W D+ ++D+++ L + NE VG+ +T+ SLHRRNI F TTL+ T+
Sbjct: 257 DFGGAVQDYFKWKADMTNFDVEVLLNVHNNEIVVGIALTEESLHRRNITHFGPTTLRSTL 316
Query: 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH-- 357
AY M+RL SP P D+ +DPMCG G IP+E + +P+ + + GD N V + N+L
Sbjct: 317 AYGMLRLCSPQPTDIIIDPMCGTGAIPIEGAAEWPNCYHIAGDNNPLAVKRAANNILSLL 376
Query: 358 -----NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFL 412
L + + ++ L + VD IVTD+PFGKR+GSK N+ LY L
Sbjct: 377 TKSQVKESKAFWGLPIDAIQWDICNLPLRTGSVDIIVTDMPFGKRIGSKKRNWNLYPSCL 436
Query: 413 IEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTAD 472
E+ ++ RP GRA+LLT DRK +AL +W+ + +N+ G+ + V++L RT
Sbjct: 437 QEMSRVCRPGTGRAVLLTQDRKCFAKALSSMGHVWRKVHTVWVNIGGLHAAVYLLKRTTQ 496
Query: 473 LFDYAIHGLKEKH 485
+F IH + +H
Sbjct: 497 VF---IHPAELQH 506
>gi|440896059|gb|ELR48096.1| THUMP domain-containing protein 3 [Bos grunniens mutus]
Length = 503
Score = 267 bits (683), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 163/496 (32%), Positives = 262/496 (52%), Gaps = 39/496 (7%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE +E +EK G + K G+++F+I + + +V LR
Sbjct: 32 SESEHLQVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDISVDSLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ LKD + K + W ++IW
Sbjct: 92 VDNLFVVVQEFKDYQF--KETKEEV------------LKDFEELAGK---LPWSDPLKIW 134
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQN 189
K T + + N N + + R + +KK+ E V++ QI +N
Sbjct: 135 KINTCFKKKKT-KRRKINP-NSSKQKIDNGRGDTTVKKDVKKELTNSVSDSQISDC-YEN 191
Query: 190 QELKEI------DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFG 242
+KE D + C + ++ + + +LKFRVTCNR G KH +S E+ R FG
Sbjct: 192 PAIKEQVSTLIGDGLTSCKDETEENSKEEADPEVLKFRVTCNRAGEKHCFSSNEAARDFG 251
Query: 243 GKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYN 302
G + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY
Sbjct: 252 GAVQDYFKWKADMTNFDVEVLLNIHDNEVVVGIALTEESLHRRNITHFGPTTLRSTLAYG 311
Query: 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN---- 358
M+RL +P P D+ +DPMCG G IP+E + + + + + GD N L + AN + +
Sbjct: 312 MLRLCAPQPTDIIVDPMCGTGAIPIEGATEWSNCYHIAGD-NNPLAVNRAANNISSLLTK 370
Query: 359 ----SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIE 414
G L L + + ++ L + VD IVTD+PFGKR+GSK N+ LY L E
Sbjct: 371 IQVKEGKLPLGLPIDTIQWDICNLPLRTGSVDIIVTDMPFGKRMGSKKRNWNLYPACLRE 430
Query: 415 IGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
+ ++ RP GRA+LLT D+K +AL LW+ + +N+ G+ + V++L RT F
Sbjct: 431 MSRVCRPGTGRAVLLTQDKKCFAKALSGMGHLWRKVHTVWVNIGGLHAAVYLLKRTPQSF 490
Query: 475 DYAIHGLKEKHKGKPF 490
+H +E + P+
Sbjct: 491 ---VHPSEEDGERCPW 503
>gi|118097096|ref|XP_414446.2| PREDICTED: THUMP domain-containing protein 3 isoform 2 [Gallus
gallus]
Length = 496
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 161/489 (32%), Positives = 252/489 (51%), Gaps = 50/489 (10%)
Query: 12 SDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGID 71
++E+ I ATV TGFE E QEK G + + G+++F + + + +V LR +D
Sbjct: 17 AEERVAVIGATVPTGFEVTAAAEVQEKLGSASRISRDRGKIYFEVPARSLPEVHRLRSVD 76
Query: 72 NILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWK- 130
N+ ++ F+++ F K T+ED+ KD DL+K ++ W ++IW+
Sbjct: 77 NLFVVVEEFKDYQF--KETKEDA-LKDLEDLVK--------------KLPWADPLKIWEL 119
Query: 131 ----------------QITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETE 174
Q T L E+ + + N + + E
Sbjct: 120 NNSLKKKKTKRKKQNLQRTASKEKLDDGGEEEKDHRAAGGQEDCAPNTAGAEPAADQSAE 179
Query: 175 P-QVNNVQIEKGDLQNQELK-EIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHT 231
Q Q E+ D + E K ++ +S ++ N + +LKFRVTCNR G KH+
Sbjct: 180 EMQGEASQNEEDDNEQSEAKNKLHASSGAETKAGDDNKDEGDAKVLKFRVTCNRAGDKHS 239
Query: 232 VTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFN 291
TS E+ R FGG + + + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F
Sbjct: 240 FTSNEAARDFGGAVQEHFQWKADMTNFDVEVLLNIHNNEVVVGIALTEESLHRRNITHFG 299
Query: 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKT 351
TTL+ T+AY M+RL P P D+ +DPMCG G IP+E ++ +P + + GD N + V +
Sbjct: 300 PTTLRSTLAYGMLRLCDPQPTDIIVDPMCGTGAIPIEGAMEWPGCYHIAGDNNPQAVKRA 359
Query: 352 QANVLH-NSGNLNRELKVS---PL------VCNVRQLCFKPACVDGIVTDLPFGKRVGSK 401
+N+ N N+E S PL +CN L + VD IVTD+PFGKR+GSK
Sbjct: 360 ASNICSLLKKNENKESSASLGAPLDIIQWDICN---LPLRTGSVDVIVTDMPFGKRIGSK 416
Query: 402 SNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMK 461
N+ LY L+E+G+I P GRA+LLT D+K +AL +W+ + +N+ G+
Sbjct: 417 KKNWDLYPACLMEMGRICTPGTGRAVLLTQDKKCFAKALSRLGHIWRKNHTVWVNVGGLH 476
Query: 462 SFVFILNRT 470
+ V++L RT
Sbjct: 477 AAVYLLKRT 485
>gi|354468913|ref|XP_003496894.1| PREDICTED: THUMP domain-containing protein 3 [Cricetulus griseus]
Length = 503
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 161/499 (32%), Positives = 258/499 (51%), Gaps = 44/499 (8%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE +E +EK + K G+++F+I ++ + +V LR
Sbjct: 32 SESEHLQVTIGATVPTGFEQTAADEVREKLQSSCRISKDRGKIYFDISVESLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F N E LKD + K + W +++W
Sbjct: 92 VDNLFVVVQEFKDYQFKNTKEE--------------VLKDFEELAGK---LPWSDPLKVW 134
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEK--GDL 187
+ T++ + K N +K + + +E S +T V+N +
Sbjct: 135 QINTSFKK----KKAKRRKANQSAGKEKDNCGQGDKAEEKSSKT--LVSNTSESRILDYY 188
Query: 188 QNQELKE------IDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERA 240
+N +KE D+ + C + ++ E + KFRVTCNR G KH TS E+ R
Sbjct: 189 ENPAIKEEVSTLVGDVLACCRDETGESLREETEPQVQKFRVTCNRAGEKHCFTSNEAARD 248
Query: 241 FGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIA 300
FGG + + + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+A
Sbjct: 249 FGGSVQEYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNITHFGPTTLRSTLA 308
Query: 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH--- 357
Y M+RL P P DV +DPMCG G IP+E + + H + + GD N V + N+L
Sbjct: 309 YGMLRLCEPEPTDVIVDPMCGTGAIPIEGATEWSHCYHIAGDNNPLAVNRAANNILSLLT 368
Query: 358 ----NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLI 413
G + L + + ++ L + A VD IVTD+PFGKR+GSK N+ LY L
Sbjct: 369 KSQIKDGKTSWGLPIDAVQWDICNLPLRTASVDIIVTDMPFGKRMGSKKRNWNLYPASLR 428
Query: 414 EIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADL 473
E+G++ RP GRA+LLT D+K +AL +W+ + +N+ G+ + V++L RT+
Sbjct: 429 EMGRVCRPGTGRAVLLTQDKKCFTKALSGMGHVWRKVHTVWVNIGGLHAAVYLLKRTSQA 488
Query: 474 FDYAIHGLKEKHKGKPFPP 492
F +H + G PP
Sbjct: 489 F---VH--PSEQDGGRHPP 502
>gi|296475027|tpg|DAA17142.1| TPA: THUMP domain-containing protein 3 [Bos taurus]
Length = 506
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 163/499 (32%), Positives = 262/499 (52%), Gaps = 39/499 (7%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE +E +EK G + K G+++F+I + + +V LR
Sbjct: 32 SESEHLQVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDISVDSLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ LKD + K + W ++IW
Sbjct: 92 VDNLFVVVQEFKDYQF--KETKEEV------------LKDFEELAGK---LPWSDPLKIW 134
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQN 189
K T + + N N + + R + ++K+ E V++ QI +N
Sbjct: 135 KINTCFKKKKT-KRRKLNP-NSSKQKIDNGRGDTTVEKDVKKELTNSVSDSQISDY-YEN 191
Query: 190 QELKEI------DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFG 242
+KE D + C + ++ + + +LKFRVTCNR G KH +S E+ R FG
Sbjct: 192 PAIKEQVSTLIGDGLTSCKDETEENSKEEADPEVLKFRVTCNRAGEKHCFSSNEAARDFG 251
Query: 243 GKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYN 302
G + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY
Sbjct: 252 GAVQDYFKWKADMTNFDVEVLLNIHDNEVVVGIALTEESLHRRNITHFGPTTLRSTLAYG 311
Query: 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN---- 358
M+RL +P P D+ +DPMCG G IP+E + + + + + GD N L + AN + +
Sbjct: 312 MLRLCAPQPTDIIVDPMCGTGAIPIEGATEWSNCYHIAGD-NNPLAVNRAANNISSLLTK 370
Query: 359 ----SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIE 414
G L L + + ++ L + VD IVTD+PFGKR+GSK N+ LY L E
Sbjct: 371 IQVKEGKLPLGLPIDTIQWDICNLPLRTGSVDIIVTDMPFGKRMGSKKRNWNLYPACLRE 430
Query: 415 IGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
+ ++ RP GRA+LLT D+K +AL LW+ + +N+ G+ + V++L RT F
Sbjct: 431 MSRVCRPGTGRAVLLTQDKKCFAKALSGMGHLWRKVHTVWVNIGGLHAAVYLLKRTPQSF 490
Query: 475 DYAIHGLKEKHKGKPFPPR 493
+H +E + P R
Sbjct: 491 ---VHPSEEDGERCPCTQR 506
>gi|395516548|ref|XP_003762449.1| PREDICTED: THUMP domain-containing protein 3 [Sarcophilus harrisii]
Length = 522
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 162/491 (32%), Positives = 262/491 (53%), Gaps = 39/491 (7%)
Query: 13 DEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDN 72
D+ +TI ATV TGFE +E +EK G + K G+++F+I ++ + KV LR +DN
Sbjct: 50 DQLCVTIGATVPTGFEQTAADEVREKLGSQSRISKDRGKIYFDISVESLSKVHSLRSVDN 109
Query: 73 ILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQI 132
+ ++ F ++ F K T+ED +LKD +D+A ++ W +++WK
Sbjct: 110 LFVVVQEFRDYQF--KETKED--------VLKD-FEDLAG------KLPWSDPLKVWKIN 152
Query: 133 TNYNGVLYPSIEQFNKYNDILRHK-KSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQE 191
T++ ++ + N + + K + ++ +K+ + T V IE D E
Sbjct: 153 TSFKKKKT-KRKKLTQQNTVFKEKVDDGQGDMGDEKQLTNHTMEAVLET-IENQDGTIDE 210
Query: 192 LKEIDINSMCSS-----QNQKTN---FTNPEENLLKFRVTCNRVGK-HTVTSMESERAFG 242
+ N S +N++ N E +LKFRVTCNR G+ H+ TS E+ R FG
Sbjct: 211 TPILTYNKKVSEKPSAIENKRVNEIPRDEAEPQVLKFRVTCNRAGENHSFTSNEAARDFG 270
Query: 243 GKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYN 302
G + D + W D+ ++D+++ L + NE VG+ +T+ SLHRRNI F TTL+ T+AY
Sbjct: 271 GAVQDYFKWKADMTNFDVEVLLNVHNNEIVVGIALTEESLHRRNITHFGPTTLRSTLAYG 330
Query: 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH----- 357
M+RL SP P D+ +DPMCG G IP+E +P+ + + GD N V + N+L
Sbjct: 331 MLRLCSPQPTDIIVDPMCGTGAIPIEGVAEWPNCYHIAGDNNPLAVKRAANNILSLLTKS 390
Query: 358 --NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEI 415
L + + ++ L + VD +VTD+PFGKR+GSK N+ LY L E+
Sbjct: 391 QIKESKAFWGLPIDAIQWDICNLPLRTGSVDILVTDMPFGKRIGSKKKNWNLYPSCLQEM 450
Query: 416 GKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLFD 475
++ RP GRA+LLT DRK +AL +W+ + +N+ G+ + V++L RT+ +F
Sbjct: 451 SRVCRPGTGRAVLLTQDRKCFSKALSRMGHVWRKVHTVWVNIGGLHAAVYLLKRTSQVF- 509
Query: 476 YAIHGLKEKHK 486
IH + +H+
Sbjct: 510 --IHPSELEHE 518
>gi|84000101|ref|NP_001033151.1| THUMP domain-containing protein 3 [Bos taurus]
gi|117940108|sp|Q2T9W2.1|THUM3_BOVIN RecName: Full=THUMP domain-containing protein 3
gi|83406085|gb|AAI11240.1| THUMP domain containing 3 [Bos taurus]
Length = 506
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 163/499 (32%), Positives = 262/499 (52%), Gaps = 39/499 (7%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE +E +EK G + K G+++F+I + + +V LR
Sbjct: 32 SESEHLQVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDITVDSLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ LKD + K + W ++IW
Sbjct: 92 VDNLFVVVQEFKDYQF--KETKEEV------------LKDFEELAGK---LPWSDPLKIW 134
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQN 189
K T + + N N + + R + ++K+ E V++ QI +N
Sbjct: 135 KINTCFKKKKT-KRRKLNP-NSSKQKIDNGRGDTTVEKDVKKELTNSVSDSQISDY-YEN 191
Query: 190 QELKEI------DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFG 242
+KE D + C + ++ + + +LKFRVTCNR G KH +S E+ R FG
Sbjct: 192 PAIKEQVSTLIGDGLTSCKDETEENSKEEADPEVLKFRVTCNRAGEKHCFSSNEAARDFG 251
Query: 243 GKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYN 302
G + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY
Sbjct: 252 GAVQDYFKWKADMTNFDVEVLLNIHDNEVVVGIALTEESLHRRNITHFGPTTLRSTLAYG 311
Query: 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN---- 358
M+RL +P P D+ +DPMCG G IP+E + + + + + GD N L + AN + +
Sbjct: 312 MLRLCAPQPTDIIVDPMCGTGAIPIEGATEWSNCYHIAGD-NNPLAVNRAANNISSLLTK 370
Query: 359 ----SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIE 414
G L L + + ++ L + VD IVTD+PFGKR+GSK N+ LY L E
Sbjct: 371 IQVKEGKLPLGLPIDTIQWDICNLPLRTGSVDIIVTDMPFGKRMGSKKRNWNLYPACLRE 430
Query: 415 IGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
+ ++ RP GRA+LLT D+K +AL LW+ + +N+ G+ + V++L RT F
Sbjct: 431 MSRVCRPGTGRAVLLTQDKKCFAKALSGMGHLWRKVHTVWVNIGGLHAAVYLLKRTPQSF 490
Query: 475 DYAIHGLKEKHKGKPFPPR 493
+H +E + P R
Sbjct: 491 ---VHPSEEDGERCPCTQR 506
>gi|344276468|ref|XP_003410030.1| PREDICTED: THUMP domain-containing protein 3 [Loxodonta africana]
Length = 509
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 166/492 (33%), Positives = 270/492 (54%), Gaps = 43/492 (8%)
Query: 16 QITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILF 75
Q+TI ATV TGFE +E +EK G + K G+++F+I ++ + +V LR +DN+
Sbjct: 38 QVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDISVESLAQVHCLRSVDNLFV 97
Query: 76 IIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNY 135
++ +++ F K T+E+ +LKD +D+A ++ W +++WK T++
Sbjct: 98 VVQELKDYQF--KETKEE--------VLKD-FEDLAG------KLPWSDPLKVWKINTSF 140
Query: 136 NGVLYPS--IEQFNKYNDILRHKKSIRNEINIKKE-SSCETEPQVNNVQIEKGDLQNQEL 192
I Q + I + +E ++KK+ +S +P + + G +E+
Sbjct: 141 KKKKAKRKKINQNSSKGKINNGRGEKIDERDVKKDFTSDALDPHILDYYENPG--IKEEI 198
Query: 193 KEIDINSMCSSQNQKTNFTNPEEN---LLKFRVTCNRVG-KHTVTSMESERAFGGKLNDT 248
+ + + SS+ T+ ++ EE LKFRVTCNR G KH TS E+ R FGG + D
Sbjct: 199 STLVGDDLASSKEDDTDESSKEETDHRALKFRVTCNRAGEKHCFTSNEAARDFGGAVQDY 258
Query: 249 YFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLAS 308
+ W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY M+RL +
Sbjct: 259 FKWKADMTNFDVEVLLNIHDNEIVVGIALTEESLHRRNITHFGPTTLRSTLAYGMLRLCA 318
Query: 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN--SGNLNREL 366
P P D+ +DPMCG G IP+E + + + + GD N L + AN + + + N +E
Sbjct: 319 PQPSDIIVDPMCGTGAIPIEGATEWSKCYHIAGD-NNPLAVNRAANNISSLLTKNQIQES 377
Query: 367 KVS---PL------VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGK 417
K S P+ +CN L + VD IVTD+PFGKR+GSK N+ LY L E+ +
Sbjct: 378 KPSWGLPIDAVQWDICN---LPLRTGSVDIIVTDMPFGKRMGSKKRNWNLYPACLREMSR 434
Query: 418 IVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLFDYA 477
+ RP GRA+LLT D+K +AL +W+ + +N+ G+ + V++L RT+ F +
Sbjct: 435 VCRPGTGRAVLLTQDKKCFTKALSRMGHVWRKVHTVWVNIGGLHAAVYLLKRTSQAFVRS 494
Query: 478 IHGLKEKHKGKP 489
+++ KG P
Sbjct: 495 SE--QDEEKGTP 504
>gi|291412500|ref|XP_002722493.1| PREDICTED: THUMP domain containing 3-like [Oryctolagus cuniculus]
Length = 519
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 154/499 (30%), Positives = 268/499 (53%), Gaps = 44/499 (8%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S +TI ATV TGFE +E +EK G + K G+++F+I ++ + +V LR
Sbjct: 32 SESARLPVTIGATVPTGFEQTAADEVREKLGSACRISKDRGKIYFDISVESLAQVHSLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ +LKD +D+A ++ W +++W
Sbjct: 92 VDNLFVVVQEFKDYQF--KSTKEE--------VLKD-FEDLAG------KLSWSDPLKVW 134
Query: 130 KQITNYNGVLYPS--IEQFNKYNDILRHKKSIRNEINIKKE-SSCETEPQVNNVQIEKGD 186
+ +++ I Q + + ++E ++KKE + +E Q+ +
Sbjct: 135 EMNSSFKKKKTKRKKINQNSNKGKTDNGQGDKKDERDVKKELTGSASETQILDY------ 188
Query: 187 LQNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESE 238
+N ++E +I+++ C + + + + ++L+FRVTCNR G KH TS E+
Sbjct: 189 YENPAIRE-EISTLVGDDLASCKDEADERSKEEADASVLRFRVTCNRAGEKHCFTSNEAA 247
Query: 239 RAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPT 298
R FGG + + + W D+ +D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T
Sbjct: 248 RDFGGAVQEHFKWKADMTSFDVEVLLNIHDNEVLVGIALTEESLHRRNITHFGPTTLRST 307
Query: 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH- 357
+AY M+RL +P P D+ +DPMCG G IP+E + + + F + GD N V + N+
Sbjct: 308 LAYGMLRLCAPQPTDIIIDPMCGTGAIPIEGATEWSNCFHIAGDNNALAVNRAANNIASL 367
Query: 358 ------NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLF 411
G+ + L + + ++ L + VD IVTD+PFGKR+GSK N+ LY
Sbjct: 368 LTKSQIKEGSPSWGLPIDTVQWDICSLPLRTGSVDIIVTDMPFGKRMGSKKRNWNLYPAC 427
Query: 412 LIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTA 471
L E+ ++ RP GRA+LLT D+K +AL +W+ + +N+ G+ + V++L RT
Sbjct: 428 LREMSRVCRPGTGRAVLLTQDKKCFTKALSGMGHVWRKVHTVWVNIGGLHAAVYLLKRTP 487
Query: 472 DLFDYAIHGLKEKHKGKPF 490
F + ++ +G P+
Sbjct: 488 QAFVHPSE--QDGERGTPW 504
>gi|431899903|gb|ELK07850.1| THUMP domain-containing protein 3 [Pteropus alecto]
Length = 623
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 155/486 (31%), Positives = 261/486 (53%), Gaps = 48/486 (9%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE +E +EK + K G+++F+I ++ + +V LR
Sbjct: 148 SESEHLQVTIGATVPTGFEQTAADEVREKLRSSCKISKDRGKIYFDISVESLAQVHCLRS 207
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ +++ F K T+E+ LKD + K + W +++W
Sbjct: 208 VDNLFVVVQELKDYQF--KETKEEV------------LKDFEELAGK---LPWSDPLKVW 250
Query: 130 KQITNYNGVLYPS--IEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDL 187
K +++ I + + I + RN+ ++KKE + N ++ L
Sbjct: 251 KINSSFKKKKTKRRKINENSSKEKIDNGRGDKRNDRDVKKE--------LTNNALDSHIL 302
Query: 188 ---QNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSME 236
+N ++E DI+++ C + +++ + +LKFRVTCNR G KH +S E
Sbjct: 303 DYYENPAIRE-DISTLVGDDLASCKDETDESSREETDTEVLKFRVTCNRAGEKHCFSSTE 361
Query: 237 SERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLK 296
+ R FGG + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+
Sbjct: 362 AARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEIIVGIALTEESLHRRNITHFGPTTLR 421
Query: 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVL 356
T+AY M+RL +P P D+ +DPMCG G IP+E + + + + + GD N L + AN +
Sbjct: 422 STLAYGMLRLCAPEPTDIIVDPMCGTGAIPIEGATEWSNCYHIAGD-NNPLAVNRAANNI 480
Query: 357 HN--------SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLY 408
+ G L+ L + + ++ L + VD IVTD+PFGKR+GSK N+ LY
Sbjct: 481 SSLLTKNQIKEGKLSWGLPIDAIQWDICNLPLRTGSVDIIVTDMPFGKRMGSKKRNWNLY 540
Query: 409 RLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILN 468
L E+ ++ RP GRA+LLT D+K +AL +W+ + +N+ G+ + V++L
Sbjct: 541 PACLREMSRVCRPGTGRAVLLTQDKKCFTKALSGMGHVWRKVHTVWVNIGGLHAAVYLLK 600
Query: 469 RTADLF 474
RT+ F
Sbjct: 601 RTSQAF 606
>gi|426249212|ref|XP_004018344.1| PREDICTED: THUMP domain-containing protein 3 [Ovis aries]
Length = 506
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 159/482 (32%), Positives = 255/482 (52%), Gaps = 40/482 (8%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE +E +EK G + K G+++F+I + + +V LR
Sbjct: 32 SESEHLQVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDISVDSLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ LKD + K + W ++IW
Sbjct: 92 VDNLFVVVQEFKDYQF--KETKEEV------------LKDFEELAGK---LPWSDPLKIW 134
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHKK--SIRNEINIKKESSCETEPQVNNVQIEKGDL 187
K N + K N +K + R + ++K+ E V++ QI
Sbjct: 135 K----INTCFKKKKTKRRKINPNSSKQKIDNGRGDTTVEKDVKKEFTNSVSDSQILDC-Y 189
Query: 188 QNQELKE------IDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERA 240
+N +KE D + C + ++ + +LKFRVTCNR G KH +S E+ R
Sbjct: 190 ENPTIKEEVSTLIGDDLTSCKDETEENSKEEGYPEVLKFRVTCNRAGEKHCFSSNEAARD 249
Query: 241 FGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIA 300
FGG + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+A
Sbjct: 250 FGGAVQDYFKWKADMTNFDVEVLLNIHDNEIVVGIALTEESLHRRNITHFGPTTLRSTLA 309
Query: 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN-- 358
Y M+RL +P P D+ +DPMCG G IP+E + + + + + GD N L + AN + +
Sbjct: 310 YGMLRLCAPQPTDIIVDPMCGTGAIPIEGATEWSNCYHIAGD-NNPLAVNRAANNISSLL 368
Query: 359 ------SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFL 412
G L+ L + + ++ L + +D IVTD+PFGKR+GSK N+ LY L
Sbjct: 369 TKIQVKEGKLSLGLPIDTIQWDICNLPLRTGSIDIIVTDMPFGKRMGSKKRNWNLYPACL 428
Query: 413 IEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTAD 472
E+ ++ RP GRA+LLT D+K +AL LW+ + +N+ G+ + V++L RT
Sbjct: 429 REMSRVCRPGTGRAVLLTQDKKCFAKALSGMGHLWRKVHTVWVNIGGLHAAVYLLKRTPQ 488
Query: 473 LF 474
F
Sbjct: 489 SF 490
>gi|301789239|ref|XP_002930036.1| PREDICTED: THUMP domain-containing protein 3-like [Ailuropoda
melanoleuca]
gi|281347859|gb|EFB23443.1| hypothetical protein PANDA_020380 [Ailuropoda melanoleuca]
Length = 503
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 155/497 (31%), Positives = 260/497 (52%), Gaps = 41/497 (8%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE +E +EK G + K G+++F+I ++ + +V LR
Sbjct: 32 SESEHLQVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDISVESLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ LKD + K + W +++W
Sbjct: 92 VDNLFVVVKEFKDYQF--KETKEEV------------LKDFEELAGK---LPWSDPLKVW 134
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNN------VQIE 183
K TN+ + K+ I N K + + + + NN +
Sbjct: 135 KINTNFKKKKTKRKKIKQNAG-----KEKIDNGQGDKTDETDDKKGFTNNTLDSHILDYY 189
Query: 184 KGDLQNQELKEIDINSMCSSQNQKTNFTNPE--ENLLKFRVTCNRVG-KHTVTSMESERA 240
+ +E+ + + + S +++K + E +LKFRVTCNR G KH +S E+ R
Sbjct: 190 ENPAIKEEISTLVGDDLASYKDEKDESSKEETQSKMLKFRVTCNRAGEKHCFSSNEAARD 249
Query: 241 FGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIA 300
FGG + D + W D+ ++D+++ L I +E VG+ +T+ SLHRRNI F TTL+ T+A
Sbjct: 250 FGGAVQDYFKWKADMTNFDVEVLLNIHDSEIVVGIALTEESLHRRNITHFGPTTLRSTLA 309
Query: 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH--- 357
Y M+RL +P P D+ +DPMCG G IP+E + + + + + GD N V + N+
Sbjct: 310 YGMLRLCAPQPTDIIVDPMCGTGAIPIEGATEWSNCYHIAGDNNPLAVDRAANNISSLLT 369
Query: 358 ----NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLI 413
G ++ L + + ++ L + VD IVTD+PFGKR+GSK N+ LY L
Sbjct: 370 KSQIKEGEVSWGLPIDAVQWDICNLPLRTGTVDIIVTDMPFGKRMGSKKRNWNLYPACLR 429
Query: 414 EIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADL 473
E+ ++ RP GRA LLT D+K I+AL +W+ + +N+ G+ + V++L RT
Sbjct: 430 EMSRVCRPGTGRAALLTQDKKCFIKALSGMGHVWRKVHTVWVNIGGLHAAVYLLKRTPQA 489
Query: 474 FDYAIHGLKEKHKGKPF 490
F +H ++ + P+
Sbjct: 490 F---VHPSEQDGERTPW 503
>gi|449474320|ref|XP_002187402.2| PREDICTED: THUMP domain-containing protein 3 [Taeniopygia guttata]
Length = 696
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 155/493 (31%), Positives = 256/493 (51%), Gaps = 61/493 (12%)
Query: 18 TIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFII 77
T ATV TGFE +E QEK G + + G+++F + + + +V LR +DN+ ++
Sbjct: 224 TFGATVPTGFEQTAAQEVQEKLGSASRISRDRGKIYFEVPARSLPEVHRLRSVDNLFVVV 283
Query: 78 ATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWK------- 130
F+++ F ++++ D LKD +++ V ++ W +++W+
Sbjct: 284 QEFKDYQF----------KENKEDALKD-------LEDLVKKLPWTDPLKVWELNNSLKK 326
Query: 131 ----------QITNYNGVLYPSIEQFNK-YNDILRHKKSIRNEINIKKESSCETE-PQ-- 176
Q G L E+ N + +N ++ +TE PQ
Sbjct: 327 KKTKRKKHNLQSPASRGKLSDGGEEGGADQNSTSDQEDCAQNPEAVEPTGGQDTENPQGV 386
Query: 177 --VNNVQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVT 233
N V+ E ++ E ++ + SS++ E +L+FRVTCNR G KH+ T
Sbjct: 387 TSRNGVEEE----EDNEQSDVKVGVQASSESGPKAGEG-EVKVLRFRVTCNRAGEKHSFT 441
Query: 234 SMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNIT 293
S E+ R FGG + + + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F T
Sbjct: 442 SNEAARDFGGAVQEHFQWKADMTNFDVEVLLNIHNNEVVVGIALTEESLHRRNITHFGPT 501
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353
TL+ T+AY M+RL P P D+ +DPMCG G IP+E + +P+ + + GD + + V +
Sbjct: 502 TLRSTLAYGMLRLCDPQPTDIIVDPMCGTGAIPIEGAAEWPYCYHIAGDNSPQAVKRAAN 561
Query: 354 NVL-----HNSGNLNRELKVSPL------VCNVRQLCFKPACVDGIVTDLPFGKRVGSKS 402
N+ + S + + L V PL +CN L + VD +VTD+PFGKR+GSK
Sbjct: 562 NISSLLRKNESKDSSTALGV-PLDVIQWDICN---LPLRTGSVDIVVTDMPFGKRMGSKK 617
Query: 403 NNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKS 462
N+ LY L+E+G+I P GRA+LLT D+K +AL +W+ + + +N+ G+ +
Sbjct: 618 KNWDLYPACLMEMGRICVPGTGRAVLLTQDKKCFAKALSRVGHIWRRAQTVWVNVGGLHA 677
Query: 463 FVFILNRTADLFD 475
V++L RT + D
Sbjct: 678 AVYLLRRTWERAD 690
>gi|10435119|dbj|BAB14495.1| unnamed protein product [Homo sapiens]
Length = 507
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 160/494 (32%), Positives = 260/494 (52%), Gaps = 47/494 (9%)
Query: 4 HKLVSTAQSD-----EKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDL 58
K V +SD E +TI ATV TGFE +E +EK G + + G+++F I +
Sbjct: 20 QKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDRGKIYFVISV 79
Query: 59 KDIEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVL 118
+ + +V LR +DN+ ++ F+++ F K T+E+ +LKD +D+A
Sbjct: 80 ESLAQVHCLRSVDNLFVVVQEFQDYQF--KQTKEE--------VLKD-FEDLAG------ 122
Query: 119 EIDWKKYMEIWKQITNYNGVLYPS--IEQFNKYNDILRHKKSIRNEINIKKE-SSCETEP 175
++ W +++WK ++ I Q + I ++ ++ N+KKE +S +
Sbjct: 123 KLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHALDS 182
Query: 176 QVNNVQIEKGDLQNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRVTCNRVG 228
+ + +N +KE D++++ C + +++ E +LKFRVTCNR G
Sbjct: 183 HILDY------YENPAIKE-DVSTLIGDDLASCKDETDESSKEETEPQVLKFRVTCNRAG 235
Query: 229 -KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
KH TS E+ R FGG + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI
Sbjct: 236 EKHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNI 295
Query: 288 VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKL 347
F TTL+ T+AY M+RL P+P D+ +DPMCG G IP+E + + F + GD N
Sbjct: 296 THFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGDNNPLA 355
Query: 348 VLKTQANVLH-------NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGS 400
V + N+ G + L + + ++ L + VD IVTDLPFGKR+GS
Sbjct: 356 VNRAANNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMGS 415
Query: 401 KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGM 460
K N+ LY L E+ ++ P GRA+LLT D K +AL +W+ + +N+ G+
Sbjct: 416 KKRNWNLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMQHVWRKVDTVWVNVGGL 475
Query: 461 KSFVFILNRTADLF 474
++ V++L RT F
Sbjct: 476 RAAVYVLIRTPQAF 489
>gi|395733491|ref|XP_002813526.2| PREDICTED: THUMP domain-containing protein 3 isoform 1 [Pongo
abelii]
gi|395733493|ref|XP_003776246.1| PREDICTED: THUMP domain-containing protein 3 isoform 2 [Pongo
abelii]
gi|395733495|ref|XP_003776247.1| PREDICTED: THUMP domain-containing protein 3 isoform 3 [Pongo
abelii]
Length = 503
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 161/494 (32%), Positives = 260/494 (52%), Gaps = 47/494 (9%)
Query: 4 HKLVSTAQSD-----EKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDL 58
K V +SD E +TI ATV TGFE +E +EK G + + G+++F I +
Sbjct: 20 QKSVQVTESDLRSESELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDRGKIYFVISV 79
Query: 59 KDIEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVL 118
+ + +V LR +DN+ ++ F+++ F K T+E+ +LKD +D+A
Sbjct: 80 ESLAQVHCLRSVDNLFVVVQEFQDYQF--KQTKEE--------VLKD-FEDLAG------ 122
Query: 119 EIDWKKYMEIWKQITNYNGVLYPS--IEQFNKYNDILRHKKSIRNEINIKKE-SSCETEP 175
++ W +++WK ++ I Q + I ++ ++ N+KKE +S +
Sbjct: 123 KLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHALDS 182
Query: 176 QVNNVQIEKGDLQNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRVTCNRVG 228
+ + +N +KE D++++ C + +++ E +LKFRVTCNR G
Sbjct: 183 HILDY------YENPAIKE-DVSTLVGDDLASCKDETDESSKEETEPQVLKFRVTCNRAG 235
Query: 229 -KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
KH TS E+ R FGG + D + W D+ ++D++I L I NE VG+ +T+ SLHRRNI
Sbjct: 236 EKHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEILLNIHDNEVIVGIALTEESLHRRNI 295
Query: 288 VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKL 347
F TTL+ T+AY M+RL P+P D+ +DPMCG G IP+E + + F + GD N
Sbjct: 296 THFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGDNNPLA 355
Query: 348 VLKTQANVLH-------NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGS 400
V + N+ G + L + + ++ L + VD IVTDLPFGKR+GS
Sbjct: 356 VNRAANNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMGS 415
Query: 401 KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGM 460
K N+ LY L E+ ++ P GRA+LLT D K +AL +W+ + +N+ G+
Sbjct: 416 KKRNWNLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGGL 475
Query: 461 KSFVFILNRTADLF 474
++ V++L RT F
Sbjct: 476 RAAVYVLIRTPQAF 489
>gi|7023089|dbj|BAA91832.1| unnamed protein product [Homo sapiens]
Length = 507
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 160/494 (32%), Positives = 260/494 (52%), Gaps = 47/494 (9%)
Query: 4 HKLVSTAQSD-----EKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDL 58
K V +SD E +TI ATV TGFE +E +EK G + + G+++F I +
Sbjct: 20 QKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDRGKIYFVISV 79
Query: 59 KDIEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVL 118
+ + +V LR +DN+ ++ F+++ F K T+E+ +LKD +D+A
Sbjct: 80 ESLAQVHCLRSVDNLFVVVQEFQDYQF--KQTKEE--------VLKD-FEDLAG------ 122
Query: 119 EIDWKKYMEIWKQITNYNGVLYPS--IEQFNKYNDILRHKKSIRNEINIKKE-SSCETEP 175
++ W +++WK ++ I Q + I ++ ++ N+KKE +S +
Sbjct: 123 KLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHALDS 182
Query: 176 QVNNVQIEKGDLQNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRVTCNRVG 228
+ + +N +KE D++++ C + +++ E +LKFRVTCNR G
Sbjct: 183 HILDY------YENPAIKE-DVSTLIGDDLASCKDETDESSKEETEPQVLKFRVTCNRAG 235
Query: 229 -KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
KH TS E+ R FGG + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI
Sbjct: 236 EKHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNI 295
Query: 288 VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKL 347
F TTL+ T+AY M+RL P+P D+ +DPMCG G IP+E + + F + GD N
Sbjct: 296 THFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGDNNPLA 355
Query: 348 VLKTQANVLH-------NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGS 400
V + N+ G + L + + ++ L + VD IVTDLPFGKR+GS
Sbjct: 356 VNRAANNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMGS 415
Query: 401 KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGM 460
K N+ LY L E+ ++ P GRA+LLT D K +AL +W+ + +N+ G+
Sbjct: 416 KKRNWNLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMQHVWRKVDTVWVNVGGL 475
Query: 461 KSFVFILNRTADLF 474
++ V++L RT F
Sbjct: 476 RAAVYVLIRTPQAF 489
>gi|410228188|gb|JAA11313.1| THUMP domain containing 3 [Pan troglodytes]
gi|410248876|gb|JAA12405.1| THUMP domain containing 3 [Pan troglodytes]
gi|410248878|gb|JAA12406.1| THUMP domain containing 3 [Pan troglodytes]
gi|410248880|gb|JAA12407.1| THUMP domain containing 3 [Pan troglodytes]
gi|410248882|gb|JAA12408.1| THUMP domain containing 3 [Pan troglodytes]
gi|410248884|gb|JAA12409.1| THUMP domain containing 3 [Pan troglodytes]
gi|410248886|gb|JAA12410.1| THUMP domain containing 3 [Pan troglodytes]
gi|410288768|gb|JAA22984.1| THUMP domain containing 3 [Pan troglodytes]
gi|410288770|gb|JAA22985.1| THUMP domain containing 3 [Pan troglodytes]
gi|410288772|gb|JAA22986.1| THUMP domain containing 3 [Pan troglodytes]
gi|410349547|gb|JAA41377.1| THUMP domain containing 3 [Pan troglodytes]
gi|410349549|gb|JAA41378.1| THUMP domain containing 3 [Pan troglodytes]
Length = 507
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 160/494 (32%), Positives = 260/494 (52%), Gaps = 47/494 (9%)
Query: 4 HKLVSTAQSD-----EKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDL 58
K V +SD E +TI ATV TGFE +E +EK G + + G+++F I +
Sbjct: 20 QKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDRGKIYFVISV 79
Query: 59 KDIEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVL 118
+ + +V LR +DN+ ++ F+++ F K T+E+ +LKD +D+A
Sbjct: 80 ESLAQVHCLRSVDNLFVVVQEFQDYQF--KQTKEE--------VLKD-FEDLAG------ 122
Query: 119 EIDWKKYMEIWKQITNYNGVLYPS--IEQFNKYNDILRHKKSIRNEINIKKE-SSCETEP 175
++ W +++WK ++ I Q + I ++ ++ N+KKE +S +
Sbjct: 123 KLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHALDS 182
Query: 176 QVNNVQIEKGDLQNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRVTCNRVG 228
+ + +N +KE D++++ C + +++ E +LKFRVTCNR G
Sbjct: 183 HILDY------YENPAIKE-DVSTLVGDDLASCKDETDESSKEETEPQVLKFRVTCNRAG 235
Query: 229 -KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
KH TS E+ R FGG + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI
Sbjct: 236 EKHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNI 295
Query: 288 VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKL 347
F TTL+ T+AY M+RL P+P D+ +DPMCG G IP+E + + F + GD N
Sbjct: 296 THFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGDNNPLA 355
Query: 348 VLKTQANVLH-------NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGS 400
V + N+ G + L + + ++ L + VD IVTDLPFGKR+GS
Sbjct: 356 VNRAANNIASLLTKSQIKEGKPSWGLPIDAIQWDICNLPLRTGSVDIIVTDLPFGKRMGS 415
Query: 401 KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGM 460
K N+ LY L E+ ++ P GRA+LLT D K +AL +W+ + +N+ G+
Sbjct: 416 KKRNWNLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGGL 475
Query: 461 KSFVFILNRTADLF 474
++ V++L RT F
Sbjct: 476 RAAVYVLIRTPQAF 489
>gi|166197706|ref|NP_056268.2| THUMP domain-containing protein 3 [Homo sapiens]
gi|166197708|ref|NP_001107564.1| THUMP domain-containing protein 3 [Homo sapiens]
gi|74733286|sp|Q9BV44.1|THUM3_HUMAN RecName: Full=THUMP domain-containing protein 3
gi|12804433|gb|AAH01622.1| THUMPD3 protein [Homo sapiens]
gi|14714570|gb|AAH10421.1| THUMPD3 protein [Homo sapiens]
gi|119584358|gb|EAW63954.1| THUMP domain containing 3, isoform CRA_a [Homo sapiens]
gi|119584359|gb|EAW63955.1| THUMP domain containing 3, isoform CRA_a [Homo sapiens]
gi|119584360|gb|EAW63956.1| THUMP domain containing 3, isoform CRA_a [Homo sapiens]
gi|119584361|gb|EAW63957.1| THUMP domain containing 3, isoform CRA_a [Homo sapiens]
gi|119584362|gb|EAW63958.1| THUMP domain containing 3, isoform CRA_a [Homo sapiens]
gi|307685773|dbj|BAJ20817.1| THUMP domain containing 3 [synthetic construct]
Length = 507
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 160/494 (32%), Positives = 260/494 (52%), Gaps = 47/494 (9%)
Query: 4 HKLVSTAQSD-----EKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDL 58
K V +SD E +TI ATV TGFE +E +EK G + + G+++F I +
Sbjct: 20 QKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDRGKIYFVISV 79
Query: 59 KDIEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVL 118
+ + +V LR +DN+ ++ F+++ F K T+E+ +LKD +D+A
Sbjct: 80 ESLAQVHCLRSVDNLFVVVQEFQDYQF--KQTKEE--------VLKD-FEDLAG------ 122
Query: 119 EIDWKKYMEIWKQITNYNGVLYPS--IEQFNKYNDILRHKKSIRNEINIKKE-SSCETEP 175
++ W +++WK ++ I Q + I ++ ++ N+KKE +S +
Sbjct: 123 KLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHALDS 182
Query: 176 QVNNVQIEKGDLQNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRVTCNRVG 228
+ + +N +KE D++++ C + +++ E +LKFRVTCNR G
Sbjct: 183 HILDY------YENPAIKE-DVSTLIGDDLASCKDETDESSKEETEPQVLKFRVTCNRAG 235
Query: 229 -KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
KH TS E+ R FGG + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI
Sbjct: 236 EKHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNI 295
Query: 288 VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKL 347
F TTL+ T+AY M+RL P+P D+ +DPMCG G IP+E + + F + GD N
Sbjct: 296 THFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGDNNPLA 355
Query: 348 VLKTQANVLH-------NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGS 400
V + N+ G + L + + ++ L + VD IVTDLPFGKR+GS
Sbjct: 356 VNRAANNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMGS 415
Query: 401 KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGM 460
K N+ LY L E+ ++ P GRA+LLT D K +AL +W+ + +N+ G+
Sbjct: 416 KKRNWNLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGGL 475
Query: 461 KSFVFILNRTADLF 474
++ V++L RT F
Sbjct: 476 RAAVYVLIRTPQAF 489
>gi|12805133|gb|AAH02024.1| THUMP domain containing 3 [Mus musculus]
gi|15215167|gb|AAH12688.1| Thumpd3 protein [Mus musculus]
Length = 504
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 151/483 (31%), Positives = 245/483 (50%), Gaps = 42/483 (8%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE E +EK + K G+++F+I ++ + +V LR
Sbjct: 32 SESEHLQVTIGATVPTGFEQTAAGEVREKLKSACRISKDRGKIYFDIAVESLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F D ++ L+D + K + W +++W
Sbjct: 92 VDNLFVVVQEFKDYQFK--------------DTKEEVLRDFEELAGK---LPWSDPLKVW 134
Query: 130 KQITNYNGVLYPSI---EQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGD 186
+ T + + K + KK +S ++ + +
Sbjct: 135 QINTTFKKKKAKRRKANQSAGKEKADCGQGDKADEKDGKKKHASSTSDSHILDY------ 188
Query: 187 LQNQELKE------IDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESER 239
+N +KE D+ S C + ++ E + KFRVTCNR G KH TS E+ R
Sbjct: 189 YENPAIKEEISTLVGDVLSSCKDETGQSLREETEPQVQKFRVTCNRAGEKHCFTSNEAAR 248
Query: 240 AFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTI 299
FGG + + + W D+ ++D+++ L I NE V + +T+ SLHRRNI F TTL+ T+
Sbjct: 249 DFGGAIQEYFKWKADMTNFDVEVLLNIHDNEVIVAIALTEESLHRRNITHFGPTTLRSTL 308
Query: 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN- 358
AY M+RL P P DV +DPMCG G IP+E + + H + + GD N L + AN + +
Sbjct: 309 AYGMLRLCEPKPTDVIVDPMCGTGAIPIEGATEWSHCYHIAGD-NNPLAVNRAANNISSL 367
Query: 359 -------SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLF 411
G + L + + ++ L + A VD IVTD+PFGKR+GSK N+ LY
Sbjct: 368 LTKSQIKDGKTSWGLPIDAVQWDICNLPLRTASVDIIVTDMPFGKRMGSKKRNWNLYPAC 427
Query: 412 LIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTA 471
L E+ ++ RP GRA+LLT D+K +AL +W+ + +N+ G+ + V++L RTA
Sbjct: 428 LREMSRVCRPGTGRAVLLTQDKKCFTKALSGMGHVWRKVHVVWVNIGGLHAAVYLLKRTA 487
Query: 472 DLF 474
F
Sbjct: 488 QAF 490
>gi|397486315|ref|XP_003814275.1| PREDICTED: THUMP domain-containing protein 3 [Pan paniscus]
Length = 507
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 160/494 (32%), Positives = 260/494 (52%), Gaps = 47/494 (9%)
Query: 4 HKLVSTAQSD-----EKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDL 58
K V +SD E +TI ATV TGFE +E +EK G + + G+++F I +
Sbjct: 20 QKSVQVTESDLGSEYELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDRGKIYFVISV 79
Query: 59 KDIEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVL 118
+ + +V LR +DN+ ++ F+++ F K T+E+ +LKD +D+A
Sbjct: 80 ESLAQVHCLRSVDNLFVVVQEFQDYQF--KQTKEE--------VLKD-FEDLAG------ 122
Query: 119 EIDWKKYMEIWKQITNYNGVLYPS--IEQFNKYNDILRHKKSIRNEINIKKE-SSCETEP 175
++ W +++WK ++ I Q + I ++ ++ N+KKE +S +
Sbjct: 123 KLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHALDS 182
Query: 176 QVNNVQIEKGDLQNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRVTCNRVG 228
+ + +N +KE D++++ C + +++ E +LKFRVTCNR G
Sbjct: 183 HILDY------YENPAIKE-DVSTLVGDDLASCKDETDESSKEETEPQVLKFRVTCNRAG 235
Query: 229 -KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
KH TS E+ R FGG + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI
Sbjct: 236 EKHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNI 295
Query: 288 VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKL 347
F TTL+ T+AY M+RL P+P D+ +DPMCG G IP+E + + F + GD N
Sbjct: 296 THFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGDNNPLA 355
Query: 348 VLKTQANVLH-------NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGS 400
V + N+ G + L + + ++ L + VD IVTDLPFGKR+GS
Sbjct: 356 VNRAANNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMGS 415
Query: 401 KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGM 460
K N+ LY L E+ ++ P GRA+LLT D K +AL +W+ + +N+ G+
Sbjct: 416 KKRNWNLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGGL 475
Query: 461 KSFVFILNRTADLF 474
++ V++L RT F
Sbjct: 476 RAAVYVLIRTPQAF 489
>gi|356460886|ref|NP_001239102.1| THUMP domain containing 3 [Canis lupus familiaris]
Length = 503
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 157/499 (31%), Positives = 257/499 (51%), Gaps = 45/499 (9%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S Q+TI ATV TGFE +E +EK G + K G+++F+I ++ + +V LR
Sbjct: 32 SESQHLQVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDISVESLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ LKD + K + W +++W
Sbjct: 92 VDNLFVVVKEFKDYPF--KETKEEV------------LKDFEELAGK---LPWSDPLKVW 134
Query: 130 KQITNYNGVLY--------PSIEQFNK-YNDILRHKKSIRNEINIKKESSCETEPQVNNV 180
K T++ S E+ N D + + IN +S + +
Sbjct: 135 KINTSFKKKKTKRKKINQNSSKEKTNNGQGDKTDERDDKKGFINNTLDSHILDYYENPAI 194
Query: 181 QIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESER 239
+ E L +L + C + +++ + LLKFRVTCNR G KH +S E+ R
Sbjct: 195 KEEVSTLVGDDL------ASCKDEKDESSKEETQPELLKFRVTCNRAGEKHCFSSNEAAR 248
Query: 240 AFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTI 299
FGG + D + W D+ ++D+++ L I E VG+ +T+ SLHRRNI F TTL+ T+
Sbjct: 249 DFGGAIQDYFKWKADMTNFDVEVLLNIHDKEIVVGIALTEESLHRRNITHFGPTTLRSTL 308
Query: 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN- 358
AY M+RL +P P D+ +DPMCG G IP+E + + + + + GD N L + AN + +
Sbjct: 309 AYGMLRLCAPQPTDIIVDPMCGTGAIPIEGATEWSNCYHIAGD-NNPLAVNRAANNISSL 367
Query: 359 -------SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLF 411
G ++ L + + ++ L + VD IVTD+PFGKR+GSK N+ LY
Sbjct: 368 LTKSQIKEGKVSWGLPIDAVQWDICNLPLRTGSVDIIVTDMPFGKRMGSKKRNWNLYPAC 427
Query: 412 LIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTA 471
L E+ ++ RP GRA LLT D+K +AL +W+ + +N+ G+ + V++L RT
Sbjct: 428 LREMSRVCRPGTGRAALLTQDKKCFAKALSGMGHVWRKVHTVWVNIGGLHAAVYLLKRTP 487
Query: 472 DLFDYAIHGLKEKHKGKPF 490
F IH ++ + P+
Sbjct: 488 QAF---IHPSEQDGERTPW 503
>gi|6680129|ref|NP_032214.1| THUMP domain-containing protein 3 [Mus musculus]
gi|81886983|sp|P97770.1|THUM3_MOUSE RecName: Full=THUMP domain-containing protein 3; AltName:
Full=GtROSA26asSor
gi|1778861|gb|AAC60384.1| ROSA26AS [Mus musculus]
gi|28386230|gb|AAH46800.1| THUMP domain containing 3 [Mus musculus]
gi|74209087|dbj|BAE24945.1| unnamed protein product [Mus musculus]
gi|148667019|gb|EDK99435.1| THUMP domain containing 3, isoform CRA_b [Mus musculus]
Length = 505
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 151/483 (31%), Positives = 244/483 (50%), Gaps = 42/483 (8%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE E +EK + K G+++F+I ++ + +V LR
Sbjct: 33 SESEHLQVTIGATVPTGFEQTAAGEVREKLKSACRISKDRGKIYFDIAVESLAQVHCLRS 92
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F D ++ L+D + K + W +++W
Sbjct: 93 VDNLFVVVQEFKDYQFK--------------DTKEEVLRDFEELAGK---LPWSDPLKVW 135
Query: 130 KQITNYNGVLYPSI---EQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGD 186
+ T + + K + KK +S ++ + +
Sbjct: 136 QINTTFKKKKAKRRKANQSAGKEKADCGQGDKADEKDGKKKHASSTSDSHILDY------ 189
Query: 187 LQNQELKE------IDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESER 239
+N +KE D+ S C + ++ E + KFRVTCNR G KH TS E+ R
Sbjct: 190 YENPAIKEEISTLVGDVLSSCKDETGQSLREETEPQVQKFRVTCNRAGEKHCFTSNEAAR 249
Query: 240 AFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTI 299
FGG + + + W D+ ++D+++ L I NE V + +T+ SLHRRNI F TTL+ T+
Sbjct: 250 DFGGAIQEYFKWKADMTNFDVEVLLNIHDNEVIVAIALTEESLHRRNITHFGPTTLRSTL 309
Query: 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN- 358
AY M+RL P P DV +DPMCG G IP+E + + H + + GD N L + AN + +
Sbjct: 310 AYGMLRLCEPKPTDVIVDPMCGTGAIPIEGATEWSHCYHIAGD-NNPLAVNRAANNISSL 368
Query: 359 -------SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLF 411
G L + + ++ L + A VD IVTD+PFGKR+GSK N+ LY
Sbjct: 369 LTKSQIKDGKTTWGLPIDAVQWDICNLPLRTASVDIIVTDMPFGKRMGSKKRNWNLYPAC 428
Query: 412 LIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTA 471
L E+ ++ RP GRA+LLT D+K +AL +W+ + +N+ G+ + V++L RTA
Sbjct: 429 LREMSRVCRPGTGRAVLLTQDKKCFTKALSGMGHVWRKVHVVWVNIGGLHAAVYLLKRTA 488
Query: 472 DLF 474
F
Sbjct: 489 QAF 491
>gi|332231604|ref|XP_003264984.1| PREDICTED: LOW QUALITY PROTEIN: THUMP domain-containing protein 3
[Nomascus leucogenys]
Length = 507
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 160/494 (32%), Positives = 260/494 (52%), Gaps = 47/494 (9%)
Query: 4 HKLVSTAQSD-----EKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDL 58
K V +SD E +TI ATV TGFE +E +EK G + + G+++F I +
Sbjct: 20 QKSVQVTESDLRSASELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDRGKIYFVISV 79
Query: 59 KDIEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVL 118
+ + +V LR +DN+ ++ F+++ F K T+E+ +LKD +D+A
Sbjct: 80 ESLAQVHCLRSVDNLFVVVQEFQDYQF--KQTKEE--------VLKD-FEDLAG------ 122
Query: 119 EIDWKKYMEIWKQITNYNGVLYPS--IEQFNKYNDILRHKKSIRNEINIKKE-SSCETEP 175
++ W +++WK ++ I Q + I ++ ++ N+KKE +S +
Sbjct: 123 KLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHAFDS 182
Query: 176 QVNNVQIEKGDLQNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRVTCNRVG 228
+ + +N +KE D++++ C + +++ E +LKFRVTCNR G
Sbjct: 183 HILDY------YENPAIKE-DVSTLVGDDLASCKDETDESSKEETEPQVLKFRVTCNRAG 235
Query: 229 -KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
KH TS E+ R FGG + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI
Sbjct: 236 EKHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNI 295
Query: 288 VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKL 347
F TTL+ T+AY M+RL P+P D+ +DPMCG G IP+E + + F + GD N
Sbjct: 296 THFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGDNNPLA 355
Query: 348 VLKTQANVLH-------NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGS 400
V + N+ G + L + + ++ L + VD IVTDLPFGKR+GS
Sbjct: 356 VNRAANNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMGS 415
Query: 401 KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGM 460
K N+ LY L E+ ++ P GRA+LLT D K +AL +W+ + +N+ G+
Sbjct: 416 KKRNWNLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGGL 475
Query: 461 KSFVFILNRTADLF 474
++ V++L RT F
Sbjct: 476 RAAVYVLIRTPQAF 489
>gi|410951634|ref|XP_004001446.1| PREDICTED: LOW QUALITY PROTEIN: THUMP domain-containing protein 3
[Felis catus]
Length = 506
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 158/500 (31%), Positives = 264/500 (52%), Gaps = 48/500 (9%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE +E +EK G + K G+++F+I ++ + +V LR
Sbjct: 32 SESEHLQVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDISVESLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ LKD + K + W + +++W
Sbjct: 92 VDNLFVVVKEFKDYQF--KETKEEV------------LKDFEELAGK---LPWSEPLKVW 134
Query: 130 KQITNYNGVLYPS--IEQFNKYNDILRHKKSIRNEINIKKESSCET-EPQVNNVQIEKGD 186
T++ I Q + I + +E + KK + +T + + +
Sbjct: 135 NVNTSFKKKKTKRKKINQNSSKEKIDNGQGDKADERDDKKGFTNKTLDSHILDY------ 188
Query: 187 LQNQELKE-------IDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESE 238
+N +KE D+ S ++ + PE +LKFRVTCNR G KH +S E+
Sbjct: 189 YENPAIKEEISTLVGDDLASCKDETDEGSKGETPE--VLKFRVTCNRAGEKHCFSSNEAA 246
Query: 239 RAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPT 298
R FGG + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T
Sbjct: 247 RDFGGGVQDYFKWKADMTNFDVEVLLNIHDNEIVVGIALTEESLHRRNITHFGPTTLRST 306
Query: 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN 358
+AY M+RL +P P D+ +DPMCG G IP+E + + + + + GD N L + AN + +
Sbjct: 307 LAYGMLRLCAPQPTDIIVDPMCGTGAIPIEGATEWSNCYHIAGD-NNPLAVNRAANNISS 365
Query: 359 --------SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRL 410
G + L + + ++ L + VD IVTD+PFGKR+GSK N+ LY
Sbjct: 366 LLTKSQIKEGKVFWGLPIDAVQWDICNLPLRTGSVDIIVTDMPFGKRMGSKKRNWNLYPA 425
Query: 411 FLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRT 470
L E+ ++ RP GRA+LLT D+K +AL +W+ + +N+ G+ + V++L RT
Sbjct: 426 CLREMSRVCRPGTGRAVLLTQDKKCFTKALSGMGHVWRKVHTVWVNIGGLHAAVYLLKRT 485
Query: 471 ADLFDYAIHGLKEKHKGKPF 490
F +H +++ + P+
Sbjct: 486 PQAF---VHPVEQNGERTPW 502
>gi|148235156|ref|NP_001082863.1| THUMP domain-containing protein 3 [Danio rerio]
gi|126632163|gb|AAI34226.1| Zgc:163086 protein [Danio rerio]
Length = 477
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 158/487 (32%), Positives = 259/487 (53%), Gaps = 40/487 (8%)
Query: 11 QSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGI 70
Q ++ +TI ATV TGFE EE QEK G + K+ GR++F+I + +V L+ +
Sbjct: 2 QDTDQTVTIGATVPTGFELTAAEEVQEKLGATARVSKNRGRIYFDITTDKLIEVHHLKSL 61
Query: 71 DNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWK 130
DN+ ++ +E++ F K T+E+ +L D +++AT ++ W +E+WK
Sbjct: 62 DNLFVVVKEYEDYQF--KATKEE--------VLLD-WQELAT------KLPWTNALEVWK 104
Query: 131 QITNYNGVLYPSIEQFNKYNDILRHKKSIRNE-INIKKESSCETEPQVNNVQIEKGDLQN 189
L SI + KS + E ++ K + ++P+ +E +
Sbjct: 105 --------LNNSIRKKKGRRKRPNPTKSDQCENVSAKCPDTVPSDPEE---LLENCETLE 153
Query: 190 QELKEIDINSMCSSQNQKTNFTNPEEN-----LLKFRVTCNRVG-KHTVTSMESERAFGG 243
K+ D++ + +++ + P++ LKFRVTC+R G KH TS ++ R FGG
Sbjct: 154 VTEKQADVSPNLENDSEEDKPSEPQDQDSELMPLKFRVTCSRAGDKHCFTSNDAARDFGG 213
Query: 244 KLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNM 303
+ + + W D+ +D+++ L I NE VG+ +T SLHRRNI F TTL+ T+AY M
Sbjct: 214 AVQEFFQWKADMTKFDVEVLLNIHNNEVVVGIALTVESLHRRNITHFGPTTLRSTLAYGM 273
Query: 304 VRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH-----N 358
+RL P DV +DPMCG G IP++ ++ + ++FF+ GD N V ++ N+ H
Sbjct: 274 LRLCKPQISDVIVDPMCGTGAIPLKGAMEWQNSFFIAGDNNGTAVSRSVNNIKHILEKTQ 333
Query: 359 SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKI 418
G L + + ++ L + + VD I+TD+PFGKRVGS+ N+ LY L L E+ ++
Sbjct: 334 DGGSPSGLPLDIVQWDLCNLPMRSSSVDIIITDMPFGKRVGSRKKNWELYPLCLREMARV 393
Query: 419 VRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLFDYAI 478
+P G+A LLT D+K +AL LWK + +N+ G+ + VF+L RT +F +
Sbjct: 394 CKPGTGKAALLTQDKKCFTKALLQMGGLWKKLHTVWVNVGGLHAGVFVLKRTNVIFGISS 453
Query: 479 HGLKEKH 485
E H
Sbjct: 454 EDKTEPH 460
>gi|281604140|ref|NP_001164017.1| THUMP domain containing 3 [Rattus norvegicus]
gi|281604142|ref|NP_001164018.1| THUMP domain containing 3 [Rattus norvegicus]
gi|281604144|ref|NP_001164019.1| THUMP domain containing 3 [Rattus norvegicus]
gi|149036888|gb|EDL91506.1| similar to THUMP domain containing 3 (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 504
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 154/487 (31%), Positives = 251/487 (51%), Gaps = 50/487 (10%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE +E +EK + K G+++F+I ++ + +V LR
Sbjct: 32 SESEHLQVTIGATVPTGFEQTAADEVREKLKSSCRISKDRGKIYFDIAVESLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ L+D + K + W +++W
Sbjct: 92 VDNLFVVVEEFKDYQF--KATKEEV------------LRDFEELAGK---LPWSDPLKVW 134
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINI------KKESSCETEPQVNNVQIE 183
+ T + + R K N KK +S +P + +
Sbjct: 135 QINTTFKKKKAKRRKANQSAG---REKADCGQGDNAGEKDGKKKLASGAADPHILDY--- 188
Query: 184 KGDLQNQELKEIDINSMCSS-------QNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSM 235
+N +KE +I+++ +N ++ E + KFRVTCNR G KH TS
Sbjct: 189 ---YENPAIKE-EISTLIGEVLASGEDENGQSLREEAEPQVQKFRVTCNRAGEKHCFTSN 244
Query: 236 ESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTL 295
E+ R FGG + + + W D+ ++D+++ L I NE V + +T+ SLHRRNI F TTL
Sbjct: 245 EAARGFGGAVQEYFKWKADMTNFDVEVLLNIHNNEVIVAIALTEESLHRRNITHFGPTTL 304
Query: 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANV 355
+ T+AY M+RL P P DV +DPMCG G IP+E + + H + + GD N L + AN
Sbjct: 305 RSTLAYGMLRLCEPKPTDVIVDPMCGTGAIPIEGATEWSHCYHIAGD-NNPLAVNRAANN 363
Query: 356 LHN--------SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLL 407
+ + G + L + + ++ L + A VD IVTD+PFGKR+GSK N+ L
Sbjct: 364 ISSLLTKSQIKDGKTSWGLPIDAVQWDICNLPLRTASVDIIVTDMPFGKRMGSKKRNWNL 423
Query: 408 YRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFIL 467
Y L E+ ++ RP+ GRA+LLT D+K +AL +W+ + +N+ G+ + V++L
Sbjct: 424 YPACLREMSRVCRPRTGRAVLLTQDKKCFTKALSGMGHVWRKVHTVWVNIGGLHAAVYLL 483
Query: 468 NRTADLF 474
RT F
Sbjct: 484 KRTPQDF 490
>gi|351710985|gb|EHB13904.1| THUMP domain-containing protein 3 [Heterocephalus glaber]
Length = 504
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 152/492 (30%), Positives = 256/492 (52%), Gaps = 35/492 (7%)
Query: 12 SDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGID 71
S+ IT+ ATV TGFE E +EK G + K G+++F+I ++ + +V LR +D
Sbjct: 35 SEHLHITVGATVPTGFEQTAAGEIREKLGSSCKISKDRGKIYFDISVESLAQVHCLRSVD 94
Query: 72 NILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWK- 130
N+ ++ F++F F K T+E++ LKD + K + W +++W+
Sbjct: 95 NLFVVVEEFKDFQF--KKTKEEA------------LKDFEDLAGK---LPWSDPLKVWEV 137
Query: 131 -QITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQN 189
+ Q + I + +E +I+ + + + + +
Sbjct: 138 NTCFKKKKTKCKKMSQNSNKERIGNRQGDKLDEKDIRGFTDNALDSHI--LDYYENPAIK 195
Query: 190 QELKEIDINSMCSSQNQKTNFT--NPEENLLKFRVTCNRVG-KHTVTSMESERAFGGKLN 246
+E+ + + + SS+++ + E +LKFRVTCNR G KH TS E+ R FGG +
Sbjct: 196 EEISTLVGDDLASSKDETDEHSKEETEPQVLKFRVTCNRAGEKHCFTSNEAARDFGGAVQ 255
Query: 247 DTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRL 306
D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY M+RL
Sbjct: 256 DHFKWKADMTNFDVEVLLNIHDNEMVVGIALTEESLHRRNITHFGPTTLRSTLAYGMLRL 315
Query: 307 ASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN-------- 358
+P P D+ +DPMCG G IP+E + + + + + GD N L +K AN + +
Sbjct: 316 CAPQPTDIIIDPMCGTGAIPIEGATEWSNCYHIAGD-NSPLAVKRAANNISSLLTKSQIK 374
Query: 359 SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKI 418
+ L + + + L + VD IVTD+PFGKR+GSK N+ LY L E+ ++
Sbjct: 375 ESKSSWGLPIDAIQWDSCNLPLRTGSVDIIVTDMPFGKRMGSKKRNWNLYPACLREMSRV 434
Query: 419 VRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLFDYAI 478
RP GRA+LLT D+K +AL +W+ + +N+ G+ + V++L RT F ++
Sbjct: 435 CRPGTGRAVLLTQDKKCFAKALSGMGHVWRKVHTVWVNIGGLHAAVYLLKRTPQAFVHSS 494
Query: 479 HGLKEKHKGKPF 490
++ +G P+
Sbjct: 495 E--QDGERGTPW 504
>gi|380811500|gb|AFE77625.1| THUMP domain-containing protein 3 [Macaca mulatta]
gi|383417305|gb|AFH31866.1| THUMP domain-containing protein 3 [Macaca mulatta]
gi|384944176|gb|AFI35693.1| THUMP domain-containing protein 3 [Macaca mulatta]
gi|387540478|gb|AFJ70866.1| THUMP domain-containing protein 3 [Macaca mulatta]
Length = 503
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 157/497 (31%), Positives = 262/497 (52%), Gaps = 40/497 (8%)
Query: 1 MDLHKLVSTAQSDEKQ--------ITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRV 52
++LH+ S+ Q E +TI ATV TGFE +E +EK G + + G++
Sbjct: 14 VNLHENQSSVQVTESDLRSESELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDRGKI 73
Query: 53 FFNIDLKDIEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVAT 112
+F I ++ + +V LR +DN+ ++ F+++ F ++ + ++LKD +D+A
Sbjct: 74 YFVISVESLAQVHCLRSVDNLFVVVQEFQDYQF----------KQIKEEVLKD-FEDLAG 122
Query: 113 IQNKVLEIDWKKYMEIWKQITNYNGVLYPS--IEQFNKYNDILRHKKSIRNEINIKKE-S 169
++ W +++WK ++ I Q I ++ N+ N+KKE +
Sbjct: 123 ------KLPWSNPLKVWKINASFKKKKAKRKKINQNLSKEKINNGQEVKINQRNVKKEFT 176
Query: 170 SCETEPQVNNVQIEKGDLQNQELKEIDINSMCSSQNQ--KTNFTNPEENLLKFRVTCNRV 227
S + + + + +E+ + + + SS+++ +++ E +LKFRVTCNR
Sbjct: 177 SHALDSHI--LDYYENPAIKEEVSTLVGDDLASSKDETDESSKEETEPQVLKFRVTCNRA 234
Query: 228 G-KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRN 286
G KH TS E+ R FGG + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRN
Sbjct: 235 GEKHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRN 294
Query: 287 IVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEK 346
I F TTL+ T+AY M+RL P+P D+ +DPMCG G IP+E + + F + GD N
Sbjct: 295 ITHFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWTDCFHIAGDNNPL 354
Query: 347 LVLKTQANVLH-------NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVG 399
V + N+ G + L + + ++ L + VD IVTDLPFGKR+G
Sbjct: 355 AVNRAANNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMG 414
Query: 400 SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSG 459
SK N+ LY L E+ ++ P GRA+LLT D K +AL +W+ + +N+ G
Sbjct: 415 SKKRNWNLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGG 474
Query: 460 MKSFVFILNRTADLFDY 476
+++ V++L RT F Y
Sbjct: 475 LRAAVYVLIRTPQAFVY 491
>gi|390475293|ref|XP_003734933.1| PREDICTED: THUMP domain-containing protein 3 [Callithrix jacchus]
Length = 503
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 152/478 (31%), Positives = 245/478 (51%), Gaps = 46/478 (9%)
Query: 17 ITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFI 76
+T+ ATV TGFE +E +EK G + + G+++F I L+ + +V LR +DN+ +
Sbjct: 38 VTVGATVPTGFEQTAADEVREKLGSPCKISRDRGKIYFVISLESLAQVHCLRSVDNLFVV 97
Query: 77 IATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYN 136
+ F+++ F +K + ++LKD +D+A ++ W +++WK N
Sbjct: 98 VQEFQDYQF----------KKTKEEVLKD-FEDLAG------KLSWSNPLKVWK----IN 136
Query: 137 GVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGD------LQNQ 190
+ K N + S + +IN +E + + D +N
Sbjct: 137 DSFKKKKAKRKKIN-----QNSSKGKINYGQEVKIDQRNDKRDFTSHASDSHILDYYENP 191
Query: 191 ELKE------IDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFGG 243
+ E D + C + +++ E +LKFRVTCNR G KH TS E+ R FGG
Sbjct: 192 AIGEEVSTLVGDDLASCKDETDESSKEETEPQVLKFRVTCNRAGEKHCFTSNEAARDFGG 251
Query: 244 KLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNM 303
+ D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY M
Sbjct: 252 AVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNITHFGPTTLRSTLAYGM 311
Query: 304 VRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH------ 357
+RL P+P D+ +DPMCG G IP+E + + F + GD N V + N+
Sbjct: 312 LRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGDNNPLAVNRVANNIASLLTKSQ 371
Query: 358 -NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIG 416
G + L + + ++ L + VD IVTDLPFGKR+GSK N+ LY L E+
Sbjct: 372 IKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRIGSKKRNWNLYPACLREMS 431
Query: 417 KIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
++ P GRA+LLT D K +AL +W+ + +N+ G+++ V++L RT + F
Sbjct: 432 RVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGGLRAAVYVLLRTPEAF 489
>gi|403270369|ref|XP_003927158.1| PREDICTED: LOW QUALITY PROTEIN: THUMP domain-containing protein 3
[Saimiri boliviensis boliviensis]
Length = 507
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 150/469 (31%), Positives = 246/469 (52%), Gaps = 28/469 (5%)
Query: 17 ITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFI 76
+TI ATV TGFE +E +EK G + + G+++F I L+ + +V LR +DN+ +
Sbjct: 38 VTIGATVPTGFEQTAADEVREKLGSPCKISRDRGKIYFVISLESLAQVHCLRSVDNLFVV 97
Query: 77 IATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYN 136
+ F+++ F +K + ++LKD +D+A ++ W +++WK ++
Sbjct: 98 VQEFQDYQF----------KKTKEEVLKD-FEDLAG------KLPWSNPLKVWKINDSFK 140
Query: 137 GVLYPS--IEQFNKYNDILRHKKSIRNEINIKKE-SSCETEPQVNNVQIEKGDLQNQELK 193
I Q + I ++ ++ N KK+ +S + + + +
Sbjct: 141 KKKAKRKKINQNSSKGKINNGQEVKIDQRNDKKDFTSHALDSHILDYYENPAIREEVSTL 200
Query: 194 EIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFGGKLNDTYFWL 252
D + C + +++ E +LKFRVTCNR G KH TS E+ R FGG + D + W
Sbjct: 201 VGDDLASCKDETDESSKEETEPQVLKFRVTCNRAGDKHCFTSNEAARDFGGAVQDYFKWK 260
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPG 312
D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY M+RL P+P
Sbjct: 261 ADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNITHFGPTTLRSTLAYGMLRLCDPLPY 320
Query: 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH-------NSGNLNRE 365
D+ +DPMCG G IP+E + + F + GD N V + N+ G +
Sbjct: 321 DIIVDPMCGTGAIPIEGATEWSDCFHIAGDNNPLAVNRAANNIASLLTKSQIKEGKPSWG 380
Query: 366 LKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGR 425
L + + ++ L + VD IVTDLPFGKR+GSK N+ LY L E+ ++ P GR
Sbjct: 381 LPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRIGSKKRNWNLYPACLREMSRVCTPTTGR 440
Query: 426 AILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
A+LLT D K +AL +W+ + +N+ G+++ V++L RT + F
Sbjct: 441 AVLLTQDTKCFTKALSGMRHVWRKVDTVWVNIGGLRAAVYVLLRTPEAF 489
>gi|348556749|ref|XP_003464183.1| PREDICTED: THUMP domain-containing protein 3-like [Cavia porcellus]
Length = 504
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 162/505 (32%), Positives = 265/505 (52%), Gaps = 49/505 (9%)
Query: 9 TAQSDEK------QITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIE 62
T +SD K +TI ATV TGFE +E +EK G + K G+++F+I ++ +
Sbjct: 26 TEESDTKDEFEHLHVTIGATVPTGFEQTAADEIKEKLGSSCKISKDRGKIYFDISVESLA 85
Query: 63 KVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDW 122
+V LR +DN+ ++ F++F F K T+E++ LKD + K + W
Sbjct: 86 QVHCLRSVDNLFVVVEEFKDFQF--KKTKEEA------------LKDFEDLAGK---LPW 128
Query: 123 KKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQI 182
++IW+ T + + +K ++ K+ I N K + + N +
Sbjct: 129 SDPLKIWEINT-----CFKKKKTKHKKMNVNSSKQKIVNGQGDKLDERDDKGFIDNALDS 183
Query: 183 EKGDL-QNQELKEIDINSMCS-------SQNQKTNFTNPEENLLKFRVTCNRVG-KHTVT 233
D +N +KE +I+++ S+N + + E +LKFRVTCNR G KH T
Sbjct: 184 HILDYYENPAIKE-EISTLVGDDLASSKSENDEHSKAETEPQVLKFRVTCNRAGEKHCFT 242
Query: 234 SMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNIT 293
S E+ R FGG + + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F T
Sbjct: 243 SNEAARDFGGAVQGLFKWKADMTNFDVEVLLNIHNNEMVVGIALTEESLHRRNITHFGPT 302
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353
TL+ T+AY M+RL +P P D+ +DPMCG G IP+E + + + + + GD N L +K A
Sbjct: 303 TLRSTLAYGMLRLCAPQPTDIIVDPMCGTGAIPIEGATEWCNCYHIAGD-NSPLAVKRAA 361
Query: 354 NVLHN--------SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNF 405
+ + + G + L + + + L + VD IVTD+PFGKR+GSK N+
Sbjct: 362 DNISSLLTKNQVKEGKHSWGLPIDAVQWDSCNLPLRTGSVDIIVTDMPFGKRMGSKKRNW 421
Query: 406 LLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVF 465
LY L E+ ++ RP GRA+LLT D+K +AL +W+ + +N+ G+ + V+
Sbjct: 422 NLYPACLREMSRVCRPGTGRAVLLTQDKKCFAKALSGMGHVWRKVHTVWVNIGGLHAAVY 481
Query: 466 ILNRTADLFDYAIHGLKEKHKGKPF 490
+L RT F + +++ +G P+
Sbjct: 482 LLKRTPQAFVHCSE--QDEQRGTPW 504
>gi|402859483|ref|XP_003894188.1| PREDICTED: THUMP domain-containing protein 3 isoform 1 [Papio
anubis]
gi|402859485|ref|XP_003894189.1| PREDICTED: THUMP domain-containing protein 3 isoform 2 [Papio
anubis]
gi|402859487|ref|XP_003894190.1| PREDICTED: THUMP domain-containing protein 3 isoform 3 [Papio
anubis]
Length = 503
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 156/495 (31%), Positives = 259/495 (52%), Gaps = 40/495 (8%)
Query: 1 MDLHKLVSTAQSDEKQ--------ITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRV 52
++LH+ S+ Q E +TI ATV TGFE +E +EK G + + G++
Sbjct: 14 VNLHENQSSVQVTESDLRSESELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDRGKI 73
Query: 53 FFNIDLKDIEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVAT 112
+F I ++ + +V LR +DN+ ++ F+++ F ++ + ++LKD +D+A
Sbjct: 74 YFVISVESLAQVHCLRSVDNLFVVVQEFQDYQF----------KQIKEEVLKD-FEDLAG 122
Query: 113 IQNKVLEIDWKKYMEIWKQITNYNGVLYPS--IEQFNKYNDILRHKKSIRNEINIKKE-S 169
++ W +++WK ++ I Q I ++ N+ N+KKE +
Sbjct: 123 ------KLPWSNPLKVWKINASFKKKKAKRKKINQNLSKEKINNGQEVKINQRNVKKEFT 176
Query: 170 SCETEPQVNNVQIEKGDLQNQELKEIDINSMCSSQNQKTNFT--NPEENLLKFRVTCNRV 227
S + + + + +E+ + + + SS+++ + E +LKFRVTCNR
Sbjct: 177 SHALDSHI--LDYYENPAIKEEVSTLVGDDLASSKDETDEISKEETEPQVLKFRVTCNRA 234
Query: 228 G-KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRN 286
G KH TS E+ R FGG + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRN
Sbjct: 235 GEKHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRN 294
Query: 287 IVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEK 346
I F TTL+ T+AY M+RL P+P D+ +DPMCG G IP+E + + F + GD N
Sbjct: 295 ITHFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWTDCFHIAGDNNPL 354
Query: 347 LVLKTQANVLH-------NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVG 399
V + N+ G + L + + ++ L + VD IVTDLPFGKR+G
Sbjct: 355 AVNRAANNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMG 414
Query: 400 SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSG 459
SK N+ LY L E+ ++ P GRA+LLT D K +AL +W+ + +N+ G
Sbjct: 415 SKKRNWNLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWQKVDTVWVNVGG 474
Query: 460 MKSFVFILNRTADLF 474
+++ V++L RT F
Sbjct: 475 LRAAVYVLIRTPQAF 489
>gi|355559470|gb|EHH16198.1| THUMP domain-containing protein 3 [Macaca mulatta]
Length = 503
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 156/497 (31%), Positives = 261/497 (52%), Gaps = 40/497 (8%)
Query: 1 MDLHKLVSTAQSDEKQ--------ITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRV 52
++LH+ S+ Q E +TI ATV TGFE +E +EK G + + G++
Sbjct: 14 VNLHENQSSVQVTESDLRSESELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDRGKI 73
Query: 53 FFNIDLKDIEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVAT 112
+F I ++ + +V LR +DN+ ++ F+++ F ++ + ++LKD +D+A
Sbjct: 74 YFVISVESLAQVHCLRSVDNLFVVVQEFQDYQF----------KQIKEEVLKD-FEDLAG 122
Query: 113 IQNKVLEIDWKKYMEIWKQITNYNGVLYPS--IEQFNKYNDILRHKKSIRNEINIKKE-S 169
++ W +++WK ++ I Q I ++ N+ N+KKE +
Sbjct: 123 ------KLPWSNPLKVWKINASFKKKKAKRKKINQNLSKEKINNGQEVKINQRNVKKEFT 176
Query: 170 SCETEPQVNNVQIEKGDLQNQELKEIDINSMCSSQNQ--KTNFTNPEENLLKFRVTCNRV 227
S + + + + +E+ + + + SS+++ +++ E +LKFRVTCNR
Sbjct: 177 SHALDSHI--LDYYENPAIKEEVSTLVGDDLASSKDETDESSKEETEPQVLKFRVTCNRA 234
Query: 228 G-KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRN 286
G KH TS E+ R F G + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRN
Sbjct: 235 GEKHCFTSNEAARDFEGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRN 294
Query: 287 IVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEK 346
I F TTL+ T+AY M+RL P+P D+ +DPMCG G IP+E + + F + GD N
Sbjct: 295 ITHFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWTDCFHIAGDNNPL 354
Query: 347 LVLKTQANVLH-------NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVG 399
V + N+ G + L + + ++ L + VD IVTDLPFGKR+G
Sbjct: 355 AVNRAANNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMG 414
Query: 400 SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSG 459
SK N+ LY L E+ ++ P GRA+LLT D K +AL +W+ + +N+ G
Sbjct: 415 SKKRNWNLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGG 474
Query: 460 MKSFVFILNRTADLFDY 476
+++ V++L RT F Y
Sbjct: 475 LRAAVYVLIRTPQAFVY 491
>gi|410919639|ref|XP_003973291.1| PREDICTED: LOW QUALITY PROTEIN: THUMP domain-containing protein
3-like [Takifugu rubripes]
Length = 474
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 150/468 (32%), Positives = 246/468 (52%), Gaps = 60/468 (12%)
Query: 17 ITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFI 76
+T+ ATV TGFE EE +EK GR++F I + +V LR +DN+ +
Sbjct: 33 VTVGATVPTGFEHTAAEEVKEK---------XRGRIYFPITTDKLFQVHLLRSVDNLFVV 83
Query: 77 IATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYN 136
+ ++++ F K ++E++ LK++ + +K + W +E+WK
Sbjct: 84 VDRYDHYTF--KESKEET------------LKELQELASK---LPWTNALEVWK------ 120
Query: 137 GVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQ--IEKGDL-QNQELK 193
N + KK R K S +T+P V E+ DL Q
Sbjct: 121 ------------LNRSFKKKKCFR-----KGGSGAKTKPNTEAVDATTEEQDLPQAAAAV 163
Query: 194 EIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFGGKLNDTYFWL 252
E N + +++ PE ++KFRVTC+R G KH+ +S E+ R FGG + + + W
Sbjct: 164 ETQANVEGIPEEEESTEAAPEAKVIKFRVTCSRAGDKHSFSSNEAARDFGGAVQEFFQWK 223
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPG 312
D+ +D+++ L I +E +G+ +T+ SLHRRNI F TTL+ T+ Y M+RL P
Sbjct: 224 ADMTKFDVEVLLNIHNDEVVIGIALTEESLHRRNISHFGPTTLRSTLCYGMLRLCKPQAS 283
Query: 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH------NSGNLNREL 366
D+ LDPMCG G IP+E ++ + +F+V GD N+ V +T NV H + G+ + +
Sbjct: 284 DIILDPMCGTGAIPLEGAIEFNSSFYVAGDNNDMAVNRTVNNVFHIQRRRADKGSASG-M 342
Query: 367 KVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA 426
+ + ++ L + + +D I+TD+PFGKR+GS+ N+ LY L E+ ++ RP G+A
Sbjct: 343 PIDTVRWDLCSLPIRTSSIDIIITDMPFGKRMGSRKKNWDLYPSCLREMARVCRPGSGKA 402
Query: 427 ILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
+LLT D+K +AL LW+ + +N+ G+ + VF+L RTA+ F
Sbjct: 403 VLLTQDKKCFSKALSRMGGLWRKLHTVWVNVGGLHAGVFLLKRTANTF 450
>gi|343958816|dbj|BAK63263.1| THUMP domain containing 3 [Pan troglodytes]
Length = 507
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 158/494 (31%), Positives = 259/494 (52%), Gaps = 47/494 (9%)
Query: 4 HKLVSTAQSD-----EKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDL 58
K V +SD E +TI ATV TGFE +E +EK G + + G+++F I +
Sbjct: 20 QKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDRGKIYFVISV 79
Query: 59 KDIEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVL 118
+ + +V LR +DN+ ++ F+++ F K T+E+ +LKD +D+A
Sbjct: 80 ESLAQVHCLRSVDNLFVVVQEFQDYQF--KQTKEE--------VLKD-FEDLAG------ 122
Query: 119 EIDWKKYMEIWKQITNYNGVLYPS--IEQFNKYNDILRHKKSIRNEINIKKE-SSCETEP 175
++ W +++WK ++ I Q + I ++ ++ N+KKE +S +
Sbjct: 123 KLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHALDS 182
Query: 176 QVNNVQIEKGDLQNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRVTCNRVG 228
+ + +N +KE D++++ C + +++ E +LKFRVT +R G
Sbjct: 183 HILDY------YENPAIKE-DVSTLVGDDLASCKDETDESSKEETEPQVLKFRVTYHRAG 235
Query: 229 -KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
KH TS E+ R FGG + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI
Sbjct: 236 EKHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNI 295
Query: 288 VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKL 347
F TTL+ T+AY M+RL P+P D+ +DPMCG G IP+E + + F + GD N
Sbjct: 296 THFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGDNNPLA 355
Query: 348 VLKTQANVLH-------NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGS 400
V + N+ G + L + + ++ L + VD IVTDLPFGKR+GS
Sbjct: 356 VNRAANNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMGS 415
Query: 401 KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGM 460
K N+ LY L E+ ++ P GRA+LLT D K +AL +W+ + +N+ G+
Sbjct: 416 KKRNWNLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGGL 475
Query: 461 KSFVFILNRTADLF 474
++ V++L RT F
Sbjct: 476 RAAVYVLIRTPQAF 489
>gi|47229617|emb|CAG06813.1| unnamed protein product [Tetraodon nigroviridis]
Length = 458
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 149/463 (32%), Positives = 238/463 (51%), Gaps = 46/463 (9%)
Query: 18 TIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFII 77
TI ATV TGFE EE +EK G D+L+ K GR++F I + +V LR +DN+ ++
Sbjct: 35 TIGATVPTGFEPTAAEEVREKIGVDVLISKDRGRIYFPITTDKLFQVHLLRSVDNLFVVV 94
Query: 78 ATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNG 137
+++++ F K+E+ LK++ + +K + W +E+W+
Sbjct: 95 DSYDHYSFKE--------SKEET------LKELQELASK---LPWTDALEVWR------- 130
Query: 138 VLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQELKEIDI 197
+ R K + S + + + E+ DL E +
Sbjct: 131 --------------LNRSFKKKKGYRKGGAGSKMKPSNEAGDAAAEEHDLPPAAAAEEKV 176
Query: 198 NSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFGGKLNDTYFWLVDLD 256
S ++ + + KFRVTC+R G KH+ +S E+ R FGG + + + W D+
Sbjct: 177 ESGADVEDSTEGPHGAK--VTKFRVTCSRAGDKHSFSSNEAARDFGGAVQEFFQWKADMT 234
Query: 257 DYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFL 316
+D+++ L I E +G+ +T+ SLHRRNI F TTL+ T+ Y M+RL P D+ L
Sbjct: 235 KFDVEVLLNIHNEEVVIGIALTEESLHRRNISHFGPTTLRSTLCYGMLRLCKPQASDIIL 294
Query: 317 DPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL-VCNV 375
DPMCG G IP+E ++ + +F++ GD NE V +T N+ H + L + V
Sbjct: 295 DPMCGTGAIPLEGAIEFSASFYLAGDNNEMAVNRTVNNICHIQKRRAEKGSACGLPIDTV 354
Query: 376 R-QLCFKP---ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431
R LC P + +D I+TD+PFGKR+GSK N+ LY L E+ ++ RP G+A+LLT
Sbjct: 355 RWDLCSLPVRTSSIDIIITDMPFGKRMGSKKKNWDLYPSCLREMARVCRPGSGKAVLLTQ 414
Query: 432 DRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
D+K +AL LW+ + +N+ G+ + VF+L RTA +F
Sbjct: 415 DKKCFSKALSRMGGLWRKLHTVWVNVGGLHAGVFLLKRTASVF 457
>gi|307210239|gb|EFN86889.1| THUMP domain-containing protein 3 [Harpegnathos saltator]
Length = 413
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/473 (32%), Positives = 240/473 (50%), Gaps = 75/473 (15%)
Query: 1 MDLHKLV-STAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLK 59
MD KL+ + S + I ATV TGFE ++E +EK +K G+++FN+
Sbjct: 1 MDRIKLLFDESLSKDDAFMICATVDTGFEWQAIDEHREKVSNTSEPVKERGKIYFNLQWD 60
Query: 60 DIEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLE 119
EKV+E+R IDNIL I+A F F + T++++ ++ +L KD ++
Sbjct: 61 QYEKVQEMRSIDNIL-IVADVRTFTFHD--TDKEADKEANLELFKDAVQK---------H 108
Query: 120 IDWKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNN 179
++ K +++WK++ + G +YP++E++N + + + E E EP+
Sbjct: 109 MNLNKALDMWKRVACFMGEIYPTLEEYNSAKE--------QAAVTTVTEPVTEAEPETTK 160
Query: 180 VQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESER 239
+ K + E KE DI LKFRVTC R G HT S +
Sbjct: 161 GR--KRGVDPSESKEGDI--------------------LKFRVTCERSGNHTFESTDVAC 198
Query: 240 AFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTI 299
GG+L Y W+VDL Y +++ ++ + L VT S HRRNIV F TTL+ TI
Sbjct: 199 VVGGELQTKYHWIVDLSKYHLEVICKLIEQQLITLLRVTHESKHRRNIVSFGPTTLRSTI 258
Query: 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNS 359
YN++RLA+P PGD+ +DPMCG G+IP+E +L++ H +CGD N K V +T++N
Sbjct: 259 CYNLLRLANPKPGDIVIDPMCGSGSIPIEAALAFSHLCILCGDKNSKAVERTKSN----- 313
Query: 360 GNLNRELKVSPLVCNVRQLCFKPACVDG--IVTDLPFGKRVGSKSNNFLLYRLFLIEIGK 417
+DG + FGKR G KSNN LY+ FL+E+G+
Sbjct: 314 -------------------------IDGSETAARILFGKRSGKKSNNERLYKQFLLELGR 348
Query: 418 IVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRT 470
+V+ + GR +LLT DR+ A L++ + + + + G++ ++L RT
Sbjct: 349 VVKLRSGRLVLLTHDRRSFNYAFRAAGDLFQLMRAVNVKIGGLQVIAYVLKRT 401
>gi|443693668|gb|ELT94984.1| hypothetical protein CAPTEDRAFT_229121 [Capitella teleta]
Length = 440
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 150/464 (32%), Positives = 231/464 (49%), Gaps = 83/464 (17%)
Query: 14 EKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNI 73
E+ IEA++V GFE + EE EK G + GRV F + + D K +L IDN+
Sbjct: 21 EEYCEIEASIVAGFEPLAEEEIMEKLG--VTSTHERGRVNFRMKICDARKALKLCSIDNL 78
Query: 74 LFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQIT 133
+ ++ + +F FS KD + I++ V +DWK +++WKQ
Sbjct: 79 MVVMNHYRDFPFS-----------------KDCDTAIQQIRDLVPGVDWKTGLKVWKQFD 121
Query: 134 NYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQELK 193
++ + P + N+ KE+ E
Sbjct: 122 DFPHPVLP-----------------VAYPANLPKENPTE--------------------- 143
Query: 194 EIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRV-GKHTVTSMESERAFGGKLNDTYFWL 252
+++KT L KFR TC R GKH+ S ++ AFGG +ND + W
Sbjct: 144 ----------EDKKTL-------LPKFRATCYRSHGKHSFQSPQAAAAFGGVINDYFAWN 186
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPG 312
VDL++++I+ L + + Y + +T+TSLH+R+IV+F TTL+ TIAYNM+R+ PG
Sbjct: 187 VDLENHNINAVLIVEGSNMYAAIELTKTSLHKRHIVKFGYTTLRGTIAYNMLRMCKIKPG 246
Query: 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELK----- 367
DV DPMCG G +P+E +++YP +CGDI E T+ N+ ++ N R+L+
Sbjct: 247 DVVCDPMCGSGVLPIEAAVNYPDAQHLCGDIYEFCAPSTKMNI--DAVNKKRKLENQGMI 304
Query: 368 -VSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA 426
+ + L VD VTDLPFGKR GSK N++LY L E+ ++ RP GRA
Sbjct: 305 PLDAFTWDASNLPLPDKSVDVFVTDLPFGKRSGSKMRNWVLYPKVLKELARVSRPITGRA 364
Query: 427 ILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRT 470
LT D + ++ LH LWK + I I++ G+ + V++L+RT
Sbjct: 365 CFLTQDTRCFLKTLHNLPGLWKRTRTIGISIGGLAASVYVLHRT 408
>gi|390368496|ref|XP_001184442.2| PREDICTED: THUMP domain-containing protein 3-like
[Strongylocentrotus purpuratus]
Length = 483
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 148/479 (30%), Positives = 231/479 (48%), Gaps = 75/479 (15%)
Query: 18 TIEATVVTGFEDVVVEECQEKFGKD---LLLMKSIGRVFFNIDLKDIEKVKELRGIDNIL 74
T+ ATV +GFE + +EC EK G L K GR+ F + ++DIEK +LR +DN+
Sbjct: 14 TVCATVNSGFEHLATQECIEKLGSSSSSRTLKKFRGRIIFELPVQDIEKATQLRSVDNLS 73
Query: 75 FIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITN 134
++ ++ DL ++K K V + K+LE++WK ++ W+ T
Sbjct: 74 VVLNHIKDV-----------------DLHQEKEKVVDELCQKILEMNWKLALDTWRHFTK 116
Query: 135 YNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQELKE 194
L P + + +E+N K +S + E
Sbjct: 117 SELCLDPLPGKLSSSKPAPHQDMETESEVNTKDKS-------------------DDSPGE 157
Query: 195 IDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFGGKLNDTYFWLV 253
+ + +++ FRVTC R G KH +S + A G +N+ + W V
Sbjct: 158 VPLGEEVTAERPT------------FRVTCTRTGEKHDFSSRDVAPAVGSLINEAFGWPV 205
Query: 254 DLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGD 313
+ DYDI++ + I + V + +T+ SLHRRNI F ITTLK TIAY M+RLA P PG+
Sbjct: 206 KMKDYDIEVVVNILEDSTLVSISLTKESLHRRNITHFGITTLKSTIAYCMLRLAQPKPGE 265
Query: 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP--- 370
+ +DPMCG G IP+E + + + V GD+N+ V +T+AN L + RE +
Sbjct: 266 IIMDPMCGVGGIPLEGLIDWKSCYVVSGDMNDVAVERTKAN-LDSLAERRREKHIERPDI 324
Query: 371 ----LVCNVRQLCFKPACVDGIVTDLPFG---------------KRVGSKSNNFLLYRLF 411
L +V L K + VD VTDL + +G++ NN+ LY
Sbjct: 325 ENDVLKWDVTNLPLKSSSVDVFVTDLEIVLEQKKQFTASLQGVLQGLGNRKNNWSLYHKC 384
Query: 412 LIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRT 470
L E+ ++ RP IGRA+LLT D+K ++Q L +W+ + IN G+K+ V++L R
Sbjct: 385 LEEMARVCRPGIGRAVLLTQDKKCMVQTLQRCHHIWRKKTVTFINHGGLKACVYLLQRA 443
>gi|391339299|ref|XP_003743989.1| PREDICTED: THUMP domain-containing protein 3-like [Metaseiulus
occidentalis]
Length = 394
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 134/464 (28%), Positives = 223/464 (48%), Gaps = 80/464 (17%)
Query: 12 SDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGID 71
+ E Q IEATVV+G E + EE +EKFG + + GRV+F + ++++ +L+ +D
Sbjct: 10 TGENQTEIEATVVSGLESMAREEIREKFGVRAEICR--GRVWFLLPADRVKEIFQLQSVD 67
Query: 72 NILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQ 131
N+ ++ F ++ + D+ D+ I I+W + + W
Sbjct: 68 NLFVVVERFA-----------------AAEFVGDEALDLEWIYRMAARINWDRGVRAWTD 110
Query: 132 ITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQE 191
I L D QV+ +EK
Sbjct: 111 IRAPTRTLEECYALMGSAGD------------------------QVSKENVEK------- 139
Query: 192 LKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGK-HTVTSMESERAFGGKLNDTYF 250
L KFRVTCNR GK H TSM++ FG +ND +
Sbjct: 140 -------------------------LPKFRVTCNRSGKEHKFTSMQAASKFGAGVNDFFH 174
Query: 251 WLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPI 310
W VD+ ++D++I I ++ + + +T +SLH RN+VEF T+L+ TIAY M+RL
Sbjct: 175 WQVDMKNFDMNIIANIADSKMDILIALTTSSLHHRNLVEFGPTSLRSTIAYCMLRLCRVK 234
Query: 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370
PG++ +DP+CGGG+IP+E + ++ +F +C D +E + + ++N+ HNS E +
Sbjct: 235 PGEIIVDPLCGGGSIPIEAARNFSDSFVLCADHHELAIPRCRSNINHNS----LEGRTDL 290
Query: 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430
+ + R + + A +D +VTDLPFGKR+G K +N LYR L + + P RA+LLT
Sbjct: 291 IQWDSRNMPLRNATIDVLVTDLPFGKRMGCKRDNRCLYRELLQSMARASVPGTARAVLLT 350
Query: 431 SDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
DR+ L A+ W+ + N+ G+ + + + +RT++ +
Sbjct: 351 QDRRSLTLAVSQCHKWWRAGYTVACNIGGLDAIIMVCHRTSEPY 394
>gi|156381326|ref|XP_001632216.1| predicted protein [Nematostella vectensis]
gi|156219269|gb|EDO40153.1| predicted protein [Nematostella vectensis]
Length = 382
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 146/453 (32%), Positives = 223/453 (49%), Gaps = 79/453 (17%)
Query: 21 ATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIATF 80
ATV+TG E V V ECQEK D ++ GR++F+I L +E K LR I+ + ++
Sbjct: 6 ATVITGLESVAVLECQEKL--DFKPVRERGRIYFDISLDSLETAKNLRSIERLFVVVDRI 63
Query: 81 ENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNGVLY 140
E+FG + K+ SD+L+ K D+A ++ WK +E WK T Y G +
Sbjct: 64 EDFGST----------KENSDVLQ-KFYDLAK------QLHWKSALETWKAFTGYQGPV- 105
Query: 141 PSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQELKEI-DINS 199
+ + ++ K+ S E E+K +
Sbjct: 106 ------------------TKTDDDVAKQLSAE------------------EIKSLPSFRV 129
Query: 200 MCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYD 259
CS +F + + + GG LND + W V+L + D
Sbjct: 130 TCSRSGNNHDFKSSD----------------------AAAQLGGGLNDLFHWPVNLSNAD 167
Query: 260 IDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPM 319
I+I L + + VG+ +T+ + RRNI F TTLK ++AY +++LA GDV DPM
Sbjct: 168 IEIILNVVDDRVVVGVALTRETQGRRNIEHFGPTTLKSSLAYCLLKLADIKTGDVVCDPM 227
Query: 320 CGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC 379
CGGG+IP+E L++P +CGD +E +T AN+ + NR+L + +V L
Sbjct: 228 CGGGSIPIEALLNWPLCVHICGDHHELAPSRTLANLSALTSKQNRKLPLDIYQWDVCNLP 287
Query: 380 FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQA 439
FK +D IVTDLPFGK+ GSK NN+ LY L E+ ++ P+ GRA++LT D+K L +
Sbjct: 288 FKTNSMDVIVTDLPFGKKSGSKQNNWSLYPQALDELARVCPPKTGRAVILTHDKKALAKT 347
Query: 440 LHITSALWKCRKQIKINMSGMKSFVFILNRTAD 472
L WK + + +NM G++S V+ L RT +
Sbjct: 348 LQRMQKWWKVKLTLWVNMGGLQSGVYSLLRTTN 380
>gi|426339401|ref|XP_004033639.1| PREDICTED: THUMP domain-containing protein 3 [Gorilla gorilla
gorilla]
Length = 536
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 153/524 (29%), Positives = 256/524 (48%), Gaps = 78/524 (14%)
Query: 4 HKLVSTAQSD-----EKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDL 58
K V +SD E +TI ATV TGFE +E +EK G + + G+++F I +
Sbjct: 20 QKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDRGKIYFVISV 79
Query: 59 KDIEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVL 118
+ + +V LR +DN+ ++ F+++ F K T+E+ +LKD +D+A
Sbjct: 80 ESLAQVHCLRSVDNLFVVVQEFQDYQF--KQTKEE--------VLKD-FEDLAG------ 122
Query: 119 EIDWKKYMEIWKQITNYNGVLYPS--IEQFNKYNDILRHKKSIRNEINIKKE-SSCETEP 175
++ W +++WK ++ I Q + I ++ ++ N+KKE +S +
Sbjct: 123 KLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHALDS 182
Query: 176 QVNNVQIEKGDLQNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRVTCNRVG 228
+ N +N +KE D++++ C + ++ E +LKFRVTCNR G
Sbjct: 183 HILNY------YENPAIKE-DVSTLIGDDLASCKDETDDSSKEETEPQVLKFRVTCNRAG 235
Query: 229 -KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
KH TS E+ R FGG + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI
Sbjct: 236 EKHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNI 295
Query: 288 VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKL 347
F TTL+ T+AY M+RL P+P D+ +DPMCG G IP+E + + F + GD N L
Sbjct: 296 THFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGD-NNPL 354
Query: 348 VLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK----------------PACVDGIV-- 389
+ AN + + ++ + P++ + + + GI
Sbjct: 355 AVNRAANNIASLLTKSQIKEGPPVITSFTNFILQIHHPIIFSLVLLNIHDNEVIVGIALT 414
Query: 390 ------------------TDLPFGK-RVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430
+ L +G R+GSK N+ LY L E+ ++ P GRA+LLT
Sbjct: 415 EESLHRRNITHFGPTTLRSTLAYGMLRMGSKKRNWNLYPACLREMSRVCTPTTGRAVLLT 474
Query: 431 SDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
D K +AL +W+ + +N+ G+++ V++L RT F
Sbjct: 475 QDTKCFTKALSGMRHVWRKVDTVWVNVGGLRAAVYVLIRTPQAF 518
>gi|326928190|ref|XP_003210264.1| PREDICTED: THUMP domain-containing protein 3-like [Meleagris
gallopavo]
Length = 488
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 142/427 (33%), Positives = 223/427 (52%), Gaps = 49/427 (11%)
Query: 64 VKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWK 123
V LR +DN+ ++ F+++ F K T+ED+ LKD+ + V ++ W
Sbjct: 80 VHRLRSVDNLFVVVQEFKDYQF--KETKEDA------------LKDLEGL---VKKLPWT 122
Query: 124 KYMEIWKQITNYNGVLYPSIEQFNKYN-DILRHKKSIRN---EINIKKESSCETEPQVNN 179
+ IW+ N L + K N K+ +R+ E + + + N
Sbjct: 123 DPLRIWE----LNNSLKKKKTKRKKQNLQRTASKEKLRDGGEEEQDDRAVGGQEDCAPNT 178
Query: 180 VQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEEN---LLKFRVTCNRVG-KHTVTSM 235
E Q+ E + + +SQN++ + +E +LKFRVTCNR G KH+ TS
Sbjct: 179 AGAEPAVGQSAEEMQGE-----ASQNEEDDNEQKDEGDAKVLKFRVTCNRAGDKHSFTSN 233
Query: 236 ESERAFG--GKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNIT 293
E+ G + + + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F T
Sbjct: 234 EAAXXXXXXGAVQEHFQWKADMTNFDVEVLLNIHNNEVVVGIALTEESLHRRNITHFGPT 293
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353
TL+ T+AY M+RL P P D+ +DPMCG G IP+E ++ +P + + GD N + V + +
Sbjct: 294 TLRSTLAYGMLRLCDPQPTDIIIDPMCGTGAIPIEGAMEWPGCYHIAGDNNPQAVKRAAS 353
Query: 354 NVLH-NSGNLNRELKVS---PL------VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSN 403
N+ N N+E S PL +CN L + VD IVTD+PFGKR+GSK
Sbjct: 354 NICSLLKKNENKESSASLGVPLDIVQWDICN---LPLRTGSVDVIVTDMPFGKRIGSKKK 410
Query: 404 NFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSF 463
N+ LY L+E+G+I P GRA+LLT D+K +AL +W+ + +N+ G+ +
Sbjct: 411 NWDLYPACLMEMGRICTPGTGRAVLLTQDKKCFAKALSRLGHIWRKNHTVWVNVGGLHAA 470
Query: 464 VFILNRT 470
V++L RT
Sbjct: 471 VYLLKRT 477
>gi|5911963|emb|CAB55956.1| hypothetical protein [Homo sapiens]
Length = 364
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 162/284 (57%), Gaps = 8/284 (2%)
Query: 199 SMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFGGKLNDTYFWLVDLDD 257
+ C + +++ E +LKFRVTCNR G KH TS E+ R FGG + D + W D+ +
Sbjct: 63 ASCKDETDESSKEETEPQVLKFRVTCNRAGEKHCFTSNEAARDFGGAVQDYFKWKADMTN 122
Query: 258 YDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLD 317
+D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY M+RL P+P D+ +D
Sbjct: 123 FDVEVLLNIHDNEVIVGIALTEESLHRRNITHFGPTTLRSTLAYGMLRLCDPLPYDIIVD 182
Query: 318 PMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH-------NSGNLNRELKVSP 370
PMCG G IP+E + + F + GD N V + N+ G + L +
Sbjct: 183 PMCGTGAIPIEGATEWSDCFHIAGDNNPLAVNRAANNIASLLTKSQIKEGKPSWGLPIDA 242
Query: 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430
+ ++ L + VD IVTDLPFGKR+GSK N+ LY L E+ ++ P GRA+LLT
Sbjct: 243 VQWDICNLPLRTGSVDIIVTDLPFGKRMGSKKRNWNLYPACLREMSRVCTPTTGRAVLLT 302
Query: 431 SDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
D K +AL +W+ + +N+ G+++ V++L RT F
Sbjct: 303 QDTKCFTKALSGMRHVWRKVDTVWVNVGGLRAAVYVLIRTPQAF 346
>gi|349605547|gb|AEQ00749.1| THUMP domain-containing protein 3-like protein, partial [Equus
caballus]
Length = 336
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 170/289 (58%), Gaps = 15/289 (5%)
Query: 211 TNPEENLLKFRVTCNRVG-KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYN 269
TNPE +LKFRVTCNR G KH +S E+ R FGG + + + W D+ ++D+++ L I +
Sbjct: 54 TNPE--VLKFRVTCNRAGEKHCFSSNEAARDFGGAVQEYFKWKADMTNFDVEVLLNIHDH 111
Query: 270 EAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
E VG+ +T+ SLHRRNI F TTL+ T+AY M+RL +P P D+ +DPMCG G IP+E
Sbjct: 112 EIVVGIALTEESLHRRNITHFGPTTLRSTVAYGMLRLCAPQPTDIIVDPMCGTGAIPIEG 171
Query: 330 SLSYPHTFFVCGDINEKLVLKTQANVLHN--------SGNLNRELKVSPLVCNVRQLCFK 381
+ + + + + GD N L + AN + + G + L + + ++ L +
Sbjct: 172 ATEWSNCYHIAGD-NNPLAVNRAANNISSLLSKSQIKEGRPSWGLPIDAVQWDICNLPLR 230
Query: 382 PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441
VD IVTD+PFGKR+GSK N+ LY L E+ ++ RP GRA+LLT D+K +AL
Sbjct: 231 TGSVDIIVTDMPFGKRMGSKKRNWNLYPACLREMSRVCRPGTGRAVLLTQDKKCFTKALS 290
Query: 442 ITSALWKCRKQIKINMSGMKSFVFILNRTADLFDYAIHGLKEKHKGKPF 490
+W+ + +N+ G+ + V++L RT F +H ++ + P+
Sbjct: 291 GMGHVWRKVHTVWVNIGGLHAAVYLLKRTPQAF---VHPSEQDGERTPW 336
>gi|405978057|gb|EKC42472.1| THUMP domain-containing protein 3 [Crassostrea gigas]
Length = 542
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 165/280 (58%), Gaps = 12/280 (4%)
Query: 220 FRVTCNRVGK-HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVT 278
FRVTCNR G+ H SM + FGG + + + W V + +DI++ L I NE V L +T
Sbjct: 258 FRVTCNRNGQGHPFDSMGAASNFGGAVYNYFHWNVSMKQFDIEVILNIEGNEVSVCLALT 317
Query: 279 QTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFF 338
+ SLHRR I F T L+ T AYNM+RL PG++ DPMCGGG+IP++ ++S+
Sbjct: 318 RESLHRRYITAFGPTALRATHAYNMLRLCKLQPGEIICDPMCGGGSIPLQSAVSWDKCVS 377
Query: 339 VCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRV 398
+CGDI + +T+ N+ N ++ + + + +V L + +D +TDLPFG RV
Sbjct: 378 ICGDIINNALKRTKENI--NYVAQSQPISLDVVRWDVTNLPLRTESMDVCITDLPFGIRV 435
Query: 399 GSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMS 458
GSK NN+ LY L+E+ ++ R + GRA LLT D+K + +AL +T+ WKCR + +NM
Sbjct: 436 GSKMNNWKLYPGALMEMARVTRVEKGRACLLTQDKKCINKALSVTARYWKCRNMVGLNMG 495
Query: 459 GMKSFVFILNRT---------ADLFDYAIHGLKEKHKGKP 489
G+ + V++L+RT A + A+ K+K G P
Sbjct: 496 GLAACVYVLHRTVEKYNAEDAAQMLSTALEHAKQKEGGSP 535
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 67/118 (56%), Gaps = 19/118 (16%)
Query: 19 IEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIA 78
IEATV +GFE+VV E+ +EKF ++ + GR+ F + +KD++KV +L GIDN +++
Sbjct: 16 IEATVASGFENVVKEDAEEKF--NVPVDAKRGRIAFKVPMKDVKKVLDLGGIDNCFVVMS 73
Query: 79 TFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYN 136
F N F +D+L+ +A ++ V ++WK ++ W +I +++
Sbjct: 74 RFSNVNFP-----------------EDELECMALLRKIVYNVNWKNGLDAWSKIFSFH 114
>gi|395824739|ref|XP_003785614.1| PREDICTED: THUMP domain-containing protein 3 [Otolemur garnettii]
Length = 599
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 135/430 (31%), Positives = 221/430 (51%), Gaps = 42/430 (9%)
Query: 67 LRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYM 126
LR +DN+ ++ FE++ F +K + ++LKD +D+A ++ W + +
Sbjct: 6 LRSVDNLFVVVQEFEDYEF----------KKTKEEVLKD-FEDLAR------KLPWSEPL 48
Query: 127 EIWKQITNYNGVLYPS--IEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEK 184
++WK T + I Q + I K+ +E ++KKE N +
Sbjct: 49 KVWKINTTFKKKKTKRKKINQNSSKGKIDNGKEDKTDEADVKKELPG------NALDSHI 102
Query: 185 GDL-QNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSM 235
D +N +KE +I+++ C + ++ E +LKFRVTCNR G KH TS
Sbjct: 103 LDYYENPAIKE-EISTLVGDDLASCKDETDESAKQETEPQVLKFRVTCNRAGEKHCFTSN 161
Query: 236 ESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTL 295
E+ R FGG + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL
Sbjct: 162 EAARDFGGAIQDYFQWKADMTNFDVEVLLNIHGNEIIVGIALTEESLHRRNITHFGPTTL 221
Query: 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANV 355
+ T+AY M+RL P+P D+ +DPMCG G IP+E + + + + GD N V + N+
Sbjct: 222 RSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCYHIAGDNNPLAVNRAANNI 281
Query: 356 -------LHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLY 408
+ G + L + + ++ L + VD IVTD F R+GSK N+ LY
Sbjct: 282 SSLLTKSQNKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDXTFFYRMGSKKRNWNLY 341
Query: 409 RLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILN 468
L E+ ++ P GRA+LLT D K +AL +W+ + +N+ G+++ V++L
Sbjct: 342 PACLREMSRVCTPATGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNIGGLRAAVYVLG 401
Query: 469 RTADLFDYAI 478
RT F + +
Sbjct: 402 RTPQPFVHPV 411
>gi|332816465|ref|XP_001145001.2| PREDICTED: THUMP domain-containing protein 3 isoform 5 [Pan
troglodytes]
Length = 479
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 144/494 (29%), Positives = 240/494 (48%), Gaps = 75/494 (15%)
Query: 4 HKLVSTAQSD-----EKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDL 58
K V +SD E +TI ATV TGFE +E +EK G + + G+++F I +
Sbjct: 20 QKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDRGKIYFVISV 79
Query: 59 KDIEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVL 118
+ + +V LR +DN+ ++ F+++ F K T+E+ +LKD +D+A
Sbjct: 80 ESLAQVHCLRSVDNLFVVVQEFQDYQF--KQTKEE--------VLKD-FEDLAG------ 122
Query: 119 EIDWKKYMEIWKQITNYNGVLYPS--IEQFNKYNDILRHKKSIRNEINIKKE-SSCETEP 175
++ W +++WK ++ I Q + I ++ ++ N+KKE +S +
Sbjct: 123 KLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHALDS 182
Query: 176 QVNNVQIEKGDLQNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRVTCNRVG 228
+ + +N +KE D++++ C + +++ E +LKFRVTCNR G
Sbjct: 183 HILDY------YENPAIKE-DVSTLVGDDLASCKDETDESSKEETEPQVLKFRVTCNRAG 235
Query: 229 -KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
KH TS E+ R FGG + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI
Sbjct: 236 EKHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNI 295
Query: 288 VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKL 347
F TTL+ T+AY M+RL P+P D+ +DPMCG G IP+E + + F + GD N
Sbjct: 296 THFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGDNNPLA 355
Query: 348 VLKTQANVLH-------NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGS 400
V + N+ G + L + + ++ L + VD IVTDLPFGKR
Sbjct: 356 VNRAANNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRASC 415
Query: 401 KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGM 460
+ Q + S +H +W+ + +N+ G+
Sbjct: 416 TTT------------------QDTKCFTKLSGMRH----------VWRKVDTVWVNVGGL 447
Query: 461 KSFVFILNRTADLF 474
++ V++L RT F
Sbjct: 448 RAAVYVLIRTPQAF 461
>gi|355746545|gb|EHH51159.1| THUMP domain-containing protein 3 [Macaca fascicularis]
Length = 543
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 152/538 (28%), Positives = 259/538 (48%), Gaps = 82/538 (15%)
Query: 1 MDLHKLVSTAQSDEKQ--------ITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRV 52
++LH+ S+ Q E +TI ATV TGFE +E +EK G + + G++
Sbjct: 14 VNLHENQSSVQVTESDLRSESELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDRGKI 73
Query: 53 FFNIDLKDIEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVAT 112
+F I ++ + +V LR +DN+ ++ F+++ F ++ + ++LKD +D+A
Sbjct: 74 YFVISVESLAQVHCLRSVDNLFVVVQEFQDYQF----------KQIKEEVLKD-FEDLAG 122
Query: 113 IQNKVLEIDWKKYMEIWKQITNYNGVLYPS--IEQFNKYNDILRHKKSIRNEINIKKE-S 169
++ W +++WK ++ I Q I ++ N+ N+KKE +
Sbjct: 123 ------KLPWSNPLKVWKINASFKKKKAKRKKINQNLSKEKINNGQEVKINQRNVKKEFT 176
Query: 170 SCETEPQVNNVQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEEN---LLKFRVTCNR 226
S + + + + +E+ + + + SS+++ T+ ++ EE +LKFRVTCNR
Sbjct: 177 SHALDSHI--LDYYENPAIKEEVSTLVGDDLASSKDE-TDESSKEETEPQVLKFRVTCNR 233
Query: 227 VG-KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRR 285
G KH TS E+ R FGG + D + W D+ ++D+++ L I NE VG+ +T+ SLHRR
Sbjct: 234 AGEKHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRR 293
Query: 286 NIVEFNITTLKPTIAYNMVRL--------------------ASPIPGDVFLDPMCGGGT- 324
NI F TTL+ T+AY M+R+ A + G + + GT
Sbjct: 294 NITHFGPTTLRSTLAYGMLRIYLVCQTLLDEELKKILDLTSAPRLVGKRKGEEIINSGTS 353
Query: 325 ----IP---------------VECSLSYPHTFFVCGDINEKLVLKTQANVLH-------N 358
+P V+ + + F + GD N V + N+
Sbjct: 354 AVAEVPTYKVLLGAAHKTAWRVKGATEWTDCFHIAGDNNPLAVNRAANNIASLLTKSQIK 413
Query: 359 SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKI 418
G + L + + ++ L + VD IVTDLPFGKR+GSK N+ LY L E+ ++
Sbjct: 414 EGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMGSKKRNWNLYPACLREMSRV 473
Query: 419 VRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLFDY 476
P GRA+LLT D K +AL +W+ + +N+ G+++ V++L RT F Y
Sbjct: 474 CTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGGLRAAVYVLIRTPQAFVY 531
>gi|196005727|ref|XP_002112730.1| hypothetical protein TRIADDRAFT_25997 [Trichoplax adhaerens]
gi|190584771|gb|EDV24840.1| hypothetical protein TRIADDRAFT_25997 [Trichoplax adhaerens]
Length = 293
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 111/254 (43%), Positives = 154/254 (60%), Gaps = 4/254 (1%)
Query: 220 FRVTCNRVGK-HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVT 278
FRVTCNRVGK H TSM+ FGG +ND W VDL + DI++ L I N + + +T
Sbjct: 37 FRVTCNRVGKDHQFTSMDCAAKFGGAINDLLHWRVDLSNPDINVILNIVENSINISIALT 96
Query: 279 QTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFF 338
SLHRRNI +F T L+ TIAYNM+RLA GD+ DPM GGG+I VE ++++ +F
Sbjct: 97 GASLHRRNITQFGPTALRSTIAYNMLRLADIQNGDIVCDPMAGGGSISVEGAVNWISSFH 156
Query: 339 VCGDINEKLVLKTQANVLHNSGNLN--RELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK 396
+CGD + L++ AN + +GN N R + + +V L + VD +V+D+PFGK
Sbjct: 157 ICGDNHHAAGLRSVANRDY-AGNQNNIRSMAMDVATWDVCCLPLRRNSVDIVVSDMPFGK 215
Query: 397 RVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKIN 456
R+GSK N+ LY L E+ +I R GRA+LLT D K + + L LWK R IN
Sbjct: 216 RIGSKHKNWKLYDHALSEMARICRCSSGRAVLLTQDSKVMTKVLQQYKHLWKRRHCYWIN 275
Query: 457 MSGMKSFVFILNRT 470
+ G+ + V++L RT
Sbjct: 276 IGGLTAAVYLLLRT 289
>gi|198413847|ref|XP_002126201.1| PREDICTED: similar to THUMP domain containing 3 isoform 1 [Ciona
intestinalis]
Length = 492
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 147/501 (29%), Positives = 237/501 (47%), Gaps = 98/501 (19%)
Query: 16 QITIEATVVTGFEDVVVEECQEKFGKDLLLMK-SIGRVFFNIDLKDIEKVKELRGIDNIL 74
++TI ATV TGFE V+E +K D++ + G+VFF + K+ +LR +D +
Sbjct: 12 EVTIGATVATGFEFTAVDEITKKI--DVVDYDITQGKVFFTATSECFAKIHQLRSVDKLF 69
Query: 75 FIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITN 134
++ +EN+ + D+ K+ ++ I + E+ W++ + W N
Sbjct: 70 LVVKRYENYVY---------------DVTKE--VELERIGSVAFELPWEQVEKYW----N 108
Query: 135 YNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQELKE 194
N + +F K R KK + ++ C + E DL+ E K
Sbjct: 109 ENRPFCIKMNKFQKQKLRERKKKRRQLNLD-----GCGGGDE------EDSDLEVWE-KS 156
Query: 195 IDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFGGKLNDTYFWLV 253
D+N FRVTCNRVG K +VTS E+E FGG + D W V
Sbjct: 157 TDVN---------------------FRVTCNRVGKKQSVTSPEAEYKFGGNVQDATGWNV 195
Query: 254 DLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGD 313
+L Y++++ L+I + V L +T SLH RNI F TTL+ TIAYNM+ L G+
Sbjct: 196 NLSCYNLEVLLEIGLDSLMVALSLTPFSLHHRNIEYFGRTTLRSTIAYNMLMLCKLKVGE 255
Query: 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNL----------- 362
V +DPMCG G+IP+E ++ + V GD + + + NV N+G L
Sbjct: 256 VVVDPMCGTGSIPLEGAMEWKGCLHVGGDNSGAAMERVSGNVGVNNGGLGVNLEKGDNLG 315
Query: 363 ---------------NRELKVSP--------------LVCNVRQLCFKPACVDGIVTDLP 393
NR L+++ + + +L ++ + +D VTDLP
Sbjct: 316 VSQVKRDSFEVNENGNRNLEINTEKISEEKLKYPVEVIRWDATRLPWRDSTIDVCVTDLP 375
Query: 394 FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQI 453
FGKR+GS+ +N +LY FL E+ ++ + RA LLT DR+ + A + LW ++ +
Sbjct: 376 FGKRMGSQHDNRVLYPRFLHELARVSKVGTSRACLLTYDRRSALNAFSKLNKLWSLKRTV 435
Query: 454 KINMSGMKSFVFILNRTADLF 474
+N+ G+++ V++L RT F
Sbjct: 436 NVNIGGLRAAVYLLGRTKHKF 456
>gi|297285332|ref|XP_001096880.2| PREDICTED: THUMP domain-containing protein 3 isoform 1 [Macaca
mulatta]
Length = 441
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 144/491 (29%), Positives = 239/491 (48%), Gaps = 90/491 (18%)
Query: 1 MDLHKLVSTAQSDEKQ--------ITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRV 52
++LH+ S+ Q E +TI ATV TGFE +E +EK G + + G++
Sbjct: 14 VNLHENQSSVQVTESDLRSESELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDRGKI 73
Query: 53 FFNIDLKDIEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVAT 112
+F I ++ + +V LR +DN+ ++ F+++ F ++ + ++LKD +D+A
Sbjct: 74 YFVISVESLAQVHCLRSVDNLFVVVQEFQDYQF----------KQIKEEVLKD-FEDLAG 122
Query: 113 IQNKVLEIDWKKYMEIWKQITNYNGVLYPS--IEQFNKYNDILRHKKSIRNEINIKKE-S 169
++ W +++WK ++ I Q I ++ N+ N+KKE +
Sbjct: 123 ------KLPWSNPLKVWKINASFKKKKAKRKKINQNLSKEKINNGQEVKINQRNVKKEFT 176
Query: 170 SCETEPQVNNVQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEEN---LLKFRVTCNR 226
S + + + + +E+ + + + SS+++ T+ ++ EE +LKFRVTCNR
Sbjct: 177 SHALDSHI--LDYYENPAIKEEVSTLVGDDLASSKDE-TDESSKEETEPQVLKFRVTCNR 233
Query: 227 VG-KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRR 285
G KH TS E+ R FGG + D + W D+ ++D+++ L I NE VG+ +T+ SLHRR
Sbjct: 234 AGEKHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRR 293
Query: 286 NIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINE 345
NI F TTL+ T+AY M L+ P G +P++
Sbjct: 294 NITHFGPTTLRSTLAYGM--LSKPSWG------------LPIDA---------------- 323
Query: 346 KLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNF 405
V +CN L + VD IVTDLPFGKR+GSK N+
Sbjct: 324 ----------------------VQWDICN---LPLRTGSVDIIVTDLPFGKRMGSKKRNW 358
Query: 406 LLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVF 465
LY L E+ ++ P GRA+LLT D K +AL +W+ + +N+ G+++ V+
Sbjct: 359 NLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGGLRAAVY 418
Query: 466 ILNRTADLFDY 476
+L RT F Y
Sbjct: 419 VLIRTPQAFVY 429
>gi|390352702|ref|XP_001184206.2| PREDICTED: THUMP domain-containing protein 3-like
[Strongylocentrotus purpuratus]
Length = 382
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 104/274 (37%), Positives = 152/274 (55%), Gaps = 24/274 (8%)
Query: 220 FRVTCNRVG-KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVT 278
FRVTC R G KH +S + A G +N+ + W V + DYDI++ + I + V + +T
Sbjct: 70 FRVTCTRTGEKHDFSSRDVAPAVGSLINEAFGWPVKMKDYDIEVVVNILEDSTLVSISLT 129
Query: 279 QTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFF 338
+ SLHRRNI F ITTLK TIAY M+RLA P PG++ +DPMCG G IP+E + + +
Sbjct: 130 KESLHRRNITHFGITTLKSTIAYCMLRLAQPKPGEIIMDPMCGVGGIPLEGLIDWKSCYV 189
Query: 339 VCGDINEKLVLKTQANVLHNSGNLNRELKVSP-------LVCNVRQLCFKPACVDGIVTD 391
V GD+N+ V +T+AN L + RE + L +V L K + VD VTD
Sbjct: 190 VSGDMNDVAVERTKAN-LDSLAERRREKHIERPDIENDVLKWDVTNLPLKSSSVDVFVTD 248
Query: 392 LPFG---------------KRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHL 436
L + +G++ NN+ LY L E+ ++ RP IGRA+LLT D+K +
Sbjct: 249 LEIVLEQKKQFTASLQGVLQGLGNRKNNWSLYHKCLEEMARVCRPGIGRAVLLTQDKKCM 308
Query: 437 IQALHITSALWKCRKQIKINMSGMKSFVFILNRT 470
+Q L +W+ + IN G+K+ V++L R
Sbjct: 309 VQTLQRCHHIWRKKTVTFINHGGLKACVYLLQRA 342
>gi|350591412|ref|XP_003132394.3| PREDICTED: THUMP domain-containing protein 3-like [Sus scrofa]
Length = 376
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 113/358 (31%), Positives = 187/358 (52%), Gaps = 37/358 (10%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ ++TI ATV TGFE +E +EK G + K G+++F+I ++ + +V LR
Sbjct: 32 SESEHLRVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDISVESLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ LKD + K + W ++IW
Sbjct: 92 VDNLFVVVQEFKDYQF--KETKEEV------------LKDFEELAGK---LPWSDPLKIW 134
Query: 130 K--QITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEK--G 185
K I Q I + +E ++KKE + NNV +
Sbjct: 135 KINTRFKKRKTKRKKISQNTSKEKIDNGQGDKTDEKDVKKEIT-------NNVLDSQILD 187
Query: 186 DLQNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMES 237
+N +KE +I+++ C + +++ + +LKFRVTCNR G KH +S E
Sbjct: 188 YYENLAIKE-EISTLVGDDLVSCKDETDESSKEETDPEVLKFRVTCNRAGEKHCFSSNEV 246
Query: 238 ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKP 297
R FGG + + + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+
Sbjct: 247 ARDFGGAVQEYFKWKADMTNFDVEVLLNIHDNEVVVGIALTEESLHRRNITHFGPTTLRS 306
Query: 298 TIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANV 355
T+AY M+RL +P P D+ +DPMCG G IP+E + + + + + GD N V + N+
Sbjct: 307 TLAYGMLRLCAPQPTDIIIDPMCGTGAIPIEGATEWSNCYHIAGDNNPLAVNRAANNI 364
>gi|260804957|ref|XP_002597354.1| hypothetical protein BRAFLDRAFT_66490 [Branchiostoma floridae]
gi|229282617|gb|EEN53366.1| hypothetical protein BRAFLDRAFT_66490 [Branchiostoma floridae]
Length = 555
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 148/528 (28%), Positives = 237/528 (44%), Gaps = 108/528 (20%)
Query: 1 MDLHKLVSTAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKD 60
+D+ + +E I I+ATV +G E + EE +EK G ++ K GR+ F+ KD
Sbjct: 4 LDVEGIGCCVVQNEDLIRIDATVTSGLEQIAKEEVEEKLGTKVV--KRRGRIRFDTPYKD 61
Query: 61 I-EKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLE 119
K++ LR ++N+ ++A FE G + DS D+ +LK + T
Sbjct: 62 FAHKIQSLRTLENLHVVVADFEKEGLAT-----DS---DKDAVLKHFYQLAKTF------ 107
Query: 120 IDWKKYMEIWKQITNY--------------NGVLYPSIEQFNKYNDILRHKK-------S 158
DW + WK T + + +Y +I+ ++
Sbjct: 108 -DWGPAVCAWKTFTGAFPHEPGPPKKKQKIQDSAKDTSKMLERYENIISREEMDGPDSDK 166
Query: 159 IRNEINIKKESSCETEPQ---VNNVQIEKGDLQNQELKEIDINSMCSS--QNQKTNF--- 210
++E + ES + Q V ++ + E+ + ++ SS QN TN
Sbjct: 167 TQDEAAERTESVLSEDAQDSGTAKVATQEKGMSKMEIFPLQADTQTSSGVQNVATNVKDK 226
Query: 211 -TNPEENLL----------------------KFRVTCNRVG-KHTVTSMESERAFGGKLN 246
++P NL KFRVTCNR G KH+ TSM++ R FGG +N
Sbjct: 227 ASSPCTNLSTDDQDGTDTVPAAVENHGPLKPKFRVTCNRGGAKHSFTSMDAARHFGGGIN 286
Query: 247 DTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRL 306
D W VDL +DI++ L I ++ V + +T+ SLHRRNI F TTL+ TI +M+R+
Sbjct: 287 DDLGWPVDLTKFDIEVVLNIYGDQVTVMIALTKGSLHRRNIQHFGPTTLRSTIVNSMLRI 346
Query: 307 ASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNREL 366
A+ G+V DPMCG G I +EC + GD +E +T+AN+ +N +
Sbjct: 347 ANVQAGEVICDPMCGSGAISIEC-------LHLSGDNHECACPRTRANI----ATINNQR 395
Query: 367 KVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA 426
+ S + GSK N+ LYR + ++ ++ R GRA
Sbjct: 396 RRS--------------------------GQHGSKQGNWELYRRTVRDMARVCRYATGRA 429
Query: 427 ILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
+LLT D+K L + L +LW + + I M G+ + ++ L RT + F
Sbjct: 430 VLLTEDKKCLNKVLTEYDSLWSKKLVLFIKMGGLDAAIYQLKRTNNPF 477
>gi|344250077|gb|EGW06181.1| THUMP domain-containing protein 3 [Cricetulus griseus]
Length = 241
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 134/227 (59%), Gaps = 7/227 (3%)
Query: 255 LDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDV 314
+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY M+RL P P DV
Sbjct: 1 MTNFDVEVLLNIHDNEVIVGIALTEESLHRRNITHFGPTTLRSTLAYGMLRLCEPEPTDV 60
Query: 315 FLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH-------NSGNLNRELK 367
+DPMCG G IP+E + + H + + GD N V + N+L G + L
Sbjct: 61 IVDPMCGTGAIPIEGATEWSHCYHIAGDNNPLAVNRAANNILSLLTKSQIKDGKTSWGLP 120
Query: 368 VSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAI 427
+ + ++ L + A VD IVTD+PFGKR+GSK N+ LY L E+G++ RP GRA+
Sbjct: 121 IDAVQWDICNLPLRTASVDIIVTDMPFGKRMGSKKRNWNLYPASLREMGRVCRPGTGRAV 180
Query: 428 LLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
LLT D+K +AL +W+ + +N+ G+ + V++L RT+ F
Sbjct: 181 LLTQDKKCFTKALSGMGHVWRKVHTVWVNIGGLHAAVYLLKRTSQAF 227
>gi|221104369|ref|XP_002158272.1| PREDICTED: THUMP domain-containing protein 3-like [Hydra
magnipapillata]
Length = 405
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 148/257 (57%), Gaps = 2/257 (0%)
Query: 218 LKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPV 277
L FRVT +R GKH+ SM+S +FG LN+ W VDL D+DI+I L I ++ +G+ +
Sbjct: 148 LSFRVTASRTGKHSFRSMDSAASFGAGLNNYLKWKVDLKDFDIEILLHILDSDLSIGIQL 207
Query: 278 TQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTF 337
T+ S RNI F TTL Y ++ L + PGD+ DPMCGG +I +E S S P+ F
Sbjct: 208 TKDSQSFRNITHFGPTTLSAGFCYCLLHLINIKPGDIICDPMCGGASISIEASCSMPYVF 267
Query: 338 FVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397
+ GD +E + ++ N+ + + L +S + +V +L + + VD V DLPFGK+
Sbjct: 268 NLAGDNHEIAICHSRENIFNLENLRSVSLPISLVHWDVCRLPLRTSSVDHFVVDLPFGKK 327
Query: 398 VGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINM 457
VGSK+ NF+LY L E ++ P G A+ LT ++ + + + S W + ++NM
Sbjct: 328 VGSKTENFVLYPAALNETARVCVPN-GTAVFLTYHKQAMWKTIQNIS-WWTFSRTHQVNM 385
Query: 458 SGMKSFVFILNRTADLF 474
G+ +VFIL RT ++
Sbjct: 386 GGLNVYVFILRRTKCIY 402
>gi|355724183|gb|AES08139.1| THUMP domain containing 3 [Mustela putorius furo]
Length = 337
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/323 (32%), Positives = 173/323 (53%), Gaps = 25/323 (7%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE +E +EK G + K G+++F+I ++ + +V LR
Sbjct: 35 SESEHLQVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDISVESLAQVHCLRS 94
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ LKD + K + W +++W
Sbjct: 95 VDNLFVVVKEFKDYQF--KETKEEV------------LKDFEELAGK---LPWSDPLKVW 137
Query: 130 KQITNYNGVLYPS--IEQFNKYNDI--LRHKKSIRNEINIKKESSCETEPQVNNVQIEKG 185
K T++ I Q + I + K++ E K+ + + + +
Sbjct: 138 KINTSFKKKRTKRKKINQNSGREKIDNGQGDKTVEKE---DKKGFTKNTLDSHILDYYEN 194
Query: 186 DLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFGGK 244
+E+ + + + SS+++K +LKFRVTCNR G KH +S E+ R FGG
Sbjct: 195 PAIKEEISTLVGDDLASSKDEKDEKEETHPKVLKFRVTCNRAGEKHCFSSNEAARDFGGA 254
Query: 245 LNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMV 304
+ D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY M+
Sbjct: 255 VQDYFKWKADMTNFDVEVLLNIHDNEIVVGIALTEESLHRRNITHFGPTTLRSTLAYGML 314
Query: 305 RLASPIPGDVFLDPMCGGGTIPV 327
RL +P P D+ +DPMCG G IP+
Sbjct: 315 RLCAPQPTDIIVDPMCGTGAIPI 337
>gi|341897439|gb|EGT53374.1| hypothetical protein CAEBREN_03166 [Caenorhabditis brenneri]
Length = 391
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 130/450 (28%), Positives = 217/450 (48%), Gaps = 88/450 (19%)
Query: 19 IEATVVTGFEDVVVEECQEKFGKDLLLMKSI----GRVFFNIDLKDIEKVKELRGIDNIL 74
I A V TGFE V +E EK L +K+ G V F++DL++++ ELR +DN+
Sbjct: 7 IYAAVGTGFEKVAAKEISEK-----LPVKNCHSGRGNVKFSLDLQNVKSTLELRSVDNLY 61
Query: 75 FIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITN 134
+ +EN + +G E +K K + IQN++ +WK + + Q+T
Sbjct: 62 VVF--YEN---AIEGLTE-----------MEKEKALEVIQNQISFCNWKLAIGAY-QLTR 104
Query: 135 YNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQELKE 194
EIN + E E Q N
Sbjct: 105 -------------------------GEEINGESERVVEQMRQFMN--------------- 124
Query: 195 IDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGK---HTVTSMESERAFGGKLNDTYFW 251
+ N++ E KFRVTC R G+ H +SM++ FG +N+ + W
Sbjct: 125 ------------EGNYSEATEGSPKFRVTCKRCGEKEIHKFSSMDAASKFGAVINNCFGW 172
Query: 252 LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIP 311
+ D+DI++ L+I + V + + + SL +RNI + TT++ TI + M++LA+ P
Sbjct: 173 KCSVKDFDIEVVLRIEKDFMTVMMALNKESLFKRNICSYGPTTMRSTICHCMLQLANIKP 232
Query: 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN--VLHNSGNLNRELKVS 369
G++ +D MCGGG+IP+E +L + ++ F+ GD +E + + + N L +S N +
Sbjct: 233 GEIVVDAMCGGGSIPIEGALCWKNSVFLGGDNHEMAMERCKQNWTTLSSSTVSNCDF--- 289
Query: 370 PLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429
+ L F + VD IVTDLPFGK++GSK++N LLY + L E +++R GR +++
Sbjct: 290 -FTWDATSLPFCDSSVDSIVTDLPFGKKIGSKTDNRLLYPMLLGEWKRVIRKG-GRLVVM 347
Query: 430 TSDRKHLIQALHITSALWKCRKQIKINMSG 459
T D++ L ++ + W + +NM G
Sbjct: 348 THDKRSLESSILKDRSSWHTKASHVVNMGG 377
>gi|308455663|ref|XP_003090348.1| hypothetical protein CRE_18297 [Caenorhabditis remanei]
gi|308264491|gb|EFP08444.1| hypothetical protein CRE_18297 [Caenorhabditis remanei]
Length = 391
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 123/448 (27%), Positives = 207/448 (46%), Gaps = 78/448 (17%)
Query: 17 ITIE--ATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNIL 74
+T+E A VVTGFE V +E EK + + G F++DLK + +LR +DN+
Sbjct: 3 VTVELCAAVVTGFEKVAAKEIAEKL-PVISCEWNRGNARFSLDLKKVPDTLKLRSVDNLY 61
Query: 75 FIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITN 134
+ G + EE + TIQ ++ +WK ++ ++
Sbjct: 62 VVFYENSIEGLTKMNREEA----------------LKTIQKQISFCNWKLAIDAYQ---- 101
Query: 135 YNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQELKE 194
+ R K EIN E E Q ++ E
Sbjct: 102 -----------------LARDK-----EINGGSERIVE---------------QMRQFIE 124
Query: 195 IDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGK---HTVTSMESERAFGGKLNDTYFW 251
+N + Q+ K FRVTC R G+ H +SM++ FG ++N+ + W
Sbjct: 125 QKVNCQVTGQSPK------------FRVTCRRCGEKEIHKFSSMDAASKFGAEINNAFGW 172
Query: 252 LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIP 311
+ +DI++ L+I + V + + + SL +RNI + TT++ TI Y M+ LA P
Sbjct: 173 KCSVKQFDIEVVLRIEKDNITVMMALNEESLFKRNICSYGPTTMRSTICYCMLHLADIKP 232
Query: 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371
GD+ +D MCGGG+IP+E + ++ H F+ GD +E + + + N NS +
Sbjct: 233 GDIVIDSMCGGGSIPIEGANAWKHAHFLGGDNHEMAMERCKQNWSANSCSARSNCDF--F 290
Query: 372 VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431
+ +L + VD +VTDLPFGK++GS+ +N LLY + L E +++R GR ++++
Sbjct: 291 TWDATKLPLRDNSVDALVTDLPFGKKIGSRMDNRLLYPMLLEEWKRVIRKG-GRLVVMSH 349
Query: 432 DRKHLIQALHITSALWKCRKQIKINMSG 459
D++ L +L + W + +NM G
Sbjct: 350 DKRSLENSLLKDRSSWHIKASHTVNMGG 377
>gi|308491182|ref|XP_003107782.1| hypothetical protein CRE_12810 [Caenorhabditis remanei]
gi|308249729|gb|EFO93681.1| hypothetical protein CRE_12810 [Caenorhabditis remanei]
Length = 391
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 123/448 (27%), Positives = 207/448 (46%), Gaps = 78/448 (17%)
Query: 17 ITIE--ATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNIL 74
+T+E A VVTGFE V +E EK + + G F++DLK + +LR +DN+
Sbjct: 3 VTVELCAAVVTGFEKVAAKEIAEKL-PVISCEWNRGNARFSLDLKKVPDTLKLRSVDNLY 61
Query: 75 FIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITN 134
+ G + EE + TIQ ++ +WK ++ ++
Sbjct: 62 VVFYENSIEGLTKMNREEA----------------LKTIQKQISFCNWKLAIDAYQ---- 101
Query: 135 YNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQELKE 194
+ R K EIN E E Q ++ E
Sbjct: 102 -----------------LARDK-----EINGGSERIVE---------------QMRQFIE 124
Query: 195 IDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGK---HTVTSMESERAFGGKLNDTYFW 251
+N + Q+ K FRVTC R G+ H +SM++ FG ++N+ + W
Sbjct: 125 QKVNCQVTEQSPK------------FRVTCRRCGEKEIHKFSSMDAASKFGAEINNAFGW 172
Query: 252 LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIP 311
+ +DI++ L+I + V + + + SL +RNI + TT++ TI Y M+ LA P
Sbjct: 173 KCSVKQFDIEVVLRIEKDNITVMMALNEESLFKRNICSYGPTTMRSTICYCMLHLADIKP 232
Query: 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371
GD+ +D MCGGG+IP+E + ++ H F+ GD +E + + + N NS +
Sbjct: 233 GDIVIDSMCGGGSIPIEGANAWKHAHFLGGDNHEMAMERCKQNWSANSCSARSNCDF--F 290
Query: 372 VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431
+ +L + VD +VTDLPFGK++GS+ +N LLY + L E +++R GR ++++
Sbjct: 291 TWDATKLPLRDNSVDALVTDLPFGKKIGSRMDNRLLYPMLLEEWKRVIRKG-GRLVVMSH 349
Query: 432 DRKHLIQALHITSALWKCRKQIKINMSG 459
D++ L +L + W + +NM G
Sbjct: 350 DKRSLENSLLKDRSSWHIKASHTVNMGG 377
>gi|32566195|ref|NP_502174.2| Protein M04B2.2 [Caenorhabditis elegans]
gi|26985829|emb|CAB01236.2| Protein M04B2.2 [Caenorhabditis elegans]
Length = 391
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 127/461 (27%), Positives = 219/461 (47%), Gaps = 77/461 (16%)
Query: 16 QITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILF 75
+ I A V+TGFE V +E + F G V F+IDL+ + + +LR IDN+
Sbjct: 4 SVEICAAVITGFEKVAAKEISKLFSPKKC-HPGRGNVRFSIDLERVNETLQLRSIDNLYM 62
Query: 76 IIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNY 135
+ F + E+ S + E D LK TIQ+++ +WK +E + Q+
Sbjct: 63 V--------FYEETIEKLSEMQKE-----DALK---TIQSQISFCNWKLAIEAY-QLARG 105
Query: 136 NGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQELKEI 195
N + N EK Q Q+ K+
Sbjct: 106 NAI----------------------------------------NGGSEKILKQIQQFKKD 125
Query: 196 DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGK---HTVTSMESERAFGGKLNDTYFWL 252
I ++ ++ KFRVTC R G+ H +SM++ FG ++N+ + W
Sbjct: 126 RI------------YSEVTDDSPKFRVTCKRCGEKEIHKFSSMDAASKFGAEINNAFGWK 173
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPG 312
+ ++DI++ L+I N V + + + SL +RNI + TT++ T+ + M++LA PG
Sbjct: 174 CSVKEFDIEVVLRIDRNNMTVMMALNEESLFKRNICAYGPTTMRSTMCHCMLQLADIKPG 233
Query: 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372
D+ +D MCGGG+IP+E ++S+ ++ F+ GD +E + + N NS + L
Sbjct: 234 DIIVDAMCGGGSIPIEGAISWKNSLFLGGDNHEMAMSRCLQNWSANSSSSRSNCDF--LT 291
Query: 373 CNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432
+ L + +D +VTDLPFGK++GS ++N LLY L E +++R GR +L+T D
Sbjct: 292 WDATNLPLRDNSIDALVTDLPFGKKIGSTTDNRLLYPRLLAEWKRVLRKG-GRLVLMTHD 350
Query: 433 RKHLIQALHITSALWKCRKQIKINMSGMKSF-VFILNRTAD 472
++ L + + W+ +N+ G+ + ++NR +D
Sbjct: 351 KRSLENSFLKDRSSWQTDASHVVNVGGLSCLCICMINRKSD 391
>gi|341881718|gb|EGT37653.1| hypothetical protein CAEBREN_11480 [Caenorhabditis brenneri]
Length = 391
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 169/306 (55%), Gaps = 17/306 (5%)
Query: 159 IRNEINIKKESSCETEPQVNNVQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLL 218
I+N+I S C + ++ Q+ +G+ N + + + M N+ ++ E
Sbjct: 84 IQNQI-----SFCNWKLAIDAYQLTRGEEMNGGSERV-VEQMRQFMNEG-KYSEATEGSP 136
Query: 219 KFRVTCNRVGK---HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGL 275
KFRVTC R G+ H +SM++ FG +N+ + W + D+DI++ L+I + V +
Sbjct: 137 KFRVTCKRCGEKEIHKFSSMDAASKFGAVINNCFGWKCSVKDFDIEVVLRIEKDYMTVMM 196
Query: 276 PVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH 335
+ + SL +RNI + TT++ TI + M++LA+ PG++ +D MCGGG+IP+E +L + +
Sbjct: 197 ALNKESLFKRNICSYGPTTMRSTICHCMLQLANIKPGEIVVDAMCGGGSIPIEGALCWKN 256
Query: 336 TFFVCGDINEKLVLKTQAN--VLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLP 393
+ F+ GD +E + + + N L +S N + + L F + VD IVTDLP
Sbjct: 257 SVFLGGDNHEMAMERCKQNWTTLSSSTVSNCDF----FTWDATSLPFCDSSVDSIVTDLP 312
Query: 394 FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQI 453
FGK++G K++N LLY + L E +++R GR +++T D++ L ++ + W +
Sbjct: 313 FGKKIGCKTDNRLLYPILLGEWKRVIRKG-GRLVVMTHDKRSLESSILKDRSSWHTKASH 371
Query: 454 KINMSG 459
+NM G
Sbjct: 372 VVNMGG 377
>gi|395862770|ref|XP_003803603.1| PREDICTED: THUMP domain-containing protein 3-like [Otolemur
garnettii]
Length = 236
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 129/235 (54%), Gaps = 7/235 (2%)
Query: 255 LDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDV 314
+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY M+RL P+P D+
Sbjct: 1 MTNFDVEVLLNIHGNEIIVGIALTEESLHRRNITHFGPTTLRSTLAYGMLRLCDPLPYDI 60
Query: 315 FLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVL-------HNSGNLNRELK 367
+DPMCG G IP+E + + + + GD N V + N+ + G + L
Sbjct: 61 IVDPMCGTGAIPIEGATEWSDCYHIAGDNNPLAVNRAANNISSLLTKSQNKEGKPSWGLP 120
Query: 368 VSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAI 427
+ + ++ L + VD IVTDLPFGKR+GSK N+ LY L E+ ++ P GRA+
Sbjct: 121 IDAVQWDICNLPLRTGSVDIIVTDLPFGKRMGSKKRNWNLYPACLREMSRVCTPATGRAV 180
Query: 428 LLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLFDYAIHGLK 482
LLT D K +AL +W+ + +N+ G+++ V+ N + H L
Sbjct: 181 LLTQDTKCFTKALSGMRHVWRKVDTVWVNIGGLRAAVYFGNLVPGTQPVSFHPLA 235
>gi|351697966|gb|EHB00885.1| THUMP domain-containing protein 3 [Heterocephalus glaber]
Length = 333
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 176/321 (54%), Gaps = 32/321 (9%)
Query: 11 QSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGI 70
+S+ IT ATV TGFE E +EK G + K G+++F+I ++ + +V LR +
Sbjct: 34 ESEHLHITTGATVPTGFERTAAGEIREKLGSSCKISKDQGKIYFDISVESLAQVHCLRSV 93
Query: 71 DNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWK 130
DN+ ++ F++F F K TEE++ LKD + K + W +++WK
Sbjct: 94 DNLFVVVEEFKDFQF--KKTEEEA------------LKDFEELVGK---LPWTDPLKVWK 136
Query: 131 QITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQ 190
+ ++ ++ ++ R ++++ +++ T+ +++ ++ D +N
Sbjct: 137 -VNTCFKKKKTKCKKMSQNSNKERTDNGQGDKLD-ERDIRGFTDNALDSHILD--DYENP 192
Query: 191 ELKEIDINSMC----SSQNQKTNFTNPEEN---LLKFRVTCNRVG-KHTVTSMESERAFG 242
+KE +I+++ +S +T+ + EE +LKFRVTCNR G KH TS E+ R FG
Sbjct: 193 AIKE-EISTLVGDDLASSKDETDEHSKEETEPQVLKFRVTCNRAGEKHCFTSNEAARVFG 251
Query: 243 GKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYN 302
G ++ + W D+ ++D+++ L I NE VG+ +T+ S H RNI F TTL+ T+AY
Sbjct: 252 GAVH--FKWKADMTNFDVEVLLTIHDNEMVVGITLTEESFHHRNITHFGPTTLRSTLAYG 309
Query: 303 MVRLASPIPGDVFLDPMCGGG 323
M+RL +P P D+ +DPMCG G
Sbjct: 310 MLRLCAPQPTDIIVDPMCGTG 330
>gi|332026182|gb|EGI66324.1| THUMP domain-containing protein 3 [Acromyrmex echinatior]
Length = 238
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 123/214 (57%), Gaps = 27/214 (12%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCG 321
I + + ++ L VT S H RNIV F TTL+ TI YN+++LA+P GD+ +DPMCG
Sbjct: 23 IGVTVDTDQLITHLRVTHKSKHHRNIVNFGPTTLRSTICYNLLKLANPKLGDIIVDPMCG 82
Query: 322 GGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381
GG+IP+E +L++PH++ +CGD + + + +T++N + S + C +
Sbjct: 83 GGSIPIEATLAFPHSYVLCGDNDSRAIDRTKSN-----------MDASAITCKI------ 125
Query: 382 PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441
DLPFGKR G+K N + Y+ FL+E G+IV+ GR +LLT DR + AL
Sbjct: 126 ---------DLPFGKRSGNKFYNKIFYKKFLLEFGRIVKLN-GRIVLLTYDRNNFKDALM 175
Query: 442 ITSALWKCRKQIKINMSGMKSFVFILNRTADLFD 475
L+ K I +N+ G+ + V++LNRT D
Sbjct: 176 AAGDLFWVIKIIGVNVGGLPAAVYVLNRTQVALD 209
>gi|12856388|dbj|BAB30650.1| unnamed protein product [Mus musculus]
Length = 315
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 148/306 (48%), Gaps = 33/306 (10%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE E +EK + K G+++F+I ++ + +V LR
Sbjct: 33 SESEHLQVTIGATVPTGFEQTAAGEVREKLKSACRISKDRGKIYFDIAVESLAQVHCLRS 92
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F D ++ L+D + K + W +++W
Sbjct: 93 VDNLFVVVQEFKDYQFK--------------DTKEEVLRDFEELAGK---LPWSDPLKVW 135
Query: 130 KQITNYNGVLYPSI---EQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGD 186
+ T + + K + KK +S ++ + +
Sbjct: 136 QINTTFKKKKAKRRKANQSAGKEKADCGQGDKADEKDGKKKHASSTSDSHILDY------ 189
Query: 187 LQNQELKEI------DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESER 239
+N +KE D+ S C + ++ E + KFRVTCNR G KH TS E+ R
Sbjct: 190 YENPAIKEEISTLVGDVLSSCKDETGQSLREETEPQVQKFRVTCNRAGEKHCFTSNEAAR 249
Query: 240 AFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTI 299
FGG + + + W D++++D+++ L I NE V + +T+ SLHRRNI F TTL+ T+
Sbjct: 250 DFGGAIQEYFKWKADMNNFDVEVLLNIHDNEVIVAIALTEESLHRRNITHFGPTTLRSTL 309
Query: 300 AYNMVR 305
AY M+R
Sbjct: 310 AYGMLR 315
>gi|149036889|gb|EDL91507.1| similar to THUMP domain containing 3 (predicted), isoform CRA_b
[Rattus norvegicus]
Length = 314
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 153/310 (49%), Gaps = 41/310 (13%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE +E +EK + K G+++F+I ++ + +V LR
Sbjct: 32 SESEHLQVTIGATVPTGFEQTAADEVREKLKSSCRISKDRGKIYFDIAVESLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ L+D + K + W +++W
Sbjct: 92 VDNLFVVVEEFKDYQF--KATKEEV------------LRDFEELAGK---LPWSDPLKVW 134
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINI------KKESSCETEPQVNNVQIE 183
+ T + + R K N KK +S +P + +
Sbjct: 135 QINTTFKKKKAKRRKANQSAG---REKADCGQGDNAGEKDGKKKLASGAADPHILDY--- 188
Query: 184 KGDLQNQELKEIDINSMCSS-------QNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSM 235
+N +KE +I+++ +N ++ E + KFRVTCNR G KH TS
Sbjct: 189 ---YENPAIKE-EISTLIGEVLASGEDENGQSLREEAEPQVQKFRVTCNRAGEKHCFTSN 244
Query: 236 ESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTL 295
E+ R FGG + + + W D+ ++D+++ L I NE V + +T+ SLHRRNI F TTL
Sbjct: 245 EAARGFGGAVQEYFKWKADMTNFDVEVLLNIHNNEVIVAIALTEESLHRRNITHFGPTTL 304
Query: 296 KPTIAYNMVR 305
+ T+AY M+R
Sbjct: 305 RSTLAYGMLR 314
>gi|268536494|ref|XP_002633382.1| Hypothetical protein CBG06137 [Caenorhabditis briggsae]
Length = 312
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 169/384 (44%), Gaps = 79/384 (20%)
Query: 15 KQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNIL 74
K + A V+TGFE V E EK + G V F +DL + + +LR IDN+
Sbjct: 3 KSAHLYAAVITGFEKVASREISEKLPATECI-SGRGNVRFCLDLNSVPDILKLRSIDNLY 61
Query: 75 FIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQI-- 132
+ E G ++ EE + TIQ ++ +WK +++++ +
Sbjct: 62 VVFYENELVGLTDMEKEEA----------------LRTIQEQISYCNWKLAIDVYQLVRE 105
Query: 133 TNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQEL 192
TN G ++Q ++ +++ CE
Sbjct: 106 TNIYGGSDRVVDQMREF---------------MREGKRCEVT------------------ 132
Query: 193 KEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGK---HTVTSMESERAFGGKLNDTY 249
EN KFRVTC R G+ H +SM++ FG ++N+
Sbjct: 133 ----------------------ENSPKFRVTCKRCGEKEIHAFSSMDAASKFGAEINNAL 170
Query: 250 FWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASP 309
W + ++DI++ L+I + V + + SL +RNI + TT++ T+ Y M+ LA+
Sbjct: 171 GWKCSVKEFDIEVMLRIEKDNMTVMMALNDESLFKRNICAYGPTTMRSTVCYCMLHLANI 230
Query: 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369
PGDV +D MCGGG+IP+E +L++ + FF+ GD N KL ++ ++ + + +
Sbjct: 231 KPGDVVMDSMCGGGSIPIEGALAWENAFFLGGD-NHKLAMERCKKNWSSNSSSTKSI-CE 288
Query: 370 PLVCNVRQLCFKPACVDGIVTDLP 393
+ L + C+D +VTDLP
Sbjct: 289 FFNWDATNLPLRDNCIDALVTDLP 312
>gi|326435156|gb|EGD80726.1| hypothetical protein PTSG_01316 [Salpingoeca sp. ATCC 50818]
Length = 472
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 128/254 (50%), Gaps = 16/254 (6%)
Query: 204 QNQKTNFTNPEENLLKFRVTCNRVGKHT--VTSMESERAFGGKLNDTYFWLVDLDDYDID 261
+N N +N E FRV+C R+G + + S + G + + W VDL YD++
Sbjct: 99 RNATQNTSNSFEP--SFRVSCKRIGGRSKHLRSTDIAAHVGISMRNKLGWRVDLKSYDME 156
Query: 262 INLQIRYNEAYVGLPVTQTSL-HRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
+ +++ +VG+ +++ L R++IV + L+ + AY + +A P PGDV LDPMC
Sbjct: 157 VYVRVEDTFVFVGISLSEQRLTDRKDIV---VEGLRGSAAYALAMMAEPRPGDVILDPMC 213
Query: 321 GGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380
G G + E P V D++ + N + + L + R L
Sbjct: 214 GKGALLFEAHRLCPAALLVGTDMSNAQLRAAAQNAIGTRSSHQAAL----FKGDARMLPL 269
Query: 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK--HLIQ 438
+ A +D IV DLPFGK+ GS +N LY L E +++RP GRA+LLTS ++ L+
Sbjct: 270 ESASIDRIVCDLPFGKKFGSAKDNRDLYPAVLRECTRVLRPS-GRAVLLTSKKQLTTLLT 328
Query: 439 ALHITSALWKCRKQ 452
A+H L CR+Q
Sbjct: 329 AVH-GQELHICRQQ 341
>gi|339238659|ref|XP_003380884.1| histone H2AV [Trichinella spiralis]
gi|316976155|gb|EFV59491.1| histone H2AV [Trichinella spiralis]
Length = 446
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 110/198 (55%), Gaps = 5/198 (2%)
Query: 207 KTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQ 265
+ +F N E + KFRV+C R G +H TSME+ +FGG + + W VDL ++DI++ ++
Sbjct: 68 EASFKN-ESFVPKFRVSCQRSGGEHPFTSMEAASSFGGVVQAKFQWTVDLVNFDIEVIVR 126
Query: 266 IRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTI 325
I ++ V L +T+ L RN++ F TT+K TI Y ++ L ++ DPMCG G I
Sbjct: 127 ISGSQVRVSLALTKKCLALRNLICFGSTTMKATICYGILYLCEIQNYEIICDPMCGTGAI 186
Query: 326 PVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELK--VSPLVCNVRQLCFKPA 383
+E + +P + GD N + + + + NV N L +S N +L A
Sbjct: 187 ILEAAHCWPKCILLAGDSNCRALKRCETNV-KNFFTLQHSTSAIISIQRWNATKLPLTTA 245
Query: 384 CVDGIVTDLPFGKRVGSK 401
+D IVTDLP+G+R GS+
Sbjct: 246 SIDCIVTDLPYGRRSGSQ 263
>gi|298711479|emb|CBJ26567.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 549
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 127/252 (50%), Gaps = 17/252 (6%)
Query: 218 LKFRVTCNRVGKHTVTSMESERAFGGKL-NDTYFWLVDLDDYDIDINLQIRYNEAYVGLP 276
LKFR + R G+H +S+E+ GG + + W VDL YD+++ I VGL
Sbjct: 127 LKFRASVVRDGQHPFSSVEASPRLGGAVWSVNRGWTVDLKGYDVEVVAFILERGVAVGLA 186
Query: 277 V----TQTSLHRR------NIVEFN--ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGT 324
+ T+ H R +E +++L+P+ AY M+R+A P+ GDV +D MCG GT
Sbjct: 187 LDGDRTKRCSHGRVPKEDKGFIETGKRMSSLRPSTAYLMLRMAEPVVGDVIVDCMCGVGT 246
Query: 325 IPVECSLSYPHTFFVCGDINEKLV--LKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP 382
IP + +P V G+I++ + L+ A L S + + L +
Sbjct: 247 IPFLGAGWFPGVCLVGGEIDDSAIDHLRRNAQSLRRSPAGRAGAAGGACAWDAQSLPLRD 306
Query: 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHI 442
VD +V D+PFG+ G+ N LY L + E+ +++RP GRA+LL + + HL+ +
Sbjct: 307 GSVDAMVVDMPFGQSCGTPRQNARLYPLVMAEMARVLRPS-GRAVLLVT-QPHLLGVPGL 364
Query: 443 TSALWKCRKQIK 454
K RK+++
Sbjct: 365 RRDNQKDRKKLR 376
>gi|384490705|gb|EIE81927.1| hypothetical protein RO3G_06632 [Rhizopus delemar RA 99-880]
Length = 384
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 141/282 (50%), Gaps = 37/282 (13%)
Query: 214 EENLLKFRVTCNRVG-KHTVTSMESERAFGGKLNDTY-FWLVDLDDYDIDINLQIRYNEA 271
E++ FR T + KH V S E G D Y W V + ++D +I + + ++ +
Sbjct: 112 EDSSKTFRATFKKGSIKHQVPSQEIAGYIGAAFGDRYSHWKVKMTEFDYEI-MSVWFHSS 170
Query: 272 -----------------YVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDV 314
VGL + RN V F T+L P+IAY + LA P PG +
Sbjct: 171 DDTLLNRLSAKESSIILLVGLNIPIKDQKHRNRVFFGPTSLNPSIAYCLTMLADPQPGQI 230
Query: 315 FLDPMCGGGTIPVECSLSYPHTFFVCGDINEK-LVLKTQANVLHNSGNLNRELKVSPLVC 373
D CG GTIP+E + YP+TF++ G+I K L K + N+ H + + N EL L+
Sbjct: 231 IFDICCGTGTIPIEGASKYPNTFWLGGEIKSKTLTEKARGNLSHTNLD-NAEL----LLS 285
Query: 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433
+ R+LCF+ VD I++D P+G R S LY F+ ++ +I++ + G+A ++T +
Sbjct: 286 DSRKLCFRDGIVDTIISDWPWGLRENSFQQIQGLYPKFIKQMYRILKNE-GKAYIVTQGQ 344
Query: 434 KHLIQALHITSALWKCRKQ------IKINMSGMKSFVFILNR 469
K + L W C+KQ I I + G + +++IL++
Sbjct: 345 KLMNTVLRYD---W-CKKQWLVNDIIPIGIGGYEVYLYILSK 382
>gi|291000398|ref|XP_002682766.1| UPF0020 domain-containing protein [Naegleria gruberi]
gi|284096394|gb|EFC50022.1| UPF0020 domain-containing protein [Naegleria gruberi]
Length = 487
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 151/306 (49%), Gaps = 35/306 (11%)
Query: 193 KEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYF-- 250
K +D+ ++ + K T+ E LKFR+T R G+H S + FG ++
Sbjct: 190 KWVDMRNILFENSTKDKITSVEA--LKFRITSRRSGQHNFKSSDMLSWFGLLVSHKLMGE 247
Query: 251 --------WLVDLDDYDIDINLQIRYNEA-YVGLPVTQTSL-------HRRNIVEFNITT 294
W DL +YD+DI QI YN+ ++ + + ++ +N + N T+
Sbjct: 248 EISNIGKTWKADLTNYDLDI-FQILYNDTLFLSFTLCEETICLQTFSKQFKNELFLNSTS 306
Query: 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTF-----FVCGDINEKLVL 349
L+P IA+ ++ LA+ GDVF D G G I SL H F + G+++E+++
Sbjct: 307 LRPNIAFGLINLANIKKGDVFCDICSGTGII----SLMALHLFKNNIQIISGELSEEILQ 362
Query: 350 KTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYR 409
N + N N ++ PL + +L K A VD I ++LPFGK++GS S N +Y
Sbjct: 363 NHLINNIDNYRYSNNTIQ--PLKWDFTRLPLKTATVDVICSNLPFGKQIGSHSLNKEIYP 420
Query: 410 LFLIEIGKIVRPQIGRAILLTSDRKHLIQ-ALHITSALWKCRKQIKINMSGMKSFVFILN 468
E+ +++RP+ GR ++LTS+ KHL+Q L +I I+ G FV+IL
Sbjct: 421 PMFSELCRVLRPE-GRIVILTSE-KHLMQKVLQENKVFISFFSRISIHQGGSDVFVYILT 478
Query: 469 RTADLF 474
R + F
Sbjct: 479 RKSKAF 484
>gi|333373569|ref|ZP_08465476.1| methyltransferase domain protein [Desmospora sp. 8437]
gi|332969763|gb|EGK08775.1| methyltransferase domain protein [Desmospora sp. 8437]
Length = 348
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 134/251 (53%), Gaps = 15/251 (5%)
Query: 222 VTCNRVGKHTVTSMESERAFGGKLNDTYFWLV--DLDDYDIDINLQIRYNEAYVGLPVTQ 279
V +R GKHT + E+ A ++ Y V D ++ ++ L + ++A L +T
Sbjct: 109 VNASRKGKHTYSRFEAADAAMRGISKRYPQWVRGDTHNHTLEFRLDLHEDQAVFSLRLTD 168
Query: 280 TSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFF 338
+S R+ F + L+PTIA+ +V + P D+F+DP CG GTI E YP T
Sbjct: 169 SSFRFRSKHRFFSPAALRPTIAHALVWCSLPTDTDIFVDPCCGSGTILKE-RFDYPFTEI 227
Query: 339 VCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRV 398
V GD +E+ + + N L +G+L ++ + RQL D V++LPFG+++
Sbjct: 228 VGGDSSEEAIRSARGN-LREAGHLIQKW-------DARQLPLDSNYADKYVSNLPFGRQI 279
Query: 399 GSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMS 458
G+++ +LYR + E+ ++++P G AILLT D L +A + S CR+ +++++
Sbjct: 280 GNRAELGILYRELVQEMSRVLKPG-GIAILLTEDGSSLSRAANTCSI--HCRELMQVSLK 336
Query: 459 GMKSFVFILNR 469
G+++ + L +
Sbjct: 337 GLRATIHQLRK 347
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 17 ITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFI 76
I ATV+ G E V+ +E + KF + LL S G++FF L + +LR DNI +
Sbjct: 11 IKYMATVLPGLEKVLTDEMKNKFPEVRLLSASRGKIFFESHLPEDSHF-QLRTADNIYRL 69
Query: 77 IATF 80
I +F
Sbjct: 70 IGSF 73
>gi|322796335|gb|EFZ18888.1| hypothetical protein SINV_15185 [Solenopsis invicta]
Length = 215
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 123/244 (50%), Gaps = 42/244 (17%)
Query: 26 GFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIATFENFGF 85
GFE ++EC+EK KD+ ++K GR++FNID KV+++R ID+I FI+A F
Sbjct: 1 GFEWEAIDECREKLNKDVRVVKQRGRIYFNIDWDQFPKVQQMRSIDHI-FIVADNGTLSF 59
Query: 86 SNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEI------DWKKYMEIWKQITNYNGVL 139
+ KDK D+ I++ L I WKK +E WK T++ G L
Sbjct: 60 T-----------------KDKESDLQCIRSYNLNIFSNSDDRWKKTLEAWKCATDFKGKL 102
Query: 140 YPSIEQFNKYNDI-LRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQELKEIDIN 198
YP+IE+++ + L K + N ++E + V+ ++ EKG + Q+
Sbjct: 103 YPTIEEYSAAKEQNLIVKAEMLKLRNKEQEEKDPFDWDVSEMKEEKGKKRGQD------- 155
Query: 199 SMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDY 258
SQ++ E ++LK+RVTC R GKH V S + G L D + WLVDL Y
Sbjct: 156 ---PSQSK-------ESDILKYRVTCERSGKHVVESKDVAGVIGEVLQDKFHWLVDLSTY 205
Query: 259 DIDI 262
++I
Sbjct: 206 HLEI 209
>gi|294508850|ref|YP_003572909.1| hypothetical protein SRM_03036 [Salinibacter ruber M8]
gi|294345179|emb|CBH25957.1| Conserved hypothetical protein containing RNA methylase domain
[Salinibacter ruber M8]
Length = 369
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 127/254 (50%), Gaps = 10/254 (3%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQ 279
FR + R G+H TS++ + GG L+ Y VDL+DYD+++ + +R ++ V + T+
Sbjct: 121 FRASSVRQGEHDFTSVDVQTRAGGALDARYDASVDLEDYDVEVRVDVREDQCLVSVQHTR 180
Query: 280 TSLHRRNIVEFNI-TTLKPTIAYNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTF 337
+L RR + + LK +AY ++RLA P + LDP CG GTI +E + + T
Sbjct: 181 EALSRRQLEGYQPRAALKANVAYALLRLAHLDAPPNTLLDPFCGSGTILLEAADLWADTQ 240
Query: 338 FVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKPACVDGIVTDLPFG 395
D NE+ V + NV + L+ + + +V L F D IVT+ PFG
Sbjct: 241 CYGSDWNEEAVSGARTNV--DLAGLSDRIAIRK--GDVWHLDETFADVTADLIVTNPPFG 296
Query: 396 KRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKI 455
R+ S + + YR L ++G ++RP G +++ R+ + S + R I
Sbjct: 297 VRMASSMDFYPFYRRVLGQMGAVLRP--GGLVVMLVLRQGPFNTVLDESDRFASRHVRAI 354
Query: 456 NMSGMKSFVFILNR 469
+ G+ +VF+L R
Sbjct: 355 EIGGLYPYVFVLER 368
>gi|395508173|ref|XP_003758388.1| PREDICTED: THUMP domain-containing protein 2, partial [Sarcophilus
harrisii]
Length = 486
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 139/283 (49%), Gaps = 17/283 (6%)
Query: 122 WKKYMEIWKQITNY-----NGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQ 176
W + + IWK + +GV P + + +I+ K I + + +++ C+ E Q
Sbjct: 87 WIRAVSIWKSLLELEEKLPSGVSKPPKRKTEENENIITKKFKIEQTLMMPEDTECQLEKQ 146
Query: 177 VNNVQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGK--HTVTS 234
++ EK DL + E +I S+N + ++ L FRV+C GK T+
Sbjct: 147 KDDSIQEKKDL----ITEKEIFQEEKSKNDEEKEVEHHQDKLTFRVSCRCSGKVGKIFTT 202
Query: 235 MESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT 294
E R G L + W DL + ++I + + + VG+P+ + L R ++ +
Sbjct: 203 EEVGRVIGTTLIKEFGWKADLRNPSLEIFVHLNDTYSVVGIPIFRLPLASRAYIK--VAG 260
Query: 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN 354
L+ TIA+ M LA G V LDPMCG GTI +E + +P+ +++ D+++ +L N
Sbjct: 261 LRSTIAWTMASLAEINIGAVVLDPMCGLGTILLEAAKEWPNAYYLGADVSDSQLLGAYDN 320
Query: 355 VLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397
L ++ ++R + L +V +L VD I++D+PFGK+
Sbjct: 321 -LKSASLMDR---IELLKFSVTELPLLSESVDVIISDVPFGKK 359
>gi|440800147|gb|ELR21190.1| THUMP domain containing 3 isoform 1, putative [Acanthamoeba
castellanii str. Neff]
Length = 440
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 131/273 (47%), Gaps = 23/273 (8%)
Query: 219 KFRVTCNRVGKHTVTSMESERAFGGKLNDTYF-WLVDLDDYDIDINLQI----------- 266
+FR +C R G+ S A G + D + W V L Y++++ + +
Sbjct: 160 QFRCSCRRRGEQMWQSHAVAGAVGAGMVDRFPNWKVSLKTYELEVYVNVIKADMILGVSL 219
Query: 267 -----RYNEAYVGLPVTQTSLHRRN--IVEFNITTLKPTIAYNMVRLASPIPGDVFLDPM 319
N Y G P + R+ + T L PTIA +++ LA PG V LDP
Sbjct: 220 SHRPTDGNSNYAGHPGGRKKRRRQKGFVTLLGKTALSPTIANSLILLADIKPGQVVLDPF 279
Query: 320 CGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANV-LHNSGNLNRELKVSPLVCNVRQL 378
CG GT+P+ + P + D + V KT N+ L+N R V + +VR+L
Sbjct: 280 CGVGTLPIHAAAIEPGAIVIGADRAKSEVNKTVNNLQLYNERVAPRCPWVDIVQWDVRRL 339
Query: 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQ 438
+ + VD +++DLPFG R GS +N +LY L L E+ ++ + Q G+A+L+T+D +
Sbjct: 340 PIRSSFVDVVISDLPFGVRSGSTKSNHVLYPLALKELARVTKLQ-GKALLITADDDLMTN 398
Query: 439 ALHITSALWKCRK--QIKINMSGMKSFVFILNR 469
+ + LW+ + + ++ M+ +++L R
Sbjct: 399 VVAKATHLWRTVQTHSFLMGLNEMRITLYVLER 431
>gi|281341391|gb|EFB16975.1| hypothetical protein PANDA_007303 [Ailuropoda melanoleuca]
Length = 460
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 142/296 (47%), Gaps = 32/296 (10%)
Query: 150 NDILRHKKSIRNEINIKKES-SCETEPQVNNVQIEKGDL-----QNQELKEIDINSMCSS 203
NDI+ KK ++ +ES C+ E Q+ +E+GD ++QE + D+ ++
Sbjct: 98 NDIINPKKLKTKQMQELQESRECQLEKQMEEATVEQGDFLTNREKSQEAFQNDVVKAVAA 157
Query: 204 QNQKTNFTNPEENLLKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDID 261
NQK L FRV+C G T T+ E R G L + W DL + +++
Sbjct: 158 PNQKD---------LTFRVSCRCSGSMAKTFTAQEVGRVIGIALKKQFGWKADLRNPNLE 208
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCG 321
I + + + VG+PV + L R ++ L+ TIA+ M LA G + LDPMCG
Sbjct: 209 IFIHLNDIYSVVGIPVFRVPLASRAYIK--TAGLRSTIAWAMASLAEIKAGALVLDPMCG 266
Query: 322 GGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381
GTI +E + +P ++V D+++ +L N L +G + K+ L +V +L
Sbjct: 267 LGTILLEAAKEWPDVYYVGADVSDSQLLGACDN-LKAAGLQD---KIELLKVSVIELPLP 322
Query: 382 PACVDGIVTDLPFGK--RVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
VD I++D+PFGK ++G N L ++ +G G +LL S+ H
Sbjct: 323 SESVDIIISDIPFGKKFKLGKDIKNILQEMERVLHVG-------GTIVLLLSEDHH 371
>gi|301766729|ref|XP_002918786.1| PREDICTED: THUMP domain-containing protein 2-like, partial
[Ailuropoda melanoleuca]
Length = 477
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 109/399 (27%), Positives = 189/399 (47%), Gaps = 46/399 (11%)
Query: 50 GRVFFNIDLKDIEKVKELRGIDNILFIIA-TFE-NFGFSNKGTEEDSGQKDESDLLKDKL 107
G+VFF D+ +K+L+ + + +I F N +KG + Q+ +D + L
Sbjct: 22 GKVFFTT-CSDLNMLKKLKSAERLFLLIKKQFPLNVSSVSKGKIFNEMQRLVNDDPESWL 80
Query: 108 KDVATIQNKVLEIDWKKYMEIWKQITNYNG-VLYPSIEQFNKYNDILRHKKSIRNEINIK 166
++ +N +LE+D K+ +++ + L +E+ NDI+ KK ++
Sbjct: 81 SAISIWKN-LLELDAKE-----DKLSQRDANPLKRKVEE----NDIINPKKLKTKQMQEL 130
Query: 167 KES-SCETEPQVNNVQIEKGDL-----QNQELKEIDINSMCSSQNQKTNFTNPEENLLKF 220
+ES C+ E Q+ +E+GD ++QE + D+ ++ NQK L F
Sbjct: 131 QESRECQLEKQMEEATVEQGDFLTNREKSQEAFQNDVVKAVAAPNQKD---------LTF 181
Query: 221 RVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVT 278
RV+C G T T+ E R G L + W DL + +++I + + + VG+PV
Sbjct: 182 RVSCRCSGSMAKTFTAQEVGRVIGIALKKQFGWKADLRNPNLEIFIHLNDIYSVVGIPVF 241
Query: 279 QTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFF 338
+ L R ++ L+ TIA+ M LA G + LDPMCG GTI +E + +P ++
Sbjct: 242 RVPLASRAYIK--TAGLRSTIAWAMASLAEIKAGALVLDPMCGLGTILLEAAKEWPDVYY 299
Query: 339 VCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK-- 396
V D+++ +L N L +G + K+ L +V +L VD I++D+PFGK
Sbjct: 300 VGADVSDSQLLGACDN-LKAAGLQD---KIELLKVSVIELPLPSESVDIIISDIPFGKKF 355
Query: 397 RVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
++G N L ++ +G G +LL S+ H
Sbjct: 356 KLGKDIKNILQEMERVLHVG-------GTIVLLLSEDHH 387
>gi|83816335|ref|YP_446911.1| THUMP domain/methyltransferase domain-containing protein
[Salinibacter ruber DSM 13855]
gi|83757729|gb|ABC45842.1| THUMP domain/methyltransferase domain protein [Salinibacter ruber
DSM 13855]
Length = 369
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 126/254 (49%), Gaps = 10/254 (3%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQ 279
FR + R G+H TS++ + GG L+ Y VDL+DYD+++ + +R ++ V + T+
Sbjct: 121 FRASSVRQGEHDFTSVDVQTRAGGALDARYDASVDLEDYDVEVRVDVRDDQCLVSVQHTR 180
Query: 280 TSLHRRNIVEFNI-TTLKPTIAYNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTF 337
+L RR + + LK +AY ++RLA P + LDP CG TI +E + + T
Sbjct: 181 EALSRRQLEGYQPRAALKANVAYALLRLAHLDAPPNTLLDPFCGSSTILLEAADLWADTQ 240
Query: 338 FVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKPACVDGIVTDLPFG 395
D NE+ V + NV + L+ + + +V L F D IVT+ PFG
Sbjct: 241 CYGSDWNEEAVSGARTNV--DLAGLSDRIAIRK--GDVWHLDETFADVTADLIVTNPPFG 296
Query: 396 KRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKI 455
R+ S + + YR L ++G ++RP G +++ R+ + S + R I
Sbjct: 297 VRMASSMDFYPFYRRVLGQMGAVLRP--GGLVVMLVLRQGPFNTVLDESEQFASRHVRAI 354
Query: 456 NMSGMKSFVFILNR 469
+ G+ +VF+L R
Sbjct: 355 EIGGLYPYVFVLER 368
>gi|194220784|ref|XP_001499508.2| PREDICTED: LOW QUALITY PROTEIN: THUMP domain-containing protein
2-like [Equus caballus]
Length = 516
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 117/426 (27%), Positives = 198/426 (46%), Gaps = 48/426 (11%)
Query: 22 TVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIATFE 81
T G E V+ E + + + S G+VFF D+ ++K+L+ + + +I
Sbjct: 21 TAGRGLEPFVMREVRARXATTQVEYIS-GKVFFTT-CPDLNRLKKLKSAERLFLLIKKQF 78
Query: 82 NFGFSN--KGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNGVL 139
F S+ KG + Q+ SD + L ++ +N +LE+D KK ++ ++ N
Sbjct: 79 PFDVSSVSKGRMCNEMQRLISDDPESWLNAISIWKN-LLELDAKKE-KLSQRDAN----- 131
Query: 140 YPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQELKEI---- 195
+++ NDI+ KKS + EI +E C+ E Q+ +E+G++ + +
Sbjct: 132 --PLKRNMGENDIIIAKKS-KTEIQENRE--CQLEKQMEEEILEQGNVITEREEVQEEES 186
Query: 196 --DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFW 251
D+ + NQ L FRV+C G T T+ E R G L + W
Sbjct: 187 EKDVAKAVVAHNQGD---------LTFRVSCRCSGAVAKTFTAQEIGRVIGIALMKQFGW 237
Query: 252 LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIP 311
DL + +++I + + + VG+PV + L R + L+ TIA+ M LA
Sbjct: 238 KADLRNPNLEIFIHLNDVYSVVGIPVFRVPLASRAYI--RTAGLRSTIAWAMASLAEIKA 295
Query: 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371
G LDPMCG GTI +E S +P ++V D+++ +L ++ N L +G E KV L
Sbjct: 296 GAFVLDPMCGLGTILLEASKEWPDVYYVGADVSDSQLLGSRDN-LKAAG---LEDKVELL 351
Query: 372 VCNVRQLCFKPACVDGIVTDLPFGK--RVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429
+V +L F VD I++D+PFGK ++G + L ++ +G G +LL
Sbjct: 352 KVSVVELPFPSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVG-------GTVVLL 404
Query: 430 TSDRKH 435
S+ H
Sbjct: 405 LSEDHH 410
>gi|241846848|ref|XP_002415589.1| conserved hypothetical protein [Ixodes scapularis]
gi|215509801|gb|EEC19254.1| conserved hypothetical protein [Ixodes scapularis]
Length = 160
Score = 107 bits (266), Expect = 2e-20, Method: Composition-based stats.
Identities = 55/128 (42%), Positives = 81/128 (63%), Gaps = 14/128 (10%)
Query: 319 MCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVL----------HNSGNLNRELKV 368
MCGGG+IP+E ++++P T +CGD +E V +T AN++ +GNL +L
Sbjct: 1 MCGGGSIPIEAAINWPDTITLCGDNHELAVQRTSANLVALNDKRTASDEKTGNLPADL-- 58
Query: 369 SPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428
L +V +L + VD VTDLPFGKR+GS+ +N LY L E+G++VRP+ G+A+L
Sbjct: 59 --LRWDVNRLPLRNGSVDIFVTDLPFGKRMGSRPDNRTLYPKLLAELGRVVRPRTGKAVL 116
Query: 429 LTSDRKHL 436
LT D+K L
Sbjct: 117 LTQDKKTL 124
>gi|300794869|ref|NP_001179151.1| THUMP domain-containing protein 2 [Bos taurus]
gi|296482646|tpg|DAA24761.1| TPA: THUMP domain containing 2 [Bos taurus]
Length = 501
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 110/423 (26%), Positives = 201/423 (47%), Gaps = 41/423 (9%)
Query: 22 TVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIATFE 81
T G E ++ E +E+ + S G+VFF D+ +K+L+ + + +I
Sbjct: 21 TAGRGLEPFLMREVRERLAATQVEYIS-GKVFFTT-CSDLNMLKQLKSAERLFLLIKKQL 78
Query: 82 NFGFSN--KGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNGVL 139
F S+ KG + Q+ +D + L ++ +N +LE+D KK +++++ N
Sbjct: 79 PFPVSSVSKGKILNELQRLINDDPESWLNAISIWKN-LLELDAKK-----EKLSHKNA-- 130
Query: 140 YPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDL-----QNQELKE 194
+++ +DI K +++ C+ E Q+ +E+G+ + Q+L++
Sbjct: 131 -NPLKRKVGEDDITAKKLKTEQIQELQETKECQLEKQIEEKILEQGNFITEGEKFQKLQD 189
Query: 195 IDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWL 252
D+ ++NQ TN T FRV+C G T+T+ E R G L + W
Sbjct: 190 -DVTEAVDTRNQ-TNLT--------FRVSCRCSGAVAKTLTAQEVGRVIGIALMKQFGWK 239
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPG 312
DL + +++I + + + +G+PV + L R ++ L+ TIA+ M LA G
Sbjct: 240 ADLRNPNLEIFIHLSDVYSVLGIPVFRVPLACRAYIK--TAGLRSTIAWAMASLAEIKAG 297
Query: 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372
V LDPMCG GTI +E + +PH ++V D+++ + N L +G + K+ L
Sbjct: 298 AVVLDPMCGLGTILLEAAKEWPHVYYVGADVSDSQLSGAYDN-LRAAGLRD---KIELLQ 353
Query: 373 CNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432
+V +L VD I++D+PFGK+ + + L E+ +++R G +LL S+
Sbjct: 354 VSVIELPLPSESVDIIISDIPFGKKFKLGKD----IKRMLQEMERVLRVG-GTIVLLLSE 408
Query: 433 RKH 435
H
Sbjct: 409 DHH 411
>gi|298245011|ref|ZP_06968817.1| putative RNA methylase [Ktedonobacter racemifer DSM 44963]
gi|297552492|gb|EFH86357.1| putative RNA methylase [Ktedonobacter racemifer DSM 44963]
Length = 351
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 124/255 (48%), Gaps = 13/255 (5%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDL--DDYDIDINLQIRYNEAYVGLPV 277
+RV + G H +++ + G L + L DD DI+ + I +E +G+ +
Sbjct: 106 WRVVSQKSGYHEFRRIDAGESVGAALQRNLPRGMRLVKDDADIEFWVWISGSEVLIGVRL 165
Query: 278 TQTSL-HRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPH 335
+ ++ HR E +L+PTIA M L+ P D+ LDP+CG GTI +E L+ P+
Sbjct: 166 SDATMRHRHYKQEHLPASLRPTIAAAMCVLSRPTAQDIVLDPLCGAGTILIERGLAEVPY 225
Query: 336 TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFG 395
+ GD+ E+ V Q N H + LK + R L + V I+T+LPFG
Sbjct: 226 EALLGGDLREEAVTVAQRNARH--ARVEMTLK----TWDARSLPLEEGSVTRIITNLPFG 279
Query: 396 KRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKI 455
K++G+ N LY+ E ++ RP G + LTS+ + AL + W+ K++ +
Sbjct: 280 KQIGTPEKNVKLYKDLAHEFRRVSRPD-GLLVALTSENRVWEAALREQN--WRITKKVVL 336
Query: 456 NMSGMKSFVFILNRT 470
+ G + +F+ R
Sbjct: 337 VVLGQPASIFVAARA 351
>gi|390332189|ref|XP_003723440.1| PREDICTED: THUMP domain-containing protein 3-like
[Strongylocentrotus purpuratus]
Length = 115
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 69/101 (68%)
Query: 255 LDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDV 314
+ DYDI++ + I + V + +T+ SLHRRNI F ITTLK TIAY M+RLA P PG++
Sbjct: 1 MKDYDIEVVVNILEDSTLVSISLTKESLHRRNITHFGITTLKSTIAYCMLRLAQPKPGEI 60
Query: 315 FLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANV 355
+DPMCG G IP+E + + + V GD+N+ V +T+AN+
Sbjct: 61 IMDPMCGVGGIPLEGLIDWKSCYVVSGDMNDVAVERTKANL 101
>gi|440801988|gb|ELR22928.1| methyltransferase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 487
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 123/267 (46%), Gaps = 13/267 (4%)
Query: 183 EKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFG 242
E GD +N E + S F E L V H E R FG
Sbjct: 104 EGGDGRNGEAAKDKSPRTIKSATGANPFKIYEHGGLFVMVGWAVSYAHLWEQAEVARLFG 163
Query: 243 GKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRN-IVEFNITTLKPTIAY 301
++ + W DL +Y+ ++ + + + + LPV + + +R+ + F L+P +A+
Sbjct: 164 AQIKNKLGWYTDLKNYNTEVMIHLNDEQLVIALPVGRVPISKRSYMASFG---LRPPVAW 220
Query: 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDI-NEKLVLKTQANVLHNSG 360
M RL +V DPMCG GT+ +E + +P +V D+ NE+L L L N
Sbjct: 221 AMARLVEIGEEEVVCDPMCGAGTLLIEAAQEWPGACYVGMDVSNEQLGL-----CLDNLQ 275
Query: 361 NLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR--VGSKSNNFLLYRLFLIEIGKI 418
+ +++ V L + VD +V DLPFG++ VG + LYR F E ++
Sbjct: 276 QSRTQSRIAVCRARVEALPLRDESVDAVVCDLPFGRKFQVGDAAALARLYRAFAAEALRV 335
Query: 419 VRPQIGRAILLTSDRKHLIQALHITSA 445
+RP +GRA+LLTS + L +AL A
Sbjct: 336 LRP-LGRAVLLTSQTETLEEALRAVDA 361
>gi|444722382|gb|ELW63079.1| THUMP domain-containing protein 3 [Tupaia chinensis]
Length = 368
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 130/286 (45%), Gaps = 39/286 (13%)
Query: 16 QITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILF 75
Q+TI ATV TGFE +E +EK G + K G+++F++ ++ + +V LR +DN+
Sbjct: 38 QVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDVSVESLAQVHCLRSVDNLFV 97
Query: 76 IIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNY 135
++ F+++ F K T+E+ LKD + K + W +++WK T++
Sbjct: 98 VVQEFKDYQF--KKTKEEV------------LKDFEGLTGK---LPWSDPLKVWKINTSF 140
Query: 136 --NGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESS----------CETEPQVNNVQIE 183
I Q + + +E ++KK+S+ C P + E
Sbjct: 141 KKRKTKRKKINQNSNKGKTENGQGDKLDERDVKKDSTNNALDSHILDCYENPAIKE---E 197
Query: 184 KGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFG 242
L +L + C + + E ++KFRVTCNR G KH TS E+ R FG
Sbjct: 198 VSTLVGDDL------ASCKDETDENTKEETEPQVIKFRVTCNRAGEKHCFTSNEAARDFG 251
Query: 243 GKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIV 288
G + D + W D+ ++D+++ L I NE + L N V
Sbjct: 252 GAVQDHFKWKADMTNFDVEVLLNIHDNEVIRNWNLYPACLQEMNCV 297
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 404 NFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSF 463
N+ LY L E+ + RP GRA+LLT D+K +AL +W+ + +N++G+ +
Sbjct: 283 NWNLYPACLQEMNCVCRPGTGRAVLLTQDKKCFTKALSGMGHVWRKVHTVWVNIAGLHAA 342
Query: 464 VFILNRTADLF 474
V++L RT F
Sbjct: 343 VYLLKRTPQAF 353
>gi|254553441|ref|NP_001156978.1| THUMP domain containing 2 isoform 1 [Rattus norvegicus]
Length = 549
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 140/288 (48%), Gaps = 24/288 (8%)
Query: 122 WKKYMEIWKQITNYN--------GVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCET 173
W K + +W+++ +++ G P +++ ND + KK E+ + +S E+
Sbjct: 105 WLKAISLWRKLLDHDTNGEKVSQGDANP-LKRKAGENDSITPKKLKLEEMQVVDKSHGES 163
Query: 174 EPQVNNVQIEKGD--LQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG--K 229
+ +E+G+ + EL+E ++ + + +PE+ L FR++C G +
Sbjct: 164 QQDQPQGPLEQGETLARTDELQEQRLHR---ASETAAHAQSPED--LTFRISCRCSGSIR 218
Query: 230 HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE 289
VT E+ R G L + W DL D++I + + + VG+P+ + L R ++
Sbjct: 219 KVVTGQEAGRVAGLALMRQFGWKADLRKPDLEIFMHLSDAYSVVGIPLLRVPLASRTYLQ 278
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
L+ TIA+ M +A G + LDPMCG GTI VE + +P F+V D+++ +L
Sbjct: 279 --TAGLRSTIAWAMASIAEIKAGALVLDPMCGLGTILVEAAEEWPDVFYVGADVSDSQLL 336
Query: 350 KTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397
N L +G +R + L +V L VD I++D+PFGK+
Sbjct: 337 GACDN-LKAAGLAHR---IELLKGSVADLPLPAQSVDVIISDIPFGKK 380
>gi|440907660|gb|ELR57780.1| THUMP domain-containing protein 2 [Bos grunniens mutus]
Length = 471
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 104/395 (26%), Positives = 190/395 (48%), Gaps = 40/395 (10%)
Query: 50 GRVFFNIDLKDIEKVKELRGIDNILFIIATFENFGFSN--KGTEEDSGQKDESDLLKDKL 107
G+VFF D+ +K+L+ + + +I F S+ KG + Q+ +D + L
Sbjct: 18 GKVFFTT-CSDLNMLKQLKSAERLFLLIKKQLPFPVSSVSKGKILNELQRLINDDPESWL 76
Query: 108 KDVATIQNKVLEIDWKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKK 167
++ +N +LE+D KK +++++ N +++ +DI K +++
Sbjct: 77 NAISIWKN-LLELDAKK-----EKLSHKNA---NPLKRKVGEDDITAKKLKTEQIQELQE 127
Query: 168 ESSCETEPQVNNVQIEKGDL-----QNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRV 222
C+ E Q+ +E+G+ + Q+L++ D+ ++NQ TN T FRV
Sbjct: 128 TKECQLEKQIEEKILEQGNFITEGEKFQKLQD-DVMEAVDTRNQ-TNIT--------FRV 177
Query: 223 TCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQT 280
+C G T+T+ E R G L + W DL + +++I + + + +G+PV +
Sbjct: 178 SCRCSGAVAKTLTAQEVGRVIGIALMKQFGWKADLRNPNLEIFIHLSDIYSVLGIPVFRV 237
Query: 281 SLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVC 340
L R ++ L+ TIA+ M LA G V LDPMCG GTI +E + +PH ++V
Sbjct: 238 PLACRAYIK--TAGLRSTIAWAMASLAEIKAGAVVLDPMCGLGTILLEAAKEWPHVYYVG 295
Query: 341 GDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGS 400
D+++ + N L +G + K+ L +V +L VD I++D+PFGK+
Sbjct: 296 ADVSDSQLSGAYDN-LRAAGLRD---KIELLQVSVIELPLPSESVDIIISDIPFGKKFKL 351
Query: 401 KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
+ + L E+ +++R G +LL S+ H
Sbjct: 352 GKD----IKRMLQEMERVLRVG-GTIVLLLSEDHH 381
>gi|386359968|ref|YP_006058213.1| N6-adenine-specific DNA methylase [Thermus thermophilus JL-18]
gi|383508995|gb|AFH38427.1| putative N6-adenine-specific DNA methylase [Thermus thermophilus
JL-18]
Length = 335
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 127/275 (46%), Gaps = 13/275 (4%)
Query: 198 NSMCSSQNQKTNFTNPE-ENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD 256
+ + + + PE E FRV R G+H TS E ER G L+ Y VDL
Sbjct: 70 DPLGALERAALALPWPELEGAGSFRVEARREGEHPFTSPEVERRVGEALHRAYGVPVDLK 129
Query: 257 DYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFL 316
+ + + +R EA++G+ +T+ L RR +L P +A ++RLA PG L
Sbjct: 130 RPAVRVRVDVRGEEAFLGVQLTERPLSRRFPKAALRGSLTPVLAQALLRLADARPGMRVL 189
Query: 317 DPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV 375
DP G GTI +E + + P + GD++EK + + L + + R L+ +
Sbjct: 190 DPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLR-----ADA 244
Query: 376 RQLC-FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434
R L F P VD I+ + P G R+G K F LYR FL ++ P GR LLT
Sbjct: 245 RHLPRFFPE-VDRILANPPHGFRLGRKEELFRLYRDFLRGALALL-PPGGRVALLTLRPA 302
Query: 435 HLIQALHITSALWKCRKQIKINMSGMKSFVFILNR 469
L +AL AL R + G+ VF+L +
Sbjct: 303 LLKRALPRGFALRHAR---VVEQGGVYPRVFVLEK 334
>gi|397493567|ref|XP_003817675.1| PREDICTED: THUMP domain-containing protein 2 [Pan paniscus]
Length = 473
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 138/298 (46%), Gaps = 36/298 (12%)
Query: 150 NDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDL-------QNQELKEIDINSMCS 202
N+I+ K I I++ C+ E Q+ +E+ D Q +E + DI
Sbjct: 110 NEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRDFTTKSEKFQEEEFQN-DIEKAMD 168
Query: 203 SQNQKTNFTNPEENLLKFRVTC---NRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYD 259
+ NQ N L FRV+C +GK T+ E + G + + W DL +
Sbjct: 169 THNQ---------NDLTFRVSCRCSGTIGK-AFTAQEVGKVIGIAIMKHFGWKADLRNPQ 218
Query: 260 IDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPM 319
++I + + + VG+PV + SL R ++ L+ TIA+ M LA G LDPM
Sbjct: 219 LEIFIHLNDIYSVVGIPVFRVSLASRAYIK--TAGLRSTIAWAMASLADIKAGAFVLDPM 276
Query: 320 CGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC 379
CG GTI +E + +P ++V D+++ +L T N L +G E K+ L +V +L
Sbjct: 277 CGLGTILLEAAKEWPDVYYVGADVSDSQLLGTWDN-LKAAG---LEDKIELLKISVIELP 332
Query: 380 FKPACVDGIVTDLPFGK--RVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
VD I++D+PFGK ++G + L ++ +G G +LL S+ H
Sbjct: 333 LPSESVDIIISDIPFGKKFKLGKDVKSILQEMERVLHVG-------GTIVLLLSEDHH 383
>gi|55981490|ref|YP_144787.1| hypothetical protein TTHA1521 [Thermus thermophilus HB8]
gi|55772903|dbj|BAD71344.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 306
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 127/275 (46%), Gaps = 13/275 (4%)
Query: 198 NSMCSSQNQKTNFTNPE-ENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD 256
+ + + + PE E FRV R G+H TS E ER G L+ Y VDL
Sbjct: 41 DPLGALERAALALPWPELEEAGSFRVEARREGEHPFTSPEVERRVGEALHRAYGVPVDLK 100
Query: 257 DYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFL 316
+ + + +R EA++G+ +T+ L RR +L P +A ++RLA PG L
Sbjct: 101 RPAVRVRVDVRGEEAFLGVQLTERPLSRRFPKAALRGSLTPVLAQALLRLADARPGMRVL 160
Query: 317 DPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV 375
DP G GTI +E + + P + GD++EK + + L + + R L+ +
Sbjct: 161 DPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLR-----ADA 215
Query: 376 RQLC-FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434
R L F P VD I+ + P G R+G K F LYR FL ++ P GR LLT
Sbjct: 216 RHLPRFFPE-VDRILANPPHGLRLGRKEGLFRLYRDFLRGALALLLPG-GRVALLTLRPA 273
Query: 435 HLIQALHITSALWKCRKQIKINMSGMKSFVFILNR 469
L +AL AL R + G+ VF+L +
Sbjct: 274 LLKRALPPGFALRHAR---VVEQGGVYPRVFVLEK 305
>gi|13278783|gb|AAH04163.1| THUMP domain containing 2 [Homo sapiens]
gi|15342055|gb|AAH13299.1| THUMP domain containing 2 [Homo sapiens]
gi|16565963|gb|AAL26317.1| SAM-dependent methyltransferase [Homo sapiens]
gi|190689393|gb|ACE86471.1| THUMP domain containing 2 protein [synthetic construct]
gi|190690755|gb|ACE87152.1| THUMP domain containing 2 protein [synthetic construct]
Length = 473
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 136/297 (45%), Gaps = 34/297 (11%)
Query: 150 NDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDL-------QNQELKEIDINSMCS 202
N+I+ K I I++ C+ E Q+ +E+ D Q +E + DI
Sbjct: 110 NEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRDFTTKSEKFQEEEFQN-DIEKAID 168
Query: 203 SQNQKTNFTNPEENLLKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDI 260
+ NQ N L FRV+C G T+ E + G + + W DL + +
Sbjct: 169 THNQ---------NDLTFRVSCRCSGTIGKAFTAQEVGKVIGIAIMKHFGWKADLRNPQL 219
Query: 261 DINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
+I + + + VG+PV + SL R ++ L+ TIA+ M LA G LDPMC
Sbjct: 220 EIFIHLNDIYSVVGIPVFRVSLASRAYIK--TAGLRSTIAWAMASLADIKAGAFVLDPMC 277
Query: 321 GGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380
G GTI +E + +P ++V D+++ +L T N L +G E K+ L +V +L
Sbjct: 278 GLGTILLEAAKEWPDVYYVGADVSDSQLLGTWDN-LKAAG---LEDKIELLKISVIELPL 333
Query: 381 KPACVDGIVTDLPFGK--RVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
VD I++D+PFGK ++G + L ++ +G G +LL S+ H
Sbjct: 334 PSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVG-------GTIVLLLSEDHH 383
>gi|297667775|ref|XP_002812142.1| PREDICTED: THUMP domain-containing protein 2 [Pongo abelii]
Length = 504
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 136/297 (45%), Gaps = 34/297 (11%)
Query: 150 NDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDL-------QNQELKEIDINSMCS 202
N+I+ K I I++ C+ E Q+ +E+ D Q +E + DI
Sbjct: 141 NEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRDFTTKSENFQEEEFQN-DIEKAID 199
Query: 203 SQNQKTNFTNPEENLLKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDI 260
+ NQ N L FRV+C G T+ E + G + + W DL + +
Sbjct: 200 THNQ---------NDLTFRVSCRCSGTIGKAFTAQEVGKVIGIAIMKHFGWKADLRNPQL 250
Query: 261 DINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
+I + + + VG+PV + SL R ++ L+ TIA+ M LA G LDPMC
Sbjct: 251 EIFIHLNDVYSVVGIPVFRVSLASRAYIK--TAGLRSTIAWAMASLADIKAGAFVLDPMC 308
Query: 321 GGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380
G GTI +E + +P ++V D+++ +L T N L +G E K+ L +V +L
Sbjct: 309 GLGTILLEAAKEWPDVYYVGADVSDSQLLGTWDN-LKAAG---LEDKIELLKVSVIELPL 364
Query: 381 KPACVDGIVTDLPFGK--RVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
VD I++D+PFGK ++G + L ++ +G G +LL S+ H
Sbjct: 365 PSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVG-------GTIVLLLSEDHH 414
>gi|167525148|ref|XP_001746909.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774689|gb|EDQ88316.1| predicted protein [Monosiga brevicollis MX1]
Length = 630
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 104/192 (54%), Gaps = 5/192 (2%)
Query: 285 RNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDIN 344
R+ E ++L+ ++A + R+A P P +V LDPMCG TI VE +P F+ DI+
Sbjct: 441 RHRTEQGYSSLQTSVAAGLGRIARPWPNEVCLDPMCGAMTIAVETVTEFPDVTFLNSDID 500
Query: 345 EKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNN 404
+ + +ANV + + + ++ + R L VD +V D+P+GKR
Sbjct: 501 RESLATGKANV-NACLPPSAQARILSFYASARHLPLGVGAVDRVVCDMPWGKRCSKPRLM 559
Query: 405 FLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSAL-WKCRKQIKINMSGMKSF 463
LY L L+E ++VRP GRA LLT RK + +H+T++ W+ + + N+ G+K++
Sbjct: 560 RKLYPLLLVEWARVVRPG-GRAYLLTMMRKCM--EMHLTTSTNWQQLDRRQCNVGGIKAY 616
Query: 464 VFILNRTADLFD 475
++ L RT + D
Sbjct: 617 LYTLERTDAVVD 628
>gi|198413849|ref|XP_002126292.1| PREDICTED: similar to THUMP domain containing 3 isoform 2 [Ciona
intestinalis]
Length = 388
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 99/202 (49%), Gaps = 40/202 (19%)
Query: 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNL---------- 362
+V +DPMCG G+IP+E ++ + V GD + + + NV N+G L
Sbjct: 151 EVVVDPMCGTGSIPLEGAMEWKGCLHVGGDNSGAAMERVSGNVGVNNGGLGVNLEKGDNL 210
Query: 363 ----------------NRELKVSP--------------LVCNVRQLCFKPACVDGIVTDL 392
NR L+++ + + +L ++ + +D VTDL
Sbjct: 211 GVSQVKRDSFEVNENGNRNLEINTEKISEEKLKYPVEVIRWDATRLPWRDSTIDVCVTDL 270
Query: 393 PFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQ 452
PFGKR+GS+ +N +LY FL E+ ++ + RA LLT DR+ + A + LW ++
Sbjct: 271 PFGKRMGSQHDNRVLYPRFLHELARVSKVGTSRACLLTYDRRSALNAFSKLNKLWSLKRT 330
Query: 453 IKINMSGMKSFVFILNRTADLF 474
+ +N+ G+++ V++L RT F
Sbjct: 331 VNVNIGGLRAAVYLLGRTKHKF 352
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 16 QITIEATVVTGFEDVVVEECQEKFGKDLLLMK-SIGRVFFNIDLKDIEKVKELRGIDNIL 74
++TI ATV TGFE V+E +K D++ + G+VFF + K+ +LR +D +
Sbjct: 12 EVTIGATVATGFEFTAVDEITKKI--DVVDYDITQGKVFFTATSECFAKIHQLRSVDKLF 69
Query: 75 FIIATFENF 83
++ +EN+
Sbjct: 70 LVVKRYENY 78
>gi|355751270|gb|EHH55525.1| hypothetical protein EGM_04747 [Macaca fascicularis]
Length = 473
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 147/337 (43%), Gaps = 50/337 (14%)
Query: 122 WKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKE------------S 169
W + IWK + + E+ ++ +D +K NEI I K+
Sbjct: 74 WLNAISIWKNLLELDA----KKEKLSQRDDNQLKRKVGENEIIIAKKLKIEQMQKIEENR 129
Query: 170 SCETEPQVNNVQIEKGDL-------QNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRV 222
C+ E Q+ +E+ D Q +E + DI + NQK L FRV
Sbjct: 130 DCQLEKQIEEETLEQRDFTTKSENFQEEEFRN-DIEKAIDTHNQKD---------LTFRV 179
Query: 223 TCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQT 280
+C G T+ E R G + + W DL + ++I + + + VG+PV +
Sbjct: 180 SCRCSGTIGKAFTAQEVGRVIGIAIMKHFGWKADLRNPRLEIFIHLNDVYSVVGIPVFRV 239
Query: 281 SLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVC 340
L R ++ L+ TIA+ M LA G LDPMCG GTI +E + +P ++V
Sbjct: 240 PLASRAYIK--TAGLRSTIAWAMASLADIKAGAFVLDPMCGLGTILLEAAKEWPDVYYVG 297
Query: 341 GDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK--RV 398
D+++ +L T N L +G E K+ L +V +L VD I++D+PFGK ++
Sbjct: 298 ADVSDSQLLGTWDN-LKAAG---LEDKIELLKVSVIELPLPSESVDIIISDIPFGKKFKL 353
Query: 399 GSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
G + L ++ +G G +LL S+ H
Sbjct: 354 GKDIKSILQEMERVLHVG-------GTIVLLLSEDHH 383
>gi|432904318|ref|XP_004077271.1| PREDICTED: THUMP domain-containing protein 2-like [Oryzias latipes]
Length = 497
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 100/429 (23%), Positives = 191/429 (44%), Gaps = 36/429 (8%)
Query: 22 TVVTGFEDVVVEECQEKF-GKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIATF 80
T G E + EE ++K +D+ + G+V F+ I +V L+ + + ++
Sbjct: 16 TAGNGMETFLTEEVKKKLLAEDVCQIP--GKVLFSSSAA-IHRVTSLKAAERLFLLLKKD 72
Query: 81 ENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNGVLY 140
+ + ++ +S LL ++ + + + W + + +++ G+
Sbjct: 73 SPLRMPTRCSRAEAASLLQSRLLANRDQWIGAA------VTWSR---LQRELLASKGLGG 123
Query: 141 PSIEQFNKYNDILRHKKSIRNEIN--IKKESSCETEPQVNNVQIEKGDLQNQELKEIDIN 198
+ Q + K R+E+ ++E E P+ + K D E+K ++ N
Sbjct: 124 TARSQRGGGTEDFAASKKHRSELREPQREEQHVEKPPEKKRM---KEDGAEAEIK-MESN 179
Query: 199 SMCSSQNQKTNFTNPEENL-----LKFRVTCN--RVGKHTVTSMESERAFGGKLNDTYFW 251
S CS K T +E + FR++C + +S E R G ++ W
Sbjct: 180 SFCS----KICLTGDDEASESVENVSFRISCKCSGSVSRSFSSQEVSRMMGAAVSRLLGW 235
Query: 252 LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIP 311
DL + ++++L + + +G+P+T+ L R+ ++ T L+ T+A+ M LA P
Sbjct: 236 KADLKNPLLEVSLHLSDDYCLLGIPLTRLPLANRSYIK--TTGLRSTVAWAMASLADIQP 293
Query: 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371
G +DPMCG GTI +E + + FV DI++ + + NVL +L + +++ L
Sbjct: 294 GFSVVDPMCGVGTILIEAAQEHQDACFVGVDIDDGQLQRANHNVLF--AHLGKSIQL--L 349
Query: 372 VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431
+ L VD +V DLPFG++ GS +N L L E+ +I+ P +LL+
Sbjct: 350 KASSMGLPLLSGTVDAVVCDLPFGRKFGSNTNMAADLPLILWEMERILCPGGTLVVLLSP 409
Query: 432 DRKHLIQAL 440
L++ L
Sbjct: 410 QLSCLLKKL 418
>gi|109102712|ref|XP_001110330.1| PREDICTED: THUMP domain-containing protein 2-like [Macaca mulatta]
Length = 503
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 147/337 (43%), Gaps = 50/337 (14%)
Query: 122 WKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKE------------S 169
W + IWK + + E+ ++ +D +K NEI I K+
Sbjct: 104 WLNAISIWKNLLELDA----KKEKLSQRDDNQLKRKVGENEIIIAKKLKIEQMQKIEENR 159
Query: 170 SCETEPQVNNVQIEKGDL-------QNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRV 222
C+ E Q+ +E+ D Q +E + DI + NQK L FRV
Sbjct: 160 DCQLEKQIEEETLEQRDFTTKSENFQEEEFRN-DIEKAIDTHNQKD---------LTFRV 209
Query: 223 TCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQT 280
+C G T+ E R G + + W DL + ++I + + + VG+PV +
Sbjct: 210 SCRCSGTIGKAFTAQEVGRVIGIAIMKHFGWKADLRNPKLEIFIHLNDVYSVVGIPVFRV 269
Query: 281 SLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVC 340
L R ++ L+ TIA+ M LA G LDPMCG GTI +E + +P ++V
Sbjct: 270 PLASRAYIK--TAGLRSTIAWAMASLADIKAGAFVLDPMCGLGTILLEAAKEWPDVYYVG 327
Query: 341 GDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK--RV 398
D+++ +L T N L +G E K+ L +V +L VD I++D+PFGK ++
Sbjct: 328 ADVSDSQLLGTWDN-LKAAG---LEDKIELLKVSVIELPLPSESVDIIISDIPFGKKFKL 383
Query: 399 GSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
G + L ++ +G G +LL S+ H
Sbjct: 384 GKDIKSILQEMERVLHVG-------GTIVLLLSEDHH 413
>gi|114577105|ref|XP_515428.2| PREDICTED: THUMP domain-containing protein 2 isoform 2 [Pan
troglodytes]
gi|410251344|gb|JAA13639.1| THUMP domain containing 2 [Pan troglodytes]
Length = 503
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 138/298 (46%), Gaps = 36/298 (12%)
Query: 150 NDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDL-------QNQELKEIDINSMCS 202
N+I+ K I I++ C+ E Q+ +E+ D Q +E + DI
Sbjct: 140 NEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRDFTTKSEKFQEEEFQN-DIEKAID 198
Query: 203 SQNQKTNFTNPEENLLKFRVTC---NRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYD 259
+ NQ N L FRV+C +GK T+ E + G + + W DL +
Sbjct: 199 THNQ---------NDLTFRVSCRCSGTIGK-AFTAQEVGKVIGIAIMKHFGWKADLRNPQ 248
Query: 260 IDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPM 319
++I + + + VG+PV + SL R ++ L+ TIA+ M LA G LDPM
Sbjct: 249 LEIFIHLNDIYSVVGIPVFRVSLASRAYIK--TAGLRSTIAWAMASLADIKAGAFVLDPM 306
Query: 320 CGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC 379
CG GTI +E + +P ++V D+++ +L T N L +G E K+ L +V +L
Sbjct: 307 CGLGTILLEAAKEWPDVYYVGADVSDSQLLGTWDN-LKAAG---LEDKIELLKISVIELP 362
Query: 380 FKPACVDGIVTDLPFGK--RVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
VD I++D+PFGK ++G + L ++ +G G +LL S+ H
Sbjct: 363 LPSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVG-------GTIVLLLSEDHH 413
>gi|90078897|dbj|BAE89128.1| unnamed protein product [Macaca fascicularis]
Length = 411
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 149/338 (44%), Gaps = 52/338 (15%)
Query: 122 WKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKE------------S 169
W + IWK + + E+ ++ +D +K NEI I K+
Sbjct: 12 WLNAISIWKNLLELDA----KKEKLSQRDDNQLKRKVGENEIIIAKKLKIEQMQKIEENR 67
Query: 170 SCETEPQVNNVQIEKGDL-------QNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRV 222
C+ E Q+ +E+ D Q +E + DI + NQK L FRV
Sbjct: 68 DCQLEKQIEEETLEQRDFTTKSENFQEEEFRN-DIEKAIDTHNQKD---------LTFRV 117
Query: 223 TC---NRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQ 279
+C +GK T+ E R G + + W DL + ++I + + + VG+PV +
Sbjct: 118 SCRCSGTIGK-AFTAQEVGRVIGIAIIKHFGWKADLRNPKLEIFIHLNDVYSVVGIPVFR 176
Query: 280 TSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFV 339
L R ++ L+ TIA+ M LA G LDPMCG GTI +E + +P ++V
Sbjct: 177 VPLASRAYIK--TAGLRSTIAWAMASLADIKAGAFVLDPMCGLGTILLEAAKEWPDVYYV 234
Query: 340 CGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK--R 397
D+++ +L T N L +G N K+ L +V +L VD I++D+PFGK +
Sbjct: 235 GADVSDSQLLGTWDN-LKAAGLEN---KIELLKVSVIELPLPSESVDIIISDIPFGKKFK 290
Query: 398 VGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
+G + L ++ +G G +LL S+ H
Sbjct: 291 LGKDIKSILQEMERVLHVG-------GTIVLLLSEDHH 321
>gi|254553431|ref|NP_079540.2| THUMP domain-containing protein 2 [Homo sapiens]
gi|342187042|sp|Q9BTF0.2|THUM2_HUMAN RecName: Full=THUMP domain-containing protein 2
gi|119620746|gb|EAX00341.1| THUMP domain containing 2, isoform CRA_b [Homo sapiens]
gi|119620747|gb|EAX00342.1| THUMP domain containing 2, isoform CRA_b [Homo sapiens]
Length = 503
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 136/297 (45%), Gaps = 34/297 (11%)
Query: 150 NDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDL-------QNQELKEIDINSMCS 202
N+I+ K I I++ C+ E Q+ +E+ D Q +E + DI
Sbjct: 140 NEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRDFTTKSEKFQEEEFQN-DIEKAID 198
Query: 203 SQNQKTNFTNPEENLLKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDI 260
+ NQ N L FRV+C G T+ E + G + + W DL + +
Sbjct: 199 THNQ---------NDLTFRVSCRCSGTIGKAFTAQEVGKVIGIAIMKHFGWKADLRNPQL 249
Query: 261 DINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
+I + + + VG+PV + SL R ++ L+ TIA+ M LA G LDPMC
Sbjct: 250 EIFIHLNDIYSVVGIPVFRVSLASRAYIK--TAGLRSTIAWAMASLADIKAGAFVLDPMC 307
Query: 321 GGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380
G GTI +E + +P ++V D+++ +L T N L +G E K+ L +V +L
Sbjct: 308 GLGTILLEAAKEWPDVYYVGADVSDSQLLGTWDN-LKAAG---LEDKIELLKISVIELPL 363
Query: 381 KPACVDGIVTDLPFGK--RVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
VD I++D+PFGK ++G + L ++ +G G +LL S+ H
Sbjct: 364 PSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVG-------GTIVLLLSEDHH 413
>gi|296224026|ref|XP_002757872.1| PREDICTED: THUMP domain-containing protein 2 [Callithrix jacchus]
Length = 504
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 152/330 (46%), Gaps = 36/330 (10%)
Query: 122 WKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVN--- 178
W + IWK + + E+ ++ +D +K NEI I K+ E ++
Sbjct: 105 WLNAISIWKNLLELDA----KKEKLSQRDDKQLKRKVGENEIIIAKKLKIEQMQKIEENR 160
Query: 179 NVQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEE--------NLLKFRVTC---NRV 227
+ Q+EK ++ + L++ D + S Q+ F N E N L FRV+C V
Sbjct: 161 DCQLEK-QIEEETLEQRDFTTK-SENFQEEEFQNDTEKATDTHNQNDLTFRVSCRCSGTV 218
Query: 228 GKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
GK T+ E + G L + W DL + ++I + + + VG+PV + L R
Sbjct: 219 GK-AFTAQEVGKVIGIALMKHFGWKADLRNPKLEIFIHLNDIYSVVGIPVFRVPLASRAY 277
Query: 288 VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKL 347
++ L+ TIA+ M LA G LDPMCG GTI +E + +P ++V D+++
Sbjct: 278 IK--TAGLRSTIAWAMASLADIKAGAFVLDPMCGLGTILLEAAKEWPDVYYVGADVSDSQ 335
Query: 348 VLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK--RVGSKSNNF 405
+L T N L +G E K+ L +V +L VD I++D+PFGK ++G
Sbjct: 336 LLGTWDN-LKAAG---LEDKIELLKVSVIELPLPSESVDIIISDIPFGKKFKLGEDIKRI 391
Query: 406 LLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
L ++ +G G +LL S+ H
Sbjct: 392 LQEMERVLHVG-------GTIVLLLSEDHH 414
>gi|355724181|gb|AES08138.1| THUMP domain containing 2 [Mustela putorius furo]
Length = 434
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 123/253 (48%), Gaps = 17/253 (6%)
Query: 150 NDILRHKKSIRNEINIKKES-SCETEPQVNNVQIEKGD-LQNQELKEIDINSMCSSQNQK 207
ND+ KK + +ES C+ E Q+ +E+GD L N+E S + QN+
Sbjct: 71 NDVTNPKKLKTEPMQELQESRECQPEKQMEEEPVEQGDFLMNRE------KSQKAFQNEV 124
Query: 208 TNFTN-PEENLLKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINL 264
+ P + L FRV+C G T T+ E R G L + W DL + +++I +
Sbjct: 125 VKAADDPSQKDLTFRVSCRCSGAIAKTFTAQEVGRVIGIALMKQFGWKADLRNPNLEIFI 184
Query: 265 QIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGT 324
+ + VG+PV + L R ++ L+ TIA+ M LA G DPMCG GT
Sbjct: 185 HLNDIYSVVGIPVFRVPLASRAYIK--TAGLRSTIAWAMASLAEIKAGAFVFDPMCGLGT 242
Query: 325 IPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPAC 384
I +E + +P ++V D+++ +L N L +G + K+ L +V +L
Sbjct: 243 ILLEAAKEWPDVYYVGADVSDSQLLGAYDN-LKAAGLQD---KIELLKVSVTELPLPSES 298
Query: 385 VDGIVTDLPFGKR 397
VD I++D+PFGK+
Sbjct: 299 VDVIISDIPFGKK 311
>gi|440794637|gb|ELR15794.1| methyltransferase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 435
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 111/466 (23%), Positives = 191/466 (40%), Gaps = 90/466 (19%)
Query: 21 ATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIATF 80
TV TG E+ EE K + + ++G+VF +E+V LR +D LF++A
Sbjct: 2 GTVPTGVEEAAREEISAKL-RPAAVHSTMGKVFMET-AAPLEEVTALRAVDR-LFLLALH 58
Query: 81 ENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLE--IDWKKYMEIWKQITNYNGV 138
S EDS VA + V+ IDW +++W++ Y+
Sbjct: 59 HP---SPNYPAEDS--------------LVAAFKAWVVSETIDWPAILDVWQKA--YHAH 99
Query: 139 LYPS----IEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQELKE 194
L P F Y D
Sbjct: 100 LRPPEVAPASGFGYYPD------------------------------------------- 116
Query: 195 IDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHT-------VTSMESERAFGGKLND 247
+ C + + + N + + F V+C R G T + ++ A +L
Sbjct: 117 ----TPCRRWDSRYAYAN---SGISFAVSCTRTGLRTKSLTSKQIAQHAADVAAECELWR 169
Query: 248 TYF-WLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRL 306
F W VDL+ + I + + VG+P+ ++ + +R + L+ +IAY M R
Sbjct: 170 AEFGWKVDLEQPALSIAIYATDDHFIVGIPLLESQVAKREHIRGK--GLRCSIAYAMCRA 227
Query: 307 ASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNREL 366
A G V LDPMCG GT +E ++ +P ++ GD+++ + + N + L
Sbjct: 228 AGVANGSVILDPMCGRGTTLLEGAVDWPDAHYIGGDLDDTTLEYARINAERLRESSLPGL 287
Query: 367 KVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA 426
+S + +L + VD +V+D+P+GKR GSK +N LY L E +++RP GR
Sbjct: 288 SLSLFKWDATRLPLRDRSVDVVVSDVPYGKRHGSKEDNRRLYPHLLEEFARVLRPG-GRV 346
Query: 427 ILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTAD 472
+LLT+ + +++ T ++ IN G+ +++F+ R D
Sbjct: 347 VLLTTLTR-IMEGAFATHKWTTLPRRALINNGGLNTYLFVATRKED 391
>gi|254553438|ref|NP_082414.1| THUMP domain-containing protein 2 [Mus musculus]
gi|342187135|sp|Q9CZB3.3|THUM2_MOUSE RecName: Full=THUMP domain-containing protein 2
gi|12849794|dbj|BAB28484.1| unnamed protein product [Mus musculus]
Length = 528
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 155/331 (46%), Gaps = 35/331 (10%)
Query: 122 WKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQ 181
W + + +WK++ ++ P E+ ++ + +K+ NE I K+ E + +V
Sbjct: 105 WLEAISLWKKLLEHD----PKREKVSQRDANPLKRKAGENETIIAKKLKVEEKQEVAK-- 158
Query: 182 IEKGDLQNQEL-------------KEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG 228
+ G+ Q +L E+ + + S+ + + + E+ L FRV+C G
Sbjct: 159 -DHGESQEDKLLQGSPEQGEAVTRTELQDHRLNSTTEKAADAQDQED--LTFRVSCRCTG 215
Query: 229 --KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRN 286
+ +T E+ R G L + W DL + +I+I + + + VG+P+ + L R
Sbjct: 216 NVRKVITGQEAGRVIGLALMRQFGWKADLRNPNIEIFMHLSDAYSVVGIPLLRMPLASRT 275
Query: 287 IVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEK 346
++ L+ TIA+ M +A G + LDPMCG GTI VE + +P F++ D+++
Sbjct: 276 YIQ--TAGLRSTIAWAMASIAEIKAGALVLDPMCGLGTILVEAAEEWPDVFYMGADMSDA 333
Query: 347 LVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFL 406
+L N L +G +R + L +V L D I++D+PFGK+ +
Sbjct: 334 QLLGACDN-LKAAGLTDR---IELLKSSVTDLPLPSQSTDVIISDIPFGKKFKLGKD--- 386
Query: 407 LYRLFLIEIGKIVRPQIGRAILLTSD-RKHL 436
+ L E+ +++R +LL+ D +HL
Sbjct: 387 -IKSILQEMERVLRVGGAMVLLLSEDHHRHL 416
>gi|301111970|ref|XP_002905064.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262095394|gb|EEY53446.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 409
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 134/275 (48%), Gaps = 27/275 (9%)
Query: 214 EENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYV 273
E+N +KFR +C R GKH S G ++ + + W V+L ++D ++ + I Y
Sbjct: 124 EDNEIKFRGSCVRDGKHKYNSQVVAGEVGARVVEKFGWTVNLTEFDAEVVVIIFYKFMVA 183
Query: 274 GLPVTQ----------TSLHRRNIVEFN-ITTLKPTIAYNMVRLASPIPGDVFLDPMCGG 322
G+ + + R + + + I+TL+P+ AY M++LA GDV LD MCG
Sbjct: 184 GIALADPRKIQFRNRLANESRSALADSDYISTLRPSTAYLMLQLAKHNYGDVVLDSMCGI 243
Query: 323 GTIPVECSLSYPH--TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380
GT+P+ CS + + + + G+++E K N + R V + +L
Sbjct: 244 GTLPI-CSADFTNDGVYALGGELDELPSGKAGQNA------VTRPRPVDIARWDSTRLPL 296
Query: 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQAL 440
+ VD ++ D+PFG R G++ N +Y E+ +I+RP GRA+LL +K A+
Sbjct: 297 RSHSVDRVMIDMPFGVRCGNQRQNNKMYPKVFKELLRILRPD-GRAVLLVMSKKLFKGAV 355
Query: 441 HITSALWKCR--KQIKINMSGMKSFVFILNRTADL 473
CR + +++ G+ ++++ +A +
Sbjct: 356 KDL----PCRVVAEHMVSIGGLGGGIYVIEPSASI 386
>gi|309790642|ref|ZP_07685195.1| putative RNA methylase [Oscillochloris trichoides DG-6]
gi|308227308|gb|EFO80983.1| putative RNA methylase [Oscillochloris trichoides DG6]
Length = 388
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 9/222 (4%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTY--FWLVDLDDYDIDINLQIRYNEAYVGLPV 277
FRV VGKH + RA + D + W + D++I + NE + +
Sbjct: 117 FRVIARTVGKHKFMRRDVGRAVADAVRDGWPGRWHPVEEGEDLEIWATLIDNELLCSIRL 176
Query: 278 TQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTF 337
+ S+ +R+ ++ +L+P +A MV+L P DVFLDPM G GTI +E + +
Sbjct: 177 SDASMRQRDKIKHLPASLRPALAAAMVQLTYPSASDVFLDPMAGAGTILLERAAAGRFAE 236
Query: 338 FVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397
GDIN + Q N+ G ++S + R+L + VD + +LPFGK+
Sbjct: 237 MHGGDINGDALAAMQVNLRGTRG------EISLSRWDARKLPLQDGEVDKVAVNLPFGKQ 290
Query: 398 VGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQA 439
+ +S LYR L EI +++RP GR ++L + + L A
Sbjct: 291 IADESVLPTLYREVLAEIARVLRPG-GRLVVLAGNVRVLESA 331
>gi|149036890|gb|EDL91508.1| similar to THUMP domain containing 3 (predicted), isoform CRA_c
[Rattus norvegicus]
Length = 288
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 134/309 (43%), Gaps = 65/309 (21%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE +E +EK LK ++ + RG
Sbjct: 32 SESEHLQVTIGATVPTGFEQTAADEVREK-------------------LKSSCRISKDRG 72
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
I F IA ES ++ L+D + K + W +++W
Sbjct: 73 --KIYFDIAV-------------------ESLAQEEVLRDFEELAGK---LPWSDPLKVW 108
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINI------KKESSCETEPQVNNVQIE 183
+ T + + R K N KK +S +P + +
Sbjct: 109 QINTTFKKKKAKRRKANQSAG---REKADCGQGDNAGEKDGKKKLASGAADPHILDY--- 162
Query: 184 KGDLQNQELKEI------DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSME 236
+N +KE ++ + +N ++ E + KFRVTCNR G KH TS E
Sbjct: 163 ---YENPAIKEEISTLIGEVLASGEDENGQSLREEAEPQVQKFRVTCNRAGEKHCFTSNE 219
Query: 237 SERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLK 296
+ R FGG + + + W D+ ++D+++ L I NE V + +T+ SLHRRNI F TTL+
Sbjct: 220 AARGFGGAVQEYFKWKADMTNFDVEVLLNIHNNEVIVAIALTEESLHRRNITHFGPTTLR 279
Query: 297 PTIAYNMVR 305
T+AY M+R
Sbjct: 280 STLAYGMLR 288
>gi|383421827|gb|AFH34127.1| THUMP domain-containing protein 2 [Macaca mulatta]
Length = 503
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 147/337 (43%), Gaps = 50/337 (14%)
Query: 122 WKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKE------------S 169
W + IWK + + E+ ++ +D +K NEI I K+
Sbjct: 104 WLNAISIWKNLLELDA----KKEKLSQRDDNQLKRKVGENEIIIAKKLKIEQMQKIEENR 159
Query: 170 SCETEPQVNNVQIEKGDL-------QNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRV 222
C+ E Q+ +E+ D Q +E + DI + NQK L FRV
Sbjct: 160 DCQLEKQIEEETLEQRDFTTKSENFQEEEFRN-DIEKAIDTHNQKD---------LTFRV 209
Query: 223 TCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQT 280
+C G T+ E R G + + W DL + ++I + + + VG+P+ +
Sbjct: 210 SCRCSGTIGKAFTAQEVGRVIGIAIIKHFGWKADLRNPKLEIFIHLNDVYSVVGIPMFRV 269
Query: 281 SLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVC 340
L R ++ L+ TIA+ M LA G LDPMCG GTI +E + +P ++V
Sbjct: 270 PLASRAYIK--TAGLRSTIAWAMASLADIKAGAFVLDPMCGLGTILLEAAKEWPDVYYVG 327
Query: 341 GDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK--RV 398
D+++ +L T N L +G E K+ L +V +L VD I++D+PFGK ++
Sbjct: 328 ADVSDSQLLGTWDN-LKAAG---LEDKIELLKVSVIELPLPSESVDIIISDIPFGKKFKL 383
Query: 399 GSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
G + L ++ +G G +LL S+ H
Sbjct: 384 GKDIKSILQEMERVLHVG-------GTIVLLLSEDHH 413
>gi|348686023|gb|EGZ25838.1| hypothetical protein PHYSODRAFT_326804 [Phytophthora sojae]
Length = 484
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 148/323 (45%), Gaps = 32/323 (9%)
Query: 165 IKKESSCETEPQVNNVQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNP-EENLLKFRVT 223
+ K +TE QI Q L E D +S Q P E++ + FR +
Sbjct: 83 LAKSDEIDTESDAGVKQI------GQLLVEADWDSAVKLWKQHA--VRPVEDDKITFRGS 134
Query: 224 CNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQT-SL 282
C R GKH S G ++ + + W V+L ++D+++ + I Y G+ + +
Sbjct: 135 CVRDGKHAYNSQVVAGEVGARVIEKFGWGVNLTEFDVEVVVVIFYKFMVAGIALADPRKI 194
Query: 283 HRRNIVEFN----------ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS 332
RN + ++TL+P+ AY M++LA GDV LD MCG GT+P+ CS
Sbjct: 195 QFRNRLANESRSALADSQYVSTLRPSTAYLMLQLAQHKYGDVVLDSMCGIGTLPI-CSAD 253
Query: 333 YPH--TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390
+ + + + G+++E K N + R V + +L + +D I+
Sbjct: 254 FTNDGVYALGGELDELPSGKAGQNA------VTRPRPVDIARWDSTRLPLRSHSIDRIMI 307
Query: 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCR 450
D+PFG R G++ N +Y E+ +++RP GRA+LL +K A + ++
Sbjct: 308 DMPFGVRCGNQRQNNKMYPKVFKELLRVLRPD-GRAVLLVMSKKLFKGA--VKDLPFRVV 364
Query: 451 KQIKINMSGMKSFVFILNRTADL 473
+ +++ G+ ++++ TA +
Sbjct: 365 AEHMVSIGGLAGGIYVIEPTASV 387
>gi|46199459|ref|YP_005126.1| methyltransferase [Thermus thermophilus HB27]
gi|46197085|gb|AAS81499.1| putative methyltransferase [Thermus thermophilus HB27]
Length = 335
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 126/275 (45%), Gaps = 13/275 (4%)
Query: 198 NSMCSSQNQKTNFTNPE-ENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD 256
+ + + + PE E FRV R G+H TS E ER G L+ Y VDL
Sbjct: 70 DPLGALERAALALPWPELEGAGSFRVEARREGEHPFTSPEVERRVGEALHRAYGVPVDLK 129
Query: 257 DYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFL 316
+ + + +R EA++G+ +T+ L RR +L P +A ++RLA PG L
Sbjct: 130 RPAVRVRVDVRGEEAFLGVQLTERPLSRRFPKAALRGSLTPVLAQALLRLADARPGMRVL 189
Query: 317 DPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV 375
DP G GTI +E + + P + GD++EK + + L + + R L+ +
Sbjct: 190 DPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLR-----ADA 244
Query: 376 RQLC-FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434
R L F P VD I+ + P G R+G K F LY FL ++ P GR LLT
Sbjct: 245 RHLPRFFPE-VDRILANPPHGLRLGRKEGLFHLYWDFLRGALALL-PPGGRVALLTLRPA 302
Query: 435 HLIQALHITSALWKCRKQIKINMSGMKSFVFILNR 469
L +AL AL R + G+ VF+L +
Sbjct: 303 LLKRALPPGFALRHAR---VVEQGGVYPRVFVLEK 334
>gi|269925142|ref|YP_003321765.1| putative RNA methylase [Thermobaculum terrenum ATCC BAA-798]
gi|269788802|gb|ACZ40943.1| putative RNA methylase [Thermobaculum terrenum ATCC BAA-798]
Length = 359
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 116/221 (52%), Gaps = 13/221 (5%)
Query: 251 WLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNI-TTLKPTIAYNMVRLASP 309
W + D+ +++ + + NE + G+ +T R ++++ +L+P+IA MV L+ P
Sbjct: 149 WRLVKDNSLVEVWITVIDNEVWGGVRLTPDYSKRYAYKQYHVEASLRPSIAAAMVWLSCP 208
Query: 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369
DVFLDP CG GTI +E +L+ + + D K++ + S N+ K
Sbjct: 209 RNDDVFLDPFCGAGTILIERALAGRYRLIIGSD-------KSREAIEVASSNIGPRYKPI 261
Query: 370 PL-VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428
L + + + VD IVT+ PFG R GSK +N LY FL E G+I++P GR ++
Sbjct: 262 ELHQWDATSIPLEHDSVDAIVTNPPFGYRYGSKESNKELYPAFLQEAGRILKPD-GRLVV 320
Query: 429 LTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNR 469
+T++ K + H+ W+ +K+ + GM++ +F + R
Sbjct: 321 VTTEDKLM---RHLIGQDWRELVTVKVWVLGMRATIFAMER 358
>gi|380258989|pdb|3TMA|A Chain A, Crystal Structure Of Trmn From Thermus Thermophilus
Length = 354
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 126/275 (45%), Gaps = 13/275 (4%)
Query: 198 NSMCSSQNQKTNFTNPE-ENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD 256
+ + + + PE E FRV R G+H TS E ER G L+ Y VDL
Sbjct: 89 DPLGALERAALALPWPELEGAGSFRVEARREGEHPFTSPEVERRVGEALHRAYGVPVDLK 148
Query: 257 DYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFL 316
+ + + +R EA++G+ +T+ L RR +L P +A ++RLA PG L
Sbjct: 149 RPAVRVRVDVRGEEAFLGVQLTERPLSRRFPKAALRGSLTPVLAQALLRLADARPGMRVL 208
Query: 317 DPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV 375
DP G GTI +E + + P + GD++EK + + L + + R L+ +
Sbjct: 209 DPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLR-----ADA 263
Query: 376 RQLC-FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434
R L F P VD I+ + P G R+G K F LY FL ++ P GR LLT
Sbjct: 264 RHLPRFFPE-VDRILANPPHGLRLGRKEGLFHLYWDFLRGALALL-PPGGRVALLTLRPA 321
Query: 435 HLIQALHITSALWKCRKQIKINMSGMKSFVFILNR 469
L +AL AL R + G+ VF+L +
Sbjct: 322 LLKRALPPGFALRHAR---VVEQGGVYPRVFVLEK 353
>gi|15593010|gb|AAL02176.1|AF403298_1 rRNA methyltransferase EmtA [Enterococcus faecium]
Length = 341
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 123/257 (47%), Gaps = 15/257 (5%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYF-WLVDLD-DYDIDINLQIRYNEAYVGLPV 277
F V +R GK T + E + +N Y W + ++ I+ L I ++ L +
Sbjct: 94 FWVNASRKGKQTYSRFELAKKAMEGINKRYPDWNIGTSQNHQIEFRLDIEHHNVIFSLRL 153
Query: 278 TQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHT 336
T + RN F+ +L P++A+ MV L+ P DVF+D CG GTI E + +YP
Sbjct: 154 TDATFRFRNQTRRFSRASLLPSVAHAMVWLSDPESKDVFVDFCCGSGTILSERA-TYPAN 212
Query: 337 FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK 396
+ GDI+E + ++N+ + KV V + R+L F CVD IVT+LPFG+
Sbjct: 213 QIIGGDISEAVTKIAKSNL--------DDSKVQVNVWDARKLPFSTGCVDKIVTNLPFGR 264
Query: 397 RVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKIN 456
++ + L +IE+ ++++P GRA++L+ L C + ++
Sbjct: 265 QISPDEDLELFNHHIMIEVCRVLKPN-GRAVILSESVNQLFWEAKRLGLF--CLESYPLS 321
Query: 457 MSGMKSFVFILNRTADL 473
+ G+ +F+ + L
Sbjct: 322 LKGVNPTLFVFEKQDGL 338
>gi|332227277|ref|XP_003262819.1| PREDICTED: THUMP domain-containing protein 2 isoform 1 [Nomascus
leucogenys]
Length = 503
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 136/297 (45%), Gaps = 34/297 (11%)
Query: 150 NDILRHKKSIRNEINIKKESSCETEPQVNNVQIEK-------GDLQNQELKEIDINSMCS 202
N+I+ K I I++ C+ E Q+ +E+ + Q +E + DI
Sbjct: 140 NEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRGFTTKSENFQEEEFQN-DIEKAID 198
Query: 203 SQNQKTNFTNPEENLLKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDI 260
+ NQ N L FRV+C G T+ E + G + + W DL + +
Sbjct: 199 THNQ---------NDLTFRVSCRCSGTIGKAFTAQEVGKVIGIAIMKHFGWKADLRNPKL 249
Query: 261 DINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
++ + + + VG+PV + SL R ++ L+ TIA+ M LA G LDPMC
Sbjct: 250 EVFIHLNDIYSVVGIPVFRVSLASRAYIK--TAGLRSTIAWAMASLADIKAGAFVLDPMC 307
Query: 321 GGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380
G GTI +E + +P ++V D+++ +L T N L +G E K+ L +V +L
Sbjct: 308 GLGTILLEAAKEWPDVYYVGADVSDSQLLGTWDN-LKAAG---LEDKIELLKVSVIELPL 363
Query: 381 KPACVDGIVTDLPFGK--RVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
VD I++D+PFGK ++G + L ++ +G G +LL S+ H
Sbjct: 364 PSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVG-------GTIVLLLSEDHH 413
>gi|291230546|ref|XP_002735229.1| PREDICTED: THUMP domain containing 2-like [Saccoglossus
kowalevskii]
Length = 574
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 105/422 (24%), Positives = 188/422 (44%), Gaps = 34/422 (8%)
Query: 21 ATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIATF 80
T V G E +V+E +EK + + K+ G V F+ D++ + L+ + +L I
Sbjct: 10 CTTVQGLEYFLVQEIKEKLQVEQVECKN-GNVLFSTG-SDVDSLHSLKSAERLL-IKVDH 66
Query: 81 ENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNGVLY 140
F N G+ +K + ++T + K L++ WK + E I + V
Sbjct: 67 RCVKFPN-------GRGKCRKKIKQITESISTWE-KSLQV-WKHFQERQNNIEDECSVEA 117
Query: 141 PSIEQFNKYN--DILRHKKSIRNEINIKKESSCETEPQVNNVQ----IEKGDLQNQELKE 194
S N D+ R +++ ++ + + + IE+G + LK+
Sbjct: 118 ESCNSGETCNNDDVWRKRENDSEHLDKRMRTETSDSDVAMDAHSGKSIERGGM----LKD 173
Query: 195 IDIN---SMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERA--FGGKLNDTY 249
D N SM +S+ K ++ N ++FR+TC VGK E A G L +
Sbjct: 174 DDENQHLSMETSEIDKLSYNNTATENVRFRITCKCVGKAKKYHSPQEFAICMGTCLARKF 233
Query: 250 FWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASP 309
W +D+ ++I + + + +G P T L +R+ ++ T ++ TIA+ M +LA
Sbjct: 234 GWQIDVRKPQLEILVFVTPTDFLIGFPTTHDYLSKRSYIK--KTGMRSTIAWCMCQLAEL 291
Query: 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369
G + LDPMC G I +E S + + D + + + + N+ + S N +L
Sbjct: 292 QSGHLLLDPMCASGIIVLEALKSCKKVYCIGCDHHSRQLEQAALNIQYASMNETMQL--- 348
Query: 370 PLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429
+ + + + K VD ++ DLPFG + + Y FL E+ ++V+ GRA+LL
Sbjct: 349 -MQTDAKGIPLKMNSVDRVICDLPFGLHHNTHIDIKQFYLSFLGEVTRVVKSN-GRAVLL 406
Query: 430 TS 431
TS
Sbjct: 407 TS 408
>gi|384431707|ref|YP_005641067.1| THUMP domain-containing protein [Thermus thermophilus SG0.5JP17-16]
gi|333967175|gb|AEG33940.1| THUMP domain-containing protein [Thermus thermophilus SG0.5JP17-16]
Length = 335
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 126/275 (45%), Gaps = 13/275 (4%)
Query: 198 NSMCSSQNQKTNFTNPE-ENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD 256
+ + + + PE E FRV R G+H TS E ER G L+ Y VDL
Sbjct: 70 DPLGALERAALALPWPELEGAGSFRVEARREGEHPFTSPEVERRVGEALHRAYGVPVDLK 129
Query: 257 DYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFL 316
+ + + +R EA++G+ +T+ L R +L P +A ++RL+ PG L
Sbjct: 130 RPAVRVRVDVRGEEAFLGVQLTERPLSHRFPKAALRGSLTPVLAQALLRLSGARPGMRLL 189
Query: 317 DPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV 375
DP G GT+ +E + + P + GD++EK + + L + + R L+ +
Sbjct: 190 DPFTGSGTVALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLR-----ADA 244
Query: 376 RQLC-FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434
R L F P VD I+ + P G R+G K F LYR FL ++ P GR LLT
Sbjct: 245 RHLPRFFPE-VDRILANPPHGFRLGRKEELFRLYRDFLRGALALL-PPGGRVALLTLRPA 302
Query: 435 HLIQALHITSALWKCRKQIKINMSGMKSFVFILNR 469
L +AL AL R + G+ VF+L +
Sbjct: 303 LLKRALPRGFALRHAR---VVEQGGVYPRVFVLEK 334
>gi|219847944|ref|YP_002462377.1| putative RNA methylase [Chloroflexus aggregans DSM 9485]
gi|219542203|gb|ACL23941.1| putative RNA methylase [Chloroflexus aggregans DSM 9485]
Length = 379
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 117/249 (46%), Gaps = 13/249 (5%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTY--FWLVDLDDYDIDINLQIRYNEAYVGLPV 277
FRV VGKH E RA + D + W ++ D+++ + E V + +
Sbjct: 115 FRVVARMVGKHRFQRYELGRAVSDAIRDGWPGRWQPVNEEADLEVWATLIEQELIVAIRL 174
Query: 278 TQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTF 337
+ SL R + +L+P +A MV L P D+FLDPM G GTI +E + + P T
Sbjct: 175 SDASLRIRGKIAHLPASLRPALAATMVMLTQPAADDIFLDPMAGVGTILLERAAAGPFTA 234
Query: 338 FVCGDINEKLVLKTQANV--LHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFG 395
GDI+ V QAN+ +H + R N +L A V + +LPFG
Sbjct: 235 LYGGDISPAAVTAMQANLRGIHGQITVRR--------WNATKLPLPDASVTKVAVNLPFG 286
Query: 396 KRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKI 455
++G + LY L +I ++++P GR + L ++++ L +A + + + + ++
Sbjct: 287 TQIGEGEDLEELYHDVLRQIARVLKPG-GRLVTLVANQQLLDRARTHAAPVLRATARHRV 345
Query: 456 NMSGMKSFV 464
+ G ++ +
Sbjct: 346 LVLGHRATI 354
>gi|327262687|ref|XP_003216155.1| PREDICTED: THUMP domain-containing protein 2-like [Anolis
carolinensis]
Length = 474
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 98/378 (25%), Positives = 163/378 (43%), Gaps = 47/378 (12%)
Query: 50 GRVFFNIDLKDIEKVKELRGIDNILFIIATFENFGFS-NKGTEEDSGQKDESDLLKDKLK 108
G+VFF D++ +K+L+ + + ++ + S NKG K
Sbjct: 13 GKVFFTTG-ADLDTLKKLKSAERLFLLLDKYPPLAVSRNKG------------------K 53
Query: 109 DVATIQNKVLEID--WKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIK 166
V IQN V E W + WK + + + P + N K+ + +E NI
Sbjct: 54 VVHDIQNLVKENPSCWLDIVAFWKHLHDQDS--NPGVLPQKCPNS---QKRKLEDERNII 108
Query: 167 KESSCETEPQVNNVQIEKGDLQNQELKEIDINSMCSSQNQKTNF--TNPEE--------- 215
K +++P + V E G ++ Q+ +I S +Q + F T PE
Sbjct: 109 KNKKQKSDPVLERVPAE-GQVEKQQRCDISEAHKDSDVSQVSPFIETAPEHLQEKPLESN 167
Query: 216 NLLKFRVTCNRVG--KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYV 273
+ FRV+C G T T+ E R G L + W DL DI+I + + +
Sbjct: 168 SYFSFRVSCRCSGLLAKTFTAQEMGRIIGIALMKNFGWKADLRHPDIEIFVHLNDIYCII 227
Query: 274 GLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY 333
G+PV + L R + L+ TIA+ MV LA G LDP CG GTI +E ++ +
Sbjct: 228 GIPVFRLPLSNRAYIR--TIGLRSTIAWAMVSLAEIKAGAFVLDPTCGLGTILLEAAMEW 285
Query: 334 PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLP 393
P ++ DI++ + N+ + NL ++++ L +V L +D ++ D+P
Sbjct: 286 PDVNYLGTDISDAQLQGAYTNI--KAANLMDKIQL--LKASVTALPLPSESIDVVLADIP 341
Query: 394 FGKRVGSKSNNFLLYRLF 411
FGK+ + LL +F
Sbjct: 342 FGKKFKITKDMELLPDVF 359
>gi|26328641|dbj|BAC28059.1| unnamed protein product [Mus musculus]
Length = 451
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 138/291 (47%), Gaps = 30/291 (10%)
Query: 122 WKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQ 181
W + + +WK++ ++ P E+ ++ + +K+ NE I K+ E + +V
Sbjct: 105 WLEAISLWKKLLEHD----PKREKVSQRDANPLKRKAGENETIIAKKLKVEEKQEVAK-- 158
Query: 182 IEKGDLQNQEL-------------KEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG 228
+ G+ Q +L E+ + + S+ + + + E+ L FRV+C G
Sbjct: 159 -DHGESQEDKLLQGSPEQGEAVTRTELQDHRLNSTTEKAADAQDQED--LTFRVSCRCTG 215
Query: 229 --KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRN 286
+ +T E+ R G L + W DL + +I+I + + + VG+P+ + L R
Sbjct: 216 NVRKVITGQEAGRVIGLALMRQFGWKADLRNPNIEIFMHLSDAYSVVGIPLLRMPLASRT 275
Query: 287 IVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEK 346
++ L+ TIA+ M +A G + LDPMCG GTI VE + +P F++ D+++
Sbjct: 276 YIQ--TAGLRSTIAWAMASIAEIKAGALVLDPMCGLGTILVEAAEEWPDVFYMGADMSDA 333
Query: 347 LVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397
+L N L +G +R + L +V L D I++D+PFGK+
Sbjct: 334 QLLGACDN-LKAAGLTDR---IELLKSSVTDLPLPSQSTDVIISDIPFGKK 380
>gi|291386887|ref|XP_002709794.1| PREDICTED: THUMP domain containing 2 [Oryctolagus cuniculus]
Length = 504
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 172/391 (43%), Gaps = 45/391 (11%)
Query: 22 TVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIATFE 81
T G E ++ E Q + + S G+VFF+ D+ +K+L+ + + +I
Sbjct: 21 TAGRGLEPFLMREVQARLAATQVEYIS-GKVFFSTS-SDLNMLKKLKSAERLFLLIKKQL 78
Query: 82 NFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLE--IDWKKYMEIWKQITNYNGVL 139
F S+ K K + IQ + + +W + IWK + N
Sbjct: 79 PFTVSSV----------------SKGKIFSEIQRLINDDPGNWLNVISIWKNLLELNT-- 120
Query: 140 YPSIEQFNKYNDILRHKKSIRNEINIKKESSCET--------EPQVNNVQIEKGDLQNQE 191
E+ + + +K NE + K+S E E QV + E+ Q +
Sbjct: 121 --ENEKLPQRDTNPLKRKVGENETVVAKKSKTEQTQKIEENRECQVGKQREEETLEQREP 178
Query: 192 LKEIDINSMCSSQNQ--KTNFTNPEENLLKFRVTC---NRVGKHTVTSMESERAFGGKLN 246
+ + +S+N + T+P+ +L FRV+C VGK VT+ E R G L
Sbjct: 179 VATREELPEAASENDVGEAVETHPQGHL-TFRVSCRCSGTVGK-AVTAQEVGRVIGIALM 236
Query: 247 DTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRL 306
+ W DL D ++++ + + + VG+PV + L R ++ L+ TIA+ M L
Sbjct: 237 RQFGWKADLRDPNLEVFIHLNDIYSVVGIPVLRVPLASRAYIK--TAGLRSTIAWAMASL 294
Query: 307 ASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNREL 366
A G LDPMCG GTI +E + +P F+V D ++ +L NV + L E
Sbjct: 295 AEIKAGAFVLDPMCGLGTILLEAAKEWPDVFYVGADASDSQLLGACDNV--KAAGL--ED 350
Query: 367 KVSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397
K+ L +V +L VD I++D+PFGK+
Sbjct: 351 KIELLQLSVLELPLPSESVDIIISDIPFGKK 381
>gi|410955417|ref|XP_003984350.1| PREDICTED: THUMP domain-containing protein 2 [Felis catus]
Length = 503
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 114/426 (26%), Positives = 195/426 (45%), Gaps = 45/426 (10%)
Query: 22 TVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIA-TF 80
T G E ++ E + + + S G+VFF D+ +K+L+ + + +I F
Sbjct: 21 TAGRGLEPFLMREVRARLAATQVEYIS-GKVFFTT-CSDLNMLKKLKSAERLFLLIKKQF 78
Query: 81 E-NFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNGVL 139
N +KG Q+ +D + L ++T ++ +LE+D KK +++++ N
Sbjct: 79 PLNVSSVSKGKILSEIQRLINDDPESWLNAISTWKS-LLELDAKKD-KLFQRAAN----- 131
Query: 140 YPSIEQFNKYNDILRHKKSIRNEINIKKESS-CETEPQVNNVQIEKGDL-----QNQELK 193
P + + NDI+ KK ++ +ES C E Q E+GD ++QE
Sbjct: 132 -PPKRKVEE-NDIINAKKLKTEQLQELQESGECPLEKQTEEETQEQGDFFTEREKSQEAF 189
Query: 194 EIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFW 251
+ D+ ++NQ N L FRV+C G T T+ E R G L + W
Sbjct: 190 QNDVVKAADAKNQ---------NNLTFRVSCRCSGAIAKTFTAQEVGRITGIALMKQFGW 240
Query: 252 LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIP 311
DL + +++I + + + VG+PV + L R ++ L+ TIA+ + LA
Sbjct: 241 KADLRNPNLEIFIHLNDIYSVVGIPVFRVPLASRAYIK--TAGLRSTIAWALASLAEIQA 298
Query: 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371
G LDPMCG GTI +E + +P ++V D+++ +L N L +G N K+ L
Sbjct: 299 GAFVLDPMCGLGTILLEAAKEWPDVYYVGADVSDSQLLGAYDN-LKAAGLKN---KIELL 354
Query: 372 VCNVRQLCFKPACVDGIVTDLPFGK--RVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429
+V L VD I++D+PFGK ++G + L ++ +G G +LL
Sbjct: 355 QVSVIDLPLPSESVDVIISDIPFGKKFKLGEDIKSILQEMERVLHVG-------GAIVLL 407
Query: 430 TSDRKH 435
S+ H
Sbjct: 408 LSEEHH 413
>gi|431912741|gb|ELK14759.1| THUMP domain-containing protein 2 [Pteropus alecto]
Length = 492
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 171/381 (44%), Gaps = 26/381 (6%)
Query: 22 TVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIATFE 81
TV G E +++E + + + S G+VFF D+ +K L+ + + +I +
Sbjct: 10 TVGRGLEPFLMQEVRARLEATQVEYIS-GKVFFTTS-SDLNVLKTLKSAERLFLLIK--K 65
Query: 82 NFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNGVLYP 141
F F+ + + L+ D D + N + WK +E+ + +
Sbjct: 66 QFPFNVSSVSKGKMFSEMQTLIND---DPESWLNAI--SIWKSLLELDAEKEKLSQRHAN 120
Query: 142 SIEQFNKYNDILRHKKSIRNEINIKKE-SSCETEPQVNNVQIEKGDL--QNQELKEIDIN 198
+++ ND + KK ++ +E C E Q+ +E+G+L + + +E N
Sbjct: 121 PLKRKLGENDTIISKKLKTEQMQATQEIGDCPLEKQIEEETLEQGNLLPKRETFQEEFQN 180
Query: 199 SMCSSQNQKTNFTNPEENLLKFRVTCNRVG--KHTVTSMESERAFGGKLNDTYFWLVDLD 256
+ + N +N L FRV+C G T T+ E R G L + W DL
Sbjct: 181 GIAKAVNTHN------QNGLTFRVSCRCSGTVAKTFTAQEVGRIIGIALMKQFGWKADLR 234
Query: 257 DYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFL 316
+ +++I + + + VG+PV + L R ++ L+ T+A+ M +A G L
Sbjct: 235 NPNLEIFIHLNDMYSVVGIPVFRVPLASRAYIK--TAGLRSTVAWAMASVAEIKAGMFVL 292
Query: 317 DPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376
DPMCG GTI +E + +P ++V D++ +L N L +G + K+ L +V
Sbjct: 293 DPMCGLGTILLEAAKEWPDVYYVGADVSNSQLLGACDN-LKAAGLKD---KIELLKVSVI 348
Query: 377 QLCFKPACVDGIVTDLPFGKR 397
+L VD I++D+PFGK+
Sbjct: 349 ELPLPSESVDIIISDIPFGKK 369
>gi|344288866|ref|XP_003416167.1| PREDICTED: THUMP domain-containing protein 2 [Loxodonta africana]
Length = 511
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 104/425 (24%), Positives = 182/425 (42%), Gaps = 42/425 (9%)
Query: 22 TVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIATFE 81
T G E ++ E + + + S G+VFF D+ +K+L+ + + +I +
Sbjct: 28 TAGRGLEPFLMREVRARVAATQVEYVS-GKVFFTT-CSDLSMLKKLKSAERLFLLIK--K 83
Query: 82 NFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEI-WKQITNYNGVLY 140
F + + + L+ D D + N + WK +E+ K G +
Sbjct: 84 QFPLTVSSAGKGKMLNEMQGLIND---DPGSWLNAISL--WKSLLELDAKNEKLSQGSSH 138
Query: 141 PSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDL-------QNQELK 193
P + + I+ K IK+ C ++ +++ D Q +E +
Sbjct: 139 PLKRKVEENETIIAKKFKTEQMQEIKENKDCHPGKRIGEETLQQEDFITKTENFQEEEFR 198
Query: 194 EIDINSMCSSQNQKTNFTNPEENLLKFRVTC---NRVGKHTVTSMESERAFGGKLNDTYF 250
D+ NQK L FRV+C VGK T T+ E R G L +
Sbjct: 199 N-DVEKAIVGHNQKD---------LTFRVSCRCSGAVGK-TFTAQEVGRVIGIALMKQFG 247
Query: 251 WLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPI 310
W DL + D++I + + + VG+P + L R ++ L+ TIA+ M LA
Sbjct: 248 WKADLRNPDLEIFIHLNDIYSVVGIPFFRVPLANRAYIQ--TAGLRSTIAWAMASLAEIQ 305
Query: 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370
G + LDPMCG GTI +E + +P ++V D+++ +L N L +G +R +
Sbjct: 306 AGALVLDPMCGLGTILLEAAKEWPDVYYVGADVSDSQLLGACEN-LKAAGLEDR---IEL 361
Query: 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430
L +V +L V+ I++D+PFGK+ + + L E+ +++R G +LL
Sbjct: 362 LKASVIELPLPSESVNIIISDIPFGKKFKLGKD----IKSILQEMERVLRID-GAVVLLL 416
Query: 431 SDRKH 435
S+ H
Sbjct: 417 SEDHH 421
>gi|403269660|ref|XP_003926835.1| PREDICTED: THUMP domain-containing protein 2 [Saimiri boliviensis
boliviensis]
Length = 503
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 133/288 (46%), Gaps = 24/288 (8%)
Query: 122 WKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVN-NV 180
W + IWK + + E+ ++ +D +K NEI I K+ E ++ N
Sbjct: 105 WLNAISIWKNLLELDA----KKEKLSQRDDNQMKRKVGENEIIIAKKLKIEQMQKMEENR 160
Query: 181 QIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEE--------NLLKFRVTC---NRVGK 229
+ G + L++ D + Q+ F N E N L FRV+C VGK
Sbjct: 161 DCQLGKQIEETLEQRDFTTK-RENFQEEAFQNDTEKATETHNQNDLTFRVSCRCSGTVGK 219
Query: 230 HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE 289
T+ E + G L + W DL + ++I + + + VG+PV + L R ++
Sbjct: 220 -AFTAQEVGKVIGIALMKHFGWKADLRNPKLEIFIHLNDIYSVVGIPVFRVPLASRAYIK 278
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
L+ TIA+ M LA G LDPMCG GTI +E + +P ++V D+++ +L
Sbjct: 279 --TAGLRSTIAWAMASLADIKAGAFVLDPMCGLGTILLEAAKEWPDVYYVGADVSDSQLL 336
Query: 350 KTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397
T N L +G E K+ L +V +L VD I++D+PFGK+
Sbjct: 337 GTWDN-LKAAG---LEDKIELLKVSVVELPLPSESVDIIISDIPFGKK 380
>gi|395846089|ref|XP_003795747.1| PREDICTED: THUMP domain-containing protein 2 [Otolemur garnettii]
Length = 476
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 149/333 (44%), Gaps = 42/333 (12%)
Query: 122 WKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKE------------S 169
W + IWK + + E+F + L +K+ NEI K+
Sbjct: 80 WLNAISIWKNLLELDA----KKEEFPHKDAKLLKRKTGDNEIITAKKLKIEQMQKKEENR 135
Query: 170 SCETEPQVNNVQIEKGDL--QNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTC--- 224
C+ E Q+ +E+ D + + +E + +K T+ ++N L FRV+C
Sbjct: 136 KCQLEKQIKEESLEQRDFITKRENFQEEEFQG----DTEKAAVTH-DQNNLTFRVSCRCS 190
Query: 225 NRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHR 284
VGK T+ E + G L + W DL + ++++ + + + VG+PV + L
Sbjct: 191 GTVGK-AFTAQEVGKVIGIALMKQFGWKADLRNPNLEVFIHLNDIYSLVGIPVFRVPLAN 249
Query: 285 RNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDIN 344
R + L+ TIA+ M LA G LDPMCG GTI +E + +P ++V D++
Sbjct: 250 RAYI--RTAGLRATIAWAMASLAEIRAGAFVLDPMCGLGTILLEAAKEWPDVYYVGADVS 307
Query: 345 EKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK--RVGSKS 402
+ +L N L +G + K+ L +V +L VD I++D+PFGK ++G
Sbjct: 308 DSQLLGACDN-LRAAGLKD---KIELLKVSVIELPLPSESVDVIISDIPFGKKFKLGKDI 363
Query: 403 NNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
+ L ++ +G G +LL S+ H
Sbjct: 364 KSILQEMERVLHVG-------GTIVLLLSEDHH 389
>gi|224046866|ref|XP_002188364.1| PREDICTED: THUMP domain-containing protein 2-like, partial
[Taeniopygia guttata]
Length = 476
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 111/220 (50%), Gaps = 10/220 (4%)
Query: 218 LKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGL 275
L FRV+C G +TS E RA G + W DL D D++I + + ++ VG+
Sbjct: 195 LSFRVSCRCSGAIARILTSQEVGRAIGTAMVKQCGWHADLRDPDLEIFVHLNDIQSVVGI 254
Query: 276 PVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH 335
P+ + L R + + L+ T+A+ M LA G + LDPMCG GTI +E + +P
Sbjct: 255 PLFRLPLANREYI--RTSGLRSTVAWAMASLAEIRAGALVLDPMCGLGTILLEAAKEWPE 312
Query: 336 TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFG 395
++ DI++ + N+ + ++ K+ L +V+ L D +++D+PFG
Sbjct: 313 AYYWGADISDSQLEGADGNI-RAACFMD---KIELLKASVKALPLPSESFDSVISDIPFG 368
Query: 396 KRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
K+ + S+ LL + L E+ +++R G +LL S H
Sbjct: 369 KKFKTTSDAQLLPDI-LQEMQRVLRVG-GTLVLLLSQELH 406
>gi|392398699|ref|YP_006435300.1| N6-adenine-specific DNA methylase [Flexibacter litoralis DSM 6794]
gi|390529777|gb|AFM05507.1| putative N6-adenine-specific DNA methylase [Flexibacter litoralis
DSM 6794]
Length = 365
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 124/264 (46%), Gaps = 16/264 (6%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQ 279
FR + R G H TS+E + G + Y V L +Y+ ++ + + N +VG +T
Sbjct: 103 FRASAERYGTHDFTSIEMAKHIGHTIILRYQIPVSLTEYEYNVRVDVIGNFVFVGYQITD 162
Query: 280 TSL-HRRNIVE----------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVE 328
+L HR+ + + + K T+AY+++ LA GD LD CGGGTI +E
Sbjct: 163 DTLAHRKGVGQGKYNKIERSFHHRAATKHTLAYHLLTLAGLKEGDSLLDCTCGGGTIVLE 222
Query: 329 CSLSYPHTF-FVCGDINEKLVLKTQANVLHNSGNL--NRELKVSPLVCNVRQLCFKPACV 385
+ + + GD++EK + T+ N+ N+ + EL L ++ K +
Sbjct: 223 AASMFGDKIKILAGDMHEKAIEGTKENLKLNNFDFVETTELNARHLNETIQDYVLKNGEI 282
Query: 386 DGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSA 445
D IV +LPFG + G + N LY FL KI+ G+ ++LT R+ + + +
Sbjct: 283 DKIVCNLPFGIQSGKQVNMRGLYDQFLSSAAKILSKN-GKIVVLTM-RQGVFREVIFMIK 340
Query: 446 LWKCRKQIKINMSGMKSFVFILNR 469
+K K+ G+ +F++ +
Sbjct: 341 KYKITKEYVTEAGGLYLHIFVIEK 364
>gi|163848859|ref|YP_001636903.1| putative RNA methylase [Chloroflexus aurantiacus J-10-fl]
gi|222526814|ref|YP_002571285.1| putative RNA methylase [Chloroflexus sp. Y-400-fl]
gi|163670148|gb|ABY36514.1| putative RNA methylase [Chloroflexus aurantiacus J-10-fl]
gi|222450693|gb|ACM54959.1| putative RNA methylase [Chloroflexus sp. Y-400-fl]
Length = 378
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 103/220 (46%), Gaps = 10/220 (4%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTY--FWLVDLDDYDIDINLQIRYNEAYVGLPV 277
FRV VGKH+ + RA + D + W +D D+++ + E V + +
Sbjct: 116 FRVVTRMVGKHSFHRRDVGRAVADAIRDGWPGRWQPVDEDADLEVWATLFEQELIVAIRL 175
Query: 278 TQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTF 337
+ S+ R+ +L+P +A MV L P D+FLDPM G GT+ +E + + P T
Sbjct: 176 SDASMRLRDKAAHLPASLRPALAAAMVMLTYPQADDIFLDPMAGAGTLLLERAAAGPFTA 235
Query: 338 FVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397
GDI+ V N+ G + N +L A V+ + +LPFG +
Sbjct: 236 LYGGDISPAAVSAMNTNLRQIRGQIQIRR------WNAARLPLPDASVNKVAVNLPFGNQ 289
Query: 398 VGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLI 437
+ + LYR L +I ++++P GR + L +D +HL+
Sbjct: 290 INEGDDLAELYRDVLQQIARVLKPG-GRLVTLVAD-QHLL 327
>gi|126304538|ref|XP_001363910.1| PREDICTED: THUMP domain-containing protein 2-like [Monodelphis
domestica]
Length = 510
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 154/342 (45%), Gaps = 33/342 (9%)
Query: 122 WKKYMEIWKQITNYNG-----VLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQ 176
W + IW+ + V P + +I+ K I + + ++ C+ E Q
Sbjct: 113 WVHAISIWRSLLELEEKLPLEVSKPHKRTARENENIITKKLKIEQTLVMLGDTECQLEKQ 172
Query: 177 VNNVQIEKGDLQNQE--LKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG--KHTV 232
N+ E +L+ ++ +E N + + FT FRV+C G T
Sbjct: 173 KNDKPQEHENLKTEKENFQEESENDGEKGADHQGQFT--------FRVSCRCSGTIAKTF 224
Query: 233 TSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNI 292
T+ E R G L + W DL + ++I + + + VG+PV + L R ++ +
Sbjct: 225 TTEEVGRVIGIALIKQFGWKADLRNPKLEIFIHLNDIYSVVGIPVFRLPLASRAYIK--V 282
Query: 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQ 352
L+ TIA+ M LA G V LDPMCG GTI +E + +P+ +++ D+++ L
Sbjct: 283 AGLRSTIAWTMASLAEINVGAVVLDPMCGLGTILLEAAKEWPNAYYLGADVSDS-QLSGA 341
Query: 353 ANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK--RVGSKSNNFLLYRL 410
+ L ++G ++R + L +V +L VD I++D+PFGK ++G + L
Sbjct: 342 CDNLKSAGLVDR---IELLKFSVTELPLLSKSVDVIISDIPFGKKFKLGKDIKSILHEME 398
Query: 411 FLIEIGKIVRPQIGRAILLTSDRKHL-IQALHITSALWKCRK 451
++ +G G +LL S+ H +Q ++ LW K
Sbjct: 399 RVLCVG-------GTIVLLLSEELHRNLQGGKESNVLWNSSK 433
>gi|148706589|gb|EDL38536.1| mCG15884, isoform CRA_b [Mus musculus]
Length = 514
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 138/292 (47%), Gaps = 30/292 (10%)
Query: 121 DWKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVN-- 178
W + + +WK++ ++ P E+ ++ + +K+ NE I K+ E + +V
Sbjct: 112 SWLEAISLWKKLLEHD----PKREKVSQRDANPLKRKAGENETIIAKKLKVEEKQEVAKD 167
Query: 179 ----------NVQIEKGD-LQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRV 227
E+G+ + EL++ +NS +K +E+L FRV+C
Sbjct: 168 HGESQEDKLLQGSPEQGEAVTRTELQDHRLNS----TTEKAADAQDQEDL-TFRVSCRCT 222
Query: 228 G--KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRR 285
G + +T E+ R G L + W DL + +I+I + + + VG+P+ + L R
Sbjct: 223 GNVRKVITGQEAGRVIGLALMRQFGWKADLRNPNIEIFMHLSDAYSVVGIPLLRMPLASR 282
Query: 286 NIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINE 345
++ L+ TIA+ M +A G + LDPMCG GTI VE + +P F++ D+++
Sbjct: 283 TYIQ--TAGLRSTIAWAMASIAEIKAGALVLDPMCGLGTILVEAAEEWPDVFYMGADMSD 340
Query: 346 KLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397
+L N L +G +R + L +V L D I++D+PFGK+
Sbjct: 341 AQLLGACDN-LKAAGLTDR---IELLKSSVTDLPLPSQSTDVIISDIPFGKK 388
>gi|449275219|gb|EMC84142.1| THUMP domain-containing protein 2, partial [Columba livia]
Length = 378
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 98/402 (24%), Positives = 181/402 (45%), Gaps = 48/402 (11%)
Query: 49 IGRVFFNIDLKDIEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLK 108
+G+VFF+ + ++ ++K+L+ + + ++ S ++ +L D
Sbjct: 7 LGKVFFSTE-AELGELKKLKSGERLFLLLKKQTPLAVS----------RNRGKMLHD--- 52
Query: 109 DVATIQNKVLEID--WKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIK 166
I++ V+E W + IW+ + G + Q N+ L+ K I K
Sbjct: 53 ----IKSLVIEEPDYWLDVISIWRNLHGCKGK-KDDVSQENRLP--LKRKSEEETNIATK 105
Query: 167 KESSCETEPQVNNVQIEKGDLQNQE---LKEIDINSMCSSQNQKT----NFTNPEENL-- 217
++ + QV E G ++ E + E + C ++++ + + ++ EE +
Sbjct: 106 RQKT----QQVRETMSEDGHVEAGESCVVPERKSDQDCWTESKASLENASKSSGEEPIVN 161
Query: 218 --LKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYV 273
L FRV+C G +TS E RA G L + W DL + D++I + + + V
Sbjct: 162 EKLSFRVSCRCSGAIAKILTSQEIGRAIGIALMKQFGWRADLRNPDLEIFVHLNDIHSVV 221
Query: 274 GLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY 333
G+P+ + L R ++ L+ TIA+ M LA LDPMCG GTI +E + +
Sbjct: 222 GIPLFRLPLANREYIK--TAGLRSTIAWAMASLAEISVSAFVLDPMCGLGTILLEAAKEW 279
Query: 334 PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLP 393
P + DI++ + ANV +G ++ K+ L +V+ L D +++D+P
Sbjct: 280 PEACYWGADISDSQLEGADANV-RTAGLMD---KIELLRASVKALPLPSESFDAVISDIP 335
Query: 394 FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
FGK+ + LL + L E+ +++R G +LL S H
Sbjct: 336 FGKKFKITKDIQLLPDI-LQEMERVLRVG-GTIVLLLSQDLH 375
>gi|347522726|ref|YP_004780296.1| rRNA (guanine-N(2)-)-methyltransferase [Pyrolobus fumarii 1A]
gi|343459608|gb|AEM38044.1| rRNA (guanine-N(2)-)-methyltransferase [Pyrolobus fumarii 1A]
Length = 345
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 15/227 (6%)
Query: 218 LKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWL------VDLDDYDIDINLQIRYNEA 271
+ F V RVG+H TS++ R G + + + VDLD + I + + +++
Sbjct: 95 VSFAVRAERVGEHEYTSLDIARVAGDAVINLVRSVYGERPPVDLDHPHVIIAVDVMFDKL 154
Query: 272 YVGLPVT-QTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
YV + + S HRR V + +LKPT+AY M+ ++ +V +DPMCGGGTIP+E
Sbjct: 155 YVSIELGGDLSWHRRGYRVYEHPASLKPTLAYAMLIISGVRDSEVVMDPMCGGGTIPIEA 214
Query: 330 SLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389
L +C D N + + N + + + + +K V + R++ VD IV
Sbjct: 215 LLFLEDARAICSDFNPLHIRGAKMNAM--AARVYKRMKF--YVHDARRISEVVKSVDRIV 270
Query: 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHL 436
+ P+G R+G+ + LY FL EI ++ R +++T++ H+
Sbjct: 271 LNPPYGIRLGNPRDIRALYTDFLREISRL---DFRRLVMITTEHVHV 314
>gi|363731471|ref|XP_419375.3| PREDICTED: THUMP domain-containing protein 2-like [Gallus gallus]
Length = 494
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 94/394 (23%), Positives = 173/394 (43%), Gaps = 51/394 (12%)
Query: 22 TVVTGFEDVVVEECQEKFGK---DLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIA 78
T G E + E + + G D +L G+VFF + E +KEL+ + + ++
Sbjct: 10 TAGRGLEPFLAREVRARLGATEVDYVL----GKVFFTTAAEPGE-LKELKSGERLFLLLK 64
Query: 79 TFENFGFS-NKGTEEDSGQKDESDLLKDKLKDVATIQNK-VLEIDWKKYMEIWKQITNYN 136
S NKG + ++K + T + K L++ + W+++ ++
Sbjct: 65 KCVPLSVSRNKGK------------MLHEIKSLLTEEPKSCLDV-----IATWRKLRSHE 107
Query: 137 GVLYPSIEQFNKYNDILRHKKSIRNEINI-KKESSCETEPQVNNVQIEKGDLQNQELKEI 195
G Q N+ HK+ EINI K E ++ + + + G +N + E
Sbjct: 108 GK-KDEASQENRSP----HKRKPEEEINIASKRQKTEQVREIASEECQAGAGENCVVSEE 162
Query: 196 DINSMCSSQNQ-------KTNFTNPEENL---LKFRVTCNRVGK--HTVTSMESERAFGG 243
+ + C ++++ +++ P EN FRV+C G +TS E RA G
Sbjct: 163 ESDQDCQAESKASLEGPTRSSIEKPIENEKQNFSFRVSCRCSGAIAKILTSQEIGRAVGI 222
Query: 244 KLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNM 303
L + W DL D++I L + + VG+P+ + L R ++ L+ T+A+ M
Sbjct: 223 ALRKQFGWQADLRAPDLEIFLHLNDIHSVVGIPLFRLPLANREYIK--TAGLRSTVAWAM 280
Query: 304 VRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLN 363
LA G LDPMCG GTI +E + +P + D ++ + N+ + L+
Sbjct: 281 ASLAEISVGAFVLDPMCGLGTILLEAAKEWPEACYWGTDTSDSQLEGASVNI--KAAGLD 338
Query: 364 RELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397
++++ +V+ L D +++D+PFGK+
Sbjct: 339 DKIEL--FKASVKALPLPSESFDAVISDIPFGKK 370
>gi|350582481|ref|XP_003125255.3| PREDICTED: THUMP domain-containing protein 2 isoform 2 [Sus scrofa]
Length = 504
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 94/182 (51%), Gaps = 8/182 (4%)
Query: 218 LKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGL 275
L FRV+C G T T+ E R G L + W VDL + +++I + + + VG+
Sbjct: 206 LTFRVSCRCSGAIAKTFTTQEIGRVIGIALKKQFGWKVDLRNPNLEIFIHLSDIYSVVGI 265
Query: 276 PVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH 335
PV + L R ++ L+ TIA+ M LA G LDPMCG GTI +E + +P
Sbjct: 266 PVFRVPLASRAYIK--TAGLRSTIAWAMASLAEIKAGAFVLDPMCGLGTILLEAAKEWPD 323
Query: 336 TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFG 395
++V D+++ +L N L +G + K+ L +V +L VD I++D+PFG
Sbjct: 324 VYYVGADVSDSQLLGASDN-LKAAGLKD---KIELLKGSVIELPLPSESVDIIISDIPFG 379
Query: 396 KR 397
K+
Sbjct: 380 KK 381
>gi|350582479|ref|XP_003481278.1| PREDICTED: THUMP domain-containing protein 2 [Sus scrofa]
Length = 504
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 94/182 (51%), Gaps = 8/182 (4%)
Query: 218 LKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGL 275
L FRV+C G T T+ E R G L + W VDL + +++I + + + VG+
Sbjct: 206 LTFRVSCRCSGAIAKTFTTQEIGRVIGIALKKQFGWKVDLRNPNLEIFIHLSDIYSVVGI 265
Query: 276 PVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH 335
PV + L R ++ L+ TIA+ M LA G LDPMCG GTI +E + +P
Sbjct: 266 PVFRVPLASRAYIK--TAGLRSTIAWAMASLAEIKAGAFVLDPMCGLGTILLEAAKEWPD 323
Query: 336 TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFG 395
++V D+++ +L N L +G + K+ L +V +L VD I++D+PFG
Sbjct: 324 VYYVGADVSDSQLLGASDN-LKAAGLKD---KIELLKGSVIELPLPSESVDIIISDIPFG 379
Query: 396 KR 397
K+
Sbjct: 380 KK 381
>gi|444731321|gb|ELW71677.1| THUMP domain-containing protein 2 [Tupaia chinensis]
Length = 337
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 133/281 (47%), Gaps = 19/281 (6%)
Query: 122 WKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKK-SIRNEINIKKESSCETEPQVNNV 180
WK +E+ + + + S+++ + N+++ KK I ++ C+ E Q+
Sbjct: 53 WKNLLELDAKKEKLSDTDFKSLKRKLEKNEVIDAKKFKIEQAQEREENRECQLEKQLEE- 111
Query: 181 QIEKGDLQNQE--LKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGK--HTVTSME 236
++E+ D + +E ++ S+ N N E+ L FRV+C G T+
Sbjct: 112 KLEQRDFPAERGMFQEFQNDAENSADNH-----NQED--LTFRVSCRCSGTIGKAFTAQA 164
Query: 237 SERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLK 296
R G L + W +L + D++I + + + VG+PV + L R + L+
Sbjct: 165 VGRVMGIALRKQFGWKANLRNPDLEIFIHLNDIYSVVGIPVFRVPLASRAYI--RTAGLR 222
Query: 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVL 356
TIA+ M LA G LDPMCG GTI +E + +P ++V D+++ ++ N L
Sbjct: 223 STIAWAMASLAEIKAGAFVLDPMCGLGTILLEAAKEWPDVYYVGADVSDSQLIGAGDN-L 281
Query: 357 HNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397
+G + K+ L +V +L VD I++D+PFGK+
Sbjct: 282 EAAGLKD---KIELLKVSVIELPLPSESVDVIISDIPFGKK 319
>gi|426226422|ref|XP_004007342.1| PREDICTED: THUMP domain-containing protein 2 [Ovis aries]
Length = 562
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 154/328 (46%), Gaps = 22/328 (6%)
Query: 22 TVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIATFE 81
T G E ++ E +E+ + S G+VFF D+ +K+L+ + + +I
Sbjct: 21 TAGRGLEPFLMREVRERLAATQVEYIS-GKVFFTA-CSDLNMLKQLKSAERLFLLIKKQL 78
Query: 82 NFGFSN--KGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNGVL 139
F S+ KG + Q+ +D + L ++ +N +LE+D KK +++++ N
Sbjct: 79 PFPVSSISKGKIFNELQRLINDDPESWLNAISIWKN-LLELDAKK-----EKLSHKNAN- 131
Query: 140 YPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQELKEIDINS 199
+++ +D K I++ C+ E Q+ +E+G+ +E K ++ +
Sbjct: 132 --PLKRKVGEDDTAAKKLKTEQIQEIQETKECQLEKQIEEKLLEQGNFITEEGKFQELQN 189
Query: 200 MCSSQNQKTNFTNPEENLLKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDD 257
+ N TN L FRV+C G T+T+ E R G L + W +L +
Sbjct: 190 DVTEAADTRNQTN-----LTFRVSCRCSGAIAKTLTAQEVGRVIGIALMKQFGWKANLRN 244
Query: 258 YDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLD 317
D++I + + + +G+PV + L R ++ ++ TIA+ M LA G V LD
Sbjct: 245 PDLEIFIHLSDIYSVLGIPVFRVPLACRAYIK--TAGMRSTIAWAMASLAEIKAGAVVLD 302
Query: 318 PMCGGGTIPVECSLSYPHTFFVCGDINE 345
PMCG GTI +E + +P ++V D+++
Sbjct: 303 PMCGLGTILLEAAKEWPDVYYVGADVSD 330
>gi|348574634|ref|XP_003473095.1| PREDICTED: THUMP domain-containing protein 2-like [Cavia porcellus]
Length = 501
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 10/183 (5%)
Query: 218 LKFRVTC---NRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVG 274
L FRV+C +GK T+ E R G + + W DL + D++I + + VG
Sbjct: 203 LTFRVSCRCSGSIGK-VFTAQEIGRVIGIAVMKQFGWKADLRNPDVEIFVHLNDIYTVVG 261
Query: 275 LPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP 334
+PV + L R + L+ TIA+ M LA G LDPMCG GTI +E + +P
Sbjct: 262 IPVFRVPLASRTYI--RTAGLRSTIAWAMASLAEIKVGTFVLDPMCGLGTILLEAAKEWP 319
Query: 335 HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPF 394
++V D+++ +L N+ S LN ++++ L +V +L VD I++D+PF
Sbjct: 320 EGYYVGADVSDSQLLGASDNL--KSAGLNDKIEL--LKVSVIELPLPSESVDIIISDIPF 375
Query: 395 GKR 397
GK+
Sbjct: 376 GKK 378
>gi|73980770|ref|XP_540159.2| PREDICTED: THUMP domain-containing protein 2 [Canis lupus
familiaris]
Length = 502
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/385 (27%), Positives = 176/385 (45%), Gaps = 35/385 (9%)
Query: 22 TVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIA-TF 80
T G E ++ E + + + S G+VFF D+ +K+L+ + + +I F
Sbjct: 21 TAGRGLEPFLMREVRARLAATQVEYIS-GKVFFTT-CSDLNMLKKLKSAERLFLLIKKQF 78
Query: 81 E-NFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNGVL 139
N NKG + Q +D + L ++ +N +LE+D KK K L
Sbjct: 79 PLNVPSVNKGKIFNEMQNLVNDDPESWLNAISIWKN-LLELDTKK----GKLSQRDANPL 133
Query: 140 YPSIEQFNKYNDILRHKKSIRNEINIKKES-SCETEPQVNNVQIEKGDL----QNQELKE 194
+E+ NDI+ KK ++ +ES C+ E ++ E+ L ++QE +
Sbjct: 134 KRKVEE----NDIINPKKLKTEQMQELQESRECQLEKEIEEETPEQDFLTKREKSQEAFQ 189
Query: 195 IDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWL 252
D+ +QNQK L FRV+C G T T+ E R G + + W
Sbjct: 190 NDVVKAGDTQNQKD---------LTFRVSCRCSGAIAKTFTAQEVGRVIGIAVMKQFGWK 240
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPG 312
DL + +++I + + + VG+PV + L R ++ L+ TIA+ M LA G
Sbjct: 241 ADLRNPNLEIFIHLNDVYSVVGIPVFRVPLASRAYIK--TAGLRSTIAWAMASLAEIKAG 298
Query: 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372
LDPMCG GTI +E + +P ++V D ++ +L N L +G + K+ L
Sbjct: 299 AFVLDPMCGLGTILLEAAKEWPDVYYVGADASDSQLLGACDN-LKAAGLKD---KIELLK 354
Query: 373 CNVRQLCFKPACVDGIVTDLPFGKR 397
+V +L VD I++D+PFGK+
Sbjct: 355 VSVIELPLPSESVDIIISDIPFGKK 379
>gi|344253561|gb|EGW09665.1| THUMP domain-containing protein 2 [Cricetulus griseus]
Length = 470
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 154/332 (46%), Gaps = 36/332 (10%)
Query: 122 WKKYMEIWKQI----TNYNGVLYPSIEQFNKY---NDILRHKKSIRNEINIKKESSCETE 174
W K + +WK++ T V + N+I+ KK EI + +ES E +
Sbjct: 45 WLKAISLWKELLECDTKREKVSQRDANPLKRKVGENEIVIAKKLKVEEIQMVEESHREDQ 104
Query: 175 -PQVNNVQIEKGDL--QNQELKEIDINSMCSSQNQKTNF--TNPEENL--LKFRVTCNRV 227
++ +E+G+ Q + L+E Q + + T ENL L FRV+C
Sbjct: 105 RDRLTEYYLEQGNAVTQTEALQE---------QGPQNDLVKTAGTENLEDLTFRVSCRCS 155
Query: 228 GK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRR 285
G T+ E R G L + W +L + ++I + + + VG+P+ + L R
Sbjct: 156 GNIVKAFTAQEVGRVVGIALMRKFGWKANLRNPYLEIFMHLSDAYSVVGIPLFRVPLASR 215
Query: 286 NIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINE 345
++ L+ TIA+ M +A G + LDPMCG GTI VE + +P +++ D+++
Sbjct: 216 TYIQ--TAGLRSTIAWAMASIAEIKAGALVLDPMCGLGTILVEAAEEWPDVYYMGADVSD 273
Query: 346 KLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNF 405
+L N L +G + K+ L +V +L VD I++D+PFGK+ +
Sbjct: 274 SQLLGACDN-LKAAGLAD---KIDLLQGSVTELPLPSQSVDVIISDIPFGKKFKLGKD-- 327
Query: 406 LLYRLFLIEIGKIVRPQIGRAILLTSD-RKHL 436
+ L E+ +++R +LL+ D R+HL
Sbjct: 328 --IKSILQEMERVLRVGGTMVLLLSEDHRRHL 357
>gi|194389866|dbj|BAG60449.1| unnamed protein product [Homo sapiens]
Length = 394
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 133/295 (45%), Gaps = 46/295 (15%)
Query: 150 NDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDL-------QNQELKEIDINSMCS 202
N+I+ K I I++ C+ E Q+ +E+ D Q +E + DI
Sbjct: 47 NEIIAKKLKIEQMQKIEENWDCQLEKQIKEETLEQRDFTTKSEKFQEEEFQN-DIEKAID 105
Query: 203 SQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDI 262
+ NQ N L FR VGK V + + FG W DL + ++I
Sbjct: 106 THNQ---------NDLTFR----EVGK--VIGIAIMKHFG--------WKADLRNPQLEI 142
Query: 263 NLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGG 322
+ + + VG+PV + SL R ++ L+ TIA+ M LA G LDPMCG
Sbjct: 143 FIHLNDIYSVVGIPVFRVSLASRAYIK--TAGLRSTIAWAMASLADIKAGAFVLDPMCGL 200
Query: 323 GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP 382
GTI +E + +P ++V D+++ +L T N L +G E K+ L +V +L
Sbjct: 201 GTILLEAAKEWPDVYYVGADVSDSQLLGTWDN-LKAAG---LEDKIELLKISVIELPLPS 256
Query: 383 ACVDGIVTDLPFGK--RVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
VD I++D+PFGK ++G + L ++ +G G +LL S+ H
Sbjct: 257 ESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVG-------GTIVLLLSEDHH 304
>gi|171186165|ref|YP_001795084.1| putative RNA methylase [Pyrobaculum neutrophilum V24Sta]
gi|170935377|gb|ACB40638.1| putative RNA methylase [Pyrobaculum neutrophilum V24Sta]
Length = 333
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 100/202 (49%), Gaps = 14/202 (6%)
Query: 222 VTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTS 281
+ C RVG+H TS + ER G L + + ++ L D D++IN+ + +N V + V + S
Sbjct: 95 IRCERVGQHPFTSRDVEREVGRWLKERGY-VISLVDPDVEINVDVVHNYVTVWITVAKKS 153
Query: 282 LHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVC 340
L R + + +L P IA+ M RLA P PG+ D CGGGTI E + P ++C
Sbjct: 154 LKDRPWRAYEHYASLNPIIAHAMARLAKPAPGETICDLTCGGGTIAAEAAEYAPWARYIC 213
Query: 341 GDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKPACVDGIVTDLPFGKRV 398
DI+ K ++ + N R +V L + +L +P C D + + P+G R+
Sbjct: 214 VDISLK-------HIKGAALNTARYPQVDLLWFDSTKLHRAVRPIC-DKYIFNPPYGFRI 265
Query: 399 GSKSNNFLLYRLFLIEIGKIVR 420
K LYRL + K+ R
Sbjct: 266 PGKIGR--LYRLLGKAMRKLTR 285
>gi|374852065|dbj|BAL55007.1| RNA methylase [uncultured planctomycete]
Length = 358
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 124/260 (47%), Gaps = 18/260 (6%)
Query: 220 FRVTCNRVGKHTVTSMES----ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGL 275
+ + C G+H +++ R GK+ + W +D ++I L IR A GL
Sbjct: 106 YHLVCQMFGEHGYRRVDALQALARGLRGKIPSS--WKAVAEDAAVEIWLTIRGKTAVCGL 163
Query: 276 PVTQTSL-HRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP 334
++ ++ HR VE +L+P A +V LA P P +V LDPMCG GTI E
Sbjct: 164 RLSGATMRHREYKVEHVPASLRPVAAAALVWLAQPRPEEVLLDPMCGAGTILAERLAWER 223
Query: 335 HTFFVCGDINEKLVLKTQANVLH-NSGNLNRELKVSPLV-CNVRQLCFKPACVDGIVTDL 392
+ GD + + AN+ + N +E PLV + R+L A V I +
Sbjct: 224 RGRILGGDRDWAALHAACANLEYFRKENRAKESLYWPLVRWDARRLPLPDASVAVIACNP 283
Query: 393 PFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQA---LHITSALWKC 449
PFGK++ + LLYR + E ++++PQ GRA ++ ++ + LH W+C
Sbjct: 284 PFGKQLSPGEDIGLLYRELVPEWHRVLQPQ-GRAAIVVANWSAFARPAENLH-----WRC 337
Query: 450 RKQIKINMSGMKSFVFILNR 469
R++ ++ + G + ++ + R
Sbjct: 338 RRRFRVLLLGQEVWLALWQR 357
>gi|148232816|ref|NP_001086861.1| THUMP domain containing 2 [Xenopus laevis]
gi|50415488|gb|AAH77569.1| Thumpd2-prov protein [Xenopus laevis]
Length = 469
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 126/275 (45%), Gaps = 15/275 (5%)
Query: 164 NIKKESSCETEPQVN-NVQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRV 222
N ++ C + Q + N E D + KE+D +++ Q + T+ + FRV
Sbjct: 127 NTARDRVCLFDDQTHKNNMSETEDQNTMDSKELD-----ATEQQLLSKTHKNTTPITFRV 181
Query: 223 TCNRVGKHT--VTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQT 280
+C G T+ E G + + W DL +++ + + + VG PVT+
Sbjct: 182 SCRCSGASAKVFTAQEVGAVIGASIIKQFGWKPDLRTPSLEVFVHLNDQYSVVGFPVTRQ 241
Query: 281 SLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVC 340
L R+ + T L+ T A+ M LA G + LDPMCG GTI +E + +P FV
Sbjct: 242 PLASRDYIRN--TGLRSTTAWAMGALAELHVGALVLDPMCGVGTILLEAAKEWPFGHFVG 299
Query: 341 GDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGS 400
D N+ + +NV L +++ L +V L F +D +++D+PFG++ S
Sbjct: 300 VDNNDSQLKSAVSNV--KGAGLGGSIEL--LKGSVLDLPFVSESIDAVISDIPFGRKFTS 355
Query: 401 KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
N L + E+ ++VR + G +LL S H
Sbjct: 356 SRNMKDLLPDIIREMQRVVRVE-GIIVLLLSQCLH 389
>gi|224286163|gb|ACN40792.1| unknown [Picea sitchensis]
Length = 345
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 109/211 (51%), Gaps = 16/211 (7%)
Query: 282 LHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVC 340
L+R+ +VE T+LKP+ A+++++LA PG + +DPMCG GTIP+E + ++ +
Sbjct: 135 LYRKVLVE---TSLKPSTAFSLLQLAEVQPGHLIIDPMCGCGTIPLEAAENFSGQVMCLG 191
Query: 341 GDINEKLVLKTQANVLHNSGNLNRELKVSP--LVCNVRQLCFKPACVDGIVTDLPFGKRV 398
GD +K V ++N +++LK S L + L + CVD ++ D+PFG R
Sbjct: 192 GDTAQKAVAAAKSN--------SQDLKESSDVLHWDATHLPLRTGCVDRVICDMPFGVRC 243
Query: 399 GSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITS-ALWKCRKQIKINM 457
G+ L L E+ +++ P+ G A+L+ K + + + + K + + M
Sbjct: 244 GNIRVRQWLCPKVLKEMIRVLAPETGLAVLMVQG-KFMRKEIEVNQKQFLKLVNHLNVQM 302
Query: 458 SGMKSFVFILNRTADLFDYAIHGLKEKHKGK 488
G++ VF+L RT++ + K K K
Sbjct: 303 EGIRVEVFVLQRTSEPTPTLVSSCKIKFDAK 333
>gi|168703158|ref|ZP_02735435.1| putative RNA methylase [Gemmata obscuriglobus UQM 2246]
Length = 368
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 120/261 (45%), Gaps = 23/261 (8%)
Query: 220 FRVTCNRVGKHTVTSMESERAF----GGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGL 275
+ + C G+H ++ AF GK+ + W ++ ++I L I A G+
Sbjct: 118 YHLVCQMQGEHGFRRADARAAFIEGLAGKI--PHGWHYSNENAWLEIWLTIYSKTAVCGV 175
Query: 276 PVT-QTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC----- 329
++ +T HR ++ +L+PT+A MVRLA PG LDP CG GTI E
Sbjct: 176 RLSDRTMRHRAYKLDHVAASLRPTVAAAMVRLAGIGPGMTVLDPFCGAGTILAEALDVAE 235
Query: 330 -SLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388
+ GDI+ V T N+ H K + + L + A VD I
Sbjct: 236 KRSRGGEIRVIGGDIDPNAVFVTSQNLEHVG-------KAALARWDATALPLETASVDRI 288
Query: 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWK 448
V++ PFGK++ S LY +E+ ++++P GRA+LL + + L + L W+
Sbjct: 289 VSNPPFGKQLSSIEQIGPLYEAAGVEMDRVLKPG-GRAVLLAMEVEGLKRVLQ--GCRWQ 345
Query: 449 CRKQIKINMSGMKSFVFILNR 469
+Q ++ + G+ + + + N+
Sbjct: 346 QVRQTRVRLLGLPAVLTVWNK 366
>gi|119871922|ref|YP_929929.1| RNA methylase [Pyrobaculum islandicum DSM 4184]
gi|119673330|gb|ABL87586.1| putative RNA methylase [Pyrobaculum islandicum DSM 4184]
Length = 334
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 99/202 (49%), Gaps = 14/202 (6%)
Query: 222 VTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTS 281
+ C RVG+H TS + ER G L + + ++ L D D++IN+ + +N V + V + S
Sbjct: 95 IRCERVGQHPFTSRDVEREVGRWLKERGY-VISLVDPDVEINVDVVHNYVTVWITVAKKS 153
Query: 282 LHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVC 340
L R + + +L P IA+ M RLA P PG+ D CGGGTI E + P ++C
Sbjct: 154 LKDRPWRAYEHYASLNPIIAHAMARLAKPAPGETICDLTCGGGTIAAEAAEYAPWARYIC 213
Query: 341 GDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKPACVDGIVTDLPFGKRV 398
DI+ K ++ + N R +V L + +L +P C D + + P+G R+
Sbjct: 214 VDISLK-------HIKGAALNTARYPQVDLLWFDSTKLHRAIRPIC-DKYIFNPPYGFRI 265
Query: 399 GSKSNNFLLYRLFLIEIGKIVR 420
K LY L + K+ R
Sbjct: 266 PGKIGK--LYHLLGKAMRKLTR 285
>gi|326915084|ref|XP_003203851.1| PREDICTED: THUMP domain-containing protein 2-like [Meleagris
gallopavo]
Length = 516
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 119/256 (46%), Gaps = 20/256 (7%)
Query: 155 HKKSIRNEINI-KKESSCETEPQVNNVQIEKGDLQNQELKEIDINSMCSSQNQ------- 206
HK+ EINI K E ++ + + + G +N + E + + C ++++
Sbjct: 145 HKRK-PEEINIASKRQKTEQVREIVSEECQAGAGENCVVSEEESDQDCQTESKASLEGPP 203
Query: 207 KTNFTNPEENL---LKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDID 261
K++ P EN FRV+C G +TS E RA G L + W DL D++
Sbjct: 204 KSSIEKPTENEKQNFSFRVSCRCSGAIAKILTSQEIGRAVGIALRKQFGWQADLRAPDLE 263
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCG 321
I L + + VG+P+ + L R + L+ T+A+ M LA G LDPMCG
Sbjct: 264 IFLHLNDIHSVVGIPLFRLPLANREYI--RTAGLRSTVAWAMASLAEISVGAFVLDPMCG 321
Query: 322 GGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381
GTI +E + +P + D ++ + N+ + L+ ++++ +V+ L
Sbjct: 322 LGTILLEAAKEWPEACYWGTDTSDAQLEGASVNI--KTAGLDDKIEL--FKASVKALPLP 377
Query: 382 PACVDGIVTDLPFGKR 397
D +++D+PFGK+
Sbjct: 378 SESFDAVISDIPFGKK 393
>gi|426335325|ref|XP_004029178.1| PREDICTED: THUMP domain-containing protein 2 [Gorilla gorilla
gorilla]
Length = 503
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 132/297 (44%), Gaps = 34/297 (11%)
Query: 150 NDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDL-------QNQELKEIDINSMCS 202
N+I+ K I I++ C+ E Q+ +E+ D Q +E + DI
Sbjct: 140 NEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRDFTTKSEKFQEEEFQN-DIEKAID 198
Query: 203 SQNQKTNFTNPEENLLKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDI 260
+ NQ N L FRV+C G + E + G + + W DL + +
Sbjct: 199 THNQ---------NDLTFRVSCRCSGTIGKAFAAQEVGKVIGIAIMKHFGWKADLRNPQL 249
Query: 261 DINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
++ + + + + + + SL R ++ L+ TIA+ M LA G LDPMC
Sbjct: 250 EVMIHLIEAVSVMNSFLCRVSLASRAYIK--TAGLRSTIAWAMASLADIKAGAFVLDPMC 307
Query: 321 GGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380
G GTI +E + +P ++V D+++ +L T N L +G E K+ L +V +L
Sbjct: 308 GLGTILLEAAKEWPDVYYVGADVSDSQLLGTWDN-LKAAG---LEDKIELLKISVIELPL 363
Query: 381 KPACVDGIVTDLPFGK--RVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
VD I++D+PFGK ++G + L ++ +G G +LL S+ H
Sbjct: 364 PSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVG-------GTIVLLLSEDHH 413
>gi|350591410|ref|XP_003358563.2| PREDICTED: SET domain-containing protein 5-like [Sus scrofa]
Length = 372
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 75/132 (56%)
Query: 343 INEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKS 402
++ K +L+ + + L+ L + + ++ +L + VD IVTD+PFGKR+GSK
Sbjct: 228 VDLKFILQMSIHHVFTLYKLSWGLPIDTVQWDICKLPLRTGSVDIIVTDMPFGKRMGSKK 287
Query: 403 NNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKS 462
N+ LY L E+ ++ RP GRA+LLT D+K +AL +W+ + +N+ G+ +
Sbjct: 288 RNWDLYPACLREMSRVCRPGTGRAVLLTQDKKCFTKALSAMGHVWRKVHTVWVNIGGLHA 347
Query: 463 FVFILNRTADLF 474
V++L RT F
Sbjct: 348 AVYLLKRTPQTF 359
>gi|354489890|ref|XP_003507093.1| PREDICTED: LOW QUALITY PROTEIN: THUMP domain-containing protein
2-like [Cricetulus griseus]
Length = 598
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 154/332 (46%), Gaps = 36/332 (10%)
Query: 122 WKKYMEIWKQI----TNYNGVLYPSIEQFNKY---NDILRHKKSIRNEINIKKESSCETE 174
W K + +WK++ T V + N+I+ KK EI + +ES E +
Sbjct: 153 WLKAISLWKELLECDTKREKVSQRDANPLKRKVGENEIVIAKKLKVEEIQMVEESHREDQ 212
Query: 175 -PQVNNVQIEKGDL--QNQELKEIDINSMCSSQNQKTNF--TNPEENL--LKFRVTCNRV 227
++ +E+G+ Q + L+E Q + + T ENL L FRV+C
Sbjct: 213 RDRLTEYYLEQGNAVTQTEALQE---------QGPQNDLVKTAGTENLEDLTFRVSCRCS 263
Query: 228 GK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRR 285
G T+ E R G L + W +L + ++I + + + VG+P+ + L R
Sbjct: 264 GNIVKAFTAQEVGRVVGIALMRKFGWKANLRNPYLEIFMHLSDAYSVVGIPLFRVPLASR 323
Query: 286 NIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINE 345
++ L+ TIA+ M +A G + LDPMCG GTI VE + +P +++ D+++
Sbjct: 324 TYIQ--TAGLRSTIAWAMASIAEIKAGALVLDPMCGLGTILVEAAEEWPDVYYMGADVSD 381
Query: 346 KLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNF 405
+L N L +G + K+ L +V +L VD I++D+PFGK+ +
Sbjct: 382 SQLLGACDN-LKAAGLAD---KIDLLQGSVTELPLPSQSVDVIISDIPFGKKFKLGKD-- 435
Query: 406 LLYRLFLIEIGKIVRPQIGRAILLTSD-RKHL 436
+ L E+ +++R +LL+ D R+HL
Sbjct: 436 --IKSILQEMERVLRVGGTMVLLLSEDHRRHL 465
>gi|307719841|ref|YP_003875373.1| hypothetical protein STHERM_c21710 [Spirochaeta thermophila DSM
6192]
gi|306533566|gb|ADN03100.1| hypothetical protein STHERM_c21710 [Spirochaeta thermophila DSM
6192]
Length = 353
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 113/234 (48%), Gaps = 13/234 (5%)
Query: 204 QNQKTNFTNPE-ENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDI 262
Q T + P E FR+ RVG H T M+ ERA G L+ TY V+L ++ I
Sbjct: 87 QEALTTLSFPHLEEASSFRILSERVGDHPFTHMDIERAAGEILHTTYRCPVNLTSPEVTI 146
Query: 263 NLQIRYNEAYVGLPVTQTSLHRRNIVEFNI-TTLKPTIAYNMVRLASPI--PGDVFLDPM 319
+ + VG +++ + R ++ +LKP +AY ++ L+ PG + LDP
Sbjct: 147 CVDLYDRHVLVGELLSRPRFYTRYEKPYHPRVSLKPPLAYGLLHLSGIFNDPGPL-LDPF 205
Query: 320 CGGGTIPVECSLSYPHTFFVCG-DINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378
CG GTI +E + P +CG DI+ + T N L G E KV ++ + R+L
Sbjct: 206 CGAGTILLEAADLLPEGLPICGLDISWRAFSGTARN-LEAEGF---ERKVRLVLGDARRL 261
Query: 379 C--FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430
F P IVTD PFG ++G + + L+ FL E +++P G + LT
Sbjct: 262 SSYFPPESFQYIVTDPPFGVKLGRRLDFEDLFSAFLEEASLVLKPG-GTMVFLT 314
>gi|428777215|ref|YP_007169002.1| RNA methylase [Halothece sp. PCC 7418]
gi|428691494|gb|AFZ44788.1| RNA methylase [Halothece sp. PCC 7418]
Length = 354
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 122/261 (46%), Gaps = 9/261 (3%)
Query: 213 PEENLLK-FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEA 271
PE + K FRVT R GKH +M+ +R G L Y V+L D+++ + +
Sbjct: 96 PEMDTAKTFRVTTQRNGKHEFRAMDVQRIAGSALIQRYGKKVNLAQPDVNVRVDLYDRLC 155
Query: 272 YVGLPVTQTSL-HRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECS 330
V + TQ +L R+ V LK T+AY M++L LDP CG GTI +E +
Sbjct: 156 LVSIQETQEALDQRQKKVWRPRIALKTTMAYAMLQLCELEGTARLLDPFCGSGTILMEAA 215
Query: 331 LSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--FKPACVDGI 388
+P D + V + N+ + + + ++++ + R L + D I
Sbjct: 216 TLFPDLDIYGRDRWAEAVTGVKENI--RAAHFSHQIQIQE--GDARDLAQDYPAGFFDAI 271
Query: 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWK 448
VT+ P+G +GSK N LY+ FL KI++P+ GR ++L + + + ++
Sbjct: 272 VTNPPYGVHLGSKINFDRLYQKFLYGAEKILQPE-GRLVVLVGKGRGAFKKIISQRETFQ 330
Query: 449 CRKQIKINMSGMKSFVFILNR 469
R++ +N + + I +R
Sbjct: 331 IREERLVNTGELYPHLLICDR 351
>gi|374326996|ref|YP_005085196.1| putative RNA methylase [Pyrobaculum sp. 1860]
gi|356642265|gb|AET32944.1| putative RNA methylase [Pyrobaculum sp. 1860]
Length = 330
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 95/200 (47%), Gaps = 14/200 (7%)
Query: 222 VTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTS 281
V C RVG+H TS + ER G L D F + L D D++IN+ + + V + V + S
Sbjct: 95 VRCERVGEHGFTSRDVEREVGRWLKDRGF-TISLVDPDVEINVDVVEHYVSVWVTVAKRS 153
Query: 282 LHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVC 340
L R V + +L P IA M RLA P PG+ D CGGGT+ E + YPH ++C
Sbjct: 154 LKDRPWRVYQHYASLNPIIANAMARLAKPQPGETICDLTCGGGTVVAEAAELYPHARYLC 213
Query: 341 GDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGS 400
DI+ + V N H + + + R +C D + + P+G R+
Sbjct: 214 IDISLRHVKGALVNTAHLPQVDHIWFDSTKVYRAARPIC------DKYIFNPPYGFRIPG 267
Query: 401 KSNNFLLYRLFLIEIGKIVR 420
+ LYRL +GK +R
Sbjct: 268 RIGR--LYRL----LGKAMR 281
>gi|432114060|gb|ELK36107.1| THUMP domain-containing protein 2 [Myotis davidii]
Length = 419
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 110/251 (43%), Gaps = 29/251 (11%)
Query: 122 WKKYMEIWKQITNYN--------GVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCET 173
W + IWK + + G P + + + I+ K ++ C+
Sbjct: 46 WLNAISIWKNLLELDTKKKKLSHGDANPLKRKMGENDSIIAKKLKAEQMQETQENRECQL 105
Query: 174 EPQVNNVQIEKGDL-------QNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNR 226
E Q+ +E+GD Q +EL+ D+ + NQ N L FRV+C
Sbjct: 106 EKQIEEETLERGDFLTEREKCQEEELQN-DVAKAGGTHNQ---------NDLTFRVSCRC 155
Query: 227 VGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHR 284
G T+++ E+ R G L + W DL + +++I + + + +G+PV + L
Sbjct: 156 GGAIAKTLSAQEAGRIIGIALMKQFGWKADLRNPNLEIFIHLNDIYSVMGIPVFRVPLAS 215
Query: 285 RNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDIN 344
R + L+ TIA+ M +A G LDPMCG GTI +E + +P ++V D++
Sbjct: 216 RAYI--RTAGLRSTIAWAMASVAEIKAGAFVLDPMCGLGTILLEAAKEWPDVYYVGADVS 273
Query: 345 EKLVLKTQANV 355
+ +L N+
Sbjct: 274 DSQLLGACDNL 284
>gi|119719469|ref|YP_919964.1| putative RNA methylase [Thermofilum pendens Hrk 5]
gi|119524589|gb|ABL77961.1| putative RNA methylase [Thermofilum pendens Hrk 5]
Length = 336
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 116/253 (45%), Gaps = 14/253 (5%)
Query: 220 FRVTCNRVGKHT-VTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVT 278
F V R+ K +TS+E G + V LD DI + ++ G+ +
Sbjct: 94 FSVHAERITKDIDLTSLEIAAKIGEMVKTRLNLDVSLDFPDIPVYVEYEKGVYRYGVDLC 153
Query: 279 -QTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHT 336
SL R F + + L P IAY + R G DP CG GTIP+EC YP
Sbjct: 154 FHRSLRDRPYRRFIHRSALNPLIAYALCRAVRG--GKSLWDPFCGSGTIPLECLEVYPWA 211
Query: 337 FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK 396
VC D+N + + A L NS + +EL + +V ++R + +D +VT+ PFG
Sbjct: 212 RAVCSDVNAEFI----AGALQNSLAVGKELDL--VVSDIRSAPLRSGSIDAVVTNPPFGI 265
Query: 397 RVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKIN 456
R + +Y E +++ Q GR +LT RK L+++L + K + ++N
Sbjct: 266 REKAVGGLRKVYEALFTEASRVL-VQGGRLAVLTPHRK-LVESLAQKHSFLKV-GEWRLN 322
Query: 457 MSGMKSFVFILNR 469
G+ S++ + +R
Sbjct: 323 EGGLLSYMLLYSR 335
>gi|315501644|ref|YP_004080531.1| RNA methylase [Micromonospora sp. L5]
gi|315408263|gb|ADU06380.1| RNA methylase [Micromonospora sp. L5]
Length = 356
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)
Query: 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVL 356
P I MVRLA G LDP CG GT+ V + GD+ + NV
Sbjct: 183 PVIGAVMVRLAKIEDGQTVLDPFCGAGTLLVLAGEMAKPGLLIGGDVQSSWARAARTNV- 241
Query: 357 HNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIG 416
H+ G L S L + ++L F +D I+ ++PFGKRVG+ +N +Y L EI
Sbjct: 242 HSRG-----LDGSLLNVDAQRLPFPNGSIDRIIANMPFGKRVGTHKHNIQMYPAALGEIS 296
Query: 417 KIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFIL 467
+++ P+ GRA+LLT D++ + + T L + K+I + G +++
Sbjct: 297 RVMTPR-GRAVLLTEDKRLFRETVQRTP-LLRVIKEILLERGGAHPSAYVV 345
>gi|383790503|ref|YP_005475077.1| putative N6-adenine-specific DNA methylase [Spirochaeta africana
DSM 8902]
gi|383107037|gb|AFG37370.1| putative N6-adenine-specific DNA methylase [Spirochaeta africana
DSM 8902]
Length = 364
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 113/265 (42%), Gaps = 18/265 (6%)
Query: 219 KFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVT 278
FRV R G H S + R G + V LD+ ++ + + IR + A++G+ +
Sbjct: 103 SFRVCTERFGDHPFASGDVNRRVGAVIGARTPARVQLDNPELTVRVDIRNDTAWMGIQLH 162
Query: 279 QTSLHRRNIVEFNI-TTLKPTIAYNMVRL-------------ASPIPGDVFLDPMCGGGT 324
SL +R F TL+ TIA M+++ A P G +DP CG GT
Sbjct: 163 PESLDKRYRWAFRPRVTLRTTIAAGMLQMGMRYLRDYESQADAHPA-GLTVVDPCCGSGT 221
Query: 325 IPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPAC 384
I +E + P + GDI+E V + N L + + L + +
Sbjct: 222 ILLEAAAMLPDATVLGGDIDEAAVAGSIENAL--AAGVAPRLDIRTWDATHLEEHLAAGS 279
Query: 385 VDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITS 444
VD +VT+ PFG R+G++ N Y L +I+RP G +LL ++ L L
Sbjct: 280 VDLVVTNPPFGVRLGARLNFRDFYLQLLQAAARILRPG-GGLVLLAGKKRGLFNYLLRDL 338
Query: 445 ALWKCRKQIKINMSGMKSFVFILNR 469
W+ I + G +F+L R
Sbjct: 339 PEWRQMDARVIEIGGSFPGLFVLQR 363
>gi|14600803|ref|NP_147325.1| methyltransferase [Aeropyrum pernix K1]
gi|5104210|dbj|BAA79525.1| putative methyltransferase [Aeropyrum pernix K1]
Length = 354
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQ 352
LK ++AY M+RLA GD LDPMCGGGT+ VE +L + + C D+N + +
Sbjct: 182 AALKASLAYVMLRLAGARDGDTILDPMCGGGTVAVEAALLFETSRVYCVDLNPRHTRGAR 241
Query: 353 ANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFL 412
N S + ++V + VD IV++ P+G R+G + +LYR F+
Sbjct: 242 LNA--ESARVGGRVEVYTWDARMLHELLGEDSVDRIVSNPPYGIRLGDPVDVRILYREFM 299
Query: 413 IEIGKIVRPQIGRAILLTSDRKHLIQA 439
+++R GRA ++T++ K L+ A
Sbjct: 300 PSAARVLRSG-GRAAIITAETKALVAA 325
>gi|305663675|ref|YP_003859963.1| putative RNA methylase [Ignisphaera aggregans DSM 17230]
gi|304378244|gb|ADM28083.1| putative RNA methylase [Ignisphaera aggregans DSM 17230]
Length = 406
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 12/162 (7%)
Query: 213 PEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYF------WLVDLDDYDIDINLQI 266
P E+ F + R+G+HT TS++ R G + D+Y V+LD+ DI+I ++
Sbjct: 107 PHES---FAIRSERIGQHTFTSIDIARVAGQAVIDSYMASRGVRLKVNLDNPDIEIYTEL 163
Query: 267 RYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIP 326
+ VGL +T+ SLH RN + ++ +LK +IA M+R A P +DPMCG GTIP
Sbjct: 164 NNDRLLVGLALTRRSLHIRNRLFYHPASLKSSIAAAMLRYAEWRPEIGIVDPMCGSGTIP 223
Query: 327 VECSLSYPHTFFVCGDINE---KLVLKTQANVLHNSGNLNRE 365
+E +L C +IN K++ + A V+ + L R+
Sbjct: 224 IEAALIAKGVEVPCININAINIKVLERIHAEVVEHIKRLCRD 265
>gi|47224683|emb|CAG00277.1| unnamed protein product [Tetraodon nigroviridis]
Length = 198
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 8/185 (4%)
Query: 236 ESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTL 295
+ R G L+ W VDL + +++N+ + + +G+P+T+ L R ++ T L
Sbjct: 5 DVSRVIGVGLSRLLGWKVDLKNPQVEVNIHLSDDYCLMGIPLTRLPLANRYYIKS--TGL 62
Query: 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANV 355
+ TIA+ + LA PG LDPMCG GTI +E + +P F+ DI++ + K N+
Sbjct: 63 RSTIAWAIASLAQIQPGFCVLDPMCGVGTILIEAAQEHPDALFIGLDIDDGQIQKANENI 122
Query: 356 -LHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIE 414
G+ +K S + + A VD +V DLPFG++ G++ + L L E
Sbjct: 123 NFAEVGDRIHVMKASSMT-----IPLPDAKVDVVVCDLPFGRKFGTRVDMAAKLPLILTE 177
Query: 415 IGKIV 419
+ + V
Sbjct: 178 MERFV 182
>gi|163914845|ref|NP_001106429.1| THUMP domain containing 2 [Xenopus (Silurana) tropicalis]
gi|157423637|gb|AAI53708.1| LOC100127599 protein [Xenopus (Silurana) tropicalis]
Length = 478
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 124/256 (48%), Gaps = 15/256 (5%)
Query: 188 QNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGK--HTVTSMESERAFGGKL 245
Q ++ +DI + +++ Q + + + FRV+C G T E GG +
Sbjct: 158 QAEDQNLMDIEELNATEQQLLPKPHMNTHPITFRVSCRCSGATAKVFTPQEVGAVIGGSI 217
Query: 246 NDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVR 305
+ W DL +++ + + + VG P+++ L +R+ + T L+ T A+ M
Sbjct: 218 IKQFGWKPDLRMPSLEVFVHLNDLYSVVGFPISRQPLAKRDYIRN--TGLRSTTAWAMGT 275
Query: 306 LASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRE 365
LA G + LDPMCG GTI +E + +P F+ D N L LK+ + + +G L+
Sbjct: 276 LAELHVGALVLDPMCGVGTILLEAAKEWPFGHFLGVD-NNDLQLKSAVSNVKGAG-LDGA 333
Query: 366 LKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGR 425
+++ L +V L F +D ++ D+PFG++ S N L + E+ ++VR +G
Sbjct: 334 IEL--LKGSVLDLPFVSESMDAVICDIPFGRKFTSSKNMKDLLPDIIREMQRVVR--VGG 389
Query: 426 AILLTSDRKHLIQALH 441
AI+L L Q LH
Sbjct: 390 AIVLL-----LSQCLH 400
>gi|337284516|ref|YP_004623990.1| SAM-dependent RNA methylase [Pyrococcus yayanosii CH1]
gi|334900450|gb|AEH24718.1| SAM-dependent RNA methylase, putative [Pyrococcus yayanosii CH1]
Length = 352
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 116/223 (52%), Gaps = 10/223 (4%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVT- 278
F V R+G+H TS++ R G + + LV+LD + ++ ++G+ T
Sbjct: 112 FAVRAERLGEHDFTSIDVARVVGKVIVEKTKALVNLDHPAVIFRAELVGRSFFLGVDTTG 171
Query: 279 QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTF 337
SLHRR ++ LK +IA ++ LA P G F+DP CG GTIP+E +L
Sbjct: 172 DHSLHRRPWRVYDHPAHLKASIANALIELAEP-DGGPFIDPFCGSGTIPIELALRGYTGE 230
Query: 338 FVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397
+C + +K +L + N + ++G ++R ++ ++ + +L VD V++LP+G +
Sbjct: 231 IICLEKFKKHLLGAKMNAI-SAGIIDR---INFILGDATKLSEYVKSVDFAVSNLPYGLK 286
Query: 398 VGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQAL 440
+G +S LY F E+ K++ R + +T+++ + +A+
Sbjct: 287 IGRRSAIPKLYMDFFAELAKVLEK---RGVFITTEKGAIEKAI 326
>gi|297526181|ref|YP_003668205.1| putative RNA methylase [Staphylothermus hellenicus DSM 12710]
gi|297255097|gb|ADI31306.1| putative RNA methylase [Staphylothermus hellenicus DSM 12710]
Length = 348
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 117/248 (47%), Gaps = 17/248 (6%)
Query: 200 MCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKL------NDTYFWLV 253
+ SS + P + F V R+G H TSM+ R G + +V
Sbjct: 80 LVSSLETIHYYITPHTS---FAVDTERLGSHEYTSMDISRIVGEIIIRKVEEKTGVKPVV 136
Query: 254 DLDDYDIDINLQIRYNEAYVGLPVTQT-SLHRRNIVEF-NITTLKPTIAYNMVRLASPIP 311
+L I I++ +R ++G+ +T + SLHRR + + LKPT+AY M+ L+
Sbjct: 137 NLRTPHIIIHVFVRDENFFLGVSLTGSRSLHRRGYRIYDHPAALKPTLAYAMLTLSGTRD 196
Query: 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371
V +DPMCGGGTIP+E L + D N K V + N + SG KV
Sbjct: 197 KQVIVDPMCGGGTIPIEAGLLHEEALIYGYDRNPKHVRGAKLNA-YASGVYG---KVVFG 252
Query: 372 VCNVRQL-CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430
V + R+L VD IV++ P+G R G LYR FL K ++P GR ++T
Sbjct: 253 VWDARRLHVIFDEQVDHIVSNPPYGIRYGDPVVIRKLYRDFLGSAYKSLKPG-GRLTIIT 311
Query: 431 SDRKHLIQ 438
++ ++++
Sbjct: 312 TEYNYVLK 319
>gi|309792423|ref|ZP_07686889.1| putative RNA methylase [Oscillochloris trichoides DG-6]
gi|308225533|gb|EFO79295.1| putative RNA methylase [Oscillochloris trichoides DG6]
Length = 352
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 86/177 (48%), Gaps = 6/177 (3%)
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353
L +A+ M RL+ P P D FL+ CG G++ +E L P + DI+ + ++A
Sbjct: 182 ALNGAVAHAMARLSLPDPTDRFLNIGCGSGSLLIERLLIGPTRRAIGCDIDPAALRCSKA 241
Query: 354 NVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLI 413
NV + L+ ++ + + QL A +D IV DLPFG VGS N LY L
Sbjct: 242 NV--EAAGLSERCQLE--LWDACQLPLHNASMDAIVADLPFGHLVGSHRENLELYPALLD 297
Query: 414 EIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRT 470
E ++ RP G +L S L++ L W ++IN+ G+ +F+L R+
Sbjct: 298 EAARVARP--GAHFVLLSHEVRLMERLLAQRNTWNLHSLVRINLGGLHPRIFVLERS 352
>gi|156937611|ref|YP_001435407.1| RNA methylase [Ignicoccus hospitalis KIN4/I]
gi|156566595|gb|ABU82000.1| putative RNA methylase [Ignicoccus hospitalis KIN4/I]
Length = 327
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 98/184 (53%), Gaps = 9/184 (4%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVT-QTSLHRRNI-VEFNITTLKPTIAYNMVRLASPI 310
V+LD + + + ++ VG+ V+ + SLHRR VE ++ +LKPTIAY M+ L
Sbjct: 119 VNLDYPSVVVRAEWYFDRVRVGVEVSGEESLHRRYYRVEEHMASLKPTIAYAMLFLGGAR 178
Query: 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370
+ +DPMCG GT+ +E +L + +C D+ K V K ++++ REL ++
Sbjct: 179 GAERLVDPMCGSGTVAIEGALDFAVPEIMCFDVKPKYVKKA---IINSEVARVREL-IAF 234
Query: 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430
V + R+L D IVT+ P+G R+GS LY F + +++ G+ +++T
Sbjct: 235 GVHDARKLHEVLDWADLIVTNPPYGVRMGSPKKVLKLYEEFFQSVARVLH---GKLVMIT 291
Query: 431 SDRK 434
R+
Sbjct: 292 PLRE 295
>gi|119584363|gb|EAW63959.1| THUMP domain containing 3, isoform CRA_b [Homo sapiens]
Length = 198
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 372 VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431
+CN L + VD IVTDLPFGKR+GSK N+ LY L E+ ++ P GRA+LLT
Sbjct: 81 ICN---LPLRTGSVDIIVTDLPFGKRMGSKKRNWNLYPACLREMSRVCTPTTGRAVLLTQ 137
Query: 432 DRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
D K +AL +W+ + +N+ G+++ V++L RT F
Sbjct: 138 DTKCFTKALSGMRHVWRKVDTVWVNVGGLRAAVYVLIRTPQAF 180
>gi|149414444|ref|XP_001514044.1| PREDICTED: THUMP domain-containing protein 2-like, partial
[Ornithorhynchus anatinus]
Length = 343
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 102/240 (42%), Gaps = 11/240 (4%)
Query: 122 WKKYMEIWKQITNYNGVLYPSIEQFNK----YNDILRHKKSIRNEINIKKESSCETEPQV 177
W + +WK + ++ + F + ++ K + + + S C+ E
Sbjct: 92 WLDAVSVWKNLLGFDASEEKLPQGFKRKAGGSTSVITKKLKMEQTVGMPDLSECQPEEPK 151
Query: 178 NNVQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGK--HTVTSM 235
++ E QN +E D S S N ++ FRV+C G TS
Sbjct: 152 EGMEQEH---QNPLTEEEDFPSERSENESAKGAGNDNDSPFTFRVSCRCSGAIARAFTSQ 208
Query: 236 ESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTL 295
E R G L + W DL + D++I + + + VG+PV + L R ++ L
Sbjct: 209 EVGRVIGMTLIKQFAWKADLRNPDLEIFIHLNDMYSVVGIPVFRLPLASRTYIK--TAGL 266
Query: 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANV 355
+ TIA+ M LA G + LDPMCG GTI +E + +P ++ DI+ + + NV
Sbjct: 267 RSTIAWAMASLAEINAGSLVLDPMCGLGTILLEAAKEWPDANYLGTDISNSQLQVARDNV 326
>gi|326437370|gb|EGD82940.1| hypothetical protein PTSG_03573 [Salpingoeca sp. ATCC 50818]
Length = 1612
Score = 82.0 bits (201), Expect = 7e-13, Method: Composition-based stats.
Identities = 74/261 (28%), Positives = 120/261 (45%), Gaps = 16/261 (6%)
Query: 220 FRVTCNRVG--KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDIN-LQIRYNEAYVGLP 276
FRVT R KH TS E R G L++ Y ++ DYD+++ + + ++ +G
Sbjct: 1305 FRVTGTRYSPNKH-FTSQELSRVAGDALHERYHVPANMTDYDVNVRVIALGEDKVLLGSQ 1363
Query: 277 VTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH 335
+T +L RR+ F N T + IAY + LA PG LDP CG TI +E +L+
Sbjct: 1364 LTAETLSRRHKQAFVNHVTTRSNIAYILFALARVGPGATVLDPFCGSATILLE-ALAASG 1422
Query: 336 TFFVCG--DINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--FKPACVDGIVTD 391
C D + K + N G L+ K + R L F+PA D I+T+
Sbjct: 1423 GSITCHGVDYSPKAIRGATQNA-KMEGVLD---KCRFHKGDARTLTKLFEPASFDAIITN 1478
Query: 392 LPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRK 451
P+G R G ++ LY +FL + +I++P GR ++ ++ + +T W+ +
Sbjct: 1479 PPWGVRSGQSTDLVQLYTIFLQDAARIIKPG-GRMVVFLLKAMLFVEIVRMTGK-WEIEE 1536
Query: 452 QIKINMSGMKSFVFILNRTAD 472
+ VF+L + D
Sbjct: 1537 SFVVKTRNNLPTVFVLRQRED 1557
>gi|14590534|ref|NP_142602.1| hypothetical protein PH0644 [Pyrococcus horikoshii OT3]
gi|3257052|dbj|BAA29735.1| 364aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 364
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 127/266 (47%), Gaps = 19/266 (7%)
Query: 213 PEENLLK----FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWL----VDLDDYDIDINL 264
P E +K F V R G+HT+TS++ R G + D + V+LD +
Sbjct: 108 PVERFIKVTESFAVRAFRKGEHTITSVDIARVVGKAIFDRLSRIGSPIVNLDHPSTIVRA 167
Query: 265 QIRYNEAYVGLPVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGG 322
++ ++G+ T SLHRR ++ LK +IA ++ LA G F+DP CG
Sbjct: 168 ELINEAFFLGIDTTGDHSLHRRPWRVYDHPAHLKASIANALIELAEVEDGASFIDPFCGS 227
Query: 323 GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP 382
GTIP+E +L +C + K + + N L +G + K+ + + R+L
Sbjct: 228 GTIPIELALRGYQGRIICLEKFAKHLNGAKMNAL-AAGVFD---KIEFIKGDARRLSKYV 283
Query: 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHI 442
VD V++LP+G ++G KS LY F E+ K+++ R + +T++++ + +A I
Sbjct: 284 DEVDFAVSNLPYGLKIGRKSMIPSLYERFFDELSKVLQK---RGVFITTEKEAIEKA--I 338
Query: 443 TSALWKCRKQIKINMSGMKSFVFILN 468
+K I G++ ++++
Sbjct: 339 EEVGFKITHYRIIGHGGLRVHTYVIS 364
>gi|126465534|ref|YP_001040643.1| RNA methylase [Staphylothermus marinus F1]
gi|126014357|gb|ABN69735.1| putative RNA methylase [Staphylothermus marinus F1]
Length = 348
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 114/227 (50%), Gaps = 14/227 (6%)
Query: 220 FRVTCNRVGKHTVTSMESERAFG----GKLNDTYFW--LVDLDDYDIDINLQIRYNEAYV 273
F V R+G H TSM+ R G K+ + +V+L I +++ ++ ++
Sbjct: 97 FAVDTERLGSHEYTSMDISRIVGEIIIKKVEEKTGIKPVVNLRTPHIIVHVFVKDENFFL 156
Query: 274 GLPVTQT-SLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
G+ +T + SLHRR + + LKPT+AY M+ L+ V +DPMCGGGTIP+E +L
Sbjct: 157 GVSLTGSRSLHRRGYRIYDHPAALKPTLAYAMLTLSGTRDKQVIVDPMCGGGTIPIEAAL 216
Query: 332 SYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-FKPACVDGIVT 390
+ + D N + + + N + SG KV V + R+L VD IV+
Sbjct: 217 LHEEAYIYGYDRNPRHIRGAKLNA-YASGVYG---KVVFGVWDARRLHEIFDEQVDHIVS 272
Query: 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLI 437
+ P+G R G LYR FL K ++P GR ++T++ +++
Sbjct: 273 NPPYGIRYGDPVAIRKLYRDFLDSTYKSLKPG-GRLTIITTEYNYVL 318
>gi|269925374|ref|YP_003321997.1| putative RNA methylase [Thermobaculum terrenum ATCC BAA-798]
gi|269789034|gb|ACZ41175.1| putative RNA methylase [Thermobaculum terrenum ATCC BAA-798]
Length = 360
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 5/172 (2%)
Query: 298 TIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH 357
T+AY M RL+ P GDV ++ CG GTI +E P V DI+ + + + NV +
Sbjct: 193 TVAYVMARLSEPSAGDVIVNLGCGSGTILIERLEMLPAKAVVGVDIDPEALACARRNV-Y 251
Query: 358 NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGK 417
+G KV L ++R D I DLPFG +GS ++N LY L E +
Sbjct: 252 AAGLTG---KVDLLRGDMRSTGLNSGFADVIYADLPFGHILGSHADNIHLYPDTLKESAR 308
Query: 418 IVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNR 469
I R + R I +TS+ + + + + + LW+ ++++ M ++ +F+L+R
Sbjct: 309 IAR-EGARGIFITSEIRLMRKVIDLCKHLWRQEGEVRLEMDKLRLMIFVLSR 359
>gi|292623187|ref|XP_691263.4| PREDICTED: THUMP domain-containing protein 2 [Danio rerio]
Length = 446
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 89/402 (22%), Positives = 167/402 (41%), Gaps = 56/402 (13%)
Query: 22 TVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIATFE 81
T G E+++ +E ++K + + GRVFF+ + + + + +L+ + + ++ E
Sbjct: 7 TAGAGMEELLAQEVRQKLCASQV-EQIPGRVFFSTN-AEPQTLTQLKSAERLFLLLHKAE 64
Query: 82 NFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNGVLYP 141
N + K A I+ +V+ +IWKQ
Sbjct: 65 PIALPN-----------------NPGKAAAVIKERVVGDP-----DIWKQT-------LL 95
Query: 142 SIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQELKEIDINSMC 201
S F + + R + R ++ES E + + V L+ Q KE+
Sbjct: 96 SWTAFQEELECRRDQGHKRKREEDEEESVIEADGSTHTVSSNTHLLERQ--KEV------ 147
Query: 202 SSQNQKTNFTNPEENLLKFRVTCNRVG--KHTVTSMESERAFGGKLNDTYFWLVDLDDYD 259
++++ P FRV+C G + R G + + W VDL +
Sbjct: 148 ---GKESHLQTP-----SFRVSCRCSGVIARSNNPQRLSRIIGMAIKEQLGWKVDLREPV 199
Query: 260 IDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLAS-PIPGDVFLDP 318
+++N+ + + VG+P+ + L R+ ++ N L+ TIA+ M L + V LDP
Sbjct: 200 LEVNVYLSDDHCIVGIPLLKHPLASRSYMKHN--GLRSTIAWAMTSLCPDELNNCVILDP 257
Query: 319 MCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378
MCG G + +E + Y + F+ D + + K NV SG E +V L + ++
Sbjct: 258 MCGVGAVLLEAAQEYSNAVFLGMDTDGSQLQKAAENV-KASG---MEGRVQLLQSSALEI 313
Query: 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVR 420
VD ++ D+PFG++ S+ L L E+ +++R
Sbjct: 314 PLADGMVDAVLCDVPFGRKFSCSSDMTTALPLLLREMERVLR 355
>gi|428179109|gb|EKX47981.1| hypothetical protein GUITHDRAFT_106067 [Guillardia theta CCMP2712]
Length = 535
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 122/281 (43%), Gaps = 28/281 (9%)
Query: 211 TNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTY-----------------FWLV 253
T+ E ++ + ++ +H S + ER G L++ Y
Sbjct: 210 TDAAEEIISAAMETSKSDEHGFQSSQVEREVGSVLHEKYKESTSLLDGQSAKREGARVRA 269
Query: 254 DLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPG 312
D+ +++ I + I ++ V + L RR+ + F TLKP +AY M+R++ G
Sbjct: 270 DMKKFEVCIRVDIVMDKVLVCSMPNKDQLSRRHKLAFVRSVTLKPNVAYCMIRMSGLKDG 329
Query: 313 DVFLDPMCGGGTIPVECSLSYPH-----TFFVCG-DINEKLVLKTQANVLHNSGNLNREL 366
LDP CGGGTIP+E + + +CG D ++ +V +AN + + +
Sbjct: 330 GSLLDPFCGGGTIPMEAACIFGRAPRDKAGRLCGCDRSKTVVEGAKANA--KASMIEHLV 387
Query: 367 KVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA 426
+ + L V F D IVT+ P+G RVG ++ +Y+ FL KI+R +G
Sbjct: 388 EFTELNARVLDRSFSSNSFDVIVTNPPWGVRVGKDADLERIYKGFLFSSAKILR--VGGR 445
Query: 427 ILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFIL 467
++ R ++ L L++ + + +F+L
Sbjct: 446 LVFLVQRCEMVLELVRKLGLFRILSMCAVKTGDLVPTIFVL 486
>gi|156742547|ref|YP_001432676.1| RNA methylase [Roseiflexus castenholzii DSM 13941]
gi|156233875|gb|ABU58658.1| putative RNA methylase [Roseiflexus castenholzii DSM 13941]
Length = 362
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 119/268 (44%), Gaps = 32/268 (11%)
Query: 215 ENLLKFRVTCNRVGKHTVTSMES----ERAFGGKLNDTY---------FWLVDLDDYDID 261
E + +RV +VG+ +++ ER + + + FWLV + +
Sbjct: 113 EGRIHYRVIARQVGRLPYRRVDAQVAVERGIAARPDHRWRLVADGGIEFWLVQ---WPGE 169
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCG 321
L +R ++ + HR VE +L+P A + L +P D FLDPMCG
Sbjct: 170 ALLMVRLSD--------ERMRHRDYKVEHLPASLRPAAAAALAWLTTPRDDDRFLDPMCG 221
Query: 322 GGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381
GTI +E + + + GDI+ + V +AN+ +R VS + R+L
Sbjct: 222 AGTILIERAHLGRYRALIGGDIDPEAVATARANI------GSRYKPVSIHEWDARRLPLD 275
Query: 382 PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441
V + +LPFG ++GS N LY FL E +++RP R + L+ D + L AL
Sbjct: 276 AGSVTALAVNLPFGAQMGSLEENRTLYPEFLREAARVLRPG-ARLVALSGDARTLSDALR 334
Query: 442 ITSALWKCRKQIKINMSGMKSFVFILNR 469
+ L +C + + G ++ + + R
Sbjct: 335 RNNRLARC-ATYPVLILGRRAVIVVAER 361
>gi|443709564|gb|ELU04197.1| hypothetical protein CAPTEDRAFT_207872 [Capitella teleta]
Length = 333
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 7/140 (5%)
Query: 257 DYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFL 316
Y I + I G+P+ + L +R ++ L+ TIA+ M ++ PGDV L
Sbjct: 113 SYPSQIYVHINDERTVFGIPIFKKPLSQRKYIKH--IGLRSTIAWAMAHYSNLKPGDVIL 170
Query: 317 DPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376
DPMCG TI +E + ++P+ + D N+ + K Q N L K+S + +V
Sbjct: 171 DPMCGCATILMEAAHAWPNIHCIAADKNQLQLKKAQEN-----AALIPNAKISLICSDVC 225
Query: 377 QLCFKPACVDGIVTDLPFGK 396
L KP+ V+ V DLPFG+
Sbjct: 226 DLPLKPSSVNAFVCDLPFGQ 245
>gi|163845942|ref|YP_001633986.1| putative RNA methylase [Chloroflexus aurantiacus J-10-fl]
gi|222523667|ref|YP_002568137.1| putative RNA methylase [Chloroflexus sp. Y-400-fl]
gi|163667231|gb|ABY33597.1| putative RNA methylase [Chloroflexus aurantiacus J-10-fl]
gi|222447546|gb|ACM51812.1| putative RNA methylase [Chloroflexus sp. Y-400-fl]
Length = 342
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 6/178 (3%)
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353
L +A+ M L+ P GD L+ CG GT+ +E L + D + + A
Sbjct: 171 ALNGPVAHAMAVLSKPHAGDRVLNVGCGSGTLLIERLLITTAAQAIGCDTDPTAL----A 226
Query: 354 NVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLI 413
N G +V + QL A +D ++ DLPFG VGS + N LY L
Sbjct: 227 CAWRNLGAAGLSKRVELYDWDACQLPLPSASIDVVLADLPFGHLVGSHTTNLTLYPALLA 286
Query: 414 EIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTA 471
E ++ RP GRA+L++ + + + ++L T W+ +Q+++++ G+ +F+L RT
Sbjct: 287 EAARVTRPG-GRAVLISHEVRLMERSL-ATLPQWRVDQQLRVDLGGLYPRIFVLRRTG 342
>gi|379003930|ref|YP_005259602.1| putative N6-adenine-specific DNA methylase [Pyrobaculum oguniense
TE7]
gi|375159383|gb|AFA38995.1| putative N6-adenine-specific DNA methylase [Pyrobaculum oguniense
TE7]
Length = 330
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 115/257 (44%), Gaps = 42/257 (16%)
Query: 177 VNNVQIEKGDLQNQELK---EIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVT 233
V I GD ++L+ EI + S T FT V C RVG+H T
Sbjct: 54 VERFGIFLGDGYAEDLRGVVEIAQRHLAGSLRYLTRFTT-------VGVRCERVGQHGFT 106
Query: 234 SMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNI 292
S + ER G ++ + + L + D+++N+ + V + V + SL R V +
Sbjct: 107 SRDVEREVGKWFKESGY-TISLVEPDVEVNVDVVERYVAVWITVAKRSLKDRPWRVYEHY 165
Query: 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKT- 351
+L P IA MVRLA P PG+ D CGGGTI E + YPH ++C DI+ + V
Sbjct: 166 ASLNPIIANAMVRLARPKPGETVCDLTCGGGTIVAEAAELYPHVRYLCVDISLRHVKGAV 225
Query: 352 -------QANVL-HNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSN 403
Q +VL +S L+R + +P C D V + P+G R+ +
Sbjct: 226 KNTAAFPQVDVLWFDSTKLHRAV--------------RPVC-DKFVFNPPYGFRIPERVG 270
Query: 404 NFLLYRLFLIEIGKIVR 420
LYRL +GK +R
Sbjct: 271 R--LYRL----LGKAMR 281
>gi|149050579|gb|EDM02752.1| rCG62307 [Rattus norvegicus]
Length = 523
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 132/286 (46%), Gaps = 46/286 (16%)
Query: 122 WKKYMEIWKQITNYN--------GVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCET 173
W K + +W+++ +++ G P +++ ND + KK E+ + +S E+
Sbjct: 105 WLKAISLWRKLLDHDTNGEKVSQGDANP-LKRKAGENDSITPKKLKLEEMQVVDKSHGES 163
Query: 174 EPQVNNVQIEKGD--LQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHT 231
+ +E+G+ + EL+E ++ + + +PE+ L FR++C G +
Sbjct: 164 QQDQPQGPLEQGETLARTDELQEQRLHR---ASETAAHAQSPED--LTFRISCRCSG--S 216
Query: 232 VTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFN 291
+ + + + F L+D Y + VG+P+ + L R ++
Sbjct: 217 IRKVVTGQIFM-HLSDAY---------------------SVVGIPLLRVPLASRTYLQ-- 252
Query: 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKT 351
L+ TIA+ M +A G + LDPMCG GTI VE + +P F+V D+++ +L
Sbjct: 253 TAGLRSTIAWAMASIAEIKAGALVLDPMCGLGTILVEAAEEWPDVFYVGADVSDSQLLGA 312
Query: 352 QANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397
N L +G +R + L +V L VD I++D+PFGK+
Sbjct: 313 CDN-LKAAGLAHR---IELLKGSVADLPLPAQSVDVIISDIPFGKK 354
>gi|312136879|ref|YP_004004216.1| RNA methylase [Methanothermus fervidus DSM 2088]
gi|311224598|gb|ADP77454.1| putative RNA methylase [Methanothermus fervidus DSM 2088]
Length = 366
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 131/291 (45%), Gaps = 40/291 (13%)
Query: 209 NFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYF------WLVDLDDYDIDI 262
+F P ++ F + R G+H TSM+ R G + D+Y V+LD+ D+ +
Sbjct: 82 SFIKPNQS---FAIRSKRFGEHDFTSMDIARVAGQAVIDSYLSSKNKRLEVNLDEPDVIV 138
Query: 263 NLQIRYNEAYVGLPVT-QTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
+++ N VG+ T LH+R + + L P IA +MV+++S + +DPMC
Sbjct: 139 RVELIDNLLLVGIDTTGDDGLHKRGYRIYQHPAPLNPVIAASMVKISSWKINETLVDPMC 198
Query: 321 GGGTIPVECSL-----------SYPHTFFVCGDINEKLVLKTQANVL-------HNSG-- 360
G GTI VE + + + + +K + + N++ H G
Sbjct: 199 GSGTILVEAAFIGKNIPPGHLRDFAYKKLFDMEPTQKKIREVDLNLIGIEKFKKHVEGCK 258
Query: 361 ----NLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIG 416
NL ++K+ ++ VD IVT+ P+G R+G K LY+ FL E
Sbjct: 259 KIVKNLGLDIKI--FQGEAERMHEYVENVDVIVTNPPYGLRIGRKYITKKLYKDFLKEAY 316
Query: 417 KIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFIL 467
I+ P GR + +T ++ + + + + K+IKI + + +F+L
Sbjct: 317 NIL-PSHGRIVFITPMKRFMRKIANKIG--YDINKEIKIEYGKLPASIFLL 364
>gi|153868946|ref|ZP_01998664.1| RNA methylase [Beggiatoa sp. PS]
gi|152074477|gb|EDN71327.1| RNA methylase [Beggiatoa sp. PS]
Length = 272
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 92/191 (48%), Gaps = 19/191 (9%)
Query: 272 YVGLPVTQTSLHRRN--IVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
YVGL +T S +R VE +L+PTIA +V ++P D+F+DPMCG GTI +E
Sbjct: 82 YVGLRLTDISFRQRQYKAVE-RAGSLRPTIAIALVIASNPTSSDIFIDPMCGVGTIAIER 140
Query: 330 SLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC------NVRQLCFKPA 383
T GD +E V Q NV NL P+V +++ L K
Sbjct: 141 LRFGNATKVYAGDSDESAVTIAQGNV--KQSNL-------PIVIYQWNANDLQTLKNKVG 191
Query: 384 CVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHIT 443
V+ +V +LPFGK+ +N Y LI +I+ P G +LLT+ K L+ A +
Sbjct: 192 KVNKLVCNLPFGKQFKVSTNFQDFYFNLLIPWREILLPD-GMMVLLTTQTKALVSAAKKS 250
Query: 444 SALWKCRKQIK 454
+ +K Q K
Sbjct: 251 TTFYKMCGQSK 261
>gi|94732927|emb|CAK04154.1| novel protein [Danio rerio]
Length = 349
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 89/397 (22%), Positives = 161/397 (40%), Gaps = 56/397 (14%)
Query: 22 TVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIATFE 81
T G E+++ +E ++K + + GRVFF+ + + + + +L+ + + ++ E
Sbjct: 5 TAGAGMEELLAQEVRQKLCASQV-EQIPGRVFFSTN-AEPQTLTQLKSAERLFLLLHKAE 62
Query: 82 NFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNGVLYP 141
N + K A I+ +V+ +IWKQ
Sbjct: 63 PIALPN-----------------NPGKAAAVIKERVV-----GDPDIWKQT-------LL 93
Query: 142 SIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQELKEIDINSMC 201
S F + + R + R ++ES E + + V L+ Q KE+ S
Sbjct: 94 SWTAFQEELECRRDQGHKRKREEDEEESVTEADGSTHTVSSNTHLLEKQ--KEVGKESHL 151
Query: 202 SSQNQKTNFTNPEENLLKFRVTCNRVG--KHTVTSMESERAFGGKLNDTYFWLVDLDDYD 259
+ L FRV+C G + R G + + W VDL +
Sbjct: 152 QT--------------LSFRVSCRCSGVIARSDNPQRLSRIIGMAIKEQLGWKVDLREPV 197
Query: 260 IDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLAS-PIPGDVFLDP 318
+++N+ + + VG+P+ + L R+ ++ N L+ TIA+ M L + V LDP
Sbjct: 198 LEVNVYLSDDHCIVGIPLLKHPLASRSYMKHN--GLRSTIAWAMTSLCPDELNNCVILDP 255
Query: 319 MCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378
MCG G + +E + Y + F+ D + + K NV SG E +V L + ++
Sbjct: 256 MCGVGAVLLEAAQEYSNAVFLGMDTDGSQLQKAAENV-KASG---MEGRVQLLQSSALEI 311
Query: 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEI 415
VD ++ D+PFG++ S+ L L E+
Sbjct: 312 PLADGMVDAVLCDVPFGRKFSCSSDMTTALPLLLREM 348
>gi|333910011|ref|YP_004483744.1| rRNA (guanine-N(2)-)-methyltransferase [Methanotorris igneus Kol 5]
gi|333750600|gb|AEF95679.1| rRNA (guanine-N(2)-)-methyltransferase [Methanotorris igneus Kol 5]
Length = 384
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 128/289 (44%), Gaps = 44/289 (15%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTY------FWLVDLDDYDIDINLQIRYNEAYV 273
F + R G+H TS++ R G + D Y V+LD+ D+ I + + +NE +
Sbjct: 96 FAIRPLRAGEHDFTSIDVGRVAGQAVIDAYKNAKGVRLKVNLDNPDVIIRVDVIFNELII 155
Query: 274 GLPVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
G+ T LHRR +N L +IA +V+L++ ++ LDPMCG GTI VE ++
Sbjct: 156 GIDTTGDEGLHRRGYRAYNHPAHLNASIASALVKLSNWKDDEILLDPMCGSGTILVEAAM 215
Query: 332 ---SYPHTFF-------------VCGDINEKLVLKTQANVL--------HNSGNLNRELK 367
+ P F +I ++V + L H SG +
Sbjct: 216 IKRNIPPGKFRDDFAFIKIFGREALDEIKSQIVENKKMLKLYGVEKFKKHISGAVKNAEN 275
Query: 368 VSPL---------VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKI 418
V + + ++ + VD ++T+ P+G R+G K LY FL + KI
Sbjct: 276 VGVVDTIKFIEGDATELEKIDYLKDGVDVVITNPPYGIRIGGKKMVRNLYNNFLNSLKKI 335
Query: 419 VRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFIL 467
R I++T++ K L A + +K +++ ++ G+ + VF+L
Sbjct: 336 THDD-SRIIIITAEDKILRNAA--INNNYKIKEEFRVMYGGLDTVVFVL 381
>gi|168010255|ref|XP_001757820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691096|gb|EDQ77460.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 696
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 99/213 (46%), Gaps = 35/213 (16%)
Query: 283 HRRNIVEFNITTLKPTI-----------------AYNMVRLASPIPGDVFLDPMCGGGTI 325
+R+ +V T+LKP+I AY +++LA PGD+ LDPMCG GTI
Sbjct: 257 YRKALVH---TSLKPSICQVTELALCGFSSFNSTAYGILQLADVQPGDIVLDPMCGCGTI 313
Query: 326 PVECS-LSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ-----LC 379
P+E S + GD + ++ N + S C++ Q L
Sbjct: 314 PLEASDWLGSRIMGLGGDFINTAIEASRVNSVAGE---------SAGPCDIVQWDASMLP 364
Query: 380 FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQA 439
+ A VD ++ D+PFG R G+ +L + ++ +++RP G A+L+ + +
Sbjct: 365 LRTASVDRVICDMPFGNRCGNHKVREVLCPRVVKQVVRVLRPGSGVAVLMAQSKTMKEEI 424
Query: 440 LHITSALWKCRKQIKINMSGMKSFVFILNRTAD 472
+ A ++ ++M G+K VF+++RT +
Sbjct: 425 VVNQKAYLSLQQHFYVHMEGLKVDVFVVHRTTE 457
>gi|145591468|ref|YP_001153470.1| RNA methylase [Pyrobaculum arsenaticum DSM 13514]
gi|145283236|gb|ABP50818.1| putative RNA methylase [Pyrobaculum arsenaticum DSM 13514]
Length = 330
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 114/257 (44%), Gaps = 42/257 (16%)
Query: 177 VNNVQIEKGDLQNQELK---EIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVT 233
V I GD ++L EI + S T FT V C RVG+H T
Sbjct: 54 VERFGIFLGDGFGEDLSGVVEIAQRHLAGSLRYLTRFTT-------VGVRCERVGQHGFT 106
Query: 234 SMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNI 292
S + ER G + F + L + D+++N+ + + V + V + SL R V +
Sbjct: 107 SRDVEREVGRWFKERGF-TISLVEPDVEVNVDVVESYIAVWITVAKRSLKDRPWRVYEHY 165
Query: 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKT- 351
+L P IA MVRLA P PG+ D CGGGTI E + YPH ++C DI+ + V
Sbjct: 166 ASLNPIIANAMVRLAKPKPGETVCDLTCGGGTIVAEAAELYPHARYLCVDISLRHVKGAV 225
Query: 352 -------QANVL-HNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSN 403
Q +VL +S L+R + +P C D V + P+G R+ +
Sbjct: 226 KNTAAFPQVDVLWFDSTKLHRAV--------------RPVC-DKFVFNPPYGFRIPERVG 270
Query: 404 NFLLYRLFLIEIGKIVR 420
LYRL +GK +R
Sbjct: 271 R--LYRL----LGKAMR 281
>gi|148656917|ref|YP_001277122.1| putative RNA methylase [Roseiflexus sp. RS-1]
gi|148569027|gb|ABQ91172.1| putative RNA methylase [Roseiflexus sp. RS-1]
Length = 368
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 11/228 (4%)
Query: 215 ENLLKFRVTCNRVGKHTVTSMESERAF--GGKLNDTYFWLVDLDDYDIDINLQIRYNEAY 272
E + +RV +VG+ ++++ A G + W + D I+I L EA
Sbjct: 119 EGRIHYRVVARQVGRAPYRRVDAQIAVERGIAARPDHRWRLSADG-GIEIWLTQWPGEAL 177
Query: 273 VGLPVTQTSL-HRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
+ + ++ + HR VE +L+P A + L SP DVFLDPMCG GTI +E +
Sbjct: 178 LMVRLSDERMRHRTYKVEHLPASLRPAAAAALAWLTSPRDDDVFLDPMCGAGTILIERAH 237
Query: 332 SYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTD 391
+ + GD + V +AN+ +R +S + RQL V + +
Sbjct: 238 LGRYRALIGGDSDPDAVATARANI------GSRYQPISIHEWDARQLPLDAGSVTALAVN 291
Query: 392 LPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQA 439
LPFG +VGS N LY FL E +++RP R + L+ D + L A
Sbjct: 292 LPFGAQVGSVEENRDLYPAFLREAVRVLRPG-ARFVALSGDVRTLGDA 338
>gi|332158904|ref|YP_004424183.1| hypothetical protein PNA2_1264 [Pyrococcus sp. NA2]
gi|331034367|gb|AEC52179.1| hypothetical protein PNA2_1264 [Pyrococcus sp. NA2]
Length = 365
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 110/227 (48%), Gaps = 14/227 (6%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWL----VDLDDYDIDINLQIRYNEAYVGL 275
F V R G H +TS++ R G + D V+LD + ++ ++G+
Sbjct: 121 FAVRSFRKGNHKITSVDMARVVGKAIFDRLSKFGTPKVNLDHPSVIFRAELIGEAFFLGV 180
Query: 276 PVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY 333
VT SLHRR ++ LK +IA ++ LA G F+DP CG GTIP+E +L
Sbjct: 181 DVTGDHSLHRRPWRVYDHPAHLKASIANALLELAKLEEG-TFIDPFCGSGTIPIELALRG 239
Query: 334 PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLP 393
+C + K + + N L +G + K++ ++ + +L VD V++LP
Sbjct: 240 YQGNIICLEKYRKHLRGAKMNAL-AAGVYD---KINFILGDATKLSEYIKSVDFAVSNLP 295
Query: 394 FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQAL 440
+G ++G +S LY F E+ KI+ R + +T++R + +AL
Sbjct: 296 YGLKIGRRSMIPKLYMDFFSELSKILEK---RGVFITTERDAIEKAL 339
>gi|351695451|gb|EHA98369.1| THUMP domain-containing protein 2 [Heterocephalus glaber]
Length = 560
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 16/225 (7%)
Query: 218 LKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGL 275
L FRV+C G TS E R G L + W DL + +++I + + G+
Sbjct: 262 LTFRVSCRCTGTIGKVFTSQEVGRIIGIALMKQFGWKADLRNPNLEIFVHLNDIYTVAGI 321
Query: 276 PVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH 335
P+ + L R ++ L+ TIA+ M LA G LDPMCG GTI +E + +P
Sbjct: 322 PMFRAPLASRTYIK--TAGLRSTIAWAMASLAEIKVGTFVLDPMCGLGTILLEAAKEWPD 379
Query: 336 TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFG 395
++V D+++ +L N+ + LN K+ L + +L +D I++D+PFG
Sbjct: 380 GYYVGADVSDSQLLGAWDNL--KAAGLND--KIELLKVSAIELPLPSESIDIIISDIPFG 435
Query: 396 K--RVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQ 438
K ++G L ++ +G + +LL+ D L++
Sbjct: 436 KKFKLGKDIKTILQEMERVLHVGGTI------VLLLSKDHHRLLK 474
>gi|18977374|ref|NP_578731.1| hypothetical protein PF1002 [Pyrococcus furiosus DSM 3638]
gi|397651508|ref|YP_006492089.1| N6-adenine-specific DNA methylase [Pyrococcus furiosus COM1]
gi|18893057|gb|AAL81126.1| hypothetical protein PF1002 [Pyrococcus furiosus DSM 3638]
gi|393189099|gb|AFN03797.1| N6-adenine-specific DNA methylase [Pyrococcus furiosus COM1]
Length = 365
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 117/238 (49%), Gaps = 18/238 (7%)
Query: 213 PEENLLK----FRVTCNRVGKHTVTSMESERAFGG----KLNDTYFWLVDLDDYDIDINL 264
P E +K F V R G H +TS++ R G +L+ LV+LD +
Sbjct: 110 PVEQFVKVSETFAVRSFRKGDHNITSIDIARTVGEAIFERLSRFGTPLVNLDHPAVIFRA 169
Query: 265 QIRYNEAYVGLPVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGG 322
++ + ++G+ T +SLH+R ++ LK +IA M+ LA + G LDPMCG
Sbjct: 170 ELIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANAMIELAE-LDGGSVLDPMCGS 228
Query: 323 GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP 382
GTI +E +L + + K ++ + N L +G L+ K+ + + QL
Sbjct: 229 GTILIELALRRYSGEIIGIEKYRKHLIGAEMNAL-AAGVLD---KIKFIQGDATQLSQYV 284
Query: 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQAL 440
VD +++LP+G ++G KS LY F E+ K++ R + +T+++K + +A+
Sbjct: 285 DSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVLEK---RGVFITTEKKAIEEAI 339
>gi|219850426|ref|YP_002464859.1| putative RNA methylase [Chloroflexus aggregans DSM 9485]
gi|219544685|gb|ACL26423.1| putative RNA methylase [Chloroflexus aggregans DSM 9485]
Length = 352
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 6/174 (3%)
Query: 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN 358
+A+ M L+ P P D L+ CG GT+ +E L P + D + + NV
Sbjct: 185 VAHAMALLSRPHPTDRVLNIGCGSGTLLIERLLIGPAVQALGCDTDPAALACAYRNV--A 242
Query: 359 SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKI 418
+ L R + + + + L A +D I+ DLPFG VGS + N LY L E ++
Sbjct: 243 AAGLGRNVLLYD--WDAQALPLPTASMDVILADLPFGHLVGSHTTNLSLYPALLREAARV 300
Query: 419 VRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTAD 472
R GRA+L++ + + L++ +W C +Q+++++ G+ +F+L R D
Sbjct: 301 TRAS-GRAVLISHEVR-LMERTLAELPVWHCEQQLRVDLGGLYPRIFVLRRRDD 352
>gi|380258983|pdb|3TLJ|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosyl-L-Homocysteine
gi|380258984|pdb|3TLJ|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosyl-L-Homocysteine
gi|380258985|pdb|3TM4|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosylmethionine
gi|380258986|pdb|3TM4|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosylmethionine
gi|380258987|pdb|3TM5|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With Sinefungin
gi|380258988|pdb|3TM5|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With Sinefungin
Length = 373
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 117/238 (49%), Gaps = 18/238 (7%)
Query: 213 PEENLLK----FRVTCNRVGKHTVTSMESERAFGG----KLNDTYFWLVDLDDYDIDINL 264
P E +K F V R G H +TS++ R G +L+ LV+LD +
Sbjct: 110 PVEQFVKVSETFAVRSFRKGDHNITSIDIARTVGEAIFERLSRFGTPLVNLDHPAVIFRA 169
Query: 265 QIRYNEAYVGLPVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGG 322
++ + ++G+ T +SLH+R ++ LK +IA M+ LA + G LDPMCG
Sbjct: 170 ELIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANAMIELAE-LDGGSVLDPMCGS 228
Query: 323 GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP 382
GTI +E +L + + K ++ + N L +G L+ K+ + + QL
Sbjct: 229 GTILIELALRRYSGEIIGIEKYRKHLIGAEMNAL-AAGVLD---KIKFIQGDATQLSQYV 284
Query: 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQAL 440
VD +++LP+G ++G KS LY F E+ K++ R + +T+++K + +A+
Sbjct: 285 DSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVLEK---RGVFITTEKKAIEEAI 339
>gi|14521594|ref|NP_127070.1| hypothetical protein PAB0923 [Pyrococcus abyssi GE5]
gi|5458813|emb|CAB50300.1| Putative RNA methylase, UPF0020 family [Pyrococcus abyssi GE5]
gi|380742204|tpe|CCE70838.1| TPA: N6-adenine-specific DNA methylase [Pyrococcus abyssi GE5]
Length = 363
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 114/238 (47%), Gaps = 19/238 (7%)
Query: 213 PEENLLK----FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWL----VDLDDYDIDINL 264
P E +K F V R G+H VTS++ R G + + V+LD +
Sbjct: 109 PVEKFVKVSESFAVRSFREGEHEVTSVDIARIVGKAIFERLSRFGTPRVNLDHPTVIFRA 168
Query: 265 QIRYNEAYVGLPVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGG 322
++ ++G+ T SLHRR ++ LK +IA ++ LA P F+DP CG
Sbjct: 169 ELIGEAFFLGIDTTGDHSLHRRPWRVYDHPAHLKSSIANALIELAQP--EGSFIDPFCGS 226
Query: 323 GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP 382
GTIP+E +L +C + K + + N L +G + K+ ++ + +L
Sbjct: 227 GTIPIELALRGYEGKIICLEKYHKHLNGAKMNAL-AAGVYD---KIEFILGDATRLSEYL 282
Query: 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQAL 440
VD V++LP+G ++G +S LY FL E+ K++ R + +T+++ + +A+
Sbjct: 283 ESVDFAVSNLPYGLKIGRRSMIPELYSKFLSELAKVLEK---RGVFITTEKNAIERAI 337
>gi|389852526|ref|YP_006354760.1| SAM-dependent RNA methylase [Pyrococcus sp. ST04]
gi|388249832|gb|AFK22685.1| putative SAM-dependent RNA methylase [Pyrococcus sp. ST04]
Length = 350
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVT- 278
F V R G H S++ R G + + V+LD + I ++ + +G+ +T
Sbjct: 111 FGVRAERFGSHEFRSVDIARVVGRIIQEKTKAPVNLDHPAVIIRAELIGDIFILGVDITG 170
Query: 279 QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTF 337
SLHRR ++ LK +IA ++ L+ P +F DP CG GTIP+E +L
Sbjct: 171 DHSLHRRPWRVYDHPAHLKASIANALIELSKP--EGIFADPFCGSGTIPIELALRGYKNR 228
Query: 338 FVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397
+C + K + + N + +G + K+ ++ + +L V+ +V++LP+G +
Sbjct: 229 IICLEKFRKHLTGAKMNAI-AAGVFD---KIEFVLGDATKLSKYVEEVNTVVSNLPYGLK 284
Query: 398 VGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQAL 440
+G K LY F E+ K++ GR + +T+++ + +A+
Sbjct: 285 IGKKGMIPKLYSEFFSELSKVLN---GRGVFITTEKNAIEKAI 324
>gi|148706588|gb|EDL38535.1| mCG15884, isoform CRA_a [Mus musculus]
Length = 505
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 145/329 (44%), Gaps = 57/329 (17%)
Query: 122 WKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQ 181
W + + +WK++ ++ P E+ ++ + +K+ NE I K+ E + +V
Sbjct: 108 WLEAISLWKKLLEHD----PKREKVSQRDANPLKRKAGENETIIAKKLKVEEKQEVAK-- 161
Query: 182 IEKGDLQNQEL-------------KEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG 228
+ G+ Q +L E+ + + S+ + + + E+ L FRV+C G
Sbjct: 162 -DHGESQEDKLLQGSPEQGEAVTRTELQDHRLNSTTEKAADAQDQED--LTFRVSCRCTG 218
Query: 229 KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIV 288
V + + + F L+D Y + VG+P+ + L R +
Sbjct: 219 --NVRKVITGQIFM-HLSDAY---------------------SVVGIPLLRMPLASRTYI 254
Query: 289 EFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLV 348
+ L+ TIA+ M +A G + LDPMCG GTI VE + +P F++ D+++ +
Sbjct: 255 Q--TAGLRSTIAWAMASIAEIKAGALVLDPMCGLGTILVEAAEEWPDVFYMGADMSDAQL 312
Query: 349 LKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLY 408
L N L +G +R + L +V L D I++D+PFGK+ +
Sbjct: 313 LGACDN-LKAAGLTDR---IELLKSSVTDLPLPSQSTDVIISDIPFGKKFKLGKD----I 364
Query: 409 RLFLIEIGKIVRPQIGRAILLTSD-RKHL 436
+ L E+ +++R +LL+ D +HL
Sbjct: 365 KSILQEMERVLRVGGAMVLLLSEDHHRHL 393
>gi|341582482|ref|YP_004762974.1| putative N6-adenine-specific DNA methylase [Thermococcus sp. 4557]
gi|340810140|gb|AEK73297.1| predicted N6-adenine-specific DNA methylase [Thermococcus sp. 4557]
Length = 365
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 113/227 (49%), Gaps = 14/227 (6%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWL----VDLDDYDIDINLQIRYNEAYVGL 275
F V R G+H +TS++ + G + + V+LD + ++ + ++G+
Sbjct: 121 FAVRSFRKGEHKITSIDISKTVGKAIFERLERFGTPRVNLDHPAVIFRAELVGDVFFLGI 180
Query: 276 PVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY 333
T +SLH+R ++ LK +IA ++ LA P G F+DP CG GTIP+E +L
Sbjct: 181 DTTGDSSLHKRPWRVYDHPAHLKASIANALIELAKP-DGGSFIDPFCGSGTIPIELALRG 239
Query: 334 PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLP 393
+ + K + + N L ++G L R + ++ + +L VD V++LP
Sbjct: 240 YGGRIIGLEKYRKHLRGAEMNAL-SAGVLER---IEFILGDATRLSEYVESVDFAVSNLP 295
Query: 394 FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQAL 440
+G ++G KS LY F E+ K++ R + +T++++ + +A+
Sbjct: 296 YGLKIGRKSMIPGLYMDFFAELAKVLEK---RGVFITTEKRAIEKAI 339
>gi|375084230|ref|ZP_09731237.1| putative N6-adenine-specific DNA methylase [Thermococcus litoralis
DSM 5473]
gi|374741115|gb|EHR77546.1| putative N6-adenine-specific DNA methylase [Thermococcus litoralis
DSM 5473]
Length = 365
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 119/255 (46%), Gaps = 16/255 (6%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWL----VDLDDYDIDINLQIRYNEAYVGL 275
F V R G+H +TS+E R G + + V+LD + ++ ++G+
Sbjct: 121 FAVRPFRKGEHKITSVEIARTVGEAIFERLSRFGSPRVNLDHPAVIFRAELVGEVFFLGI 180
Query: 276 PVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY 333
T +SLH+R +N LK +IA ++ L P G F+DP CG GTI +E +L
Sbjct: 181 DTTGDSSLHKRPWRVYNHPAHLKASIANALIELVEP-DGRSFIDPFCGSGTILIELALRG 239
Query: 334 PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLP 393
+ + K + + N L +G L+R + + + +L VD V++LP
Sbjct: 240 YEGRIIGLEKYRKHIRGAEMNAL-AAGVLDR---IEFIHGDATKLSQYVESVDFAVSNLP 295
Query: 394 FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQI 453
+G ++G KS LY F E+ K++ R + +T+++K + +A IT +K +
Sbjct: 296 YGLKIGRKSMIPRLYMAFFGELSKVLEK---RGVFITTEKKAIEKA--ITENGFKIKHHR 350
Query: 454 KINMSGMKSFVFILN 468
I G+ +++
Sbjct: 351 LIGHGGLMVHTYVVE 365
>gi|223477518|ref|YP_002581884.1| N6-adenine-specific RNA methylase containing THUMP domain
[Thermococcus sp. AM4]
gi|214032744|gb|EEB73573.1| Putative N6-adenine-specific RNA methylase containing THUMP domain
[Thermococcus sp. AM4]
Length = 365
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 114/227 (50%), Gaps = 14/227 (6%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWL----VDLDDYDIDINLQIRYNEAYVGL 275
F V R G+H +TS++ + G + + V+LD + ++ ++G+
Sbjct: 121 FAVRSFRKGEHKITSVDIAKTVGKAIFERLERFGTPKVNLDHPAVIFRAELIGEAFFLGI 180
Query: 276 PVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY 333
T +SLH+R ++ LK +IA ++ LA P G F+DP CG GTIP+E +L
Sbjct: 181 DTTGDSSLHKRPWRVYDHPAHLKASIANALIELAEP-DGGPFIDPFCGSGTIPIELALRD 239
Query: 334 PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLP 393
+ + K + + N L ++G L+R + ++ + +L VD V++LP
Sbjct: 240 YDGRIIGLEKFRKHLNGARMNAL-SAGVLDR---IEFVLGDATRLSEYVESVDFAVSNLP 295
Query: 394 FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQAL 440
+G ++GSKS LY F E+ K++ R + +T++++ + +A+
Sbjct: 296 YGLKIGSKSAIPKLYMDFFGELAKVLEK---RGVFITTEKRAIERAI 339
>gi|374636173|ref|ZP_09707753.1| rRNA (guanine-N(2)-)-methyltransferase [Methanotorris formicicus
Mc-S-70]
gi|373559856|gb|EHP86137.1| rRNA (guanine-N(2)-)-methyltransferase [Methanotorris formicicus
Mc-S-70]
Length = 322
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 128/287 (44%), Gaps = 42/287 (14%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTY------FWLVDLDDYDIDINLQIRYNEAYV 273
F + RVGKH TS++ + G + D Y V+LD+ D+ I + + NE +
Sbjct: 36 FAIRPLRVGKHNFTSVDVGKVAGQAVIDAYKNAKNIGLKVNLDNPDVIIRVDVILNELII 95
Query: 274 GLPVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
G+ T LH+R +N L +IA +V+L++ + LDPMCG GTI +E ++
Sbjct: 96 GIDTTGDEGLHKRGYRAYNHPAHLNASIASALVKLSNWKDDGILLDPMCGSGTILIEGAM 155
Query: 332 ------------SYPHTFFVCGDI----------NEKLV--------LKTQANVLHNSGN 361
+ DI NEK++ K + N+ N
Sbjct: 156 IKRNIPPGKFRDDFAFIKLFGRDILEGIKSQIVENEKILKLYGIEKFKKHIEGAVKNAEN 215
Query: 362 LNRELKVSPLVCNVRQL-CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVR 420
+ ++ + + +L VD ++T+ P+G R+G K LY FL + KI
Sbjct: 216 VGVADTINFIEGDATELEKIGLKEVDVVITNPPYGIRIGGKRMVRNLYNNFLNSLKKIAY 275
Query: 421 PQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFIL 467
Q R +++T++ K L A + +K +++ K+ G+ + VF+L
Sbjct: 276 NQ-SRIVIITAEDKILRNAA--INNNYKIKEEFKVMYGGLDTIVFVL 319
>gi|18313912|ref|NP_560579.1| hypothetical protein PAE3215 [Pyrobaculum aerophilum str. IM2]
gi|18161481|gb|AAL64761.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
Length = 330
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 18/230 (7%)
Query: 185 GDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGK 244
G+ L E+ + +S + + P + V RVG+H TS + E+ G
Sbjct: 62 GEGYATTLGEV-VELAAASLPRALRYLTPHTTV---GVRSERVGRHDFTSRDVEKEVGKW 117
Query: 245 LNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLH-RRNIVEFNITTLKPTIAYNM 303
F + L D D+++N+ + N + + V + SL RR V + +L P IA M
Sbjct: 118 FKAKGF-TISLVDPDVEVNVDVVENYVAIWITVAKKSLKDRRWRVYEHYASLNPIIANAM 176
Query: 304 VRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLN 363
RLA P+PG+ D CGGGTI E + YPH ++C DI+ LK L N+ +L
Sbjct: 177 ARLAKPLPGETICDLTCGGGTIAAEAAELYPHARYICVDIS----LKHVKGALLNTRHLP 232
Query: 364 RELKVSPLVCNVRQL--CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLF 411
+V L + +L +P C D + + P+G R+ K LYRL
Sbjct: 233 ---QVDVLWFDSTKLHRVARPIC-DKYIFNPPYGFRIPGKIGK--LYRLL 276
>gi|212224822|ref|YP_002308058.1| N6-adenine-specific DNA methylase [Thermococcus onnurineus NA1]
gi|212009779|gb|ACJ17161.1| Hypothetical N6-adenine-specific DNA methylase [Thermococcus
onnurineus NA1]
Length = 365
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 115/238 (48%), Gaps = 18/238 (7%)
Query: 213 PEENLLK----FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWL----VDLDDYDIDINL 264
P E +K F V R G+H +TS++ + G + D V+LD +
Sbjct: 110 PVEKYIKVSESFAVRSFRKGEHKITSVDIAKTVGKAIFDRLSRYATPKVNLDHPTVIFRA 169
Query: 265 QIRYNEAYVGLPVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGG 322
++ + ++G+ T +SLH+R ++ LK +IA ++ LA P G F+DP CG
Sbjct: 170 ELIGDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANALIELAEP-DGGSFIDPFCGS 228
Query: 323 GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP 382
GTIP+E +L + + K + + N L +G +R + ++ + +L
Sbjct: 229 GTIPIELALGGYGGKIIGLEKYRKHLRGAEMNAL-AAGVYDR---IDFILGDATRLSEYV 284
Query: 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQAL 440
D V++LP+G ++G KS LY F E+ K++ R + +T++++ + +A+
Sbjct: 285 ESADFAVSNLPYGLKIGRKSMIPKLYMQFFAELAKVLEK---RGVFITTEKRAIEKAI 339
>gi|284031884|ref|YP_003381815.1| putative RNA methylase [Kribbella flavida DSM 17836]
gi|283811177|gb|ADB33016.1| putative RNA methylase [Kribbella flavida DSM 17836]
Length = 328
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 117/275 (42%), Gaps = 23/275 (8%)
Query: 196 DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDL 255
D ++ S E L+FR+ + A L + WL D
Sbjct: 72 DTTAVLRSATSGVTSALRSETPLRFRIA---------PATPDHDALNVALVNELGWLEDP 122
Query: 256 DDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVF 315
D+ ++ EA +G R + + ++ KP +A + RLA PG
Sbjct: 123 GDWTVNFVGGPNGWEAEIGPFHWSRRFGRLDRLPWST---KPVVAEVLTRLAKLRPGHRV 179
Query: 316 LDPMCGGGTIPVECSLSYPHTFFVCG-DINEKLVLKTQANVLHNSGNLNRELKVSPL-VC 373
LDP CG GT+ S + + G D++ + + AN L+R + L V
Sbjct: 180 LDPFCGTGTLLAAASAAVGAPVILLGSDLDPRAIALAGAN-------LSRLAIPADLPVA 232
Query: 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433
+ L VD ++ +LPFGK VGS + N LY L EI +++ P+ GRA+LLT D+
Sbjct: 233 SAESLDHAEHSVDRVIANLPFGKLVGSHAGNAKLYPAALREIARLL-PRSGRAVLLTDDK 291
Query: 434 KHLIQALHITSALWKCRKQIKINMSGMKSFVFILN 468
+ A+ T L R+++ + SG+ ++L
Sbjct: 292 RLFEDAVARTRGLKIVRRRV-LGDSGVTPTAYVLT 325
>gi|94985682|ref|YP_605046.1| RNA methylase [Deinococcus geothermalis DSM 11300]
gi|94555963|gb|ABF45877.1| putative RNA methylase [Deinococcus geothermalis DSM 11300]
Length = 357
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 8/175 (4%)
Query: 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN 354
L TIAY + +LA D +PM G GT+ VE +L P+ V D+N + V +AN
Sbjct: 190 LNATIAYALHKLAGQRDEDRIFNPMSGSGTLLVERALLGPYAAMVGVDLNPEAVACARAN 249
Query: 355 VLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIE 414
LH + R+++V+ + P D IV+DLP+G VG+ +N LY FL E
Sbjct: 250 -LHAA---KRDVEVA--CVDALHTGLPPRSFDLIVSDLPWGDAVGTHGDNAALYPAFLGE 303
Query: 415 IGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNR 469
+ +++ Q GR ++LT + + L + + W R+ ++ G ++L++
Sbjct: 304 MHRLLSRQ-GRLVVLTHELR-LFERVLREQERWYARELFQVYSGGHHPKAYLLSK 356
>gi|390961194|ref|YP_006425028.1| hypothetical protein CL1_1031 [Thermococcus sp. CL1]
gi|390519502|gb|AFL95234.1| hypothetical protein CL1_1031 [Thermococcus sp. CL1]
Length = 365
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 20/266 (7%)
Query: 213 PEENLLK----FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWL----VDLDDYDIDINL 264
P E +K F V R G+H+VTS++ R G + D V+LD +
Sbjct: 110 PVERFVKVSESFAVRSFRKGEHSVTSVDIARTVGKAVFDRLSRFGTPRVNLDHPAVIFRA 169
Query: 265 QIRYNEAYVGLPVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGG 322
++ + ++G+ T +SLH+R ++ LK +IA ++ LA P G F+DP CG
Sbjct: 170 ELIGDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANALIELAKP-DGGSFIDPFCGS 228
Query: 323 GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP 382
GTIP+E +L + + K + + N L +G R + ++ + +L
Sbjct: 229 GTIPIELALRGYDGRIIGLEKYRKHLRGAEMNAL-AAGVSER---IDFVLGDATRLSEYV 284
Query: 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHI 442
VD V++LP+G ++G K LY F E+ K++ R + +T++++ + +A I
Sbjct: 285 ESVDFAVSNLPYGLKIGRKGMIPGLYMDFFSELSKVLEK---RGVFITTEKRAIERA--I 339
Query: 443 TSALWKCRKQIKINMSGMKSFVFILN 468
++ R I G+ +++
Sbjct: 340 AENGFEIRHHRLIGHGGLTVHTYVVE 365
>gi|124028493|ref|YP_001013813.1| hypothetical protein Hbut_1654 [Hyperthermus butylicus DSM 5456]
gi|123979187|gb|ABM81468.1| conserved archaeal protein [Hyperthermus butylicus DSM 5456]
Length = 296
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 95/187 (50%), Gaps = 12/187 (6%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLND---TYFWL---VDLDDYDIDINLQIRYNEAYV 273
F V R G H TS++ R G + D + + + VDLD + + +++ + V
Sbjct: 108 FAVRAERAGTHEYTSLDIARVAGDAVIDAVKSRYGVRPPVDLDYPAVVVAVEVIEDNIMV 167
Query: 274 GLPVT-QTSLHRRNIVEFN-ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
G+ + + S HRR ++ LKPT+AY M+ L+ GD +DPMCGGGTI +E +
Sbjct: 168 GIDIGGELSWHRRGYRIYDHPAALKPTLAYAMLLLSGAADGDTVMDPMCGGGTIAIEAAY 227
Query: 332 SYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTD 391
+ + +C D + + + + VL N+ E ++ +V + +L + VD +V++
Sbjct: 228 IFEDSRIICMDKSRRHI---EGAVL-NARAAMVEKRIEFIVGDATKLRRYVSSVDVLVSN 283
Query: 392 LPFGKRV 398
P+G R
Sbjct: 284 PPYGIRA 290
>gi|284162555|ref|YP_003401178.1| RNA methylase [Archaeoglobus profundus DSM 5631]
gi|284012552|gb|ADB58505.1| putative RNA methylase [Archaeoglobus profundus DSM 5631]
Length = 369
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 133/297 (44%), Gaps = 49/297 (16%)
Query: 209 NFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYF------WLVDLDDYDIDI 262
+F P ++ F + RVG H TS++ R G + D+Y V+LD+ D+ I
Sbjct: 83 SFIKPNQS---FAIRPLRVGNHDFTSLDVGRVAGQAVIDSYMESGGVRLKVNLDEPDVII 139
Query: 263 NLQIRYNEAYVGLPVT-QTSLHRRNIVEFN-ITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
+ + +E YVGL T +LHRR ++ L P IA +V L+ ++ LDPMC
Sbjct: 140 RVDVINDEVYVGLDTTGDIALHRRGYRVYDHPAPLNPAIASALVMLSGWKCDEILLDPMC 199
Query: 321 GGGTIPVECSLSY----PHTF---FVCGDINEKLVLK------TQANVLHNSGNLNR--- 364
G GTI +E ++ P F I K +L+ T+++V N + R
Sbjct: 200 GSGTILIESAMMGRNIPPQKLRDDFQFVKIWGKEILEDVKKYVTESDVDLNLVGIERFRK 259
Query: 365 ---ELKVSPLVCNVR-----------QLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRL 410
K++ V V +LC K A D +VT+ P+G R+ K LY
Sbjct: 260 HLKGAKINSEVAGVADTIDYVQGDATKLCLKTA--DVVVTNPPYGLRIARKGMIEELYEG 317
Query: 411 FLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFIL 467
FL + + + R +++T++ + L + + + + +K G+ + VF+L
Sbjct: 318 FL----RSAKGIVDRIVVITAEYRILKEKAEALGYVIEEERLVK--YGGLDTKVFVL 368
>gi|147920406|ref|YP_685819.1| putative RNA methyltransferase [Methanocella arvoryzae MRE50]
gi|110621215|emb|CAJ36493.1| putative RNA methyltransferase [Methanocella arvoryzae MRE50]
Length = 350
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 120/252 (47%), Gaps = 18/252 (7%)
Query: 222 VTCNRVGKHTVTSMESERAFGGKLNDTY-FWLVDLDDYDIDINLQIRYNEAYVGLPVTQT 280
V+ +R GKHT + ++ A L F ++ +D+ + + A++ + +T
Sbjct: 114 VSGSRTGKHTYSRYQAADALLDALVRVLGFRRGSVEAHDLHFRIDVEGGSAFLHVKLTPA 173
Query: 281 SL-HRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFV 339
+ +R +F LK ++A+ MV ++ P P D+FLDP CG GTI E + S +
Sbjct: 174 TFRYRGQEKQFLSAALKASVAHAMVLISMPRPDDIFLDPFCGSGTILAERA-SCEAKAII 232
Query: 340 CGDIN-EKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRV 398
DI+ E+L + Q NL +++ + R V+ IV++LP+GK++
Sbjct: 233 GSDISPERLEIARQ--------NLPGSIRIDHR--DARHTGLPSGSVNKIVSNLPWGKQI 282
Query: 399 GSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMS 458
+ LY FL E +++ P G +LLT + + +A S K+ +++
Sbjct: 283 -EVGDVDQLYVEFLAEAKRLLAPG-GLMVLLTDQEEAITRA--AESCGLHIEKRCTLSLH 338
Query: 459 GMKSFVFILNRT 470
G+ ++++ ++
Sbjct: 339 GLHPSIYLIKKS 350
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 8 STAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKEL 67
S A++ +QI + AT V G EDV E Q K G +L + G++FF D + E++ L
Sbjct: 5 SRAENPNEQIYM-ATTVPGIEDVAAGEMQSKLGGLKVLTRKRGKIFFRFD-RSYEELFSL 62
Query: 68 RGIDNILFIIATFE 81
R +DN+ + + +FE
Sbjct: 63 RCVDNLYYYLGSFE 76
>gi|313243216|emb|CBY39873.1| unnamed protein product [Oikopleura dioica]
Length = 292
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 121/288 (42%), Gaps = 41/288 (14%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
A +E ++ I T+ G E + E KFG + ++ G++ F + + + +LR
Sbjct: 41 ANEEENKMRIMVTIPGGLERLSCIELAAKFGNESDILLRNGKIHFEVGKNKLSDIHKLRS 100
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ IA + F F +EE ++ L D+A +IDW IW
Sbjct: 101 VDNLYLNIADVK-FDFEEHNSEEK---------MRAALFDLAE------KIDWSFVENIW 144
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQN 189
+ + F + R I KE E GD+
Sbjct: 145 M-----------ANQPFVRKRSSKRTSSKSSASKAIFKEID------------ENGDIVA 181
Query: 190 QELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGK-HTVTSMESERAFGGKLNDT 248
++ D + S +QK N + ++FR + NR+GK +TS+ FGG + DT
Sbjct: 182 KKHCR-DFAAATFSLDQKVLKNNLKREDIRFRCSSNRIGKKQCITSVLCANIFGGFVMDT 240
Query: 249 YFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLK 296
W +L +++ + + + + L +T SLHRRN+V F ITTL+
Sbjct: 241 ANWQFNLTEFNCHLMVVMMGKSIQIYLQLTNESLHRRNVVHFGITTLR 288
>gi|315231653|ref|YP_004072089.1| N6-adenine-specific RNA methylase [Thermococcus barophilus MP]
gi|315184681|gb|ADT84866.1| N6-adenine-specific RNA methylase [Thermococcus barophilus MP]
Length = 365
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 116/241 (48%), Gaps = 18/241 (7%)
Query: 210 FTNPEENLLK----FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWL----VDLDDYDID 261
++ P EN +K F V R G+H TS++ + G + D V+LD +
Sbjct: 107 YSLPIENYVKITESFAVRSFRKGEHEFTSVDIAKTVGSAIYDRLSRYGKPKVNLDHPSVI 166
Query: 262 INLQIRYNEAYVGLPVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPM 319
++ + ++G+ T +SLH+R ++ LK +IA M LA + G +DPM
Sbjct: 167 FRAELIDDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANAMTELAE-VDGGSVIDPM 225
Query: 320 CGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC 379
CG GTI +E +L + + +K + + N L +G L+R + + + +L
Sbjct: 226 CGSGTILIELALRGYEGRIIGIEKYKKHLRGARMNAL-AAGVLDR---IEFIQGDATKLT 281
Query: 380 FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQA 439
VD +++LP+G ++G KS LY F E+ K++ R + LT+++K + +A
Sbjct: 282 QYADSVDFAISNLPYGLKIGKKSLIPKLYMEFFSELSKVLEK---RGVFLTTEKKAIEEA 338
Query: 440 L 440
Sbjct: 339 F 339
>gi|159900086|ref|YP_001546333.1| RNA methylase [Herpetosiphon aurantiacus DSM 785]
gi|159893125|gb|ABX06205.1| putative RNA methylase [Herpetosiphon aurantiacus DSM 785]
Length = 430
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 115/257 (44%), Gaps = 13/257 (5%)
Query: 217 LLKFRVTCNRVGKHTVTSMESERAFGGKLNDTY--FWLVDLDDYDIDINLQIRYNEAYVG 274
+ FRV GK A + D + W + ++ D+++ + + +E V
Sbjct: 180 MTSFRVVTRVTGKQDFARKAVGIAVADAVRDNWPGRWKLVEEEADVEMWVTLFGSEIVVA 239
Query: 275 LPVTQTSL-HRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY 333
+ ++ + HR V L+P IA MVRL++P P DVFLD M G GTI E +
Sbjct: 240 IRLSTGGMRHRIQRVVDRPAALRPAIAAAMVRLSNPQPTDVFLDAMAGTGTIIAERAAVG 299
Query: 334 PHTFFVCGDINEKLVLKTQANVLHNSGNLN-RELKVSPLVCNVRQLCFKPACVDGIVTDL 392
P + GD + + V N+ G+L R L + L F+P ++ +VT+L
Sbjct: 300 PFERLIAGDKSREAVKALSRNLASVGGDLAIRRLDAT-------DLPFQPGEINKLVTNL 352
Query: 393 PFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQ 452
PFGK+V + LY E +IV P G + L ++ L + ++ T L + R
Sbjct: 353 PFGKQVNNIDELHQLYSGVCAEWARIVAPG-GMIVALAAEIDVLREKINATPEL-RVRGT 410
Query: 453 IKINMSGMKSFVFILNR 469
I + G + + L R
Sbjct: 411 FPIAVLGQTATIVQLER 427
>gi|315426590|dbj|BAJ48219.1| conserved hypothetical protein [Candidatus Caldiarchaeum
subterraneum]
gi|343485342|dbj|BAJ50996.1| conserved hypothetical protein [Candidatus Caldiarchaeum
subterraneum]
Length = 377
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 219 KFRVTCNRVGKHTVTSMESERAFGGKLNDTYF------WLVDLDDYDIDINLQIRYNEAY 272
F V RVG H TS++ A G + D+Y VDL++ DI++ +R E
Sbjct: 89 SFAVRAERVGLHVFTSLDIAAAVGKAVIDSYRASTGVRLRVDLNNPDIEVYAILRNTELL 148
Query: 273 VGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
+G+ T SLHRR F+ L PT+A +VRL+ V LDP G GTIP+E +L
Sbjct: 149 LGVNTTGESLHRRFYRRGFHRAALSPTVANTLVRLSGWRRHMVLLDPFTGSGTIPLETAL 208
>gi|242399935|ref|YP_002995360.1| N6-adenine-specific DNA methylase [Thermococcus sibiricus MM 739]
gi|242266329|gb|ACS91011.1| Predicted N6-adenine-specific DNA methylase [Thermococcus sibiricus
MM 739]
Length = 365
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 14/227 (6%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWL----VDLDDYDIDINLQIRYNEAYVGL 275
F V R G+H TS++ + G + D V+LD + ++ + ++G+
Sbjct: 121 FAVRGFRKGEHEFTSIDVAKTVGSAIYDKLSKFGTPKVNLDHPSVIFRAEVINDVFFLGI 180
Query: 276 PVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY 333
T +SLH+R ++ LK +IA M+ LA G V LDPMCG GTI +E +L
Sbjct: 181 DTTGDSSLHKRPWRVYDHPAHLKASIANAMIELAELDEGSV-LDPMCGSGTILIELALRG 239
Query: 334 PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLP 393
+ + +K + N L +G L+ K+ + + +L VD ++++LP
Sbjct: 240 YEGKIIGIEKYKKHLKGAMMNAL-AAGVLD---KIDLIQGDATRLSHYLDSVDFVISNLP 295
Query: 394 FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQAL 440
+G ++G K LY F E+ KI+ R + LT+++K + +A
Sbjct: 296 YGLKIGKKKLIPELYMKFFAELSKILGK---RGVFLTTEKKAIEKAF 339
>gi|409096431|ref|ZP_11216455.1| N6-adenine-specific DNA methylase [Thermococcus zilligii AN1]
Length = 365
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 134/301 (44%), Gaps = 30/301 (9%)
Query: 161 NEINIKKESSCETEPQVNNVQIEKGDLQNQELKEID---INSMCSSQNQKT-----NFTN 212
E + E E E V E+ L ++ + E+ +C + +K F
Sbjct: 48 GEAFYRDEKGRERELSVATYLNERSRLLHRVIVEVAGERFEGICEDEPEKALSRIEGFVA 107
Query: 213 --PEENLLK----FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWL----VDLDDYDIDI 262
P E +K F V R G+H +TS++ + G + + V+LD +
Sbjct: 108 SLPVERFVKVSESFAVRPFRKGEHRITSVDIAKTVGKAIFERLERFGKPKVNLDHPSVIF 167
Query: 263 NLQIRYNEAYVGLPVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMC 320
++ ++G+ T +SLHRR ++ LK +IA ++ L P G F+DP C
Sbjct: 168 RAELVGESFFLGIDTTGDSSLHRRPWRVYDHPAHLKASIANALIELVKP-DGGSFIDPFC 226
Query: 321 GGGTIPVECSL-SYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC 379
G GTIP+E +L YP +C + K +L + N L SG +R + L+ + +L
Sbjct: 227 GSGTIPIELALRGYPGR-IICLEKYRKHLLGAEMNAL-ASGVHDR---IEFLLGDATRLG 281
Query: 380 FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQA 439
VD + P+G ++G K LY F E+ K++ R + +T+++K + +A
Sbjct: 282 EYFDSVDFAAGNPPYGLKIGRKDMIPELYMGFFGELAKVLEK---RGVFITTEKKAMEEA 338
Query: 440 L 440
+
Sbjct: 339 I 339
>gi|261402305|ref|YP_003246529.1| putative RNA methylase [Methanocaldococcus vulcanius M7]
gi|261369298|gb|ACX72047.1| putative RNA methylase [Methanocaldococcus vulcanius M7]
Length = 381
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 128/294 (43%), Gaps = 52/294 (17%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTY------FWLVDLDDYDIDINLQIRYNEAYV 273
F + RVG H TS++ R G L ++Y V+L++ DI + +++ ++E V
Sbjct: 94 FAIRPLRVGTHNFTSIDIGRVAGEALINSYKRDKNVRLKVNLNEPDIIVRVEVIFDEVIV 153
Query: 274 GLPVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
GL T +L +R FN L TIA +++ L+ + LDPMCG GTIP+E +L
Sbjct: 154 GLDTTGDIALDKRGYRVFNHPAHLNATIASSLIYLSDWKDEETLLDPMCGSGTIPIEGAL 213
Query: 332 -------------SYPHTF---FVCG---------------------DINEKLVLKTQAN 354
Y F F G D NEK +L N
Sbjct: 214 IKRNIPPGKFREKKYGFKFVNIFGYGLLEEIKKSILENEELYSIYGIDKNEKYILGAVEN 273
Query: 355 VLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIE 414
++G + +S + + ++ +D I+ + P+G R+GSK LY FL+
Sbjct: 274 A-RSAGVFD---TISLSIGDATKMEENFKDIDVIIANPPYGIRMGSKRGVKKLYEKFLLS 329
Query: 415 IGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILN 468
KI+ R +++T++ K +A + + + + G+ + VFI++
Sbjct: 330 AKKIMHDS-SRMVVITAEDKLFREA--VVRQNFNIMDEFAVMFGGLLTKVFIIS 380
>gi|57641798|ref|YP_184276.1| N6-adenine-specific DNA methylase [Thermococcus kodakarensis KOD1]
gi|57160122|dbj|BAD86052.1| predicted N6-adenine-specific DNA methylase [Thermococcus
kodakarensis KOD1]
Length = 365
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 115/238 (48%), Gaps = 18/238 (7%)
Query: 213 PEENLLK----FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWL----VDLDDYDIDINL 264
P E +K F V R G+H +TS+E + G + + V+LD +
Sbjct: 110 PVERFVKVSESFAVRPFRKGEHRITSVEIAKTVGEAIFERLSRFGSPKVNLDHPTVIFRA 169
Query: 265 QIRYNEAYVGLPVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGG 322
++ ++G+ T +SLH+R ++ LK +IA ++ LA P G F+DP CG
Sbjct: 170 ELVGEVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANALIELAEP-NGGSFIDPFCGS 228
Query: 323 GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP 382
GTI +E +L + + K + + N L ++G L+ K+ + + +L
Sbjct: 229 GTILIELALRGYKGRIIGLEKYRKHIRGAEMNAL-SAGVLD---KIEFIQGDATKLSQYV 284
Query: 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQAL 440
VD V++LP+G ++G KS LY F E+ K++ R + +T+++K + +A+
Sbjct: 285 ESVDFAVSNLPYGLKIGRKSMIPRLYMAFFSELSKVLEK---RGVFITTEKKAIERAI 339
>gi|327310664|ref|YP_004337561.1| putative RNA methylase [Thermoproteus uzoniensis 768-20]
gi|326947143|gb|AEA12249.1| putative RNA methylase [Thermoproteus uzoniensis 768-20]
Length = 329
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 90/216 (41%), Gaps = 10/216 (4%)
Query: 222 VTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTS 281
V C R G H TS + E A G L + + L D D+++N+ + + YV L + S
Sbjct: 95 VACERAGTHPFTSRDVESAVGSLLKEAGA-TISLVDPDLELNVDVVGDAYYVWLTSARRS 153
Query: 282 LHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVC 340
L R + + +L P +AY M RL G+ D CGGGTI +E S S +C
Sbjct: 154 LKDRPYRRYQHYASLNPIVAYAMARLVRLRDGETLCDLTCGGGTICLEAS-SVARVRCIC 212
Query: 341 GDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGS 400
DI+ LK L N + V +P C D + P+G R+
Sbjct: 213 VDIS----LKHLRGALENFSAAGADADVLWFDSTKLHRALRPIC-DAFAFNPPYGVRI-- 265
Query: 401 KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHL 436
+N LYR + + RP A++ R L
Sbjct: 266 PANVHKLYRGLARAVELLARPGARVAVVTPRWRAFL 301
>gi|167525980|ref|XP_001747324.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774159|gb|EDQ87791.1| predicted protein [Monosiga brevicollis MX1]
Length = 668
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 90/188 (47%), Gaps = 8/188 (4%)
Query: 251 WLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRR-NIVEFNITTLKPTIAYNMVRLASP 309
W ++D + +++ N + + T L +R ++VE L+ + M LA
Sbjct: 238 WQPVRSEHDYTLFVRLGNNRVLAAINLHATRLSQRTDVVEEG---LRAGVGVTMALLARL 294
Query: 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369
PGD+ +DPM G G++ E + +P ++ D+ + + N + + ++ +
Sbjct: 295 EPGDIVVDPMAGRGSLLAEAARMFPDAHYLGMDMTNNQLRRMAQNFHVSRSGASFDVLTA 354
Query: 370 PLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429
+ N C +P VD I+ DLP+G+ GS+ N LY L + ++R + GRA+ +
Sbjct: 355 SVTANP---CLRPGSVDAILCDLPYGRMYGSQEANRELYPRALATMASLLR-KGGRAVFI 410
Query: 430 TSDRKHLI 437
T+ + ++
Sbjct: 411 TAKDQQIL 418
>gi|116754313|ref|YP_843431.1| putative RNA methylase [Methanosaeta thermophila PT]
gi|116665764|gb|ABK14791.1| N2-methylguanosine tRNA methyltransferase [Methanosaeta thermophila
PT]
Length = 346
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 117/241 (48%), Gaps = 22/241 (9%)
Query: 201 CSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDI 260
S +N + + + L++R+ +R+G+ V S + ER G++ + + DL++ ++
Sbjct: 82 ASPENIEKALRSLDLPRLRYRMRASRLGEGFVKSHDLER-MAGRVLHSMGYRADLENPEM 140
Query: 261 DINLQIRYNEAYVGLPVTQTSL----HRRNIVE--FNITTLKPTIAYNMVRLASPIPGDV 314
DI I ++ G V + RR ++ F L P +A +V + PG++
Sbjct: 141 DIRAIISRSKVVFGYEVARPDRGGFERRRPHLKPFFYPGVLMPRMARALVNITMVRPGEL 200
Query: 315 FLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374
LDP G G I VE L V D+ EKL +AN+ +L ++ +
Sbjct: 201 LLDPFSGTGGILVEACLIGVRGAGV--DVQEKLNRGARANLEGLDADL--------ILGD 250
Query: 375 VRQLCFKPACVDGIVTDLPFGKR--VGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432
R L FK A VD IV+D P+G+ + ++S + +L R F E+ +++ + GR ++ +D
Sbjct: 251 ARCLPFKDASVDAIVSDTPYGRSAVIKARSKDEILSRSFE-EMFRVL--KAGRRAVIVTD 307
Query: 433 R 433
R
Sbjct: 308 R 308
>gi|315425042|dbj|BAJ46715.1| hypothetical conserved protein [Candidatus Caldiarchaeum
subterraneum]
Length = 377
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 219 KFRVTCNRVGKHTVTSMESERAFGGKLNDTYF------WLVDLDDYDIDINLQIRYNEAY 272
F V RVG H TS++ A G + D+Y VDL++ DI++ +R E
Sbjct: 89 SFAVRAERVGLHVFTSLDIAAAVGKAVIDSYRASTGVRLRVDLNNPDIEVYGILRNTELL 148
Query: 273 VGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
+G+ T SLHRR F+ L PT+A +VRL+ V LDP G GTIP+E +L
Sbjct: 149 LGVNTTGESLHRRFYRRGFHRAALSPTVANTLVRLSGWRRHMVLLDPFTGSGTIPLETAL 208
>gi|442759235|gb|JAA71776.1| Putative thumpd3 protein [Ixodes ricinus]
Length = 185
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 93/233 (39%), Gaps = 78/233 (33%)
Query: 19 IEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIA 78
IEATVVTG E + +EC K G + GR+FF + + + +V +L+GIDN+ ++
Sbjct: 23 IEATVVTGLEHIAKDECWSKLGAQPETAR--GRIFFELPVDRVGEVWKLQGIDNLFVVLD 80
Query: 79 TFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNGV 138
TF++ + L K + + V ++ W +E+W+++ GV
Sbjct: 81 TFKD-----------------NPLPASKDDLTPALTSLVDKVHWATGLEVWRRLVG--GV 121
Query: 139 LYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQELKEIDIN 198
S+E F + +++ E +P
Sbjct: 122 DKFSLEDFFR-----------------QRDGGGEGDP----------------------- 141
Query: 199 SMCSSQNQKTNFTNPEENLLKFRVTCNRVGK-HTVTSMESERAFGGKLNDTYF 250
E KFRVTCNR G+ H TSME+ FGG +ND +
Sbjct: 142 ----------------ERRPKFRVTCNRAGQAHKFTSMEAAAIFGGAVNDAFL 178
>gi|256810931|ref|YP_003128300.1| putative RNA methylase [Methanocaldococcus fervens AG86]
gi|256794131|gb|ACV24800.1| putative RNA methylase [Methanocaldococcus fervens AG86]
Length = 381
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 131/289 (45%), Gaps = 44/289 (15%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTY------FWLVDLDDYDIDINLQIRYNEAYV 273
F + R G+H TS++ R G + +Y V+LD+ D+ + +++ ++E V
Sbjct: 94 FAIRPLRAGEHNFTSIDIGRVAGEAVIKSYQKDKNVRLKVNLDEPDVIVRVEVIFDELIV 153
Query: 274 GLPVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
G+ T +L +R FN + TIA +++ L+ ++FLDPMCG GTIP+E +L
Sbjct: 154 GIDTTGDVALDKRGYRVFNHPAHINATIASSLIYLSDWKDDELFLDPMCGSGTIPIEGAL 213
Query: 332 ---SYPHTFFV---CG----DI-NEKLVLKTQANVLHNSGNLN--------------REL 366
+ P F CG DI +L+ K + +++ N N E
Sbjct: 214 IKRNVPPGKFREKKCGFKFVDIFGYELLNKIKEDIVENKNKYNIIGLDRNQKYLDGAEEN 273
Query: 367 KVSPLVCNVRQLCFKPA--------CVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKI 418
+ V + + A VD IV + P+G R+GSK LY FL KI
Sbjct: 274 AKNAEVLDTIKFIHGDATKLHEVFDSVDVIVVNPPYGIRMGSKRAVKKLYNEFLSSAKKI 333
Query: 419 VRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFIL 467
+ R I +T++ K +A+ I + L + + + + G+ + VF L
Sbjct: 334 MHGS-SRLIAITAEDKMFKEAI-IKNNL-EIKDEFNVMFGGLMTKVFYL 379
>gi|126459713|ref|YP_001055991.1| RNA methylase [Pyrobaculum calidifontis JCM 11548]
gi|126249434|gb|ABO08525.1| putative RNA methylase [Pyrobaculum calidifontis JCM 11548]
Length = 329
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 100/220 (45%), Gaps = 14/220 (6%)
Query: 222 VTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTS 281
+ RVG H TS + ER G L + ++ L D D++IN+ + V + V + S
Sbjct: 95 IRTERVGAHPFTSRDVEREVGKWLKRRGY-VISLVDPDVEINVDVVEKYVVVWITVAKRS 153
Query: 282 LHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVC 340
L R V + +L P IAY M LA P PG+ D CGGGTIP E + + P ++C
Sbjct: 154 LKDRPWRVYEHYASLNPIIAYAMAMLAKPRPGETVCDLTCGGGTIPAEAAEAAPWARYIC 213
Query: 341 GDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKPACVDGIVTDLPFGKRV 398
DI+ K V AN R +V L + +L +P C D + + P+G R+
Sbjct: 214 VDISLKHVKGAVANT-------RRYPQVDVLWFDSTKLHRAMRPVC-DKYIFNPPYGFRI 265
Query: 399 GSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQ 438
+ LY+L + ++ R + +T K I
Sbjct: 266 PGRVGR--LYKLLGEAMRRLARGPEALYVAITPRHKTFIS 303
>gi|289193171|ref|YP_003459112.1| RNA methylase [Methanocaldococcus sp. FS406-22]
gi|288939621|gb|ADC70376.1| putative RNA methylase [Methanocaldococcus sp. FS406-22]
Length = 381
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 96/387 (24%), Positives = 170/387 (43%), Gaps = 62/387 (16%)
Query: 134 NYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKK-----ESSCETEPQVNNVQ--IEKGD 186
+Y L P +E+ +K N+I K I NEI + E P++N + IE+ +
Sbjct: 2 DYYVTLSPGLEKISK-NEIDEFKGKI-NEIRENRGRIFFSGDLELIPKINYLSRTIERLN 59
Query: 187 --LQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGK 244
L +E+ I ++ + + ++T + F + R G+H TS++ R G
Sbjct: 60 ILLYREEIPNISLDDIYE-RVYDIDWTEWIKEHQSFAIRPLRAGEHNFTSIDIGRVAGEA 118
Query: 245 LNDTY------FWLVDLDDYDIDINLQIRYNEAYVGLPVT-QTSLHRRNIVEFNITT-LK 296
L +Y V+LD+ D+ + +++ ++E VG+ T +L +R FN L
Sbjct: 119 LIKSYQRDKNVRLKVNLDEPDVIVRVEVIFDELIVGIDTTGDVALDKRGYRVFNHPAHLN 178
Query: 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL----SYPHTF------FVCGDI-NE 345
TIA ++ L++ +V LDPMCG GTIP+E +L + P F F DI
Sbjct: 179 ATIASALIYLSNWKDDEVLLDPMCGSGTIPIEGALMKRNTPPGKFREEKYGFKFVDIFGY 238
Query: 346 KLVLKTQANVLHN------------------------SGNLNRELKVSPLVC-NVRQLCF 380
L+ K + ++ N S N+ L +C + +L
Sbjct: 239 GLLDKIKKEIVENKNIYKIIGLDKNQKYLDGAKDNAKSANV---LDTIDFICGDATKLHE 295
Query: 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQAL 440
+ + +D I+ + P+G R+GSK LY FL I+ R I++T++ K +A
Sbjct: 296 RFSSIDVIIANPPYGIRMGSKRAVKKLYNEFLSSAKNIMHGS-SRLIVITAEDKLFKEA- 353
Query: 441 HITSALWKCRKQIKINMSGMKSFVFIL 467
+ ++ + + + G+ + VF L
Sbjct: 354 -VAKNNFEVKDEFNVMFGGLMTKVFYL 379
>gi|386856442|ref|YP_006260619.1| Putative RNA methylase [Deinococcus gobiensis I-0]
gi|379999971|gb|AFD25161.1| Putative RNA methylase [Deinococcus gobiensis I-0]
Length = 367
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 7/175 (4%)
Query: 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN 354
L TIAY +LA D +PMCG GT+ VE +L P V D++ + V ++AN
Sbjct: 199 LNATIAYAAHKLAGQRDEDRIFNPMCGSGTLLVERALLGPSAALVGVDLDAEAVECSRAN 258
Query: 355 VLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIE 414
L +G RE++V+ + + Q D IV DLP+G +GS N LY FL E
Sbjct: 259 -LRAAG---REVEVAQV--DALQTGLPARSFDLIVADLPWGDAIGSHRANAALYPEFLAE 312
Query: 415 IGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNR 469
+++ + GR ++T + + + L + W R+ ++ G ++L++
Sbjct: 313 SHRLLS-RRGRLCVITHEIRLFERLLQEQAGQWHARELFQVYSGGHHPKAYLLHK 366
>gi|339499647|ref|YP_004697682.1| RNA methylase [Spirochaeta caldaria DSM 7334]
gi|338833996|gb|AEJ19174.1| RNA methylase [Spirochaeta caldaria DSM 7334]
Length = 342
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 4/176 (2%)
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353
L P ++ L+ P D+FLDP G G IP+E + P+ GDI+ + V +
Sbjct: 166 ALPPYFCRLLLELSDPQREDIFLDPFMGSGAIPLERARMAPYHMIFTGDIDPEKVQHFKI 225
Query: 354 NVLHNSGNLNRELKVSPLVCNVRQLC-FKPACVDGIVTDLPFGKRVGSKSNNF-LLYRLF 411
+ H R+ + P V + L F+ + IVTD P+G ++N LY F
Sbjct: 226 ILKHKEWEKRRK-TIFPKVLDATTLGQFQQGFITRIVTDPPWGLYEALEANKIRTLYIRF 284
Query: 412 LIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFIL 467
L E +I+ P+ GR +LL S L L ++ I++ +SG K+ V+++
Sbjct: 285 LKESARILAPK-GRMVLLVSATIPLADLLKAAEVPLVIKQGIQVLVSGQKALVYVI 339
>gi|352682266|ref|YP_004892790.1| putative N6-adenine-specific DNA methylase [Thermoproteus tenax Kra
1]
gi|350275065|emb|CCC81712.1| Predicted N6-adenine-specific DNA methylase [Thermoproteus tenax
Kra 1]
Length = 326
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 29/225 (12%)
Query: 222 VTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTS 281
V+C R GKH S + E A G +L + ++L D D+++N+ + + YV + T++S
Sbjct: 94 VSCERAGKHPFKSRDVEAAVG-RLFKEAGYPINLVDPDVEVNVDVVGDAYYVWITSTKSS 152
Query: 282 LHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCG 341
L R + L P +A+ M +LA G+ D CGGGTI +E + + +C
Sbjct: 153 LKDRGRPYQHYAALNPIVAFAMAKLARVKDGETVCDLTCGGGTICLEAARA-ARVRCICV 211
Query: 342 DINEKLVL---------KTQANVL-HNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTD 391
DI+ K + +T A+VL +S L+R ++ VC+V F P
Sbjct: 212 DISLKHLRGALQNFKAEETDADVLWFDSTKLHRAMRP---VCDV--FLFNP--------- 257
Query: 392 LPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHL 436
P+G R+ + + LYR I + R A++ R L
Sbjct: 258 -PYGVRIPADIHK--LYRGLAKSISALARGGARVAVVTPRWRAFL 299
>gi|349859178|gb|AEQ20631.1| putative RNA methylase family UPF0020 protein [uncultured bacterium
CSLF43]
Length = 365
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 91/213 (42%), Gaps = 29/213 (13%)
Query: 234 SMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTS--LHRRNIVEFN 291
S E E A GG D W+ +D+ Y G+P ++ R + V
Sbjct: 145 SEEDEEAAGG---DDELWMFCIDE------------NYYFGIPKQKSGQVAGRSSRVRER 189
Query: 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKT 351
+L P IA +V ASP DV LDP+CG G++ E S P + DI+ + +
Sbjct: 190 EGSLPPPIAAALVFAASPRNDDVVLDPVCGSGSLLAEVSHYAPQASGIGVDIDPQAIEIA 249
Query: 352 QANVLHNSGNLNRELKVSPLVCNVRQLC--FKPACVDGIVTDLPFGKRVGSKSNNFLLYR 409
N+ R V + R L + + +V +LPFG + G + N LYR
Sbjct: 250 SQNL--------RGTAVELFNSDSRHLAEKLRGRGISLVVANLPFGIKYGDRKTNADLYR 301
Query: 410 LFLIEIGKIV--RPQIGRAILLTSDRKHLIQAL 440
L + ++ R RA +LTSD++ L AL
Sbjct: 302 QILEQSFQLSADRSSAWRAAVLTSDQESLSTAL 334
>gi|307594156|ref|YP_003900473.1| putative RNA methylase [Vulcanisaeta distributa DSM 14429]
gi|307549357|gb|ADN49422.1| putative RNA methylase [Vulcanisaeta distributa DSM 14429]
Length = 350
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 108/254 (42%), Gaps = 21/254 (8%)
Query: 222 VTCNRVGKHTVTSMESERAFGGKLNDTYFW-----LVDLDDYDIDINLQIRYNEAYVGLP 276
+ +R G H S ++ G ++++ L +LD+ D+ + L I ++ +GL
Sbjct: 103 IMADRSGDHEFKSPDAAALLGERISEFLMSMGLKSLFNLDNADLTLRLIIDQDKCVLGLS 162
Query: 277 VTQTSLHRRNIVEFN-ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH 335
+T+ L R +FN ++ P +A M R+ SP P D CG GTI +E +L
Sbjct: 163 ITRKPLRNRPYRKFNHPASINPILANAMFRILSPAPSSRICDVTCGSGTIVIEGALMRRD 222
Query: 336 TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT----D 391
F+C DI+ V AN RE V L+ V +PA D + +
Sbjct: 223 VIFLCADIDYGYVNGALANA--------REANVDYLIDFVVMDSTRPAIRDNACSYAIFN 274
Query: 392 LPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRK 451
PFG R+ Y + ++R G +++ + RK L + L + +
Sbjct: 275 PPFGIRIEPLKGIADFYGSLFRALRNVLRD--GSSMVFITVRKSLAKKLLVKYGFRIVSE 332
Query: 452 QIKINMSGMKSFVF 465
++ + G+ S +F
Sbjct: 333 RV-VEQGGIWSSIF 345
>gi|240102260|ref|YP_002958568.1| SAM-dependent RNA methylase [Thermococcus gammatolerans EJ3]
gi|239909813|gb|ACS32704.1| SAM-dependent RNA methylase, putative [Thermococcus gammatolerans
EJ3]
Length = 365
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 115/238 (48%), Gaps = 18/238 (7%)
Query: 213 PEENLLK----FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWL----VDLDDYDIDINL 264
P E +K F V R G+H +TS++ + G + + V+LD +
Sbjct: 110 PVERFVKVSESFAVRSFRRGEHKITSVDIAKTVGKAIFERLERFGTPKVNLDHPAVIFRA 169
Query: 265 QIRYNEAYVGLPVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGG 322
++ ++G+ T +SLH+R ++ LK +IA ++ LA P G F+DP CG
Sbjct: 170 ELIGEVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANALIELAEP-DGGPFIDPFCGS 228
Query: 323 GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP 382
GTIP+E +L + + K + + N L ++G L + ++ + +L
Sbjct: 229 GTIPIELALRGYGGKIIGLEKFRKHLNGAKMNAL-SAGVLE---GIEFILGDATRLSDYV 284
Query: 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQAL 440
VD V++LP+G ++G KS LY F E+ K++ R + +T++++ + +A+
Sbjct: 285 ESVDFAVSNLPYGLKIGRKSAIPKLYMDFFGELAKVLEK---RGVFITTEKRAIERAI 339
>gi|397574073|gb|EJK49013.1| hypothetical protein THAOC_32141 [Thalassiosira oceanica]
Length = 600
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 4/114 (3%)
Query: 220 FRVTCNRVGK-HTVTSMESERAFGGKLNDTYFWL-VDLDDYDIDINLQIRYNEAYVGLPV 277
FR +C+R+G H E ER GG + + Y + D+ +YD+ I + + + VG +
Sbjct: 415 FRTSCDRIGSGHAFNHPEVEREVGGAMVEYYEQIKPDMTNYDVHIRIDVVAKKVIVGTQI 474
Query: 278 TQTSLHR-RNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
+ + R+ + F N T+K +AY MVRLA+ G + DP CG GTI +E
Sbjct: 475 NIDDISKGRHFLRFRNAVTIKSNLAYAMVRLANVPQGGLLCDPFCGSGTILLEA 528
>gi|320335386|ref|YP_004172097.1| RNA methylase [Deinococcus maricopensis DSM 21211]
gi|319756675|gb|ADV68432.1| RNA methylase [Deinococcus maricopensis DSM 21211]
Length = 378
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 8/176 (4%)
Query: 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN 354
L TIA+ M+R+ D +PMCG GT+ +E + P V DI+E+ V + N
Sbjct: 211 LNATIAHAMLRVGGLSERDRIFNPMCGSGTLLIERAGMMPAEALVGVDIDEEAVDCAREN 270
Query: 355 VLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIE 414
+ R+++V+ + L + D I+ DLP+G +GS ++N LY FL E
Sbjct: 271 IR----AARRDIEVAHVDALATGLPAR--SFDLILVDLPWGDAIGSHTSNETLYPAFLAE 324
Query: 415 IGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRT 470
+ ++ + GR ++LT + + L + W+ R+ + G ++L+R
Sbjct: 325 MHRLT-SKHGRMVVLTHELR-LFERTLADQDRWRGREAFQAYSGGHHPRAYLLSRA 378
>gi|15668614|ref|NP_247412.1| hypothetical protein MJ_0438 [Methanocaldococcus jannaschii DSM
2661]
gi|2501584|sp|Q57880.1|TRM14_METJA RecName: Full=tRNA (guanine(6)-N2)-methyltransferase; AltName:
Full=tRNA m2G6-methyltransferase
gi|1591142|gb|AAB98426.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 381
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 129/289 (44%), Gaps = 44/289 (15%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTY------FWLVDLDDYDIDINLQIRYNEAYV 273
F + R G+H TS++ R G + +Y V+LD+ D+ + +++ ++E V
Sbjct: 94 FAIRPLRAGEHNFTSIDIGRVAGEAVIKSYQRDKNIRLKVNLDEPDVIVRVEVIFDELIV 153
Query: 274 GLPVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
G+ T +L +R FN L TIA ++V L+ ++ LDPMCG GTIP+E +L
Sbjct: 154 GIDTTGDIALDKRGYRVFNHPAHLNATIASSLVYLSDWKDDEMLLDPMCGSGTIPIEGAL 213
Query: 332 SY----PHTF------FVCGDI-NEKLVLKTQANVLHNSG-----NLNRE---------- 365
P F F DI +L+ K + ++ N L++
Sbjct: 214 MKRNIPPGKFRENKYGFKFIDIFGYELLDKIKKEIVENKNIYKIIGLDKNQKYLDGAKDN 273
Query: 366 ------LKVSPLVC-NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKI 418
L +C + +L K D I+ + P+G R+GSK + LY FL +I
Sbjct: 274 AKNAEVLDTIEFICGDATKLHEKFNESDVIIANPPYGIRIGSKRSVKKLYDEFLSSAKEI 333
Query: 419 VRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFIL 467
+ R I++T++ K A I ++ +++ + G+ + VF L
Sbjct: 334 MHGS-SRLIVITAEDKMFKDA--IAKNNFEVKEEFNVMFGGLMTRVFYL 379
>gi|288931907|ref|YP_003435967.1| RNA methylase [Ferroglobus placidus DSM 10642]
gi|288894155|gb|ADC65692.1| putative RNA methylase [Ferroglobus placidus DSM 10642]
Length = 364
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 129/290 (44%), Gaps = 40/290 (13%)
Query: 209 NFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTY---FWL---VDLDDYDIDI 262
+F PE++ F + NRVG+H TS++ R G + D Y F + V+LD+ D+ I
Sbjct: 83 SFIKPEQS---FAIRANRVGEHGFTSIDIAREAGQAVIDRYKEDFGVRLRVNLDEPDVII 139
Query: 263 NLQIRYNEAYVGLPVT-QTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
+ ++ VG+ T +LH+RN + + L PTIA ++VRL+ LDPMC
Sbjct: 140 RCDLVDDDFVVGVDTTGDEALHKRNYRIYQHPAPLNPTIASSLVRLSGWSHNYSLLDPMC 199
Query: 321 GGGTIPVECSL--------------------SYPHTFFVCGDINEKLVLKTQANVLHNSG 360
G GTI +E + P + D+ KL +
Sbjct: 200 GSGTILIEAGMIAKNIPVCKFRENYAYKKLFKLPEPEWEEKDVELKLYGMEKFKKHVEGA 259
Query: 361 NLNRE---LKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGK 417
E + V+ + + R+L +D IVT+ P+G R+ K LY FL K
Sbjct: 260 RKIAEYVGIPVTYIQGDARKLDEYFDSIDFIVTNPPYGLRIARKGIIEDLYSKFLESASK 319
Query: 418 IVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFIL 467
++ ++ +++T+++ A H ++ +++ + G+ VF+L
Sbjct: 320 VLEKKL---VMITAEKN---IARHYAEKFFEIKEERNVMYGGLNCSVFVL 363
>gi|58476718|gb|AAH89870.1| THUMP domain containing 2 [Rattus norvegicus]
Length = 379
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 116/288 (40%), Gaps = 71/288 (24%)
Query: 122 WKKYMEIWKQITNYN--------GVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCET 173
W K + +W+++ +++ G P +++ ND + KK E+ + +S E+
Sbjct: 75 WLKAISLWRKLLDHDTNGEKVSQGDANP-LKRKAGENDSITPKKLKLEEMQVVDKSHGES 133
Query: 174 EPQVNNVQIEKGD--LQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG--K 229
+ +E+G+ + EL+E + + + +PE+ L FR++C G +
Sbjct: 134 QQDQPQGPLEQGETLARTDELQE---QRLHRASETAAHAQSPED--LTFRISCRCSGSIR 188
Query: 230 HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE 289
VT E+ R G L + W DL D++
Sbjct: 189 KVVTGQEAGRVAGLALMRQFGWKADLRKPDLEA--------------------------- 221
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
G + LDPMCG GTI VE + +P F+V D+++ +L
Sbjct: 222 ----------------------GALVLDPMCGLGTILVEAAEEWPDVFYVGADVSDSQLL 259
Query: 350 KTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397
N L +G +R + L +V L VD I++D+PFGK+
Sbjct: 260 GACDN-LKAAGLAHR---IELLKGSVADLPLPAQSVDVIISDIPFGKK 303
>gi|254553439|ref|NP_001012108.2| THUMP domain containing 2 isoform 2 [Rattus norvegicus]
Length = 409
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 117/288 (40%), Gaps = 71/288 (24%)
Query: 122 WKKYMEIWKQITNYN--------GVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCET 173
W K + +W+++ +++ G P +++ ND + KK E+ + +S E+
Sbjct: 105 WLKAISLWRKLLDHDTNGEKVSQGDANP-LKRKAGENDSITPKKLKLEEMQVVDKSHGES 163
Query: 174 EPQVNNVQIEKGD--LQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG--K 229
+ +E+G+ + EL+E ++ + + +PE+ L FR++C G +
Sbjct: 164 QQDQPQGPLEQGETLARTDELQEQRLHR---ASETAAHAQSPED--LTFRISCRCSGSIR 218
Query: 230 HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE 289
VT E+ R G L + W DL D++
Sbjct: 219 KVVTGQEAGRVAGLALMRQFGWKADLRKPDLEA--------------------------- 251
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
G + LDPMCG GTI VE + +P F+V D+++ +L
Sbjct: 252 ----------------------GALVLDPMCGLGTILVEAAEEWPDVFYVGADVSDSQLL 289
Query: 350 KTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397
N L +G +R + L +V L VD I++D+PFGK+
Sbjct: 290 GACDN-LKAAGLAHR---IELLKGSVADLPLPAQSVDVIISDIPFGKK 333
>gi|440804737|gb|ELR25609.1| hypothetical protein ACA1_306340, partial [Acanthamoeba castellanii
str. Neff]
Length = 247
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 114/308 (37%), Gaps = 82/308 (26%)
Query: 22 TVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIATFE 81
TV TG E+ EE K + + ++G+VF +E+V LR +D + +
Sbjct: 13 TVPTGVEEAAREEISAKL-RPAAVHSTMGKVFMET-AAPLEEVTALRAVDRLFLLALHHP 70
Query: 82 NFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLE--IDWKKYMEIWKQITNYNGVL 139
+ + +G+ VA + V+ IDW +++W++ Y+ L
Sbjct: 71 SPNYPAEGSL------------------VAAFKAWVVSETIDWPAILDVWQK--AYHAHL 110
Query: 140 YPS----IEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQELKEI 195
P F Y D
Sbjct: 111 RPPEVAPASGFGYYPD-------------------------------------------- 126
Query: 196 DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHT--VTSMESERAFGGKLNDTYFWLV 253
+ C + + + N + + F V+C R G T +TS + + G L + + W V
Sbjct: 127 ---TPCRRWDSRYAYAN---SGISFAVSCTRTGLRTKSLTSKQIAQHCGDSLVEEFGWKV 180
Query: 254 DLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGD 313
DL+ + I + + VG+P+ ++ + +R + L+ +IAY M R A G
Sbjct: 181 DLEQPALSIAIYATDDHFIVGIPLLESQVAKREHIRGK--GLRCSIAYAMCRAAGVANGS 238
Query: 314 VFLDPMCG 321
V LDPMCG
Sbjct: 239 VILDPMCG 246
>gi|348501434|ref|XP_003438274.1| PREDICTED: THUMP domain-containing protein 2-like [Oreochromis
niloticus]
Length = 569
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 69/136 (50%), Gaps = 12/136 (8%)
Query: 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANV----LHNSGNLNREL 366
PG +DPMCG GTI +E + + F+ DI+E + K N+ L N NL L
Sbjct: 348 PGFRVVDPMCGVGTILIEAAQEHKDACFLGVDIDEAQLQKASENIAFAELENRINL---L 404
Query: 367 KVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA 426
K S LV L A VD ++ DLPFG++ GS+ + L L E+ +++RP
Sbjct: 405 KASSLV-----LPVPSATVDAVICDLPFGRKFGSRIDMAANLPLILTEMERVLRPGGILV 459
Query: 427 ILLTSDRKHLIQALHI 442
+LL+ L++ L I
Sbjct: 460 LLLSPQLSCLLKKLLI 475
>gi|284029483|ref|YP_003379414.1| putative RNA methylase [Kribbella flavida DSM 17836]
gi|283808776|gb|ADB30615.1| putative RNA methylase [Kribbella flavida DSM 17836]
Length = 353
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 10/171 (5%)
Query: 263 NLQIRYNEAYVGLPVTQTSLHRRNIVEFN-ITTLKPTIAYNMVRLASPIPGDVFLDPMCG 321
L + A +GL + LHRR + ++ P +A MVRLA P+ LDP CG
Sbjct: 156 RLTVDGTRALLGLRIGAEPLHRRTYRQITRPGSVHPPVAAAMVRLARPLDRATVLDPCCG 215
Query: 322 GGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381
GTIP+E + + D N V QAN +S + L+ + L
Sbjct: 216 AGTIPIEAASIGRQLSVLGSDRNRDAVGAAQANGAGSS--------IRWLIADAGSLPLA 267
Query: 382 PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432
VD V++ P+ ++V + + F E+ +++RP GRA++L ++
Sbjct: 268 SNSVDLAVSNPPWDRQVPAAGVLARRPQRFWRELHRVLRPD-GRAVVLLTE 317
>gi|325282327|ref|YP_004254868.1| RNA methylase [Deinococcus proteolyticus MRP]
gi|324314136|gb|ADY25251.1| RNA methylase [Deinococcus proteolyticus MRP]
Length = 359
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 9/175 (5%)
Query: 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN 354
L +IAY + LA D +PMCG GT+ VE +L P+ V DI+ V ++N
Sbjct: 193 LNASIAYGALALAGLRASDRIFNPMCGSGTLLVERALMGPYEAMVGVDIDAGAVACARSN 252
Query: 355 VLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIE 414
L +G R+++V+ + + P D I+ DLP+G +G+ N LY FL E
Sbjct: 253 -LKAAG---RDVEVAQV--DALSTGLPPRSFDLILADLPWGDDIGTHGGNAELYPAFLNE 306
Query: 415 IGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNR 469
+ ++ + GR +++T + + + L + W+ R+ ++ G +++L R
Sbjct: 307 MHRLCS-RGGRMVVITHELRLFERVL--ADSPWQGRELAQVYSGGHHPKMYLLTR 358
>gi|15806672|ref|NP_295392.1| hypothetical protein DR_1669 [Deinococcus radiodurans R1]
gi|6459434|gb|AAF11224.1|AE002009_4 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 372
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 9/194 (4%)
Query: 277 VTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH 335
+T L R E N+ L TIAY M +LA D +PM G GT+ +E +L P+
Sbjct: 185 ITPRPLSARAWRECNMGGGLNATIAYAMHKLAGQRDEDRIFNPMSGSGTLLIERALLGPY 244
Query: 336 TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFG 395
V DI+ V + N L +G +V L + F D +++DLP+G
Sbjct: 245 AALVGVDIDPVAVACARTN-LRAAGKEVEVAQVDALHTGLPSRSF-----DLVISDLPWG 298
Query: 396 KRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKI 455
+GS +N LY FL E+ ++ + GR LLT + + L + + + W+ ++ ++
Sbjct: 299 DAIGSHQSNETLYPAFLKEMHRLTS-RRGRLCLLTHELR-LFERVMREQSDWEAKELFQV 356
Query: 456 NMSGMKSFVFILNR 469
G ++L++
Sbjct: 357 YSGGHHPKAYLLHK 370
>gi|148656400|ref|YP_001276605.1| putative RNA methylase [Roseiflexus sp. RS-1]
gi|148568510|gb|ABQ90655.1| putative RNA methylase [Roseiflexus sp. RS-1]
Length = 349
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 5/179 (2%)
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353
L T+A M+RL P D L+ CG GT+ +E P + D +++ + +
Sbjct: 171 ALNATLASVMMRLTRPSASDRVLNLACGSGTLLIERLFLAPARLAIGCDPDQRALQCARR 230
Query: 354 NVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLI 413
N+ + +++ P + L + VD I DLPFG+ +GS +N LY +
Sbjct: 231 NL--EAAGFAPVVRLEPW--DATSLPLETRSVDVICADLPFGQLIGSHRDNEALYPRLIA 286
Query: 414 EIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTAD 472
E ++ P R LLT + + + + + +W + +K+ GM ++++ RT+
Sbjct: 287 EAARVAAPN-ARMCLLTHEVRLIERVFASCTDVWTPVEIVKVRTGGMTPRIYLMRRTSS 344
>gi|429218643|ref|YP_007180287.1| N6-adenine-specific DNA methylase [Deinococcus peraridilitoris DSM
19664]
gi|429129506|gb|AFZ66521.1| putative N6-adenine-specific DNA methylase [Deinococcus
peraridilitoris DSM 19664]
Length = 330
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 7/175 (4%)
Query: 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN 354
L T+A+ M+RL GD +PMCG GT+ +E + V D++E+ + + N
Sbjct: 163 LNATLAHAMLRLGGVRSGDRVFNPMCGSGTLLIERAALGASERLVGADVDERALECARQN 222
Query: 355 VLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIE 414
V + + ++++++ + NV + D IV DLP+G VGS ++N LY FL
Sbjct: 223 V---AVSKHQDIEIGQM--NVVEAELPARAFDLIVADLPWGDAVGSHASNAELYPAFLRA 277
Query: 415 IGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNR 469
+ V + R ++LT + L + L W R+ +++ G +++L +
Sbjct: 278 MAH-VGSKNARLVVLTHEVT-LFERLLQDERRWTLRESMRVYHGGHYPRMYLLTK 330
>gi|443322191|ref|ZP_21051222.1| putative N6-adenine-specific DNA methylase [Gloeocapsa sp. PCC
73106]
gi|442788077|gb|ELR97779.1| putative N6-adenine-specific DNA methylase [Gloeocapsa sp. PCC
73106]
Length = 374
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 93/212 (43%), Gaps = 40/212 (18%)
Query: 235 MESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNIT 293
++ +R GG+ + +D+ D+ IN I + + L + SLHRR +
Sbjct: 117 VDQQREQGGQRSS-----IDIHHPDLLINAHITGDNCILSLDSSGESLHRRGYRPAMGLA 171
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHT----------FFVCGDI 343
LK T+A ++ LA PG F DP+CG GT+P+E +L + F D
Sbjct: 172 PLKETLAAGLLELAQWRPGIAFFDPLCGSGTLPIEATLKALNIAPGLYRERFGFESWSDF 231
Query: 344 NEKLV--LKTQANVLHNS------------GNLNRELKVSPLVCNVRQ----LC-----F 380
+ L L+T+A S N+ ++ + + +C V+ LC
Sbjct: 232 DPDLWQQLRTEAKKSQLSQLRSPIVGSEADSNILKQAQHNAQLCGVQDHIQLLCHNLATV 291
Query: 381 KPACVDG-IVTDLPFGKRVGSKSNNFLLYRLF 411
P C G I+T+ P+GKR+G + LY+L
Sbjct: 292 SPPCDSGIIITNPPYGKRIGEVTELASLYQLL 323
>gi|226355221|ref|YP_002784961.1| N6-adenine-specific DNA methylase; RNA methylase [Deinococcus
deserti VCD115]
gi|226317211|gb|ACO45207.1| putative N6-adenine-specific DNA methylase; putative RNA methylase
[Deinococcus deserti VCD115]
Length = 364
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 8/175 (4%)
Query: 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN 354
L +IAY +LA D +PM G GT+ VE +L P+ V DI+ K V +++N
Sbjct: 197 LNASIAYATHKLAGQRDIDRIFNPMSGSGTLLVERALMGPYDALVGVDIDPKAVECSRSN 256
Query: 355 VLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIE 414
L +G RE++V+ + + D +V DLP+G +G+ N +LY FL E
Sbjct: 257 -LKAAG---REVEVA--MVDALHTGLPARSFDLVVADLPWGDAIGTHGGNEVLYPAFLTE 310
Query: 415 IGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNR 469
+ ++ Q GR ++T + + L + L + W + +++ G V++L +
Sbjct: 311 MHRLTSRQ-GRVAVITHEIR-LFERLLRDQSKWHAHELLQVYSGGHWPKVYLLTK 363
>gi|296109689|ref|YP_003616638.1| RNA methylase [methanocaldococcus infernus ME]
gi|295434503|gb|ADG13674.1| putative RNA methylase [Methanocaldococcus infernus ME]
Length = 378
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 126/290 (43%), Gaps = 46/290 (15%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYF------WLVDLDDYDIDINLQIRYNEAYV 273
F + RVG H TS++ R G L +Y V+LD+ D+ + +++ +NE V
Sbjct: 91 FAIRPLRVGSHNFTSIDIGRVAGEALIKSYLRDKNVRLKVNLDEPDVIVRVELIHNELLV 150
Query: 274 GLPVT-QTSLHRRNIVEFN-ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
GL T +L +R +N + L TIA +++ L + + LDPMCG TI +E +L
Sbjct: 151 GLDTTGDIALDKRGYRVYNHLAHLNSTIAASLIYLGNFREYESLLDPMCGSATILIEGAL 210
Query: 332 -------------SYPHTFF------VCGDINEKLVLKTQANVLHNSG-------NLNRE 365
Y +F + D+ ++ + + +++ R
Sbjct: 211 IRRNIPPGIFRERKYGFSFLNLFGRELLEDVKREVNINYEKYLIYGIDKNPKFLEGAKRN 270
Query: 366 LKVSPLVCNVRQLCFKPAC--------VDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGK 417
L+ S +V + L A VD +V + P+G R+G K LY FL+ + +
Sbjct: 271 LE-SAMVDDTVNLILGDATKIDKIFNEVDLVVVNPPYGIRLGKKRLLRELYNNFLLSVKR 329
Query: 418 IVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFIL 467
++ R I +T++ K +A I A +++ + G+ + V+ L
Sbjct: 330 VMHGN-SRVICITAETKLFEEA--IAKADLTVKEKFNVKFGGLSTKVYYL 376
>gi|432328792|ref|YP_007246936.1| putative N6-adenine-specific DNA methylase [Aciduliprofundum sp.
MAR08-339]
gi|432135501|gb|AGB04770.1| putative N6-adenine-specific DNA methylase [Aciduliprofundum sp.
MAR08-339]
Length = 356
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 94/228 (41%), Gaps = 33/228 (14%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGK-LNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVT 278
F V R GKH TSM+ G + L V+LDD D+ + + + + T
Sbjct: 86 FAVRSKRKGKHEFTSMDINAVVGEEILKKCPEAKVNLDDPDVTFLTWLEDEDFFFTMDTT 145
Query: 279 QTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTF 337
SLHRR V + + P +A M+R A G+ +DP CG GTI +E +Y
Sbjct: 146 GESLHRRGYRVYQHPAPINPVLASLMLRFAG-WSGERLVDPFCGSGTILIEAYHNYNGIP 204
Query: 338 FVCGDIN-EKLVLKTQANVLHNSGNLNRELK---------------VSPLVCNVRQLCFK 381
D + +KL + + +++RE+K V + N+ K
Sbjct: 205 NKWRDFSFKKLPIYDEERWKEIKHSVDREMKNKKLNLIGVERFEKHVRGCIKNLEHSAVK 264
Query: 382 PACVDG--------------IVTDLPFGKRVGSKSNNFLLYRLFLIEI 415
C+ G I+T+ PFG R+GSK F LY F E+
Sbjct: 265 ANCILGDAEKLHEYVRGTEHIITNPPFGLRIGSKKKIFRLYENFAREL 312
>gi|95768409|gb|ABF57353.1| THUMP domain containing 3 [Bos taurus]
Length = 214
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 17/121 (14%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE +E +EK G + K G+++F+I + + +V LR
Sbjct: 32 SESEHLQVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDISVDSLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ LKD + K + W ++IW
Sbjct: 92 VDNLFVVVQEFKDYQF--KETKEEV------------LKDFEELAGK---LPWSDPLKIW 134
Query: 130 K 130
K
Sbjct: 135 K 135
>gi|322368142|ref|ZP_08042711.1| putative RNA methylase [Haladaptatus paucihalophilus DX253]
gi|320552158|gb|EFW93803.1| putative RNA methylase [Haladaptatus paucihalophilus DX253]
Length = 322
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 108/245 (44%), Gaps = 22/245 (8%)
Query: 232 VTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQT--SLHRRNIVE 289
V++ ++ER G L D F VDLDD D ++ + +G T++ R +
Sbjct: 93 VSTQQAERELGQVLVDRGF-AVDLDDPDHELRATFSGDLCALGWLETESVRDYGTRKPTD 151
Query: 290 ---FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEK 346
F ++ P +A +V +A G LDPMCG G + +E +L D EK
Sbjct: 152 RPFFQPGSMDPLLARALVNIAGARAGTTLLDPMCGTGGVLIEAALVGARPL--GADAQEK 209
Query: 347 LVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFL 406
+V N+ H + + + + + L F +DG+V D P+G++ SK N
Sbjct: 210 MVRGAAENLDHYAPD----AAAATVRGDATHLPFPDDAIDGVVFDAPYGRQ--SKIANLD 263
Query: 407 LYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQI--KINMSGMKSFV 464
L L + + R RA+++ DR +A T A W Q +++ S + +V
Sbjct: 264 LDDLVAGALAE-ARRVASRAVVV-GDRSWANEA---TDAGWNVENQFERRVHRS-LTRYV 317
Query: 465 FILNR 469
+L+R
Sbjct: 318 VVLSR 322
>gi|444722829|gb|ELW63504.1| SET domain-containing protein 5 [Tupaia chinensis]
Length = 1458
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 240 AFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTI 299
F + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+
Sbjct: 8 GFDFTVQDHFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNITHFGPTTLRSTL 67
Query: 300 AYNMVRLAS 308
AY M+ S
Sbjct: 68 AYGMLSKPS 76
>gi|90080331|dbj|BAE89647.1| unnamed protein product [Macaca fascicularis]
Length = 307
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 89/220 (40%), Gaps = 37/220 (16%)
Query: 122 WKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKE------------S 169
W + IWK + + E+ ++ +D +K NEI I K+
Sbjct: 104 WLNAISIWKNLLELDA----KKEKLSQRDDNQLKRKVGENEIIIAKKLKIEQMQKIEENR 159
Query: 170 SCETEPQVNNVQIEKGDL-------QNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRV 222
C+ E Q+ +E+ D Q +E + DI + NQK L FRV
Sbjct: 160 DCQLEKQIEEETLEQRDFTTKSENFQEEEFRN-DIEKAIDTHNQKD---------LTFRV 209
Query: 223 TCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQT 280
+C G T+ E R G + + W DL + ++I + + + VG+PV +
Sbjct: 210 SCRCSGTIGKAFTAQEVGRVIGIAIIKHFGWKADLRNPKLEIFIHLNDVYSVVGIPVFRV 269
Query: 281 SLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
L R ++ L+ TIA+ M LA G LDPMC
Sbjct: 270 PLASRAYIK--TAGLRSTIAWAMASLADIKAGAFVLDPMC 307
>gi|428319728|ref|YP_007117610.1| rRNA (guanine-N(2)-)-methyltransferase [Oscillatoria nigro-viridis
PCC 7112]
gi|428243408|gb|AFZ09194.1| rRNA (guanine-N(2)-)-methyltransferase [Oscillatoria nigro-viridis
PCC 7112]
Length = 374
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD+D D+ IN+ I + A + L + SLHRR + LK T+A ++ +A P
Sbjct: 130 VDVDHPDLLINIHIHQDRAILSLDSSGGSLHRRGYRPAMGLAPLKETLAAALLEMAEWTP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GT+P+E +L
Sbjct: 190 DLPFLDPMCGSGTLPLEATL 209
>gi|11499760|ref|NP_071003.1| hypothetical protein AF2178 [Archaeoglobus fulgidus DSM 4304]
gi|6137242|sp|O28105.1|TRM14_ARCFU RecName: Full=tRNA (guanine(6)-N2)-methyltransferase; AltName:
Full=tRNA m2G6-methyltransferase
gi|2648346|gb|AAB89073.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 392
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYF------WLVDLDDYDIDINLQIRYNEAYV 273
F + RVG+H TSM+ R G + D++ V+L+ D+ I +++ +E +V
Sbjct: 120 FAIRSLRVGEHDFTSMDIARVAGQAVIDSFMESYGERLKVNLNQPDVIIRVELVDSELFV 179
Query: 274 GLPVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
G+ T ++H+R +N L IA M+R+A + +DPMCG GTIP+E +L
Sbjct: 180 GVDTTGDDAMHKRWWRVYNHPAHLNAAIACGMLRIADWKVDESLIDPMCGSGTIPIEAAL 239
>gi|170290281|ref|YP_001737097.1| putative RNA methylase [Candidatus Korarchaeum cryptofilum OPF8]
gi|170174361|gb|ACB07414.1| putative RNA methylase [Candidatus Korarchaeum cryptofilum OPF8]
Length = 364
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 124/293 (42%), Gaps = 45/293 (15%)
Query: 209 NFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWL------VDLDDYDIDI 262
+F PE F V NR+G+H TS++ R G + D+Y V+LD D+ +
Sbjct: 84 SFMRPE---WSFAVRSNRLGEHDFTSVDIGRVAGQAVIDSYMEARGVRLKVNLDSPDVIV 140
Query: 263 NLQIRYNEAYVGLPVT-QTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
+ +E VG+ +T LH+RN V + L PT+A +++ L+ LDP C
Sbjct: 141 RCDLIKDELLVGIDMTGDEGLHKRNYRVYQHPAPLNPTLASSLIYLSEWSHEHSLLDPFC 200
Query: 321 GGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANV-----------LHNSGNLNRELKVS 369
G GTI E + T VC + LK + L+ + ++ +
Sbjct: 201 GSGTILFEAGMIARGT-PVCKFRRDFAFLKFFGELPSFEERDVELKLYGVEKFRKHIEGA 259
Query: 370 PLVCNVRQLCFKPACVDG--------------IVTDLPFGKRVGSKSNNFLLYRLFLIEI 415
L+ R + P + G IVT+ P+G R+G K +Y FL
Sbjct: 260 ELIA--RYVGIYPEFIQGHAERIGEYFDSVDFIVTNPPYGLRIGKKGIIEKIYAGFLRAA 317
Query: 416 GKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILN 468
I++ R +++TS+ I H K K +++ G+++ V+I+
Sbjct: 318 SSILKR---RMVVITSETS--IFEKHARDNFEKIEK-LEVMYGGLRTGVYIVR 364
>gi|448616734|ref|ZP_21665444.1| RNA methylase [Haloferax mediterranei ATCC 33500]
gi|445751389|gb|EMA02826.1| RNA methylase [Haloferax mediterranei ATCC 33500]
Length = 318
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 109/250 (43%), Gaps = 34/250 (13%)
Query: 232 VTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-- 289
V++ ++ER G L D F VDLDD D ++ + + VG + R+ +
Sbjct: 91 VSTTDAERRIGSALVDRGFG-VDLDDPDHELRVYFSEDACLVGWTTVEGV---RDFADRK 146
Query: 290 ------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDI 343
F ++ P A V +A PG LDPMCG G + +E L V D
Sbjct: 147 PTDRPFFQPGSMAPVDARAFVNMAGAEPGARILDPMCGTGGVLLEAGLVGADVVGV--DA 204
Query: 344 NEKLVLKTQANVLH--NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSK 401
EK+ Q N+ H SG + R S +C+ +DG+V D P+G++ SK
Sbjct: 205 QEKMASGAQVNLDHYVGSGEVLRGDATSLPLCD--------DSMDGVVFDAPYGRQ--SK 254
Query: 402 SNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRK--QIKINMSG 459
L L + ++ R + ++ +DR + +A A W+ + + +++ S
Sbjct: 255 IAQHSLADLVGGALAEVRR--VAPRCVMVADRSWVDEA---EDAGWEVEQVFERRVHRS- 308
Query: 460 MKSFVFILNR 469
+ +V +L+R
Sbjct: 309 LVRYVHLLHR 318
>gi|325968414|ref|YP_004244606.1| RNA methylase [Vulcanisaeta moutnovskia 768-28]
gi|323707617|gb|ADY01104.1| putative RNA methylase [Vulcanisaeta moutnovskia 768-28]
Length = 350
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 103/238 (43%), Gaps = 15/238 (6%)
Query: 209 NFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLND----TYFW-LVDLDDYDIDIN 263
N+ P + + +R G H S ++ G ++++ Y +LD+ D+ +
Sbjct: 93 NYLTPNTTI---SILADRSGDHNFKSPDAAALLGERISEFLASRYLRPFFNLDNADLVLR 149
Query: 264 LQIRYNEAYVGLPVTQTSLHRRNIVEFN-ITTLKPTIAYNMVRLASPIPGDVFLDPMCGG 322
L I ++ +GL +T+ L R+ FN ++ P +A M+R+ +P P D CG
Sbjct: 150 LIIDQDKCVLGLSITREPLKSRSYRRFNHPASINPILANAMLRILAPEPSSRVCDITCGS 209
Query: 323 GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP 382
GTI +E +L F+C DI+ V + N+ + V +V + + +
Sbjct: 210 GTIVIEGALMRRDVSFLCVDIDYGYV----NGAVMNAREAGVDSSVDFVVMDSTRPAIRS 265
Query: 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQAL 440
D V + PFG RV Y + ++++ G +L + RK L++ L
Sbjct: 266 YVCDHAVFNPPFGIRVEPLEGITNFYNSLFKSLSELLKA--GSGFVLITVRKSLVRRL 321
>gi|83409928|emb|CAI64349.1| putative RNA methylase [uncultured archaeon]
Length = 359
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 109/257 (42%), Gaps = 50/257 (19%)
Query: 198 NSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFGGKLNDTYFWLVDLD 256
+S+ N N E L ++V ++ K ++S + ER GG L + + DL
Sbjct: 91 SSIPGIMNMVENVDFDEPAFLTYKVRAKKIKRKSPISSEDIERKIGGVLYNKGYR-ADL- 148
Query: 257 DYDIDINLQIRYNEAY---------VGLPVTQTSLHRR---NIVEFNITTLKPTIAYNMV 304
IN +RY V V + S R N F L P +A ++V
Sbjct: 149 -----INPDVRYRAVLTDGKCIFGRVLASVDRGSFEDRKPQNKPFFYPGVLMPRLARSLV 203
Query: 305 RLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANV--------- 355
+A PG + LDP CG G I VE L T D+ K++L + N+
Sbjct: 204 NIARSGPGSMILDPYCGTGGILVEAGLMGAVTLGC--DVQRKILLGARMNLDFYVPDHSL 261
Query: 356 -LHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNF-LLYRLFLI 413
++GN + K +C+D +VTD P+G+ ++ + +L + L
Sbjct: 262 MFQDAGN----------------MALKDSCIDCVVTDPPYGRSALIQARSLDILMKHSLK 305
Query: 414 EIGKIVRPQIGRAILLT 430
EI +++RP GRA++++
Sbjct: 306 EIFRVLRPG-GRAVVVS 321
>gi|284928953|ref|YP_003421475.1| putative N6-adenine-specific DNA methylase [cyanobacterium UCYN-A]
gi|284809412|gb|ADB95117.1| predicted N6-adenine-specific DNA methylase [cyanobacterium UCYN-A]
Length = 375
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 44/232 (18%)
Query: 252 LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPI 310
++D + +I IN I N + L + SLHRR +K ++A ++ +A
Sbjct: 130 IIDTKNPNILINAHIDKNSCILSLDSSGNSLHRRGYRTAMGFAPIKESLASALLDIAEWT 189
Query: 311 PGDVFLDPMCGGGTIPVECSL------------SYPHTFFVCGDINEKLV---------- 348
P LDPMCG GTIP+E +L S+ F+ D +EKL
Sbjct: 190 PDICLLDPMCGSGTIPIEATLKSLNIAVGLNRKSFGFQFW--QDFDEKLYKTIINEAVEK 247
Query: 349 --LKTQANVLHNSGNLN--RELKVSPLVCNVRQLCF----------KPACVDGIVTDLPF 394
K +A + +L+ + K++ CN+ + + PA I+ + P+
Sbjct: 248 QRKKLKAPIFGYDCDLSVIEQAKINAKQCNIEKHIYFIQTVLKDIEAPADRGMIICNPPY 307
Query: 395 GKRVGSKSNNFLLYRLFLIEIGKIVRPQI-GRAILLTSDRKHLIQALHITSA 445
GKR+G LY+L +G I++ + G + S K LI+ + + ++
Sbjct: 308 GKRIGDTKELGKLYKL----LGDILKQRFKGWVAYILSGDKELIKQIGLRAS 355
>gi|448589305|ref|ZP_21649464.1| RNA methylase [Haloferax elongans ATCC BAA-1513]
gi|445735733|gb|ELZ87281.1| RNA methylase [Haloferax elongans ATCC BAA-1513]
Length = 323
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 32/250 (12%)
Query: 232 VTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQT--SLHRRNIVE 289
+++ ++ER G L D F VDLDD D ++ + + VG V + R +
Sbjct: 94 ISTTDAERRLGSALVDRGFG-VDLDDPDHELRVYFSEDACLVGWTVVEGVRGFGDRKPTD 152
Query: 290 ---FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEK 346
F ++ P A V +A PG LDPMCG G + +E L V D K
Sbjct: 153 RPFFQPGSMAPMDARAFVNMAGAEPGARILDPMCGTGGVLLEAGLVGADVVGV--DAQAK 210
Query: 347 LVLKTQANVLH--NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNN 404
+ Q NV H SG + R + +C+ +DG+V D P+G++ SK
Sbjct: 211 MARGAQVNVDHYVGSGAVIRGDATALPLCD--------DSMDGVVFDAPYGRQ--SKIAQ 260
Query: 405 FLLYRLFLIEIGKI--VRPQIGRAILLTSDRKHLIQALHITSALWKCRK--QIKINMSGM 460
L L + ++ V PQ ++ +DR + +A A W+ + + +++ S +
Sbjct: 261 HSLADLVGGALAEVHRVAPQ----CVMVADRSWVDEA---EDAGWEVEQVFERRVHRS-L 312
Query: 461 KSFVFILNRT 470
+V +L+R
Sbjct: 313 VRYVHLLHRA 322
>gi|389845647|ref|YP_006347886.1| RNA methylase [Haloferax mediterranei ATCC 33500]
gi|388242953|gb|AFK17899.1| putative RNA methylase [Haloferax mediterranei ATCC 33500]
Length = 340
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 109/250 (43%), Gaps = 34/250 (13%)
Query: 232 VTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-- 289
V++ ++ER G L D F VDLDD D ++ + + VG + R+ +
Sbjct: 113 VSTTDAERRIGSALVDRGFG-VDLDDPDHELRVYFSEDACLVGWTTVEGV---RDFADRK 168
Query: 290 ------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDI 343
F ++ P A V +A PG LDPMCG G + +E L V D
Sbjct: 169 PTDRPFFQPGSMAPVDARAFVNMAGAEPGARILDPMCGTGGVLLEAGLVGADVVGV--DA 226
Query: 344 NEKLVLKTQANVLH--NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSK 401
EK+ Q N+ H SG + R S +C+ +DG+V D P+G++ SK
Sbjct: 227 QEKMASGAQVNLDHYVGSGEVLRGDATSLPLCD--------DSMDGVVFDAPYGRQ--SK 276
Query: 402 SNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRK--QIKINMSG 459
L L + ++ R + ++ +DR + +A A W+ + + +++ S
Sbjct: 277 IAQHSLADLVGGALAEVRR--VAPRCVMVADRSWVDEA---EDAGWEVEQVFERRVHRS- 330
Query: 460 MKSFVFILNR 469
+ +V +L+R
Sbjct: 331 LVRYVHLLHR 340
>gi|49904229|gb|AAH76941.1| THUMPD3 protein, partial [Xenopus (Silurana) tropicalis]
Length = 140
Score = 60.5 bits (145), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 17/123 (13%)
Query: 8 STAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKEL 67
+ A ++ +TI ATV TGFE E +EK G + K G+++F+I + +V L
Sbjct: 25 ADANLEDAHVTIGATVPTGFEFTAAAEVEEKLGCPCKISKDRGKIYFDIKKDRLAQVHRL 84
Query: 68 RGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYME 127
R +DN+ I+ F +F F K T+ED+ LKD+ + K + W+ +
Sbjct: 85 RSVDNLFVIVKEFSDFPF--KETKEDA------------LKDLGDLAEK---LPWESALS 127
Query: 128 IWK 130
W+
Sbjct: 128 AWE 130
>gi|156742939|ref|YP_001433068.1| RNA methylase [Roseiflexus castenholzii DSM 13941]
gi|156234267|gb|ABU59050.1| putative RNA methylase [Roseiflexus castenholzii DSM 13941]
Length = 350
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 5/177 (2%)
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353
L T+A M+RL P D L+ CG GT+ +E P + D++ + + Q
Sbjct: 174 ALNATLASVMMRLTQPSEVDRVLNLACGSGTLLIERLFLAPAQLAIGCDLDREALRCAQR 233
Query: 354 NVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLI 413
N+ + + +++ + L + +D I DLPFG+ +GS +N LY +
Sbjct: 234 NL--EAAGFTQAVRLEQW--DATLLPLETESIDMICADLPFGQLIGSHRDNEALYPRLIT 289
Query: 414 EIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRT 470
E ++ R LLT + + + + + LW +++ GM V++ RT
Sbjct: 290 EAARVA-ASGARMCLLTHEVRLIERVFERYAGLWTLTHVVRVRTGGMTPRVYLALRT 345
>gi|334119841|ref|ZP_08493925.1| rRNA (guanine-N(2)-)-methyltransferase [Microcoleus vaginatus
FGP-2]
gi|333457482|gb|EGK86105.1| rRNA (guanine-N(2)-)-methyltransferase [Microcoleus vaginatus
FGP-2]
Length = 374
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD++ D+ IN+ I + A + L + SLHRR + LK T+A ++ +A P
Sbjct: 130 VDVEHPDLLINIHIHQDRAILSLDSSGGSLHRRGYRPAMGLAPLKETLAAALLEMAEWTP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GT+P+E +L
Sbjct: 190 DLPFLDPMCGSGTLPLEATL 209
>gi|448578917|ref|ZP_21644276.1| RNA methylase [Haloferax larsenii JCM 13917]
gi|445724845|gb|ELZ76472.1| RNA methylase [Haloferax larsenii JCM 13917]
Length = 321
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 26/217 (11%)
Query: 232 VTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQT--SLHRRNIVE 289
+++ ++ER G L + F VDLDD D ++ + + VG V + R +
Sbjct: 94 ISTTDAERRLGSALVERGF-DVDLDDPDHELRVYFSEDACLVGWTVVEGVRGFGDRKPTD 152
Query: 290 ---FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEK 346
F ++ P A V +A PG LDPMCG G + +E L V D EK
Sbjct: 153 RPFFQPGSMAPMDARAFVNMAGAEPGARILDPMCGTGGVLLEAGLVGADVVGV--DAQEK 210
Query: 347 LVLKTQANVLH--NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNN 404
+ Q NV H SG + R + +C+ +DG+V D P+G++ SK
Sbjct: 211 MARGAQVNVDHYVGSGEVVRGDATALPLCD--------DSMDGVVFDAPYGRQ--SKIAQ 260
Query: 405 FLLYRLFLIEIGKI--VRPQIGRAILLTSDRKHLIQA 439
L L + ++ V PQ ++ +DR + +A
Sbjct: 261 HSLADLVGGALAEVHRVAPQ----CVMVADRSWVDEA 293
>gi|448606632|ref|ZP_21659058.1| RNA methylase [Haloferax sulfurifontis ATCC BAA-897]
gi|445738840|gb|ELZ90352.1| RNA methylase [Haloferax sulfurifontis ATCC BAA-897]
Length = 321
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 76/179 (42%), Gaps = 24/179 (13%)
Query: 228 GKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
G +++ ++ER G L D F VDLDD D ++ + + VG + R+
Sbjct: 90 GLTDISTTDAERELGSALVDRGFG-VDLDDPDHELRVYFSEDACLVGWTAVEAV---RDF 145
Query: 288 VE--------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFV 339
+ F ++ P A V +A PG LDPMCG G + +E L V
Sbjct: 146 ADRKPTDRPFFQPGSMAPVDARAFVNMAGAEPGARILDPMCGTGGVLLEAGLVGADVVGV 205
Query: 340 CGDINEKLVLKTQANVLH--NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK 396
D K+V + N+ H SG++ R + L F+ +DG V D P+G+
Sbjct: 206 --DAQAKMVGGARENLRHYVGSGDVVR--------GDATALPFRDDSMDGAVFDAPYGR 254
>gi|434388748|ref|YP_007099359.1| putative N6-adenine-specific DNA methylase [Chamaesiphon minutus
PCC 6605]
gi|428019738|gb|AFY95832.1| putative N6-adenine-specific DNA methylase [Chamaesiphon minutus
PCC 6605]
Length = 374
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 229 KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI- 287
K +T ++E+ FG + N VD+ D +I IN+ I + V L + +SLHRR
Sbjct: 113 KRAITKQQTEK-FGARSN------VDIADPNIRINVHIEKDTCTVNLDSSGSSLHRRGYR 165
Query: 288 VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
LK ++A +++++ P F+DP+CG GT+P+E ++
Sbjct: 166 SAVGDAPLKESLAAALMKMSGWTPDLAFVDPLCGSGTLPLEAAM 209
>gi|448611224|ref|ZP_21661858.1| RNA methylase [Haloferax mucosum ATCC BAA-1512]
gi|445743656|gb|ELZ95137.1| RNA methylase [Haloferax mucosum ATCC BAA-1512]
Length = 320
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 29/200 (14%)
Query: 232 VTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-- 289
V++ ++ER G L F VDLDD D ++ + + VG V + R+ +
Sbjct: 91 VSTTDAERRIGSALVAREF-DVDLDDPDHELRVYFSEDACLVGWTVVEGV---RDFADRK 146
Query: 290 ------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDI 343
F ++ P A V +A PG LDPMCG G + +E L V D
Sbjct: 147 PTDRPFFQPGSMAPVDARAFVNMAGAKPGARILDPMCGTGGVLLEAGLVGADVVGV--DA 204
Query: 344 NEKLVLKTQANVLH--NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSK 401
K+ + NV H G++ R + +C+ +DG+V D P+G++ SK
Sbjct: 205 QSKMAAGARVNVAHYVGDGHVVRGDATALPLCD--------DSIDGVVFDAPYGRQ--SK 254
Query: 402 SNNFLLYRLF---LIEIGKI 418
L L L E+G++
Sbjct: 255 IARHSLAELVGGALAEVGRV 274
>gi|428214378|ref|YP_007087522.1| putative N6-adenine-specific DNA methylase [Oscillatoria acuminata
PCC 6304]
gi|428002759|gb|AFY83602.1| putative N6-adenine-specific DNA methylase [Oscillatoria acuminata
PCC 6304]
Length = 375
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD D D+ +NL I + A + L + SLHRR LK T+A ++ LA P
Sbjct: 131 VDPKDPDLLLNLHIHGDRAILSLDSSGNSLHRRGYRPAMGTAPLKETLAAAILELAEYSP 190
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDP+CG GT+P+E L
Sbjct: 191 EQTFLDPLCGSGTLPLEAGL 210
>gi|297622636|ref|YP_003704070.1| putative RNA methylase [Truepera radiovictrix DSM 17093]
gi|297163816|gb|ADI13527.1| putative RNA methylase [Truepera radiovictrix DSM 17093]
Length = 335
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 9/163 (5%)
Query: 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN 358
+A M+ LA D L+ MCG GT+ +E +L+ P + D + + T+ N
Sbjct: 168 VAAAMLALAEVRASDRLLNAMCGSGTLAIEQALTLPPARLLACDTSAAALACTRDNA--R 225
Query: 359 SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKI 418
+ + EL L + L A V +V D P+G VG+ N LY FL+E ++
Sbjct: 226 AAGVTLEL----LQADATALPLPDASVSVVVADPPWGDAVGTHGRNRALYPAFLLEAARV 281
Query: 419 VRPQIGRAILLTSDRKHL--IQALHITSALWKCRKQIKINMSG 459
P GR ++LT + + + A A W + +++ G
Sbjct: 282 TAPG-GRLVILTHELRLFDEVLAQPAVRARWDSVRSVQVFHGG 323
>gi|119486627|ref|ZP_01620677.1| hypothetical protein L8106_12790 [Lyngbya sp. PCC 8106]
gi|119456244|gb|EAW37376.1| hypothetical protein L8106_12790 [Lyngbya sp. PCC 8106]
Length = 374
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+D +D D+ INL I + + L + SLHRR LK T+A ++ +A P
Sbjct: 130 IDTEDPDVIINLHIDQDRGILSLDSSGQSLHRRGYRPAVGKAPLKETLAAALLEMAGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GT+P+E +L
Sbjct: 190 NMPFLDPMCGSGTLPLEAAL 209
>gi|444724882|gb|ELW65469.1| Nardilysin [Tupaia chinensis]
Length = 600
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 16 QITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILF 75
Q T+ ATV TGFE +E +EK G + K +G+++F++ +K + +V LR +DN+
Sbjct: 38 QDTVRATVPTGFEQTAADEVREKLGSSCKISKDLGKIYFDVSVKSLAQVHCLRSVDNLFV 97
Query: 76 IIATFENFGFSNKGTEEDSGQKDESDL 102
++ F+++ F K T+E+ KD DL
Sbjct: 98 VVQEFKDYQF--KKTKEEV-LKDFEDL 121
>gi|76801084|ref|YP_326092.1| hypothetical protein NP0864A [Natronomonas pharaonis DSM 2160]
gi|76556949|emb|CAI48523.1| tRNA (guanine(6)-N(2))-dimethyltransferase [Natronomonas pharaonis
DSM 2160]
Length = 360
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWL------VDLDDYDIDINLQIRYNEAY- 272
F V R G H TSM+ G + D Y VDLDD + + + Y+E +
Sbjct: 90 FGVVGTRHGTHEFTSMDVADRVGQAVIDAYREATGTRLPVDLDDPTVRLEAYL-YDERFT 148
Query: 273 VGLPVTQTSLHRR--NIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECS 330
+ + +T SLHRR + E + L+ T+AY ++RLA D +DPM G TIP+E +
Sbjct: 149 LAVDLTGESLHRRPYRVCEHD-APLRGTLAYQLLRLADYSADDRLVDPMAGSATIPIEAA 207
Query: 331 L 331
L
Sbjct: 208 L 208
>gi|427416523|ref|ZP_18906706.1| putative N6-adenine-specific DNA methylase [Leptolyngbya sp. PCC
7375]
gi|425759236|gb|EKV00089.1| putative N6-adenine-specific DNA methylase [Leptolyngbya sp. PCC
7375]
Length = 379
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 4/126 (3%)
Query: 210 FTNPEENL-LKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDY--DIDINLQI 266
+ +P++ L +K +R+ T+++ + A + D Y D+D ++ IN+ I
Sbjct: 85 YLSPDQTLAVKATGKNDRLNHSHFTALQVKNAIVDQQQDRYGERSDVDTEIPNVQINVHI 144
Query: 267 RYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTI 325
N+A V L + +SLHRR LK ++A +V+L FLDPMCG GT+
Sbjct: 145 NDNKATVSLDSSGSSLHRRGYRPAMGTAPLKESLAAALVQLTEWSGHGAFLDPMCGSGTL 204
Query: 326 PVECSL 331
P+E +L
Sbjct: 205 PIEATL 210
>gi|169236810|ref|YP_001690010.1| hypothetical protein OE4144R [Halobacterium salinarum R1]
gi|167727876|emb|CAP14664.1| tRNA (guanine(10),N(2))-dimethyltransferase [Halobacterium
salinarum R1]
Length = 322
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 99/241 (41%), Gaps = 28/241 (11%)
Query: 229 KHT--VTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQT--SLHR 284
+HT V + +ER G L D F VDLD D ++ ++ ++G V +
Sbjct: 90 RHTTGVDTQRAERDLGAVLVDAGF-DVDLDAPDHELRALFTADDCFLGWHVADSVRDYGT 148
Query: 285 RNIVE---FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCG 341
R + F ++ P +A LA PGD LDPMCG G + +E L H
Sbjct: 149 RKPTDRPFFQPGSMDPLLARAACNLARVTPGDRVLDPMCGTGGVLIEAGLLGAHPIGT-- 206
Query: 342 DINEKLVLKTQANVLH--NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVG 399
D K+ + N+ H + R + L +D V D P+G++
Sbjct: 207 DAQAKMAAGARRNLTHYVDDATTGR--------ADATALPLPSDSIDAAVLDAPYGRQ-- 256
Query: 400 SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWK--CRKQIKINM 457
SK L L + ++ R GR +L+ +DR +A T+A W R Q +++
Sbjct: 257 SKIATHDLADLVGGALDELARVTAGRCVLV-ADRDWRAEA---TAAGWTVDARFQRRVHR 312
Query: 458 S 458
S
Sbjct: 313 S 313
>gi|307152645|ref|YP_003888029.1| rRNA (guanine-N(2)-)-methyltransferase [Cyanothece sp. PCC 7822]
gi|306982873|gb|ADN14754.1| rRNA (guanine-N(2)-)-methyltransferase [Cyanothece sp. PCC 7822]
Length = 375
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 18/151 (11%)
Query: 182 IEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAF 241
++K D +N E + C+ NQ N ++ T ++ K+ + + E+ F
Sbjct: 77 VKKIDWENYLQPEQTLAIHCTGSNQHLNHSH---------FTALQI-KNAIIDQQREK-F 125
Query: 242 GGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIA 300
G + + VD+ D+ IN I N + L + SLHRR + LK T+A
Sbjct: 126 GKRSS------VDVQQPDLLINAHIYQNNCILSLDSSGESLHRRGYRAAMGLAPLKETLA 179
Query: 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
M+ LA P DP+CG GT+P+E +L
Sbjct: 180 AAMLELAQWTPQLALFDPLCGSGTLPLEAAL 210
>gi|323339831|ref|ZP_08080100.1| site-specific DNA-methyltransferase [Lactobacillus ruminis ATCC
25644]
gi|417974098|ref|ZP_12614922.1| hypothetical protein ANHS_1609 [Lactobacillus ruminis ATCC 25644]
gi|323092704|gb|EFZ35307.1| site-specific DNA-methyltransferase [Lactobacillus ruminis ATCC
25644]
gi|346329553|gb|EGX97848.1| hypothetical protein ANHS_1609 [Lactobacillus ruminis ATCC 25644]
Length = 378
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 45/245 (18%)
Query: 230 HTVTSMES--ERAFGGKLNDTYFWLVDLDDYDI--DINLQIRYNEAYVGLPVTQTSLHRR 285
H V S++S ++A K+ YF L + I I + + L T +SL +R
Sbjct: 104 HNVPSVQSIVKKAIVDKMCTVYFRRTQLPETGALYPIECAINKDNVMLTLDTTGSSLFKR 163
Query: 286 NI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTF------- 337
E LK +A +V ++ P F+DP+CG GTIP+E +L H
Sbjct: 164 GYRTEKGGAPLKENMAAALVLISHWYPEQTFVDPVCGSGTIPIEAAL-IGHNIAPGLNRQ 222
Query: 338 FVCG--DINEKLVLKTQANVLHNSGNLNRELKVSPL---------------------VCN 374
F CG ++ E V + + +++REL + N
Sbjct: 223 FACGKWELAETGVEEKIREEARSKADMSRELDIWGYDIDGRMVEIARRNSAAAGVRSSIN 282
Query: 375 VRQLCFKPACVDG----IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRP-QIGRAILL 429
++Q+ K D IV + P+G+R+ S+ LYR ++G+I RP + +L
Sbjct: 283 LKQMALKDFKTDKEYGVIVANPPYGERLSSRDEVHKLYR----QMGEIYRPLETWGKYIL 338
Query: 430 TSDRK 434
TSD K
Sbjct: 339 TSDLK 343
>gi|219121199|ref|XP_002185828.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582677|gb|ACI65298.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 407
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 64/139 (46%), Gaps = 23/139 (16%)
Query: 226 RVGKHTV-TSMESERAF--GGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGL------- 275
R G TV T + +R F K T W+VDL++YDI+I L +R N +GL
Sbjct: 208 REGAGTVSTELPPQRHFVIPDKFGKT--WIVDLENYDIEIVLLLRSNRVAIGLATRPYQY 265
Query: 276 -----------PVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGT 324
P + + V + L+P+ A ++ A PGDV LDP G GT
Sbjct: 266 LGAKSFDKGALPPDVSRPYLSGQVLSKVLRLRPSTAQILLHQAKLQPGDVVLDPCVGIGT 325
Query: 325 IPVECSLSYPHTFFVCGDI 343
IP+E +L + V GD+
Sbjct: 326 IPLEATLQGIPVYAVGGDL 344
>gi|443312346|ref|ZP_21041964.1| putative N6-adenine-specific DNA methylase [Synechocystis sp. PCC
7509]
gi|442777584|gb|ELR87859.1| putative N6-adenine-specific DNA methylase [Synechocystis sp. PCC
7509]
Length = 374
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 209 NFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRY 268
N T + L T +V K V + + FG + N V+ D D+ IN+ I
Sbjct: 94 NATGKSDRLNHTHFTALQVKKAIVEQQQEQ--FGDRSN------VETQDPDLRINVHIDR 145
Query: 269 NEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPV 327
+ V L + SLHRR LK ++A +++L+S P +F DP+CG GT+P+
Sbjct: 146 DVCTVSLDSSGNSLHRRGYRPVMGAAPLKESLAAALIQLSSWQPEQMFYDPLCGSGTLPL 205
Query: 328 ECSL 331
E SL
Sbjct: 206 EASL 209
>gi|443316301|ref|ZP_21045751.1| putative N6-adenine-specific DNA methylase [Leptolyngbya sp. PCC
6406]
gi|442784106|gb|ELR93996.1| putative N6-adenine-specific DNA methylase [Leptolyngbya sp. PCC
6406]
Length = 381
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 40/229 (17%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
V+LD+ D+ +NL + + A + L + +SLHRR + LK ++A ++RL P
Sbjct: 137 VELDNPDVRVNLHLHQDHATLSLDSSGSSLHRRGYRPAVGLAPLKESLAAALIRLTGWTP 196
Query: 312 GDVFLDPMCGGGTIPVECSL----SYPH------TFFVCGDINEKLV--LKTQANVLHNS 359
F DP+CG GT+P+E SL P F D + L L+ +A + +
Sbjct: 197 EQAFFDPLCGSGTLPLEASLMALNRAPGLHRDRMGFETWPDFDPALWQRLRQEAEAMQLT 256
Query: 360 ------GNLNR------ELKVSPLVCNVR-QLCFK---------PACVDGIVTDLPFGKR 397
G +R + + + L V Q+ F+ PA ++ + P+G+R
Sbjct: 257 TLATPIGGCDRDRDIIIQARSNALRSGVADQVQFQQQDLSQVEAPAATGILMCNPPYGER 316
Query: 398 VGSKSNNFLLYRLFLIEIGKIVRPQI-GRAILLTSDRKHLIQALHITSA 445
+G S+ Y L +G +++ + G + S K L QA+ + S+
Sbjct: 317 LGKGSDLAAFYAL----LGDVLKQRFKGWTAFVLSGNKQLAQAIGLKSS 361
>gi|452208521|ref|YP_007488643.1| tRNA (guanine(6)-N(2))-dimethyltransferase [Natronomonas
moolapensis 8.8.11]
gi|452084621|emb|CCQ37968.1| tRNA (guanine(6)-N(2))-dimethyltransferase [Natronomonas
moolapensis 8.8.11]
Length = 383
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 9/121 (7%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYF------WLVDLDDYDIDINLQIRYNEAYV 273
F V R G H TS++ G + D Y VDLDD + + + + +
Sbjct: 90 FGVVGTRHGDHEFTSVDVAERVGQAVIDAYRDAAGTRLPVDLDDPTVKLEAYLYDDRFTL 149
Query: 274 GLPVTQTSLHRR--NIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
+ +T SLH+R I E + ++ T+AY M+R+A P D +DPM G TIP E +L
Sbjct: 150 AVDLTGESLHKRPYRICEHD-APVRGTLAYAMLRIAGWTPTDRLVDPMAGSATIPTEAAL 208
Query: 332 S 332
+
Sbjct: 209 A 209
>gi|347525384|ref|YP_004832132.1| nucleic acid methyltransferase [Lactobacillus ruminis ATCC 27782]
gi|345284343|gb|AEN78196.1| Putative nucleic acid methyltransferase [Lactobacillus ruminis ATCC
27782]
Length = 378
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 103/245 (42%), Gaps = 45/245 (18%)
Query: 230 HTVTSMES--ERAFGGKLNDTYFWLVDLDDYDI--DINLQIRYNEAYVGLPVTQTSLHRR 285
H V S++S ++A K+ YF L + I I + + L T +SL +R
Sbjct: 104 HNVPSVQSIVKKAIVDKMCTVYFRRTQLPETGALYPIECAINKDNVMLTLDTTGSSLFKR 163
Query: 286 NI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTF------- 337
E LK +A +V ++ P F+DP+CG GTIP+E +L H
Sbjct: 164 GYRTEKGGAPLKENMAAALVLISHWYPEHTFVDPVCGSGTIPIEAAL-IGHNIAPGLNRQ 222
Query: 338 FVCG--DINEKLVLKTQANVLHNSGNLNRELKVSPL---------------------VCN 374
F CG ++ E + + + +++REL + N
Sbjct: 223 FACGKWELAETGIEEKIREEARSRADMSRELDIWGYDIDGRMVEIARRNSAAAGVRSSIN 282
Query: 375 VRQLCFKPACVDG----IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRP-QIGRAILL 429
++Q+ K D IV + P+G+R+ S+ LYR ++G+I RP + +L
Sbjct: 283 LKQMALKDFKTDKEYGVIVANPPYGERLSSRDEVHKLYR----QMGEIYRPLETWGKYIL 338
Query: 430 TSDRK 434
TSD K
Sbjct: 339 TSDLK 343
>gi|254423412|ref|ZP_05037130.1| Putative RNA methylase family UPF0020 [Synechococcus sp. PCC 7335]
gi|196190901|gb|EDX85865.1| Putative RNA methylase family UPF0020 [Synechococcus sp. PCC 7335]
Length = 374
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 254 DLDDY--DIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPI 310
D+D Y D+ IN+ + N A + L + SLHRR LK ++A +++L+
Sbjct: 129 DVDTYEPDLRINVHLHKNRATLSLDSSGDSLHRRGYRPAVGAAPLKESLAAALIQLSGWQ 188
Query: 311 PGDVFLDPMCGGGTIPVECSL 331
P F DP+CG GT+P+E L
Sbjct: 189 PNQAFFDPLCGSGTLPLEAGL 209
>gi|428304384|ref|YP_007141209.1| rRNA (guanine-N(2)-)-methyltransferase [Crinalium epipsammum PCC
9333]
gi|428245919|gb|AFZ11699.1| rRNA (guanine-N(2)-)-methyltransferase [Crinalium epipsammum PCC
9333]
Length = 374
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 18/132 (13%)
Query: 201 CSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDI 260
C+ NQK N T+ T +V V + +R+ GK + +D+++ D+
Sbjct: 95 CTGSNQKLNHTH---------FTALQVKNAIV---DQQRSQSGKRSS-----IDIENPDL 137
Query: 261 DINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPM 319
IN+ I + + L + TSLHRR + LK T+A ++ +A FLDP+
Sbjct: 138 LINVHIHQDRCILSLDSSGTSLHRRGYRPAMGLAPLKETLAAAILDMAEWDASLPFLDPL 197
Query: 320 CGGGTIPVECSL 331
CG GT+P+E L
Sbjct: 198 CGSGTLPIEAGL 209
>gi|300864392|ref|ZP_07109264.1| putative enzyme [Oscillatoria sp. PCC 6506]
gi|300337618|emb|CBN54410.1| putative enzyme [Oscillatoria sp. PCC 6506]
Length = 403
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 28/166 (16%)
Query: 177 VNNVQIEKGDLQNQELKEIDINSM----------CSSQNQKTNFTNPEENLLKFRVTCNR 226
+ Q + D+ +E+++ID C+ NQK N T+ +K + +
Sbjct: 90 IAEFQCDDSDMLYREVQKIDWEEYLDTDNTLAVDCTGGNQKLNHTHYTALQVKNSIADRQ 149
Query: 227 VGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRN 286
G FG + N VD + D+ IN+ I + + L + SLHRR
Sbjct: 150 RGN-----------FGKRSN------VDTKNPDLLINVHIHKDRCILSLDSSGGSLHRRG 192
Query: 287 I-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
LK T+A ++ +A P FLDPMCG GT+P+E L
Sbjct: 193 YRPAVGAAPLKETLAAALLEMAEWNPNLPFLDPMCGSGTLPLEAGL 238
>gi|448622376|ref|ZP_21669070.1| RNA methylase [Haloferax denitrificans ATCC 35960]
gi|445754458|gb|EMA05863.1| RNA methylase [Haloferax denitrificans ATCC 35960]
Length = 321
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 24/179 (13%)
Query: 228 GKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
G +++ ++ER G L + F VDLDD D ++ + + VG + R+
Sbjct: 90 GLTDISTTDAERELGSALVERGFG-VDLDDPDHELRVYFSEDACLVGWTAVEAV---RDF 145
Query: 288 VE--------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFV 339
+ F ++ P A V +A PG LDPMCG G + +E L V
Sbjct: 146 ADRKPTDRPFFQPGSMAPVDARAFVNMAGAEPGARILDPMCGTGGVLLEAGLVGADVVGV 205
Query: 340 CGDINEKLVLKTQANVLH--NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK 396
D K+V + N+ H SG++ R + L F +DG V D P+G+
Sbjct: 206 --DAQAKMVGGARENLRHYVGSGDVVR--------GDATALPFSDDSMDGAVFDAPYGR 254
>gi|37523610|ref|NP_926987.1| hypothetical protein glr4041 [Gloeobacter violaceus PCC 7421]
gi|35214615|dbj|BAC91982.1| glr4041 [Gloeobacter violaceus PCC 7421]
Length = 374
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD D+ +N+ I + A + L + SLHRR LK T+A ++ LA P
Sbjct: 130 VDAHRPDVRLNIHIDNDRAVLSLDSSGESLHRRGYRPAMGAAPLKETLAAALIELAGWDP 189
Query: 312 GDVFLDPMCGGGTIPVECS 330
F+DP+CG GT+P+E +
Sbjct: 190 AQAFVDPLCGSGTLPLEAA 208
>gi|452210069|ref|YP_007490183.1| tRNA-(G10-N2) methyltransferase; tRNA-(G10-N2) dimethyltransferase
[Methanosarcina mazei Tuc01]
gi|452099971|gb|AGF96911.1| tRNA-(G10-N2) methyltransferase; tRNA-(G10-N2) dimethyltransferase
[Methanosarcina mazei Tuc01]
Length = 348
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 11/145 (7%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F+ L P +A + L+ PG++FLDP CG I VE L + D EKLVL
Sbjct: 177 FHPGVLMPRVARALTNLSGIKPGELFLDPFCGTAGILVEAGLVGAKVVGI--DAQEKLVL 234
Query: 350 KTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNF-LLY 408
N+ EL+ + + ++ K +D +VTD P+G+ +++ LY
Sbjct: 235 GAHMNL------EAYELEYFLMEGDACRIPLKDCTIDAVVTDPPYGRSAAILASSLEELY 288
Query: 409 RLFLIEIGKIVRPQIGRAILLTSDR 433
L EI ++++P G ++ SD+
Sbjct: 289 SGALSEIQRVLKP--GGIAVIVSDK 311
>gi|126659687|ref|ZP_01730816.1| hypothetical protein CY0110_29174 [Cyanothece sp. CCY0110]
gi|126619032|gb|EAZ89772.1| hypothetical protein CY0110_29174 [Cyanothece sp. CCY0110]
Length = 375
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Query: 220 FRVTC---NRVGKHT-VTSMESERAFGGKLNDTYFWL--VDLDDYDIDINLQIRYNEAYV 273
F V C N+ HT T+++ + A + D Y +D+ + DI IN I +E +
Sbjct: 92 FAVNCTGKNQQLNHTHFTALQIKNAIVDQQRDRYNRRSNIDVKNPDILINAHIYEDECII 151
Query: 274 GLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
L + SLHRR + LK ++A ++ +A+ P FLDPMCG G +P+E +
Sbjct: 152 SLDSSGDSLHRRGYRPAMGVAPLKESLAAALLEMANWTPDIPFLDPMCGSGILPIEAAF 210
>gi|448582757|ref|ZP_21646261.1| RNA methylase [Haloferax gibbonsii ATCC 33959]
gi|445732405|gb|ELZ83988.1| RNA methylase [Haloferax gibbonsii ATCC 33959]
Length = 318
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 107/252 (42%), Gaps = 30/252 (11%)
Query: 228 GKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
G +++ ++ER G L D F VDLDD D ++ + + VG + R+
Sbjct: 87 GLTDISTTDAERELGSALVDRGFG-VDLDDPDHELRVYFSEDTCLVGWTAVEAV---RDF 142
Query: 288 VE--------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFV 339
+ F ++ P A V +A PG LDPMCG G + +E L V
Sbjct: 143 ADRKPTDRPFFQPGSMAPVDARAFVNMAGAEPGARILDPMCGTGGVLLEAGLVGADVVGV 202
Query: 340 CGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVG 399
D K+V + N+ H G+ + + + L + +DG V D P+G++
Sbjct: 203 --DAQAKMVGGARENLRHYVGDGD------VIRGDATALPLRDDSMDGAVFDAPYGRQ-- 252
Query: 400 SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRK--QIKINM 457
SK L L + ++ R + ++ +DR +A A W+ + + +++
Sbjct: 253 SKIARHSLSDLVGGALAEVRR--VAPECVMVADRSWTEEA---EDAGWEVERVFERRVHR 307
Query: 458 SGMKSFVFILNR 469
S + +V +L+R
Sbjct: 308 S-LVRYVHLLHR 318
>gi|409989707|ref|ZP_11273221.1| RNA methylase [Arthrospira platensis str. Paraca]
gi|291570547|dbj|BAI92819.1| hypothetical protein [Arthrospira platensis NIES-39]
gi|409939430|gb|EKN80580.1| RNA methylase [Arthrospira platensis str. Paraca]
Length = 374
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD+ D D+ INL I N + L + SLHRR LK ++A ++ LA
Sbjct: 130 VDVLDADLHINLHINGNHGILSLDSSGPSLHRRGYRPAVGKAPLKESLAAGLLHLAQWQG 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDP+CG GT+P+E +L
Sbjct: 190 DRPFLDPLCGSGTLPLEATL 209
>gi|365902773|ref|ZP_09440596.1| hypothetical protein LmalK3_04429 [Lactobacillus malefermentans
KCTC 3548]
Length = 377
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 109/249 (43%), Gaps = 51/249 (20%)
Query: 230 HTVTSMES--ERAFGGKLNDTYFWLVDLDDYD--IDINLQIRYNEAYVGLPVTQTSLHRR 285
H+V ++S ++A KL+ Y L + + + IR ++ V L T SL +R
Sbjct: 104 HSVPDIQSISKKAIVNKLSAVYHRRTRLPETGAMFPVEVAIRDDQVMVTLDTTGDSLFKR 163
Query: 286 NIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTF------- 337
E T +K +A ++++ + P F DP CG GTIP+E +L H
Sbjct: 164 GYREAKGTAPMKENMAAALIKITNWYPDMPFADPTCGSGTIPIEAAL-IGHNIAPGINRS 222
Query: 338 FVC-------GDINEKLVLKTQANVLHN----------SGNLNRELKVSPLVCNV----- 375
FVC I+EKL + + H+ G++ KV+ V
Sbjct: 223 FVCEGWHQDYQKISEKLREEARQAENHDIDLDIFASDIDGSMIDVAKVNANAAGVLHDID 282
Query: 376 -RQLCFKPACVDGI----VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430
+QL + D I +++ P+G+R+ K + L+YR ++GK+ +P LT
Sbjct: 283 FKQLAVQDFTTDKINGVMISNPPYGERMKDKESVELMYR----QMGKVFKP-------LT 331
Query: 431 SDRKHLIQA 439
S K++I A
Sbjct: 332 SWSKYIITA 340
>gi|423065909|ref|ZP_17054699.1| putative RNA methylase [Arthrospira platensis C1]
gi|406712667|gb|EKD07851.1| putative RNA methylase [Arthrospira platensis C1]
Length = 374
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 185 GDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHT-VTSMESERAFGG 243
GD +E+++ID + P + L NR HT T+++ + A
Sbjct: 69 GDRLYKEVQKIDWE----------EYIKPHQTLSVHCTGKNRQLNHTHFTALQVKNAIVD 118
Query: 244 KLNDTYFW--LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIA 300
+ D + VD+ D D+ INL I N + L + SLHRR LK ++A
Sbjct: 119 QQRDKFSQRSTVDILDADLHINLHINGNHGILSLDSSGPSLHRRGYRPAVGKAPLKESLA 178
Query: 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
++ LA FLDP+CG GT+P+E +L
Sbjct: 179 AGLLDLAQWQGDRPFLDPLCGSGTLPLEATL 209
>gi|376004341|ref|ZP_09782055.1| putative methylase [Arthrospira sp. PCC 8005]
gi|375327233|emb|CCE17808.1| putative methylase [Arthrospira sp. PCC 8005]
Length = 374
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 185 GDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHT-VTSMESERAFGG 243
GD +E+++ID + P + L NR HT T+++ + A
Sbjct: 69 GDRLYKEVQKIDWE----------EYIKPHQTLSVHCTGKNRQLNHTHFTALQVKNAIVD 118
Query: 244 KLNDTYFW--LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIA 300
+ D + VD+ D D+ INL I N + L + SLHRR LK ++A
Sbjct: 119 QQRDKFSQRSTVDILDADLHINLHINGNHGILSLDSSGPSLHRRGYRPAVGKAPLKESLA 178
Query: 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
++ LA FLDP+CG GT+P+E +L
Sbjct: 179 AGLLDLAQWQGDRPFLDPLCGSGTLPLEATL 209
>gi|428313285|ref|YP_007124262.1| N6-adenine-specific DNA methylase [Microcoleus sp. PCC 7113]
gi|428254897|gb|AFZ20856.1| putative N6-adenine-specific DNA methylase [Microcoleus sp. PCC
7113]
Length = 374
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+ I + + L + SLHRR + LK T+A ++ +A P
Sbjct: 130 VDTENPDLLINVHIYQDRCILSLDSSGASLHRRGYRPAMGLAPLKETLAAALLDMAEWEP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDP+CG GT+P+E SL
Sbjct: 190 NLPFLDPLCGSGTLPLEASL 209
>gi|292654335|ref|YP_003534232.1| N2-methylguanosine tRNA methyltransferase [Haloferax volcanii DS2]
gi|291370624|gb|ADE02851.1| N2-methylguanosine tRNA methyltransferase [Haloferax volcanii DS2]
Length = 321
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 24/179 (13%)
Query: 228 GKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
G +++ ++ER G L D F VDLDD D ++ + + VG + R+
Sbjct: 90 GLTGISTTDAERELGSALVDRGFG-VDLDDPDHELRVCFSEDACLVGWTAVEAV---RDF 145
Query: 288 VE--------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFV 339
+ F ++ P A V +A PG LDPMCG G + +E L V
Sbjct: 146 TDRKPTDRPFFQPGSMAPVDARAFVNMAGAEPGARILDPMCGTGGVLLEAGLVGADVVGV 205
Query: 340 CGDINEKLVLKTQANVLH--NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK 396
D K+V + N+ H SG++ R + L + +DG V D P+G+
Sbjct: 206 --DAQAKMVGGARENLRHYVGSGDVVR--------GDATALPLRDDSMDGAVFDAPYGR 254
>gi|448293879|ref|ZP_21483982.1| RNA methylase [Haloferax volcanii DS2]
gi|445569800|gb|ELY24371.1| RNA methylase [Haloferax volcanii DS2]
Length = 318
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 24/179 (13%)
Query: 228 GKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
G +++ ++ER G L D F VDLDD D ++ + + VG + R+
Sbjct: 87 GLTGISTTDAERELGSALVDRGFG-VDLDDPDHELRVCFSEDACLVGWTAVEAV---RDF 142
Query: 288 VE--------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFV 339
+ F ++ P A V +A PG LDPMCG G + +E L V
Sbjct: 143 TDRKPTDRPFFQPGSMAPVDARAFVNMAGAEPGARILDPMCGTGGVLLEAGLVGADVVGV 202
Query: 340 CGDINEKLVLKTQANVLH--NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK 396
D K+V + N+ H SG++ R + L + +DG V D P+G+
Sbjct: 203 --DAQAKMVGGARENLRHYVGSGDVVR--------GDATALPLRDDSMDGAVFDAPYGR 251
>gi|434394558|ref|YP_007129505.1| rRNA (guanine-N(2)-)-methyltransferase [Gloeocapsa sp. PCC 7428]
gi|428266399|gb|AFZ32345.1| rRNA (guanine-N(2)-)-methyltransferase [Gloeocapsa sp. PCC 7428]
Length = 374
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD+ + D+ IN+ I N V L + TSLHRR + LK T+A ++ +
Sbjct: 130 VDVQNPDVAINVHIHQNRCTVSLDSSGTSLHRRGYRQAMGAAPLKETLAAALLDIVEWNT 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDP+CG GT+P+E +L
Sbjct: 190 NLPFLDPLCGSGTLPIEAAL 209
>gi|209523620|ref|ZP_03272174.1| putative RNA methylase [Arthrospira maxima CS-328]
gi|209496025|gb|EDZ96326.1| putative RNA methylase [Arthrospira maxima CS-328]
Length = 361
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD+ D D+ INL I N + L + SLHRR LK ++A ++ LA
Sbjct: 130 VDILDADLHINLHINGNHGILSLDSSGPSLHRRGYRPAVGKAPLKESLAAGLLDLAQWQG 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDP+CG GT+P+E +L
Sbjct: 190 DRPFLDPLCGSGTLPLEATL 209
>gi|321464702|gb|EFX75708.1| hypothetical protein DAPPUDRAFT_107627 [Daphnia pulex]
Length = 700
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 8/149 (5%)
Query: 252 LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIP 311
++D+ D D++I L + + VGL VT+ L R+ + N ++ T+ M
Sbjct: 145 VIDVRDPDLEIFLHLNDSFLTVGLQVTKKPLSHRSYL--NHILVRSTVCVAMCMAVDLSS 202
Query: 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371
DV LDPMCG TI VE + V D + L LK + L S + L
Sbjct: 203 KDVILDPMCGAATILVEAIKQFNCKAAVGVDCD-PLQLKLAQDNLSTS----LAFRHVDL 257
Query: 372 VC-NVRQLCFKPACVDGIVTDLPFGKRVG 399
+C + + FK D ++ D+PFG++ G
Sbjct: 258 ICGDSSSIIFKDQWFDVVLCDVPFGRKFG 286
>gi|448597728|ref|ZP_21654653.1| RNA methylase [Haloferax alexandrinus JCM 10717]
gi|445739189|gb|ELZ90698.1| RNA methylase [Haloferax alexandrinus JCM 10717]
Length = 318
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 24/179 (13%)
Query: 228 GKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
G +++ ++ER G L + F VDLDD D ++ + + VG + R+
Sbjct: 87 GLAGISTTDAERELGSALVERGFG-VDLDDPDHELRVYFSEDACLVGWTAVEAV---RDF 142
Query: 288 VE--------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFV 339
+ F ++ P A V +A PG LDPMCG G + +E L V
Sbjct: 143 TDRKPTDRPFFQPGSMAPVDARAFVNMAGAEPGARILDPMCGTGGVLLEAGLVGADVVGV 202
Query: 340 CGDINEKLVLKTQANVLH--NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK 396
D K+V + N+ H SG++ R + L + +DG V D P+G+
Sbjct: 203 --DAQAKMVGGARENLRHYVGSGDVVR--------GDATALPLRDDSMDGAVFDAPYGR 251
>gi|218246111|ref|YP_002371482.1| RNA methylase [Cyanothece sp. PCC 8801]
gi|257059162|ref|YP_003137050.1| RNA methylase [Cyanothece sp. PCC 8802]
gi|218166589|gb|ACK65326.1| putative RNA methylase [Cyanothece sp. PCC 8801]
gi|256589328|gb|ACV00215.1| putative RNA methylase [Cyanothece sp. PCC 8802]
Length = 375
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 117/271 (43%), Gaps = 47/271 (17%)
Query: 206 QKTNFTNPEENLLKFRVTC----NRVGKHTVTSMESERAFGGKLNDTYFWL--VDLDDYD 259
QK N++ E FRV C N + T+++ + A + + +DL+ +
Sbjct: 78 QKINWSEYLEPDQTFRVNCTGSNNNLNHTHFTALQIKNAIVDQQTRVFKQRSDIDLNAPN 137
Query: 260 IDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDP 318
I IN I N + L + SLHRR + LK T+A ++ +A+ FLDP
Sbjct: 138 IIINAHINGNHCLLSLDSSGESLHRRGYRPAMGLAPLKETLASALLAMANWDGNLPFLDP 197
Query: 319 MCGGGTIPVECSL--------------SYPHTFFVCGDINEKLVLKTQ----ANVLHNSG 360
MCG G +P+E +L S+ H + K+V + + A + H
Sbjct: 198 MCGSGILPIEAALKALNIAPGLYRNHFSFQHWKDFDQSLYNKIVTEAKNQQLAKIKHPIF 257
Query: 361 NLNRELKV------SPLVCNV------RQLCF---KPACVDG-IVTDLPFGKRVGSKSNN 404
+++L V + C V Q+ +P +G I+ + P+GKR+G+
Sbjct: 258 GSDKDLSVIQQARSNATACGVDKEIKLAQISLEKIEPPTTEGIIICNPPYGKRIGNTEEL 317
Query: 405 FLLYRLFLIEIGKIVRPQI--GRAILLTSDR 433
LY+L +G I++ + A +LT+++
Sbjct: 318 GALYKL----LGDILKQRFKGWTAYILTANK 344
>gi|433431468|ref|ZP_20407662.1| RNA methylase, partial [Haloferax sp. BAB2207]
gi|432193948|gb|ELK50620.1| RNA methylase, partial [Haloferax sp. BAB2207]
Length = 252
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 76/180 (42%), Gaps = 24/180 (13%)
Query: 228 GKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
G +++ ++ER G L + F VDLDD D ++ + + VG + R+
Sbjct: 21 GLTGISTTDAERELGSALVERGFG-VDLDDPDHELRVYFSEDACLVGWTAVEAV---RDF 76
Query: 288 VE--------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFV 339
+ F ++ P A V +A PG LDPMCG G + +E L V
Sbjct: 77 TDRKPTDRPFFQPGSMAPVDARAFVNMAGAEPGARILDPMCGTGGVLLEAGLVGADVVGV 136
Query: 340 CGDINEKLVLKTQANVLH--NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397
D K+V + N+ H SG++ R + L + +DG V D P+G++
Sbjct: 137 --DAQAKMVGGARENLRHYVGSGDVVR--------GDATALPLRDDSMDGAVFDAPYGRQ 186
>gi|434400663|ref|YP_007134667.1| rRNA (guanine-N(2)-)-methyltransferase [Stanieria cyanosphaera PCC
7437]
gi|428271760|gb|AFZ37701.1| rRNA (guanine-N(2)-)-methyltransferase [Stanieria cyanosphaera PCC
7437]
Length = 373
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 236 ESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITT 294
+ ++ FG + N + D D+ +N I N + L + +SLHRR +
Sbjct: 119 QQQKQFGERSN------IQTDHPDLLVNAHINNNFCTISLDSSGSSLHRRGYRPAMGLAP 172
Query: 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
LK T+A ++ +A P FLDP+CG GT+P+E +L
Sbjct: 173 LKETLAVALLDMAEWKPNLPFLDPLCGSGTLPIEAAL 209
>gi|448573581|ref|ZP_21641064.1| RNA methylase [Haloferax lucentense DSM 14919]
gi|445718487|gb|ELZ70177.1| RNA methylase [Haloferax lucentense DSM 14919]
Length = 318
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 24/179 (13%)
Query: 228 GKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
G +++ ++ER G L + F VDLDD D ++ + + VG + R+
Sbjct: 87 GLTGISTTDAERELGSALVERGFG-VDLDDPDHELRVYFSEDACLVGWTAVEAV---RDF 142
Query: 288 VE--------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFV 339
+ F ++ P A V +A PG LDPMCG G + +E L V
Sbjct: 143 TDRKPTDRPFFQPGSMAPVDARAFVNMAGAEPGARILDPMCGTGGVLLEAGLVGADVVGV 202
Query: 340 CGDINEKLVLKTQANVLH--NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK 396
D K+V + N+ H SG++ R + L + +DG V D P+G+
Sbjct: 203 --DAQAKMVGGARENLRHYVGSGDVVR--------GDATALPLRDDSMDGAVFDAPYGR 251
>gi|124485247|ref|YP_001029863.1| hypothetical protein Mlab_0420 [Methanocorpusculum labreanum Z]
gi|124362788|gb|ABN06596.1| putative RNA methylase [Methanocorpusculum labreanum Z]
Length = 317
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 99/220 (45%), Gaps = 31/220 (14%)
Query: 224 CNRVGK-HTVT----SMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVG---L 275
C RV K H VT +E ER G K++ T VDL+ D++ + G
Sbjct: 82 CCRVRKIHPVTVNASQLELERMMGQKIHGT----VDLNTPDVEYRAVFTNGRCFFGEVLH 137
Query: 276 PVTQTSLHRRNIVE---FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS 332
+ + S RN F+ + P +A MV L PG+ DP CG G + +EC +
Sbjct: 138 TIDRGSYAYRNPQRRAFFHPGVMMPLMARTMVNLTHVEPGEKLCDPFCGTGGMLLECEMM 197
Query: 333 YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDL 392
V D + ++++ + N L N + + P + D I TDL
Sbjct: 198 GIDA--VGSDYDPEMLIGCKQN-LPNGACIRADATKMP---------YPDEAFDAIATDL 245
Query: 393 PFGKR--VGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430
P+G+ +G++S + LY L EI ++++ Q GRA+++T
Sbjct: 246 PYGQSTTIGAESID-TLYTESLKEIRRVLK-QGGRAVIVT 283
>gi|172039639|ref|YP_001806140.1| hypothetical protein cce_4726 [Cyanothece sp. ATCC 51142]
gi|354552106|ref|ZP_08971414.1| rRNA (guanine-N(2)-)-methyltransferase [Cyanothece sp. ATCC 51472]
gi|171701093|gb|ACB54074.1| unknown [Cyanothece sp. ATCC 51142]
gi|353555428|gb|EHC24816.1| rRNA (guanine-N(2)-)-methyltransferase [Cyanothece sp. ATCC 51472]
Length = 375
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+D+ + DI IN I ++ + L + SLHRR + LK ++A ++ +A+ P
Sbjct: 131 IDVKNPDILINAHIYEDQCILSLDSSGDSLHRRGYRPAMGVAPLKESLAAALLEMANWTP 190
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG G +P+E +L
Sbjct: 191 DIPFLDPMCGSGILPIEAAL 210
>gi|427734842|ref|YP_007054386.1| putative N6-adenine-specific DNA methylase [Rivularia sp. PCC 7116]
gi|427369883|gb|AFY53839.1| putative N6-adenine-specific DNA methylase [Rivularia sp. PCC 7116]
Length = 374
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
V+L + D+ IN+ IR + V L + SLHRR LK ++A ++ L+ P
Sbjct: 130 VELYNPDLRINVHIRNDFCTVSLDSSGKSLHRRGYRPAVGAAPLKESLAAALIELSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
+F DP+CG GT+P+E L
Sbjct: 190 DQMFYDPLCGSGTLPIEACL 209
>gi|55379443|ref|YP_137293.1| RNA methylase [Haloarcula marismortui ATCC 43049]
gi|55232168|gb|AAV47587.1| putative RNA methylase [Haloarcula marismortui ATCC 43049]
Length = 558
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 96/240 (40%), Gaps = 35/240 (14%)
Query: 232 VTSMESERAFGGKLNDTYFWLVDLDD---------YDIDINLQIRYNEAYVGLP-VTQTS 281
+ + ++ER GG L D F VDLDD D D + + EA L +T S
Sbjct: 308 IDTQQAERTLGGVLTDRGF-AVDLDDPDHVLYAYLSDPDGDEEGGTGEACCALGWLTAES 366
Query: 282 LH---RRNIVE---FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH 335
+ R + F ++ P A +V +A P LDPMCG G + +E L
Sbjct: 367 VRDFGGRQPTDRPFFQPGSMDPLEARALVNIAGAGPDATILDPMCGTGGLLLEAGLVG-- 424
Query: 336 TFFVCGDINEKLVLKTQAN---VLHNSGNLNRELKVSP-----LVCNVRQLCFKPACVDG 387
V GD EK+V T+ N L G+ R P + L VD
Sbjct: 425 ADVVGGDAQEKMVSGTRKNLAYALDGDGHPERASYPDPGEWGVFRSDASALPVADDTVDA 484
Query: 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALW 447
+V D P+G++ + + L L E ++ GR +L+ +DR A T A W
Sbjct: 485 VVFDAPYGRQSRIEGDLAPLVSGALGEAARVA----GRCVLV-ADRDWREAA---TGAGW 536
>gi|428774118|ref|YP_007165906.1| rRNA (guanine-N(2)-)-methyltransferase [Cyanobacterium stanieri PCC
7202]
gi|428688397|gb|AFZ48257.1| rRNA (guanine-N(2)-)-methyltransferase [Cyanobacterium stanieri PCC
7202]
Length = 374
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 10/131 (7%)
Query: 208 TNFTNPEENLLKFRVTCN----RVGKHTVTSMESERAFGGKLNDTYFWLVDLD--DYDID 261
+++ NP + L V C R+ T+++ + A + + Y D+D + DI
Sbjct: 83 SSYINPSQTLA---VHCTGKSPRLNHSHFTALQVKNAIVDQQQEKYGTRSDIDTQNPDII 139
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
IN IR N+ + L + SLHRR + LK T+A ++ + P +DP+C
Sbjct: 140 INAHIRENKCTLSLDSSGDSLHRRGYHPAMGMAPLKETLAAALLYMTDWTPELPLIDPLC 199
Query: 321 GGGTIPVECSL 331
G GT P+E +L
Sbjct: 200 GSGTFPIEATL 210
>gi|335996606|ref|ZP_08562523.1| site-specific DNA-methyltransferase [Lactobacillus ruminis SPM0211]
gi|335351676|gb|EGM53167.1| site-specific DNA-methyltransferase [Lactobacillus ruminis SPM0211]
Length = 378
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 104/245 (42%), Gaps = 45/245 (18%)
Query: 230 HTVTSMES--ERAFGGKLNDTYFWLVDLDDYDI--DINLQIRYNEAYVGLPVTQTSLHRR 285
H V S++S ++A K+ YF L + I I ++ + L T +SL +R
Sbjct: 104 HNVPSVQSIVKKAIVDKMCTVYFRRTQLPETGALYPIECAINKDKVMLTLDTTGSSLFKR 163
Query: 286 NI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTF------- 337
E LK +A +V ++ P F+DP+CG GTIP+E +L H
Sbjct: 164 GYRTEKGGAPLKENMAAALVLISHWYPEQTFVDPVCGSGTIPIEAAL-IGHNIAPGLNRQ 222
Query: 338 FVCG--DINEKLVLKTQANVLHNSGNLNRELKVSPL---------------------VCN 374
F CG ++ E + + + +++R+L + N
Sbjct: 223 FACGKWELVEAGLEEKIREEARSKADMSRKLDIWGYDIDGRMVEIARRNSAAAGVRSSIN 282
Query: 375 VRQLCFKPACVDG----IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRP-QIGRAILL 429
++Q+ K D IV + P+G+R+ S+ LYR ++G+I RP + +L
Sbjct: 283 LKQMALKDFKTDKEYGVIVANPPYGERLSSRDEVHKLYR----QMGEIYRPLETWGKYIL 338
Query: 430 TSDRK 434
TSD K
Sbjct: 339 TSDLK 343
>gi|416387984|ref|ZP_11685089.1| hypothetical protein CWATWH0003_1917 [Crocosphaera watsonii WH
0003]
gi|357264518|gb|EHJ13400.1| hypothetical protein CWATWH0003_1917 [Crocosphaera watsonii WH
0003]
Length = 375
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+D+ D DI IN I ++ + L + SLHRR LK ++A ++ +A+ P
Sbjct: 131 IDVKDPDILINAHIYDHQCILSLDSSGESLHRRGYRPAMGDAPLKESLAAALLEMANWTP 190
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG G +P+E +L
Sbjct: 191 DIPFLDPMCGSGILPIEAAL 210
>gi|224003309|ref|XP_002291326.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973102|gb|EED91433.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 762
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 26/199 (13%)
Query: 293 TTLKPTIAYNMVRLASPIPGD------VFLDPMCGGGTIPVECS--LSYPHTFFVCGDIN 344
+++KP +A M GD V ++ M G GTI +E S SYP F V GD
Sbjct: 519 SSVKPQVALAMSSAVLADEGDGTKRSTVVVNLMSGEGTIELESSRATSYPF-FLVSGDKC 577
Query: 345 EKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFG--------- 395
+ KT + N V ++ + + L + DGI+ DLPF
Sbjct: 578 IESARKTAWRIEALKRNSKCNTLVDVVIWDAQHLPLREGIADGILADLPFQGGSTSKTHQ 637
Query: 396 ----KRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRK 451
+++ K++ L Y L E +I+RP+ GRA LL+ D K L A ++ + W
Sbjct: 638 QPSMRKIDDKASPPLSYSRVLSEASRILRPK-GRAALLSPDFKALRFASNVFN--WTLLG 694
Query: 452 QIK-INMSGMKSFVFILNR 469
+ IN+ G+ + +F++ R
Sbjct: 695 YAQDINVGGLTAKMFLMQR 713
>gi|67920830|ref|ZP_00514349.1| Putative RNA methylase:THUMP [Crocosphaera watsonii WH 8501]
gi|67856947|gb|EAM52187.1| Putative RNA methylase:THUMP [Crocosphaera watsonii WH 8501]
Length = 375
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+D+ D DI IN I ++ + L + SLHRR LK ++A ++ +A+ P
Sbjct: 131 IDVKDPDILINAHIYDHQCILSLDSSGESLHRRGYRPAMGDAPLKESLAAALLEMANWTP 190
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG G +P+E +L
Sbjct: 191 DIPFLDPMCGSGILPIEAAL 210
>gi|294904385|ref|XP_002777583.1| hypothetical protein Pmar_PMAR025951 [Perkinsus marinus ATCC 50983]
gi|239885390|gb|EER09399.1| hypothetical protein Pmar_PMAR025951 [Perkinsus marinus ATCC 50983]
Length = 411
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 122/290 (42%), Gaps = 43/290 (14%)
Query: 186 DLQNQELKEIDINSMCSSQNQKTNFTNPEENL-------LKFRVTCNRVG-KHTVTSMES 237
DL ++ I I +M +K+++ EE + FR +C R G KH S +
Sbjct: 89 DLDVADISPIVIETM---MFEKSDWRCAEEIVGIHADTPYSFRASCVRDGAKHDFKSYDV 145
Query: 238 ERAFG-GKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPV---TQTSLHRRNIVEFNI- 292
R G L W V L +++ + ++G+ V + S R +FN+
Sbjct: 146 MRTMGHAVLMRHPDWNVSLGHSEVEYVGIVFERSVFLGIAVGKPQRGSRARPEKADFNVV 205
Query: 293 ------------------TTLKPTIAYNMVRLAS---PIPGDVFLDPMCGGGTIPVECSL 331
T ++P++A ++ A+ P+ G++ LD M G GTIP+E +
Sbjct: 206 PYCDYMSRDLQLGSVPHCTKMRPSVALLLLLFATDGFPMHGNM-LDIMGGLGTIPIEAAT 264
Query: 332 SYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKPACVDGIV 389
++ + + GDIN + N +L + V + L +D IV
Sbjct: 265 NFTNVNALSGDINRATTSQAIKNCQLARPHLAQGSSVHARDWDAAYLDTYVDNDSIDWIV 324
Query: 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQA 439
TDLPFG R K + + R+ L + +++P GR +LL+ K L A
Sbjct: 325 TDLPFGNRTELKKAD--MARV-LRAVSMVLKPDTGRCVLLSKGYKRLDTA 371
>gi|443478587|ref|ZP_21068323.1| rRNA (guanine-N(2)-)-methyltransferase [Pseudanabaena biceps PCC
7429]
gi|443016105|gb|ELS30839.1| rRNA (guanine-N(2)-)-methyltransferase [Pseudanabaena biceps PCC
7429]
Length = 374
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 10/144 (6%)
Query: 190 QELKEIDINSMCSSQ-NQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDT 248
Q +K ID + + + N T + L T +V K+ + + +R FG + +
Sbjct: 74 QGIKAIDWSEFLTPEMTLAVNATGKNDQLNHTHFTALKV-KNAIVDQQMDR-FGERSD-- 129
Query: 249 YFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLA 307
VD + D+ I + I N V L + SLHRR LK ++A +++++
Sbjct: 130 ----VDTHEADLRIGVHIDDNGCTVSLDSSGNSLHRRGYRPAVGAAPLKESLAAALIQMS 185
Query: 308 SPIPGDVFLDPMCGGGTIPVECSL 331
P +F DP+CG GT+P+E SL
Sbjct: 186 GWQPDQMFYDPLCGSGTLPLEASL 209
>gi|406027003|ref|YP_006725835.1| site-specific DNA-methyltransferase [Lactobacillus buchneri CD034]
gi|405125492|gb|AFS00253.1| putative site-specific DNA-methyltransferase [Lactobacillus
buchneri CD034]
Length = 386
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 43/242 (17%)
Query: 230 HTVTSMES--ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPV--TQTSLHRR 285
H+V ++ ++A +L+ Y L + + L++ N+ +V L + T +SL +R
Sbjct: 103 HSVPDSQAIVKKAIVNELSTAYHRHTRLPETGAEFPLEVAINKDHVMLTMDTTGSSLFKR 162
Query: 286 NI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL---SYPHTF---F 338
+E LK +A +V L S P FLDP CG GTIP+E ++ + F F
Sbjct: 163 GYRIEKGSAPLKENMAAALVMLTSWYPDMPFLDPFCGSGTIPIEAAMIGRNIAPGFNRDF 222
Query: 339 VC-------GDINEKLVLKTQANVLHN----------SGNL----NRELKVSPLVCNV-- 375
+C D+ +K+ + A ++ GN+ R + + L+ ++
Sbjct: 223 ICEQWPWIDHDMAQKVRDEADAKADYDIELDISASDIDGNMIEISKRNAEEAGLLADIQF 282
Query: 376 RQLC---FKPACVDG-IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA-ILLT 430
+QL FK V+G IV + P+G+R+ + + LY+ ++GK+ P + LT
Sbjct: 283 KQLAVADFKTDKVNGVIVGNPPYGQRMSDEEHAHELYK----QMGKVFNPLTSWSKYFLT 338
Query: 431 SD 432
SD
Sbjct: 339 SD 340
>gi|428225553|ref|YP_007109650.1| rRNA (guanine-N(2)-)-methyltransferase [Geitlerinema sp. PCC 7407]
gi|427985454|gb|AFY66598.1| rRNA (guanine-N(2)-)-methyltransferase [Geitlerinema sp. PCC 7407]
Length = 374
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 229 KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI- 287
K + + ERA G + N VD D+ +N+ I + V L + SLHRR
Sbjct: 113 KKAIVEQQQERA-GERSN------VDTVAPDVRVNVHIDRSGCTVSLDSSGNSLHRRGYR 165
Query: 288 VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
LK ++A +++L+ P +F DP+CG GT+P+E SL
Sbjct: 166 PAMGAAPLKESLAAALIQLSGWQPDQMFYDPLCGSGTLPLEASL 209
>gi|21227598|ref|NP_633520.1| methyltransferase [Methanosarcina mazei Go1]
gi|20905984|gb|AAM31192.1| putative methyltransferase [Methanosarcina mazei Go1]
Length = 348
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 11/145 (7%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F+ L P +A + L+ PG++FLDP CG I VE L + D EKLVL
Sbjct: 177 FHPGVLMPRVARALTNLSGIKPGELFLDPFCGTAGILVEAGLVGAKVVGI--DAQEKLVL 234
Query: 350 KTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNF-LLY 408
N+ EL + + ++ K +D +VTD P+G+ +++ LY
Sbjct: 235 GAYMNL------EAYELDYFLMEGDACRIPLKDYTIDAVVTDPPYGRSAAILASSLEELY 288
Query: 409 RLFLIEIGKIVRPQIGRAILLTSDR 433
L EI ++++P G ++ SD+
Sbjct: 289 SGALSEIQRVLKP--GGIAVVVSDK 311
>gi|62702138|gb|AAX93065.1| unknown [Homo sapiens]
Length = 206
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 13/126 (10%)
Query: 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371
G LDPMCG GTI +E + +P ++V D+++ +L T N L +G E K+ L
Sbjct: 2 GAFVLDPMCGLGTILLEAAKEWPDVYYVGADVSDSQLLGTWDN-LKAAG---LEDKIELL 57
Query: 372 VCNVRQLCFKPACVDGIVTDLPFGK--RVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429
+V +L VD I++D+PFGK ++G + L ++ +G G +LL
Sbjct: 58 KISVIELPLPSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVG-------GTIVLL 110
Query: 430 TSDRKH 435
S+ H
Sbjct: 111 LSEDHH 116
>gi|448638898|ref|ZP_21676568.1| RNA methylase [Haloarcula sinaiiensis ATCC 33800]
gi|445763230|gb|EMA14433.1| RNA methylase [Haloarcula sinaiiensis ATCC 33800]
Length = 343
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 91/226 (40%), Gaps = 32/226 (14%)
Query: 232 VTSMESERAFGGKLNDTYFWLVDLDD---------YDIDINLQIRYNEAYVGLPVTQTSL 282
+ + ++ER GG L D F VDLDD D D + + EA L
Sbjct: 93 IDTQQAERTLGGVLTDRGF-AVDLDDPDHVLYAYLSDPDGDEEGGTGEACCALGWLAAES 151
Query: 283 HR----RNIVE---FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH 335
R R + F ++ P A +V +A PG LDPMCG G + +E L
Sbjct: 152 VRDFGGRQPTDRPFFQPGSMDPLEARALVNIAGAGPGATILDPMCGTGGLLLEAGLV--G 209
Query: 336 TFFVCGDINEKLVLKTQANV---LHNSGNLNRELKVSP-----LVCNVRQLCFKPACVDG 387
V GD EK+V T+ N+ L G+ R P + L VD
Sbjct: 210 ADVVGGDAQEKMVSGTRKNLAYALDGDGHPERASYPDPGEWGVFRSDASALPVADDTVDA 269
Query: 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433
+V D P+G++ + + L L E ++ GR +L+ +DR
Sbjct: 270 VVFDAPYGRQSRIEGDLAPLVSGALGEAARVA----GRCVLV-ADR 310
>gi|124027227|ref|YP_001012547.1| DNA modification methylase [Hyperthermus butylicus DSM 5456]
gi|123977921|gb|ABM80202.1| predicted DNA modification methylase [Hyperthermus butylicus DSM
5456]
Length = 354
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC-SLSYPHTFFVCGDINEKLV 348
F+ +L P +A + L+ P +LDP CG G P+E +L P +CG++ +KL
Sbjct: 177 FHPGSLDPRLARLFLNLSRAAPPGPYLDPFCGTGGFPLEAQTLGIP---AICGELADKLA 233
Query: 349 LKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNF-LL 407
+ N+ G+ + ++ + QL + + I TD P+G+ V ++ L
Sbjct: 234 NGAKTNLQAYPGS---QYIITIAQWDATQLPLRDNSIQSIGTDPPYGRSVSTRGKKLETL 290
Query: 408 YRLFLIEIGKIVRP 421
FL E ++++P
Sbjct: 291 LEQFLHEAARVLKP 304
>gi|428781311|ref|YP_007173097.1| N6-adenine-specific DNA methylase [Dactylococcopsis salina PCC
8305]
gi|428695590|gb|AFZ51740.1| putative N6-adenine-specific DNA methylase [Dactylococcopsis salina
PCC 8305]
Length = 374
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 14/132 (10%)
Query: 209 NFTNPEENLLKFRVTCNRVGKHTVTSM--------ESERAFGGKLNDTYFWLVDLDDYDI 260
N+ +PE + N+ HT S + + F GK ++ V+L++ D+
Sbjct: 83 NYLSPESTFMVHCTGKNQQLNHTHFSALQVKNAIADQQTQFFGKRSN-----VNLENPDL 137
Query: 261 DINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPM 319
INL I + + L T SLHRR I LK T+A ++ + LDPM
Sbjct: 138 IINLHIEKTQGILSLDSTGESLHRRGYRPAMGIAPLKETLAAALLTMTDWETNLPLLDPM 197
Query: 320 CGGGTIPVECSL 331
CG GT P+E L
Sbjct: 198 CGSGTFPIEAGL 209
>gi|386820576|ref|ZP_10107792.1| putative N6-adenine-specific DNA methylase [Joostella marina DSM
19592]
gi|386425682|gb|EIJ39512.1| putative N6-adenine-specific DNA methylase [Joostella marina DSM
19592]
Length = 386
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VDL D+ IN+ I+ + V L + SLH+R NI + +A M+ L+
Sbjct: 133 VDLKYPDLRINIHIQKDFCNVSLDSSGQSLHQRGYKTATNIAPINEVLAAGMLLLSGWDG 192
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GTIPVE ++
Sbjct: 193 QSDFLDPMCGSGTIPVEAAM 212
>gi|354609687|ref|ZP_09027643.1| Conserved hypothetical protein CHP01177 [Halobacterium sp. DL1]
gi|353194507|gb|EHB60009.1| Conserved hypothetical protein CHP01177 [Halobacterium sp. DL1]
Length = 320
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 14/183 (7%)
Query: 228 GKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQT--SLHRR 285
G V + +ER GG L D F VDL+D D ++ + A++ T++ R
Sbjct: 90 GTAGVDTQRAERELGGVLVDRGF-SVDLEDPDHELRALYSRDSAHLSWLATESVRDYGDR 148
Query: 286 NIVE---FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGD 342
+ F ++ P +A + LA PGD LDPMCG G + +E L H D
Sbjct: 149 KPTDRPFFQPGSMDPLLARAVCNLARVDPGDRVLDPMCGTGGVLIEAGLLGAHPLGT--D 206
Query: 343 INEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKS 402
K+V + N+ G+ + V+ + L + V V D P+G++ +S
Sbjct: 207 AQSKMVRGARQNL----GHFLDDFDVAR--ADATSLPLRDDSVAAAVFDAPYGRQSKIES 260
Query: 403 NNF 405
++
Sbjct: 261 HDL 263
>gi|20094405|ref|NP_614252.1| N-6 adenine-specific DNA methylase [Methanopyrus kandleri AV19]
gi|19887482|gb|AAM02182.1| Predicted N6-adenine-specific RNA methylase containing THUMP domain
[Methanopyrus kandleri AV19]
Length = 352
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGG------KLNDTYFWLVDLDDYDIDINLQIRYNEAYV 273
F V +R+G+H TS++ A G K + + VDLD + + + + V
Sbjct: 105 FGVRPSRLGEHDFTSVDVGAAVGDAVIERIKREEGFRPQVDLDAPSVIVRADVVGDTVIV 164
Query: 274 GLPVT-QTSLHRRNIVEFN-ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
G+ T SLH+R ++ L P IA M+ LA D +DP CGG T+P+E L
Sbjct: 165 GVCTTGDRSLHQRGYRVYDHPAALNPVIAQGMLELAGDP--DSLIDPTCGGATVPIEALL 222
Query: 332 SYPHT 336
P T
Sbjct: 223 RDPET 227
>gi|104774014|ref|YP_618994.1| DNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
gi|103423095|emb|CAI97818.1| Putative DNA methylase [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
Length = 374
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 41/198 (20%)
Query: 258 YDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPG-DVF 315
Y +D+N I + + L T +SL +R +E LK A ++++L +P G F
Sbjct: 138 YQLDVN--IYKDTVRLSLDTTGSSLFKRGYRIEHGGAPLKENFAASLIKL-TPYDGTHPF 194
Query: 316 LDPMCGGGTIPVECSL-----------SYPHTFFVCGD--INEKLVLKTQANVLHNSGNL 362
+DPMCG GT+P+E +L + +F D ++E+L+ + ++ V +
Sbjct: 195 IDPMCGSGTLPIEAALIARNIAPGTWRKFAFDYFDWFDPSLHEELLEEAKSQVKPAEAPI 254
Query: 363 NRE------LKVSPLVCN----VRQLCFKPACVDGIVTDL---------PFGKRVGSKSN 403
L+V+ L + ++ + FK V TDL P+GKR+ K
Sbjct: 255 WASDIDQSILEVAKLNAHNAGVLQDIRFKQVAVKDFTTDLENGVIVSNPPYGKRLKDKQG 314
Query: 404 NFLLYRLFLIEIGKIVRP 421
LYR ++G+++RP
Sbjct: 315 AEELYR----QMGEVLRP 328
>gi|418035569|ref|ZP_12674025.1| hypothetical protein LDBUL1519_00725 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|354690099|gb|EHE90054.1| hypothetical protein LDBUL1519_00725 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 374
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 41/198 (20%)
Query: 258 YDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPG-DVF 315
Y +D+N I + + L T +SL +R +E LK A ++++L +P G F
Sbjct: 138 YQLDVN--IYKDTVRLSLDTTGSSLFKRGYRIEHGGAPLKENFAASLIKL-TPYDGTHPF 194
Query: 316 LDPMCGGGTIPVECSL-----------SYPHTFFVCGD--INEKLVLKTQANVLHNSGNL 362
+DPMCG GT+P+E +L + +F D ++E+L+ + ++ V +
Sbjct: 195 IDPMCGSGTLPIEAALIARNIAPGTWRKFAFDYFDWFDPSLHEELLEEAKSQVKPAEAPI 254
Query: 363 NRE------LKVSPLVCN----VRQLCFKPACVDGIVTDL---------PFGKRVGSKSN 403
L+V+ L + ++ + FK V TDL P+GKR+ K
Sbjct: 255 WASDIDQSILEVAKLNAHNAGLLQDIRFKQVAVKDFTTDLENGVIVSNPPYGKRLKDKQG 314
Query: 404 NFLLYRLFLIEIGKIVRP 421
LYR ++G+++RP
Sbjct: 315 AEELYR----QMGEVLRP 328
>gi|347524329|ref|YP_004781899.1| RNA methylase [Pyrolobus fumarii 1A]
gi|343461211|gb|AEM39647.1| RNA methylase [Pyrolobus fumarii 1A]
Length = 345
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
+ L P +A V LA G +LDP CG G +E LS +CGDI+ +
Sbjct: 170 YKPGALDPRMARLFVNLARVARGSRYLDPFCGTGGFAIEALLSAGAREAICGDIDRDMAA 229
Query: 350 KTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK---RVGSKSNNFL 406
+ N+ +G L V+ + R+L + VD I TD P+G+ G K+ +
Sbjct: 230 GSAVNLSRYTGG---RLWVTAR-WDARRLPLRDESVDSIGTDTPYGRLTTTAGMKTE--V 283
Query: 407 LYRLFLIEIGKIVR 420
+ FL E +++R
Sbjct: 284 IVAGFLREAARVLR 297
>gi|156937412|ref|YP_001435208.1| RNA methylase [Ignicoccus hospitalis KIN4/I]
gi|156566396|gb|ABU81801.1| putative RNA methylase [Ignicoccus hospitalis KIN4/I]
Length = 306
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 16/113 (14%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC----SLSYPHTFFVCGDINE 345
F+ ++ P +A MV L+ PG+ FLDP CG G I E +LS+ C D++
Sbjct: 134 FSPGSMDPLLARAMVNLSRVRPGERFLDPFCGTGVIAQEAWRVGALSF------CADLDP 187
Query: 346 KLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRV 398
+V ++ N H L+ S Q+ F+ + I TD P+G+ V
Sbjct: 188 SMVYGSRINAQHVGAEAEHVLQDSA------QMPFRRSSFSAIATDPPYGRSV 234
>gi|120436241|ref|YP_861927.1| hypothetical protein GFO_1890 [Gramella forsetii KT0803]
gi|117578391|emb|CAL66860.1| protein belonging to UPF0020-possibly an RNA methylase [Gramella
forsetii KT0803]
Length = 386
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VDLD D+ IN+ I N V + SLH+R NI + +A M+ ++
Sbjct: 132 VDLDFPDLRINIHIENNFCNVSFDSSGDSLHKRGYRTATNIAPINEVLAAGMLLMSGWDG 191
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GTIP+E ++
Sbjct: 192 QCDFLDPMCGSGTIPIEAAM 211
>gi|254168323|ref|ZP_04875169.1| Putative RNA methylase family UPF0020 [Aciduliprofundum boonei
T469]
gi|197622832|gb|EDY35401.1| Putative RNA methylase family UPF0020 [Aciduliprofundum boonei
T469]
Length = 356
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 90/221 (40%), Gaps = 33/221 (14%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGK-LNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVT 278
F V R G+H TSM+ G + L V+LD+ ++ + + T
Sbjct: 86 FAVRTKRSGEHNFTSMDVNAVVGEEILKKCPEAKVNLDNPNLTFLCWVDNENFIFTIDTT 145
Query: 279 QTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY---P 334
SLHRR + + + P +A M++ A G+ +DP CG GTIP+E +Y P
Sbjct: 146 GESLHRRGYRIYQHPAPINPVLASLMLKFAG-WNGEKMVDPFCGSGTIPIEAHHNYNRVP 204
Query: 335 HTF-------------FVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381
+ F + DI E++ + + L + V+ N + +
Sbjct: 205 NKFRTFNFPKLPFFDEALWNDIKEEMDKRERNKRLELYCFEKFKKHVNGCKLNAKNAGAR 264
Query: 382 PACVDG--------------IVTDLPFGKRVGSKSNNFLLY 408
+C+ G I+T+ PFG R+GSK F LY
Sbjct: 265 FSCLQGDAEKMHKFVDYAPFIITNPPFGLRIGSKKKIFKLY 305
>gi|448543939|ref|ZP_21625400.1| RNA methylase [Haloferax sp. ATCC BAA-646]
gi|448551099|ref|ZP_21629241.1| RNA methylase [Haloferax sp. ATCC BAA-645]
gi|448558526|ref|ZP_21633083.1| RNA methylase [Haloferax sp. ATCC BAA-644]
gi|445706081|gb|ELZ57968.1| RNA methylase [Haloferax sp. ATCC BAA-646]
gi|445710655|gb|ELZ62453.1| RNA methylase [Haloferax sp. ATCC BAA-645]
gi|445712278|gb|ELZ64060.1| RNA methylase [Haloferax sp. ATCC BAA-644]
Length = 318
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 24/179 (13%)
Query: 228 GKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
G +++ ++ER G L F VDLDD D ++ + VG + R+
Sbjct: 87 GLTGISTTDAERELGSALVGRGFG-VDLDDPDHELRVYFSEGACLVGWTAVEAV---RDF 142
Query: 288 VE--------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFV 339
+ F ++ P A V +A PG LDPMCG G + +E L V
Sbjct: 143 TDRKPTDRPFFQPGSMAPVDARAFVNMAGAEPGARILDPMCGTGGVLLEAGLVGADVVGV 202
Query: 340 CGDINEKLVLKTQANVLH--NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK 396
D K+V + N+ H SG++ R + L + +DG V D P+G+
Sbjct: 203 --DAQAKMVGGARENLRHYVGSGDVIR--------GDATALPLRDDSMDGAVFDAPYGR 251
>gi|304314880|ref|YP_003850027.1| DNA modification methylase [Methanothermobacter marburgensis str.
Marburg]
gi|302588339|gb|ADL58714.1| predicted DNA modification methylase [Methanothermobacter
marburgensis str. Marburg]
Length = 336
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 63/133 (47%), Gaps = 15/133 (11%)
Query: 283 HRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGD 342
HRR F ++ P +A MV LA GD LDP CG G I +E L + D
Sbjct: 161 HRRPF--FYPGSMSPKLARCMVNLAGVRSGDRLLDPFCGTGGILIEAGLM--DVRVMGAD 216
Query: 343 INEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFG---KRVG 399
I+ ++V T+ N+ H G + E+ + + R L + VD IVTD P+G G
Sbjct: 217 IDWRMVEGTRKNLQHY-GITDFEV----IRSDARDLRLE-GGVDAIVTDPPYGISASTAG 270
Query: 400 SKSNNFLLYRLFL 412
+S LYR FL
Sbjct: 271 ERSEK--LYREFL 281
>gi|16417154|gb|AAL18604.1|AF380577_1 SAM-dependent methyltransferase [Homo sapiens]
gi|16417156|gb|AAL18605.1|AF380578_1 SAM-dependent methyltransferase [Homo sapiens]
gi|16417158|gb|AAL18606.1|AF380579_1 SAM-dependent methyltransferase [Homo sapiens]
gi|16553750|dbj|BAB71581.1| unnamed protein product [Homo sapiens]
gi|16565964|gb|AAL26318.1| SAM-dependent methyltransferase [Homo sapiens]
Length = 244
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 13/126 (10%)
Query: 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371
G LDPMCG GTI +E + +P ++V D+++ +L T N L +G E K+ L
Sbjct: 40 GAFVLDPMCGLGTILLEAAKEWPDVYYVGADVSDSQLLGTWDN-LKAAG---LEDKIELL 95
Query: 372 VCNVRQLCFKPACVDGIVTDLPFGK--RVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429
+V +L VD I++D+PFGK ++G + L ++ +G G +LL
Sbjct: 96 KISVIELPLPSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVG-------GTIVLL 148
Query: 430 TSDRKH 435
S+ H
Sbjct: 149 LSEDHH 154
>gi|331701441|ref|YP_004398400.1| rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus buchneri NRRL
B-30929]
gi|329128784|gb|AEB73337.1| rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus buchneri NRRL
B-30929]
Length = 386
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 112/242 (46%), Gaps = 43/242 (17%)
Query: 230 HTVTSMES--ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPV--TQTSLHRR 285
H+V ++ ++A +L+ Y L + + L++ N+ +V L + T +SL +R
Sbjct: 103 HSVPDSQAIVKKAIVNELSTAYHRHTRLPETGAEFPLEVAINKDHVMLTMDTTGSSLFKR 162
Query: 286 NI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL---SYPHTF---F 338
+E LK +A +V L S P FLDP CG GTIP+E ++ + F F
Sbjct: 163 GYRIEKGSAPLKENMAAALVMLTSWYPDMPFLDPFCGSGTIPIEAAMIGRNIAPGFNRDF 222
Query: 339 VC-------GDINEKLVLKTQANVLHN----------SGNL----NRELKVSPLVCNV-- 375
+C D+ +K+ + + ++ GN+ R + + L+ ++
Sbjct: 223 ICEQWPWIDHDMAQKVRDEADSKADYDIELDISASDIDGNMIEISKRNAEEAGLLADIQF 282
Query: 376 RQLC---FKPACVDG-IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA-ILLT 430
+QL FK V+G IV + P+G+R+ + + LY+ ++GK+ P + LT
Sbjct: 283 KQLAVADFKTDKVNGVIVGNPPYGQRMSDEEHAHELYK----QMGKVFNPLTSWSKYFLT 338
Query: 431 SD 432
SD
Sbjct: 339 SD 340
>gi|445113284|ref|ZP_21377503.1| hypothetical protein HMPREF0662_00543 [Prevotella nigrescens F0103]
gi|444841191|gb|ELX68209.1| hypothetical protein HMPREF0662_00543 [Prevotella nigrescens F0103]
Length = 497
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
+ + + DI +N+ + ++A + L + SLHRR + N+ L +A M+ L
Sbjct: 132 ISVSNPDIRLNIHVAEDKATLSLDSSGESLHRRGYRQENVEAPLNEVLAAGMILLTGWKG 191
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GT+P+E +L
Sbjct: 192 ETDFIDPMCGSGTLPIEAAL 211
>gi|340350711|ref|ZP_08673685.1| N6-adenine-specific DNA methylase [Prevotella nigrescens ATCC
33563]
gi|339607088|gb|EGQ12038.1| N6-adenine-specific DNA methylase [Prevotella nigrescens ATCC
33563]
Length = 497
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
+ + + DI +N+ + ++A + L + SLHRR + N+ L +A M+ L
Sbjct: 132 ISVSNPDIRLNIHVAEDKATLSLDSSGESLHRRGYRQENVEAPLNEVLAAGMILLTGWKG 191
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GT+P+E +L
Sbjct: 192 ETDFIDPMCGSGTLPIEAAL 211
>gi|430758397|ref|YP_007209249.1| hypothetical protein YpsC [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|430022917|gb|AGA23523.1| hypothetical protein YpsC [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 382
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 9/110 (8%)
Query: 224 CNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSL 282
C R+ K + +E + GK ND W+ + +Y ++I+L ++A + L + T L
Sbjct: 109 CQRIVKKAI--VEKLKLQSGKAND---WIEETGAEYKVEISL--LKDQALITLDSSGTGL 161
Query: 283 HRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
H+R V+ +K T+A +V+L + P F+DP CG GTI +E +L
Sbjct: 162 HKRGYRVDQGGAPIKETLAAALVQLTNWTPDRPFVDPFCGSGTIAIEAAL 211
>gi|452915662|ref|ZP_21964288.1| hypothetical protein BS732_2729 [Bacillus subtilis MB73/2]
gi|452116010|gb|EME06406.1| hypothetical protein BS732_2729 [Bacillus subtilis MB73/2]
Length = 385
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 9/110 (8%)
Query: 224 CNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSL 282
C R+ K + +E + GK ND W+ + +Y ++I+L ++A + L + T L
Sbjct: 109 CQRIVKKAI--VEKLKLQSGKAND---WIEETGAEYKVEISL--LKDQALITLDSSGTGL 161
Query: 283 HRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
H+R V+ +K T+A +V+L + P F+DP CG GTI +E +L
Sbjct: 162 HKRGYRVDQGGAPIKETLAAALVQLTNWTPDRPFVDPFCGSGTIAIEAAL 211
>gi|418032624|ref|ZP_12671107.1| hypothetical protein BSSC8_20510 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351471487|gb|EHA31608.1| hypothetical protein BSSC8_20510 [Bacillus subtilis subsp. subtilis
str. SC-8]
Length = 374
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 9/110 (8%)
Query: 224 CNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSL 282
C R+ K + +E + GK ND W+ + +Y ++I+L ++A + L + T L
Sbjct: 98 CQRIVKKAI--VEKLKLQSGKAND---WIEETGAEYKVEISL--LKDQALITLDSSGTGL 150
Query: 283 HRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
H+R V+ +K T+A +V+L + P F+DP CG GTI +E +L
Sbjct: 151 HKRGYRVDQGGAPIKETLAAALVQLTNWTPDRPFVDPFCGSGTIAIEAAL 200
>gi|449094712|ref|YP_007427203.1| putative methylase with RNA interaction domain [Bacillus subtilis
XF-1]
gi|449028627|gb|AGE63866.1| putative methylase with RNA interaction domain [Bacillus subtilis
XF-1]
Length = 374
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 9/110 (8%)
Query: 224 CNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSL 282
C R+ K + +E + GK ND W+ + +Y ++I+L ++A + L + T L
Sbjct: 98 CQRIVKKAI--VEKLKLQSGKAND---WIEETGAEYKVEISL--LKDQALITLDSSGTGL 150
Query: 283 HRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
H+R V+ +K T+A +V+L + P F+DP CG GTI +E +L
Sbjct: 151 HKRGYRVDQGGAPIKETLAAALVQLTNWTPDRPFVDPFCGSGTIAIEAAL 200
>gi|448737751|ref|ZP_21719786.1| RNA methylase [Halococcus thailandensis JCM 13552]
gi|445803307|gb|EMA53605.1| RNA methylase [Halococcus thailandensis JCM 13552]
Length = 321
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 12/166 (7%)
Query: 237 SERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQT--SLHRRNIVE---FN 291
+ER GG L D + VDLDD D ++ + +G ++ R + F
Sbjct: 99 AERRLGGVLTDRGY-TVDLDDPDHELRALFADDSCILGWLAAESERGFGTRAPTKKPFFQ 157
Query: 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKT 351
++ P +A + +A PG+ +DPMCG G + VE L V D K+
Sbjct: 158 PGSMSPLLARALANIAGARPGETLVDPMCGTGGVLVEAGLVGARV--VGFDAQSKMARGA 215
Query: 352 QANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397
N+ H E + + + +L + D +V D P+G++
Sbjct: 216 ATNLDH----FLDEHEFATARADATRLPLRDDAADAVVFDAPYGRQ 257
>gi|16079275|ref|NP_390099.1| methylase with RNA interaction domain [Bacillus subtilis subsp.
subtilis str. 168]
gi|221310133|ref|ZP_03591980.1| hypothetical protein Bsubs1_12201 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314455|ref|ZP_03596260.1| hypothetical protein BsubsN3_12122 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319377|ref|ZP_03600671.1| hypothetical protein BsubsJ_12048 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323653|ref|ZP_03604947.1| hypothetical protein BsubsS_12177 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321311685|ref|YP_004203972.1| putative methylase with RNA interaction domain [Bacillus subtilis
BSn5]
gi|402776475|ref|YP_006630419.1| methylase with RNA interaction domain [Bacillus subtilis QB928]
gi|428279682|ref|YP_005561417.1| hypothetical protein BSNT_03301 [Bacillus subtilis subsp. natto
BEST195]
gi|1730958|sp|P50840.1|YPSC_BACSU RecName: Full=Putative RNA methyltransferase YpsC
gi|1146183|gb|AAB38473.1| putative [Bacillus subtilis subsp. subtilis str. 168]
gi|2634636|emb|CAB14134.1| putative methylase with RNA interaction domain [Bacillus subtilis
subsp. subtilis str. 168]
gi|291484639|dbj|BAI85714.1| hypothetical protein BSNT_03301 [Bacillus subtilis subsp. natto
BEST195]
gi|320017959|gb|ADV92945.1| putative methylase with RNA interaction domain [Bacillus subtilis
BSn5]
gi|402481656|gb|AFQ58165.1| Putative methylase with RNA interaction domain [Bacillus subtilis
QB928]
gi|407959460|dbj|BAM52700.1| methylase [Bacillus subtilis BEST7613]
gi|407965036|dbj|BAM58275.1| methylase [Bacillus subtilis BEST7003]
Length = 385
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 9/110 (8%)
Query: 224 CNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSL 282
C R+ K + +E + GK ND W+ + +Y ++I+L ++A + L + T L
Sbjct: 109 CQRIVKKAI--VEKLKLQSGKAND---WIEETGAEYKVEISL--LKDQALITLDSSGTGL 161
Query: 283 HRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
H+R V+ +K T+A +V+L + P F+DP CG GTI +E +L
Sbjct: 162 HKRGYRVDQGGAPIKETLAAALVQLTNWTPDRPFVDPFCGSGTIAIEAAL 211
>gi|336476043|ref|YP_004615184.1| putative RNA methylase [Methanosalsum zhilinae DSM 4017]
gi|335929424|gb|AEH59965.1| putative RNA methylase [Methanosalsum zhilinae DSM 4017]
Length = 344
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 16/155 (10%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F L P A ++ ++ +PG LDP CG G I VE ++ H + D K++
Sbjct: 176 FYPGVLMPRTARALINISGILPGKNILDPFCGTGGILVEAAMIKSHVIGM--DAQSKIIS 233
Query: 350 KTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR--VGSKSNNFLL 407
+ N+ + S L S + + ++ C+D IVTD P+G+ + ++S N L
Sbjct: 234 GARMNLDYYS------LDHSLMTGDATRIPLADECMDAIVTDPPYGRSALIHARSLNN-L 286
Query: 408 YRLFLIEIGKIVRPQIGRAILLTSDRK---HLIQA 439
Y + E+ +I+RP G ++ S+++ H I+A
Sbjct: 287 YSESMKEMYRILRP--GSLAVIVSEKQIDEHSIKA 319
>gi|384175824|ref|YP_005557209.1| hypothetical protein I33_2277 [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|349595048|gb|AEP91235.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
Length = 385
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 9/110 (8%)
Query: 224 CNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSL 282
C R+ K + +E + GK ND W+ + +Y ++I+L ++A + L + T L
Sbjct: 109 CQRIVKKAI--VEKLKLQSGKAND---WIEETGAEYKVEISL--LKDQALITLDSSGTGL 161
Query: 283 HRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
H+R V+ +K T+A +V+L + P F+DP CG GTI +E +L
Sbjct: 162 HKRGYRVDQGGAPIKETLAAALVQLTNWTPDRPFVDPFCGSGTIAIEAAL 211
>gi|254168345|ref|ZP_04875190.1| Putative RNA methylase family UPF0020 [Aciduliprofundum boonei
T469]
gi|289595829|ref|YP_003482525.1| RNA methylase [Aciduliprofundum boonei T469]
gi|197622626|gb|EDY35196.1| Putative RNA methylase family UPF0020 [Aciduliprofundum boonei
T469]
gi|289533616|gb|ADD07963.1| putative RNA methylase [Aciduliprofundum boonei T469]
Length = 356
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 89/228 (39%), Gaps = 33/228 (14%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGK-LNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVT 278
F V R G+H TSM+ G + L V+LD+ ++ + + T
Sbjct: 86 FAVRTKRRGEHDFTSMDVNAVVGEEILKKCPKAKVNLDNPNLTFLCWVDNENFIFTIDTT 145
Query: 279 QTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY---P 334
SLHRR + + + P +A M++ A G+ +DP CG GTIP+E +Y P
Sbjct: 146 GESLHRRGYRIYQHPAPINPVLASLMLKFAG-WNGEKMVDPFCGSGTIPIEAYHNYNRVP 204
Query: 335 HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC-------------NVRQLCFK 381
+ F + N + + + K L C N + +
Sbjct: 205 NKFRTFNFPKLPFFDEALWNGIKEEMDKSERNKRLELYCVEKFKKHVNGCKLNAKNAGAR 264
Query: 382 PACVDG--------------IVTDLPFGKRVGSKSNNFLLYRLFLIEI 415
+C+ G I+T+ PFG R+GSK F LY F E+
Sbjct: 265 FSCLQGDAENMHKFVDYAPFIITNPPFGLRIGSKKKIFKLYEEFAKEL 312
>gi|227529338|ref|ZP_03959387.1| site-specific DNA-methyltransferase [Lactobacillus vaginalis ATCC
49540]
gi|227350766|gb|EEJ41057.1| site-specific DNA-methyltransferase [Lactobacillus vaginalis ATCC
49540]
Length = 377
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 105/244 (43%), Gaps = 46/244 (18%)
Query: 230 HTVTSMES--ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQT--SLHRR 285
H V S+++ ++A +L+D Y L + L++ N+ +V L + T SL +R
Sbjct: 104 HNVPSVQAIVKKAIVRRLSDVYHRRTRLPEAGALYPLEVAINKDHVMLTLDTTGDSLFKR 163
Query: 286 NIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTF------- 337
+ LK +A +V LA P + F+DP+CG GTIP+E +L Y H
Sbjct: 164 GYRKAKGGAPLKENMAAALVMLAHWFPDNPFVDPVCGSGTIPIEAAL-YGHNIAPGINRS 222
Query: 338 FVC------------GDINEKLVLKTQANV---LHNSGNLNRELKVSPLVCNV------- 375
FVC D+ ++ K +V +H + ++ C
Sbjct: 223 FVCEQWTNLVPDGLADDVRDEADSKADYDVELDIHGYDIDQNMIDIAQENCRAAGLTHDI 282
Query: 376 --RQLCFKPACVDG----IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA-IL 428
+QL K D IV + P+G+R+ K LY+ ++GK+ RP + +
Sbjct: 283 TFKQLAVKDWHTDKINGVIVANPPYGERLSDKETVHELYQ----QMGKLYRPMTTWSKYI 338
Query: 429 LTSD 432
LT+D
Sbjct: 339 LTAD 342
>gi|350266389|ref|YP_004877696.1| hypothetical protein GYO_2443 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349599276|gb|AEP87064.1| YpsC [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 385
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 9/110 (8%)
Query: 224 CNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSL 282
C R+ K + +E + GK ND W+ + +Y ++I+L ++A + L + T L
Sbjct: 109 CQRIVKKAI--VEKLKLQSGKAND---WIEETGAEYKVEISL--LKDQAVITLDSSGTGL 161
Query: 283 HRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
H+R V+ +K T+A +V+L + P F+DP CG GTI +E +L
Sbjct: 162 HKRGYRVDQGGAPIKETLAAALVQLTNWTPDRPFVDPFCGSGTIAIEAAL 211
>gi|227513360|ref|ZP_03943409.1| site-specific DNA-methyltransferase [Lactobacillus buchneri ATCC
11577]
gi|227524503|ref|ZP_03954552.1| site-specific DNA-methyltransferase [Lactobacillus hilgardii ATCC
8290]
gi|227083233|gb|EEI18545.1| site-specific DNA-methyltransferase [Lactobacillus buchneri ATCC
11577]
gi|227088373|gb|EEI23685.1| site-specific DNA-methyltransferase [Lactobacillus hilgardii ATCC
8290]
Length = 386
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 41/207 (19%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
+ + I + A + L T +SL +R VE LK +A ++ L S P F+DPMC
Sbjct: 142 LEIAINKDHAMLTLDTTGSSLFKRGYRVEKGPAPLKENMAAALILLTSWYPDMPFIDPMC 201
Query: 321 GGGTIPVECSL---SYPHTF---FVCGD---INEKLVLKTQANVLHNSGNLNRELKVSP- 370
G GTIP+E +L + F F+C + I+ +V + + + + +REL +S
Sbjct: 202 GSGTIPIEAALIGRNIAPGFNRDFICENWPWIDADMVQNVR-DEADSKADYDRELDISAS 260
Query: 371 ------------------LVCNV--RQLC---FKPACVDGI-VTDLPFGKRVGSKSNNFL 406
L+ ++ +QL FK V+G+ + + P+G+R+ K
Sbjct: 261 DIDGNMVEISKRNAEEVGLLDDIHFKQLAVADFKTDKVNGVMIANPPYGERMSEKDQVHD 320
Query: 407 LYRLFLIEIGKIVRPQIGRA-ILLTSD 432
LY+ ++GK +P + LTSD
Sbjct: 321 LYK----QMGKAFKPLSSWSKYFLTSD 343
>gi|14521186|ref|NP_126661.1| hypothetical protein PAB1719 [Pyrococcus abyssi GE5]
gi|5458404|emb|CAB49892.1| Methyltransferase, putative, DUF248 family [Pyrococcus abyssi GE5]
gi|380741756|tpe|CCE70390.1| TPA: DNA methylase [Pyrococcus abyssi GE5]
Length = 373
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 13/114 (11%)
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353
++ P +A MV L+ G+V LDP CG GTI +E +L + + DI+++ +L+ +
Sbjct: 181 SIPPRLARIMVNLSEIRRGNV-LDPFCGTGTIIMELTLQGLNAY--GSDISQERILEAKQ 237
Query: 354 NVLHNSGNLNRELKV----SPLVCNVRQL--CFKPACVDGIVTDLPFGKRVGSK 401
NV L RE KV S VC+VR+L CF + I+T+ GK + SK
Sbjct: 238 NVEW----LRREFKVEKYPSLRVCDVRKLRKCFPRTRFNAIITEPYMGKALKSK 287
>gi|117924997|ref|YP_865614.1| 23S rRNA m(2)G2445 methyltransferase [Magnetococcus marinus MC-1]
gi|229560190|sp|A0L8B5.1|RLMKL_MAGSM RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|117608753|gb|ABK44208.1| 23S rRNA m(2)G-2445 methyltransferase [Magnetococcus marinus MC-1]
Length = 722
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 22/95 (23%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMV---------RLAS 308
D+ INL IR NE VG+ ++ LHRR + LK +A ++ RL +
Sbjct: 136 DLRINLGIRGNEGRVGIDLSGEGLHRRGYRLRTGDAPLKENLAAALLYFAGWEEQARLGA 195
Query: 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDI 343
P F+DPMCG GT+P+E ++ + GDI
Sbjct: 196 P-----FVDPMCGSGTLPIEAAM-------MAGDI 218
>gi|312136740|ref|YP_004004077.1| RNA methylase [Methanothermus fervidus DSM 2088]
gi|311224459|gb|ADP77315.1| putative RNA methylase [Methanothermus fervidus DSM 2088]
Length = 343
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 31/248 (12%)
Query: 188 QNQELKEIDINSMCSSQNQK-----TNFTNPEENLLK----------FRVTCNRVGKHTV 232
++++ EI +N + + TN N ++ +LK F V R+ +
Sbjct: 44 SDEDVGEILVNRLAYAHEVSKLLFMTNIENLKDKILKVDWDSILGQTFAVRVKRINSE-I 102
Query: 233 TSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE--- 289
+S E E GG ++ V+L++ + + + ++ + G+ + + + NI +
Sbjct: 103 SSREMEVKIGGIIDRLSSSKVNLENPESFVRVVFNDSKVFFGIRIGKINKKHFNIAKPHK 162
Query: 290 ---FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEK 346
F+ ++L P IA MV LA G+ LDP CG G + +E + + DI++K
Sbjct: 163 RPFFHPSSLDPKIARCMVNLARVKKGEKILDPFCGAGGVLIEAGMIGIKV--IGCDIDKK 220
Query: 347 LVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFL 406
+V N+ + ++ KV + R++ K VD IVTD P+G +K
Sbjct: 221 MVKGAIENLKYFG---IKDFKV--FQEDARKIKLKEK-VDAIVTDPPYGISTSTKGEELS 274
Query: 407 -LYRLFLI 413
LY FL+
Sbjct: 275 KLYYEFLL 282
>gi|359415737|ref|ZP_09208144.1| putative RNA methylase [Candidatus Haloredivivus sp. G17]
gi|358033887|gb|EHK02385.1| putative RNA methylase [Candidatus Haloredivivus sp. G17]
Length = 299
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 19/109 (17%)
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCG------DINEKL 347
++ P +A +V L+ G+ LDP CG G + +E L CG DI EK+
Sbjct: 150 SMDPILARVLVNLSEVSAGESVLDPFCGTGGVLIEAGL--------CGTVPKGLDIQEKM 201
Query: 348 VLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK 396
V TQ N L N G LN ++K ++ ++ D I+TDLP+GK
Sbjct: 202 VSGTQKN-LENYGILNHDIKQG----DISEVDDIFDGYDVIITDLPYGK 245
>gi|443634830|ref|ZP_21119002.1| hypothetical protein BSI_40810 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443345255|gb|ELS59320.1| hypothetical protein BSI_40810 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 385
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 9/110 (8%)
Query: 224 CNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSL 282
C R+ K + +E + GK ND W+ + +Y ++I+L ++A + L + T L
Sbjct: 109 CQRIVKKAI--VEKLKLQSGKAND---WIEETGAEYKVEISL--LKDQAIITLDSSGTGL 161
Query: 283 HRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
H+R V+ +K T+A +V+L + P F+DP CG GTI +E +L
Sbjct: 162 HKRGYRVDQGGAPIKETLAAALVQLTNWTPDRPFVDPFCGSGTIAIEAAL 211
>gi|170291070|ref|YP_001737886.1| putative RNA methylase [Candidatus Korarchaeum cryptofilum OPF8]
gi|170175150|gb|ACB08203.1| putative RNA methylase [Candidatus Korarchaeum cryptofilum OPF8]
Length = 307
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 88/194 (45%), Gaps = 30/194 (15%)
Query: 219 KFRVTCNRV-------GKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEA 271
+F+ TC RV G+ + ER G +++ VDL++ +I+I I +
Sbjct: 56 RFKATCVRVEGSCEWIGRKDL----EERIGGWVIDNNEGAKVDLENPEIEIIAVITSDHV 111
Query: 272 YVGLPVTQTSLHRRNIVEFNI------TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTI 325
V L + + E + +++PT+A MV LA GD+ LDP G G I
Sbjct: 112 VVYLKEGEVDRSLFKVKEVSARPYAHPASMRPTLARAMVNLARTRGGDLVLDPFLGVGGI 171
Query: 326 PVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS---PLVCNVRQLCFKP 382
+E LS + DINEKLV++ + N++ EL+V L VR
Sbjct: 172 ALEI-LSV-GARLIGVDINEKLVIQAKNNLMTYGFLEGYELRVGDALSLELGVR------ 223
Query: 383 ACVDGIVTDLPFGK 396
VD IVTD P+G+
Sbjct: 224 --VDRIVTDPPYGR 235
>gi|448441658|ref|ZP_21589265.1| RNA methylase [Halorubrum saccharovorum DSM 1137]
gi|445688694|gb|ELZ40945.1| RNA methylase [Halorubrum saccharovorum DSM 1137]
Length = 363
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 7/112 (6%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F ++ P A LA PG LDPMCG G +P+E + C D K+V
Sbjct: 186 FQPGSMAPVDARAYANLAGAAPGRAILDPMCGTGGLPLEAGI-VGSDVIAC-DAQAKMVR 243
Query: 350 KTQANVLHNSGNLNRELKVSPLVCNVRQ-----LCFKPACVDGIVTDLPFGK 396
T+ N+ G + + S +V + L + VDG+ D P+G+
Sbjct: 244 GTRENLREYVGGAESDAERSAPDWHVARGDATALPLRDDAVDGVAFDAPYGR 295
>gi|448475875|ref|ZP_21603230.1| RNA methylase [Halorubrum aidingense JCM 13560]
gi|445816093|gb|EMA66002.1| RNA methylase [Halorubrum aidingense JCM 13560]
Length = 364
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 69/186 (37%), Gaps = 24/186 (12%)
Query: 232 VTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNE-----AYVGLPVTQTSLHRRN 286
V++ +ER GG L D F VDLDD D + E A G + S+
Sbjct: 103 VSTSAAERELGGVLVDRGF-DVDLDDPDHVLRALFAAGERTAHDAVDGADGGEASVCTLG 161
Query: 287 IVE----------------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECS 330
V F ++ P A V LA PG LDPMCG G +P+E
Sbjct: 162 WVAAEGARDFAPKPTDRPFFQPGSMAPADARAYVNLAGAAPGRTLLDPMCGTGGLPLEAG 221
Query: 331 LSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390
L C D K+V T+ N+ L + L F+ DG+
Sbjct: 222 LVGADA-IAC-DAQRKMVRGTRENLREYVDATADAPDWHVLRGDATALPFRDDAADGVAF 279
Query: 391 DLPFGK 396
D P+G+
Sbjct: 280 DAPYGR 285
>gi|268324726|emb|CBH38314.1| conserved hypothetical protein, UPF0020 family and THUMP domain
family [uncultured archaeon]
Length = 343
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 14/146 (9%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F+ + P +A +V L+ ++FLDP CG G + +E + + D+ E++V
Sbjct: 171 FSPGVILPKVARALVNLSGIKENELFLDPFCGTGGLLIEAGMIGARVLGI--DVQEQMVR 228
Query: 350 KTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFL--L 407
T N+ N L L +V + + + C+D I TD+P+G+ + F L
Sbjct: 229 GTAENL--NFYGLTGAL----IVGDAAKTALRDNCIDAIATDMPYGRSSLIARSGFAPSL 282
Query: 408 YRLF---LIEIGKIVRPQIGRAILLT 430
RLF L +I ++++P G+A++++
Sbjct: 283 ERLFPDALAQIHRLLKPG-GKAVIVS 307
>gi|432331044|ref|YP_007249187.1| putative DNA modification methylase [Methanoregula formicicum SMSP]
gi|432137753|gb|AGB02680.1| putative DNA modification methylase [Methanoregula formicicum SMSP]
Length = 322
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 15/156 (9%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F+ + P +A +V +A G+ LDP CG G I +E L H + D + ++
Sbjct: 158 FHPGVMMPRMARTLVNIARTRAGETLLDPFCGTGGILIEAELLGMHA--IGSDFDPFMIG 215
Query: 350 KTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFL--L 407
++ N + +L + C L F +D IVTD P+G+ V + + L
Sbjct: 216 GSRLNA------KDSDLLTADATC----LPFPDHSIDSIVTDFPYGQSVCILKADTMDRL 265
Query: 408 YRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHIT 443
Y L EI +++RP RA+++T I A H+T
Sbjct: 266 YSDALSEICRVLRPG-RRAVVVTHRDISAIAAQHMT 300
>gi|448679968|ref|ZP_21690407.1| RNA methylase [Haloarcula argentinensis DSM 12282]
gi|445769616|gb|EMA20689.1| RNA methylase [Haloarcula argentinensis DSM 12282]
Length = 361
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 97/254 (38%), Gaps = 49/254 (19%)
Query: 232 VTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTS---------- 281
+ + ++ER GG L + F VDLDD D Q+ Y AY P
Sbjct: 111 IDTQQAERTLGGVLTERGF-AVDLDDPD-----QVLY--AYFSDPAGDEEGGTGEACCAL 162
Query: 282 --LHRRNIVEFNI-----------TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVE 328
L ++ +F ++ P A +V +A P LDPMCG G + +E
Sbjct: 163 GWLDAESVRDFGSRQPTDRPFFQPGSMDPLEARALVNIAGAGPDATILDPMCGTGGLLLE 222
Query: 329 CSLSYPHTFFVCGDINEKLVLKTQANV---LHNSGNLNRELKVSP-----LVCNVRQLCF 380
L V GD EK+V T+ N+ L G+ NR+ P + L
Sbjct: 223 AGLV--GADVVGGDAQEKMVSGTRENLGYALDGDGHPNRDAYPEPGEWGVFRSDASTLPI 280
Query: 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQAL 440
VD +V D P+G++ + L L E ++ GR +L+ +DR A
Sbjct: 281 ADNAVDAVVFDAPYGRQSRIEGELAPLVSDALGEAARVA----GRCVLV-ADRDWREAA- 334
Query: 441 HITSALWKCRKQIK 454
T A W K
Sbjct: 335 --TGAGWAVTDYFK 346
>gi|227510351|ref|ZP_03940400.1| site-specific DNA-methyltransferase [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227190003|gb|EEI70070.1| site-specific DNA-methyltransferase [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 386
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 41/207 (19%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
+ + I + A + L T +SL +R VE LK +A ++ L S P F+DPMC
Sbjct: 142 LEIAINKDRAMLTLDTTGSSLFKRGYRVEKGPAPLKENMAAALILLTSWYPDMPFIDPMC 201
Query: 321 GGGTIPVECSL---SYPHTF---FVCGD---INEKLVLKTQANVLHNSGNLNRELKVSP- 370
G GTIP+E +L + F F+C I+ +V + + + + +REL +S
Sbjct: 202 GSGTIPIEAALIGRNIAPGFNRDFICEKWPWIDADMVQNVR-DEADSKADYDRELDISAS 260
Query: 371 ------------------LVCNV--RQLC---FKPACVDGI-VTDLPFGKRVGSKSNNFL 406
L+ ++ +QL FK V+G+ + + P+G+R+ K
Sbjct: 261 DIDGNMVEISKRNAEEVGLLDDIHFKQLAVADFKTDKVNGVMIANPPYGERMSEKDQVHD 320
Query: 407 LYRLFLIEIGKIVRPQIGRA-ILLTSD 432
LY+ ++GK +P + LTSD
Sbjct: 321 LYK----QMGKAFKPLSSWSKYFLTSD 343
>gi|448727074|ref|ZP_21709451.1| RNA methylase [Halococcus morrhuae DSM 1307]
gi|445792274|gb|EMA42885.1| RNA methylase [Halococcus morrhuae DSM 1307]
Length = 321
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 12/166 (7%)
Query: 237 SERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-----FN 291
+ER GG L D + VDLDD D ++ + + +G ++ V F
Sbjct: 99 AERRLGGVLTDRGY-TVDLDDPDHELRALLADDSCILGWLAAESERGFGARVPTKKPFFQ 157
Query: 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKT 351
++ P +A + +A PG +DPMCG G + VE L D K+V
Sbjct: 158 PGSMSPLLARALANIAGAHPGATIVDPMCGTGGVLVEAGLVGARVLGF--DAQSKMVRGA 215
Query: 352 QANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397
N+ H L+ E + + + +L + D ++ D P+G++
Sbjct: 216 ATNLDH---YLD-EHEFATARADATRLPLRDDAADAVIFDAPYGRQ 257
>gi|452208186|ref|YP_007488308.1| tRNA (guanine(10),N(2))-dimethyltransferase [Natronomonas
moolapensis 8.8.11]
gi|452084286|emb|CCQ37625.1| tRNA (guanine(10),N(2))-dimethyltransferase [Natronomonas
moolapensis 8.8.11]
Length = 318
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 68/176 (38%), Gaps = 18/176 (10%)
Query: 228 GKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
G + + ER G +L D F D+D D L ++ L +T R
Sbjct: 88 GLAGIDTQAVERRLGSRLVDRGF---DVDLETPDHTLLALFSSGLAALGWLETEPEREFA 144
Query: 288 VE-------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVC 340
F ++ P A + +A PG LDPMCG G I VE L+ V
Sbjct: 145 ARKPTKKPFFQPGSMAPMDARALANIAGAAPGARILDPMCGTGGILVEAGLAGASVVGV- 203
Query: 341 GDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK 396
D K+V T+ N+ G + S L + +L VDG V D P+G+
Sbjct: 204 -DAQAKMVRGTERNLAAYLG------EGSVLRGDATRLPLADDSVDGAVLDAPYGR 252
>gi|15678751|ref|NP_275867.1| methyltransferase-like protein [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3183225|sp|O26820.1|TMG10_METTH RecName: Full=tRNA (guanine(10)-N2)-dimethyltransferase; AltName:
Full=tRNA:G10 dimethyltransferase
gi|2621813|gb|AAB85229.1| methyltransferase related protein [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 336
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 63/137 (45%), Gaps = 15/137 (10%)
Query: 279 QTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFF 338
Q H+R F ++ P +A MV L+ GD LDP CG G I +E L
Sbjct: 157 QARPHKRPF--FYPGSMSPKLARCMVNLSGVKAGDRILDPFCGTGGILIEAGLM--GVRV 212
Query: 339 VCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFG--- 395
V DI+ ++V T+ N+ H G + E+ + + R L VD IVTD P+G
Sbjct: 213 VGADIDWRMVEGTRENLQHY-GITDFEV----IRSDARDLRLDEK-VDAIVTDPPYGISA 266
Query: 396 KRVGSKSNNFLLYRLFL 412
G KS LYR FL
Sbjct: 267 STAGEKSEK--LYREFL 281
>gi|386758794|ref|YP_006232010.1| hypothetical protein MY9_2221 [Bacillus sp. JS]
gi|384932076|gb|AFI28754.1| hypothetical protein MY9_2221 [Bacillus sp. JS]
Length = 385
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 224 CNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSL 282
C R+ K + +E + GK ND W+ + +Y ++I+L ++A + L + T L
Sbjct: 109 CQRIVKKAI--VEKLKLQSGKAND---WIEETGAEYKVEISL--LKDQALITLDSSGTGL 161
Query: 283 HRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
H+R V+ +K T+A +V+L + P F DP CG GTI +E +L
Sbjct: 162 HKRGYRVDQGGAPIKETLAAALVQLTNWTPDRPFADPFCGSGTIAIEAAL 211
>gi|116514031|ref|YP_812937.1| N6-adenine-specific DNA methylase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|385815684|ref|YP_005852075.1| hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|418029425|ref|ZP_12667965.1| hypothetical protein LDBUL1632_00759 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|116093346|gb|ABJ58499.1| Predicted N6-adenine-specific DNA methylase [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|325125721|gb|ADY85051.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|354689931|gb|EHE89897.1| hypothetical protein LDBUL1632_00759 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 374
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 41/198 (20%)
Query: 258 YDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPG-DVF 315
Y +D++ I + + L T +SL +R +E LK A ++++L +P G F
Sbjct: 138 YQLDVH--IYKDTVRLSLDTTGSSLFKRGYRIEHGGAPLKENFAASLIKL-TPYDGTHPF 194
Query: 316 LDPMCGGGTIPVECSL-----------SYPHTFFVCGD--INEKLVLKTQANVLHNSGNL 362
+DPMCG GT+P+E +L + +F D ++E+L+ + ++ V +
Sbjct: 195 IDPMCGSGTLPIEAALIARNIAPGTWRKFAFDYFDWFDPSLHEELLEEAKSQVKPAEAPI 254
Query: 363 NRE------LKVSPLVCN----VRQLCFKPACVDGIVTDL---------PFGKRVGSKSN 403
L+V+ L + ++ + FK V TDL P+GKR+ K
Sbjct: 255 WASDIDQSILEVAKLNAHNAGVLQDIRFKQVAVKDFTTDLENGVIVSNPPYGKRLKDKQG 314
Query: 404 NFLLYRLFLIEIGKIVRP 421
LYR ++G+++RP
Sbjct: 315 AEELYR----QMGEVLRP 328
>gi|327313495|ref|YP_004328932.1| THUMP domain-containing protein [Prevotella denticola F0289]
gi|326945290|gb|AEA21175.1| THUMP domain protein [Prevotella denticola F0289]
Length = 504
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
+ + + DI +N+ + ++A + L + SLHRR + ++ L +A M+ +
Sbjct: 132 ISVSNPDIRLNIHVAEDDATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMILMTGWTG 191
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GT+PVE +L
Sbjct: 192 ETDFIDPMCGSGTLPVEAAL 211
>gi|389775506|ref|ZP_10193447.1| 23S rRNA m(2)G2445 methyltransferase [Rhodanobacter spathiphylli
B39]
gi|388437322|gb|EIL94128.1| 23S rRNA m(2)G2445 methyltransferase [Rhodanobacter spathiphylli
B39]
Length = 733
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIV-EFNITTLKPTIAYNM-VRLASP- 309
+D D+ DI INL++R + A V L + + LHRR E LK +A M +R P
Sbjct: 135 IDTDEPDIRINLRLRRDRATVSLDLAGSPLHRRGWREEQGEAPLKENLAAAMLLRGRWPE 194
Query: 310 --IPGDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E +L
Sbjct: 195 VYAAGGALLDPMCGSGTLLIEGAL 218
>gi|389805779|ref|ZP_10202926.1| 23S rRNA m(2)G2445 methyltransferase [Rhodanobacter thiooxydans
LCS2]
gi|388447020|gb|EIM03034.1| 23S rRNA m(2)G2445 methyltransferase [Rhodanobacter thiooxydans
LCS2]
Length = 728
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIV-EFNITTLKPTIAYNM-VRLASP- 309
++ D+ DI INL++R + A V L + T LHRR E LK +A M +R P
Sbjct: 130 INTDEPDIRINLRLRRDRATVSLDLAGTPLHRRGWREEQGEAPLKENLAAAMLLRAQWPA 189
Query: 310 --IPGDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E +L
Sbjct: 190 VYAAGGALLDPMCGSGTLLIEGAL 213
>gi|320352957|ref|YP_004194296.1| rRNA (guanine-N(2)-)-methyltransferase [Desulfobulbus propionicus
DSM 2032]
gi|320121459|gb|ADW17005.1| rRNA (guanine-N(2)-)-methyltransferase [Desulfobulbus propionicus
DSM 2032]
Length = 734
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 89/214 (41%), Gaps = 60/214 (28%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPI----PGD 313
DI +NL ++ A + L ++ SLHRR LK T+A +VRL+ +
Sbjct: 150 DIRLNLHVQGTGASLSLDLSGESLHRRGYRTGSGEAPLKETLAAAIVRLSGWLDRRQAEP 209
Query: 314 VFLDPMCGGGTIPVECSL----------------------------------------SY 333
+ LDPMCGGGT+ +E +L S
Sbjct: 210 ILLDPMCGGGTLLIEAALMLSDSAPGLLRKTFGFMAWNKHDPLLWERLVQEALDREGRSL 269
Query: 334 PHTF--FVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF--KPACVDGIV 389
P T+ F+ D + K+V + NV+ + L R++ +V RQL P ++
Sbjct: 270 PETWPQFIGYDADPKVVAAARKNVI--AAGL-RDV----IVIKQRQLARLQSPGPRGCLL 322
Query: 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQI 423
T+ P+G+R+ K LYR +G++ R Q
Sbjct: 323 TNPPYGERLSEKEAVKYLYRC----LGRVFRSQF 352
>gi|14601660|ref|NP_148201.1| methyltransferase [Aeropyrum pernix K1]
gi|5105526|dbj|BAA80839.1| putative methyltransferase [Aeropyrum pernix K1]
Length = 350
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 71/175 (40%), Gaps = 24/175 (13%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNIVE--------FNITTLKPTIAYNMVRLASPIPGD 313
+NL+I E + L VT + L R+ +E F L P ++ V L+ G
Sbjct: 140 LNLRIFATEGAMMLGVTLSRLEGRSFIERSPGRRPFFKPGPLSPRLSRAFVNLSRLQRGG 199
Query: 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV- 372
F DP CG G +E L + CGD++ +V G LN P +
Sbjct: 200 SFADPFCGTGGFAIEACL-LGASRIACGDLDWAMV---------RGGPLNLSRYCPPGIW 249
Query: 373 ----CNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFL-LYRLFLIEIGKIVRPQ 422
N +L VD I TD P+G+ + +L L R FL +++R +
Sbjct: 250 FYSAWNAAKLPLSSNSVDSIATDPPYGRSTTTGRMGYLSLTRAFLNTAVEVLRSE 304
>gi|448462783|ref|ZP_21597842.1| RNA methylase [Halorubrum kocurii JCM 14978]
gi|445818004|gb|EMA67872.1| RNA methylase [Halorubrum kocurii JCM 14978]
Length = 367
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 73/190 (38%), Gaps = 28/190 (14%)
Query: 232 VTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNE-----AYVGLPVTQTSLHRRN 286
V++ +ER GG L D F VDLDD D + E A G + S+
Sbjct: 113 VSTSAAERELGGVLVDRGF-DVDLDDPDHVLRALFTAGERDDHDAVPGADGGEASVCALG 171
Query: 287 IVE----------------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECS 330
V F ++ P A V LA PG LDPMCG G +P+E
Sbjct: 172 WVAVEAARDFAPKPTDRPFFQPGSMAPADARAYVNLAGAAPGRTLLDPMCGTGGLPLEAG 231
Query: 331 LSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP----LVCNVRQLCFKPACVD 386
L + V D K+V T+ N+ G + SP + L + VD
Sbjct: 232 LVGSNA--VACDAQAKMVRGTRENLRKYVGGGDGGDADSPDWHVARGDATALPLRDDAVD 289
Query: 387 GIVTDLPFGK 396
G+ D P+G+
Sbjct: 290 GVAFDAPYGR 299
>gi|300767377|ref|ZP_07077289.1| site-specific DNA-methyltransferase [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|300495196|gb|EFK30352.1| site-specific DNA-methyltransferase [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
Length = 400
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 230 HTVTSMES--ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYV--GLPVTQTSLHRR 285
H+V ++S ++A +L DTY L + L++ N+ +V L T +SL +R
Sbjct: 123 HSVPDVQSIVKKAIVNQLADTYHRSGHLPETGALFPLEVAINKDHVLLTLDTTGSSLFKR 182
Query: 286 NI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
VE LK +A +V LA P + F+DP+CG GTIP+E +L
Sbjct: 183 GYRVEKGGAPLKENMAAALVMLAKWYPDNPFVDPVCGSGTIPIEAAL 229
>gi|448560544|ref|ZP_21633992.1| RNA methylase [Haloferax prahovense DSM 18310]
gi|445722194|gb|ELZ73857.1| RNA methylase [Haloferax prahovense DSM 18310]
Length = 318
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 20/177 (11%)
Query: 228 GKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
G +++ ++ER G L D F VDLDD D + + + VG +T R+
Sbjct: 87 GLTGISTTDAERELGSALVDRGFG-VDLDDPDHVLRVYFSEDTCLVGWTTVETV---RDF 142
Query: 288 VE--------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFV 339
+ F ++ P A V +A P LDPMCG G + +E L V
Sbjct: 143 ADRKPTDRPFFQPGSMAPVDARAFVNMAGAEPDARILDPMCGTGGVLLEAGLVGADVVGV 202
Query: 340 CGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK 396
D K+V + N+ H G+ + + + L + +DG V D P+G+
Sbjct: 203 --DAQAKMVGGARENLRHYVGDGD------VVRGDATALPLRDDSMDGAVFDAPYGR 251
>gi|148266005|ref|YP_001232711.1| putative RNA methylase [Geobacter uraniireducens Rf4]
gi|146399505|gb|ABQ28138.1| putative RNA methylase [Geobacter uraniireducens Rf4]
Length = 375
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD D D+ +N+ + N V L + T L RR ++ N+ L+ T+A ++ L+
Sbjct: 131 VDTRDPDLRVNVHLFRNRCTVSLDTSGTPLDRRGYRLDRNVAPLRETLAAALLDLSGWDA 190
Query: 312 GDVFLDPMCGGGTIPVECSL 331
+DPMCG GTIP+E +L
Sbjct: 191 SVPLVDPMCGSGTIPIEAAL 210
>gi|284030814|ref|YP_003380745.1| putative RNA methylase [Kribbella flavida DSM 17836]
gi|283810107|gb|ADB31946.1| putative RNA methylase [Kribbella flavida DSM 17836]
Length = 342
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353
+L +A +V+ + P P DVFLDP G G I V ++ + + D+ + Q
Sbjct: 165 SLGADLATLLVKASEPAPDDVFLDPFAGSGAI-VSARMASAYRRLIYSDLAAG---EPQV 220
Query: 354 NVLHNSGNLNRELKVSPLVCNVRQLCFKP-ACVDGIVTDLPFGKRVGSKSNNFLLYRLFL 412
+L L R +V+ L + +L P V IVTD P+G+ + R +
Sbjct: 221 QILP---ELRRGKRVTLLTEDALELPSVPTGSVSAIVTDPPWGEYDELDVDLSTFARQMM 277
Query: 413 IEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKC 449
+++ P+ GR +LL S R +T+ LWK
Sbjct: 278 QSFDRVLDPERGRLVLLVSRR-----VADVTARLWKT 309
>gi|86142559|ref|ZP_01060998.1| putative N6-adenine-specific DNA methylase [Leeuwenhoekiella
blandensis MED217]
gi|85830591|gb|EAQ49049.1| putative N6-adenine-specific DNA methylase [Leeuwenhoekiella
blandensis MED217]
Length = 387
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VDL D+ I++ IR+N + L + SLH+R + NI + +A + LA
Sbjct: 133 VDLKFPDLSIDIHIRHNRCTISLDSSGVSLHQRGYRLSTNIAPINEVLAAGCLMLAGWKG 192
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GT+ +E ++
Sbjct: 193 YSDFLDPMCGSGTMLIEAAM 212
>gi|451946691|ref|YP_007467286.1| putative N6-adenine-specific DNA methylase [Desulfocapsa
sulfexigens DSM 10523]
gi|451906039|gb|AGF77633.1| putative N6-adenine-specific DNA methylase [Desulfocapsa
sulfexigens DSM 10523]
Length = 716
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Query: 260 IDINLQIRYNEAYVGLPVTQTSLHRRNIVE--FNITTLKPTIAYNMVRLASPIPG---DV 314
I I + I ++A + L ++ SLHRR + ++ LK ++A +V LA PG DV
Sbjct: 143 IRIRVSIYKDQATIALDLSGESLHRRGYRKEGGSLAPLKESLAAAIVALAGWKPGISKDV 202
Query: 315 -FLDPMCGGGTIPVECSLSY 333
FLDPMCG GTI +E +L +
Sbjct: 203 MFLDPMCGSGTILIEAALIF 222
>gi|281424112|ref|ZP_06255025.1| putative methylase [Prevotella oris F0302]
gi|281401769|gb|EFB32600.1| putative methylase [Prevotella oris F0302]
Length = 497
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 89/206 (43%), Gaps = 40/206 (19%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
+ + + DI +N+ I ++A + L + SLHRR + ++ L +A M+ L S
Sbjct: 133 ISVSNPDIRLNIHIAEDDATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMI-LMSGWK 191
Query: 312 GDV-FLDPMCGGGTIPVECSL----------SYPHTFFVCGDINEKLV------LKTQAN 354
GD F+DPMCG GT+ +E +L F D +++L +
Sbjct: 192 GDTDFIDPMCGSGTLLIEAALIARNISPGVFRKEFAFEKWPDFDQELFDSIYNDDSQEKE 251
Query: 355 VLH------------NSGNLNRELKVSPLVCNVRQLCF----KPACVDGIVTDLPFGKRV 398
H N+ LN + + V Q F KPA I+T+ P+G+R+
Sbjct: 252 FTHHIYGYDVDMKAVNTARLNVKAAGLSQIVTVEQQDFKDFKKPAEKSIIITNPPYGERI 311
Query: 399 GSKSNNFLLYRLFLIEIGKIVRPQIG 424
S SN Y++ IG+ ++ + G
Sbjct: 312 -STSNLLGTYKM----IGERLKHEFG 332
>gi|46446387|ref|YP_007752.1| hypothetical protein pc0753 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400028|emb|CAF23477.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 380
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNI-TTLKPTIAYNMVRLASPIP 311
VD+ + +NL I+++ A + + T LH+R + + L+ T+A ++RLA
Sbjct: 135 VDVQQPHVQLNLYIQHSLAIISFDTSGTPLHKRGYRQETVEAPLQETLAAAILRLAKYSA 194
Query: 312 GDVFLDPMCGGGTIPVECSLSYPHT 336
VFLDP CG GT+ +E +L T
Sbjct: 195 DKVFLDPCCGSGTLLIEAALMASQT 219
>gi|308180589|ref|YP_003924717.1| hypothetical protein LPST_C1406 [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|308046080|gb|ADN98623.1| hypothetical protein LPST_C1406 [Lactobacillus plantarum subsp.
plantarum ST-III]
Length = 381
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 230 HTVTSMES--ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYV--GLPVTQTSLHRR 285
H+V ++S ++A +L DTY L + L++ N+ +V L T +SL +R
Sbjct: 104 HSVPDVQSIVKKAIVNQLADTYHRSGHLPETGALFPLEVAINKDHVLLTLDTTGSSLFKR 163
Query: 286 NI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
VE LK +A +V LA P + F+DP+CG GTIP+E +L
Sbjct: 164 GYRVEKGGAPLKENMAAALVMLAKWYPDNPFVDPVCGSGTIPIEAAL 210
>gi|254556644|ref|YP_003063061.1| hypothetical protein JDM1_1477 [Lactobacillus plantarum JDM1]
gi|380032571|ref|YP_004889562.1| RNA methyltransferase [Lactobacillus plantarum WCFS1]
gi|418275334|ref|ZP_12890657.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448821270|ref|YP_007414432.1| RNA methyltransferase [Lactobacillus plantarum ZJ316]
gi|254045571|gb|ACT62364.1| conserved hypothetical protein [Lactobacillus plantarum JDM1]
gi|342241814|emb|CCC79048.1| RNA methyltransferase [Lactobacillus plantarum WCFS1]
gi|376008885|gb|EHS82214.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448274767|gb|AGE39286.1| RNA methyltransferase [Lactobacillus plantarum ZJ316]
Length = 381
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 230 HTVTSMES--ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYV--GLPVTQTSLHRR 285
H+V ++S ++A +L DTY L + L++ N+ +V L T +SL +R
Sbjct: 104 HSVPDVQSIVKKAIVNQLADTYHRSGHLPETGALFPLEVAINKDHVLLTLDTTGSSLFKR 163
Query: 286 NI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
VE LK +A +V LA P + F+DP+CG GTIP+E +L
Sbjct: 164 GYRVEKGGAPLKENMAAALVMLAKWYPDNPFVDPVCGSGTIPIEAAL 210
>gi|222053867|ref|YP_002536229.1| RNA methylase [Geobacter daltonii FRC-32]
gi|221563156|gb|ACM19128.1| putative RNA methylase [Geobacter daltonii FRC-32]
Length = 375
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD+ + D+ +N+ + N V L + L RR +E + L+ T+A ++ L+
Sbjct: 131 VDVKNPDLRVNIHLFRNHCTVSLDTSGDPLDRRGYRLERTVAPLRETLAAGLLELSGWDG 190
Query: 312 GDVFLDPMCGGGTIPVECSL 331
+ +DPMCG GTIP+E +L
Sbjct: 191 NTILVDPMCGSGTIPIEAAL 210
>gi|428776630|ref|YP_007168417.1| rRNA (guanine-N(2)-)-methyltransferase [Halothece sp. PCC 7418]
gi|428690909|gb|AFZ44203.1| rRNA (guanine-N(2)-)-methyltransferase [Halothece sp. PCC 7418]
Length = 374
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Query: 209 NFTNPEENLLKFRVTCNRVGKHT-VTSMESERAFGGKLNDTYFWL--VDLDDYDIDINLQ 265
++ +PEE L N H+ ++++ + A + D + VD++ D+ INL
Sbjct: 83 HYLSPEETLAVHCTGKNEQLNHSHFSALQVKNAIADQQRDHFGQRSNVDVESPDLIINLH 142
Query: 266 IRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGT 324
I A + L T SLHRR LK T A ++ + LDPMCG GT
Sbjct: 143 IETTHAILSLDSTGDSLHRRGYRPAMGTAPLKETFASALLAMTDWETDLPLLDPMCGSGT 202
Query: 325 IPVECSL 331
P+E L
Sbjct: 203 FPIEAGL 209
>gi|359459917|ref|ZP_09248480.1| RNA methylase [Acaryochloris sp. CCMEE 5410]
Length = 375
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+D D+ IN+ + V L + +SLHRR LK ++A ++RL+
Sbjct: 131 IDTQTPDVRINVHLHQGRCVVSLDSSGSSLHRRGYRPAVGAAPLKESLAAALIRLSGWQS 190
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DP+CG GT+P+E L
Sbjct: 191 DLAFMDPLCGSGTLPLEACL 210
>gi|389796466|ref|ZP_10199520.1| putative N6-adenine-specific DNA methylase, partial [Rhodanobacter
sp. 116-2]
gi|388448501|gb|EIM04483.1| putative N6-adenine-specific DNA methylase, partial [Rhodanobacter
sp. 116-2]
Length = 245
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIV-EFNITTLKPTIAYNM-VRLASP- 309
+D D+ DI IN+++R + A V L + + LHRR E LK +A M +R P
Sbjct: 108 IDTDEPDIRINVRVRRDRATVSLDLAGSPLHRRGWREEQGEAPLKENLACAMLLRARWPE 167
Query: 310 --IPGDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E +L
Sbjct: 168 VYAAGGALLDPMCGSGTLLIEGAL 191
>gi|384098465|ref|ZP_09999581.1| putative N6-adenine-specific DNA methylase [Imtechella halotolerans
K1]
gi|383835722|gb|EID75145.1| putative N6-adenine-specific DNA methylase [Imtechella halotolerans
K1]
Length = 385
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VDL DI I++ I+ +E V + + SLH+R NI + +A ++ ++
Sbjct: 133 VDLKYPDIRIHIHIQQSEVTVSIDSSGRSLHQRGYKTATNIAPINEVLAAGLIMMSGWDG 192
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GTIPVE ++
Sbjct: 193 QCDFMDPMCGSGTIPVEAAM 212
>gi|90961816|ref|YP_535732.1| hypothetical protein LSL_0839 [Lactobacillus salivarius UCC118]
gi|90821010|gb|ABD99649.1| Conserved hypothetical protein [Lactobacillus salivarius UCC118]
Length = 376
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 39/206 (18%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I + I ++ + L T +SL +R V LK +A +V LA P F+DP+C
Sbjct: 139 IEVAINKDKVLITLDTTGSSLFKRGYRVNKGGAPLKENMAAALVLLARWYPEMPFVDPVC 198
Query: 321 GGGTIPVECSL-------------SYPHTFFVCGDINEKLVLKTQANV-----LHNSG-- 360
G GTIP+E +L ++ + +V DI ++ + QA + L SG
Sbjct: 199 GSGTIPIEAALIGCNIAPGLKRNFAFENWDWVDKDIVKQAREQAQAAIKKDVDLDISGYD 258
Query: 361 ------NLNRELKVSPLV---CNVRQLC---FKPACVDG-IVTDLPFGKRVGSKSNNFLL 407
+ +E V V N +Q+ FK ++G IV + P+G+R+ K + L
Sbjct: 259 IDGSMIEIAKENAVQAGVQDIVNFKQMAVKDFKTDRINGVIVANPPYGERLSDKEHVHQL 318
Query: 408 YRLFLIEIGKIVRPQIGRA-ILLTSD 432
Y+ ++GK+ +P + +LTSD
Sbjct: 319 YQ----QMGKLYQPLTSWSKYILTSD 340
>gi|417788334|ref|ZP_12436017.1| putative N6-adenine-specific DNA methylase [Lactobacillus
salivarius NIAS840]
gi|418961366|ref|ZP_13513253.1| hypothetical protein SMXD51_05303 [Lactobacillus salivarius SMXD51]
gi|334308511|gb|EGL99497.1| putative N6-adenine-specific DNA methylase [Lactobacillus
salivarius NIAS840]
gi|380345033|gb|EIA33379.1| hypothetical protein SMXD51_05303 [Lactobacillus salivarius SMXD51]
Length = 376
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 39/206 (18%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I + I ++ + L T +SL +R V LK +A +V LA P F+DP+C
Sbjct: 139 IEVAINKDKVLITLDTTGSSLFKRGYRVNKGGAPLKENMAAALVLLARWYPEMPFVDPVC 198
Query: 321 GGGTIPVECSL-------------SYPHTFFVCGDINEKLVLKTQANV-----LHNSG-- 360
G GTIP+E +L ++ + +V DI ++ + QA + L SG
Sbjct: 199 GSGTIPIEAALIGCNIAPGLKRNFAFENWDWVDKDIIKQAREQAQAAIKKDIDLDISGYD 258
Query: 361 ------NLNRELKVSPLV---CNVRQLC---FKPACVDG-IVTDLPFGKRVGSKSNNFLL 407
+ +E V V N +Q+ FK ++G IV + P+G+R+ K + L
Sbjct: 259 IDGSMIEIAKENAVQAGVQDIVNFKQMAVKDFKTDKINGVIVANPPYGERLSDKEHVHQL 318
Query: 408 YRLFLIEIGKIVRPQIGRA-ILLTSD 432
Y+ ++GK+ +P + +LTSD
Sbjct: 319 YQ----QMGKLYQPLTSWSKYILTSD 340
>gi|241843593|ref|XP_002415449.1| THUMPD3 protein, putative [Ixodes scapularis]
gi|215509661|gb|EEC19114.1| THUMPD3 protein, putative [Ixodes scapularis]
Length = 117
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 19 IEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIA 78
IEATVVTG E + +EC K G + GR+FF + + + +V +L+GIDN+ ++
Sbjct: 36 IEATVVTGLEHIAKDECWSKLGAQPETAR--GRIFFELPVDRVGEVWKLQGIDNLFVVLD 93
Query: 79 TFEN 82
TF++
Sbjct: 94 TFKD 97
>gi|301301206|ref|ZP_07207362.1| conserved hypothetical protein [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300851205|gb|EFK78933.1| conserved hypothetical protein [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 376
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 39/206 (18%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I + I ++ + L T +SL +R V LK +A +V LA P F+DP+C
Sbjct: 139 IEVAINKDKVLITLDTTGSSLFKRGYRVNKGGAPLKENMAATLVLLARWYPEMPFVDPVC 198
Query: 321 GGGTIPVECSL-------------SYPHTFFVCGDINEKLVLKTQANV-----LHNSG-- 360
G GTIP+E +L ++ +V DI ++ + QA + L SG
Sbjct: 199 GSGTIPIEAALIGCNIAPGLKRNFAFEDWDWVDKDIIKQAREQAQAAIKKDIDLDISGYD 258
Query: 361 ------NLNRELKVSPLV---CNVRQLC---FKPACVDG-IVTDLPFGKRVGSKSNNFLL 407
+ +E V V N +Q+ FK ++G IV + P+G+R+ K + L
Sbjct: 259 IDGSMIEIAKENAVQAGVQDIVNFKQMAVKDFKTDKINGVIVANPPYGERLSDKEHVHQL 318
Query: 408 YRLFLIEIGKIVRPQIGRA-ILLTSD 432
Y+ ++GK+ +P + +LTSD
Sbjct: 319 YQ----QMGKLYQPLTSWSKYILTSD 340
>gi|448433648|ref|ZP_21585975.1| RNA methylase [Halorubrum tebenquichense DSM 14210]
gi|445686240|gb|ELZ38576.1| RNA methylase [Halorubrum tebenquichense DSM 14210]
Length = 362
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 85/231 (36%), Gaps = 35/231 (15%)
Query: 228 GKHTVTSMESERAFGGKLNDTYFWLVDLDD--------------YDIDINLQIRYNEAYV 273
G V++ +ERA GG L D F VDLDD D D +A V
Sbjct: 90 GTSGVSTAAAERALGGVLVDRGF-DVDLDDPDHVLRALFAAGPRADHDAVAGADGGDADV 148
Query: 274 GLPVTQTSLHRRNIVE-------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIP 326
+ R+ F ++ P A LA PG LDPMCG G +P
Sbjct: 149 CALGWVAAEAARDFAPDPTDRPFFQPGSMAPADARAYANLAGAAPGRTLLDPMCGTGGLP 208
Query: 327 VECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP----LVCNVRQLCFKP 382
+E L V D K+V + N+ G+ SP + L F
Sbjct: 209 LEAGLVGADA--VACDAQAKMVRGARENLREYVGD---PADGSPDWHVARGDATALPFPD 263
Query: 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433
VDG+ D P+G++ SK L L + + R + +L +DR
Sbjct: 264 DAVDGVAFDAPYGRQ--SKIARHELADLVAGALAEAAR--VAPRAVLVADR 310
>gi|448735253|ref|ZP_21717469.1| RNA methylase [Halococcus salifodinae DSM 8989]
gi|445798591|gb|EMA48988.1| RNA methylase [Halococcus salifodinae DSM 8989]
Length = 343
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 74/172 (43%), Gaps = 23/172 (13%)
Query: 238 ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQT--SLHRRNIVE---FNI 292
ER GG L D F VDLDD D ++ +G VT++ R + F
Sbjct: 119 ERRLGGVLTDHGF-AVDLDDPDHELRALFADGTCILGWLVTESVRDFGPRKPTKKPFFKP 177
Query: 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQ 352
++ P +A +V +A G++ +DPMCG G I VE L V D+ + Q
Sbjct: 178 GSMDPLLARALVNIAGARSGNLLVDPMCGTGGILVEAGL-------VEADV---VGFDAQ 227
Query: 353 ANVLHNSG-NLNREL--KVSPLVCNVR----QLCFKPACVDGIVTDLPFGKR 397
A + H + NL L + P R +L + D +V D P+G++
Sbjct: 228 ATMAHGAARNLAHYLDGEADPEFATARSDATRLPLRDDAADAVVFDAPYGRQ 279
>gi|443327187|ref|ZP_21055819.1| putative N6-adenine-specific DNA methylase [Xenococcus sp. PCC
7305]
gi|442793218|gb|ELS02673.1| putative N6-adenine-specific DNA methylase [Xenococcus sp. PCC
7305]
Length = 374
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 10/131 (7%)
Query: 208 TNFTNPEENLLKFRVTC---NRVGKHT-VTSMESERAFGGKLNDTYFWLVDLDDY--DID 261
+ + NPE + VTC N+ H+ T+++ + A + Y D++ D+
Sbjct: 82 SAYLNPE---MTLAVTCTGKNKQLNHSHFTALQIKNAIVDQQQKQYNKRSDINAEAPDLL 138
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
+N I N + L + +SLHRR LK T+A ++++ P F DP+C
Sbjct: 139 VNAHIDNNRCIISLDSSGSSLHRRGYRPAMGRAPLKETLAAALIQMTDWTPELAFFDPLC 198
Query: 321 GGGTIPVECSL 331
G GT+P+E ++
Sbjct: 199 GSGTLPIEAAM 209
>gi|448648757|ref|ZP_21679822.1| RNA methylase [Haloarcula californiae ATCC 33799]
gi|445774501|gb|EMA25517.1| RNA methylase [Haloarcula californiae ATCC 33799]
Length = 343
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 98/247 (39%), Gaps = 35/247 (14%)
Query: 232 VTSMESERAFGGKLNDTYFWLVDLDD---------YDIDINLQIRYNEAYVGLP-VTQTS 281
+ + ++ER GG L D F VDLDD D D + + EA L +T S
Sbjct: 93 IDTQQAERTLGGVLTDRGF-AVDLDDPDHVLYAYLSDPDGDEEGGTGEACCALCWLTAES 151
Query: 282 LH---RRNIVE---FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH 335
+ R + F ++ P A +V +A P LDPMCG G + +E L
Sbjct: 152 VRDFGGRQPTDRPFFQPGSMDPLEARALVNIAGAGPDATILDPMCGTGGLLLEAGLV--G 209
Query: 336 TFFVCGDINEKLVLKTQANV---LHNSGNLNRELKVSP-----LVCNVRQLCFKPACVDG 387
V GD EK+V T+ N+ L G+ R P + L VD
Sbjct: 210 ADVVGGDAQEKMVSGTRKNLAYALDGDGHPERASYPDPGEWGVFRSDASALPVADDTVDA 269
Query: 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALW 447
+V D P+G++ + + L L E ++ GR +L+ +DR A T A W
Sbjct: 270 VVFDAPYGRQSRIEGDLAPLVSGALGEAARVA----GRCVLV-ADRDWREAA---TGAGW 321
Query: 448 KCRKQIK 454
K
Sbjct: 322 AVTDYFK 328
>gi|323453479|gb|EGB09350.1| hypothetical protein AURANDRAFT_12176, partial [Aureococcus
anophagefferens]
Length = 395
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE--FNITTLKPTIAYNMVRLAS-- 308
VD D+ ++L + Y+EA + V SLH+R + L+ T+A ++ LA
Sbjct: 137 VDTKACDVPVHLYVDYDEARLYRAVASESLHKRGYRGDVAHKAALRTTVAAGLLYLADWP 196
Query: 309 --PIPGDVFLDPMCGGGTIPVECSL 331
G V DPMCG GT+PVE +L
Sbjct: 197 AKAAAGAVLCDPMCGSGTLPVEAAL 221
>gi|365853561|ref|ZP_09393828.1| hypothetical protein HMPREF9103_02623 [Lactobacillus parafarraginis
F0439]
gi|363712186|gb|EHL95885.1| hypothetical protein HMPREF9103_02623 [Lactobacillus parafarraginis
F0439]
Length = 382
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 110/242 (45%), Gaps = 43/242 (17%)
Query: 230 HTVTSMES--ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPV--TQTSLHRR 285
H+V ++ ++A L++TY L + L++ N+ +V L + T +SL +R
Sbjct: 106 HSVPDSQAIVKKAIVSSLSETYHRHTRLPETGALFPLEVAINKDHVMLTLDTTGSSLFKR 165
Query: 286 NI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL---SYPHTF---F 338
+E LK +A ++ L S P FLDPMCG GT+P+E +L + F F
Sbjct: 166 GYRIEKGPAPLKENMAAALILLTSWYPDMPFLDPMCGSGTLPIEAALIGRNIAPGFNRDF 225
Query: 339 VC---------------GDINEKLVLKTQANVLHN--SGNLNRELKVSPLVCNV------ 375
+C + + K +T+ ++ N G++ K + L +
Sbjct: 226 ICEQWPWISSTVAQEVRDEADAKADYETELDIAGNDIDGSMIEISKRNALEAGLADDIHF 285
Query: 376 RQLC---FKPACVDG-IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA-ILLT 430
+Q+ FK ++G I+ + P+G+R+ K + LY+ ++G+ RP + LT
Sbjct: 286 KQVAVADFKTDKINGVIIGNPPYGQRMSDKESVHKLYK----QMGQTFRPMTSWSKYFLT 341
Query: 431 SD 432
SD
Sbjct: 342 SD 343
>gi|222481034|ref|YP_002567271.1| RNA methylase [Halorubrum lacusprofundi ATCC 49239]
gi|222453936|gb|ACM58201.1| putative RNA methylase [Halorubrum lacusprofundi ATCC 49239]
Length = 356
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F ++ PT A LA PG LDPMCG G +P+E + C D K+V
Sbjct: 182 FQPGSMSPTDARAYANLAGAAPGRTLLDPMCGTGGLPLEAGI-VGSDVIAC-DAQTKMVR 239
Query: 350 KTQANVLHNSGNLNRELKVSPLVCNVRQ-----LCFKPACVDGIVTDLPFGK 396
T+ N+ LN L S +V + L + VDG+ D P+G+
Sbjct: 240 GTRENLRE---YLNTALDDSGPDWHVARGDATALPLRDDAVDGVAFDAPYGR 288
>gi|448457843|ref|ZP_21595848.1| RNA methylase [Halorubrum lipolyticum DSM 21995]
gi|445810144|gb|EMA60175.1| RNA methylase [Halorubrum lipolyticum DSM 21995]
Length = 360
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 74/194 (38%), Gaps = 32/194 (16%)
Query: 232 VTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRY-----NEAYVGLPVTQTSLHRRN 286
V++ +ER GG L D F VDLDD D + +EA G + S+
Sbjct: 102 VSTGAAERELGGVLVDRGF-DVDLDDPDHVLRALFAAGERDDHEAVPGADGGEASVCALG 160
Query: 287 IVE----------------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECS 330
V F ++ P A V LA PG LDPMCG G +P+E
Sbjct: 161 WVAVEAARDFAPKPTDRPFFQPGSMAPADARAYVNLAGAAPGRTLLDPMCGTGGLPLEAG 220
Query: 331 LSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC--------NVRQLCFKP 382
L + V D K+V T+ N+ G + SP + L +
Sbjct: 221 LV--GSDAVACDAQAKMVRGTRENLREYVGGGDGGDADSPDFAPDWHVARGDATDLPLRD 278
Query: 383 ACVDGIVTDLPFGK 396
VDG+ D P+G+
Sbjct: 279 DAVDGVAFDAPYGR 292
>gi|448628577|ref|ZP_21672346.1| RNA methylase [Haloarcula vallismortis ATCC 29715]
gi|445758108|gb|EMA09433.1| RNA methylase [Haloarcula vallismortis ATCC 29715]
Length = 343
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 79/197 (40%), Gaps = 41/197 (20%)
Query: 232 VTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTS---------- 281
+ + ++ER GG L D F VDLDD D + Y AY+ P
Sbjct: 93 IDTQQAERTLGGVLTDRDF-AVDLDDPD-----HVLY--AYLSDPAGDEEGGTGEACCAL 144
Query: 282 --LHRRNIVEFN-----------ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVE 328
L ++ +F ++ P A +V +A P LDPMCG G + +E
Sbjct: 145 GWLAAESVRDFGQRQPTDRPFFQPGSMDPLEARALVNIAGAGPDTTVLDPMCGTGGLLLE 204
Query: 329 CSLSYPHTFFVCGDINEKLVLKTQANV---LHNSGNLNRELKVSP-----LVCNVRQLCF 380
L V GD EK+V T+ N+ L G+ +R+ P + + L
Sbjct: 205 AGLV--GADVVGGDAQEKMVSGTRENLKYALDGDGHPDRDAYPEPGDWGVVRSDASALPV 262
Query: 381 KPACVDGIVTDLPFGKR 397
VD +V D P+G++
Sbjct: 263 AGDAVDAVVFDAPYGRQ 279
>gi|340353983|ref|ZP_08676778.1| putative N6-adenine-specific DNA methylase [Prevotella pallens ATCC
700821]
gi|339607903|gb|EGQ12826.1| putative N6-adenine-specific DNA methylase [Prevotella pallens ATCC
700821]
Length = 497
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
+ + + DI +N+ I ++A + L + SLHRR + ++ L +A M+ +
Sbjct: 132 ISVSNPDIRLNIHIAEDKATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMILMTGWKG 191
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GT+P+E +L
Sbjct: 192 ETDFIDPMCGSGTLPIEAAL 211
>gi|402308216|ref|ZP_10827225.1| RNA methylase, PF01170 family [Prevotella sp. MSX73]
gi|400375660|gb|EJP28555.1| RNA methylase, PF01170 family [Prevotella sp. MSX73]
Length = 517
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDV-FL 316
DI +N+ I ++A + L + SLHRR + ++ L +A M+ L + GD F+
Sbjct: 139 DIRLNIHIAEDDATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMI-LMTGWKGDTDFI 197
Query: 317 DPMCGGGTIPVECSL 331
DPMCG GTI +E +L
Sbjct: 198 DPMCGSGTIAIEAAL 212
>gi|315607862|ref|ZP_07882855.1| N6-adenine-specific DNA methylase [Prevotella buccae ATCC 33574]
gi|315250331|gb|EFU30327.1| N6-adenine-specific DNA methylase [Prevotella buccae ATCC 33574]
Length = 517
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDV-FL 316
DI +N+ I ++A + L + SLHRR + ++ L +A M+ L + GD F+
Sbjct: 139 DIRLNIHIAEDDATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMI-LMTGWKGDTDFI 197
Query: 317 DPMCGGGTIPVECSL 331
DPMCG GTI +E +L
Sbjct: 198 DPMCGSGTIAIEAAL 212
>gi|440288239|ref|YP_007341004.1| putative N6-adenine-specific DNA methylase [Enterobacteriaceae
bacterium strain FGI 57]
gi|440047761|gb|AGB78819.1| putative N6-adenine-specific DNA methylase [Enterobacteriaceae
bacterium strain FGI 57]
Length = 701
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+++ +A++ L ++ LH R + + +K +A +V + +P
Sbjct: 130 VDRENPDLRINVRLNKEKAFISLDLSGEGLHLRGYRDRTGLAPIKENLAAAIVMRSGWVP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|303236387|ref|ZP_07322977.1| THUMP domain protein [Prevotella disiens FB035-09AN]
gi|302483445|gb|EFL46450.1| THUMP domain protein [Prevotella disiens FB035-09AN]
Length = 527
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
+ + + DI +N+ I ++A + L + SLHRR + ++ L +A M+ +
Sbjct: 164 ISVSNPDIRLNIHIAEDKATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMILMTGWKG 223
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GT+P+E +L
Sbjct: 224 ETDFIDPMCGSGTLPIEAAL 243
>gi|325860274|ref|ZP_08173396.1| THUMP domain protein [Prevotella denticola CRIS 18C-A]
gi|325482153|gb|EGC85164.1| THUMP domain protein [Prevotella denticola CRIS 18C-A]
Length = 504
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
+ + + DI +N+ + ++A + L + SLHRR + ++ L +A M+ +
Sbjct: 132 ISVSNPDICLNIHVAEDDATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMILMTGWTG 191
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GT+PVE +L
Sbjct: 192 ETDFIDPMCGSGTLPVEAAL 211
>gi|423119549|ref|ZP_17107233.1| ribosomal RNA large subunit methyltransferase L [Klebsiella oxytoca
10-5246]
gi|376398203|gb|EHT10830.1| ribosomal RNA large subunit methyltransferase L [Klebsiella oxytoca
10-5246]
Length = 701
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+ + A++ L ++ LH R + + +K T+A +V + +P
Sbjct: 130 VDRENPDLRINVWLNKETAHISLDLSGEGLHLRGYRDGTGMAPIKETLASAIVMRSGWVP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|352081784|ref|ZP_08952626.1| rRNA (guanine-N(2)-)-methyltransferase [Rhodanobacter sp. 2APBS1]
gi|351682690|gb|EHA65786.1| rRNA (guanine-N(2)-)-methyltransferase [Rhodanobacter sp. 2APBS1]
Length = 728
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIV-EFNITTLKPTIAYNM-VRLASP- 309
+D D+ DI IN+++R + A V L + + LHRR E LK +A M +R P
Sbjct: 130 IDTDEPDIRINVRVRRDRATVSLDLAGSPLHRRGWREEQGEAPLKENLACAMLLRARWPE 189
Query: 310 --IPGDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E +L
Sbjct: 190 VYAAGGALLDPMCGSGTLLIEGAL 213
>gi|345303285|ref|YP_004825187.1| rRNA (guanine-N(2)-)-methyltransferase [Rhodothermus marinus
SG0.5JP17-172]
gi|345112518|gb|AEN73350.1| rRNA (guanine-N(2)-)-methyltransferase [Rhodothermus marinus
SG0.5JP17-172]
Length = 408
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 11/130 (8%)
Query: 210 FTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKL------NDTYFWLVDLDDYDIDIN 263
+ +PE+ +F V R G H TSM+ R G + + DLD D++I
Sbjct: 108 YLHPEQ---RFAVRAQRHGSHDFTSMDVAREVGSAVVERVQAHTGRRIRADLDAPDVEIM 164
Query: 264 LQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPG--DVFLDPMCG 321
++ ++ + L + + LHRR+ F + S P D+ +DPM G
Sbjct: 165 AELSDDQLLLLLNTSGSPLHRRHHRAFQHFAPLLPTLAAALLRLSSFPNNVDLLIDPMAG 224
Query: 322 GGTIPVECSL 331
GGTIP+E +L
Sbjct: 225 GGTIPIEAAL 234
>gi|334880553|emb|CCB81303.1| putative uncharacterized protein lp_1756 [Lactobacillus pentosus
MP-10]
gi|339636760|emb|CCC15550.1| putative uncharacterized protein lp_1756 [Lactobacillus pentosus
IG1]
Length = 380
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 230 HTVTSMES--ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYV--GLPVTQTSLHRR 285
H+V ++S ++A +L++TY L + L++ N+ +V L T +SL +R
Sbjct: 104 HSVPDVQSIVKKAIVNQLSETYHRSGHLPETGALFPLEVAINKDHVLLTLDTTGSSLFKR 163
Query: 286 NI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
VE LK +A +V LA P + F+DP+CG GTIP+E +L
Sbjct: 164 GYRVEKGGAPLKENMAAALVMLAKWYPDNPFVDPVCGSGTIPIEAAL 210
>gi|385840435|ref|YP_005863759.1| hypothetical protein HN6_00695 [Lactobacillus salivarius CECT 5713]
gi|300214556|gb|ADJ78972.1| Putative uncharacterized protein [Lactobacillus salivarius CECT
5713]
Length = 376
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 39/206 (18%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I + I ++ + L T +SL +R V LK +A +V LA P F+DP+C
Sbjct: 139 IEVAINKDKVLITLDTTGSSLFKRGYRVNKGGAPLKENMAAALVLLARWYPEMPFVDPVC 198
Query: 321 GGGTIPVECSL-------------SYPHTFFVCGDINEKLVLKTQANV-----LHNSG-- 360
G GTIP+E +L ++ +V DI ++ + QA + L SG
Sbjct: 199 GSGTIPIEAALIGCNIAPGLKRNFAFEDWDWVDKDIIKQAREQAQAAIKKDIDLDISGYD 258
Query: 361 ------NLNRELKVSPLV---CNVRQLC---FKPACVDG-IVTDLPFGKRVGSKSNNFLL 407
+ +E V V N +Q+ FK ++G IV + P+G+R+ K + L
Sbjct: 259 IDGSMIEIAKENAVQAGVQDIVNFKQMAVKDFKTDKINGVIVANPPYGERLSDKEHVHQL 318
Query: 408 YRLFLIEIGKIVRPQIGRA-ILLTSD 432
Y+ ++GK+ +P + +LTSD
Sbjct: 319 YQ----QMGKLYQPLTSWSKYILTSD 340
>gi|225011824|ref|ZP_03702262.1| putative RNA methylase [Flavobacteria bacterium MS024-2A]
gi|225004327|gb|EEG42299.1| putative RNA methylase [Flavobacteria bacterium MS024-2A]
Length = 387
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
V+++ D+ INL I+ ++ + L + SLH R NI L +A +++L+
Sbjct: 133 VEMNRPDLRINLHIQNDQCTISLDSSGASLHHRGYRTATNIAPLNEVLAAGLIQLSGWKG 192
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F DPMCG GTI +E +L
Sbjct: 193 NTDFYDPMCGSGTILIEAAL 212
>gi|425458915|ref|ZP_18838401.1| putative enzyme [Microcystis aeruginosa PCC 9808]
gi|389823575|emb|CCI28137.1| putative enzyme [Microcystis aeruginosa PCC 9808]
Length = 375
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 252 LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPI 310
VD ++ D+ IN I N + L + SLHRR + LK ++A +V L++
Sbjct: 130 FVDTENPDLQINAHIEKNRCVLSLDSSGHSLHRRGYHRAMGVAPLKESLAAALVELSAWQ 189
Query: 311 PGDVFLDPMCGGGTIPVECSL 331
V LDP CG GTI +E +L
Sbjct: 190 DDMVLLDPFCGSGTIVIEATL 210
>gi|425452888|ref|ZP_18832703.1| putative enzyme [Microcystis aeruginosa PCC 7941]
gi|440755897|ref|ZP_20935098.1| RNA methylase UPF0020 family protein [Microcystis aeruginosa
TAIHU98]
gi|389765166|emb|CCI08903.1| putative enzyme [Microcystis aeruginosa PCC 7941]
gi|440173119|gb|ELP52577.1| RNA methylase UPF0020 family protein [Microcystis aeruginosa
TAIHU98]
Length = 375
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 252 LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPI 310
VD ++ D+ IN I N + L + SLHRR + LK ++A +V L++
Sbjct: 130 FVDTENPDLQINAHIEKNRCVLSLDSSGHSLHRRGYHRAMGVAPLKESLAAALVELSAWQ 189
Query: 311 PGDVFLDPMCGGGTIPVECSL 331
V LDP CG GTI +E +L
Sbjct: 190 DDMVLLDPFCGSGTIVIEATL 210
>gi|288924838|ref|ZP_06418775.1| putative N6-adenine-specific DNA methylase [Prevotella buccae D17]
gi|288338625|gb|EFC76974.1| putative N6-adenine-specific DNA methylase [Prevotella buccae D17]
Length = 517
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDV-FL 316
DI +N+ I ++A + L + SLHRR + ++ L +A M+ L + GD F+
Sbjct: 139 DIRLNIHIAEDDATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMI-LMTGWKGDTDFI 197
Query: 317 DPMCGGGTIPVECSL 331
DPMCG GTI +E +L
Sbjct: 198 DPMCGSGTIAIEAAL 212
>gi|425434524|ref|ZP_18814992.1| putative enzyme [Microcystis aeruginosa PCC 9432]
gi|389675985|emb|CCH94939.1| putative enzyme [Microcystis aeruginosa PCC 9432]
Length = 375
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 252 LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPI 310
VD ++ D+ IN I N + L + SLHRR + LK ++A +V L++
Sbjct: 130 FVDTENPDLQINAHIEKNRCVLSLDSSGHSLHRRGYHRAMGVAPLKESLAAALVELSAWQ 189
Query: 311 PGDVFLDPMCGGGTIPVECSL 331
V LDP CG GTI +E +L
Sbjct: 190 DDMVLLDPFCGSGTIVIEATL 210
>gi|158336702|ref|YP_001517876.1| RNA methylase [Acaryochloris marina MBIC11017]
gi|158306943|gb|ABW28560.1| RNA methylase, putative [Acaryochloris marina MBIC11017]
Length = 375
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+D D+ IN+ + V L + +SLHRR LK ++A ++RL+
Sbjct: 131 IDTQTPDVRINVHLHQARCVVNLDSSGSSLHRRGYRPAVGAAPLKESLAAALIRLSGWQS 190
Query: 312 GDVFLDPMCGGGTIPVECSLS----YPHTF 337
F+DP+CG GT+P+E L P TF
Sbjct: 191 DLAFMDPLCGSGTLPLEACLQGLRIAPGTF 220
>gi|389792741|ref|ZP_10195924.1| 23S rRNA m(2)G2445 methyltransferase [Rhodanobacter fulvus Jip2]
gi|388435828|gb|EIL92721.1| 23S rRNA m(2)G2445 methyltransferase [Rhodanobacter fulvus Jip2]
Length = 728
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNM-VRLASP- 309
+D D+ DI IN+++R + A + L + + LHRR E LK +A M +R P
Sbjct: 130 IDTDEPDIRINVRLRRDRATLSLDLAGSPLHRRGWRELQGEAPLKENLAAAMLLRGRWPE 189
Query: 310 --IPGDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E +L
Sbjct: 190 IYAAGGALLDPMCGSGTLLIEGAL 213
>gi|443664993|ref|ZP_21133582.1| RNA methylase UPF0020 family protein [Microcystis aeruginosa
DIANCHI905]
gi|159026294|emb|CAO88871.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443331449|gb|ELS46104.1| RNA methylase UPF0020 family protein [Microcystis aeruginosa
DIANCHI905]
Length = 375
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 252 LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPI 310
VD ++ D+ IN I N + L + SLHRR + LK ++A +V L++
Sbjct: 130 FVDTENPDLQINAHIEKNRCVLSLDSSGHSLHRRGYHRAMGVAPLKESLAAALVELSAWQ 189
Query: 311 PGDVFLDPMCGGGTIPVECSL 331
V LDP CG GTI +E +L
Sbjct: 190 DDMVLLDPFCGSGTIVIEATL 210
>gi|224368943|ref|YP_002603107.1| putative RNA methylase family protein [Desulfobacterium
autotrophicum HRM2]
gi|223691660|gb|ACN14943.1| putative RNA methylase family protein [Desulfobacterium
autotrophicum HRM2]
Length = 403
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 50/199 (25%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
V+ D D+ INL IR A + + + +LH+R E ++T ++ TIA ++R++
Sbjct: 160 VNTLDPDVMINLHIRKETADISIDASGGALHKRGYREESVTAPMQETIAAAIIRISGWDG 219
Query: 312 GDVFLDPMCGGGTIPVECSLSYPH----------TFFVCGDINEKLV--LKTQANV---- 355
DPMCG GT+ E + H F + D N L +KT+AN
Sbjct: 220 TRPLYDPMCGSGTLLCEALMHQCHIPAGIFRQRFGFEILPDFNPDLWNQVKTEANAGIIP 279
Query: 356 -------------------------LHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390
LHN G +VS L + RQ+ + IV
Sbjct: 280 IAQGLIAGSDIAESSVTAARTNLMGLHNGG------QVSVLNMDFRQIQALEDTI--IVA 331
Query: 391 DLPFGKRVGSKSNNFLLYR 409
+ P+G R+G +S+ + +R
Sbjct: 332 NPPYGIRMGKESDLKVFHR 350
>gi|427714243|ref|YP_007062867.1| putative N6-adenine-specific DNA methylase [Synechococcus sp. PCC
6312]
gi|427378372|gb|AFY62324.1| putative N6-adenine-specific DNA methylase [Synechococcus sp. PCC
6312]
Length = 374
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD D+ +++ I + V L + SLHRR LK ++A +++L+ P
Sbjct: 130 VDAKSPDVQVSIHIEADICTVSLDSSGESLHRRGYRPAVGAAPLKESLAAALIQLSEWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
+F DP+CG GT+P+E L
Sbjct: 190 EQMFYDPLCGSGTLPLEACL 209
>gi|392948849|ref|ZP_10314450.1| N6-adenine-specific DNA methylase [Lactobacillus pentosus KCA1]
gi|392435941|gb|EIW13864.1| N6-adenine-specific DNA methylase [Lactobacillus pentosus KCA1]
Length = 380
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 230 HTVTSMES--ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYV--GLPVTQTSLHRR 285
H+V ++S ++A +L++TY L + L++ N+ +V L T +SL +R
Sbjct: 104 HSVPDVQSIVKKAIVNQLSETYHRSGHLPETGALFPLEVTINKDHVLLTLDTTGSSLFKR 163
Query: 286 NI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
VE LK +A +V LA P + F+DP+CG GTIP+E +L
Sbjct: 164 GYRVEKGGAPLKENMAAALVMLAKWYPDNPFVDPVCGSGTIPIEAAL 210
>gi|417810280|ref|ZP_12456959.1| hypothetical protein LSGJ_01122 [Lactobacillus salivarius GJ-24]
gi|335349076|gb|EGM50576.1| hypothetical protein LSGJ_01122 [Lactobacillus salivarius GJ-24]
Length = 376
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 39/206 (18%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I + I ++ + L T +SL +R V LK +A +V LA P F+DP+C
Sbjct: 139 IEVAINKDKVLITLDTTGSSLFKRGYRVNKGGAPLKENMAAALVLLARWYPEMPFVDPVC 198
Query: 321 GGGTIPVECSL-------------SYPHTFFVCGDINEKLVLKTQANV-----LHNSG-- 360
G GTIP+E +L ++ + +V DI ++ + QA + L SG
Sbjct: 199 GSGTIPIEAALIGCNIAPGLKRNFAFENWDWVDKDIVKQAREQAQAAIKKDVDLDISGYD 258
Query: 361 ------NLNRELKVSPLV---CNVRQLC---FKPACVDG-IVTDLPFGKRVGSKSNNFLL 407
+ +E V V N +Q+ FK ++G IV + P+G+R+ K + L
Sbjct: 259 IDGSMIEIAKENVVQAGVQDIVNFKQMAVKDFKTDKINGVIVANPPYGERLSDKEHVHQL 318
Query: 408 YRLFLIEIGKIVRPQIGRA-ILLTSD 432
Y+ ++GK+ +P + +LTSD
Sbjct: 319 YQ----QMGKLYQPLTSWSKYILTSD 340
>gi|268316929|ref|YP_003290648.1| RNA methylase [Rhodothermus marinus DSM 4252]
gi|262334463|gb|ACY48260.1| putative RNA methylase [Rhodothermus marinus DSM 4252]
Length = 408
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 210 FTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKL------NDTYFWLVDLDDYDIDIN 263
+ +PE+ +F V R G H TSM+ R G + + DLD D++I
Sbjct: 108 YLHPEQ---RFAVRAQRHGSHDFTSMDVAREVGSAVVERVQAHTGRRIRADLDTPDVEIM 164
Query: 264 LQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPG--DVFLDPMCG 321
++ ++ + L + LHRR+ F + S P D+ +DPM G
Sbjct: 165 AELSDDQLLLLLNTSGPPLHRRHHRAFQHFAPLLPTLAAALLRLSSFPNNVDLLIDPMAG 224
Query: 322 GGTIPVECSL 331
GGTIP+E +L
Sbjct: 225 GGTIPIEAAL 234
>gi|227890837|ref|ZP_04008642.1| site-specific DNA-methyltransferase [Lactobacillus salivarius ATCC
11741]
gi|227867246|gb|EEJ74667.1| site-specific DNA-methyltransferase [Lactobacillus salivarius ATCC
11741]
Length = 376
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 39/206 (18%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I + I ++ + L T +SL +R V LK +A +V LA P F+DP+C
Sbjct: 139 IEVAINKDKVLITLDTTGSSLFKRGYRVNKGGAPLKENMAAALVLLARWYPEMPFVDPVC 198
Query: 321 GGGTIPVECSL-------------SYPHTFFVCGDINEKLVLKTQANV-----LHNSG-- 360
G GTIP+E +L ++ +V DI ++ + QA + L SG
Sbjct: 199 GSGTIPIEAALIGCNIAPGLKRNFAFEDWDWVDKDIIKQAREQAQAAIKKDIDLDISGYD 258
Query: 361 ------NLNRELKVSPL---VCNVRQLC---FKPACVDG-IVTDLPFGKRVGSKSNNFLL 407
+ +E V V N +Q+ FK ++G IV + P+G+R+ K + L
Sbjct: 259 IDGSMIEIAKENAVQAGVQDVVNFKQMAVKDFKTDKINGVIVANPPYGERLSDKEHVHQL 318
Query: 408 YRLFLIEIGKIVRPQIGRA-ILLTSD 432
Y+ ++GK+ +P + +LTSD
Sbjct: 319 YQ----QMGKLYQPLTSWSKYILTSD 340
>gi|389737195|ref|ZP_10190662.1| 23S rRNA m(2)G2445 methyltransferase [Rhodanobacter sp. 115]
gi|388436808|gb|EIL93649.1| 23S rRNA m(2)G2445 methyltransferase [Rhodanobacter sp. 115]
Length = 728
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYN-MVRLASP- 309
VD D+ D+ INL +R + A V L + + LHRR E LK +A ++R P
Sbjct: 130 VDTDEPDVRINLHLRRDRAIVSLDLAGSPLHRRGWRELQGEAPLKENLAAAILLRARWPE 189
Query: 310 --IPGDVFLDPMCGGGTIPVECS 330
G LDPMCG GT+ +E +
Sbjct: 190 TYAAGGALLDPMCGSGTLLIEGA 212
>gi|11498856|ref|NP_070085.1| hypothetical protein AF1257 [Archaeoglobus fulgidus DSM 4304]
gi|3183242|sp|O29011.1|TMG10_ARCFU RecName: Full=tRNA (guanine(10)-N2)-dimethyltransferase; AltName:
Full=tRNA:G10 dimethyltransferase
gi|2649321|gb|AAB89985.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 320
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 27/222 (12%)
Query: 221 RVTCNRV-GKHTVTSMESERAFGGKLNDTYFWL----VDLDDYDIDINLQIRYNEAYVGL 275
R+ C RV G T++E R G L W V + + +I + I+ ++ YVGL
Sbjct: 82 RLCCVRVKGGKGKTALE--RKLGALL-----WKRGAKVSVSNPEIVYKVYIQDDKCYVGL 134
Query: 276 -----PVTQTSLHRRNIVEFNI-TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
Q L R + F + + +KP +A +V L + G+ LDPMCG G+ +E
Sbjct: 135 LEFERDTRQFFLRRPDRRPFLMPSAIKPKLARALVNLTGVLEGETLLDPMCGTGSFLIEA 194
Query: 330 SLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389
L + + D EK+V + N+ + ++ S L+ + + L + V GI
Sbjct: 195 GLMGINPIGI--DFIEKIVRGCRVNLEYYG------IEGSVLLGDAKNLPLRDESVRGIA 246
Query: 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431
TD P+ + + LY E ++++ + GRA ++T+
Sbjct: 247 TDYPYLRSTKAAGTLDELYSKTSEEFERVLK-KGGRAAIVTN 287
>gi|90410324|ref|ZP_01218340.1| hypothetical N6-adenine-specific DNA methylase [Photobacterium
profundum 3TCK]
gi|90328565|gb|EAS44849.1| hypothetical N6-adenine-specific DNA methylase [Photobacterium
profundum 3TCK]
Length = 712
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+D D D+ I++++ + +GL + + LH+R E L+ T A +V + P
Sbjct: 130 IDRDQPDLRIHMRLSGEKGVLGLDMAGSGLHQRGYRTEAGRAPLRETHAAALVLKSGWTP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GQPLLDPMCGSGTLLIEAAM 209
>gi|254409808|ref|ZP_05023589.1| Putative RNA methylase family UPF0020 [Coleofasciculus
chthonoplastes PCC 7420]
gi|196183805|gb|EDX78788.1| Putative RNA methylase family UPF0020 [Coleofasciculus
chthonoplastes PCC 7420]
Length = 374
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
V++D D+ +N+ + N + L + TSLHRR + LK T+A ++ LA P
Sbjct: 130 VNIDKPDLLVNVHLHQNRCILSLDSSGTSLHRRGYRSAMGLAPLKETLAAALLELAEWHP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
LDPMCG GTIP+E SL
Sbjct: 190 QLPLLDPMCGSGTIPLEASL 209
>gi|119620744|gb|EAX00339.1| THUMP domain containing 2, isoform CRA_a [Homo sapiens]
gi|119620745|gb|EAX00340.1| THUMP domain containing 2, isoform CRA_a [Homo sapiens]
gi|158257436|dbj|BAF84691.1| unnamed protein product [Homo sapiens]
gi|193787535|dbj|BAG52741.1| unnamed protein product [Homo sapiens]
Length = 303
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 21/167 (12%)
Query: 150 NDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDL-------QNQELKEIDINSMCS 202
N+I+ K I I++ C+ E Q+ +E+ D Q +E + DI
Sbjct: 140 NEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRDFTTKSEKFQEEEFQN-DIEKAID 198
Query: 203 SQNQKTNFTNPEENLLKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDI 260
+ NQ N L FRV+C G T+ E + G + + W DL + +
Sbjct: 199 THNQ---------NDLTFRVSCRCSGTIGKAFTAQEVGKVIGIAIMKHFGWKADLRNPQL 249
Query: 261 DINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLA 307
+I + + + VG+PV + SL R ++ L+ TIA+ M LA
Sbjct: 250 EIFIHLNDIYSVVGIPVFRVSLASRAYIK--TAGLRSTIAWAMASLA 294
>gi|332159158|ref|YP_004424437.1| hypothetical protein PNA2_1518 [Pyrococcus sp. NA2]
gi|331034621|gb|AEC52433.1| hypothetical protein PNA2_1518 [Pyrococcus sp. NA2]
Length = 373
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 35/184 (19%)
Query: 232 VTSMESERAFGG--KLNDTYFWLVDLDDYDIDINLQIRYNEAY------VGLPVTQTSLH 283
V SM SE G ++ D F+ LDD ++ I IR + + + PV ++++
Sbjct: 125 VYSMPSELILKGFPEIKDVVFFF--LDD-NVLIGETIRVVDPFELKKLDIERPVVRSTI- 180
Query: 284 RRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDI 343
++ P +A MV L+ G+V LDP CG GTI +E +L + + DI
Sbjct: 181 ----------SIPPRLARIMVNLSEIRKGNV-LDPFCGTGTILMELTLQGLNAY--GSDI 227
Query: 344 NEKLVLKTQANVLHNSGNLNRELKVS--PL--VCNVRQL--CFKPACVDGIVTDLPFGKR 397
NE+ + +T+ N+ L RE V P+ VC+VR+L CF IVT+ GK
Sbjct: 228 NEERIRETRRNIEW----LKREFNVRKYPVLKVCDVRKLKKCFPRTRFTAIVTEPYMGKP 283
Query: 398 VGSK 401
+ K
Sbjct: 284 LKEK 287
>gi|332813232|ref|XP_003309075.1| PREDICTED: THUMP domain-containing protein 2 isoform 1 [Pan
troglodytes]
Length = 303
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 21/167 (12%)
Query: 150 NDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDL-------QNQELKEIDINSMCS 202
N+I+ K I I++ C+ E Q+ +E+ D Q +E + DI
Sbjct: 140 NEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRDFTTKSEKFQEEEFQN-DIEKAID 198
Query: 203 SQNQKTNFTNPEENLLKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDI 260
+ NQ N L FRV+C G T+ E + G + + W DL + +
Sbjct: 199 THNQ---------NDLTFRVSCRCSGTIGKAFTAQEVGKVIGIAIMKHFGWKADLRNPQL 249
Query: 261 DINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLA 307
+I + + + VG+PV + SL R ++ L+ TIA+ M LA
Sbjct: 250 EIFIHLNDIYSVVGIPVFRVSLASRAYIK--TAGLRSTIAWAMASLA 294
>gi|162454117|ref|YP_001616484.1| N6-adenine DNA/RNA methylase [Sorangium cellulosum So ce56]
gi|161164699|emb|CAN96004.1| putative N6-adenine DNA/RNA methylase [Sorangium cellulosum So
ce56]
Length = 369
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VDLDD D+ + L + + A + + +LHRR LK T+A ++RL+
Sbjct: 129 VDLDDPDLALFLHLVRDRATLYADLGGAALHRRGYRTHIGGAPLKETLAAALLRLSGWDR 188
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GTI +E +L
Sbjct: 189 ARPFVDPMCGAGTIALEAAL 208
>gi|41615225|ref|NP_963723.1| hypothetical protein NEQ440 [Nanoarchaeum equitans Kin4-M]
gi|40068949|gb|AAR39284.1| NEQ440 [Nanoarchaeum equitans Kin4-M]
Length = 295
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCG-DINEKLV 348
F+ +++ PT+A ++ L G ++ DP CG G I +E +L F V G DI+EK++
Sbjct: 128 FHPSSIIPTLAKVLINLTGLKEGTIY-DPFCGIGGILIEAAL---MGFQVKGSDIDEKML 183
Query: 349 LKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLY 408
+ N+L+ +E +++ C+ R LC D IVTD P+G+ N LY
Sbjct: 184 ECAKQNLLYYG---IKEFELAK--CDARDLCLDG---DAIVTDPPYGRYSKVYGNILELY 235
Query: 409 RLFL 412
+ FL
Sbjct: 236 KGFL 239
>gi|366088580|ref|ZP_09455053.1| hypothetical protein LaciK1_00400 [Lactobacillus acidipiscis KCTC
13900]
Length = 261
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 39/193 (20%)
Query: 275 LPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL-- 331
L T SL +R VE LK +A ++ LA P F+DP+CG GT+P+E +L
Sbjct: 33 LDTTGDSLFKRGYRVEKGAAPLKENMAAALILLARWYPEMPFVDPVCGSGTLPIEAALIG 92
Query: 332 --SYPHTF--FVC-------GDINEKLVLKTQANV-------LHNSGNLNRELKVSPLVC 373
P ++ F C +I EKL +K +A +H + + +S L
Sbjct: 93 RNIAPGSWRSFACESWPLFPQEIAEKLRVKAKAAQNKEQQLGIHGYDIDEQMISISRLNA 152
Query: 374 N---------VRQLC---FKPACVDG-IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVR 420
N +QL FK +G IV + P+G R+ + LY+ ++G++ R
Sbjct: 153 NKAGVLHDIEFKQLAVKDFKTTAKNGVIVANPPYGVRLSDQKEAAKLYQ----QMGELYR 208
Query: 421 P-QIGRAILLTSD 432
P + +L+SD
Sbjct: 209 PLKTWSKYILSSD 221
>gi|186681620|ref|YP_001864816.1| RNA methylase [Nostoc punctiforme PCC 73102]
gi|186464072|gb|ACC79873.1| putative RNA methylase [Nostoc punctiforme PCC 73102]
Length = 373
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
V+L + D+ +N+ I + V L + SLHRR LK ++A +++L+
Sbjct: 129 VELHEPDVRVNVHIERDFCTVKLDSSGNSLHRRGYRPAVGSAPLKESLAAALIQLSGWKQ 188
Query: 312 GDVFLDPMCGGGTIPVECSL 331
+F DP+CG GT+P+E SL
Sbjct: 189 DQMFYDPLCGSGTLPLEASL 208
>gi|373462227|ref|ZP_09553957.1| hypothetical protein HMPREF9944_02302 [Prevotella maculosa OT 289]
gi|371949336|gb|EHO67201.1| hypothetical protein HMPREF9944_02302 [Prevotella maculosa OT 289]
Length = 496
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
+ + + DI +N+ I ++A + L + SLHRR + ++ L +A M+ L S
Sbjct: 133 ISVSNPDIRLNIHIAEDKATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMI-LMSGWK 191
Query: 312 GDV-FLDPMCGGGTIPVECSL 331
GD F+DPMCG GTI +E +L
Sbjct: 192 GDTDFIDPMCGSGTILIEAAL 212
>gi|254494871|ref|ZP_01052104.2| putative RNA methylase family UPF0020 [Polaribacter sp. MED152]
gi|213690453|gb|EAQ41532.2| putative RNA methylase family UPF0020 [Polaribacter sp. MED152]
Length = 391
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VDL D+ I++ I+ + V L + SLH+R NI + +A MV L+
Sbjct: 136 VDLKYPDVKIHIHIQKDWLTVSLDSSGDSLHKRGYRTATNIAPINEVLAAGMVLLSGYTG 195
Query: 312 GDVFLDPMCGGGTIPVECSL 331
+ F+DPMCG GTI +E ++
Sbjct: 196 DENFIDPMCGSGTILIEAAM 215
>gi|416825449|ref|ZP_11896600.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O55:H7 str.
USDA 5905]
gi|425247574|ref|ZP_18640769.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
5905]
gi|320659557|gb|EFX27120.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O55:H7 str.
USDA 5905]
gi|408173028|gb|EKI00081.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
5905]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|187734195|ref|YP_001880855.1| 23S rRNA m(2)G2445 methyltransferase [Shigella boydii CDC 3083-94]
gi|238691686|sp|B2TUD1.1|RLMKL_SHIB3 RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|187431187|gb|ACD10461.1| putative RNA methylase family UPF0020 [Shigella boydii CDC 3083-94]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|387132023|ref|YP_006297996.1| RNA methylase, PF01170 family [Prevotella intermedia 17]
gi|386374871|gb|AFJ07850.1| RNA methylase, PF01170 family [Prevotella intermedia 17]
Length = 497
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ + ++A + L + SLHRR + ++ L +A M+ + F+D
Sbjct: 138 DIRLNIHVAEDKATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMILMTGWKGETDFID 197
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+P+E +L
Sbjct: 198 PMCGSGTLPIEAAL 211
>gi|419208106|ref|ZP_13751229.1| 23S rRNA methyltransferase [Escherichia coli DEC8C]
gi|419877859|ref|ZP_14399373.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O111:H11
str. CVM9534]
gi|419882488|ref|ZP_14403709.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O111:H11
str. CVM9545]
gi|420102443|ref|ZP_14613445.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O111:H11
str. CVM9455]
gi|420108635|ref|ZP_14618868.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O111:H11
str. CVM9553]
gi|424756559|ref|ZP_18184371.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O111:H11
str. CFSAN001630]
gi|378061280|gb|EHW23466.1| 23S rRNA methyltransferase [Escherichia coli DEC8C]
gi|388338175|gb|EIL04650.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O111:H11
str. CVM9534]
gi|388361546|gb|EIL25648.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O111:H11
str. CVM9545]
gi|394409306|gb|EJE83853.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O111:H11
str. CVM9553]
gi|394411575|gb|EJE85800.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O111:H11
str. CVM9455]
gi|421949677|gb|EKU06606.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O111:H11
str. CFSAN001630]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|422828778|ref|ZP_16876948.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
B093]
gi|371612339|gb|EHO00851.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
B093]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|20089107|ref|NP_615182.1| N2-methylguanosine tRNA methyltransferase [Methanosarcina
acetivorans C2A]
gi|19913972|gb|AAM03662.1| N2-methylguanosine tRNA methyltransferase [Methanosarcina
acetivorans C2A]
Length = 354
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 11/145 (7%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F+ L P +A + L+ G++FLDP CG I VE L + D EKLVL
Sbjct: 177 FHPGVLMPRVARALTNLSEIKTGELFLDPFCGTAGILVEAGLVGARVIGI--DAQEKLVL 234
Query: 350 KTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNF-LLY 408
N+ EL + + ++ K + ++ +VTD P+G+ + + LY
Sbjct: 235 GAHMNL------EAYELDYLLMEGDACRIPLKDSTINAVVTDPPYGRSAAILAGSLEELY 288
Query: 409 RLFLIEIGKIVRPQIGRAILLTSDR 433
L EI ++++P G ++ SD+
Sbjct: 289 SGALEEIHRVLKP--GGIAVVVSDK 311
>gi|331672477|ref|ZP_08373267.1| putative oxidoreductase [Escherichia coli TA280]
gi|331070383|gb|EGI41748.1| putative oxidoreductase [Escherichia coli TA280]
Length = 705
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|260591016|ref|ZP_05856474.1| putative N6-adenine-specific DNA methylase [Prevotella veroralis
F0319]
gi|260536881|gb|EEX19498.1| putative N6-adenine-specific DNA methylase [Prevotella veroralis
F0319]
Length = 495
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
+ + + DI +N+ I + A + L + SLHRR + ++ L +A M+ +
Sbjct: 132 ISVSNPDIRLNIHIAEDNATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMILMTGWKG 191
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GT+P+E +L
Sbjct: 192 ETDFIDPMCGSGTLPIEAAL 211
>gi|420335222|ref|ZP_14836835.1| ribosomal RNA large subunit methyltransferase L [Shigella flexneri
K-315]
gi|391266197|gb|EIQ25154.1| ribosomal RNA large subunit methyltransferase L [Shigella flexneri
K-315]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|419911795|ref|ZP_14430264.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli KD1]
gi|388393105|gb|EIL54499.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli KD1]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|417161628|ref|ZP_11997864.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
99.0741]
gi|386174164|gb|EIH46165.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
99.0741]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|307311665|ref|ZP_07591305.1| putative RNA methylase [Escherichia coli W]
gi|378713646|ref|YP_005278539.1| rRNA (guanine-N(2)-)-methyltransferase [Escherichia coli KO11FL]
gi|386608316|ref|YP_006123802.1| putative methyltransferase [Escherichia coli W]
gi|386702079|ref|YP_006165916.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli KO11FL]
gi|386708760|ref|YP_006172481.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli W]
gi|306908220|gb|EFN38719.1| putative RNA methylase [Escherichia coli W]
gi|315060233|gb|ADT74560.1| predicted methyltransferase [Escherichia coli W]
gi|323379207|gb|ADX51475.1| rRNA (guanine-N(2)-)-methyltransferase [Escherichia coli KO11FL]
gi|383393606|gb|AFH18564.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli KO11FL]
gi|383404452|gb|AFH10695.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli W]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|432769791|ref|ZP_20004143.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE50]
gi|432960518|ref|ZP_20150638.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE202]
gi|433062189|ref|ZP_20249143.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE125]
gi|431317248|gb|ELG05028.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE50]
gi|431477725|gb|ELH57487.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE202]
gi|431586815|gb|ELI58201.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE125]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|390955557|ref|YP_006419315.1| putative N6-adenine-specific DNA methylase [Aequorivita
sublithincola DSM 14238]
gi|390421543|gb|AFL82300.1| putative N6-adenine-specific DNA methylase [Aequorivita
sublithincola DSM 14238]
Length = 385
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VDLD + IN+ I N + L + SLH+R VE + + +A M+ L+
Sbjct: 133 VDLDHPTLRINVHIDRNICTISLDSSGESLHKRGYKVESTLAPINEVLAAGMLMLSGWQG 192
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCGGGTI E ++
Sbjct: 193 QCNFLDPMCGGGTILTEAAM 212
>gi|422782221|ref|ZP_16835006.1| THUMP domain-containing protein [Escherichia coli TW10509]
gi|323976672|gb|EGB71760.1| THUMP domain-containing protein [Escherichia coli TW10509]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|445049729|ref|ZP_21364880.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
95.0083]
gi|444671678|gb|ELW43464.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
95.0083]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|432453723|ref|ZP_19695959.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE193]
gi|433032455|ref|ZP_20220226.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE112]
gi|430973608|gb|ELC90562.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE193]
gi|431558345|gb|ELI31967.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE112]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|432369005|ref|ZP_19612106.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE10]
gi|430888217|gb|ELC10940.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE10]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|420347602|ref|ZP_14848998.1| ribosomal RNA large subunit methyltransferase L [Shigella boydii
965-58]
gi|391270602|gb|EIQ29490.1| ribosomal RNA large subunit methyltransferase L [Shigella boydii
965-58]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|416896532|ref|ZP_11926379.1| hypothetical protein ECSTEC7V_1165 [Escherichia coli STEC_7v]
gi|417118707|ref|ZP_11969225.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
1.2741]
gi|422800312|ref|ZP_16848810.1| THUMP domain-containing protein [Escherichia coli M863]
gi|422806003|ref|ZP_16854435.1| THUMP domain-containing protein [Escherichia fergusonii B253]
gi|323967195|gb|EGB62619.1| THUMP domain-containing protein [Escherichia coli M863]
gi|324113728|gb|EGC07703.1| THUMP domain-containing protein [Escherichia fergusonii B253]
gi|327253740|gb|EGE65369.1| hypothetical protein ECSTEC7V_1165 [Escherichia coli STEC_7v]
gi|386138241|gb|EIG79401.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
1.2741]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|416280164|ref|ZP_11645186.1| putative RNA methylase family UPF0020 [Shigella boydii ATCC 9905]
gi|320181982|gb|EFW56887.1| putative RNA methylase family UPF0020 [Shigella boydii ATCC 9905]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|300819191|ref|ZP_07099392.1| THUMP domain protein [Escherichia coli MS 107-1]
gi|432805074|ref|ZP_20039015.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE91]
gi|432933513|ref|ZP_20133181.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE184]
gi|433192941|ref|ZP_20376952.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE90]
gi|300528210|gb|EFK49272.1| THUMP domain protein [Escherichia coli MS 107-1]
gi|431356686|gb|ELG43376.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE91]
gi|431455155|gb|ELH35511.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE184]
gi|431719824|gb|ELJ83874.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE90]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|251784490|ref|YP_002998794.1| 23S rRNA m[2]G2445 methyltransferase [Escherichia coli BL21(DE3)]
gi|253774023|ref|YP_003036854.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254161062|ref|YP_003044170.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli B str.
REL606]
gi|254287870|ref|YP_003053618.1| methyltransferase [Escherichia coli BL21(DE3)]
gi|242376763|emb|CAQ31476.1| 23S rRNA m[2]G2445 methyltransferase [Escherichia coli BL21(DE3)]
gi|253325067|gb|ACT29669.1| putative RNA methylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253972963|gb|ACT38634.1| predicted methyltransferase [Escherichia coli B str. REL606]
gi|253977177|gb|ACT42847.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|218704371|ref|YP_002411890.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli UMN026]
gi|293404247|ref|ZP_06648241.1| rlmL [Escherichia coli FVEC1412]
gi|300896327|ref|ZP_07114870.1| THUMP domain protein [Escherichia coli MS 198-1]
gi|417585884|ref|ZP_12236657.1| hypothetical protein ECSTECC16502_1506 [Escherichia coli
STEC_C165-02]
gi|419936103|ref|ZP_14453134.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli 576-1]
gi|432352907|ref|ZP_19596190.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE2]
gi|432401140|ref|ZP_19643894.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE26]
gi|432425197|ref|ZP_19667712.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE181]
gi|432459969|ref|ZP_19702125.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE204]
gi|432475059|ref|ZP_19717065.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE208]
gi|432488591|ref|ZP_19730475.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE213]
gi|432537004|ref|ZP_19773921.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE235]
gi|432630565|ref|ZP_19866509.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE80]
gi|432640167|ref|ZP_19876006.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE83]
gi|432665236|ref|ZP_19900820.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE116]
gi|432774142|ref|ZP_20008426.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE54]
gi|432838608|ref|ZP_20072097.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE140]
gi|432885434|ref|ZP_20099955.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE158]
gi|432911510|ref|ZP_20117785.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE190]
gi|433017921|ref|ZP_20206179.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE105]
gi|433052322|ref|ZP_20239545.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE122]
gi|433067202|ref|ZP_20254024.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE128]
gi|433157932|ref|ZP_20342794.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE177]
gi|433177487|ref|ZP_20361933.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE82]
gi|433202490|ref|ZP_20386286.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE95]
gi|218431468|emb|CAR12346.1| putative conserved AdoMet-dependent methyltransferase with RNA
interaction domain [Escherichia coli UMN026]
gi|291428833|gb|EFF01858.1| rlmL [Escherichia coli FVEC1412]
gi|300359792|gb|EFJ75662.1| THUMP domain protein [Escherichia coli MS 198-1]
gi|345339040|gb|EGW71466.1| hypothetical protein ECSTECC16502_1506 [Escherichia coli
STEC_C165-02]
gi|388401999|gb|EIL62597.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli 576-1]
gi|430877381|gb|ELC00832.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE2]
gi|430927738|gb|ELC48301.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE26]
gi|430958431|gb|ELC77025.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE181]
gi|430990627|gb|ELD07048.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE204]
gi|431008093|gb|ELD22900.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE208]
gi|431022789|gb|ELD36049.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE213]
gi|431072581|gb|ELD80332.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE235]
gi|431173600|gb|ELE73676.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE80]
gi|431184027|gb|ELE83793.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE83]
gi|431202871|gb|ELF01548.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE116]
gi|431319487|gb|ELG07157.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE54]
gi|431391074|gb|ELG74722.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE140]
gi|431418480|gb|ELH00875.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE158]
gi|431443217|gb|ELH24294.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE190]
gi|431535488|gb|ELI11829.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE105]
gi|431574638|gb|ELI47405.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE122]
gi|431589151|gb|ELI60367.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE128]
gi|431680803|gb|ELJ46620.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE177]
gi|431708813|gb|ELJ73317.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE82]
gi|431724879|gb|ELJ88793.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE95]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|170683350|ref|YP_001744221.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli SMS-3-5]
gi|238688762|sp|B1LJR4.1|RLMKL_ECOSM RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|170521068|gb|ACB19246.1| putative RNA methylase family UPF0020 [Escherichia coli SMS-3-5]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|422332235|ref|ZP_16413249.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
4_1_47FAA]
gi|373246784|gb|EHP66234.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
4_1_47FAA]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|417671675|ref|ZP_12321163.1| hypothetical protein SD15574_1293 [Shigella dysenteriae 155-74]
gi|332095880|gb|EGJ00887.1| hypothetical protein SD15574_1293 [Shigella dysenteriae 155-74]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|300937703|ref|ZP_07152505.1| THUMP domain protein [Escherichia coli MS 21-1]
gi|432679440|ref|ZP_19914834.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE143]
gi|300457264|gb|EFK20757.1| THUMP domain protein [Escherichia coli MS 21-1]
gi|431223632|gb|ELF20878.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE143]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|222155667|ref|YP_002555806.1| hypothetical protein LF82_1894 [Escherichia coli LF82]
gi|222032672|emb|CAP75411.1| UPF0020/UPF0064 protein ycbY [Escherichia coli LF82]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|218548457|ref|YP_002382248.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia fergusonii ATCC
35469]
gi|218355998|emb|CAQ88614.1| putative conserved AdoMet-dependent methyltransferase with RNA
interaction domain [Escherichia fergusonii ATCC 35469]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|15800807|ref|NP_286823.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H7 str.
EDL933]
gi|15830286|ref|NP_309059.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H7 str.
Sakai]
gi|168762913|ref|ZP_02787920.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC4501]
gi|168776197|ref|ZP_02801204.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC4196]
gi|168783959|ref|ZP_02808966.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC4076]
gi|168787379|ref|ZP_02812386.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC869]
gi|168802930|ref|ZP_02827937.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC508]
gi|195939638|ref|ZP_03085020.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H7 str.
EC4024]
gi|208809391|ref|ZP_03251728.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC4206]
gi|208816186|ref|ZP_03257365.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC4045]
gi|209398993|ref|YP_002269617.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H7 str.
EC4115]
gi|217324956|ref|ZP_03441040.1| UPF0020, RNA methylase family [Escherichia coli O157:H7 str.
TW14588]
gi|254792148|ref|YP_003076985.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H7 str.
TW14359]
gi|261227451|ref|ZP_05941732.1| 23S rRNA m2G2445 methyltransferase [Escherichia coli O157:H7 str.
FRIK2000]
gi|261256126|ref|ZP_05948659.1| 23S rRNA m2G2445 methyltransferase [Escherichia coli O157:H7 str.
FRIK966]
gi|291281948|ref|YP_003498766.1| RNA methylase family UPF0020 [Escherichia coli O55:H7 str. CB9615]
gi|387506059|ref|YP_006158315.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O55:H7 str.
RM12579]
gi|387881559|ref|YP_006311861.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli Xuzhou21]
gi|416309389|ref|ZP_11655761.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. 1044]
gi|416317267|ref|ZP_11660308.1| 23S rRNA methyltransferase [Escherichia coli O157:H7 str. EC1212]
gi|416332027|ref|ZP_11670106.1| putative RNA methylase [Escherichia coli O157:H7 str. 1125]
gi|416782055|ref|ZP_11877524.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H7 str.
G5101]
gi|416793287|ref|ZP_11882448.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H- str.
493-89]
gi|416804553|ref|ZP_11887308.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H- str.
H 2687]
gi|416815676|ref|ZP_11892014.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O55:H7 str.
3256-97]
gi|416836255|ref|ZP_11901870.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H7 str.
LSU-61]
gi|419044068|ref|ZP_13591039.1| 23S rRNA methyltransferase [Escherichia coli DEC3A]
gi|419049606|ref|ZP_13596522.1| 23S rRNA methyltransferase [Escherichia coli DEC3B]
gi|419055687|ref|ZP_13602540.1| 23S rRNA methyltransferase [Escherichia coli DEC3C]
gi|419061258|ref|ZP_13608037.1| 23S rRNA methyltransferase [Escherichia coli DEC3D]
gi|419067532|ref|ZP_13613945.1| 23S rRNA methyltransferase [Escherichia coli DEC3E]
gi|419073963|ref|ZP_13619531.1| 23S rRNA methyltransferase [Escherichia coli DEC3F]
gi|419079367|ref|ZP_13624849.1| 23S rRNA methyltransferase [Escherichia coli DEC4A]
gi|419085005|ref|ZP_13630414.1| 23S rRNA methyltransferase [Escherichia coli DEC4B]
gi|419090866|ref|ZP_13636183.1| 23S rRNA methyltransferase [Escherichia coli DEC4C]
gi|419096903|ref|ZP_13642145.1| 23S rRNA methyltransferase [Escherichia coli DEC4D]
gi|419102744|ref|ZP_13647909.1| 23S rRNA methyltransferase [Escherichia coli DEC4E]
gi|419108248|ref|ZP_13653354.1| 23S rRNA methyltransferase [Escherichia coli DEC4F]
gi|419113875|ref|ZP_13658905.1| 23S rRNA methyltransferase [Escherichia coli DEC5A]
gi|419119512|ref|ZP_13664490.1| 23S rRNA methyltransferase [Escherichia coli DEC5B]
gi|419125260|ref|ZP_13670156.1| 23S rRNA methyltransferase [Escherichia coli DEC5C]
gi|419130758|ref|ZP_13675605.1| 23S rRNA methyltransferase [Escherichia coli DEC5D]
gi|419135490|ref|ZP_13680296.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC5E]
gi|420268181|ref|ZP_14770585.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA22]
gi|420274050|ref|ZP_14776381.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA40]
gi|420279389|ref|ZP_14781654.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW06591]
gi|420285356|ref|ZP_14787571.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW10246]
gi|420291166|ref|ZP_14793329.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW11039]
gi|420296960|ref|ZP_14799052.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW09109]
gi|420302903|ref|ZP_14804929.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW10119]
gi|420308353|ref|ZP_14810324.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1738]
gi|420313828|ref|ZP_14815733.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1734]
gi|421812977|ref|ZP_16248701.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
8.0416]
gi|421817313|ref|ZP_16252867.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
10.0821]
gi|421822717|ref|ZP_16258153.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FRIK920]
gi|421829454|ref|ZP_16264781.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA7]
gi|423665478|ref|ZP_17640616.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA31]
gi|424075904|ref|ZP_17813242.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FDA505]
gi|424082252|ref|ZP_17819103.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FDA517]
gi|424088898|ref|ZP_17825143.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FRIK1996]
gi|424095106|ref|ZP_17830848.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FRIK1985]
gi|424101546|ref|ZP_17836688.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FRIK1990]
gi|424108297|ref|ZP_17842862.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
93-001]
gi|424116394|ref|ZP_17850258.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA3]
gi|424120359|ref|ZP_17854049.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA5]
gi|424126587|ref|ZP_17859782.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA9]
gi|424132693|ref|ZP_17865484.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA10]
gi|424139237|ref|ZP_17871521.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA14]
gi|424145677|ref|ZP_17877436.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA15]
gi|424151813|ref|ZP_17883057.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA24]
gi|424190301|ref|ZP_17888494.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA25]
gi|424271870|ref|ZP_17894401.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA28]
gi|424426080|ref|ZP_17900129.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA32]
gi|424454227|ref|ZP_17905750.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA33]
gi|424460559|ref|ZP_17911463.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA39]
gi|424467010|ref|ZP_17917188.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA41]
gi|424473570|ref|ZP_17923229.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA42]
gi|424479499|ref|ZP_17928738.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW07945]
gi|424485574|ref|ZP_17934427.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW09098]
gi|424491781|ref|ZP_17940101.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW09195]
gi|424498789|ref|ZP_17946051.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC4203]
gi|424504957|ref|ZP_17951717.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC4196]
gi|424511287|ref|ZP_17957491.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW14313]
gi|424518809|ref|ZP_17963233.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW14301]
gi|424524669|ref|ZP_17968682.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC4421]
gi|424530875|ref|ZP_17974490.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC4422]
gi|424536848|ref|ZP_17980098.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC4013]
gi|424542783|ref|ZP_17985576.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC4402]
gi|424549088|ref|ZP_17991276.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC4439]
gi|424555334|ref|ZP_17997046.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC4436]
gi|424561689|ref|ZP_18002969.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC4437]
gi|424567730|ref|ZP_18008632.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC4448]
gi|424573912|ref|ZP_18014321.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1845]
gi|424579859|ref|ZP_18019780.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1863]
gi|425096534|ref|ZP_18499546.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
3.4870]
gi|425102679|ref|ZP_18505317.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
5.2239]
gi|425108479|ref|ZP_18510717.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
6.0172]
gi|425124257|ref|ZP_18525814.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
8.0586]
gi|425130344|ref|ZP_18531433.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
8.2524]
gi|425136709|ref|ZP_18537423.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
10.0833]
gi|425142549|ref|ZP_18542836.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
10.0869]
gi|425148899|ref|ZP_18548775.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
88.0221]
gi|425154502|ref|ZP_18554044.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA34]
gi|425160951|ref|ZP_18560121.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FDA506]
gi|425166478|ref|ZP_18565279.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FDA507]
gi|425172765|ref|ZP_18571153.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FDA504]
gi|425178654|ref|ZP_18576694.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FRIK1999]
gi|425184813|ref|ZP_18582425.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FRIK1997]
gi|425191618|ref|ZP_18588733.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
NE1487]
gi|425197900|ref|ZP_18594541.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
NE037]
gi|425204576|ref|ZP_18600696.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FRIK2001]
gi|425210285|ref|ZP_18606011.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA4]
gi|425216339|ref|ZP_18611644.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA23]
gi|425222920|ref|ZP_18617761.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA49]
gi|425229145|ref|ZP_18623528.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA45]
gi|425235451|ref|ZP_18629404.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TT12B]
gi|425241467|ref|ZP_18635094.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
MA6]
gi|425253330|ref|ZP_18646188.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
CB7326]
gi|425259584|ref|ZP_18651943.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC96038]
gi|425265789|ref|ZP_18657690.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
5412]
gi|425293172|ref|ZP_18683735.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA38]
gi|425309899|ref|ZP_18699353.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1735]
gi|425315823|ref|ZP_18704885.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1736]
gi|425321894|ref|ZP_18710549.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1737]
gi|425328084|ref|ZP_18716288.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1846]
gi|425334268|ref|ZP_18721968.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1847]
gi|425340680|ref|ZP_18727905.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1848]
gi|425346545|ref|ZP_18733336.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1849]
gi|425352781|ref|ZP_18739145.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1850]
gi|425358770|ref|ZP_18744727.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1856]
gi|425364889|ref|ZP_18750411.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1862]
gi|425371332|ref|ZP_18756278.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1864]
gi|425384124|ref|ZP_18767986.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1866]
gi|425390816|ref|ZP_18774255.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1868]
gi|425396932|ref|ZP_18779961.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1869]
gi|425402920|ref|ZP_18785510.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1870]
gi|425409471|ref|ZP_18791608.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
NE098]
gi|425426873|ref|ZP_18807912.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
0.1304]
gi|428945574|ref|ZP_19018184.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
88.1467]
gi|428951704|ref|ZP_19023809.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
88.1042]
gi|428957566|ref|ZP_19029232.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
89.0511]
gi|428963907|ref|ZP_19035068.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
90.0091]
gi|428969977|ref|ZP_19040590.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
90.0039]
gi|428976484|ref|ZP_19046636.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
90.2281]
gi|428982226|ref|ZP_19051943.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
93.0055]
gi|428988495|ref|ZP_19057762.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
93.0056]
gi|428994297|ref|ZP_19063188.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
94.0618]
gi|429000438|ref|ZP_19068922.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
95.0183]
gi|429006626|ref|ZP_19074509.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
95.1288]
gi|429012955|ref|ZP_19080189.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
95.0943]
gi|429019182|ref|ZP_19085946.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
96.0428]
gi|429024876|ref|ZP_19091265.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
96.0427]
gi|429033327|ref|ZP_19098869.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
96.0939]
gi|429039426|ref|ZP_19104560.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
96.0932]
gi|429043343|ref|ZP_19108321.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
96.0107]
gi|429049059|ref|ZP_19113710.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
97.0003]
gi|429053258|ref|ZP_19117792.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
97.1742]
gi|429060105|ref|ZP_19124232.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
97.0007]
gi|429072125|ref|ZP_19135471.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.0678]
gi|429077453|ref|ZP_19140660.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.0713]
gi|429824698|ref|ZP_19356167.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
96.0109]
gi|429831059|ref|ZP_19361866.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
97.0010]
gi|444923402|ref|ZP_21243079.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
09BKT078844]
gi|444929692|ref|ZP_21248830.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.0814]
gi|444934909|ref|ZP_21253834.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.0815]
gi|444940507|ref|ZP_21259141.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.0816]
gi|444946179|ref|ZP_21264587.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.0839]
gi|444951727|ref|ZP_21269937.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.0848]
gi|444957194|ref|ZP_21275177.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.1753]
gi|444962499|ref|ZP_21280232.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.1775]
gi|444973701|ref|ZP_21290967.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.1805]
gi|444979375|ref|ZP_21296359.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
ATCC 700728]
gi|444984537|ref|ZP_21301396.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA11]
gi|444989784|ref|ZP_21306514.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA19]
gi|444996720|ref|ZP_21313231.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA13]
gi|445000662|ref|ZP_21317115.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA2]
gi|445006101|ref|ZP_21322430.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA47]
gi|445011212|ref|ZP_21327396.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA48]
gi|445018685|ref|ZP_21334661.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA8]
gi|445022480|ref|ZP_21338394.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
7.1982]
gi|445027750|ref|ZP_21343514.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.1781]
gi|445033241|ref|ZP_21348852.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.1762]
gi|445038928|ref|ZP_21354389.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA35]
gi|445055386|ref|ZP_21370325.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.0670]
gi|452967468|ref|ZP_21965695.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H7 str.
EC4009]
gi|81849038|sp|Q8XDB2.1|RLMKL_ECO57 RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|238056566|sp|B5YT79.1|RLMKL_ECO5E RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|12514130|gb|AAG55434.1|AE005285_1 putative oxidoreductase [Escherichia coli O157:H7 str. EDL933]
gi|13360492|dbj|BAB34455.1| putative oxidoreductase [Escherichia coli O157:H7 str. Sakai]
gi|187768361|gb|EDU32205.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC4196]
gi|188998771|gb|EDU67757.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC4076]
gi|189366794|gb|EDU85210.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC4501]
gi|189372718|gb|EDU91134.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC869]
gi|189375248|gb|EDU93664.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC508]
gi|208729192|gb|EDZ78793.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC4206]
gi|208732834|gb|EDZ81522.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC4045]
gi|209160393|gb|ACI37826.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. EC4115]
gi|209774528|gb|ACI85576.1| putative oxidoreductase [Escherichia coli]
gi|209774530|gb|ACI85577.1| putative oxidoreductase [Escherichia coli]
gi|209774532|gb|ACI85578.1| putative oxidoreductase [Escherichia coli]
gi|209774534|gb|ACI85579.1| putative oxidoreductase [Escherichia coli]
gi|209774536|gb|ACI85580.1| putative oxidoreductase [Escherichia coli]
gi|217321177|gb|EEC29601.1| UPF0020, RNA methylase family [Escherichia coli O157:H7 str.
TW14588]
gi|254591548|gb|ACT70909.1| 23S rRNA m2G2445 methyltransferase [Escherichia coli O157:H7 str.
TW14359]
gi|290761821|gb|ADD55782.1| Putative RNA methylase family UPF0020 [Escherichia coli O55:H7 str.
CB9615]
gi|320192563|gb|EFW67204.1| 23S rRNA methyltransferase [Escherichia coli O157:H7 str. EC1212]
gi|320637816|gb|EFX07608.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H7 str.
G5101]
gi|320642941|gb|EFX12142.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H- str.
493-89]
gi|320648398|gb|EFX17053.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H- str.
H 2687]
gi|320653714|gb|EFX21788.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320664328|gb|EFX31479.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H7 str.
LSU-61]
gi|326338155|gb|EGD61984.1| putative RNA methylase [Escherichia coli O157:H7 str. 1125]
gi|326346132|gb|EGD69870.1| putative RNA methylase family UPF0020 [Escherichia coli O157:H7
str. 1044]
gi|374358053|gb|AEZ39760.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O55:H7 str.
RM12579]
gi|377899687|gb|EHU64033.1| 23S rRNA methyltransferase [Escherichia coli DEC3A]
gi|377901668|gb|EHU65984.1| 23S rRNA methyltransferase [Escherichia coli DEC3B]
gi|377913279|gb|EHU77423.1| 23S rRNA methyltransferase [Escherichia coli DEC3C]
gi|377917344|gb|EHU81409.1| 23S rRNA methyltransferase [Escherichia coli DEC3D]
gi|377918968|gb|EHU83012.1| 23S rRNA methyltransferase [Escherichia coli DEC3E]
gi|377930939|gb|EHU94809.1| 23S rRNA methyltransferase [Escherichia coli DEC3F]
gi|377933474|gb|EHU97319.1| 23S rRNA methyltransferase [Escherichia coli DEC4A]
gi|377938377|gb|EHV02145.1| 23S rRNA methyltransferase [Escherichia coli DEC4B]
gi|377949025|gb|EHV12665.1| 23S rRNA methyltransferase [Escherichia coli DEC4C]
gi|377950341|gb|EHV13969.1| 23S rRNA methyltransferase [Escherichia coli DEC4D]
gi|377953912|gb|EHV17476.1| 23S rRNA methyltransferase [Escherichia coli DEC4E]
gi|377964575|gb|EHV28010.1| 23S rRNA methyltransferase [Escherichia coli DEC5A]
gi|377965390|gb|EHV28810.1| 23S rRNA methyltransferase [Escherichia coli DEC4F]
gi|377971155|gb|EHV34512.1| 23S rRNA methyltransferase [Escherichia coli DEC5B]
gi|377978055|gb|EHV41335.1| 23S rRNA methyltransferase [Escherichia coli DEC5C]
gi|377979329|gb|EHV42606.1| 23S rRNA methyltransferase [Escherichia coli DEC5D]
gi|377986639|gb|EHV49829.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC5E]
gi|386795017|gb|AFJ28051.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli Xuzhou21]
gi|390649754|gb|EIN28234.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FRIK1996]
gi|390651858|gb|EIN30128.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FDA517]
gi|390652173|gb|EIN30408.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FDA505]
gi|390668981|gb|EIN45696.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
93-001]
gi|390671732|gb|EIN48116.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FRIK1990]
gi|390672175|gb|EIN48491.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FRIK1985]
gi|390677826|gb|EIN53826.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA3]
gi|390690851|gb|EIN65637.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA9]
gi|390691171|gb|EIN65933.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA5]
gi|390707452|gb|EIN80802.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA10]
gi|390709158|gb|EIN82275.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA15]
gi|390710229|gb|EIN83252.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA14]
gi|390719488|gb|EIN92213.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA22]
gi|390732380|gb|EIO04066.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA24]
gi|390732446|gb|EIO04131.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA25]
gi|390735435|gb|EIO06829.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA28]
gi|390750829|gb|EIO20820.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA31]
gi|390751149|gb|EIO21081.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA32]
gi|390753942|gb|EIO23581.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA33]
gi|390761807|gb|EIO31083.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA40]
gi|390775198|gb|EIO43272.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA41]
gi|390776765|gb|EIO44653.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA42]
gi|390779971|gb|EIO47674.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA39]
gi|390785099|gb|EIO52655.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW06591]
gi|390794219|gb|EIO61518.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW10246]
gi|390801197|gb|EIO68263.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW11039]
gi|390808202|gb|EIO75048.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW07945]
gi|390811198|gb|EIO77922.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW09109]
gi|390818728|gb|EIO85097.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW10119]
gi|390821435|gb|EIO87625.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW09098]
gi|390836284|gb|EIP00837.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC4203]
gi|390838819|gb|EIP03002.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC4196]
gi|390839110|gb|EIP03263.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW09195]
gi|390854870|gb|EIP17647.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW14301]
gi|390857231|gb|EIP19687.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW14313]
gi|390857782|gb|EIP20208.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC4421]
gi|390870678|gb|EIP32179.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC4422]
gi|390875120|gb|EIP36202.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC4013]
gi|390884516|gb|EIP44812.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC4402]
gi|390887085|gb|EIP47080.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC4439]
gi|390892794|gb|EIP52365.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC4436]
gi|390903256|gb|EIP62311.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1738]
gi|390908388|gb|EIP67211.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC4437]
gi|390911322|gb|EIP70027.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1734]
gi|390913233|gb|EIP71829.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC4448]
gi|390924273|gb|EIP82075.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1863]
gi|390925680|gb|EIP83314.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1845]
gi|408071781|gb|EKH06116.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA7]
gi|408075333|gb|EKH09569.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FRIK920]
gi|408085553|gb|EKH19177.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA34]
gi|408088952|gb|EKH22289.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FDA506]
gi|408094185|gb|EKH27230.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FDA507]
gi|408100840|gb|EKH33315.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FDA504]
gi|408109074|gb|EKH41009.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FRIK1999]
gi|408115600|gb|EKH46979.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FRIK1997]
gi|408120712|gb|EKH51687.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
NE1487]
gi|408128976|gb|EKH59225.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
NE037]
gi|408131172|gb|EKH61233.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FRIK2001]
gi|408140151|gb|EKH69686.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA4]
gi|408149606|gb|EKH78284.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA23]
gi|408151107|gb|EKH79620.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA49]
gi|408156611|gb|EKH84813.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA45]
gi|408166090|gb|EKH93716.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TT12B]
gi|408170680|gb|EKH97840.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
MA6]
gi|408186075|gb|EKI12189.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
CB7326]
gi|408190072|gb|EKI15748.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
5412]
gi|408190619|gb|EKI16264.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC96038]
gi|408231448|gb|EKI54717.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA38]
gi|408237501|gb|EKI60356.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1735]
gi|408248202|gb|EKI70262.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1736]
gi|408251867|gb|EKI73580.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1737]
gi|408258228|gb|EKI79511.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1846]
gi|408267169|gb|EKI87638.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1847]
gi|408268845|gb|EKI89174.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1848]
gi|408278347|gb|EKI98109.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1849]
gi|408284147|gb|EKJ03276.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1850]
gi|408286795|gb|EKJ05714.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1856]
gi|408299117|gb|EKJ16951.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1862]
gi|408299716|gb|EKJ17487.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1864]
gi|408315355|gb|EKJ31674.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1868]
gi|408315797|gb|EKJ32098.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1866]
gi|408330619|gb|EKJ45882.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1869]
gi|408335240|gb|EKJ50091.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
NE098]
gi|408336788|gb|EKJ51537.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1870]
gi|408352761|gb|EKJ66305.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
0.1304]
gi|408557620|gb|EKK34052.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
5.2239]
gi|408557894|gb|EKK34316.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
3.4870]
gi|408558597|gb|EKK34961.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
6.0172]
gi|408584472|gb|EKK59478.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
8.0586]
gi|408588734|gb|EKK63306.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
8.2524]
gi|408589737|gb|EKK64239.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
10.0833]
gi|408601283|gb|EKK75086.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
8.0416]
gi|408603553|gb|EKK77194.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
10.0869]
gi|408606490|gb|EKK79920.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
88.0221]
gi|408616252|gb|EKK89411.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
10.0821]
gi|427213448|gb|EKV82857.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
88.1042]
gi|427215214|gb|EKV84401.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
88.1467]
gi|427215308|gb|EKV84494.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
89.0511]
gi|427232730|gb|EKW00541.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
90.2281]
gi|427233110|gb|EKW00896.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
90.0039]
gi|427234793|gb|EKW02470.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
90.0091]
gi|427250549|gb|EKW17220.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
93.0056]
gi|427252110|gb|EKW18632.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
93.0055]
gi|427253409|gb|EKW19851.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
94.0618]
gi|427269330|gb|EKW34296.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
95.0183]
gi|427269369|gb|EKW34334.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
95.0943]
gi|427273468|gb|EKW38150.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
95.1288]
gi|427283289|gb|EKW47497.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
96.0939]
gi|427285603|gb|EKW49550.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
96.0428]
gi|427291048|gb|EKW54498.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
96.0427]
gi|427292373|gb|EKW55725.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
96.0932]
gi|427304182|gb|EKW66852.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
97.0003]
gi|427309181|gb|EKW71506.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
96.0107]
gi|427321080|gb|EKW82791.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
97.0007]
gi|427323437|gb|EKW85003.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
97.1742]
gi|427333107|gb|EKW94221.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.0713]
gi|427333556|gb|EKW94661.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.0678]
gi|429259216|gb|EKY42922.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
96.0109]
gi|429261239|gb|EKY44691.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
97.0010]
gi|444541702|gb|ELV21153.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.0814]
gi|444549390|gb|ELV27640.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
09BKT078844]
gi|444551172|gb|ELV29148.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.0815]
gi|444563929|gb|ELV40904.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.0839]
gi|444565784|gb|ELV42628.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.0816]
gi|444569834|gb|ELV46391.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.0848]
gi|444580779|gb|ELV56670.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.1753]
gi|444584019|gb|ELV59697.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.1775]
gi|444598551|gb|ELV73470.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
ATCC 700728]
gi|444599083|gb|ELV73982.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA11]
gi|444606469|gb|ELV81085.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.1805]
gi|444607276|gb|ELV81854.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA13]
gi|444613079|gb|ELV87343.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA19]
gi|444621631|gb|ELV95606.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA2]
gi|444630081|gb|ELW03746.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA8]
gi|444631129|gb|ELW04735.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA47]
gi|444631353|gb|ELW04957.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA48]
gi|444646763|gb|ELW19765.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
7.1982]
gi|444648546|gb|ELW21464.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.1781]
gi|444652249|gb|ELW25017.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.1762]
gi|444661618|gb|ELW33914.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
PA35]
gi|444673924|gb|ELW45520.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.0670]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|433129302|ref|ZP_20314768.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE163]
gi|431650585|gb|ELJ17903.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE163]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|432390981|ref|ZP_19633839.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE21]
gi|430921599|gb|ELC42423.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE21]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|427804104|ref|ZP_18971171.1| putative oxidoreductase [Escherichia coli chi7122]
gi|427808686|ref|ZP_18975751.1| putative oxidoreductase [Escherichia coli]
gi|443617065|ref|YP_007380921.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli APEC O78]
gi|412962286|emb|CCK46200.1| putative oxidoreductase [Escherichia coli chi7122]
gi|412968865|emb|CCJ43491.1| putative oxidoreductase [Escherichia coli]
gi|443421573|gb|AGC86477.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli APEC O78]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|417229380|ref|ZP_12030966.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
5.0959]
gi|386205870|gb|EII10376.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
5.0959]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|331657013|ref|ZP_08357975.1| putative oxidoreductase [Escherichia coli TA206]
gi|422371993|ref|ZP_16452361.1| THUMP domain protein [Escherichia coli MS 16-3]
gi|432897868|ref|ZP_20108699.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE192]
gi|433027966|ref|ZP_20215835.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE109]
gi|315296242|gb|EFU55549.1| THUMP domain protein [Escherichia coli MS 16-3]
gi|331055261|gb|EGI27270.1| putative oxidoreductase [Escherichia coli TA206]
gi|431428595|gb|ELH10536.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE192]
gi|431544962|gb|ELI19772.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE109]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|193064614|ref|ZP_03045693.1| putative RNA methylase family UPF0020 [Escherichia coli E22]
gi|192927671|gb|EDV82286.1| putative RNA methylase family UPF0020 [Escherichia coli E22]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|110641137|ref|YP_668867.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli 536]
gi|191172055|ref|ZP_03033599.1| putative RNA methylase family UPF0020 [Escherichia coli F11]
gi|300983000|ref|ZP_07176404.1| THUMP domain protein [Escherichia coli MS 200-1]
gi|417288957|ref|ZP_12076242.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
TW07793]
gi|419699798|ref|ZP_14227410.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli SCI-07]
gi|422375760|ref|ZP_16456023.1| THUMP domain protein [Escherichia coli MS 60-1]
gi|422378869|ref|ZP_16459072.1| THUMP domain protein [Escherichia coli MS 57-2]
gi|432470305|ref|ZP_19712357.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE206]
gi|432712595|ref|ZP_19947644.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE8]
gi|432731654|ref|ZP_19966490.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE45]
gi|432758732|ref|ZP_19993232.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE46]
gi|433077097|ref|ZP_20263658.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE131]
gi|122958441|sp|Q0TJB3.1|RLMKL_ECOL5 RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|110342729|gb|ABG68966.1| hypothetical protein YcbY [Escherichia coli 536]
gi|190907582|gb|EDV67177.1| putative RNA methylase family UPF0020 [Escherichia coli F11]
gi|300307017|gb|EFJ61537.1| THUMP domain protein [Escherichia coli MS 200-1]
gi|324009878|gb|EGB79097.1| THUMP domain protein [Escherichia coli MS 57-2]
gi|324012930|gb|EGB82149.1| THUMP domain protein [Escherichia coli MS 60-1]
gi|380348904|gb|EIA37180.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli SCI-07]
gi|386247749|gb|EII93922.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
TW07793]
gi|430999483|gb|ELD15565.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE206]
gi|431258728|gb|ELF51491.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE8]
gi|431277909|gb|ELF68913.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE45]
gi|431310671|gb|ELF98852.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE46]
gi|431600057|gb|ELI69734.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE131]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|16128915|ref|NP_415468.1| 23S rRNA mG2445 methyltransferase, SAM-dependent [Escherichia coli
str. K-12 substr. MG1655]
gi|157160469|ref|YP_001457787.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli HS]
gi|170020651|ref|YP_001725605.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli ATCC 8739]
gi|170080606|ref|YP_001729926.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli str. K-12
substr. DH10B]
gi|188492332|ref|ZP_02999602.1| putative methyltransferase [Escherichia coli 53638]
gi|194440185|ref|ZP_03072229.1| putative RNA methylase family UPF0020 [Escherichia coli 101-1]
gi|238900206|ref|YP_002926002.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli BW2952]
gi|300929647|ref|ZP_07145108.1| THUMP domain protein [Escherichia coli MS 187-1]
gi|300955398|ref|ZP_07167774.1| THUMP domain protein [Escherichia coli MS 175-1]
gi|301022470|ref|ZP_07186349.1| THUMP domain protein [Escherichia coli MS 196-1]
gi|301643471|ref|ZP_07243519.1| THUMP domain protein [Escherichia coli MS 146-1]
gi|312971081|ref|ZP_07785260.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|386280064|ref|ZP_10057734.1| ribosomal RNA large subunit methyltransferase L [Escherichia sp.
4_1_40B]
gi|386596217|ref|YP_006092617.1| putative RNA methylase [Escherichia coli DH1]
gi|386704128|ref|YP_006167975.1| hypothetical protein P12B_c0935 [Escherichia coli P12b]
gi|387611491|ref|YP_006114607.1| putative RNA methylase [Escherichia coli ETEC H10407]
gi|387620673|ref|YP_006128300.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli DH1]
gi|388477032|ref|YP_489220.1| methyltransferase [Escherichia coli str. K-12 substr. W3110]
gi|404374275|ref|ZP_10979493.1| ribosomal RNA large subunit methyltransferase L [Escherichia sp.
1_1_43]
gi|415773319|ref|ZP_11485951.1| conserved hypothetical protein [Escherichia coli 3431]
gi|417261624|ref|ZP_12049112.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
2.3916]
gi|417274534|ref|ZP_12061874.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
2.4168]
gi|417276337|ref|ZP_12063667.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
3.2303]
gi|417289592|ref|ZP_12076875.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
B41]
gi|417612050|ref|ZP_12262522.1| hypothetical protein ECSTECEH250_1103 [Escherichia coli STEC_EH250]
gi|417617413|ref|ZP_12267843.1| hypothetical protein ECG581_1219 [Escherichia coli G58-1]
gi|417633585|ref|ZP_12283804.1| hypothetical protein ECSTECS1191_1494 [Escherichia coli STEC_S1191]
gi|417943941|ref|ZP_12587187.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli XH140A]
gi|417975272|ref|ZP_12616072.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli XH001]
gi|418301887|ref|ZP_12913681.1| hypothetical protein UMNF18_1042 [Escherichia coli UMNF18]
gi|418958712|ref|ZP_13510622.1| hypothetical protein OQE_28680 [Escherichia coli J53]
gi|419152880|ref|ZP_13697463.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC6C]
gi|419158295|ref|ZP_13702811.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC6D]
gi|419163262|ref|ZP_13707737.1| 23S rRNA methyltransferase [Escherichia coli DEC6E]
gi|419174472|ref|ZP_13718323.1| 23S rRNA methyltransferase [Escherichia coli DEC7B]
gi|419809398|ref|ZP_14334283.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O32:H37 str.
P4]
gi|419940874|ref|ZP_14457591.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli 75]
gi|422765521|ref|ZP_16819248.1| THUMP domain-containing protein [Escherichia coli E1520]
gi|422770181|ref|ZP_16823872.1| THUMP domain-containing protein [Escherichia coli E482]
gi|422785542|ref|ZP_16838281.1| THUMP domain-containing protein [Escherichia coli H489]
gi|422790351|ref|ZP_16843056.1| THUMP domain-containing protein [Escherichia coli TA007]
gi|423701795|ref|ZP_17676254.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
H730]
gi|425114313|ref|ZP_18516134.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
8.0566]
gi|425119022|ref|ZP_18520743.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
8.0569]
gi|425271742|ref|ZP_18663234.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW15901]
gi|425282366|ref|ZP_18673469.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW00353]
gi|432415937|ref|ZP_19658561.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE44]
gi|432484641|ref|ZP_19726561.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE212]
gi|432562947|ref|ZP_19799567.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE51]
gi|432626553|ref|ZP_19862534.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE77]
gi|432636221|ref|ZP_19872103.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE81]
gi|432660175|ref|ZP_19895825.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE111]
gi|432669893|ref|ZP_19905433.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE119]
gi|432684785|ref|ZP_19920094.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE156]
gi|432690872|ref|ZP_19926111.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE161]
gi|432703518|ref|ZP_19938637.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE171]
gi|432954247|ref|ZP_20146366.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE197]
gi|433047086|ref|ZP_20234494.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE120]
gi|433172778|ref|ZP_20357330.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE232]
gi|442595334|ref|ZP_21013183.1| 23S rRNA (guanine-N-2-)-methyltransferase rlmL EC 2.1.1.-)
[Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|442599823|ref|ZP_21017528.1| 23S rRNA (guanine-N-2-)-methyltransferase rlmL EC 2.1.1.-)
[Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|450241085|ref|ZP_21899531.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli S17]
gi|2501582|sp|P75864.1|RLMKL_ECOLI RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|229560150|sp|B1X8Q2.1|RLMKL_ECODH RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|238686818|sp|A7ZYQ0.1|RLMKL_ECOHS RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|238688381|sp|B1IVY4.1|RLMKL_ECOLC RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|378792509|pdb|3V8V|A Chain A, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sam Binding
gi|378792510|pdb|3V8V|B Chain B, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sam Binding
gi|1787181|gb|AAC74034.1| fused 23S rRNA m(2)G2445 and m(7)G2069 methyltransferase,
SAM-dependent [Escherichia coli str. K-12 substr.
MG1655]
gi|4062515|dbj|BAA35703.1| predicted methyltransferase [Escherichia coli str. K12 substr.
W3110]
gi|157066149|gb|ABV05404.1| putative RNA methylase family UPF0020 [Escherichia coli HS]
gi|169755579|gb|ACA78278.1| putative RNA methylase [Escherichia coli ATCC 8739]
gi|169888441|gb|ACB02148.1| 23S rRNA m2G2445 methyltransferase [Escherichia coli str. K-12
substr. DH10B]
gi|188487531|gb|EDU62634.1| putative methyltransferase [Escherichia coli 53638]
gi|194420882|gb|EDX36925.1| putative RNA methylase family UPF0020 [Escherichia coli 101-1]
gi|238862667|gb|ACR64665.1| predicted methyltransferase [Escherichia coli BW2952]
gi|260449906|gb|ACX40328.1| putative RNA methylase [Escherichia coli DH1]
gi|299881233|gb|EFI89444.1| THUMP domain protein [Escherichia coli MS 196-1]
gi|300317687|gb|EFJ67471.1| THUMP domain protein [Escherichia coli MS 175-1]
gi|300462424|gb|EFK25917.1| THUMP domain protein [Escherichia coli MS 187-1]
gi|301078185|gb|EFK92991.1| THUMP domain protein [Escherichia coli MS 146-1]
gi|309701227|emb|CBJ00527.1| putative RNA methylase [Escherichia coli ETEC H10407]
gi|310336842|gb|EFQ02009.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|315135596|dbj|BAJ42755.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli DH1]
gi|315619145|gb|EFU99725.1| conserved hypothetical protein [Escherichia coli 3431]
gi|323938054|gb|EGB34316.1| THUMP domain-containing protein [Escherichia coli E1520]
gi|323942864|gb|EGB39029.1| THUMP domain-containing protein [Escherichia coli E482]
gi|323962835|gb|EGB58410.1| THUMP domain-containing protein [Escherichia coli H489]
gi|323973175|gb|EGB68367.1| THUMP domain-containing protein [Escherichia coli TA007]
gi|339413985|gb|AEJ55657.1| hypothetical protein UMNF18_1042 [Escherichia coli UMNF18]
gi|342364427|gb|EGU28528.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli XH140A]
gi|344195263|gb|EGV49333.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli XH001]
gi|345365399|gb|EGW97508.1| hypothetical protein ECSTECEH250_1103 [Escherichia coli STEC_EH250]
gi|345380585|gb|EGX12484.1| hypothetical protein ECG581_1219 [Escherichia coli G58-1]
gi|345390299|gb|EGX20098.1| hypothetical protein ECSTECS1191_1494 [Escherichia coli STEC_S1191]
gi|359331639|dbj|BAL38086.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
MDS42]
gi|378002230|gb|EHV65283.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC6C]
gi|378011843|gb|EHV74779.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC6D]
gi|378015482|gb|EHV78377.1| 23S rRNA methyltransferase [Escherichia coli DEC6E]
gi|378036326|gb|EHV98869.1| 23S rRNA methyltransferase [Escherichia coli DEC7B]
gi|383102296|gb|AFG39805.1| hypothetical protein P12B_c0935 [Escherichia coli P12b]
gi|384378453|gb|EIE36334.1| hypothetical protein OQE_28680 [Escherichia coli J53]
gi|385157579|gb|EIF19570.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O32:H37 str.
P4]
gi|385711783|gb|EIG48740.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
H730]
gi|386122868|gb|EIG71475.1| ribosomal RNA large subunit methyltransferase L [Escherichia sp.
4_1_40B]
gi|386224751|gb|EII47086.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
2.3916]
gi|386232962|gb|EII64947.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
2.4168]
gi|386240807|gb|EII77727.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
3.2303]
gi|386255630|gb|EIJ05318.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
B41]
gi|388401939|gb|EIL62540.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli 75]
gi|404292192|gb|EJZ49023.1| ribosomal RNA large subunit methyltransferase L [Escherichia sp.
1_1_43]
gi|408196336|gb|EKI21618.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW15901]
gi|408205178|gb|EKI30078.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TW00353]
gi|408572025|gb|EKK47952.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
8.0566]
gi|408572640|gb|EKK48526.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
8.0569]
gi|430942482|gb|ELC62615.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE44]
gi|431017792|gb|ELD31247.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE212]
gi|431097508|gb|ELE02836.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE51]
gi|431164501|gb|ELE64892.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE77]
gi|431173115|gb|ELE73196.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE81]
gi|431202047|gb|ELF00743.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE111]
gi|431212423|gb|ELF10350.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE119]
gi|431223920|gb|ELF21164.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE156]
gi|431229258|gb|ELF25910.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE161]
gi|431246083|gb|ELF40361.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE171]
gi|431469545|gb|ELH49474.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE197]
gi|431570445|gb|ELI43357.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE120]
gi|431695491|gb|ELJ60798.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE232]
gi|441604571|emb|CCP98317.1| 23S rRNA (guanine-N-2-)-methyltransferase rlmL [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|441651316|emb|CCQ03018.1| 23S rRNA (guanine-N-2-)-methyltransferase rlmL [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|449324057|gb|EMD13998.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli S17]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|432860748|ref|ZP_20085832.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE146]
gi|431406757|gb|ELG89976.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE146]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|432615810|ref|ZP_19851936.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE75]
gi|431156459|gb|ELE57132.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE75]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|432579645|ref|ZP_19816076.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE56]
gi|431107635|gb|ELE11800.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE56]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|82544728|ref|YP_408675.1| 23S rRNA m(2)G2445 methyltransferase [Shigella boydii Sb227]
gi|416292541|ref|ZP_11650218.1| putative RNA methylase family UPF0020 [Shigella flexneri CDC
796-83]
gi|417682746|ref|ZP_12332099.1| hypothetical protein SB359474_2639 [Shigella boydii 3594-74]
gi|420326299|ref|ZP_14828051.1| ribosomal RNA large subunit methyltransferase L [Shigella flexneri
CCH060]
gi|420353231|ref|ZP_14854350.1| ribosomal RNA large subunit methyltransferase L [Shigella boydii
4444-74]
gi|421681652|ref|ZP_16121475.1| 23S rRNA methyltransferase [Shigella flexneri 1485-80]
gi|123559168|sp|Q31YL1.1|RLMKL_SHIBS RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|81246139|gb|ABB66847.1| putative oxidoreductase [Shigella boydii Sb227]
gi|320187159|gb|EFW61860.1| putative RNA methylase family UPF0020 [Shigella flexneri CDC
796-83]
gi|332093430|gb|EGI98488.1| hypothetical protein SB359474_2639 [Shigella boydii 3594-74]
gi|391250802|gb|EIQ10022.1| ribosomal RNA large subunit methyltransferase L [Shigella flexneri
CCH060]
gi|391279091|gb|EIQ37781.1| ribosomal RNA large subunit methyltransferase L [Shigella boydii
4444-74]
gi|404341290|gb|EJZ67699.1| 23S rRNA methyltransferase [Shigella flexneri 1485-80]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|425299291|ref|ZP_18689333.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
07798]
gi|408220943|gb|EKI44934.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
07798]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|419925637|ref|ZP_14443470.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli 541-15]
gi|388385958|gb|EIL47621.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli 541-15]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|378792513|pdb|3V97|A Chain A, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sah Binding
gi|378792514|pdb|3V97|B Chain B, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sah Binding
Length = 703
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 131 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 190
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 191 GTPLLDPMCGSGTLLIEAAM 210
>gi|416264371|ref|ZP_11641019.1| putative RNA methylase [Shigella dysenteriae CDC 74-1112]
gi|420381069|ref|ZP_14880524.1| ribosomal RNA large subunit methyltransferase L [Shigella
dysenteriae 225-75]
gi|320176238|gb|EFW51299.1| putative RNA methylase [Shigella dysenteriae CDC 74-1112]
gi|391301104|gb|EIQ59007.1| ribosomal RNA large subunit methyltransferase L [Shigella
dysenteriae 225-75]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|300949682|ref|ZP_07163664.1| THUMP domain protein [Escherichia coli MS 116-1]
gi|300450922|gb|EFK14542.1| THUMP domain protein [Escherichia coli MS 116-1]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|293409326|ref|ZP_06652902.1| conserved hypothetical protein [Escherichia coli B354]
gi|300824163|ref|ZP_07104282.1| THUMP domain protein [Escherichia coli MS 119-7]
gi|300902889|ref|ZP_07120834.1| THUMP domain protein [Escherichia coli MS 84-1]
gi|300921012|ref|ZP_07137399.1| THUMP domain protein [Escherichia coli MS 115-1]
gi|301023076|ref|ZP_07186883.1| THUMP domain protein [Escherichia coli MS 69-1]
gi|301302436|ref|ZP_07208567.1| THUMP domain protein [Escherichia coli MS 124-1]
gi|331651970|ref|ZP_08352989.1| putative oxidoreductase [Escherichia coli M718]
gi|331662359|ref|ZP_08363282.1| putative oxidoreductase [Escherichia coli TA143]
gi|331667330|ref|ZP_08368195.1| putative oxidoreductase [Escherichia coli TA271]
gi|331676738|ref|ZP_08377434.1| putative oxidoreductase [Escherichia coli H591]
gi|331682452|ref|ZP_08383071.1| putative oxidoreductase [Escherichia coli H299]
gi|387606492|ref|YP_006095348.1| putative RNA methylase [Escherichia coli 042]
gi|415860965|ref|ZP_11534680.1| THUMP domain protein [Escherichia coli MS 85-1]
gi|417224891|ref|ZP_12028182.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
96.154]
gi|417266883|ref|ZP_12054244.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
3.3884]
gi|417601360|ref|ZP_12251938.1| hypothetical protein ECSTEC94C_1149 [Escherichia coli STEC_94C]
gi|417627884|ref|ZP_12278131.1| hypothetical protein ECSTECMHI813_0803 [Escherichia coli
STEC_MHI813]
gi|417638285|ref|ZP_12288450.1| hypothetical protein ECTX1999_0997 [Escherichia coli TX1999]
gi|418944707|ref|ZP_13497721.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H43
str. T22]
gi|419141477|ref|ZP_13686231.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC6A]
gi|419147306|ref|ZP_13691996.1| 23S rRNA methyltransferase [Escherichia coli DEC6B]
gi|419168939|ref|ZP_13713333.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC7A]
gi|419179921|ref|ZP_13723544.1| 23S rRNA methyltransferase [Escherichia coli DEC7C]
gi|419190748|ref|ZP_13734214.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC7E]
gi|419918078|ref|ZP_14436294.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli KD2]
gi|420384579|ref|ZP_14883963.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EPECa12]
gi|422819976|ref|ZP_16868186.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
M919]
gi|422833150|ref|ZP_16881217.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
E101]
gi|423708869|ref|ZP_17683247.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
B799]
gi|424815859|ref|ZP_18241010.1| hypothetical protein ECD227_0976 [Escherichia fergusonii ECD227]
gi|425287483|ref|ZP_18678406.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
3006]
gi|432376059|ref|ZP_19619067.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE12]
gi|432530282|ref|ZP_19767322.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE233]
gi|432533172|ref|ZP_19770163.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE234]
gi|432542332|ref|ZP_19779188.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE236]
gi|432547802|ref|ZP_19784589.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE237]
gi|432601485|ref|ZP_19837732.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE66]
gi|432621086|ref|ZP_19857127.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE76]
gi|432717996|ref|ZP_19952980.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE9]
gi|432792160|ref|ZP_20026249.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE78]
gi|432798123|ref|ZP_20032147.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE79]
gi|432814597|ref|ZP_20048387.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE115]
gi|432834029|ref|ZP_20067571.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE136]
gi|433134126|ref|ZP_20319497.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE166]
gi|450187330|ref|ZP_21889766.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli SEPT362]
gi|284920792|emb|CBG33855.1| putative RNA methylase [Escherichia coli 042]
gi|291469794|gb|EFF12278.1| conserved hypothetical protein [Escherichia coli B354]
gi|300397197|gb|EFJ80735.1| THUMP domain protein [Escherichia coli MS 69-1]
gi|300405031|gb|EFJ88569.1| THUMP domain protein [Escherichia coli MS 84-1]
gi|300412003|gb|EFJ95313.1| THUMP domain protein [Escherichia coli MS 115-1]
gi|300523339|gb|EFK44408.1| THUMP domain protein [Escherichia coli MS 119-7]
gi|300842275|gb|EFK70035.1| THUMP domain protein [Escherichia coli MS 124-1]
gi|315257995|gb|EFU37963.1| THUMP domain protein [Escherichia coli MS 85-1]
gi|325496879|gb|EGC94738.1| hypothetical protein ECD227_0976 [Escherichia fergusonii ECD227]
gi|331050248|gb|EGI22306.1| putative oxidoreductase [Escherichia coli M718]
gi|331060781|gb|EGI32745.1| putative oxidoreductase [Escherichia coli TA143]
gi|331065686|gb|EGI37579.1| putative oxidoreductase [Escherichia coli TA271]
gi|331075427|gb|EGI46725.1| putative oxidoreductase [Escherichia coli H591]
gi|331080083|gb|EGI51262.1| putative oxidoreductase [Escherichia coli H299]
gi|345351963|gb|EGW84213.1| hypothetical protein ECSTEC94C_1149 [Escherichia coli STEC_94C]
gi|345378188|gb|EGX10119.1| hypothetical protein ECSTECMHI813_0803 [Escherichia coli
STEC_MHI813]
gi|345394782|gb|EGX24536.1| hypothetical protein ECTX1999_0997 [Escherichia coli TX1999]
gi|371607900|gb|EHN96463.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
E101]
gi|375319984|gb|EHS66015.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O157:H43
str. T22]
gi|377999092|gb|EHV62179.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC6A]
gi|377999962|gb|EHV63037.1| 23S rRNA methyltransferase [Escherichia coli DEC6B]
gi|378018157|gb|EHV81024.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC7A]
gi|378027106|gb|EHV89738.1| 23S rRNA methyltransferase [Escherichia coli DEC7C]
gi|378040811|gb|EHW03274.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC7E]
gi|385536591|gb|EIF83484.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
M919]
gi|385707590|gb|EIG44621.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
B799]
gi|386199939|gb|EIH98930.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
96.154]
gi|386229241|gb|EII56596.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
3.3884]
gi|388392297|gb|EIL53718.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli KD2]
gi|391308937|gb|EIQ66624.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EPECa12]
gi|408217770|gb|EKI42009.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
3006]
gi|430900687|gb|ELC22705.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE12]
gi|431056656|gb|ELD66157.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE233]
gi|431062893|gb|ELD72153.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE234]
gi|431076586|gb|ELD84081.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE236]
gi|431083738|gb|ELD89910.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE237]
gi|431142419|gb|ELE44167.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE66]
gi|431161552|gb|ELE62023.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE76]
gi|431265099|gb|ELF56796.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE9]
gi|431341262|gb|ELG28275.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE78]
gi|431344274|gb|ELG31212.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE79]
gi|431366820|gb|ELG53317.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE115]
gi|431386910|gb|ELG70863.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE136]
gi|431661227|gb|ELJ28043.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE166]
gi|449323704|gb|EMD13653.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli SEPT362]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|432736448|ref|ZP_19971219.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE42]
gi|431285988|gb|ELF76823.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE42]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|432521639|ref|ZP_19758794.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE228]
gi|431043782|gb|ELD54063.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE228]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|432464903|ref|ZP_19707008.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE205]
gi|432582996|ref|ZP_19819406.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE57]
gi|433071989|ref|ZP_20258682.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE129]
gi|433119488|ref|ZP_20305193.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE157]
gi|433182476|ref|ZP_20366770.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE85]
gi|430996460|gb|ELD12744.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE205]
gi|431120012|gb|ELE23011.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE57]
gi|431591852|gb|ELI62761.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE129]
gi|431647807|gb|ELJ15212.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE157]
gi|431710904|gb|ELJ75269.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE85]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|293414228|ref|ZP_06656877.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
B185]
gi|291434286|gb|EFF07259.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
B185]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|260854240|ref|YP_003228131.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O26:H11 str.
11368]
gi|260867120|ref|YP_003233522.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
gi|415782160|ref|ZP_11491398.1| hypothetical protein ECEPECA14_0949 [Escherichia coli EPECa14]
gi|415824641|ref|ZP_11512875.1| hypothetical protein ECOK1180_5708 [Escherichia coli OK1180]
gi|417193237|ref|ZP_12015084.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
4.0522]
gi|417209622|ref|ZP_12020906.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
JB1-95]
gi|417590674|ref|ZP_12241389.1| hypothetical protein EC253486_1273 [Escherichia coli 2534-86]
gi|419196074|ref|ZP_13739478.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC8A]
gi|419202133|ref|ZP_13745355.1| 23S rRNA methyltransferase [Escherichia coli DEC8B]
gi|419214651|ref|ZP_13757673.1| 23S rRNA methyltransferase [Escherichia coli DEC8D]
gi|419220251|ref|ZP_13763203.1| 23S rRNA methyltransferase [Escherichia coli DEC8E]
gi|419225825|ref|ZP_13768703.1| 23S rRNA methyltransferase [Escherichia coli DEC9A]
gi|419231576|ref|ZP_13774364.1| 23S rRNA methyltransferase [Escherichia coli DEC9B]
gi|419236928|ref|ZP_13779671.1| 23S rRNA methyltransferase [Escherichia coli DEC9C]
gi|419242462|ref|ZP_13785109.1| 23S rRNA methyltransferase [Escherichia coli DEC9D]
gi|419247983|ref|ZP_13790590.1| 23S rRNA methyltransferase [Escherichia coli DEC9E]
gi|419253720|ref|ZP_13796259.1| 23S rRNA methyltransferase [Escherichia coli DEC10A]
gi|419259850|ref|ZP_13802292.1| 23S rRNA methyltransferase [Escherichia coli DEC10B]
gi|419265560|ref|ZP_13807941.1| 23S rRNA methyltransferase [Escherichia coli DEC10C]
gi|419271461|ref|ZP_13813785.1| 23S rRNA methyltransferase [Escherichia coli DEC10D]
gi|419282963|ref|ZP_13825172.1| 23S rRNA methyltransferase [Escherichia coli DEC10F]
gi|419888953|ref|ZP_14409405.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O111:H8 str.
CVM9570]
gi|419894701|ref|ZP_14414597.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O111:H8 str.
CVM9574]
gi|419902317|ref|ZP_14421554.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O26:H11 str.
CVM9942]
gi|419908640|ref|ZP_14427330.1| putative methyltransferase [Escherichia coli O26:H11 str. CVM10026]
gi|420088664|ref|ZP_14600524.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O111:H8 str.
CVM9602]
gi|420098162|ref|ZP_14609443.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O111:H8 str.
CVM9634]
gi|420115665|ref|ZP_14625186.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O26:H11 str.
CVM10021]
gi|420128180|ref|ZP_14636740.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O26:H11 str.
CVM10224]
gi|420131592|ref|ZP_14640017.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O26:H11 str.
CVM9952]
gi|424752358|ref|ZP_18180359.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424769319|ref|ZP_18196546.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O111:H8 str.
CFSAN001632]
gi|425377862|ref|ZP_18762227.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1865]
gi|257752889|dbj|BAI24391.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368]
gi|257763476|dbj|BAI34971.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
gi|323157158|gb|EFZ43281.1| hypothetical protein ECEPECA14_0949 [Escherichia coli EPECa14]
gi|323175424|gb|EFZ61019.1| hypothetical protein ECOK1180_5708 [Escherichia coli OK1180]
gi|345344620|gb|EGW76987.1| hypothetical protein EC253486_1273 [Escherichia coli 2534-86]
gi|378051882|gb|EHW14197.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC8A]
gi|378055777|gb|EHW18038.1| 23S rRNA methyltransferase [Escherichia coli DEC8B]
gi|378066904|gb|EHW29032.1| 23S rRNA methyltransferase [Escherichia coli DEC8D]
gi|378071485|gb|EHW33555.1| 23S rRNA methyltransferase [Escherichia coli DEC8E]
gi|378079125|gb|EHW41103.1| 23S rRNA methyltransferase [Escherichia coli DEC9A]
gi|378081294|gb|EHW43249.1| 23S rRNA methyltransferase [Escherichia coli DEC9B]
gi|378087791|gb|EHW49647.1| 23S rRNA methyltransferase [Escherichia coli DEC9C]
gi|378093813|gb|EHW55617.1| 23S rRNA methyltransferase [Escherichia coli DEC9D]
gi|378100148|gb|EHW61845.1| 23S rRNA methyltransferase [Escherichia coli DEC9E]
gi|378105260|gb|EHW66907.1| 23S rRNA methyltransferase [Escherichia coli DEC10A]
gi|378113746|gb|EHW75309.1| 23S rRNA methyltransferase [Escherichia coli DEC10B]
gi|378117139|gb|EHW78655.1| 23S rRNA methyltransferase [Escherichia coli DEC10C]
gi|378120992|gb|EHW82454.1| 23S rRNA methyltransferase [Escherichia coli DEC10D]
gi|378137730|gb|EHW98999.1| 23S rRNA methyltransferase [Escherichia coli DEC10F]
gi|386190418|gb|EIH79166.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
4.0522]
gi|386196247|gb|EIH90473.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
JB1-95]
gi|388358844|gb|EIL23232.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O111:H8 str.
CVM9570]
gi|388363538|gb|EIL27467.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O111:H8 str.
CVM9574]
gi|388374288|gb|EIL37467.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O26:H11 str.
CVM9942]
gi|388374670|gb|EIL37784.1| putative methyltransferase [Escherichia coli O26:H11 str. CVM10026]
gi|394382341|gb|EJE59988.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O111:H8 str.
CVM9634]
gi|394386215|gb|EJE63725.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O26:H11 str.
CVM10224]
gi|394389454|gb|EJE66596.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O111:H8 str.
CVM9602]
gi|394405983|gb|EJE81075.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O26:H11 str.
CVM10021]
gi|394431441|gb|EJF03641.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O26:H11 str.
CVM9952]
gi|408308658|gb|EKJ25894.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
EC1865]
gi|421937909|gb|EKT95501.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421943968|gb|EKU01230.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O111:H8 str.
CFSAN001632]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|432874125|ref|ZP_20093262.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE147]
gi|431404111|gb|ELG87369.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE147]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|419928577|ref|ZP_14446286.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli 541-1]
gi|388405332|gb|EIL65763.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli 541-1]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|419864988|ref|ZP_14387383.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O103:H25
str. CVM9340]
gi|388338679|gb|EIL05127.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O103:H25
str. CVM9340]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|417295068|ref|ZP_12082324.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
900105 (10e)]
gi|386261431|gb|EIJ16896.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
900105 (10e)]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|422970854|ref|ZP_16974366.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TA124]
gi|371599597|gb|EHN88381.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
TA124]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|218553535|ref|YP_002386448.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli IAI1]
gi|417144235|ref|ZP_11986041.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
1.2264]
gi|422775229|ref|ZP_16828885.1| THUMP domain-containing protein [Escherichia coli H120]
gi|218360303|emb|CAQ97853.1| putative conserved AdoMet-dependent methyltransferase with RNA
interaction domain [Escherichia coli IAI1]
gi|323947262|gb|EGB43270.1| THUMP domain-containing protein [Escherichia coli H120]
gi|386164118|gb|EIH25904.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
1.2264]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|443625470|ref|ZP_21109911.1| hypothetical protein STVIR_3816 [Streptomyces viridochromogenes
Tue57]
gi|443341024|gb|ELS55225.1| hypothetical protein STVIR_3816 [Streptomyces viridochromogenes
Tue57]
Length = 350
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 3/169 (1%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNIVEFNI-TTLKPTIAYNMVRLASPIPGDVFLDPMC 320
+ + + ++A + + + + LHRR + ++ TL P +A M L PG LDP C
Sbjct: 146 VRVTLDGDQAVLAVRIAERPLHRRTYKQESVRGTLHPPLAAAMAGLTDLFPGARVLDPSC 205
Query: 321 GGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380
G GT+ +E LS + G ++ L A + ++ ++ V + +L
Sbjct: 206 GTGTLLIESQLSV-SGLRLLGTDHDPATLALAAANAAAARPAGQD-PIAWAVADAGRLPV 263
Query: 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429
+D ++ + P+G +V F ++ ++++P GRA+LL
Sbjct: 264 ADGTIDRVIGNPPWGLQVDPAGVLARQPSAFYQQVHRVLKPGTGRAVLL 312
>gi|432977595|ref|ZP_20166418.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE209]
gi|433086547|ref|ZP_20272941.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE137]
gi|431481106|gb|ELH60820.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE209]
gi|431608924|gb|ELI78261.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE137]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|432849405|ref|ZP_20080627.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE144]
gi|431401405|gb|ELG84749.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE144]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|82776239|ref|YP_402588.1| 23S rRNA m(2)G2445 methyltransferase [Shigella dysenteriae Sd197]
gi|309786680|ref|ZP_07681300.1| conserved hypothetical protein [Shigella dysenteriae 1617]
gi|123563027|sp|Q32HV8.1|RLMKL_SHIDS RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|81240387|gb|ABB61097.1| putative oxidoreductase [Shigella dysenteriae Sd197]
gi|308925373|gb|EFP70860.1| conserved hypothetical protein [Shigella dysenteriae 1617]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|409123272|ref|ZP_11222667.1| rRNA (guanine-N(2)-)-methyltransferase [Gillisia sp. CBA3202]
Length = 392
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VDLD + IN+ I +N V L + SLH+R NI + +A M+ +
Sbjct: 135 VDLDFPTLRINIHIEHNYCNVSLDSSGQSLHKRGYKTATNIAPINEVLAAGMLLFSGWDG 194
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GTI +E ++
Sbjct: 195 QSDFMDPMCGSGTILIEAAM 214
>gi|402890648|ref|XP_003908594.1| PREDICTED: THUMP domain-containing protein 2-like [Papio anubis]
Length = 303
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 89/221 (40%), Gaps = 42/221 (19%)
Query: 122 WKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKE------------S 169
W + IWK + + E+ ++ +D +K NEI I K+
Sbjct: 104 WLNAISIWKNLLELDA----KKEKLSQRDDNQLKRKVGENEIIIAKKLKIEQMQKIEENR 159
Query: 170 SCETEPQVNNVQIEKGDL-------QNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRV 222
C+ E Q+ +E+ D Q +E + DI + NQK L FRV
Sbjct: 160 DCQLEKQIEEETLEQRDFTTKSENFQEEEFRN-DIEKAIDTHNQKD---------LTFRV 209
Query: 223 TCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQT 280
+C G +T+ E R G + + W DL + ++I + + + VG+PV +
Sbjct: 210 SCRCSGTIGKALTAQEVGRIIGIAIMKHFGWKADLRNPKLEIFIHLNDVYSVVGIPVFRV 269
Query: 281 SLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCG 321
L R ++ L+ TIA+ M LA D+ + CG
Sbjct: 270 PLASRAYIK--TAGLRSTIAWAMASLA-----DIKVPYGCG 303
>gi|419185481|ref|ZP_13729003.1| 23S rRNA methyltransferase [Escherichia coli DEC7D]
gi|378032899|gb|EHV95480.1| 23S rRNA methyltransferase [Escherichia coli DEC7D]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|417137657|ref|ZP_11981447.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
97.0259]
gi|417307419|ref|ZP_12094287.1| Ribosomal RNA large subunit methyltransferase L [Escherichia coli
PCN033]
gi|338770992|gb|EGP25744.1| Ribosomal RNA large subunit methyltransferase L [Escherichia coli
PCN033]
gi|386159221|gb|EIH15554.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
97.0259]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|306812605|ref|ZP_07446798.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli NC101]
gi|432380571|ref|ZP_19623523.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE15]
gi|432386439|ref|ZP_19629335.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE16]
gi|432513183|ref|ZP_19750418.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE224]
gi|432610614|ref|ZP_19846785.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE72]
gi|432645371|ref|ZP_19881170.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE86]
gi|432655209|ref|ZP_19890920.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE93]
gi|432698295|ref|ZP_19933461.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE169]
gi|432744913|ref|ZP_19979612.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE43]
gi|432903577|ref|ZP_20112993.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE194]
gi|432943024|ref|ZP_20140148.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE183]
gi|432971103|ref|ZP_20159978.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE207]
gi|432984571|ref|ZP_20173307.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE215]
gi|433037983|ref|ZP_20225595.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE113]
gi|433081868|ref|ZP_20268342.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE133]
gi|433100452|ref|ZP_20286559.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE145]
gi|433143565|ref|ZP_20328729.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE168]
gi|433187728|ref|ZP_20371845.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE88]
gi|305853368|gb|EFM53807.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli NC101]
gi|430909360|gb|ELC30745.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE16]
gi|430910626|gb|ELC31933.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE15]
gi|431044222|gb|ELD54502.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE224]
gi|431150955|gb|ELE51997.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE72]
gi|431182602|gb|ELE82419.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE86]
gi|431193820|gb|ELE93094.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE93]
gi|431246435|gb|ELF40701.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE169]
gi|431294389|gb|ELF84569.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE43]
gi|431435364|gb|ELH16975.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE194]
gi|431452419|gb|ELH32864.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE183]
gi|431485359|gb|ELH65021.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE207]
gi|431504576|gb|ELH83201.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE215]
gi|431554153|gb|ELI28035.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE113]
gi|431605703|gb|ELI75092.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE133]
gi|431621909|gb|ELI90699.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE145]
gi|431664923|gb|ELJ31651.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE168]
gi|431708728|gb|ELJ73236.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE88]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|218700533|ref|YP_002408162.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli IAI39]
gi|386623354|ref|YP_006143082.1| methyltransferase, SAM-dependent [Escherichia coli O7:K1 str. CE10]
gi|218370519|emb|CAR18326.1| putative conserved AdoMet-dependent methyltransferase with RNA
interaction domain [Escherichia coli IAI39]
gi|349737092|gb|AEQ11798.1| methyltransferase, SAM-dependent [Escherichia coli O7:K1 str. CE10]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|191166960|ref|ZP_03028783.1| putative RNA methylase family UPF0020 [Escherichia coli B7A]
gi|193071757|ref|ZP_03052654.1| putative RNA methylase family UPF0020 [Escherichia coli E110019]
gi|209918200|ref|YP_002292284.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli SE11]
gi|260843197|ref|YP_003220975.1| methyltransferase [Escherichia coli O103:H2 str. 12009]
gi|293433245|ref|ZP_06661673.1| oxidoreductase [Escherichia coli B088]
gi|309795062|ref|ZP_07689482.1| THUMP domain protein [Escherichia coli MS 145-7]
gi|332279871|ref|ZP_08392284.1| 23S rRNA m(2) methyltransferase [Shigella sp. D9]
gi|415803348|ref|ZP_11500457.1| hypothetical protein ECE128010_4195 [Escherichia coli E128010]
gi|415809464|ref|ZP_11502234.1| hypothetical protein ECLT68_0502 [Escherichia coli LT-68]
gi|415827524|ref|ZP_11514365.1| hypothetical protein ECOK1357_1294 [Escherichia coli OK1357]
gi|417130801|ref|ZP_11976072.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
5.0588]
gi|417171236|ref|ZP_12001765.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
3.2608]
gi|417180521|ref|ZP_12008229.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
93.0624]
gi|417241508|ref|ZP_12037454.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
9.0111]
gi|417251321|ref|ZP_12043086.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
4.0967]
gi|417595970|ref|ZP_12246629.1| hypothetical protein EC30301_1107 [Escherichia coli 3030-1]
gi|417622376|ref|ZP_12272696.1| hypothetical protein ECSTECH18_1129 [Escherichia coli STEC_H.1.8]
gi|418043093|ref|ZP_12681267.1| THUMP domain protein [Escherichia coli W26]
gi|419277228|ref|ZP_13819489.1| 23S rRNA methyltransferase [Escherichia coli DEC10E]
gi|419288534|ref|ZP_13830643.1| 23S rRNA methyltransferase [Escherichia coli DEC11A]
gi|419293843|ref|ZP_13835898.1| 23S rRNA methyltransferase [Escherichia coli DEC11B]
gi|419299253|ref|ZP_13841266.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC11C]
gi|419305545|ref|ZP_13847455.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC11D]
gi|419310583|ref|ZP_13852454.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC11E]
gi|419315871|ref|ZP_13857694.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC12A]
gi|419321821|ref|ZP_13863552.1| 23S rRNA methyltransferase [Escherichia coli DEC12B]
gi|419327948|ref|ZP_13869576.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC12C]
gi|419333470|ref|ZP_13875025.1| 23S rRNA methyltransferase [Escherichia coli DEC12D]
gi|419338788|ref|ZP_13880273.1| 23S rRNA methyltransferase [Escherichia coli DEC12E]
gi|419344579|ref|ZP_13885961.1| 23S rRNA methyltransferase [Escherichia coli DEC13A]
gi|419349015|ref|ZP_13890368.1| 23S rRNA methyltransferase [Escherichia coli DEC13B]
gi|419354113|ref|ZP_13895389.1| 23S rRNA methyltransferase [Escherichia coli DEC13C]
gi|419359402|ref|ZP_13900627.1| 23S rRNA methyltransferase [Escherichia coli DEC13D]
gi|419364494|ref|ZP_13905666.1| 23S rRNA methyltransferase [Escherichia coli DEC13E]
gi|419374717|ref|ZP_13915764.1| 23S rRNA methyltransferase [Escherichia coli DEC14B]
gi|419380012|ref|ZP_13920979.1| 23S rRNA methyltransferase [Escherichia coli DEC14C]
gi|419385359|ref|ZP_13926247.1| 23S rRNA methyltransferase [Escherichia coli DEC14D]
gi|419803595|ref|ZP_14328764.1| THUMP domain protein [Escherichia coli AI27]
gi|419870296|ref|ZP_14392411.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O103:H2 str.
CVM9450]
gi|419951989|ref|ZP_14468167.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli CUMT8]
gi|420390427|ref|ZP_14889694.1| 23S rRNA methyltransferase [Escherichia coli EPEC C342-62]
gi|422352909|ref|ZP_16433677.1| THUMP domain protein [Escherichia coli MS 117-3]
gi|425421546|ref|ZP_18802752.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
0.1288]
gi|432480324|ref|ZP_19722285.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE210]
gi|432673950|ref|ZP_19909436.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE142]
gi|432749430|ref|ZP_19984042.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE29]
gi|432813053|ref|ZP_20046898.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE101]
gi|432967045|ref|ZP_20155961.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE203]
gi|433091277|ref|ZP_20277571.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE138]
gi|190902954|gb|EDV62680.1| putative RNA methylase family UPF0020 [Escherichia coli B7A]
gi|192954931|gb|EDV85437.1| putative RNA methylase family UPF0020 [Escherichia coli E110019]
gi|209911459|dbj|BAG76533.1| putative oxidoreductase [Escherichia coli SE11]
gi|257758344|dbj|BAI29841.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
gi|291324064|gb|EFE63486.1| oxidoreductase [Escherichia coli B088]
gi|308121366|gb|EFO58628.1| THUMP domain protein [Escherichia coli MS 145-7]
gi|323159579|gb|EFZ45559.1| hypothetical protein ECE128010_4195 [Escherichia coli E128010]
gi|323174945|gb|EFZ60560.1| hypothetical protein ECLT68_0502 [Escherichia coli LT-68]
gi|323185341|gb|EFZ70705.1| hypothetical protein ECOK1357_1294 [Escherichia coli OK1357]
gi|324019040|gb|EGB88259.1| THUMP domain protein [Escherichia coli MS 117-3]
gi|332102223|gb|EGJ05569.1| 23S rRNA m(2) methyltransferase [Shigella sp. D9]
gi|345358716|gb|EGW90899.1| hypothetical protein EC30301_1107 [Escherichia coli 3030-1]
gi|345384542|gb|EGX14404.1| hypothetical protein ECSTECH18_1129 [Escherichia coli STEC_H.1.8]
gi|378132397|gb|EHW93749.1| 23S rRNA methyltransferase [Escherichia coli DEC10E]
gi|378134919|gb|EHW96233.1| 23S rRNA methyltransferase [Escherichia coli DEC11A]
gi|378145342|gb|EHX06508.1| 23S rRNA methyltransferase [Escherichia coli DEC11B]
gi|378152024|gb|EHX13126.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC11D]
gi|378155207|gb|EHX16267.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC11C]
gi|378160298|gb|EHX21295.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC11E]
gi|378172756|gb|EHX33604.1| 23S rRNA methyltransferase [Escherichia coli DEC12B]
gi|378173609|gb|EHX34445.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC12A]
gi|378175407|gb|EHX36225.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC12C]
gi|378188706|gb|EHX49302.1| 23S rRNA methyltransferase [Escherichia coli DEC12D]
gi|378189007|gb|EHX49601.1| 23S rRNA methyltransferase [Escherichia coli DEC13A]
gi|378193311|gb|EHX53852.1| 23S rRNA methyltransferase [Escherichia coli DEC12E]
gi|378204677|gb|EHX65093.1| 23S rRNA methyltransferase [Escherichia coli DEC13B]
gi|378206506|gb|EHX66909.1| 23S rRNA methyltransferase [Escherichia coli DEC13C]
gi|378206861|gb|EHX67263.1| 23S rRNA methyltransferase [Escherichia coli DEC13D]
gi|378216315|gb|EHX76602.1| 23S rRNA methyltransferase [Escherichia coli DEC13E]
gi|378223850|gb|EHX84061.1| 23S rRNA methyltransferase [Escherichia coli DEC14B]
gi|378230907|gb|EHX91019.1| 23S rRNA methyltransferase [Escherichia coli DEC14C]
gi|378234808|gb|EHX94884.1| 23S rRNA methyltransferase [Escherichia coli DEC14D]
gi|383473932|gb|EID65937.1| THUMP domain protein [Escherichia coli W26]
gi|384473333|gb|EIE57375.1| THUMP domain protein [Escherichia coli AI27]
gi|386153909|gb|EIH05190.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
5.0588]
gi|386181160|gb|EIH58630.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
3.2608]
gi|386185876|gb|EIH68602.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
93.0624]
gi|386212189|gb|EII22638.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
9.0111]
gi|386218170|gb|EII34653.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
4.0967]
gi|388339914|gb|EIL06230.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O103:H2 str.
CVM9450]
gi|388413270|gb|EIL73275.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli CUMT8]
gi|391314290|gb|EIQ71846.1| 23S rRNA methyltransferase [Escherichia coli EPEC C342-62]
gi|408347020|gb|EKJ61261.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
0.1288]
gi|431009271|gb|ELD23891.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE210]
gi|431216745|gb|ELF14338.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE142]
gi|431298720|gb|ELF88344.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE29]
gi|431356259|gb|ELG42950.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE101]
gi|431473017|gb|ELH52851.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE203]
gi|431613241|gb|ELI82441.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE138]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|157155561|ref|YP_001462181.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli E24377A]
gi|218694423|ref|YP_002402090.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli 55989]
gi|300925371|ref|ZP_07141257.1| THUMP domain protein [Escherichia coli MS 182-1]
gi|301327224|ref|ZP_07220484.1| THUMP domain protein [Escherichia coli MS 78-1]
gi|386613223|ref|YP_006132889.1| hypothetical protein UMNK88_1103 [Escherichia coli UMNK88]
gi|407468424|ref|YP_006785134.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407482845|ref|YP_006779994.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O104:H4 str.
2011C-3493]
gi|410483397|ref|YP_006770943.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O104:H4 str.
2009EL-2050]
gi|417120451|ref|ZP_11970009.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
97.0246]
gi|417607180|ref|ZP_12257699.1| hypothetical protein ECSTECDG1313_1575 [Escherichia coli
STEC_DG131-3]
gi|417832081|ref|ZP_12478601.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O104:H4 str.
01-09591]
gi|419390410|ref|ZP_13931244.1| 23S rRNA methyltransferase [Escherichia coli DEC15A]
gi|419395567|ref|ZP_13936349.1| 23S rRNA methyltransferase [Escherichia coli DEC15B]
gi|419400922|ref|ZP_13941653.1| 23S rRNA methyltransferase [Escherichia coli DEC15C]
gi|419406134|ref|ZP_13946833.1| 23S rRNA methyltransferase [Escherichia coli DEC15D]
gi|419411601|ref|ZP_13952269.1| 23S rRNA methyltransferase [Escherichia coli DEC15E]
gi|421775890|ref|ZP_16212497.1| THUMP domain protein [Escherichia coli AD30]
gi|422762980|ref|ZP_16816736.1| THUMP domain-containing protein [Escherichia coli E1167]
gi|422958878|ref|ZP_16970809.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
H494]
gi|422991683|ref|ZP_16982454.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. C227-11]
gi|422993625|ref|ZP_16984389.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. C236-11]
gi|422998893|ref|ZP_16989649.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 09-7901]
gi|423007351|ref|ZP_16998094.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 04-8351]
gi|423008943|ref|ZP_16999681.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-3677]
gi|423023131|ref|ZP_17013834.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-4404]
gi|423028283|ref|ZP_17018976.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-4522]
gi|423034117|ref|ZP_17024801.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-4623]
gi|423036983|ref|ZP_17027657.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|423042102|ref|ZP_17032769.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|423048792|ref|ZP_17039449.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|423052374|ref|ZP_17041182.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|423059340|ref|ZP_17048136.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|429723174|ref|ZP_19258063.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429775348|ref|ZP_19307346.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-02030]
gi|429780539|ref|ZP_19312487.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429784588|ref|ZP_19316497.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-02092]
gi|429789925|ref|ZP_19321797.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-02093]
gi|429796155|ref|ZP_19327978.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-02281]
gi|429802080|ref|ZP_19333855.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-02318]
gi|429805712|ref|ZP_19337456.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-02913]
gi|429811308|ref|ZP_19343007.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-03439]
gi|429816659|ref|ZP_19348315.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-04080]
gi|429821869|ref|ZP_19353480.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-03943]
gi|429907536|ref|ZP_19373504.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429911738|ref|ZP_19377694.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429917572|ref|ZP_19383512.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429922610|ref|ZP_19388531.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429923463|ref|ZP_19389379.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429932358|ref|ZP_19398252.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429933960|ref|ZP_19399850.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429939619|ref|ZP_19405493.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429947261|ref|ZP_19413116.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429949893|ref|ZP_19415741.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429958171|ref|ZP_19424000.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec12-0466]
gi|432764271|ref|ZP_19998719.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE48]
gi|432880684|ref|ZP_20097219.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE154]
gi|450212939|ref|ZP_21894680.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O08]
gi|229560149|sp|A7ZK52.1|RLMKL_ECO24 RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|157077591|gb|ABV17299.1| putative RNA methylase family UPF0020 [Escherichia coli E24377A]
gi|218351155|emb|CAU96859.1| putative conserved AdoMet-dependent methyltransferase with RNA
interaction domain [Escherichia coli 55989]
gi|300418500|gb|EFK01811.1| THUMP domain protein [Escherichia coli MS 182-1]
gi|300846175|gb|EFK73935.1| THUMP domain protein [Escherichia coli MS 78-1]
gi|324117187|gb|EGC11095.1| THUMP domain-containing protein [Escherichia coli E1167]
gi|332342392|gb|AEE55726.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|340735371|gb|EGR64429.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O104:H4 str.
01-09591]
gi|345363771|gb|EGW95912.1| hypothetical protein ECSTECDG1313_1575 [Escherichia coli
STEC_DG131-3]
gi|354856739|gb|EHF17197.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 04-8351]
gi|354857932|gb|EHF18385.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. C227-11]
gi|354864700|gb|EHF25129.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. C236-11]
gi|354875070|gb|EHF35436.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 09-7901]
gi|354878973|gb|EHF39320.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-4404]
gi|354882765|gb|EHF43087.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-3677]
gi|354884387|gb|EHF44700.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-4522]
gi|354887444|gb|EHF47719.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-4623]
gi|354900639|gb|EHF60773.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|354903784|gb|EHF63884.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|354906147|gb|EHF66229.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|354917064|gb|EHF77034.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|354921125|gb|EHF81050.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|371595949|gb|EHN84793.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
H494]
gi|378242713|gb|EHY02665.1| 23S rRNA methyltransferase [Escherichia coli DEC15A]
gi|378250179|gb|EHY10087.1| 23S rRNA methyltransferase [Escherichia coli DEC15B]
gi|378251227|gb|EHY11128.1| 23S rRNA methyltransferase [Escherichia coli DEC15C]
gi|378256975|gb|EHY16820.1| 23S rRNA methyltransferase [Escherichia coli DEC15D]
gi|378260821|gb|EHY20621.1| 23S rRNA methyltransferase [Escherichia coli DEC15E]
gi|386149106|gb|EIG95538.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
97.0246]
gi|406778559|gb|AFS57983.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407055142|gb|AFS75193.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O104:H4 str.
2011C-3493]
gi|407064459|gb|AFS85506.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408458994|gb|EKJ82778.1| THUMP domain protein [Escherichia coli AD30]
gi|429350083|gb|EKY86818.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-02030]
gi|429350579|gb|EKY87307.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429351173|gb|EKY87894.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-02092]
gi|429365451|gb|EKZ02064.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-02093]
gi|429366402|gb|EKZ03005.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-02281]
gi|429368965|gb|EKZ05548.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-02318]
gi|429381372|gb|EKZ17859.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-02913]
gi|429382340|gb|EKZ18805.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-03439]
gi|429383388|gb|EKZ19848.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-03943]
gi|429395606|gb|EKZ31972.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. 11-04080]
gi|429396820|gb|EKZ33168.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429397698|gb|EKZ34044.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429409426|gb|EKZ45656.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429417886|gb|EKZ54033.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429421555|gb|EKZ57676.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429423295|gb|EKZ59403.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429427297|gb|EKZ63382.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429434179|gb|EKZ70208.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429438166|gb|EKZ74160.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429443522|gb|EKZ79474.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429448970|gb|EKZ84873.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec12-0466]
gi|429455200|gb|EKZ91057.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
O104:H4 str. Ec11-9941]
gi|431312850|gb|ELG00839.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE48]
gi|431412912|gb|ELG95711.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE154]
gi|449321079|gb|EMD11095.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O08]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|420123533|ref|ZP_14632420.1| 23S rRNA m(2)G2445 methyltransferase, partial [Escherichia coli
O26:H11 str. CVM10030]
gi|394416775|gb|EJE90546.1| 23S rRNA m(2)G2445 methyltransferase, partial [Escherichia coli
O26:H11 str. CVM10030]
Length = 675
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|345879859|ref|ZP_08831424.1| hypothetical protein HMPREF9431_00088 [Prevotella oulorum F0390]
gi|343917866|gb|EGV28643.1| hypothetical protein HMPREF9431_00088 [Prevotella oulorum F0390]
Length = 497
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 73/175 (41%), Gaps = 33/175 (18%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ I ++A + L + SLHRR + ++ L +A M+ ++S F+D
Sbjct: 139 DIRLNIHIAEDQATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMILMSSWKADTDFID 198
Query: 318 PMCGGGTIPVECSL----------SYPHTFFVCGDINEKLV------LKTQANVLH---- 357
PMCG GT+ +E +L F D N++L + + H
Sbjct: 199 PMCGSGTLLIEAALIARNINPGVFRKAFAFEKWPDFNQELFDTIYNDDSQERDFAHHIYG 258
Query: 358 --------NSGNLNRELKVSPLVCNVRQLCF----KPACVDGIVTDLPFGKRVGS 400
N+ LN + V Q F KPA I+T+ P+G+R+ +
Sbjct: 259 YDVDMKAVNTARLNVKAAGLSQTVTVEQQDFKDFKKPAEKSIIMTNPPYGERIST 313
>gi|433197546|ref|ZP_20381467.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE94]
gi|431724620|gb|ELJ88537.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE94]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|429065625|ref|ZP_19129464.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.0672]
gi|427336273|gb|EKW97252.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.0672]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|26246969|ref|NP_753009.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli CFT073]
gi|215486066|ref|YP_002328497.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O127:H6 str.
E2348/69]
gi|218688784|ref|YP_002396996.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli ED1a]
gi|227884093|ref|ZP_04001898.1| N6-adenine-specific DNA methytransferase [Escherichia coli 83972]
gi|300978391|ref|ZP_07174242.1| THUMP domain protein [Escherichia coli MS 45-1]
gi|301047795|ref|ZP_07194848.1| THUMP domain protein [Escherichia coli MS 185-1]
gi|312968993|ref|ZP_07783200.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|386628481|ref|YP_006148201.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli str. 'clone
D i2']
gi|386633401|ref|YP_006153120.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli str. 'clone
D i14']
gi|386638288|ref|YP_006105086.1| putative oxidoreductase [Escherichia coli ABU 83972]
gi|417754842|ref|ZP_12402933.1| 23S rRNA methyltransferase [Escherichia coli DEC2B]
gi|418996067|ref|ZP_13543674.1| 23S rRNA methyltransferase [Escherichia coli DEC1A]
gi|419001208|ref|ZP_13548759.1| 23S rRNA methyltransferase [Escherichia coli DEC1B]
gi|419006697|ref|ZP_13554150.1| 23S rRNA methyltransferase [Escherichia coli DEC1C]
gi|419012542|ref|ZP_13559905.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC1D]
gi|419017542|ref|ZP_13564861.1| 23S rRNA methyltransferase [Escherichia coli DEC1E]
gi|419023134|ref|ZP_13570375.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC2A]
gi|419028002|ref|ZP_13575194.1| 23S rRNA methyltransferase [Escherichia coli DEC2C]
gi|419033769|ref|ZP_13580865.1| 23S rRNA methyltransferase [Escherichia coli DEC2D]
gi|419038809|ref|ZP_13585862.1| 23S rRNA methyltransferase [Escherichia coli DEC2E]
gi|422366118|ref|ZP_16446593.1| THUMP domain protein [Escherichia coli MS 153-1]
gi|432410938|ref|ZP_19653619.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE39]
gi|432430986|ref|ZP_19673429.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE187]
gi|432435515|ref|ZP_19677914.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE188]
gi|432440321|ref|ZP_19682670.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE189]
gi|432445428|ref|ZP_19687734.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE191]
gi|432455801|ref|ZP_19698000.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE201]
gi|432494739|ref|ZP_19736555.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE214]
gi|432503578|ref|ZP_19745313.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE220]
gi|432523024|ref|ZP_19760161.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE230]
gi|432567952|ref|ZP_19804474.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE53]
gi|432591989|ref|ZP_19828316.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE60]
gi|432606756|ref|ZP_19842949.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE67]
gi|432650398|ref|ZP_19886158.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE87]
gi|432782822|ref|ZP_20017006.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE63]
gi|432801262|ref|ZP_20035246.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE84]
gi|432843312|ref|ZP_20076577.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE141]
gi|432994667|ref|ZP_20183281.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE218]
gi|432999085|ref|ZP_20187623.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE223]
gi|433013159|ref|ZP_20201533.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE104]
gi|433022796|ref|ZP_20210808.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE106]
gi|433057230|ref|ZP_20244312.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE124]
gi|433114822|ref|ZP_20300635.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE153]
gi|433124485|ref|ZP_20310070.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE160]
gi|433138545|ref|ZP_20323827.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE167]
gi|433148328|ref|ZP_20333391.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE174]
gi|433207055|ref|ZP_20390750.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE97]
gi|433211807|ref|ZP_20395418.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE99]
gi|433322214|ref|ZP_20399698.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli J96]
gi|442606491|ref|ZP_21021291.1| 23S rRNA (guanine-N-2-)-methyltransferase rlmL EC 2.1.1.-)
[Escherichia coli Nissle 1917]
gi|81846697|sp|Q8FJ88.1|RLMKL_ECOL6 RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|26107369|gb|AAN79552.1|AE016758_156 Hypothetical protein ycbY [Escherichia coli CFT073]
gi|215264138|emb|CAS08482.1| predicted methyltransferase [Escherichia coli O127:H6 str.
E2348/69]
gi|218426348|emb|CAR07173.1| putative conserved AdoMet-dependent methyltransferase with RNA
interaction domain [Escherichia coli ED1a]
gi|227838845|gb|EEJ49311.1| N6-adenine-specific DNA methytransferase [Escherichia coli 83972]
gi|300300327|gb|EFJ56712.1| THUMP domain protein [Escherichia coli MS 185-1]
gi|300409679|gb|EFJ93217.1| THUMP domain protein [Escherichia coli MS 45-1]
gi|307552780|gb|ADN45555.1| putative oxidoreductase [Escherichia coli ABU 83972]
gi|312286395|gb|EFR14308.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|315291202|gb|EFU50562.1| THUMP domain protein [Escherichia coli MS 153-1]
gi|355419380|gb|AER83577.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli str. 'clone
D i2']
gi|355424300|gb|AER88496.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli str. 'clone
D i14']
gi|377848057|gb|EHU13054.1| 23S rRNA methyltransferase [Escherichia coli DEC1A]
gi|377849773|gb|EHU14742.1| 23S rRNA methyltransferase [Escherichia coli DEC1C]
gi|377852556|gb|EHU17475.1| 23S rRNA methyltransferase [Escherichia coli DEC1B]
gi|377861860|gb|EHU26676.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC1D]
gi|377865998|gb|EHU30788.1| 23S rRNA methyltransferase [Escherichia coli DEC1E]
gi|377868144|gb|EHU32893.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC2A]
gi|377878285|gb|EHU42873.1| 23S rRNA methyltransferase [Escherichia coli DEC2B]
gi|377882946|gb|EHU47477.1| 23S rRNA methyltransferase [Escherichia coli DEC2D]
gi|377884129|gb|EHU48646.1| 23S rRNA methyltransferase [Escherichia coli DEC2C]
gi|377897270|gb|EHU61653.1| 23S rRNA methyltransferase [Escherichia coli DEC2E]
gi|430937436|gb|ELC57691.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE39]
gi|430955426|gb|ELC74209.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE187]
gi|430965843|gb|ELC83252.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE188]
gi|430968386|gb|ELC85612.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE189]
gi|430975270|gb|ELC92172.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE191]
gi|430984528|gb|ELD01151.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE201]
gi|431027344|gb|ELD40407.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE214]
gi|431041624|gb|ELD52124.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE220]
gi|431054334|gb|ELD63915.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE230]
gi|431102093|gb|ELE06998.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE53]
gi|431131905|gb|ELE33921.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE60]
gi|431140208|gb|ELE41985.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE67]
gi|431192954|gb|ELE92298.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE87]
gi|431331221|gb|ELG18484.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE63]
gi|431350208|gb|ELG37026.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE84]
gi|431396778|gb|ELG80245.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE141]
gi|431508880|gb|ELH87151.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE218]
gi|431513425|gb|ELH91508.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE223]
gi|431534290|gb|ELI10774.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE104]
gi|431539533|gb|ELI15284.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE106]
gi|431573350|gb|ELI46155.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE124]
gi|431636256|gb|ELJ04414.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE153]
gi|431648940|gb|ELJ16307.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE160]
gi|431664027|gb|ELJ30769.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE167]
gi|431676054|gb|ELJ42178.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE174]
gi|431732271|gb|ELJ95727.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE97]
gi|431735752|gb|ELJ99098.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE99]
gi|432349143|gb|ELL43573.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli J96]
gi|441712567|emb|CCQ07268.1| 23S rRNA (guanine-N-2-)-methyltransferase rlmL [Escherichia coli
Nissle 1917]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|219852897|ref|YP_002467329.1| RNA methylase [Methanosphaerula palustris E1-9c]
gi|219547156|gb|ACL17606.1| putative RNA methylase [Methanosphaerula palustris E1-9c]
Length = 318
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 14/155 (9%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F+ + P +A +V L+ PG++ DP CG G +E L + D + +++
Sbjct: 155 FHPGVMMPRMARTLVNLSLAEPGEILYDPFCGTGGTMLEADLIGIQAYG--SDTDRAMLI 212
Query: 350 KTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNF-LLY 408
++ N L +G L + P+ K A VD +V+DLP+G+ V + + LY
Sbjct: 213 GSRQN-LPKAGVLAGDATCLPV---------KSAAVDAVVSDLPYGQSVPIIAPSLEKLY 262
Query: 409 RLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHIT 443
L EI +I++P RA+++T LI ++T
Sbjct: 263 SGSLEEIRRILKPG-RRAVIVTHQPIGLIAQEYLT 296
>gi|417689015|ref|ZP_12338252.1| hypothetical protein SB521682_1270 [Shigella boydii 5216-82]
gi|332092513|gb|EGI97586.1| hypothetical protein SB521682_1270 [Shigella boydii 5216-82]
Length = 702
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDTPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPMLDPMCGSGTLLIEAAM 209
>gi|298380031|ref|ZP_06989636.1| RNA methylase [Escherichia coli FVEC1302]
gi|298279729|gb|EFI21237.1| RNA methylase [Escherichia coli FVEC1302]
Length = 689
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|296103042|ref|YP_003613188.1| 23S rRNA m(2)G2445 methyltransferase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295057501|gb|ADF62239.1| 23S rRNA m(2)G2445 methyltransferase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 702
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+ + + A + L ++ LH R + + +K T+A +V + +P
Sbjct: 130 VDRENPDLRINVWLNGDTASISLDLSGAGLHLRGYRDRTGMAPIKETLAAAIVMRSGWLP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|398304141|ref|ZP_10507727.1| methylase with RNA interaction domain [Bacillus vallismortis
DV1-F-3]
Length = 385
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 224 CNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSL 282
C R+ K + +E + K ND W+ + +Y ++I+L ++A + L + T L
Sbjct: 109 CQRIVKKAI--VEKLKQQSAKAND---WIEETGAEYKVEISL--LKDQAVLTLDSSGTGL 161
Query: 283 HRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
H+R V+ +K T+A +V+L + P F+DP CG GTI +E +L
Sbjct: 162 HKRGYRVDQGGAPIKETLAAALVQLTNWTPDRPFVDPFCGSGTIAIEAAL 211
>gi|317967960|ref|ZP_07969350.1| RNA methylase family protein [Synechococcus sp. CB0205]
Length = 392
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 100/245 (40%), Gaps = 47/245 (19%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VDL++ D+ +++ + +EA + L + SLHRR + LK +A ++RL
Sbjct: 148 VDLEEPDLSLHVHLNRHEARLSLDGSGGSLHRRGYRSAMGLAPLKENLAAGLIRLTGWDG 207
Query: 312 GDVFLDPMCGGGTIPVECS---------LSYPHTFFVCGDINEK---------------- 346
+DP+CG GT+ +E + L P D + +
Sbjct: 208 SIPLVDPLCGSGTLLIEAASWALSQAPGLHRPFALEGWADFDTELWDEEQRRAQSREQPL 267
Query: 347 ----LVLKTQAN------VLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK 396
L+L + N HN+ ++ + R L P+ +V + P+G+
Sbjct: 268 STLPLLLGCEQNASVAEQARHNAQAAGLAEAITLQTGDFRTLAL-PSGPGVLVCNPPYGE 326
Query: 397 RVGSKSNNFLLYRLFLIEIGKIVRPQI-GRAILLTSDRKHLIQALHITSALWKCRKQIKI 455
R+G + LY ++G +V+ + G ++ L S L AL + K ++I I
Sbjct: 327 RIGERDELEQLY----ADLGAMVKERCSGWSLWLLSGNPELTGALRM-----KASRRIPI 377
Query: 456 NMSGM 460
+ G+
Sbjct: 378 SNGGI 382
>gi|345882910|ref|ZP_08834362.1| hypothetical protein HMPREF0666_00538 [Prevotella sp. C561]
gi|345044247|gb|EGW48290.1| hypothetical protein HMPREF0666_00538 [Prevotella sp. C561]
Length = 515
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ + + A + L + SLHRR + ++ L +A M+ + F+D
Sbjct: 138 DIRLNIHVAEDNATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMILMTGWKGETDFID 197
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+PVE +L
Sbjct: 198 PMCGSGTLPVEAAL 211
>gi|308272495|emb|CBX29099.1| hypothetical protein N47_J00800 [uncultured Desulfobacterium sp.]
Length = 392
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 93/229 (40%), Gaps = 58/229 (25%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
V + + DI +NL IR +EA + L + +LH+R E ++ ++ T+A ++R +
Sbjct: 149 VSVKNPDILLNLHIRNDEAVISLDTSGAALHKRGYREDTVSAPMQETVAAAIIRFSEWDG 208
Query: 312 GDVFLDPMCGGGTIPVECSLSY-------------------------------------- 333
DPMCG GT+ E + Y
Sbjct: 209 FVPLYDPMCGSGTLLCEALMQYSNIPAGVFRKQFGFEFLPDFDAAIWKKVKKEADGRIRE 268
Query: 334 -PHTFFVCGDINEKLVLKTQANV--LHNSGNLNRELKVSPLVCNVRQLCFKPACVDG-IV 389
P D++ + V ++AN+ LH N++ E + R+L PA + IV
Sbjct: 269 LPKGLIAGSDVSVQAVRASKANLMGLHYGNNVSVE------KADFRKL---PALENHVIV 319
Query: 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQI--GRAILLTSDRKHL 436
T+ P+G R+G + +F IG ++ + A + DRK++
Sbjct: 320 TNPPYGIRMGGDED----LEMFFKNIGDFLKQKCKGSTAFVYFGDRKYI 364
>gi|296333046|ref|ZP_06875503.1| putative methylase with RNA interaction domain [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305674850|ref|YP_003866522.1| methylase with RNA interaction domain [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296149897|gb|EFG90789.1| putative methylase with RNA interaction domain [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305413094|gb|ADM38213.1| putative methylase with RNA interaction domain [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 385
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 224 CNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSL 282
C R+ K + +E + K ND W+ + +Y ++I+L ++A + L + T L
Sbjct: 109 CQRIVKKAI--VEKLKLQSSKAND---WIEETGAEYKVEISL--LKDQAVITLDSSGTGL 161
Query: 283 HRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
H+R V+ +K T+A +V+L + P F+DP CG GTI +E +L
Sbjct: 162 HKRGYRVDQGGAPIKETLAAALVQLTNWTPDRPFVDPFCGSGTIAIEAAL 211
>gi|415877687|ref|ZP_11543760.1| putative methylase [Escherichia coli MS 79-10]
gi|342927788|gb|EGU96510.1| putative methylase [Escherichia coli MS 79-10]
Length = 642
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|331641476|ref|ZP_08342611.1| putative oxidoreductase, partial [Escherichia coli H736]
gi|331038274|gb|EGI10494.1| putative oxidoreductase [Escherichia coli H736]
Length = 287
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|366158457|ref|ZP_09458319.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia sp. TW09308]
gi|432371696|ref|ZP_19614747.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE11]
gi|430898839|gb|ELC20970.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE11]
Length = 702
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDTPDIRVNVWLNKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|325270912|ref|ZP_08137499.1| putative N6-adenine-specific DNA methylase [Prevotella multiformis
DSM 16608]
gi|324986709|gb|EGC18705.1| putative N6-adenine-specific DNA methylase [Prevotella multiformis
DSM 16608]
Length = 504
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ + + A + L + SLHRR + ++ L +A M+ + F+D
Sbjct: 138 DIRLNIHVAEDNATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMILMTGWEGETDFID 197
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+PVE +L
Sbjct: 198 PMCGSGTLPVEAAL 211
>gi|310829599|ref|YP_003961956.1| putative RNA methylase [Eubacterium limosum KIST612]
gi|308741333|gb|ADO38993.1| putative RNA methylase [Eubacterium limosum KIST612]
Length = 388
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I++QI +E + + + + L++R ++ N LK TIA +V L+ P VFLDP+C
Sbjct: 142 IHIQILKDEVVLSIDTSGSGLNKRGYRQYGNEAPLKETIAAALVYLSRWQPHRVFLDPLC 201
Query: 321 GGGTIPVECSL 331
G GTI +E +L
Sbjct: 202 GSGTIVIEAAL 212
>gi|328773074|gb|EGF83111.1| hypothetical protein BATDEDRAFT_84644 [Batrachochytrium
dendrobatidis JAM81]
Length = 449
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 11/130 (8%)
Query: 277 VTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHT 336
VTQ L +R + T++ ++ M A PG LDP G G+ V CS +T
Sbjct: 179 VTQYDLKKRGYL--GTTSMDAELSLVMANQALAQPGSFILDPFVGTGSFLVSCSHFGAYT 236
Query: 337 FFVCGDINEKLVLKTQANVLHNSGNLNREL----KVSPLVCNVRQLCF-KPACVDGIVTD 391
F DI+ + + T + N+++ + + L+C++ + K A D IV D
Sbjct: 237 F--GSDIDGRQIRGTMGKSIET--NIDQYMLHSRVLGSLICDIAHHPWRKGAWWDAIVCD 292
Query: 392 LPFGKRVGSK 401
P+G R G+K
Sbjct: 293 PPYGVRAGAK 302
>gi|88803231|ref|ZP_01118757.1| putative N6-adenine-specific DNA methylase [Polaribacter irgensii
23-P]
gi|88780797|gb|EAR11976.1| putative N6-adenine-specific DNA methylase [Polaribacter irgensii
23-P]
Length = 405
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VDL D+ I++ I+ + V L + SLH+R NI + +A MV L+
Sbjct: 134 VDLKYPDVKIHIHIQKDWLTVSLDSSGDSLHKRGYRTATNIAPINEVLAAGMVLLSGYTG 193
Query: 312 GDVFLDPMCGGGTIPVECSL 331
+ F+DPMCG GTI +E ++
Sbjct: 194 EENFIDPMCGSGTILIEAAM 213
>gi|331646207|ref|ZP_08347310.1| putative oxidoreductase [Escherichia coli M605]
gi|417661503|ref|ZP_12311084.1| 23S rRNA (guanine-N-2-) -methyltransferase rlmL [Escherichia coli
AA86]
gi|330910721|gb|EGH39231.1| 23S rRNA (guanine-N-2-) -methyltransferase rlmL [Escherichia coli
AA86]
gi|331044959|gb|EGI17086.1| putative oxidoreductase [Escherichia coli M605]
Length = 702
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETANIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|399576128|ref|ZP_10769885.1| putative RNA methylase [Halogranum salarium B-1]
gi|399238839|gb|EJN59766.1| putative RNA methylase [Halogranum salarium B-1]
Length = 347
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 102/246 (41%), Gaps = 22/246 (8%)
Query: 232 VTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQT--SLHRRNIVE 289
V++ ++ER G L D F VDLDD D + + + +G ++ R +
Sbjct: 117 VSTQDAERTLGSVLVDRGF-SVDLDDPDHVLRVLFSDDVCILGWLDVESIRDFGDRKPTD 175
Query: 290 ---FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEK 346
F ++ P A V +A PG LDPMCG G + +E +L V D K
Sbjct: 176 RPFFQPGSMAPLDARAFVNIAGAGPGKTVLDPMCGTGGVLLEAALVGAR--VVGADAQWK 233
Query: 347 LVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFL 406
+ ++ N+ L E + + L + VDG+V D P+G++ SK
Sbjct: 234 MARGSRTNL----AELTPETTWDVVRGDATSLALQDDSVDGVVFDAPYGRQ--SKIARHD 287
Query: 407 LYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRK--QIKINMSGMKSFV 464
L L + + R + ++ +DR A+ A W + Q +++ S + +V
Sbjct: 288 LEDLVAGALSEAAR--VAPRAVVVADRSWADAAV---DAGWNVERLFQRRVHRS-LTRYV 341
Query: 465 FILNRT 470
+L R
Sbjct: 342 HVLTRA 347
>gi|425415740|ref|ZP_18797360.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FRIK523]
gi|408349822|gb|EKJ63744.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
FRIK523]
Length = 582
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|73668857|ref|YP_304872.1| N2-methylguanosine tRNA methyltransferase [Methanosarcina barkeri
str. Fusaro]
gi|72396019|gb|AAZ70292.1| N2-methylguanosine tRNA methyltransferase [Methanosarcina barkeri
str. Fusaro]
Length = 355
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 11/145 (7%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F+ L P +A + L+ PG++F+DP CG I +E L + D EKLV
Sbjct: 177 FHPGVLMPRVARALANLSGIKPGELFMDPFCGTAGIIIEAGLMGARVIGI--DAQEKLVK 234
Query: 350 KTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNF-LLY 408
N+ + L+ L + + ++ K ++ +VTD P+G+ + LY
Sbjct: 235 GAHMNL--EAFKLDYAL----MEGDACRVPLKEETINAVVTDPPYGRSAAILGGSLEELY 288
Query: 409 RLFLIEIGKIVRPQIGRAILLTSDR 433
L EI ++++P G ++ SD+
Sbjct: 289 SCALSEIERVLKP--GGIAVVVSDK 311
>gi|415837042|ref|ZP_11519292.1| hypothetical protein ECRN5871_1001 [Escherichia coli RN587/1]
gi|417282963|ref|ZP_12070261.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
3003]
gi|425276885|ref|ZP_18668210.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
ARS4.2123]
gi|323190762|gb|EFZ76031.1| hypothetical protein ECRN5871_1001 [Escherichia coli RN587/1]
gi|386244168|gb|EII85900.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
3003]
gi|408205950|gb|EKI30773.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
ARS4.2123]
Length = 702
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETANIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|386618544|ref|YP_006138124.1| 23S rRNA -methyltransferase [Escherichia coli NA114]
gi|387828915|ref|YP_003348852.1| putative oxidoreductase [Escherichia coli SE15]
gi|425305748|ref|ZP_18695459.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
N1]
gi|432421058|ref|ZP_19663613.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE178]
gi|432499202|ref|ZP_19740974.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE216]
gi|432558022|ref|ZP_19794710.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE49]
gi|432693689|ref|ZP_19928900.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE162]
gi|432709864|ref|ZP_19944928.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE6]
gi|432918159|ref|ZP_20122564.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE173]
gi|432925449|ref|ZP_20127478.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE175]
gi|432980410|ref|ZP_20169188.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE211]
gi|433095833|ref|ZP_20282043.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE139]
gi|433105054|ref|ZP_20291070.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE148]
gi|281178072|dbj|BAI54402.1| putative oxidoreductase [Escherichia coli SE15]
gi|333969045|gb|AEG35850.1| 23S rRNA -methyltransferase [Escherichia coli NA114]
gi|408228641|gb|EKI52168.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
N1]
gi|430946675|gb|ELC66598.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE178]
gi|431031211|gb|ELD44109.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE216]
gi|431093528|gb|ELD99193.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE49]
gi|431236355|gb|ELF31568.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE162]
gi|431250433|gb|ELF44492.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE6]
gi|431446340|gb|ELH27089.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE173]
gi|431448170|gb|ELH28888.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE175]
gi|431493305|gb|ELH72899.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE211]
gi|431618785|gb|ELI87719.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE139]
gi|431633099|gb|ELJ01381.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE148]
Length = 702
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETANIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|357042853|ref|ZP_09104555.1| hypothetical protein HMPREF9138_01027 [Prevotella histicola F0411]
gi|355369046|gb|EHG16452.1| hypothetical protein HMPREF9138_01027 [Prevotella histicola F0411]
Length = 510
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
+ + + DI +N+ + + A + L + SLHRR + ++ L +A M+ +
Sbjct: 132 ISVSNPDIRLNIHVAEDNATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMILMTGWKG 191
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GT+P+E +L
Sbjct: 192 ETDFIDPMCGSGTLPIEAAL 211
>gi|257052325|ref|YP_003130158.1| RNA methylase [Halorhabdus utahensis DSM 12940]
gi|256691088|gb|ACV11425.1| putative RNA methylase [Halorhabdus utahensis DSM 12940]
Length = 343
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 19/183 (10%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F ++ P +A + A PG LDPMCG G + +E S V D EK+V
Sbjct: 176 FQPGSMDPALARALGNAAGARPGARVLDPMCGTGGLLLEASRVGATVVGV--DALEKMVR 233
Query: 350 KTQANVLHNSGNLNRELKVSPLVC--NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLL 407
T+ N++ + E LVC + R+L F D +V D P+G++ +++ +
Sbjct: 234 GTRENLVAAGAD---EF----LVCRGDARRLPFGTDAFDAVVVDAPYGRQTKISADSLAV 286
Query: 408 YRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINM-SGMKSFVFI 466
+ + V P RA+++ DR A A W Q + + + F+ +
Sbjct: 287 LLEDALAQARRVAP---RAVVV-GDRPWAAVARE---AGWTVSAQFQRRVHRSLDRFIHV 339
Query: 467 LNR 469
L+R
Sbjct: 340 LDR 342
>gi|428208805|ref|YP_007093158.1| rRNA (guanine-N(2)-)-methyltransferase [Chroococcidiopsis thermalis
PCC 7203]
gi|428010726|gb|AFY89289.1| rRNA (guanine-N(2)-)-methyltransferase [Chroococcidiopsis thermalis
PCC 7203]
Length = 383
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 18/132 (13%)
Query: 201 CSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDI 260
C+ NQK N T+ T +V V + R FG + + + D+
Sbjct: 104 CTGGNQKLNHTH---------FTALQVKNAIVD--QQRRKFGQRST------IAPQNPDL 146
Query: 261 DINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPM 319
+N+ I+ + L + TSLHRR LK T+A ++ +A FLDP+
Sbjct: 147 LVNVHIQQQRCILSLDSSGTSLHRRGYHPAMGAAPLKETLAAALLEIADWNTSLPFLDPL 206
Query: 320 CGGGTIPVECSL 331
CG GT+P+E L
Sbjct: 207 CGSGTLPIEAGL 218
>gi|403381285|ref|ZP_10923342.1| putative RNA methylase [Paenibacillus sp. JC66]
Length = 369
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 49/191 (25%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I + + ++ A + L T SLH+R + LK T+A +M+ L+ P DP C
Sbjct: 123 IEISLLHDLATLTLDTTGPSLHKRGYRKLVTEAPLKETLAASMIMLSRWRPERPLYDPFC 182
Query: 321 GGGTIPVECSL-----------SYPHTFF---------------------------VCGD 342
G GTIPVE ++ S+P + + D
Sbjct: 183 GSGTIPVEAAMIGWNLAPGLRRSFPAEHWPVMGSSLWEDAREEAYDLVKDDVPLEIIGSD 242
Query: 343 INEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-FKPACVDG-IVTDLPFGKRVGS 400
I+EK + +A+ S +EL+ +VR + KP G I+T+ P+G+R+G
Sbjct: 243 IDEKAIEVAKASA--RSAGFAKELQ-----WHVRSVSDIKPRGDYGCIITNPPYGERLGD 295
Query: 401 KSN-NFLLYRL 410
+++ LL RL
Sbjct: 296 RADVEKLLRRL 306
>gi|300709794|ref|YP_003735608.1| hypothetical protein HacjB3_02115 [Halalkalicoccus jeotgali B3]
gi|448297436|ref|ZP_21487482.1| RNA methylase [Halalkalicoccus jeotgali B3]
gi|299123477|gb|ADJ13816.1| hypothetical protein HacjB3_02115 [Halalkalicoccus jeotgali B3]
gi|445579745|gb|ELY34138.1| RNA methylase [Halalkalicoccus jeotgali B3]
Length = 318
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 20/175 (11%)
Query: 231 TVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE- 289
V + +ER G L + F VDL++ D ++ + +G + RR+
Sbjct: 92 AVDTQRAERELGSVLVERGF-SVDLEEPDHELRAVFSGDTCALGWLAAAS---RRDFAAR 147
Query: 290 -------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGD 342
F ++ P +A + +A PG LDPMCG G + VE L+ + D
Sbjct: 148 APTDKPFFQPGSMDPLLARAIANIAGAGPGATILDPMCGTGGVLVEAGLAGARV--IGAD 205
Query: 343 INEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397
K+ + N+ H +++ + ++ + +DG+V D P+G++
Sbjct: 206 AQWKMTHGARENLAHY------DVEFDLFRGDATRIPLRDGTIDGVVFDAPYGRQ 254
>gi|432893673|ref|ZP_20105685.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE165]
gi|431424653|gb|ELH06749.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE165]
Length = 702
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETANIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|383177598|ref|YP_005455603.1| 23S rRNA m(2)G2445 methyltransferase [Shigella sonnei 53G]
gi|415850457|ref|ZP_11527332.1| hypothetical protein SS53G_4112 [Shigella sonnei 53G]
gi|418263469|ref|ZP_12884438.1| 23S rRNA methyltransferase [Shigella sonnei str. Moseley]
gi|323165428|gb|EFZ51215.1| hypothetical protein SS53G_4112 [Shigella sonnei 53G]
gi|397902596|gb|EJL18909.1| 23S rRNA methyltransferase [Shigella sonnei str. Moseley]
Length = 702
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRTGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|148240456|ref|YP_001225843.1| N6-adenine-specific DNA methylase [Synechococcus sp. WH 7803]
gi|147848995|emb|CAK24546.1| Predicted N6-adenine-specific DNA methylase [Synechococcus sp. WH
7803]
Length = 390
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 47/245 (19%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+DL++ D++++L + EA + L + SLHRR LK +A ++RL+
Sbjct: 146 IDLEEPDLNLHLHLHRGEATLSLDGSGGSLHRRGYRAAMGAAPLKENLAAGLIRLSGWDG 205
Query: 312 GDVFLDPMCGGGTIPVEC---SLSYPHTF---FVCGDINEKLVLKTQANVLHNSGNLNRE 365
+DP+CG GT+ +E +L P F + + + A G RE
Sbjct: 206 TTPLVDPLCGSGTLLIEAAAMALQLPAGLDRVFALESWADFNLDQWNAERQRAQGRACRE 265
Query: 366 LKVSPLV--------------CNVRQLCFK---------------PACVDGIVTDLPFGK 396
K+ PL+ NV+ + P +V + P+G+
Sbjct: 266 RKL-PLIQGFEADSSIADQARANVQAAGLEHSVEIKTGSFHNFALPQGPGTLVCNPPYGE 324
Query: 397 RVGSKSNNFLLYRLFLIEIGKIVRPQI-GRAILLTSDRKHLIQALHITSALWKCRKQIKI 455
R+G+ S+ LY ++G+ + G A+ + S L AL + K ++I I
Sbjct: 325 RIGAGSDLESLYS----DLGRYAKEHASGWALWVLSGNPQLTGALRM-----KATRRIPI 375
Query: 456 NMSGM 460
+ G+
Sbjct: 376 SNGGI 380
>gi|308186290|ref|YP_003930421.1| hypothetical protein Pvag_0770 [Pantoea vagans C9-1]
gi|308056800|gb|ADO08972.1| UPF0020/UPF0064 protein ycbY [Pantoea vagans C9-1]
Length = 704
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD + DI +N+ + + A + L ++ TSLH+R + LK T+A +V + P
Sbjct: 130 VDREQADIRVNVWLNDDRASIALDLSGTSLHQRGYRQQTGQAPLKETLAAAIVLRSGWEP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
+DPMCG GT+ +E +L
Sbjct: 190 TTPLIDPMCGSGTLLIEAAL 209
>gi|74311505|ref|YP_309924.1| 23S rRNA m(2)G2445 methyltransferase [Shigella sonnei Ss046]
gi|414575230|ref|ZP_11432436.1| ribosomal RNA large subunit methyltransferase L [Shigella sonnei
3233-85]
gi|420357728|ref|ZP_14858733.1| ribosomal RNA large subunit methyltransferase L [Shigella sonnei
3226-85]
gi|420362601|ref|ZP_14863516.1| 23S rRNA methyltransferase [Shigella sonnei 4822-66]
gi|123617569|sp|Q3Z3H3.1|RLMKL_SHISS RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|73854982|gb|AAZ87689.1| putative oxidoreductase [Shigella sonnei Ss046]
gi|391286723|gb|EIQ45258.1| ribosomal RNA large subunit methyltransferase L [Shigella sonnei
3226-85]
gi|391288179|gb|EIQ46688.1| ribosomal RNA large subunit methyltransferase L [Shigella sonnei
3233-85]
gi|391295894|gb|EIQ54016.1| 23S rRNA methyltransferase [Shigella sonnei 4822-66]
Length = 702
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRTGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|166363694|ref|YP_001655967.1| putative DNA methylase [Microcystis aeruginosa NIES-843]
gi|166086067|dbj|BAG00775.1| putative DNA methylase [Microcystis aeruginosa NIES-843]
Length = 375
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 252 LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPI 310
VD ++ D+ IN I N + L + SLHRR + LK ++A +V L++
Sbjct: 130 FVDTENPDLQINAHIEKNHCVLSLDSSGHSLHRRGYHRAMGVAPLKESLAAALVELSAWQ 189
Query: 311 PGDVFLDPMCGGGTIPVECSL 331
LDP CG GTI +E +L
Sbjct: 190 DDMALLDPFCGSGTIVIEATL 210
>gi|448488859|ref|ZP_21607458.1| RNA methylase [Halorubrum californiensis DSM 19288]
gi|445695480|gb|ELZ47583.1| RNA methylase [Halorubrum californiensis DSM 19288]
Length = 369
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 9/145 (6%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F ++ P A LA PG LDPMCG G +P+E + V D K+V
Sbjct: 181 FQPGSMAPADARAYANLAGAAPGRTLLDPMCGTGGLPLEAGIV--GADVVACDAQAKMVR 238
Query: 350 KTQANVL-HNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLY 408
+ N H + + + E V+ + L F VDG+ D P+G++ SK L
Sbjct: 239 GARENFREHLNDDPSTEWHVA--RGDATALPFSDDAVDGVAFDAPYGRQ--SKIARHELA 294
Query: 409 RLFLIEIGKIVRPQIGRAILLTSDR 433
L + + R + +L +DR
Sbjct: 295 DLVAGALAETAR--VAPRAVLVADR 317
>gi|317503575|ref|ZP_07961597.1| N6-adenine-specific DNA methylase [Prevotella salivae DSM 15606]
gi|315665317|gb|EFV04962.1| N6-adenine-specific DNA methylase [Prevotella salivae DSM 15606]
Length = 497
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDV-FL 316
DI +N+ I ++A + L + SLHRR + ++ L +A M+ L S GD F+
Sbjct: 139 DIRLNIHIAEDKATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMI-LMSGWKGDSDFI 197
Query: 317 DPMCGGGTIPVECSL 331
DPMCG GTI +E +L
Sbjct: 198 DPMCGSGTILIEAAL 212
>gi|417804333|ref|ZP_12451364.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O104:H4 str.
LB226692]
gi|340741197|gb|EGR75347.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O104:H4 str.
LB226692]
Length = 450
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|423332649|ref|ZP_17310431.1| conserved hypothetical protein [Lactobacillus reuteri ATCC 53608]
gi|337727767|emb|CCC02853.1| conserved hypothetical protein [Lactobacillus reuteri ATCC 53608]
Length = 384
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 51/182 (28%)
Query: 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN 354
LK +A +V LA P + F+DP+CG GTIP+E +L Y H + IN + + N
Sbjct: 174 LKENMAAALVMLAHWFPDNPFVDPVCGSGTIPIEAAL-YGHN--IAPGINRSFISEQWVN 230
Query: 355 VLHNS------------GNLNREL-------------------KVSPLVCNV--RQLCFK 381
++ + N + EL + + L ++ +QL K
Sbjct: 231 LVPDGLSDEVRDEADALANYDIELDIHGYDIDQNMIDIAQENSRAAGLTHDITFKQLAVK 290
Query: 382 ---PACVDG-IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLI 437
+ V+G IV + P+G+R+ K + LYR ++G++ RP LT+ K+++
Sbjct: 291 DWQTSKVNGVIVANPPYGERLSDKESVHELYR----QMGELYRP-------LTTWSKYIL 339
Query: 438 QA 439
A
Sbjct: 340 TA 341
>gi|333993769|ref|YP_004526382.1| putative RNA methylase family protein [Treponema azotonutricium
ZAS-9]
gi|333736429|gb|AEF82378.1| putative RNA methylase family [Treponema azotonutricium ZAS-9]
Length = 341
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 11/175 (6%)
Query: 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN 354
L P +A+ + RL++P D +DP CG G+IP + +P F DI++ + +
Sbjct: 171 LSPQLAWLLCRLSNPKHTDTVIDPFCGYGSIPGQRIKYFPLKKFYAFDIDKAPLAFAKKK 230
Query: 355 VLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIE 414
+ + E+K + + L A D I+TD P+G + L + +
Sbjct: 231 I---TAKQPCEIKQADIYSIFDVLPRGEA--DAIITDPPWGM---FRETEIPLQKFYDDM 282
Query: 415 IGKIVR--PQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFIL 467
+G R G A++LT+ ++ QA+ T A R I + +SG K+ VF+L
Sbjct: 283 VGIFSRLLKAGGLAVVLTAKQEEFRQAVDKTPAFSLIR-TIPVLVSGKKAAVFVL 336
>gi|416340548|ref|ZP_11675501.1| putative RNA methylase family UPF0020 [Escherichia coli EC4100B]
gi|320202345|gb|EFW76916.1| putative RNA methylase family UPF0020 [Escherichia coli EC4100B]
Length = 326
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|288802454|ref|ZP_06407893.1| putative N6-adenine-specific DNA methylase [Prevotella
melaninogenica D18]
gi|288334982|gb|EFC73418.1| putative N6-adenine-specific DNA methylase [Prevotella
melaninogenica D18]
Length = 504
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ + + A + L + SLHRR + ++ L +A M+ + F+D
Sbjct: 127 DIRLNIHVAEDNATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMILMTGWKGETDFID 186
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+P+E +L
Sbjct: 187 PMCGSGTLPIEAAL 200
>gi|302346496|ref|YP_003814794.1| THUMP domain protein [Prevotella melaninogenica ATCC 25845]
gi|302151061|gb|ADK97322.1| THUMP domain protein [Prevotella melaninogenica ATCC 25845]
Length = 515
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ + + A + L + SLHRR + ++ L +A M+ + F+D
Sbjct: 138 DIRLNIHVAEDNATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMILMTGWKGETDFID 197
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+P+E +L
Sbjct: 198 PMCGSGTLPIEAAL 211
>gi|170769246|ref|ZP_02903699.1| putative RNA methylase family UPF0020 [Escherichia albertii
TW07627]
gi|170121898|gb|EDS90829.1| putative RNA methylase family UPF0020 [Escherichia albertii
TW07627]
Length = 702
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L + LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDFSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|425467772|ref|ZP_18847051.1| putative enzyme [Microcystis aeruginosa PCC 9809]
gi|389829368|emb|CCI29371.1| putative enzyme [Microcystis aeruginosa PCC 9809]
Length = 375
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 252 LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPI 310
VD ++ D+ IN I N + L + SLHRR + LK ++A +V L++
Sbjct: 130 FVDTENPDLQINAHIEKNRCVLSLDSSGHSLHRRGYHRAMGVAPLKESLAAALVELSAWQ 189
Query: 311 PGDVFLDPMCGGGTIPVECSL 331
LDP CG GTI +E +L
Sbjct: 190 DDMALLDPFCGSGTIVIEATL 210
>gi|194468020|ref|ZP_03074006.1| putative RNA methylase [Lactobacillus reuteri 100-23]
gi|194452873|gb|EDX41771.1| putative RNA methylase [Lactobacillus reuteri 100-23]
Length = 384
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 51/182 (28%)
Query: 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN 354
LK +A +V LA P + F+DP+CG GTIP+E +L Y H + IN + + N
Sbjct: 174 LKENMAAALVMLAHWFPDNPFVDPVCGSGTIPIEAAL-YGHN--IAPGINRSFISEQWVN 230
Query: 355 VLHNS------------GNLNREL-------------------KVSPLVCNV--RQLCFK 381
++ + N + EL + + L ++ +QL K
Sbjct: 231 LVPDGLSDEVRDEADSLANYDIELDIHGYDIDQNMIDIAQENSRAAGLTHDITFKQLAVK 290
Query: 382 ---PACVDG-IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLI 437
+ V+G IV + P+G+R+ K + LYR ++G++ RP LT+ K+++
Sbjct: 291 DWQTSEVNGVIVANPPYGERLSDKESVHELYR----QMGELYRP-------LTTWSKYIL 339
Query: 438 QA 439
A
Sbjct: 340 TA 341
>gi|444968203|ref|ZP_21285668.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.1793]
gi|445044232|ref|ZP_21359558.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
3.4880]
gi|444585043|gb|ELV60630.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
99.1793]
gi|444665813|gb|ELW37912.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
3.4880]
Length = 702
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVIRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|150399897|ref|YP_001323664.1| putative RNA methylase [Methanococcus vannielii SB]
gi|150012600|gb|ABR55052.1| putative RNA methylase [Methanococcus vannielii SB]
Length = 364
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 21/198 (10%)
Query: 220 FRVTCNRVGKHTVT-SMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVT 278
F V +++ + V SME ER G + F V+L + + I + I N AYV + +
Sbjct: 121 FAVRVHKLDREKVAKSMEIERKMGSIIKSKTFSSVNLKNPEKTIKIVISDNLAYVSVVLE 180
Query: 279 QTSL--------HRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECS 330
+ + H R F+ + P +A MV L+ D+ LDP CG G +E
Sbjct: 181 KRDVEYFQNNRPHLR--AYFHPGCIMPKLARCMVNLSRINENDILLDPFCGTGGFLIEAG 238
Query: 331 LSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-----CFKPACV 385
L + + DI+E++V N+ N+ +L+++ +S N + + +
Sbjct: 239 LIGCNV--IGSDIDEQMVNGAILNL--NTYDLSKK-TISIKKWNAKNILDYLKSLNIEKI 293
Query: 386 DGIVTDLPFGKRVGSKSN 403
D +VTD P+G K +
Sbjct: 294 DAVVTDPPYGISTSKKGD 311
>gi|432946254|ref|ZP_20141883.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE196]
gi|433042458|ref|ZP_20229978.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE117]
gi|431461629|gb|ELH41896.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE196]
gi|431559237|gb|ELI32808.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE117]
Length = 702
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT +E ++
Sbjct: 190 GTPLLDPMCGSGTFLIEAAM 209
>gi|404493716|ref|YP_006717822.1| 23S rRNA m(2)G2445 methyltransferase [Pelobacter carbinolicus DSM
2380]
gi|123573834|sp|Q3A2U5.1|RLMKL_PELCD RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|77545750|gb|ABA89312.1| 23S rRNA (2-N-methyl-G2445)-methyltransferase, putative [Pelobacter
carbinolicus DSM 2380]
Length = 713
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYN-MVRLASP- 309
+DL+ DI +NL I ++A + L ++ SLHRR E + LK +A ++R P
Sbjct: 133 IDLERPDIRLNLHIDRDQATLSLDLSGDSLHRRGYRAEGVLAPLKENLAAAILLRAGWPD 192
Query: 310 --IPGDVFLDPMCGGGTIPVECSL 331
G +DPMCG GT+ +E +L
Sbjct: 193 VGARGGALVDPMCGSGTLVIEAAL 216
>gi|62822220|gb|AAY14769.1| unknown [Homo sapiens]
Length = 267
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 21/167 (12%)
Query: 150 NDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDL-------QNQELKEIDINSMCS 202
N+I+ K I I++ C+ E Q+ +E+ D Q +E + DI
Sbjct: 110 NEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRDFTTKSEKFQEEEFQN-DIEKAID 168
Query: 203 SQNQKTNFTNPEENLLKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDI 260
+ NQ N L FRV+C G T+ E + G + + W DL + +
Sbjct: 169 THNQ---------NDLTFRVSCRCSGTIGKAFTAQEVGKVIGIAIMKHFGWKADLRNPQL 219
Query: 261 DINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLA 307
+I + + + VG+PV + SL R ++ L+ TIA+ M LA
Sbjct: 220 EIFIHLNDIYSVVGIPVFRVSLASRAYIK--TAGLRSTIAWAMASLA 264
>gi|425472328|ref|ZP_18851179.1| putative enzyme [Microcystis aeruginosa PCC 9701]
gi|389881627|emb|CCI37845.1| putative enzyme [Microcystis aeruginosa PCC 9701]
Length = 375
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 252 LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPI 310
VD ++ D+ IN I N + L + SLHRR + LK ++A +V L++
Sbjct: 130 FVDTENPDLQINAHIEKNRCVLSLDSSGHSLHRRGYHRAMGVAPLKESLAAALVELSAWQ 189
Query: 311 PGDVFLDPMCGGGTIPVECSL 331
LDP CG GTI +E +L
Sbjct: 190 DDMALLDPFCGSGTIVIEATL 210
>gi|383812455|ref|ZP_09967893.1| THUMP domain / RNA methylase, PF01170 family multi-domain protein
[Prevotella sp. oral taxon 306 str. F0472]
gi|383355015|gb|EID32561.1| THUMP domain / RNA methylase, PF01170 family multi-domain protein
[Prevotella sp. oral taxon 306 str. F0472]
Length = 495
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
+ + + DI +N+ + + A + L + SLHRR + ++ L +A M+ +
Sbjct: 132 ISVSNPDIRLNIHVAEDNATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMILMTGWQG 191
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GT+P+E +L
Sbjct: 192 ETDFIDPMCGSGTLPIEAAL 211
>gi|424814536|ref|ZP_18239714.1| putative DNA modification methylase [Candidatus Nanosalina sp.
J07AB43]
gi|339758152|gb|EGQ43409.1| putative DNA modification methylase [Candidatus Nanosalina sp.
J07AB43]
Length = 316
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 28/114 (24%)
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCG------DINEKL 347
+L P +A +V L+ PG+ LDP CG G I +E L CG DI+E++
Sbjct: 165 SLDPKLARTLVNLSGIRPGEHILDPFCGTGGILIEAGL--------CGVGIAGTDIDEEM 216
Query: 348 VLKTQANVLHNSGNLNRELKV-----SPLVCNVRQLCFKPACVDGIVTDLPFGK 396
V + N L G +N +++ +P V N R+ D IVTDLP+G+
Sbjct: 217 VEGCRKN-LEEYGIINHDIRQESAEKAPEVFN-REF-------DAIVTDLPYGR 261
>gi|440230340|ref|YP_007344133.1| putative N6-adenine-specific DNA methylase [Serratia marcescens
FGI94]
gi|440052045|gb|AGB81948.1| putative N6-adenine-specific DNA methylase [Serratia marcescens
FGI94]
Length = 718
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLD 317
DI IN+ ++ + A V L ++ LH+R + LK T+A +V+ + PG LD
Sbjct: 148 DIRINVFLQRDMASVALDLSGEGLHQRGYRDLTGQAPLKETLAAAIVQRSGWQPGTPMLD 207
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+ +E ++
Sbjct: 208 PMCGSGTLLIEAAM 221
>gi|448417262|ref|ZP_21579280.1| RNA methylase [Halosarcina pallida JCM 14848]
gi|445678485|gb|ELZ30978.1| RNA methylase [Halosarcina pallida JCM 14848]
Length = 329
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 98/241 (40%), Gaps = 22/241 (9%)
Query: 238 ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-----FNI 292
ERA GG L D F VDLDD D + + +G ++ V F
Sbjct: 103 ERALGGVLVDRGF-EVDLDDPDNVLCALFSADSCLLGWRAAESVRDFGTRVPTDRPFFQP 161
Query: 293 TTLKPTIAYNMVRLAS--PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLK 350
++ P A V LA+ +P +DPMCG G + VE L+ V D K+
Sbjct: 162 GSMNPLDARAYVNLAAGPALPDATVVDPMCGTGGLLVEAGLA--GARVVGSDAQWKMARG 219
Query: 351 TQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRL 410
TQ N+ + + E + + L + C D +V D P+G++ SK L L
Sbjct: 220 TQTNLDAYLPDADWEA----VRGDATSLPLRDDCADAVVFDAPYGRQ--SKIARHELSDL 273
Query: 411 FLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSG-MKSFVFILNR 469
+ + R I + LL +DR A +A W+ + + + G + V +L+R
Sbjct: 274 VGGALSEAAR--IAPSALLVADRSWEETA---ENAGWRVDARFERRVHGSLDRHVHVLSR 328
Query: 470 T 470
Sbjct: 329 A 329
>gi|332796925|ref|YP_004458425.1| RNA methylase [Acidianus hospitalis W1]
gi|332694660|gb|AEE94127.1| putative RNA methylase [Acidianus hospitalis W1]
Length = 310
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 15/134 (11%)
Query: 303 MVRLASPIPGDVFLDPMCGGGTIPVECS-LSYPHTFFVCGDINEKLVLKTQANVLHNSGN 361
+V LA+P LDP G G+I +E S L Y + GDI+ K++ KT+ N+ H
Sbjct: 154 LVNLANP--EKTILDPFAGVGSILIEASWLGYN---CIGGDIDSKMIEKTKYNLKH---- 204
Query: 362 LNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNF-LLYRLFLIEIGKIVR 420
N E ++ + ++ L K VD IVTD P+G+ V ++ F LY ++++
Sbjct: 205 FNYECQI--IQEDISNLPIKENSVDAIVTDPPYGRSVNARDVKFDELYESLFFNSAEVLK 262
Query: 421 PQIGRAILLTSDRK 434
G ++ +D K
Sbjct: 263 K--GGKLVFATDSK 274
>gi|390439236|ref|ZP_10227646.1| putative enzyme [Microcystis sp. T1-4]
gi|389837363|emb|CCI31770.1| putative enzyme [Microcystis sp. T1-4]
Length = 375
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 252 LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPI 310
VD ++ D+ IN I N + L + SLHRR + LK ++A +V L++
Sbjct: 130 FVDTENPDLQINAHIEKNRCVLSLDSSGHSLHRRGYHRAMGVAPLKESLAAALVELSAWQ 189
Query: 311 PGDVFLDPMCGGGTIPVECSL 331
LDP CG GTI +E +L
Sbjct: 190 DDMALLDPFCGSGTIVIEATL 210
>gi|422303187|ref|ZP_16390541.1| putative enzyme [Microcystis aeruginosa PCC 9806]
gi|389791875|emb|CCI12344.1| putative enzyme [Microcystis aeruginosa PCC 9806]
Length = 375
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 252 LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPI 310
VD ++ D+ IN I N + L + SLHRR + LK ++A +V L++
Sbjct: 130 FVDTENPDLQINAHIEKNRCVLSLDSSGHSLHRRGYHRAMGVAPLKESLAAALVELSAWQ 189
Query: 311 PGDVFLDPMCGGGTIPVECSL 331
LDP CG GTI +E +L
Sbjct: 190 DDMALLDPFCGSGTIVIEATL 210
>gi|425444724|ref|ZP_18824768.1| putative enzyme [Microcystis aeruginosa PCC 9443]
gi|425454850|ref|ZP_18834576.1| putative enzyme [Microcystis aeruginosa PCC 9807]
gi|389735479|emb|CCI01027.1| putative enzyme [Microcystis aeruginosa PCC 9443]
gi|389804360|emb|CCI16688.1| putative enzyme [Microcystis aeruginosa PCC 9807]
Length = 375
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 252 LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPI 310
VD ++ D+ IN I N + L + SLHRR + LK ++A +V L++
Sbjct: 130 FVDTENPDLQINAHIEKNRCVLSLDSSGHSLHRRGYHRAMGVAPLKESLAAALVELSAWQ 189
Query: 311 PGDVFLDPMCGGGTIPVECSL 331
LDP CG GTI +E +L
Sbjct: 190 DDMALLDPFCGSGTIVIEATL 210
>gi|88807234|ref|ZP_01122746.1| putative RNA methylase family UPF0020 [Synechococcus sp. WH 7805]
gi|88788448|gb|EAR19603.1| putative RNA methylase family UPF0020 [Synechococcus sp. WH 7805]
Length = 390
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+DL++ D+ ++L + EA + L + SLHRR LK +A ++RL+
Sbjct: 146 IDLEEPDLSLHLHLHRGEATLSLDGSGGSLHRRGYRAAMGAAPLKENLAAGLIRLSGWDG 205
Query: 312 GDVFLDPMCGGGTIPVECS 330
+DP+CG GT+ +E +
Sbjct: 206 TGPLVDPLCGSGTLLIEAA 224
>gi|87307727|ref|ZP_01089870.1| hypothetical protein DSM3645_22611 [Blastopirellula marina DSM
3645]
gi|87289341|gb|EAQ81232.1| hypothetical protein DSM3645_22611 [Blastopirellula marina DSM
3645]
Length = 799
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 260 IDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDP 318
+ + + + +EA + + T +SLH+R LK T+A M+ L+ PG +DP
Sbjct: 139 VTVEVAMLEDEAILTIDTTGSSLHKRGYRTLVGTAPLKETLAAAMIDLSYWKPGRPLIDP 198
Query: 319 MCGGGTIPVECSL 331
CG GTIP+E +L
Sbjct: 199 FCGSGTIPIEAAL 211
>gi|333911358|ref|YP_004485091.1| THUMP domain-containing protein [Methanotorris igneus Kol 5]
gi|333751947|gb|AEF97026.1| THUMP domain-containing protein [Methanotorris igneus Kol 5]
Length = 344
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGL 275
F V CNR GKH TS E ER G ++ ++ VDL +YD IN++I + AY+ +
Sbjct: 103 FVVRCNRRGKHKYTSEEVERFIGKEVLKSFDLKVDLKNYDFKINIEILQDTAYISI 158
>gi|118594634|ref|ZP_01551981.1| Putative RNA methylase:THUMP [Methylophilales bacterium HTCC2181]
gi|118440412|gb|EAV47039.1| Putative RNA methylase:THUMP [Methylophilales bacterium HTCC2181]
Length = 378
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNI-TTLKPTIAYNMVRLASPIP 311
V++ D DI I+L + N + + + LH+R ++ +K +A +++L+ P
Sbjct: 131 VEVRDPDIRIHLFLEKNNFSLYIDTSGAPLHQRGFRTASVEAPIKENLAAGIIKLSGWNP 190
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G+ FLDPMCG GT +E ++
Sbjct: 191 GEPFLDPMCGSGTFLIEAAM 210
>gi|417864237|ref|ZP_12509284.1| hypothetical protein C22711_1170 [Escherichia coli O104:H4 str.
C227-11]
gi|341917526|gb|EGT67142.1| hypothetical protein C22711_1170 [Escherichia coli O104:H4 str.
C227-11]
Length = 238
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|387616200|ref|YP_006119222.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O83:H1 str.
NRG 857C]
gi|312945461|gb|ADR26288.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli O83:H1 str.
NRG 857C]
Length = 702
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKEIASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|170078288|ref|YP_001734926.1| N6-adenine-specific DNA methylase [Synechococcus sp. PCC 7002]
gi|169885957|gb|ACA99670.1| Predicted N6-adenine-specific DNA methylase [Synechococcus sp. PCC
7002]
Length = 374
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
V+++D D+ IN IR N + L + SLHRR LK A ++ LA P
Sbjct: 130 VNVEDPDVLINAHIRDNRCTISLDSSGHSLHRRGYRPAMGKAPLKENFAAGLLDLAEWTP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
+DP+CG GT +E +L
Sbjct: 190 DLPLVDPLCGSGTFVIEAAL 209
>gi|148544154|ref|YP_001271524.1| RNA methylase [Lactobacillus reuteri DSM 20016]
gi|184153527|ref|YP_001841868.1| hypothetical protein LAR_0872 [Lactobacillus reuteri JCM 1112]
gi|227364583|ref|ZP_03848644.1| site-specific DNA-methyltransferase [Lactobacillus reuteri MM2-3]
gi|325682302|ref|ZP_08161819.1| site-specific DNA-methyltransferase [Lactobacillus reuteri MM4-1A]
gi|148531188|gb|ABQ83187.1| putative RNA methylase [Lactobacillus reuteri DSM 20016]
gi|183224871|dbj|BAG25388.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
gi|227070420|gb|EEI08782.1| site-specific DNA-methyltransferase [Lactobacillus reuteri MM2-3]
gi|324978141|gb|EGC15091.1| site-specific DNA-methyltransferase [Lactobacillus reuteri MM4-1A]
Length = 398
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 51/182 (28%)
Query: 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN 354
LK +A +V LA P + F+DP+CG GTIP+E +L Y H + IN + + N
Sbjct: 174 LKENMAAALVMLAHWFPDNPFVDPVCGSGTIPIEAAL-YGHN--IAPGINRSFISEQWVN 230
Query: 355 VLHNS------------GNLNREL-------------------KVSPLVCNV--RQLCFK 381
++ + N + EL + + L ++ +QL K
Sbjct: 231 LVPDGLSDEVRDEADSLANYDIELDIHGYDIDQNMIDISQENSRAAGLTHDITFKQLAVK 290
Query: 382 ---PACVDG-IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLI 437
+ V+G IV + P+G+R+ K + LYR ++G++ RP LT+ K+++
Sbjct: 291 DWQTSEVNGVIVANPPYGERLSDKKSVHELYR----QMGELYRP-------LTTWSKYIL 339
Query: 438 QA 439
A
Sbjct: 340 TA 341
>gi|307352835|ref|YP_003893886.1| putative RNA methylase [Methanoplanus petrolearius DSM 11571]
gi|307156068|gb|ADN35448.1| putative RNA methylase [Methanoplanus petrolearius DSM 11571]
Length = 317
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 14/142 (9%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F+ + P +A +V L+ GD+ LDP CG G I +E L V G ++ +L
Sbjct: 155 FHPGVMMPIMARTLVNLSFAGEGDLLLDPFCGTGGILLEGQLLGCR---VIGSDMDRFML 211
Query: 350 KTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNF-LLY 408
+ L ++ L + PL VD + TDLP+G+ V ++ + LY
Sbjct: 212 EGCRENLPSAEVLCADATCLPL---------PDGSVDAVATDLPYGQSVCIRAESMNKLY 262
Query: 409 RLFLIEIGKIVRPQIGRAILLT 430
L EI ++++P GRA+++T
Sbjct: 263 NDSLAEIRRVLKPG-GRAVVVT 283
>gi|91210043|ref|YP_540029.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli UTI89]
gi|117623159|ref|YP_852072.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli APEC O1]
gi|218557846|ref|YP_002390759.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli S88]
gi|237707069|ref|ZP_04537550.1| YcbY [Escherichia sp. 3_2_53FAA]
gi|386598719|ref|YP_006100225.1| RNA methylase family protein [Escherichia coli IHE3034]
gi|386605148|ref|YP_006111448.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli UM146]
gi|417083443|ref|ZP_11951538.1| methyltransferase [Escherichia coli cloneA_i1]
gi|419945084|ref|ZP_14461540.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli HM605]
gi|422358627|ref|ZP_16439278.1| THUMP domain protein [Escherichia coli MS 110-3]
gi|422748007|ref|ZP_16801920.1| THUMP domain-containing protein [Escherichia coli H252]
gi|422753564|ref|ZP_16807391.1| THUMP domain-containing protein [Escherichia coli H263]
gi|422839422|ref|ZP_16887394.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
H397]
gi|432357275|ref|ZP_19600519.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE4]
gi|432361700|ref|ZP_19604884.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE5]
gi|432572922|ref|ZP_19809412.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE55]
gi|432587209|ref|ZP_19823576.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE58]
gi|432596823|ref|ZP_19833104.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE62]
gi|432753696|ref|ZP_19988262.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE22]
gi|432777836|ref|ZP_20012086.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE59]
gi|432786625|ref|ZP_20020789.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE65]
gi|432820201|ref|ZP_20053914.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE118]
gi|432826432|ref|ZP_20060087.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE123]
gi|433004409|ref|ZP_20192847.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE227]
gi|433011664|ref|ZP_20200068.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE229]
gi|433153036|ref|ZP_20338001.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE176]
gi|433162779|ref|ZP_20347538.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE179]
gi|433167790|ref|ZP_20352455.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE180]
gi|122424335|sp|Q1RDR6.1|RLMKL_ECOUT RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|229560151|sp|A1A9L8.1|RLMKL_ECOK1 RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|91071617|gb|ABE06498.1| hypothetical protein YcbY [Escherichia coli UTI89]
gi|115512283|gb|ABJ00358.1| YcbY [Escherichia coli APEC O1]
gi|218364615|emb|CAR02301.1| putative conserved AdoMet-dependent methyltransferase with RNA
interaction domain [Escherichia coli S88]
gi|226898279|gb|EEH84538.1| YcbY [Escherichia sp. 3_2_53FAA]
gi|294489485|gb|ADE88241.1| putative RNA methylase family UPF0020 [Escherichia coli IHE3034]
gi|307627632|gb|ADN71936.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli UM146]
gi|315287572|gb|EFU46978.1| THUMP domain protein [Escherichia coli MS 110-3]
gi|323953350|gb|EGB49216.1| THUMP domain-containing protein [Escherichia coli H252]
gi|323958247|gb|EGB53956.1| THUMP domain-containing protein [Escherichia coli H263]
gi|355352859|gb|EHG02033.1| methyltransferase [Escherichia coli cloneA_i1]
gi|371609954|gb|EHN98487.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
H397]
gi|388416740|gb|EIL76619.1| 23S rRNA m(2)G2445 methyltransferase [Escherichia coli HM605]
gi|430879141|gb|ELC02498.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE4]
gi|430889590|gb|ELC12251.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE5]
gi|431110130|gb|ELE14057.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE55]
gi|431122919|gb|ELE25671.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE58]
gi|431132608|gb|ELE34607.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE62]
gi|431304932|gb|ELF93456.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE22]
gi|431330025|gb|ELG17310.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE59]
gi|431340671|gb|ELG27692.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE65]
gi|431370457|gb|ELG56258.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE118]
gi|431374216|gb|ELG59811.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE123]
gi|431517730|gb|ELH95252.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE227]
gi|431518279|gb|ELH95799.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE229]
gi|431677709|gb|ELJ43783.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE176]
gi|431691449|gb|ELJ56909.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE179]
gi|431692761|gb|ELJ58185.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE180]
Length = 702
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGMAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|432405753|ref|ZP_19648473.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE28]
gi|430931907|gb|ELC52341.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE28]
Length = 702
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETANIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVIRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|227544608|ref|ZP_03974657.1| site-specific DNA-methyltransferase [Lactobacillus reuteri CF48-3A]
gi|338204545|ref|YP_004650690.1| site-specific DNA-methyltransferase [Lactobacillus reuteri SD2112]
gi|227185415|gb|EEI65486.1| site-specific DNA-methyltransferase [Lactobacillus reuteri CF48-3A]
gi|336449785|gb|AEI58400.1| site-specific DNA-methyltransferase [Lactobacillus reuteri SD2112]
Length = 384
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 51/182 (28%)
Query: 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN 354
LK +A +V LA P + F+DP+CG GTIP+E +L Y H + IN + + N
Sbjct: 174 LKENMAAALVMLAYWFPDNPFVDPVCGSGTIPIEAAL-YGHN--IAPGINRSFISEQWVN 230
Query: 355 VLHNS------------GNLNREL-------------------KVSPLVCNV--RQLCFK 381
++ + N + EL + + L ++ +QL K
Sbjct: 231 LVPDGLSDEVRDEADSLANYDIELDIHGYDIDQNMIDIAQENSRAAGLTHDITFKQLAVK 290
Query: 382 ---PACVDG-IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLI 437
+ V+G IV + P+G+R+ K + LYR ++G++ RP LT+ K+++
Sbjct: 291 DWQTSEVNGVIVANPPYGERLSDKESVHELYR----QMGELYRP-------LTTWSKYIL 339
Query: 438 QA 439
A
Sbjct: 340 TA 341
>gi|432396821|ref|ZP_19639606.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE25]
gi|432722448|ref|ZP_19957371.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE17]
gi|432727036|ref|ZP_19961917.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE18]
gi|432740722|ref|ZP_19975443.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE23]
gi|432990035|ref|ZP_20178701.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE217]
gi|433110260|ref|ZP_20296132.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE150]
gi|430917141|gb|ELC38189.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE25]
gi|431267525|gb|ELF59042.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE17]
gi|431274824|gb|ELF65869.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE18]
gi|431285313|gb|ELF76149.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE23]
gi|431496910|gb|ELH76488.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE217]
gi|431630230|gb|ELI98568.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE150]
Length = 702
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETANIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVIRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|149372771|ref|ZP_01891792.1| putative N6-adenine-specific DNA methylase [unidentified
eubacterium SCB49]
gi|149354468|gb|EDM43033.1| putative N6-adenine-specific DNA methylase [unidentified
eubacterium SCB49]
Length = 387
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VDLD + IN+ I N V L + SLH+R E I + +A M+ L+
Sbjct: 133 VDLDHPTLRINIHIDRNICTVSLDSSGQSLHKRGYKTEATIAPINEVLAAGMIMLSGWSG 192
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GTI E ++
Sbjct: 193 QCDFMDPMCGSGTIVAEAAM 212
>gi|432552941|ref|ZP_19789670.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE47]
gi|431085658|gb|ELD91762.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE47]
Length = 702
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGMAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|386828293|ref|ZP_10115400.1| putative N6-adenine-specific DNA methylase [Beggiatoa alba B18LD]
gi|386429177|gb|EIJ43005.1| putative N6-adenine-specific DNA methylase [Beggiatoa alba B18LD]
Length = 744
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLAS--- 308
V LD D+ IN + + A + L ++ SLHRR E +T LK +A ++ +
Sbjct: 133 VALDQPDLRINAYLHQDTATISLDLSGDSLHRRGYRETGVTAPLKENLAAALLARSKWQD 192
Query: 309 -PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLV 348
G + LDPMCG GT+ +E + ++ GDI L+
Sbjct: 193 IAQAGGMLLDPMCGSGTLLIEGA-------WIAGDIAPALL 226
>gi|146297308|ref|YP_001181079.1| putative RNA methylase [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|145410884|gb|ABP67888.1| putative RNA methylase [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 370
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 86/205 (41%), Gaps = 40/205 (19%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPG-DVFLDPM 319
I + + + AYV T SLH+R + ++ LK IA +V L+ P +V DP
Sbjct: 137 IEIALLNDTAYVLFDTTGESLHKRGYRKLQSLAPLKENIAATLVILSRWRPQQEVLWDPF 196
Query: 320 CGGGTIPVECSL-------SYPHTF------FVCGDINEKLVLKTQANVLHNSGNLNREL 366
CG GTIP+E ++ TF FV D+ K L+ + +NS
Sbjct: 197 CGSGTIPIEAAMIAKNIAPGLNRTFLAEQNGFVSQDLWNKARLEVIGKIDYNSKFNILAS 256
Query: 367 KVSPLVCNVRQLCFKPACV---------DG-----------IVTDLPFGKRVGSKSNNFL 406
+ + + + K A V DG I+T+ P+G+R+ + S+ F
Sbjct: 257 DIDEKMIYIAKTNAKAAGVEKDIRFFKADGRKIKKSSDKGIIITNPPYGERIDN-SDIFN 315
Query: 407 LYRLFLIEIGKIVRPQIGRAILLTS 431
LYR F GK +R G + S
Sbjct: 316 LYRDF----GKCLRDFSGWRFFILS 336
>gi|448315725|ref|ZP_21505365.1| RNA methylase [Natronococcus jeotgali DSM 18795]
gi|445610860|gb|ELY64627.1| RNA methylase [Natronococcus jeotgali DSM 18795]
Length = 359
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 16/118 (13%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F ++ P +A + +A PG LDPMCG G + VE L V D K+V
Sbjct: 183 FQPGSMDPLLARAVANVAGARPGATILDPMCGTGGVLVEAGLVGADV--VGTDAQAKMVD 240
Query: 350 KTQANVLHNSGNLNRELKVSPLVC----------NVRQLCFKPACVDGIVTDLPFGKR 397
+ N+ H L R+ + SP + +L F VDG+V D P+G++
Sbjct: 241 GARTNLEH---FLERD-EPSPTGVSRGSWHVGRGDATRLPFADGAVDGVVFDAPYGRQ 294
>gi|54308958|ref|YP_129978.1| 23S rRNA m(2)G2445 methyltransferase [Photobacterium profundum SS9]
gi|81828763|sp|Q6LRA0.1|RLMKL_PHOPR RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|46913388|emb|CAG20176.1| hypothetical N6-adenine-specific DNA methylase [Photobacterium
profundum SS9]
Length = 712
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+D + D+ I++++ + +GL + + LH+R E L+ T A +V + P
Sbjct: 130 IDREQPDLRIHMRLSGEKGVLGLDMAGSGLHQRGYRTEAGRAPLRETHAAALVLKSGWTP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GQPLLDPMCGSGTLLIEAAM 209
>gi|359415971|ref|ZP_09208351.1| putative RNA methyltransferase [Candidatus Haloredivivus sp. G17]
gi|358033689|gb|EHK02214.1| putative RNA methyltransferase [Candidatus Haloredivivus sp. G17]
Length = 344
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 13/147 (8%)
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353
+LKP+IA +V +A PG +D G GTI E L + GDI+ V ++
Sbjct: 178 SLKPSIAAGLVEMADVKPGQKIVDNFAGAGTILCEAQLQGLEVY--GGDIDRDAVKCSRE 235
Query: 354 NVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLI 413
N+ + S + ++K + R C D V+++P+GK+V N LY
Sbjct: 236 NLSNISEEASNQIK----RLDGRDSPHPDNCFDAAVSNIPWGKQVD--LNEVELYSQTFE 289
Query: 414 EIGKIVRPQIGRAILLTSD----RKHL 436
E +I++ G I+L + RKH+
Sbjct: 290 EYSRILKAS-GTLIILCDNPELARKHI 315
>gi|282859683|ref|ZP_06268785.1| THUMP domain protein [Prevotella bivia JCVIHMP010]
gi|424899143|ref|ZP_18322689.1| putative N6-adenine-specific DNA methylase [Prevotella bivia DSM
20514]
gi|282587601|gb|EFB92804.1| THUMP domain protein [Prevotella bivia JCVIHMP010]
gi|388593357|gb|EIM33595.1| putative N6-adenine-specific DNA methylase [Prevotella bivia DSM
20514]
Length = 504
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ + +A + L + SLHRR + ++ L +A M+ + F+D
Sbjct: 139 DIRLNIHVAEFDATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMILMTGWKGETDFID 198
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+P+E +L
Sbjct: 199 PMCGSGTLPIEAAL 212
>gi|255523514|ref|ZP_05390482.1| putative RNA methylase [Clostridium carboxidivorans P7]
gi|296186527|ref|ZP_06854930.1| hypothetical protein CLCAR_1981 [Clostridium carboxidivorans P7]
gi|255512771|gb|EET89043.1| putative RNA methylase [Clostridium carboxidivorans P7]
gi|296048974|gb|EFG88405.1| hypothetical protein CLCAR_1981 [Clostridium carboxidivorans P7]
Length = 539
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 9/157 (5%)
Query: 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370
P +DP CG GT+ +E + DI + + N N+N +LK
Sbjct: 389 PNAKVIDPFCGAGTMLIERAKLKDFKSLTGIDIFNTGIAYAEVNSYL--ANVNIQLKCED 446
Query: 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430
++ + F D +++++PF + G S N LY F+ I IVRP G I L
Sbjct: 447 ILEFYSRDRF-----DEMISNMPFESKSGVSSFNTRLYSEFVNRIPSIVRP--GGMIFLY 499
Query: 431 SDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFIL 467
+ K+L++ I + K IKI G+ VF++
Sbjct: 500 TVEKNLLKESLIDNKYLKIIDTIKIESGGLIPHVFVI 536
>gi|313123671|ref|YP_004033930.1| site-specific DNA-methyltransferase [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|312280234|gb|ADQ60953.1| Site-specific DNA-methyltransferase [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 374
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 39/197 (19%)
Query: 258 YDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFL 316
Y +D++ I + + L T SL +R +E LK A ++++L + F+
Sbjct: 138 YQLDVH--IYKDTVRLSLDTTGESLFKRGYRIEHGGAPLKENFAASLIKLTTYDGTHPFI 195
Query: 317 DPMCGGGTIPVECSL----SYPHTF---------FVCGDINEKLVLKTQANVLHNSGNLN 363
DPMCG GT+P+E +L P T+ + ++E+L+ + ++ V +
Sbjct: 196 DPMCGSGTLPIEAALIARNIAPGTWRKFAFDDFDWFDPRLHEELLKEAKSQVKPAEAPIW 255
Query: 364 RE------LKVSPLVCN----VRQLCFKPACVDGIVTDL---------PFGKRVGSKSNN 404
L+V+ L + ++ + FK V TDL P+GKR+ K
Sbjct: 256 ASDIDQSILEVAKLNAHNAGVLQDIRFKQVAVKDFTTDLENGVIVSNPPYGKRLKDKQGA 315
Query: 405 FLLYRLFLIEIGKIVRP 421
LYR ++G+++RP
Sbjct: 316 EELYR----QMGEVLRP 328
>gi|345867279|ref|ZP_08819294.1| RNA methylase UPF0020 family protein [Bizionia argentinensis JUB59]
gi|344048322|gb|EGV43931.1| RNA methylase UPF0020 family protein [Bizionia argentinensis JUB59]
Length = 385
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+DL D+ +N+ I N+ + L + SLH+R NI + +A +V L+
Sbjct: 133 IDLRFPDLKVNVHIDRNQCTISLDSSGESLHKRGYKTATNIAPINEVLAAGLVMLSGWDG 192
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GTI E ++
Sbjct: 193 QSDFMDPMCGSGTILAEAAM 212
>gi|384164782|ref|YP_005546161.1| methylase with RNA interaction domain [Bacillus amyloliquefaciens
LL3]
gi|328912337|gb|AEB63933.1| putative methylase with RNA interaction domain [Bacillus
amyloliquefaciens LL3]
Length = 395
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 224 CNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSL 282
C R+ K + E+ + GK N+ W+ + +Y ++I+L ++A + L + T L
Sbjct: 122 CQRIVKKAIA--ENLKLQSGKQNE---WIEETGPEYKVEISL--LKDKAVITLDSSGTGL 174
Query: 283 HRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
H+R V+ +K T+A +V L + P F+DP CG GTI +E +L
Sbjct: 175 HKRGYRVDQGGAPIKETLAAALVLLTNWTPDRPFVDPFCGSGTIAIEAAL 224
>gi|311068729|ref|YP_003973652.1| methylase with RNA interaction domain [Bacillus atrophaeus 1942]
gi|419820631|ref|ZP_14344240.1| putative methylase with RNA interaction domain [Bacillus atrophaeus
C89]
gi|310869246|gb|ADP32721.1| putative methylase with RNA interaction domain [Bacillus atrophaeus
1942]
gi|388475105|gb|EIM11819.1| putative methylase with RNA interaction domain [Bacillus atrophaeus
C89]
Length = 385
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 224 CNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSL 282
C R+ K + +E + GK ND W+ + +Y ++I+L ++A + L + L
Sbjct: 109 CQRIVKKAI--VEKLKLQSGKQND---WIEETGAEYKVEISL--LKDKAVITLDSSGIGL 161
Query: 283 HRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
H+R ++ +K T+A ++ L + P F DP CG GTIP+E ++
Sbjct: 162 HKRGYRIDQGGAPIKETLAAALILLTNWTPDRPFADPFCGSGTIPIEAAM 211
>gi|296135053|ref|YP_003642295.1| rRNA (guanine-N(2)-)-methyltransferase [Thiomonas intermedia K12]
gi|295795175|gb|ADG29965.1| rRNA (guanine-N(2)-)-methyltransferase [Thiomonas intermedia K12]
Length = 416
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 239 RAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKP 297
RA G+ D VD D+ I+L +R +A + L + L +R E LK
Sbjct: 149 RALTGERPD-----VDTAHPDVRIHLHLREADALLYLDTSGEPLFKRGWRSEHGAAPLKE 203
Query: 298 TIAYNMVRLASPIPGDVFLDPMCGGGTIPVE 328
+A +++L+ PGDV DP+CG GT+ +E
Sbjct: 204 HLAAGLLKLSGWTPGDVLFDPLCGSGTLVIE 234
>gi|149191332|ref|ZP_01869585.1| predicted methyltransferase [Vibrio shilonii AK1]
gi|148834811|gb|EDL51795.1| predicted methyltransferase [Vibrio shilonii AK1]
Length = 710
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 105/249 (42%), Gaps = 54/249 (21%)
Query: 256 DDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDV 314
D D+ +++++ ++A +GL + + LH+R E L+ T+A +V + G
Sbjct: 136 DRADVRVHVRLHRDKALIGLDMVGSGLHQRGYRTEAGRAPLRETLAAAIVARSGWKEGQN 195
Query: 315 FLDPMCGGGTIPVECSLSYPHT----------FFVCGDINEKLV--LKTQANV------- 355
LDPMCG GT+ +E ++ + F D ++ +K++ANV
Sbjct: 196 MLDPMCGSGTLLIEAAMLAANMAPGVKRQTWCFEALEDFEPEVWAEVKSEANVQARRGVK 255
Query: 356 --------LHNSGNLNRELKVSPLVCNVRQL----------CFKPACV-DGIVT-DLPFG 395
N + R K + V +L KPA +G+V + P+G
Sbjct: 256 KTDSRFWGFDNDPKVLRTAKENAKRAGVEELINFELGDAGQVTKPAEFGEGVVVCNPPYG 315
Query: 396 KRVGSKSNNFLLYRLFLIEIGKIVRPQIG---RAILLTSDRKHLIQALHITSALWKCRKQ 452
+R+G++ LY E G ++ Q G +I +SD L+ L + + KQ
Sbjct: 316 ERLGTEPGLIALY----TEFGNQLKTQFGGCQASIFSSSD--DLLSCLRM-----RAEKQ 364
Query: 453 IKINMSGMK 461
K+N ++
Sbjct: 365 FKLNNGALQ 373
>gi|384158779|ref|YP_005540852.1| methylase with RNA interaction domain [Bacillus amyloliquefaciens
TA208]
gi|384167842|ref|YP_005549220.1| methylase with RNA interaction domain [Bacillus amyloliquefaciens
XH7]
gi|328552867|gb|AEB23359.1| methylase with RNA interaction domain [Bacillus amyloliquefaciens
TA208]
gi|341827121|gb|AEK88372.1| putative methylase with RNA interaction domain [Bacillus
amyloliquefaciens XH7]
Length = 395
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 224 CNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSL 282
C R+ K + E + GK N+ W+ + +Y ++I+L ++A + L + T L
Sbjct: 122 CQRIVKKAIA--EKLKLQSGKQNE---WIEETGPEYKVEISL--LKDKAVITLDSSGTGL 174
Query: 283 HRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
H+R V+ +K T+A +V L + P F+DP CG GTI +E +L
Sbjct: 175 HKRGYRVDQGGAPIKETLAAALVLLTNWTPDRPFVDPFCGSGTIAIEAAL 224
>gi|308174008|ref|YP_003920713.1| methylase with RNA interaction domain [Bacillus amyloliquefaciens
DSM 7]
gi|307606872|emb|CBI43243.1| putative methylase with RNA interaction domain [Bacillus
amyloliquefaciens DSM 7]
Length = 382
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 9/158 (5%)
Query: 176 QVNNVQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSM 235
QV Q + D ++ K ID + + +++L C R+ K +
Sbjct: 61 QVAEFQAKTFDELFEKTKAIDWRAYIPENAKFPVIGKSVKSVLASVPDCQRIVKKAIA-- 118
Query: 236 ESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNIT 293
E + GK N+ W+ + +Y ++I+L ++A + L + T LH+R V+
Sbjct: 119 EKLKLQSGKQNE---WIEETGPEYKVEISL--LKDKAVITLDSSGTGLHKRGYRVDQGGA 173
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
+K T+A +V L + P F+DP CG GTI +E +L
Sbjct: 174 PIKETLAAALVLLTNWTPDRPFVDPFCGSGTIAIEAAL 211
>gi|294635636|ref|ZP_06714112.1| putative methylase [Edwardsiella tarda ATCC 23685]
gi|451964423|ref|ZP_21917688.1| 23S rRNA methyltransferase RlmL [Edwardsiella tarda NBRC 105688]
gi|291091019|gb|EFE23580.1| putative methylase [Edwardsiella tarda ATCC 23685]
gi|451316796|dbj|GAC63050.1| 23S rRNA methyltransferase RlmL [Edwardsiella tarda NBRC 105688]
Length = 705
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 257 DYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVF 315
D DI IN+ ++ A V L ++ LH+R + LK T+A +V + PG
Sbjct: 134 DPDIRINVNLQRERAVVSLDLSGEGLHQRGYRDLTGQAPLKETLAAAVVLRSGWQPGTPL 193
Query: 316 LDPMCGGGTIPVECSL 331
+DPMCG GT+ +E ++
Sbjct: 194 VDPMCGSGTLLIEAAM 209
>gi|154686464|ref|YP_001421625.1| hypothetical protein RBAM_020320 [Bacillus amyloliquefaciens FZB42]
gi|154352315|gb|ABS74394.1| YpsC [Bacillus amyloliquefaciens FZB42]
Length = 382
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 9/158 (5%)
Query: 176 QVNNVQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSM 235
QV Q + D ++ K ID + + +++L C R+ K +
Sbjct: 61 QVAEFQAKTFDELFEKTKAIDWRAYIPENAKFPVIGKSVKSVLASVPDCQRIVKKAIA-- 118
Query: 236 ESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNIT 293
E + GK N+ W+ + +Y ++I+L ++A + L + T LH+R V+
Sbjct: 119 EKLKLQSGKQNE---WIEETGPEYKVEISL--LKDKAVLTLDSSGTGLHKRGYRVDQGGA 173
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
+K T+A +++L + P F+DP CG GTI +E +L
Sbjct: 174 PIKETLAAALIQLTNWTPDRPFVDPFCGSGTIAIEAAL 211
>gi|385265190|ref|ZP_10043277.1| hypothetical protein MY7_1955 [Bacillus sp. 5B6]
gi|385149686|gb|EIF13623.1| hypothetical protein MY7_1955 [Bacillus sp. 5B6]
Length = 400
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 224 CNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSL 282
C R+ K + E + GK N+ W+ + +Y ++I+L ++A + L + T L
Sbjct: 121 CQRIVKKAIA--EKLKLQSGKQNE---WIEETGPEYKVEISL--LKDKAVLTLDSSGTGL 173
Query: 283 HRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
H+R V+ +K T+A +++L + P F+DP CG GTI +E +L
Sbjct: 174 HKRGYRVDQGGAPIKETLAAALIQLTNWTPDRPFVDPFCGSGTIAIEAAL 223
>gi|295133696|ref|YP_003584372.1| RNA methylase [Zunongwangia profunda SM-A87]
gi|294981711|gb|ADF52176.1| putative RNA methylase family protein [Zunongwangia profunda
SM-A87]
Length = 385
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VDL + +N+ I V L + SLH+R NI + +A M+ L S
Sbjct: 133 VDLKFPSLRVNIHIEKTWCNVSLDTSGDSLHKRGYRTATNIAPINEILAAGMI-LKSGWQ 191
Query: 312 GDV-FLDPMCGGGTIPVECSL 331
G FLDPMCG GTIP+E ++
Sbjct: 192 GQCDFLDPMCGSGTIPIEAAM 212
>gi|394993599|ref|ZP_10386344.1| YpsC [Bacillus sp. 916]
gi|393805711|gb|EJD67085.1| YpsC [Bacillus sp. 916]
Length = 388
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 224 CNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSL 282
C R+ K + E + GK N+ W+ + +Y ++I+L ++A + L + T L
Sbjct: 109 CQRIVKKAIA--EKLKLQSGKQNE---WIEETGPEYKVEISL--LKDKAVLTLDSSGTGL 161
Query: 283 HRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
H+R V+ +K T+A +++L + P F+DP CG GTI +E +L
Sbjct: 162 HKRGYRVDQGGAPIKETLAAALIQLTNWTPDRPFVDPFCGSGTIAIEAAL 211
>gi|384265813|ref|YP_005421520.1| putative N6-adenine-specific DNA methylase [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387898821|ref|YP_006329117.1| hypothetical protein MUS_2462 [Bacillus amyloliquefaciens Y2]
gi|380499166|emb|CCG50204.1| putative N6-adenine-specific DNA methylase [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387172931|gb|AFJ62392.1| YpsC [Bacillus amyloliquefaciens Y2]
Length = 388
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 224 CNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSL 282
C R+ K + E + GK N+ W+ + +Y ++I+L ++A + L + T L
Sbjct: 109 CQRIVKKAIA--EKLKLQSGKQNE---WIEETGPEYKVEISL--LKDKAVLTLDSSGTGL 161
Query: 283 HRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
H+R V+ +K T+A +++L + P F+DP CG GTI +E +L
Sbjct: 162 HKRGYRVDQGGAPIKETLAAALIQLTNWTPDRPFVDPFCGSGTIAIEAAL 211
>gi|365969830|ref|YP_004951391.1| ribosomal RNA large subunit methyltransferase L [Enterobacter
cloacae EcWSU1]
gi|365748743|gb|AEW72970.1| Ribosomal RNA large subunit methyltransferase L [Enterobacter
cloacae EcWSU1]
Length = 702
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+ + + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRENPDLRINVWLNGDTASISLDLSGAGLHLRGYRDRTGMAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|429505603|ref|YP_007186787.1| hypothetical protein B938_10505 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|429487193|gb|AFZ91117.1| hypothetical protein B938_10505 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 388
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 224 CNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSL 282
C R+ K + E + GK N+ W+ + +Y ++I+L ++A + L + T L
Sbjct: 109 CQRIVKKAIA--EKLKLQSGKQNE---WIEETGPEYKVEISL--LKDKAVLTLDSSGTGL 161
Query: 283 HRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
H+R V+ +K T+A +++L + P F+DP CG GTI +E +L
Sbjct: 162 HKRGYRVDQGGAPIKETLAAALIQLTNWTPDRPFVDPFCGSGTIAIEAAL 211
>gi|390433385|ref|ZP_10221923.1| 23S rRNA m(2)G2445 methyltransferase [Pantoea agglomerans IG1]
Length = 704
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD + DI +N+ + + A + L ++ +SLH+R + LK T+A +V + P
Sbjct: 130 VDREQADIRVNVWLNDDRASIALDLSGSSLHQRGYRQQTGQAPLKETLAAAIVLRSGWEP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
+DPMCG GT+ +E +L
Sbjct: 190 TTPLIDPMCGSGTLLIEAAL 209
>gi|16331495|ref|NP_442223.1| hypothetical protein slr0064 [Synechocystis sp. PCC 6803]
gi|383323237|ref|YP_005384091.1| hypothetical protein SYNGTI_2329 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383326406|ref|YP_005387260.1| hypothetical protein SYNPCCP_2328 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383492290|ref|YP_005409967.1| hypothetical protein SYNPCCN_2328 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384437558|ref|YP_005652283.1| hypothetical protein SYNGTS_2330 [Synechocystis sp. PCC 6803]
gi|451815647|ref|YP_007452099.1| hypothetical protein MYO_123540 [Synechocystis sp. PCC 6803]
gi|2501583|sp|Q55156.1|Y064_SYNY3 RecName: Full=Putative RNA methyltransferase slr0064
gi|1001151|dbj|BAA10293.1| slr0064 [Synechocystis sp. PCC 6803]
gi|339274591|dbj|BAK51078.1| hypothetical protein SYNGTS_2330 [Synechocystis sp. PCC 6803]
gi|359272557|dbj|BAL30076.1| hypothetical protein SYNGTI_2329 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359275727|dbj|BAL33245.1| hypothetical protein SYNPCCN_2328 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359278897|dbj|BAL36414.1| hypothetical protein SYNPCCP_2328 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407961117|dbj|BAM54357.1| hypothetical protein BEST7613_5426 [Bacillus subtilis BEST7613]
gi|451781616|gb|AGF52585.1| hypothetical protein MYO_123540 [Synechocystis sp. PCC 6803]
Length = 384
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VDL+ DI IN I N + L T SLHRR LK T+A ++ +A P
Sbjct: 140 VDLEQPDIVINAHIHQNHCQLSLDSTGFSLHRRGYRPALGNAPLKETLASALLTMAGWTP 199
Query: 312 GDVFLDPMCGGGTIPVECSL 331
DP+CG GT +E L
Sbjct: 200 ELPLYDPLCGSGTFLLEAGL 219
>gi|452855977|ref|YP_007497660.1| Putative RNA methyltransferase YpsC [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|452080237|emb|CCP21999.1| Putative RNA methyltransferase YpsC [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 388
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 224 CNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSL 282
C R+ K + E + GK N+ W+ + +Y ++I+L ++A + L + T L
Sbjct: 109 CQRIVKKAIA--EKLKLQSGKQNE---WIEETGPEYKVEISL--LKDKAVLTLDSSGTGL 161
Query: 283 HRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
H+R V+ +K T+A +++L + P F+DP CG GTI +E +L
Sbjct: 162 HKRGYRVDQGGAPIKETLAAALIQLTNWTPDRPFVDPFCGSGTIAIEAAL 211
>gi|261339275|ref|ZP_05967133.1| hypothetical protein ENTCAN_05514 [Enterobacter cancerogenus ATCC
35316]
gi|288319135|gb|EFC58073.1| putative methylase [Enterobacter cancerogenus ATCC 35316]
Length = 702
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+ + + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRENPDLRINVWLNGDTASISLDLSGAGLHLRGYRDSTGMAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|345298623|ref|YP_004827981.1| ribosomal RNA large subunit methyltransferase L [Enterobacter
asburiae LF7a]
gi|345092560|gb|AEN64196.1| Ribosomal RNA large subunit methyltransferase L [Enterobacter
asburiae LF7a]
Length = 708
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+ + + A + L ++ LH R + + +K T+A +V + P
Sbjct: 136 VDRENPDLRINVWLNGDTASISLDLSGAGLHLRGYRDRTGMAPIKETLAAAIVMRSGWQP 195
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 196 GTPLLDPMCGSGTLLIEAAM 215
>gi|257062803|ref|YP_003142475.1| N6-adenine-specific DNA methylase [Slackia heliotrinireducens DSM
20476]
gi|256790456|gb|ACV21126.1| predicted N6-adenine-specific DNA methylase [Slackia
heliotrinireducens DSM 20476]
Length = 729
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 32/205 (15%)
Query: 139 LYPSIEQFNKYNDILR---HKK-SIRNEINIKKESSCETEPQVNNVQIEKGDLQNQELKE 194
L+ + F Y D LR H + + R ++ + + S+ + + V+ L + L
Sbjct: 37 LHGGVAFFGAYEDGLRACLHSRVATRVQLVLGRVSARNADALYDGVRA----LPWETLVA 92
Query: 195 IDINSMCSSQNQKTNFTNPEENLLKFR-VTCNRVGKHTVTSMESERAFGGKLNDTYFWLV 253
+ Q +N N + LK + C+R + +ER G D V
Sbjct: 93 PGATIAMRATGQNSNLRNTQFTALKVKDAVCDR--------LAAER---GARPD-----V 136
Query: 254 DLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT---LKPTIAYNMVRLAS-- 308
D D D +++ + ++A + L + LH+R E + T LK T+A M+ A
Sbjct: 137 DGSDPDFSVDILLHRDKATISLNLAGPVLHKRGYREPGVQTEAPLKETLAAGMLLAAGWD 196
Query: 309 --PIPGDVFLDPMCGGGTIPVECSL 331
G F DPMCG GT+ +E +L
Sbjct: 197 SMVADGMGFADPMCGSGTLAIEAAL 221
>gi|304397103|ref|ZP_07378982.1| putative RNA methylase [Pantoea sp. aB]
gi|304355252|gb|EFM19620.1| putative RNA methylase [Pantoea sp. aB]
Length = 704
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD + DI +N+ + + A + L ++ +SLH+R + LK T+A +V + P
Sbjct: 130 VDREQADIRVNVWLNDDRASIALDLSGSSLHQRGYRQQTGQAPLKETLAAAIVLRSGWEP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
+DPMCG GT+ +E +L
Sbjct: 190 TTPLIDPMCGSGTLLIEAAL 209
>gi|419957600|ref|ZP_14473666.1| 23S rRNA m(2)G2445 methyltransferase [Enterobacter cloacae subsp.
cloacae GS1]
gi|388607758|gb|EIM36962.1| 23S rRNA m(2)G2445 methyltransferase [Enterobacter cloacae subsp.
cloacae GS1]
Length = 702
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+ + + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRENPDLRINVWLNGDTASISLDLSGAGLHLRGYRDRTGMAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|401675398|ref|ZP_10807391.1| 23S rRNA methyltransferase [Enterobacter sp. SST3]
gi|400217376|gb|EJO48269.1| 23S rRNA methyltransferase [Enterobacter sp. SST3]
Length = 702
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+ + + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRENPDLRINVWLNGDTASISLDLSGAGLHLRGYRDRTGMAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|377830830|ref|ZP_09813821.1| hypothetical protein LBLM1_00830 [Lactobacillus mucosae LM1]
gi|377555278|gb|EHT16966.1| hypothetical protein LBLM1_00830 [Lactobacillus mucosae LM1]
Length = 377
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 25/183 (13%)
Query: 174 EPQVNNVQIE-KGDLQ-----NQELKEIDINSMCSSQNQKTNFTN--------PEENLLK 219
E QV N ++ +GDL+ N L+ D + + T+F + P E+LL
Sbjct: 28 ETQVENGRVRFEGDLRDIMVANLWLRTADRVKIIVGEFDATDFDSLFEQTKALPWEDLLP 87
Query: 220 FRVTCNRVGK------HTVTSMES--ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEA 271
GK H V S+++ ++A +L+ Y L + L++ N+
Sbjct: 88 IDAAFPVEGKSHRSQLHNVPSVQAIVKKAIVDRLSTVYHRRTRLSETGATYPLEVAINKD 147
Query: 272 YV--GLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVE 328
+V L T SL +R + LK +A +V LA P + F+DP+CG GTIP+E
Sbjct: 148 HVLLTLDTTGPSLFKRGYRKGKGGAPLKENMAAALVMLAHWFPDNPFVDPVCGSGTIPIE 207
Query: 329 CSL 331
+L
Sbjct: 208 AAL 210
>gi|206578159|ref|YP_002239411.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae 342]
gi|290510683|ref|ZP_06550053.1| ribosomal RNA large subunit methyltransferase L [Klebsiella sp.
1_1_55]
gi|238056567|sp|B5XY56.1|RLMKL_KLEP3 RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|206567217|gb|ACI08993.1| putative RNA methylase family UPF0020 [Klebsiella pneumoniae 342]
gi|289777399|gb|EFD85397.1| ribosomal RNA large subunit methyltransferase L [Klebsiella sp.
1_1_55]
Length = 701
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A++ L ++ LH R + + +K +A +V + +P
Sbjct: 130 VDRESPDLRINVWLNKETAHISLDLSGEGLHLRGYRDGTGMAPIKENLAAAIVMRSGWVP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|154150753|ref|YP_001404371.1| RNA methylase [Methanoregula boonei 6A8]
gi|153999305|gb|ABS55728.1| putative RNA methylase [Methanoregula boonei 6A8]
Length = 322
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 15/156 (9%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F+ + P +A +V L+ G + LDP CG G I +E + + + D + ++
Sbjct: 158 FHPGVMMPRMARTLVNLSLCGSGAILLDPFCGTGGILIEAEILSMNA--IGSDFDPMMIR 215
Query: 350 KTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFL--L 407
+ NV +S L L+ + L + VD +VTD P+G+ V K + + L
Sbjct: 216 GSAGNV--SSSTL--------LLADTTSLPVRDRSVDAVVTDFPYGQSVCIKKADTMERL 265
Query: 408 YRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHIT 443
Y L EI +I++P RA+++T I H+
Sbjct: 266 YYDALGEINRILKPG-ARAVVVTHRDISCIAVQHMA 300
>gi|334122587|ref|ZP_08496624.1| N6-adenine-specific DNA methytransferase [Enterobacter hormaechei
ATCC 49162]
gi|333391946|gb|EGK63054.1| N6-adenine-specific DNA methytransferase [Enterobacter hormaechei
ATCC 49162]
Length = 708
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+ + + A + L ++ LH R + + +K T+A +V + P
Sbjct: 136 VDRENPDLRINVWLNGDTASISLDLSGAGLHLRGYRDRTGMAPIKETLAAAIVMRSGWQP 195
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 196 GTPLLDPMCGSGTLLIEAAM 215
>gi|392978397|ref|YP_006476985.1| 23S rRNA m(2)G2445 methyltransferase [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392324330|gb|AFM59283.1| 23S rRNA m(2)G2445 methyltransferase [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 702
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+ + + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRENPDLRINVWLNGDTASISLDLSGAGLHLRGYRDRTGMAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|295096315|emb|CBK85405.1| 23S rRNA m(2)G-2445 methyltransferase [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 708
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+ + + A + L ++ LH R + + +K T+A +V + P
Sbjct: 136 VDRENPDLRINVWLNGDTASISLDLSGAGLHLRGYRDRTGMAPIKETLAAAIVMRSGWQP 195
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 196 GTPLLDPMCGSGTLLIEAAM 215
>gi|157146361|ref|YP_001453680.1| 23S rRNA m(2)G2445 methyltransferase [Citrobacter koseri ATCC
BAA-895]
gi|238686820|sp|A8AID1.1|RLMKL_CITK8 RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|157083566|gb|ABV13244.1| hypothetical protein CKO_02120 [Citrobacter koseri ATCC BAA-895]
Length = 702
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + DI +N+ + + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDIRVNVWLNKDTASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|88601443|ref|YP_501621.1| RNA methylase [Methanospirillum hungatei JF-1]
gi|88186905|gb|ABD39902.1| N2-methylguanosine tRNA methyltransferase [Methanospirillum
hungatei JF-1]
Length = 317
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F+ + P + ++ ++ +PG+ LDP CG G +E SL + D + +++
Sbjct: 155 FHPGVMMPRMIRALINMSGALPGEWILDPFCGTGGTLIEASLIGCNA--AGTDADREMIA 212
Query: 350 KTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNF-LLY 408
++ N+ V + R L F +D +V+DLP+G+ V N LY
Sbjct: 213 GSRKNLSAAMAG----------VADARHLPFPDNSIDHVVSDLPYGQSVTIIGNGLNDLY 262
Query: 409 RLFLIEIGKIVR 420
L EI ++V+
Sbjct: 263 HQALTEIKRVVK 274
>gi|433544056|ref|ZP_20500450.1| hypothetical protein D478_10150 [Brevibacillus agri BAB-2500]
gi|432184662|gb|ELK42169.1| hypothetical protein D478_10150 [Brevibacillus agri BAB-2500]
Length = 385
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 281 SLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
LH+R E LK T+A M+ L+ P VF+DP CG GTIP+E +L
Sbjct: 159 GLHKRGYRELIGTAPLKETMAAAMILLSRWKPDRVFMDPFCGSGTIPIEAAL 210
>gi|76801185|ref|YP_326193.1| hypothetical protein NP1066A [Natronomonas pharaonis DSM 2160]
gi|76557050|emb|CAI48624.1| tRNA (guanine(10),N(2))-dimethyltransferase [Natronomonas pharaonis
DSM 2160]
Length = 321
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 90/213 (42%), Gaps = 22/213 (10%)
Query: 228 GKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTS---LHR 284
G + + +ER G L D F VDLD D + + A VG T+T+ R
Sbjct: 91 GLADIDTQAAERRLGSVLVDRGFE-VDLDAPDHTLVALFSADAAAVGWLSTETTRDFTDR 149
Query: 285 RNIVE--FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGD 342
R + F ++ P A + +A P LDPMCG G I VE L+ V D
Sbjct: 150 RPTDKPFFQPGSMDPMDARAVANIAGAAPNVRILDPMCGTGGILVEAGLAGATPVGV--D 207
Query: 343 INEKLVLKTQANVLH--NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGS 400
K+V + N+ H G + R + +L F DG V D P+G++ S
Sbjct: 208 AQPKMVSGARQNLDHYLTDGAVLRG--------DATRLPFADDSFDGAVFDAPYGRQ--S 257
Query: 401 KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433
K L L + E + VR GR +L+ +DR
Sbjct: 258 KIEGQSLATL-VGEALEEVRRVAGRTVLI-ADR 288
>gi|152969534|ref|YP_001334643.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|378978016|ref|YP_005226157.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|386034157|ref|YP_005954070.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae KCTC
2242]
gi|419762633|ref|ZP_14288880.1| 23S rRNA methyltransferase protein [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|419971876|ref|ZP_14487306.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419978682|ref|ZP_14493977.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419989593|ref|ZP_14504568.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419994987|ref|ZP_14509795.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420004810|ref|ZP_14519442.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420010465|ref|ZP_14524938.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420014784|ref|ZP_14529089.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420019039|ref|ZP_14533234.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420025081|ref|ZP_14539091.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420031387|ref|ZP_14545208.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420039147|ref|ZP_14552785.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420045084|ref|ZP_14558557.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420050944|ref|ZP_14564238.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420056504|ref|ZP_14569660.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420061509|ref|ZP_14574496.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420066222|ref|ZP_14579024.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420074768|ref|ZP_14587359.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420080681|ref|ZP_14593090.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420082624|ref|ZP_14594919.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|424829952|ref|ZP_18254680.1| putative RNA methylase family UPF0020 [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|425077372|ref|ZP_18480475.1| ribosomal RNA large subunit methyltransferase L [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|425080787|ref|ZP_18483884.1| ribosomal RNA large subunit methyltransferase L [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|425088005|ref|ZP_18491098.1| ribosomal RNA large subunit methyltransferase L [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|428932230|ref|ZP_19005812.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae JHCK1]
gi|428939443|ref|ZP_19012552.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae VA360]
gi|449050063|ref|ZP_21731565.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae hvKP1]
gi|229560188|sp|A6T742.1|RLMKL_KLEP7 RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|150954383|gb|ABR76413.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|339761285|gb|AEJ97505.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae KCTC
2242]
gi|364517427|gb|AEW60555.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397351125|gb|EJJ44210.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397352814|gb|EJJ45892.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397364333|gb|EJJ56965.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397368760|gb|EJJ61365.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397369092|gb|EJJ61694.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397377800|gb|EJJ70026.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397378675|gb|EJJ70882.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397389700|gb|EJJ81633.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397397638|gb|EJJ89310.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397400256|gb|EJJ91901.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397403413|gb|EJJ94980.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397410313|gb|EJK01599.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397410540|gb|EJK01818.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397420603|gb|EJK11668.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397430492|gb|EJK21187.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397430513|gb|EJK21205.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397433465|gb|EJK24113.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397440120|gb|EJK30538.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397452081|gb|EJK42156.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|397744814|gb|EJK92025.1| 23S rRNA methyltransferase protein [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|405593081|gb|EKB66533.1| ribosomal RNA large subunit methyltransferase L [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|405602137|gb|EKB75279.1| ribosomal RNA large subunit methyltransferase L [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|405605558|gb|EKB78588.1| ribosomal RNA large subunit methyltransferase L [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|414707377|emb|CCN29081.1| putative RNA methylase family UPF0020 [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426304007|gb|EKV66162.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae VA360]
gi|426307303|gb|EKV69387.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae JHCK1]
gi|448876626|gb|EMB11610.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae hvKP1]
Length = 701
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A++ L ++ LH R + + +K +A +V + +P
Sbjct: 130 VDRESPDLRINVWLNKETAHISLDLSGEGLHLRGYRDGTGMAPIKENLAAAIVMRSGWVP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|410459674|ref|ZP_11313404.1| methyltransferase [Bacillus azotoformans LMG 9581]
gi|409929832|gb|EKN66875.1| methyltransferase [Bacillus azotoformans LMG 9581]
Length = 379
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 73/195 (37%), Gaps = 58/195 (29%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R E I LK T+A +V L + P F+DP CG GTIP+E
Sbjct: 150 ATLTIDTSGVGLHKRGYRAEQGIAPLKETLAATLVLLTNWHPDRPFVDPFCGSGTIPIEA 209
Query: 330 SL-------------------------------------SYPHTFFVCG-DINEKLVLKT 351
+L Y + G DI+ +++
Sbjct: 210 ALIGQNIAPGFNREFVSQNWHWIRQEDWDKAFEEAEDLAKYDQALDISGSDIDHRMIEIA 269
Query: 352 QANVLHNS-GNLNRELKVSPLVCNVRQLCFKPACVDG----IVTDLPFGKRVGSKSNNFL 406
+ N L G+ + N +Q+ K IV + P+G+R+G K
Sbjct: 270 KGNALEAGFGD----------IINFKQMQVKDFTTKKEYGVIVGNPPYGERLGEKEEVEH 319
Query: 407 LYRLFLIEIGKIVRP 421
+YR E+GK P
Sbjct: 320 MYR----EMGKAFEP 330
>gi|425090849|ref|ZP_18493934.1| ribosomal RNA large subunit methyltransferase L [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|405613585|gb|EKB86316.1| ribosomal RNA large subunit methyltransferase L [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
Length = 701
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A++ L ++ LH R + + +K +A +V + +P
Sbjct: 130 VDRESPDLRINVWLNKETAHISLDLSGEGLHLRGYRDGTGMAPIKENLAAAIVMRSGWVP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|354722832|ref|ZP_09037047.1| 23S rRNA m(2)G2445 methyltransferase [Enterobacter mori LMG 25706]
Length = 702
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+ + + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRENPDLRINVWLNGDTASISLDLSGAGLHLRGYRDRTGMAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|288936261|ref|YP_003440320.1| RNA methylase [Klebsiella variicola At-22]
gi|288890970|gb|ADC59288.1| putative RNA methylase [Klebsiella variicola At-22]
Length = 701
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A++ L ++ LH R + + +K +A +V + +P
Sbjct: 130 VDRESPDLRINVWLNKETAHISLDLSGEGLHLRGYRDGTGMAPIKENLAAAIVMRSGWVP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|238894004|ref|YP_002918738.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|402781510|ref|YP_006637056.1| 2-phospho-D-glycerate hydrolyase [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|238546320|dbj|BAH62671.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|402542391|gb|AFQ66540.1| 23S rRNA (guanine-N-2-) -methyltransferase rlmL [Klebsiella
pneumoniae subsp. pneumoniae 1084]
Length = 701
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A++ L ++ LH R + + +K +A +V + +P
Sbjct: 130 VDRESPDLRINVWLNKETAHISLDLSGEGLHLRGYRDGTGMAPIKENLAAAIVMRSGWVP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|425439994|ref|ZP_18820305.1| putative enzyme [Microcystis aeruginosa PCC 9717]
gi|389719650|emb|CCH96535.1| putative enzyme [Microcystis aeruginosa PCC 9717]
Length = 375
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 252 LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPI 310
VD ++ D+ IN I N + L + SLHRR + LK ++A +V L++
Sbjct: 130 FVDTENPDLQINAHIEKNLCVLSLDSSGHSLHRRGYHRAMGVAPLKESLAAALVELSAWQ 189
Query: 311 PGDVFLDPMCGGGTIPVECSL 331
LDP CG GTI +E +L
Sbjct: 190 DDMALLDPFCGSGTIVIEATL 210
>gi|365139471|ref|ZP_09345818.1| ribosomal RNA large subunit methyltransferase L [Klebsiella sp.
4_1_44FAA]
gi|424934183|ref|ZP_18352555.1| Ribosomal RNA large subunit methyltransferase L [Klebsiella
pneumoniae subsp. pneumoniae KpQ3]
gi|363654084|gb|EHL92999.1| ribosomal RNA large subunit methyltransferase L [Klebsiella sp.
4_1_44FAA]
gi|407808370|gb|EKF79621.1| Ribosomal RNA large subunit methyltransferase L [Klebsiella
pneumoniae subsp. pneumoniae KpQ3]
Length = 701
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A++ L ++ LH R + + +K +A +V + +P
Sbjct: 130 VDRESPDLRINVWLNKETAHISLDLSGEGLHLRGYRDGTGMAPIKENLAAAIVMRSGWVP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|401763057|ref|YP_006578064.1| 23S rRNA m(2)G2445 methyltransferase [Enterobacter cloacae subsp.
cloacae ENHKU01]
gi|400174591|gb|AFP69440.1| 23S rRNA m(2)G2445 methyltransferase [Enterobacter cloacae subsp.
cloacae ENHKU01]
Length = 702
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+ + + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRENPDLRINVWLNGDTASISLDLSGAGLHLRGYRDRTGMAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|399046767|ref|ZP_10738999.1| putative N6-adenine-specific DNA methylase [Brevibacillus sp.
CF112]
gi|398055155|gb|EJL47242.1| putative N6-adenine-specific DNA methylase [Brevibacillus sp.
CF112]
Length = 385
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 281 SLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
LH+R E LK T+A M+ L+ P VF+DP CG GTIP+E +L
Sbjct: 159 GLHKRGYRELIGTAPLKETMAAAMILLSRWKPDRVFMDPFCGSGTIPIEAAL 210
>gi|262039996|ref|ZP_06013261.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259042664|gb|EEW43670.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 701
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A++ L ++ LH R + + +K +A +V + +P
Sbjct: 130 VDRESPDLRINVWLNKETAHISLDLSGEGLHLRGYRDGTGMAPIKENLAAAIVMRSGWVP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|283784768|ref|YP_003364633.1| RNA methylase [Citrobacter rodentium ICC168]
gi|282948222|emb|CBG87789.1| putative RNA methylase [Citrobacter rodentium ICC168]
Length = 702
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + DI +N+ + + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDIRVNVWLNKDTASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|383318744|ref|YP_005379585.1| N2-methylguanosine tRNA methyltransferase [Methanocella conradii
HZ254]
gi|379320114|gb|AFC99066.1| N2-methylguanosine tRNA methyltransferase [Methanocella conradii
HZ254]
Length = 340
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353
L P I+ +V + S I LDPM G G I VE L + DI +K+ T+
Sbjct: 172 VLMPRISRAIVNM-SRIREGWMLDPMSGTGGILVEAELISDAIHVIGSDIQKKMAYGTRW 230
Query: 354 NVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNF-LLYRLFL 412
N+ H N + ++ S ++ K +D IVTD P+G+ K ++ +R +
Sbjct: 231 NLRHYGKNYDVMMQDS------LKMGIKTNSIDAIVTDFPYGQSTPIKGSSLEAFHRDTI 284
Query: 413 IEIGKIVRP 421
EI ++++P
Sbjct: 285 KEIFRVLKP 293
>gi|146311117|ref|YP_001176191.1| 23S rRNA m(2)G2445 methyltransferase [Enterobacter sp. 638]
gi|229560152|sp|A4W8W0.1|RLMKL_ENT38 RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|145317993|gb|ABP60140.1| 23S rRNA m(2)G-2445 methyltransferase [Enterobacter sp. 638]
Length = 702
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+ + A++ L + LH+R + I +K +A +V + P
Sbjct: 130 VDRENPDLRINVWLNKETAHISLDLCGEGLHQRGYRDRAGIAPIKENLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|344210412|ref|YP_004794732.1| putative RNA methylase [Haloarcula hispanica ATCC 33960]
gi|343781767|gb|AEM55744.1| putative RNA methylase [Haloarcula hispanica ATCC 33960]
Length = 343
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 69/158 (43%), Gaps = 22/158 (13%)
Query: 232 VTSMESERAFGGKLNDTYFWLVDLDD---------YDIDINLQIRYNEAYVGLP-VTQTS 281
+ + ++ER GG L D F VDLDD D D + + EA L +T S
Sbjct: 93 IDTQQAERTLGGVLTDRGF-AVDLDDPDHVLYAYLSDPDGDEEGGTGEACCALGWLTAES 151
Query: 282 LH---RRNIVE---FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH 335
+ R + F ++ P A +V +A P LDPMCG G + +E L
Sbjct: 152 VRDFGGRQPTDRPFFQPGSMDPLEARALVNIAGAGPDATILDPMCGTGGLLLEAGLV--G 209
Query: 336 TFFVCGDINEKLVLKTQANV---LHNSGNLNRELKVSP 370
V GD EK+V T+ N+ L +G+ NR+ P
Sbjct: 210 ADVVGGDAQEKMVSGTRENLSYALDGNGHPNRDAYPDP 247
>gi|424813809|ref|ZP_18238987.1| putative DNA modification methylase [Candidatus Nanosalina sp.
J07AB43]
gi|339757425|gb|EGQ42682.1| putative DNA modification methylase [Candidatus Nanosalina sp.
J07AB43]
Length = 276
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 11/117 (9%)
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCG-DINEKLVLKTQ 352
+L P+IA +V L+ PG+ LDP CG G I +E L VCG D+ ++V +
Sbjct: 126 SLGPSIARVLVNLSGLKPGEYLLDPFCGTGGILIEAGLC---GIGVCGVDVKGEMVKGCK 182
Query: 353 ANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFG---KRVGSKSNNFL 406
N L G ++ ++K V +L K IVTDLP+G K+ S +FL
Sbjct: 183 EN-LEEYGIISHDIKQGE-VSESTELFDKN--FSAIVTDLPYGQASKKTDSAVEDFL 235
>gi|448536156|ref|ZP_21622401.1| RNA methylase [Halorubrum hochstenium ATCC 700873]
gi|445702599|gb|ELZ54543.1| RNA methylase [Halorubrum hochstenium ATCC 700873]
Length = 362
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 71/195 (36%), Gaps = 33/195 (16%)
Query: 228 GKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRY-----NEAYVGLPVTQTSL 282
G V++ +ERA GG L D F VDLDD D + ++A G +
Sbjct: 90 GTAGVSTAAAERALGGVLVDRGF-DVDLDDPDHVLRALFSAGPRADHDAVTGADGGDADV 148
Query: 283 HRRNIVE----------------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIP 326
V F ++ P A LA PG LDPMCG G +P
Sbjct: 149 CALGWVAAEATRDFAPDPTDRPFFQPGSMAPADARAYANLAGAAPGRTLLDPMCGTGGLP 208
Query: 327 VECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ-----LCFK 381
+E L V D K+V + N+ G+ P +V + L
Sbjct: 209 LEAGLVGADA--VACDAQAKMVRGARENLREYVGD----PAAGPPDWHVARGDATALPLP 262
Query: 382 PACVDGIVTDLPFGK 396
VDG+ D P+G+
Sbjct: 263 DDAVDGVAFDAPYGR 277
>gi|377576286|ref|ZP_09805270.1| ribosomal RNA large subunit methyltransferase L [Escherichia
hermannii NBRC 105704]
gi|377542318|dbj|GAB50435.1| ribosomal RNA large subunit methyltransferase L [Escherichia
hermannii NBRC 105704]
Length = 705
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIP 311
VD D D+ IN+ + A + L ++ LH+R + +K T+A +V+ + P
Sbjct: 130 VDKDQPDLRINVWLNKETASIALDLSGDGLHQRGYRDATGQAPIKETLAAAIVQRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G +DPMCG GT+ +E ++
Sbjct: 190 GTPLIDPMCGSGTLLIEAAM 209
>gi|340623330|ref|YP_004741783.1| putative RNA methylase [Methanococcus maripaludis X1]
gi|339903598|gb|AEK19040.1| putative RNA methylase [Methanococcus maripaludis X1]
Length = 350
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 20/183 (10%)
Query: 234 SMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSL--------HRR 285
SME ER GG + V L + + + I ++ Y G+ + + + H R
Sbjct: 121 SMEIERKLGGIIKKKTSARVSLKNPSKTVKVVISNDKMYTGIVIEKRDVEYFQNNRPHLR 180
Query: 286 NIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINE 345
F+ + P +A +V L+ G++ LDP CG G +E + + DI+E
Sbjct: 181 --AYFHPGCIMPKLARCLVNLSRVKEGEIVLDPFCGTGGFLIEA--GFLGCKLIGSDIDE 236
Query: 346 KLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-----FKPACVDGIVTDLPFGKRVGS 400
++V N+ N+ +L++++ +S + + + K +DGIVTD P+G
Sbjct: 237 QMVNGALLNL--NTYDLSKQV-ISIKHSDAKNVSKYLEDLKIEKIDGIVTDPPYGISTSK 293
Query: 401 KSN 403
K +
Sbjct: 294 KGD 296
>gi|432830924|ref|ZP_20064506.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE135]
gi|431379270|gb|ELG64204.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
KTE135]
Length = 702
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG T+ +E ++
Sbjct: 190 GTPLLDPMCGSATLLIEAAM 209
>gi|452990836|emb|CCQ97894.1| putative RNA methyltransferase YpsC [Clostridium ultunense Esp]
Length = 383
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 258 YDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNI-TTLKPTIAYNMVRLASPIPGDVFL 316
Y I+++L N+A + L T SLH+R E +K T+A +++ L+ P F
Sbjct: 138 YTIEVSLL--KNKALITLDTTGPSLHKRGYRELAAQAPIKETLAASLILLSRWSPDRPFH 195
Query: 317 DPMCGGGTIPVECSL 331
DP+CG GTIP+E L
Sbjct: 196 DPVCGSGTIPIEVVL 210
>gi|417152878|ref|ZP_11991669.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
96.0497]
gi|417580218|ref|ZP_12231035.1| hypothetical protein ECSTECB2F1_0873 [Escherichia coli STEC_B2F1]
gi|417666158|ref|ZP_12315716.1| hypothetical protein ECSTECO31_0963 [Escherichia coli STEC_O31]
gi|419369266|ref|ZP_13910392.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC14A]
gi|345342563|gb|EGW74957.1| hypothetical protein ECSTECB2F1_0873 [Escherichia coli STEC_B2F1]
gi|378220941|gb|EHX81192.1| ribosomal RNA large subunit methyltransferase L [Escherichia coli
DEC14A]
gi|386169602|gb|EIH36110.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
96.0497]
gi|397786262|gb|EJK97102.1| hypothetical protein ECSTECO31_0963 [Escherichia coli STEC_O31]
Length = 702
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG T+ +E ++
Sbjct: 190 GTPLLDPMCGSATLLIEAAM 209
>gi|422843699|ref|ZP_16890409.1| site-specific DNA-methyltransferase [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
gi|325686227|gb|EGD28272.1| site-specific DNA-methyltransferase [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length = 374
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 41/198 (20%)
Query: 258 YDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPG-DVF 315
Y +D++ I + + L T SL +R +E LK A ++++L +P G F
Sbjct: 138 YQLDVH--IYKDTVRLSLDTTGESLFKRGYRIEHGGAPLKENFAASLIKL-TPYDGTHPF 194
Query: 316 LDPMCGGGTIPVECSL----SYPHTF---------FVCGDINEKLVLKTQANVLHNSGNL 362
+DPMCG GT+P+E +L P T+ + ++E+L+ + ++ V +
Sbjct: 195 IDPMCGSGTLPIEAALIARNIAPGTWRKFAFDDFDWFDPRLHEELLKEAKSQVKPAEAPI 254
Query: 363 NRE------LKVSPLVCN----VRQLCFKPACVDGIVTDL---------PFGKRVGSKSN 403
L+V+ L + ++ + FK V TDL P+GKR+ K
Sbjct: 255 WASDIDQSILEVAKLNAHNAGVLQDIRFKQVAVKDFTTDLENGVIVSNPPYGKRLKDKQG 314
Query: 404 NFLLYRLFLIEIGKIVRP 421
LYR ++G+++RP
Sbjct: 315 AEELYR----QMGEVLRP 328
>gi|379012699|ref|YP_005270511.1| methyltransferase [Acetobacterium woodii DSM 1030]
gi|375303488|gb|AFA49622.1| methyltransferase [Acetobacterium woodii DSM 1030]
Length = 405
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I++QI +E + L + + L++R ++ N LK TI+ +V L+ P FLDP+C
Sbjct: 142 IHIQILKDEVTLSLDTSGSGLNKRGYRQYGNEAPLKETISAALVYLSHWRPDRFFLDPLC 201
Query: 321 GGGTIPVECSL 331
G GTI +E ++
Sbjct: 202 GSGTIVIEAAM 212
>gi|409351545|ref|ZP_11234213.1| N6-adenine-specific DNA methylase [Lactobacillus equicursoris CIP
110162]
gi|407876698|emb|CCK86271.1| N6-adenine-specific DNA methylase [Lactobacillus equicursoris CIP
110162]
Length = 374
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 94/211 (44%), Gaps = 40/211 (18%)
Query: 258 YDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFL 316
Y +DI+ I ++A + L T SL +R +E LK A ++++L F+
Sbjct: 138 YQLDIH--IYQDKARLSLDTTGDSLFKRGYRIEHGGAPLKENFAASLIKLTIYDGTHPFV 195
Query: 317 DPMCGGGTIPVECSL-----------SYPHTFFVCGD-------INEKLVLKTQANVLHN 358
DPMCG GT+P+E ++ + F D I E ++T A
Sbjct: 196 DPMCGSGTLPIEAAMIAKNIAPGLKRDFSFDKFDWFDQKLHQNLIEEAKSMQTPAQAPIW 255
Query: 359 SGNLNRE-LKVSPLVCN----VRQLCFKPACVDGIVTDL---------PFGKRVGSKSNN 404
+ ++++ L+V+ L + ++ + FK V TDL P+GKR+ +
Sbjct: 256 ASDIDQSILEVAKLNAHNAGVLQDIRFKQVAVKDFKTDLTNGVIVSNPPYGKRLKDRQGA 315
Query: 405 FLLYRLFLIEIGKIVRPQIGRA-ILLTSDRK 434
LY ++G++++P + LT+D+K
Sbjct: 316 EALYE----QMGEVLKPLSSFSQYYLTADQK 342
>gi|448330304|ref|ZP_21519587.1| RNA methylase [Natrinema versiforme JCM 10478]
gi|445611983|gb|ELY65724.1| RNA methylase [Natrinema versiforme JCM 10478]
Length = 364
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 16/118 (13%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F ++ P +A + +A PG LDPMCG G + VE L D K+
Sbjct: 184 FQPGSMDPLLARAVANVAGARPGAAILDPMCGTGGVLVEAGLVGADVIGT--DAQAKMAA 241
Query: 350 KTQANVLHNSGNLNRELKVSPLVC----------NVRQLCFKPACVDGIVTDLPFGKR 397
Q N+ H L R+ + SP + QL VDG+V D P+G++
Sbjct: 242 GAQENLGH---FLERD-EPSPTGVSRGSWHVGRGDATQLPLADDAVDGVVFDAPYGRQ 295
>gi|408421657|ref|YP_006763071.1| RNA methylase [Desulfobacula toluolica Tol2]
gi|405108870|emb|CCK82367.1| predicted RNA methylase [Desulfobacula toluolica Tol2]
Length = 401
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
VD D I INL + N A + + + +LH+R E +++ ++ T+A +++RL S
Sbjct: 158 VDAKDPYIIINLHLHRNMATLSIDASGGALHKRGYREESVSAPMQETVAASIIRL-SEWD 216
Query: 312 GDVFL-DPMCGGGTIPVECSLSY 333
G V L DPMCG GT+ E ++Y
Sbjct: 217 GTVPLYDPMCGSGTLLCEALMAY 239
>gi|402298105|ref|ZP_10817824.1| hypothetical protein BalcAV_04355 [Bacillus alcalophilus ATCC
27647]
gi|401726665|gb|EJS99883.1| hypothetical protein BalcAV_04355 [Bacillus alcalophilus ATCC
27647]
Length = 379
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I + + + A + L + LH+R N LK T+A M+ L S P F+DP C
Sbjct: 140 IEVALHKDVATLTLDSSGVGLHKRGYRSLHNQAPLKETMAAAMIMLTSWRPDRPFVDPFC 199
Query: 321 GGGTIPVECSL 331
G GTIP+E ++
Sbjct: 200 GSGTIPIEAAM 210
>gi|395646092|ref|ZP_10433952.1| RNA methylase [Methanofollis liminatans DSM 4140]
gi|395442832|gb|EJG07589.1| RNA methylase [Methanofollis liminatans DSM 4140]
Length = 315
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F+ + P A ++ L+ +PG+V DP CG G + E V D + ++
Sbjct: 153 FHPGVMMPRTARALLNLSLVMPGEVMADPFCGTGGMLEEGRRI--GVRVVGSDFDRTMIA 210
Query: 350 KTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFL-LY 408
++ NV +L L+ + L + VD +VTDLP+G+ V NF LY
Sbjct: 211 GSRLNV--PEADL--------LLADATALPLRTGSVDAVVTDLPYGQSVCVLGENFTRLY 260
Query: 409 RLFLIEIGKIVR 420
L EIG++++
Sbjct: 261 EGALDEIGRVLK 272
>gi|288801266|ref|ZP_06406721.1| methylase [Prevotella sp. oral taxon 299 str. F0039]
gi|288331877|gb|EFC70360.1| methylase [Prevotella sp. oral taxon 299 str. F0039]
Length = 486
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+ + + DI +N+ I N+A + L + SLHRR E L +A M+ L S
Sbjct: 131 ISISNPDIRLNIHIADNKATLSLDSSGESLHRRGYRQETTEAPLNEVLAAGMI-LMSGWK 189
Query: 312 GDV-FLDPMCGGGTIPVECSL 331
G+ F+DPMCG GT+ +E +L
Sbjct: 190 GETDFIDPMCGSGTLLIEAAL 210
>gi|296109615|ref|YP_003616564.1| THUMP domain protein [methanocaldococcus infernus ME]
gi|295434429|gb|ADG13600.1| THUMP domain protein [Methanocaldococcus infernus ME]
Length = 326
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGL 275
F V CNR G+H+ TS E ERA G K+ + + V L ++D +N++I ++AY+ L
Sbjct: 85 FVVRCNRRGRHSFTSEELERALGEKIRELGYK-VSLKNFDFKVNVEILQDKAYISL 139
>gi|15922554|ref|NP_378223.1| thiamine biosynthesis protein ThiI [Sulfolobus tokodaii str. 7]
gi|20140701|sp|Q96YE5.1|THII_SULTO RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
carrier protein ThiS sulfurtransferase; AltName:
Full=Thiamine biosynthesis protein ThiI; AltName:
Full=tRNA 4-thiouridine synthase
gi|15623344|dbj|BAB67332.1| putative thiamine biosynthesis protein ThiI [Sulfolobus tokodaii
str. 7]
Length = 368
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 219 KFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYV----- 273
KF + RVGKH TS+++ + G L Y VDL++ +I+I++ IR + AYV
Sbjct: 96 KFAIRVRRVGKHNFTSLDAAKVIGSSLY-PYSSGVDLENPEIEIHVDIRQDYAYVYDKVY 154
Query: 274 ----GLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPI 310
GLP+ T R IV F+ P + M++ S +
Sbjct: 155 EGARGLPIGTTG---RTIVLFSGGFDSPIATWMMMKRGSSV 192
>gi|408411259|ref|ZP_11182428.1| N6-adenine-specific DNA methylase [Lactobacillus sp. 66c]
gi|407874552|emb|CCK84234.1| N6-adenine-specific DNA methylase [Lactobacillus sp. 66c]
Length = 374
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 94/211 (44%), Gaps = 40/211 (18%)
Query: 258 YDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFL 316
Y +DI+ I ++A + L T SL +R +E LK A ++++L F+
Sbjct: 138 YQLDIH--IYQDKARLSLDTTGDSLFKRGYRIEHGGAPLKENFAASLIKLTIYDGTHPFV 195
Query: 317 DPMCGGGTIPVECSL-----------SYPHTFFVCGD-------INEKLVLKTQANVLHN 358
DPMCG GT+P+E ++ + F D I E ++T A
Sbjct: 196 DPMCGSGTLPIEAAMIAKNIAPGLKRDFSFDKFDWFDQKLHQNLIEEAKSMQTPAEAPIW 255
Query: 359 SGNLNRE-LKVSPLVCN----VRQLCFKPACVDGIVTDL---------PFGKRVGSKSNN 404
+ ++++ L+V+ L + ++ + FK V TDL P+GKR+ +
Sbjct: 256 ASDIDQSILEVAKLNAHNAGVLQDIRFKQVAVKDFKTDLTNGVIVSNPPYGKRLKDRQGA 315
Query: 405 FLLYRLFLIEIGKIVRPQIGRA-ILLTSDRK 434
LY ++G++++P + LT+D+K
Sbjct: 316 EALYE----QMGEVLKPLSSFSQYYLTADQK 342
>gi|340345761|ref|ZP_08668893.1| Putative RNA methylase [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339520902|gb|EGP94625.1| Putative RNA methylase [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 315
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 78/190 (41%), Gaps = 12/190 (6%)
Query: 236 ESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTL 295
E E+A G + V L++ DI I L E + G R ++ + L
Sbjct: 103 ELEKAMGDMITKFSKAQVSLENPDISIYLIFTDQENFFGFSKRYEIKSRPKKIKKHPHEL 162
Query: 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANV 355
+ M+ LA G+ DP CG GT +E H + D +EK+ ++ N+
Sbjct: 163 DWKLTRAMINLAGLKEGETVCDPFCGTGTTLLEAESMGIHA--IGLDFDEKMCKISKENL 220
Query: 356 LHNSGNLNRELKVSPLV-CNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIE 414
N N S ++ + QL DGIVTDLP+G S N L + F+
Sbjct: 221 DANQYN-------SKIIKSDFSQLTKMINEFDGIVTDLPYGTASKSSENPEELLKKFVSI 273
Query: 415 IGKIVRPQIG 424
+ K R +IG
Sbjct: 274 LPK--RKKIG 281
>gi|393780842|ref|ZP_10369048.1| RNA methylase, PF01170 family [Capnocytophaga sp. oral taxon 412
str. F0487]
gi|392607956|gb|EIW90822.1| RNA methylase, PF01170 family [Capnocytophaga sp. oral taxon 412
str. F0487]
Length = 382
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD+ D++I++ I+ NE V L + SLH+R NI + +A ++ L+
Sbjct: 127 VDVLHPDLEIHIHIQRNEVIVSLDSSGNSLHQRGYRTATNIAPINEVLAAGILLLSGWQG 186
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GT +E ++
Sbjct: 187 QCDFLDPMCGSGTFLIEAAM 206
>gi|420369110|ref|ZP_14869835.1| ribosomal RNA large subunit methyltransferase L [Shigella flexneri
1235-66]
gi|391321436|gb|EIQ78159.1| ribosomal RNA large subunit methyltransferase L [Shigella flexneri
1235-66]
Length = 702
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + + A + L ++ LH+R + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKDTASIALDLSGDGLHQRGYRDRAGQAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|315225685|ref|ZP_07867492.1| RNA methylase family protein [Capnocytophaga ochracea F0287]
gi|420159337|ref|ZP_14666142.1| RNA methylase, PF01170 family [Capnocytophaga ochracea str. Holt
25]
gi|314944348|gb|EFS96390.1| RNA methylase family protein [Capnocytophaga ochracea F0287]
gi|394762387|gb|EJF44628.1| RNA methylase, PF01170 family [Capnocytophaga ochracea str. Holt
25]
Length = 388
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD+ D++I++ I+ NE V L + SLH+R NI + +A ++ L+
Sbjct: 133 VDVLHPDLEIHIHIQRNEVIVSLDSSGNSLHQRGYRTATNIAPINEVLAAGILLLSGWQG 192
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GT +E ++
Sbjct: 193 QCDFLDPMCGSGTFLIEAAM 212
>gi|320540476|ref|ZP_08040126.1| putative 23S rRNA mG2445 methyltransferase, SAM-dependent [Serratia
symbiotica str. Tucson]
gi|320029407|gb|EFW11436.1| putative 23S rRNA mG2445 methyltransferase, SAM-dependent [Serratia
symbiotica str. Tucson]
Length = 718
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ ++ N A V L ++ LH+R + LK +A +V+ + PG LD
Sbjct: 148 DIRVNVFLQRNIASVALDLSGEGLHQRGYRDLAGQAPLKENLAAAIVQRSGWQPGAPMLD 207
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+ +E ++
Sbjct: 208 PMCGSGTLLIEAAM 221
>gi|421844344|ref|ZP_16277502.1| 23S rRNA m(2)G2445 methyltransferase [Citrobacter freundii ATCC
8090 = MTCC 1658]
gi|411774499|gb|EKS57989.1| 23S rRNA m(2)G2445 methyltransferase [Citrobacter freundii ATCC
8090 = MTCC 1658]
Length = 702
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + + A + L ++ LH+R + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKDTASIALDLSGDGLHQRGYRDRAGQAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|307564654|ref|ZP_07627184.1| THUMP domain protein [Prevotella amnii CRIS 21A-A]
gi|307346582|gb|EFN91889.1| THUMP domain protein [Prevotella amnii CRIS 21A-A]
Length = 484
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ I +A + L + SLHRR + ++ L +A ++ + F+D
Sbjct: 139 DIRLNIHIAGFDATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGLILMTGWRGESDFID 198
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+P+E +L
Sbjct: 199 PMCGSGTLPIEAAL 212
>gi|225174410|ref|ZP_03728409.1| putative RNA methylase [Dethiobacter alkaliphilus AHT 1]
gi|225170195|gb|EEG78990.1| putative RNA methylase [Dethiobacter alkaliphilus AHT 1]
Length = 382
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 258 YDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNI-TTLKPTIAYNMVRLASPIPGDVFL 316
Y I++ L + A + + + LH+R E L+ T+A MVRL++ V
Sbjct: 138 YKIEVGLL--KDRATLTIDTSGAGLHKRGYRELTAKAPLRETLAAAMVRLSNWPADRVLA 195
Query: 317 DPMCGGGTIPVECSL 331
DP CG GTIPVE +L
Sbjct: 196 DPFCGSGTIPVEAAL 210
>gi|283833768|ref|ZP_06353509.1| putative methylase [Citrobacter youngae ATCC 29220]
gi|291070429|gb|EFE08538.1| putative methylase [Citrobacter youngae ATCC 29220]
Length = 702
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + + A + L ++ LH+R + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKDTASIALDLSGDGLHQRGYRDRAGQAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|333926575|ref|YP_004500154.1| ribosomal RNA large subunit methyltransferase L [Serratia sp. AS12]
gi|333931528|ref|YP_004505106.1| ribosomal RNA large subunit methyltransferase L [Serratia
plymuthica AS9]
gi|386328398|ref|YP_006024568.1| Ribosomal RNA large subunit methyltransferase L [Serratia sp. AS13]
gi|333473135|gb|AEF44845.1| Ribosomal RNA large subunit methyltransferase L [Serratia
plymuthica AS9]
gi|333490635|gb|AEF49797.1| Ribosomal RNA large subunit methyltransferase L [Serratia sp. AS12]
gi|333960731|gb|AEG27504.1| Ribosomal RNA large subunit methyltransferase L [Serratia sp. AS13]
Length = 718
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ ++ + A V L ++ LH+R + LK ++A +V+ + PG LD
Sbjct: 148 DIRVNVFLQRDMASVALDLSGEGLHQRGYRDLTGQAPLKESLAAAIVQRSGWQPGTPMLD 207
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+ +E ++
Sbjct: 208 PMCGSGTLLIEAAM 221
>gi|300812445|ref|ZP_07092875.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300496612|gb|EFK31704.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 374
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 41/198 (20%)
Query: 258 YDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPG-DVF 315
Y +D++ I + + L T SL +R +E LK A ++++L +P G F
Sbjct: 138 YQLDVH--IYKDTVRLSLDTTGESLFKRGYRIEHGGAPLKENFAASLIKL-TPYDGTHPF 194
Query: 316 LDPMCGGGTIPVECSL----SYPHTF---------FVCGDINEKLVLKTQANVLHNSGNL 362
+DPMCG GT+P+E +L P T+ + ++E+L+ + ++ V +
Sbjct: 195 IDPMCGSGTLPIEAALIARNIAPGTWRKFAFDDFDWFDPSLHEELLEEAKSQVKPAEAPI 254
Query: 363 NRE------LKVSPLVCN----VRQLCFKPACVDGIVTDL---------PFGKRVGSKSN 403
L+V+ L + ++ + FK V TDL P+GKR+ K
Sbjct: 255 WASDIDQSILEVAKLNAHNAGVLQDIRFKQVAVKDFTTDLENGVIVSNPPYGKRLKDKQG 314
Query: 404 NFLLYRLFLIEIGKIVRP 421
LYR ++G+++RP
Sbjct: 315 VEELYR----QMGEVLRP 328
>gi|150024822|ref|YP_001295648.1| modification methyltransferase [Flavobacterium psychrophilum
JIP02/86]
gi|149771363|emb|CAL42832.1| Probable modification methyltransferase [Flavobacterium
psychrophilum JIP02/86]
Length = 390
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ I ++ V L + SLH+R NI + +A M+ L+
Sbjct: 132 VDKNFPDLRINIHIDKDQVSVALDTSGASLHQRGYKTATNIAPINEVLAAGMLLLSGWEG 191
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GTI E ++
Sbjct: 192 QGHFIDPMCGSGTILAEAAM 211
>gi|455642381|gb|EMF21547.1| 23S rRNA m(2)G2445 methyltransferase [Citrobacter freundii GTC
09479]
Length = 702
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + + A + L ++ LH+R + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKDTASIALDLSGDGLHQRGYRDRAGQAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|381405067|ref|ZP_09929751.1| 23S rRNA m(2)G2445 methyltransferase [Pantoea sp. Sc1]
gi|380738266|gb|EIB99329.1| 23S rRNA m(2)G2445 methyltransferase [Pantoea sp. Sc1]
Length = 704
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD + DI IN+ + + A + L ++ +SLH+R + LK +A +V + P
Sbjct: 130 VDREQADIRINVWLNDDRASIALDLSGSSLHQRGYRQQTGQAPLKENLAAAIVLRSGWEP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
+DPMCG GT+ +E +L
Sbjct: 190 STPLIDPMCGSGTLLIEAAL 209
>gi|237730904|ref|ZP_04561385.1| 23S rRNA m(2) methyltransferase [Citrobacter sp. 30_2]
gi|365105691|ref|ZP_09334840.1| ribosomal RNA large subunit methyltransferase L [Citrobacter
freundii 4_7_47CFAA]
gi|226906443|gb|EEH92361.1| 23S rRNA m(2) methyltransferase [Citrobacter sp. 30_2]
gi|363643205|gb|EHL82529.1| ribosomal RNA large subunit methyltransferase L [Citrobacter
freundii 4_7_47CFAA]
Length = 702
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + + A + L ++ LH+R + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKDTASIALDLSGDGLHQRGYRDRAGQAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|395227623|ref|ZP_10405949.1| 23S rRNA m(2) methyltransferase [Citrobacter sp. A1]
gi|424728673|ref|ZP_18157278.1| 23s rrna m methyltransferase [Citrobacter sp. L17]
gi|394718951|gb|EJF24572.1| 23S rRNA m(2) methyltransferase [Citrobacter sp. A1]
gi|422896544|gb|EKU36326.1| 23s rrna m methyltransferase [Citrobacter sp. L17]
Length = 702
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + + A + L ++ LH+R + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKDTASIALDLSGDGLHQRGYRDRAGQAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|429745888|ref|ZP_19279270.1| THUMP domain protein [Capnocytophaga sp. oral taxon 380 str. F0488]
gi|429167637|gb|EKY09538.1| THUMP domain protein [Capnocytophaga sp. oral taxon 380 str. F0488]
Length = 388
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD+ D++I++ I+ NE V L + SLH+R NI + +A ++ L+
Sbjct: 133 VDVLHPDLEIHIHIQRNEVIVSLDSSGNSLHQRGYRTATNIAPINEVLAAGILLLSGWQG 192
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GT +E ++
Sbjct: 193 QCDFLDPMCGSGTFLIEAAM 212
>gi|429754112|ref|ZP_19286857.1| THUMP domain protein [Capnocytophaga sp. oral taxon 326 str. F0382]
gi|429170331|gb|EKY12019.1| THUMP domain protein [Capnocytophaga sp. oral taxon 326 str. F0382]
Length = 386
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD+ D+ I++ I+ NE V L + TSLH+R NI + +A ++ ++
Sbjct: 133 VDVLHPDVAIHIHIQRNEVIVSLDSSGTSLHQRGYRTATNIAPINEVLAAGILIMSGWQG 192
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GT +E ++
Sbjct: 193 QCDFLDPMCGSGTFLIEAAM 212
>gi|410720334|ref|ZP_11359690.1| TIGR01177 family protein [Methanobacterium sp. Maddingley MBC34]
gi|410601116|gb|EKQ55636.1| TIGR01177 family protein [Methanobacterium sp. Maddingley MBC34]
Length = 343
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 67/154 (43%), Gaps = 24/154 (15%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTS--------LHRRNIVEFNITTLKPTIAYNMV 304
V+L+ I I +R E VG + Q S H+R F ++ P +A MV
Sbjct: 129 VNLEYPSIFIRTILRDGEVIVGQRIGQISKKHFFNLKPHKRPF--FYPGSMSPKLARCMV 186
Query: 305 RLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH---NSGN 361
L G LDP CG G I +E + + DI+ K+V T+ N+ H +
Sbjct: 187 NLTRIKKGQTLLDPFCGTGGILIEAGIIGARV--IGTDIDYKMVKGTKENLEHCGVGDYH 244
Query: 362 LNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFG 395
+ RE + R+L P VD IVTD P+G
Sbjct: 245 VFRE--------DARKLEL-PTKVDAIVTDPPYG 269
>gi|373464363|ref|ZP_09555902.1| hypothetical protein HMPREF9104_01609 [Lactobacillus kisonensis
F0435]
gi|371762565|gb|EHO51094.1| hypothetical protein HMPREF9104_01609 [Lactobacillus kisonensis
F0435]
Length = 327
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 89/206 (43%), Gaps = 39/206 (18%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
+ + I + + L T SL +R VE LK +A +V L + P FLDP C
Sbjct: 80 LEVAISKDHVMITLNTTGASLFKRGYRVEKGEAPLKENMAAALVMLTNWYPDVPFLDPFC 139
Query: 321 GGGTIPVECSL---SYPHTF---FVCG-----DINEKLVLKTQANVLHN----------- 358
G GTIP+E +L + F F+C D N ++ +A+ +
Sbjct: 140 GSGTIPIEAALIGRNIAPGFNRDFICEKWPWIDANMVQRVRDEADAQADYDTELDISASD 199
Query: 359 -SGNL----NRELKVSPLVCNV--RQLC---FKPACVDGIVT-DLPFGKRVGSKSNNFLL 407
GN+ R + L+ ++ +QL FK V+G+V + P+G+R+ L
Sbjct: 200 IDGNMIDISKRNAEEVGLLDDIHFKQLAVADFKTDKVNGVVVGNPPYGQRMSDAQRAHEL 259
Query: 408 YRLFLIEIGKIVRPQIGRA-ILLTSD 432
YR ++GK +P + LTSD
Sbjct: 260 YR----QMGKAFKPLTSWSKYFLTSD 281
>gi|332227279|ref|XP_003262820.1| PREDICTED: THUMP domain-containing protein 2 isoform 2 [Nomascus
leucogenys]
Length = 303
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 21/167 (12%)
Query: 150 NDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKG-------DLQNQELKEIDINSMCS 202
N+I+ K I I++ C+ E Q+ +E+ + Q +E + DI
Sbjct: 140 NEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRGFTTKSENFQEEEFQN-DIEKAID 198
Query: 203 SQNQKTNFTNPEENLLKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDI 260
+ NQ N L FRV+C G T+ E + G + + W DL + +
Sbjct: 199 THNQ---------NDLTFRVSCRCSGTIGKAFTAQEVGKVIGIAIMKHFGWKADLRNPKL 249
Query: 261 DINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLA 307
++ + + + VG+PV + SL R ++ L+ TIA+ M LA
Sbjct: 250 EVFIHLNDIYSVVGIPVFRVSLASRAYIK--TAGLRSTIAWAMASLA 294
>gi|256820248|ref|YP_003141527.1| RNA methylase [Capnocytophaga ochracea DSM 7271]
gi|256581831|gb|ACU92966.1| putative RNA methylase [Capnocytophaga ochracea DSM 7271]
Length = 388
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD+ D++I++ I+ NE V L + SLH+R NI + +A ++ L+
Sbjct: 133 VDVLHPDLEIHIHIQRNEVIVSLDSSGNSLHQRGYRTATNIAPINEVLAAGILLLSGWQG 192
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GT +E ++
Sbjct: 193 QCDFLDPMCGSGTFLIEAAM 212
>gi|157369986|ref|YP_001477975.1| 23S rRNA m(2)G2445 methyltransferase [Serratia proteamaculans 568]
gi|229560171|sp|A8GCK7.1|RLMKL_SERP5 RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|157321750|gb|ABV40847.1| putative RNA methylase [Serratia proteamaculans 568]
Length = 706
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ ++ + A V L ++ LH+R + LK ++A +V+ + PG LD
Sbjct: 136 DIRVNVFLQRDMASVALDLSGEGLHQRGYRDLTGQAPLKESLAAAIVQRSGWQPGTPMLD 195
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+ +E ++
Sbjct: 196 PMCGSGTLLIEAAM 209
>gi|429756598|ref|ZP_19289186.1| THUMP domain protein [Capnocytophaga sp. oral taxon 324 str. F0483]
gi|429171013|gb|EKY12662.1| THUMP domain protein [Capnocytophaga sp. oral taxon 324 str. F0483]
Length = 388
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD+ D++I++ I+ NE V L + SLH+R NI + +A ++ L+
Sbjct: 133 VDVLHPDLEIHIHIQRNEVIVSLDSSGNSLHQRGYRTATNIAPINEVLAAGILLLSGWQG 192
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GT +E ++
Sbjct: 193 QCDFLDPMCGSGTFLIEAAM 212
>gi|420148850|ref|ZP_14656039.1| RNA methylase, PF01170 family [Capnocytophaga sp. oral taxon 335
str. F0486]
gi|394754685|gb|EJF38025.1| RNA methylase, PF01170 family [Capnocytophaga sp. oral taxon 335
str. F0486]
Length = 388
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD+ D++I++ I+ NE V L + SLH+R NI + +A ++ L+
Sbjct: 133 VDVLHPDLEIHIHIQRNEVIVSLDSSGNSLHQRGYRTATNIAPINEVLAAGILLLSGWQG 192
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GT +E ++
Sbjct: 193 QCDFLDPMCGSGTFLIEAAM 212
>gi|339998866|ref|YP_004729749.1| hypothetical protein SBG_0863 [Salmonella bongori NCTC 12419]
gi|339512227|emb|CCC29958.1| conserved hypothetical protein [Salmonella bongori NCTC 12419]
Length = 702
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRAGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|270261226|ref|ZP_06189499.1| hypothetical protein SOD_a04510 [Serratia odorifera 4Rx13]
gi|421782769|ref|ZP_16219223.1| ribosomal RNA large subunit methyltransferase L [Serratia
plymuthica A30]
gi|270044710|gb|EFA17801.1| hypothetical protein SOD_a04510 [Serratia odorifera 4Rx13]
gi|407755178|gb|EKF65307.1| ribosomal RNA large subunit methyltransferase L [Serratia
plymuthica A30]
Length = 706
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ ++ + A V L ++ LH+R + LK ++A +V+ + PG LD
Sbjct: 136 DIRVNVFLQRDMASVALDLSGEGLHQRGYRDLTGQAPLKESLAAAIVQRSGWQPGTPMLD 195
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+ +E ++
Sbjct: 196 PMCGSGTLLIEAAM 209
>gi|281421145|ref|ZP_06252144.1| putative N6-adenine-specific DNA methylase [Prevotella copri DSM
18205]
gi|281404680|gb|EFB35360.1| putative N6-adenine-specific DNA methylase [Prevotella copri DSM
18205]
Length = 522
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDV-FL 316
DI +N+ I + A + L + SLHRR + + L +A M+ L + G+ F+
Sbjct: 139 DIRLNIHIAEDNATLSLDSSGESLHRRGYRQEQVEAPLNEVLAAGMI-LMTGWKGECDFI 197
Query: 317 DPMCGGGTIPVECSL 331
DPMCG GTI +E +L
Sbjct: 198 DPMCGSGTIAIEAAL 212
>gi|440733699|ref|ZP_20913387.1| 23S rRNA m(2)G2445 methyltransferase [Xanthomonas translucens
DAR61454]
gi|440359339|gb|ELP96652.1| 23S rRNA m(2)G2445 methyltransferase [Xanthomonas translucens
DAR61454]
Length = 726
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYN-MVRLASP- 309
VD++D D+ +NL +R A + + + SLHRR + N LK +A ++R P
Sbjct: 129 VDVEDPDLRLNLSLRKGRATLSVDLGGGSLHRRGWRQVQNAAPLKENLAAAVLLRGQWPQ 188
Query: 310 --IPGDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E +L
Sbjct: 189 LYAQGGGLLDPMCGSGTLLIEGAL 212
>gi|408371916|ref|ZP_11169671.1| rRNA (guanine-N(2)-)-methyltransferase [Galbibacter sp. ck-I2-15]
gi|407742652|gb|EKF54244.1| rRNA (guanine-N(2)-)-methyltransferase [Galbibacter sp. ck-I2-15]
Length = 379
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VDL D+ IN+ I+ NE + L + SLH+R NI + +A ++ L+
Sbjct: 127 VDLKYPDLRINVHIQKNECTISLDSSGQSLHQRGYKTATNIAPINEVLAAGLLLLSGWDG 186
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GTIP+E ++
Sbjct: 187 QSDFMDPMCGSGTIPIEAAM 206
>gi|386825048|ref|ZP_10112175.1| 23S rRNA m(2)G2445 methyltransferase [Serratia plymuthica PRI-2C]
gi|386377905|gb|EIJ18715.1| 23S rRNA m(2)G2445 methyltransferase [Serratia plymuthica PRI-2C]
Length = 706
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ ++ + A V L ++ LH+R + LK ++A +V+ + PG LD
Sbjct: 136 DIRVNVFLQRDMASVALDLSGEGLHQRGYRDLTGQAPLKESLAAAIVQRSGWQPGTPMLD 195
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+ +E ++
Sbjct: 196 PMCGSGTLLIEAAM 209
>gi|374598010|ref|ZP_09671012.1| RNA methylase [Myroides odoratus DSM 2801]
gi|423323654|ref|ZP_17301496.1| hypothetical protein HMPREF9716_00853 [Myroides odoratimimus CIP
103059]
gi|373909480|gb|EHQ41329.1| RNA methylase [Myroides odoratus DSM 2801]
gi|404609270|gb|EKB08663.1| hypothetical protein HMPREF9716_00853 [Myroides odoratimimus CIP
103059]
Length = 386
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD D D+ IN+ I+ + V L + SLH+R NI + +A M+ L+
Sbjct: 132 VDKDFPDLRINVHIQRDLCTVSLDSSGASLHQRGYKTATNIAPINEVLAAGMLLLSGWDG 191
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GT+ +E ++
Sbjct: 192 RSHFMDPMCGSGTLLIEAAM 211
>gi|330013848|ref|ZP_08307805.1| THUMP domain protein, partial [Klebsiella sp. MS 92-3]
gi|328533319|gb|EGF60066.1| THUMP domain protein [Klebsiella sp. MS 92-3]
Length = 279
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A++ L ++ LH R + + +K +A +V + +P
Sbjct: 130 VDRESPDLRINVWLNKETAHISLDLSGEGLHLRGYRDGTGMAPIKENLAAAIVMRSGWVP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|45357712|ref|NP_987269.1| RNA methylase [Methanococcus maripaludis S2]
gi|45047272|emb|CAF29705.1| conserved hypothetical protein [Methanococcus maripaludis S2]
Length = 350
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 20/183 (10%)
Query: 234 SMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSL--------HRR 285
SME ER GG + V L + + + I ++ Y G+ + + + H R
Sbjct: 121 SMEIERKLGGIIKKKTSAQVSLKNPSKTVKVVISNDKMYTGIVIEKRDVEYFQNNRPHLR 180
Query: 286 NIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINE 345
F+ + P +A +V L+ G++ LDP CG G +E + + DI+E
Sbjct: 181 --AYFHPGCIMPKLARCLVNLSRVKEGEIVLDPFCGTGGFLIEA--GFLGCKLIGSDIDE 236
Query: 346 KLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-----CFKPACVDGIVTDLPFGKRVGS 400
++V N+ N+ +L++++ +S + + + K +DGIVTD P+G
Sbjct: 237 QMVNGALLNL--NTYDLSKQV-ISIKENDAKNVSKYLEALKIEKIDGIVTDPPYGISTSK 293
Query: 401 KSN 403
K +
Sbjct: 294 KGD 296
>gi|330752711|emb|CBL88175.1| RNA methylase family UPF0020 [uncultured Leeuwenhoekiella sp.]
Length = 388
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VDL + I++ IR N + L + SLH+R + NI + +A + LA
Sbjct: 133 VDLKFPSLSIDIHIRNNTCNISLDSSGVSLHQRGYRLATNIAPINEVLAAGCLMLAGWKG 192
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GT+ +E ++
Sbjct: 193 HSDFLDPMCGSGTMLIEAAM 212
>gi|226315117|ref|YP_002775013.1| hypothetical protein BBR47_55320 [Brevibacillus brevis NBRC 100599]
gi|226098067|dbj|BAH46509.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 385
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 281 SLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
LH+R E LK T+A M+ L+ P VF+DP CG GTIP+E +L
Sbjct: 159 GLHKRGYRELIGQAPLKETMAAAMIMLSRWKPDRVFMDPFCGSGTIPIEAAL 210
>gi|433678559|ref|ZP_20510406.1| 23S rRNA m(2)G2445 methyltransferase [Xanthomonas translucens pv.
translucens DSM 18974]
gi|430816331|emb|CCP40900.1| 23S rRNA m(2)G2445 methyltransferase [Xanthomonas translucens pv.
translucens DSM 18974]
Length = 726
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYN-MVRLASP- 309
VD++D D+ +NL +R A + + + SLHRR + N LK +A ++R P
Sbjct: 129 VDVEDPDLRLNLSLRKGRATLSVDLGGGSLHRRGWRQVQNAAPLKENLAAAVLLRGQWPQ 188
Query: 310 --IPGDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E +L
Sbjct: 189 LYAQGGGLLDPMCGSGTLLIEGAL 212
>gi|126661917|ref|ZP_01732916.1| putative methylase [Flavobacteria bacterium BAL38]
gi|126625296|gb|EAZ95985.1| putative methylase [Flavobacteria bacterium BAL38]
Length = 387
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+D D D+ I++ I + V L + SLH R NI + +A M+ LA
Sbjct: 132 IDKDFPDLQIHVHIDRDNVTVSLDSSGASLHHRGYRTATNIAPINEVLAAGMLILAGWEG 191
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GTI E ++
Sbjct: 192 KSHFLDPMCGSGTILAEAAM 211
>gi|421916453|ref|ZP_16346029.1| 23S rRNA (guanine-N-2-)-methyltransferase rlmL [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|410121246|emb|CCM88654.1| 23S rRNA (guanine-N-2-)-methyltransferase rlmL [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
Length = 253
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A++ L ++ LH R + + +K +A +V + +P
Sbjct: 130 VDRESPDLRINVWLNKETAHISLDLSGEGLHLRGYRDGTGMAPIKENLAAAIVMRSGWVP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|113474147|ref|YP_720208.1| putative RNA methylase [Trichodesmium erythraeum IMS101]
gi|110165195|gb|ABG49735.1| putative RNA methylase [Trichodesmium erythraeum IMS101]
Length = 374
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+D + +I IN I +N + L + +SLH+R + LK T+A ++ +A P
Sbjct: 130 IDTKNPEILINGHIEHNNCILSLDSSGSSLHQRGYRLAMGFAPLKETLAAALLEMAEYSP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDP+CG GT+P+E SL
Sbjct: 190 ELPFLDPLCGSGTLPLEASL 209
>gi|435849204|ref|YP_007311454.1| putative DNA modification methylase [Natronococcus occultus SP4]
gi|433675472|gb|AGB39664.1| putative DNA modification methylase [Natronococcus occultus SP4]
Length = 358
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 20/163 (12%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F ++ P +A ++ +A G LDPMCG G + VE L V D EK+ +
Sbjct: 182 FQPGSMDPLLARSVANVAGARLGATVLDPMCGTGGVLVEAGLVGAD--VVGTDAQEKMAV 239
Query: 350 KTQANVLHNSGNLNRELKVSPLVC----------NVRQLCFKPACVDGIVTDLPFGKRVG 399
T+ N+ H L+R+ SP + +L F VDG+V D P+G++
Sbjct: 240 GTRRNLEH---FLDRD-DPSPTGVSRGSWHVGRGDATRLPFADDAVDGVVFDAPYGRQ-- 293
Query: 400 SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHI 442
SK + L L + + R RA+++ +DR +A +
Sbjct: 294 SKVDTHRLEDLVSGALAE-ARRVASRAVVV-ADRSWAAEAREV 334
>gi|332878264|ref|ZP_08445990.1| THUMP domain protein [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332683715|gb|EGJ56586.1| THUMP domain protein [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 387
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD+ D+ I++ ++ NE V L + SLH+R N+ + +A ++ L+
Sbjct: 133 VDVQHPDVAIHIHVQRNEVIVSLDSSGESLHQRGYRTATNLAPINEVLAAGILLLSGWEG 192
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GT +E ++
Sbjct: 193 QSDFLDPMCGSGTFLIEAAM 212
>gi|421731286|ref|ZP_16170412.1| hypothetical protein WYY_09354 [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|407075440|gb|EKE48427.1| hypothetical protein WYY_09354 [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 371
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 224 CNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSL 282
C R+ K + E + GK N+ W+ + +Y ++I+L ++A + L + T L
Sbjct: 98 CQRIVKKAIA--EKLKLQSGKQNE---WIEETGPEYKVEISL--LKDKAVLTLDSSGTGL 150
Query: 283 HRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
H+R V+ +K T+A ++ L + P F+DP CG GTI +E +L
Sbjct: 151 HKRGYRVDQGGAPIKETLAAALILLTNWTPDRPFVDPFCGSGTIAIEAAL 200
>gi|451346599|ref|YP_007445230.1| hypothetical protein KSO_009260 [Bacillus amyloliquefaciens IT-45]
gi|449850357|gb|AGF27349.1| hypothetical protein KSO_009260 [Bacillus amyloliquefaciens IT-45]
Length = 382
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 9/158 (5%)
Query: 176 QVNNVQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSM 235
QV Q + D ++ K ID + + +++L C R+ K +
Sbjct: 61 QVAEFQAKTFDELFEKTKAIDWRAYIPENAKFPVIGKSVKSVLASVPDCQRIVKKAIA-- 118
Query: 236 ESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNIT 293
E + GK N+ W+ + +Y ++I+L ++A + L + T LH+R V+
Sbjct: 119 EKLKLQSGKQNE---WIEETGPEYKVEISL--LKDKAVLTLDSSGTGLHKRGYRVDQGGA 173
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
+K T+A ++ L + P F+DP CG GTI +E +L
Sbjct: 174 PIKETLAAALILLTNWTPDRPFVDPFCGSGTIAIEAAL 211
>gi|293396737|ref|ZP_06641013.1| N6-adenine-specific DNA methytransferase [Serratia odorifera DSM
4582]
gi|291421001|gb|EFE94254.1| N6-adenine-specific DNA methytransferase [Serratia odorifera DSM
4582]
Length = 718
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLD 317
DI IN+ ++ + A V L ++ LH+R + LK +A +V+ + PG LD
Sbjct: 148 DIRINVFLQRDMASVALDLSGEGLHQRGYRDLTGQAPLKENLAAAIVQRSGWQPGTPMLD 207
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+ +E ++
Sbjct: 208 PMCGSGTLLIEAAM 221
>gi|438025065|ref|ZP_20855087.1| 23S rRNA m(2)G2445 methyltransferase, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-5646]
gi|435330809|gb|ELP02052.1| 23S rRNA m(2)G2445 methyltransferase, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-5646]
Length = 585
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 13 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 72
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 73 GTPLLDPMCGSGTLLIEAAM 92
>gi|261878658|ref|ZP_06005085.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
gi|270334662|gb|EFA45448.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
Length = 514
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 50/205 (24%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDV-FL 316
DI +++ I ++A + L + SLHRR + ++ L +A MV L + GD +
Sbjct: 137 DIRLHIHIANDDATLCLDSSGESLHRRGYRQESVEAPLNEILAAGMV-LMTGWKGDTDLI 195
Query: 317 DPMCGGGTIPVECSL----------SYPHTFFVCGDINEKLVLKTQANVLHNSGNLNREL 366
DPMCG GT+ +E +L + F D ++ L + ++N + RE
Sbjct: 196 DPMCGSGTLAIEAALIARNISPGVFRKEYAFEKWPDFDQDLF-----DTIYNDDSQEREF 250
Query: 367 K------------VSPLVCNVRQLCF---------------KPACVDGIVTDLPFGKRVG 399
K V+ NVR KPA I+T+ P+G+R+
Sbjct: 251 KHHIYGYDIDMKAVNTARHNVRAAGLTNDITIEQQDFKDFTKPANKSIIITNPPYGERI- 309
Query: 400 SKSNNFLLYRLFLIEIGKIVRPQIG 424
S N YR+ IG+ ++ + G
Sbjct: 310 STPNLLGTYRM----IGERLKHEFG 330
>gi|161503860|ref|YP_001570972.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|229560170|sp|A9MHU0.1|RLMKL_SALAR RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|160865207|gb|ABX21830.1| hypothetical protein SARI_01948 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 702
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRAGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|421578555|ref|ZP_16024129.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|445185917|ref|ZP_21399052.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|402524068|gb|EJW31373.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|444869869|gb|ELX94430.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
Length = 610
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 38 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 97
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 98 GTPLLDPMCGSGTLLIEAAM 117
>gi|62179584|ref|YP_216001.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|224584432|ref|YP_002638230.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|375113906|ref|ZP_09759076.1| Ribosomal RNA large subunit methyltransferase L [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SCSA50]
gi|81309723|sp|Q57QU1.1|RLMKL_SALCH RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|62127217|gb|AAX64920.1| putative N6-adenine-specific DNA methylase [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|224468959|gb|ACN46789.1| hypothetical protein SPC_2688 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|322714052|gb|EFZ05623.1| Ribosomal RNA large subunit methyltransferase L [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SCSA50]
Length = 702
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|408381812|ref|ZP_11179360.1| hypothetical protein A994_05135 [Methanobacterium formicicum DSM
3637]
gi|407815743|gb|EKF86313.1| hypothetical protein A994_05135 [Methanobacterium formicicum DSM
3637]
Length = 343
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 24/154 (15%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTS--------LHRRNIVEFNITTLKPTIAYNMV 304
V+L+D I I ++ + VG + + S H+R F ++ P +A MV
Sbjct: 129 VNLEDPSIFIRTILKDGKVIVGQRIGKISKKHFFNLKPHKRPF--FYPGSMSPKLARCMV 186
Query: 305 RLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH---NSGN 361
L G LDP CG G I +E + + DI+ K+V T+ N+ H +
Sbjct: 187 NLTRIKKGQTLLDPFCGTGGILIEAGIVGARV--IGTDIDYKMVKGTKENLEHCGISDYE 244
Query: 362 LNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFG 395
+ RE + R+L P+ VD IVTD P+G
Sbjct: 245 VFRE--------DARKLEL-PSKVDAIVTDPPYG 269
>gi|437443523|ref|ZP_20758018.1| 23S rRNA m(2)G2445 methyltransferase, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 40-18]
gi|435210908|gb|ELN94132.1| 23S rRNA m(2)G2445 methyltransferase, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 40-18]
Length = 618
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 46 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 105
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 106 GTPLLDPMCGSGTLLIEAAM 125
>gi|378955665|ref|YP_005213152.1| hypothetical protein SPUL_1994 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|438139878|ref|ZP_20874879.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|357206276|gb|AET54322.1| hypothetical protein SPUL_1994 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|434939984|gb|ELL46699.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
Length = 702
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|290976466|ref|XP_002670961.1| predicted protein [Naegleria gruberi]
gi|284084525|gb|EFC38217.1| predicted protein [Naegleria gruberi]
Length = 563
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 111/265 (41%), Gaps = 72/265 (27%)
Query: 220 FRVTCNR----VGKHTVTSMESERAFGGKLNDTYF--WLVDLDDYDIDINLQIRYNEAYV 273
FR T R + KH SM+ +G + +T V+L YD+DI + + + ++
Sbjct: 248 FRATGVRKQTSILKHDYKSMDMAAEYGYGIGETICKDMKVNLKKYDLDILIYLDIDRVFI 307
Query: 274 G------------LPVTQTSLHRRNI---------------------------VEFNITT 294
G L + SL+ + I + + +T
Sbjct: 308 GMLLSPPLHALEELKIRHFSLNNQVIDSNLSEDELNVLNSCDLIYSYTKQDIRLTYGKST 367
Query: 295 LKPTIAYNMVR---LASPIPGD---------VFLDPMCGGGTIPVECSLSYPHTFFVCGD 342
LKP +Y + + + + I D F+DP G GT+ + SL+Y T D
Sbjct: 368 LKPQTSYMLWKTLLMENSILRDKLFQQSQLVTFVDPFAGSGTLSL--SLNYLFT-----D 420
Query: 343 INEKLVLKT------QANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK 396
+ K+ L + + + ++ + NR + + L C+ R L F+ +D +++D+PFG
Sbjct: 421 NDPKVQLYNIDFNLDEVSAMKDNCSKNRNIHI--LNCDSRFLPFRNESIDVVISDMPFGV 478
Query: 397 RVGSKSNNFLLYRLFLIEIGKIVRP 421
G+ S N +Y + ++ +IV+P
Sbjct: 479 LCGNHSRNSKVYPKIVKQLERIVKP 503
>gi|378444499|ref|YP_005232131.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|261246278|emb|CBG24086.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
Length = 702
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|16764420|ref|NP_460035.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|56413942|ref|YP_151017.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|167993433|ref|ZP_02574527.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168243849|ref|ZP_02668781.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168264749|ref|ZP_02686722.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168467500|ref|ZP_02701337.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168821988|ref|ZP_02833988.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194444574|ref|YP_002040264.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194451155|ref|YP_002045063.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|197248600|ref|YP_002145931.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197264036|ref|ZP_03164110.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197362865|ref|YP_002142502.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198242133|ref|YP_002214994.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|207856406|ref|YP_002243057.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|374980058|ref|ZP_09721388.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|378449434|ref|YP_005236793.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378698957|ref|YP_005180914.1| hypothetical protein SL1344_1001 [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|378983624|ref|YP_005246779.1| 23S rRNA methyltransferase L [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378988408|ref|YP_005251572.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|379700230|ref|YP_005241958.1| Ribosomal RNA large subunit methyltransferase L [Salmonella
enterica subsp. enterica serovar Typhimurium str.
ST4/74]
gi|383495793|ref|YP_005396482.1| hypothetical protein UMN798_1101 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|386590932|ref|YP_006087332.1| 2-phospho-D-glycerate hydrolyase [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|409249447|ref|YP_006885273.1| UPF0020/UPF0064 protein ycbY [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|417325452|ref|ZP_12111411.1| 23S rRNA-methyltransferase RlmL [Salmonella enterica subsp.
enterica serovar Adelaide str. A4-669]
gi|417340570|ref|ZP_12121854.1| 23S rRNA-methyltransferase RlmL [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
gi|417509908|ref|ZP_12174949.1| 23S rRNA-methyltransferase RlmL [Salmonella enterica subsp.
enterica serovar Senftenberg str. A4-543]
gi|418761688|ref|ZP_13317828.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|418766430|ref|ZP_13322505.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|418770889|ref|ZP_13326909.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|418776281|ref|ZP_13332228.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|418779205|ref|ZP_13335109.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|418786521|ref|ZP_13342335.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|418789661|ref|ZP_13345447.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|418794508|ref|ZP_13350228.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|418798254|ref|ZP_13353931.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|418802613|ref|ZP_13358240.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|418808547|ref|ZP_13364100.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|418812703|ref|ZP_13368224.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|418817216|ref|ZP_13372704.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|418820659|ref|ZP_13376092.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|418833112|ref|ZP_13388044.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|418836099|ref|ZP_13390986.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|418839089|ref|ZP_13393929.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|418846248|ref|ZP_13401020.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|418848353|ref|ZP_13403092.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|418852456|ref|ZP_13407156.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|418858297|ref|ZP_13412914.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|418863789|ref|ZP_13418326.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|419728124|ref|ZP_14255091.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|419736222|ref|ZP_14263073.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|419738238|ref|ZP_14265004.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|419746152|ref|ZP_14272751.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|419750854|ref|ZP_14277300.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|419788531|ref|ZP_14314216.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|419791145|ref|ZP_14316799.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|421358442|ref|ZP_15808739.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421362412|ref|ZP_15812664.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|421367612|ref|ZP_15817805.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|421374006|ref|ZP_15824141.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|421378208|ref|ZP_15828297.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421382815|ref|ZP_15832861.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|421387456|ref|ZP_15837455.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421391560|ref|ZP_15841526.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421395236|ref|ZP_15845175.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421401502|ref|ZP_15851378.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421402897|ref|ZP_15852751.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|421410263|ref|ZP_15860044.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421412530|ref|ZP_15862284.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|421416522|ref|ZP_15866241.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421421515|ref|ZP_15871183.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421425308|ref|ZP_15874944.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421432179|ref|ZP_15881756.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421438974|ref|ZP_15888468.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|421446533|ref|ZP_15895945.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|421446974|ref|ZP_15896382.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|421569353|ref|ZP_16015056.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|421576091|ref|ZP_16021695.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|421585932|ref|ZP_16031421.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|422025202|ref|ZP_16371642.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|422030206|ref|ZP_16376416.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|427548399|ref|ZP_18926954.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|427564312|ref|ZP_18931657.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|427583892|ref|ZP_18936454.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|427606188|ref|ZP_18941267.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|427631374|ref|ZP_18946215.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|427654593|ref|ZP_18950972.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|427660379|ref|ZP_18955877.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|427665604|ref|ZP_18960648.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|427748294|ref|ZP_18965719.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
gi|436601371|ref|ZP_20513042.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|436763044|ref|ZP_20520574.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|436800152|ref|ZP_20524313.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|436811603|ref|ZP_20530483.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436815974|ref|ZP_20533525.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436839122|ref|ZP_20537442.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436851569|ref|ZP_20542168.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436858331|ref|ZP_20546851.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436865507|ref|ZP_20551474.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436875318|ref|ZP_20557225.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436883556|ref|ZP_20561985.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436887583|ref|ZP_20563912.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436896627|ref|ZP_20569383.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436906605|ref|ZP_20575451.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436911444|ref|ZP_20577273.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436920918|ref|ZP_20583389.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436930696|ref|ZP_20588921.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436935396|ref|ZP_20590836.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436942585|ref|ZP_20595531.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436951920|ref|ZP_20600975.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436964369|ref|ZP_20606005.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436974401|ref|ZP_20611070.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436986592|ref|ZP_20615482.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436990261|ref|ZP_20616828.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437012475|ref|ZP_20624988.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437020552|ref|ZP_20627363.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437032070|ref|ZP_20631714.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437044915|ref|ZP_20637462.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437052629|ref|ZP_20642052.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437057915|ref|ZP_20644762.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437065670|ref|ZP_20649261.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437075608|ref|ZP_20653971.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437086827|ref|ZP_20660836.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437088188|ref|ZP_20661530.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437113440|ref|ZP_20668760.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437126175|ref|ZP_20674444.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|437134329|ref|ZP_20678753.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|437141129|ref|ZP_20682973.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437142852|ref|ZP_20683891.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437155577|ref|ZP_20691796.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|437159959|ref|ZP_20694348.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|437171507|ref|ZP_20700611.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437177520|ref|ZP_20704000.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|437185780|ref|ZP_20709179.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437242484|ref|ZP_20714525.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|437260973|ref|ZP_20718043.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437269017|ref|ZP_20722302.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437281802|ref|ZP_20728803.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437294257|ref|ZP_20732252.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|437307802|ref|ZP_20735007.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437321442|ref|ZP_20738670.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|437344220|ref|ZP_20746234.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|437403968|ref|ZP_20751927.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|437461524|ref|ZP_20762444.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|437478706|ref|ZP_20767719.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437487741|ref|ZP_20770057.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437506527|ref|ZP_20775810.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|437563713|ref|ZP_20786859.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|437575397|ref|ZP_20790193.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|437607728|ref|ZP_20800506.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|437613447|ref|ZP_20801525.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|437645248|ref|ZP_20808826.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|437658993|ref|ZP_20811920.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|437682489|ref|ZP_20818607.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|437698503|ref|ZP_20823199.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437703836|ref|ZP_20824642.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|437736153|ref|ZP_20832561.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|437895067|ref|ZP_20849511.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 6.0562-1]
gi|438084590|ref|ZP_20858358.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|438104076|ref|ZP_20865780.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438112635|ref|ZP_20869232.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|440764480|ref|ZP_20943508.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|440769372|ref|ZP_20948330.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|440770847|ref|ZP_20949775.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|445141536|ref|ZP_21385477.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|445166102|ref|ZP_21394158.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|445226911|ref|ZP_21404080.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|445255592|ref|ZP_21409324.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|445334110|ref|ZP_21415088.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|445349004|ref|ZP_21419783.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|445365143|ref|ZP_21425133.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|81821429|sp|Q5PGE3.1|RLMKL_SALPA RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|81853742|sp|Q8ZQ73.1|RLMKL_SALTY RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|238689924|sp|B5BBL9.1|RLMKL_SALPK RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|238690029|sp|B5F1U5.1|RLMKL_SALA4 RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|238690358|sp|B5FQZ1.1|RLMKL_SALDC RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|238690430|sp|B5QZF1.1|RLMKL_SALEP RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|238690621|sp|B4TDY8.1|RLMKL_SALHS RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|238693591|sp|B4T1Z1.1|RLMKL_SALNS RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|16419576|gb|AAL19994.1| putative N6-adenine-specific DNA methylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|56128199|gb|AAV77705.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|194403237|gb|ACF63459.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194409459|gb|ACF69678.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|195630073|gb|EDX48725.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197094342|emb|CAR59854.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197212303|gb|ACH49700.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197242291|gb|EDY24911.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197936649|gb|ACH73982.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|205328551|gb|EDZ15315.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205337189|gb|EDZ23953.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205341529|gb|EDZ28293.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205346845|gb|EDZ33476.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206708209|emb|CAR32509.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|267992812|gb|ACY87697.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301157605|emb|CBW17097.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312912052|dbj|BAJ36026.1| 23S rRNA methyltransferase L [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|320085275|emb|CBY95059.1| UPF0020/UPF0064 protein ycbY [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|321223678|gb|EFX48741.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323129329|gb|ADX16759.1| Ribosomal RNA large subunit methyltransferase L [Salmonella
enterica subsp. enterica serovar Typhimurium str.
ST4/74]
gi|332987955|gb|AEF06938.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|353575994|gb|EHC38588.1| 23S rRNA-methyltransferase RlmL [Salmonella enterica subsp.
enterica serovar Adelaide str. A4-669]
gi|353647813|gb|EHC90852.1| 23S rRNA-methyltransferase RlmL [Salmonella enterica subsp.
enterica serovar Senftenberg str. A4-543]
gi|357958951|gb|EHJ83377.1| 23S rRNA-methyltransferase RlmL [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
gi|380462614|gb|AFD58017.1| hypothetical protein UMN798_1101 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|381292361|gb|EIC33564.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|381300274|gb|EIC41337.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|381302743|gb|EIC43774.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|381304049|gb|EIC45059.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|381305854|gb|EIC46763.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|383797976|gb|AFH45058.1| 23S rRNA (guanine-N-2-) -methyltransferase rlmL [Salmonella
enterica subsp. enterica serovar Heidelberg str. B182]
gi|392616997|gb|EIW99423.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|392621116|gb|EIX03481.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|392736260|gb|EIZ93425.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|392737664|gb|EIZ94817.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|392739424|gb|EIZ96558.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|392746353|gb|EJA03367.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|392747628|gb|EJA04622.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|392753672|gb|EJA10598.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|392760006|gb|EJA16846.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|392761345|gb|EJA18167.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|392766911|gb|EJA23683.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|392773929|gb|EJA30624.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|392775230|gb|EJA31922.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|392777626|gb|EJA34309.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|392789384|gb|EJA45904.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|392792928|gb|EJA49382.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|392796110|gb|EJA52454.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|392801925|gb|EJA58145.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|392810534|gb|EJA66547.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|392813417|gb|EJA69382.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|392823665|gb|EJA79461.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|392829279|gb|EJA84958.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|392832262|gb|EJA87884.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|392833653|gb|EJA89266.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|395986132|gb|EJH95296.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|395986882|gb|EJH96045.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|395990236|gb|EJH99367.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|395994858|gb|EJI03924.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|395997513|gb|EJI06554.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|395997923|gb|EJI06963.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|396008281|gb|EJI17215.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396010523|gb|EJI19435.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396013973|gb|EJI22860.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396021567|gb|EJI30393.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396022396|gb|EJI31209.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396029928|gb|EJI38663.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|396039618|gb|EJI48242.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|396040830|gb|EJI49453.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396044699|gb|EJI53294.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396051430|gb|EJI59948.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396057778|gb|EJI66248.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396062115|gb|EJI70528.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|396072202|gb|EJI80517.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|396075498|gb|EJI83767.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|402519547|gb|EJW26908.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|402527195|gb|EJW34458.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|402529340|gb|EJW36578.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|414021270|gb|EKT04825.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|414021355|gb|EKT04908.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|414022738|gb|EKT06208.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|414035176|gb|EKT18067.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|414036514|gb|EKT19338.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|414039830|gb|EKT22485.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|414049406|gb|EKT31618.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|414051014|gb|EKT33158.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|414055567|gb|EKT37459.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|414060849|gb|EKT42339.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|414066464|gb|EKT47025.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
gi|434959221|gb|ELL52711.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|434964234|gb|ELL57256.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434965416|gb|ELL58371.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|434974090|gb|ELL66478.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434974822|gb|ELL67143.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434980430|gb|ELL72351.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434986871|gb|ELL78522.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434990483|gb|ELL82033.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434994909|gb|ELL86226.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|434996542|gb|ELL87858.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|435002001|gb|ELL93090.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435009293|gb|ELM00079.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435015182|gb|ELM05739.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435016516|gb|ELM07042.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435025689|gb|ELM15820.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435027040|gb|ELM17169.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435032351|gb|ELM22295.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435038234|gb|ELM28015.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435042784|gb|ELM32501.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435048226|gb|ELM37791.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435052387|gb|ELM41889.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435052916|gb|ELM42390.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435061354|gb|ELM50582.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435063795|gb|ELM52943.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435070418|gb|ELM59402.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435079180|gb|ELM67891.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435080006|gb|ELM68699.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435080734|gb|ELM69402.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435091229|gb|ELM79630.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435093728|gb|ELM82067.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435099345|gb|ELM87553.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435102973|gb|ELM91076.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435104905|gb|ELM92942.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435116404|gb|ELN04142.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435116819|gb|ELN04534.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435117256|gb|ELN04968.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|435119808|gb|ELN07410.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|435128833|gb|ELN16159.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435138445|gb|ELN25472.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435141754|gb|ELN28685.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435146029|gb|ELN32823.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435148189|gb|ELN34917.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|435155200|gb|ELN41758.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435159165|gb|ELN45523.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435163429|gb|ELN49565.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435168420|gb|ELN54252.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435172667|gb|ELN58194.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435177737|gb|ELN63019.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|435179858|gb|ELN64985.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|435186316|gb|ELN71158.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435191274|gb|ELN75841.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|435196632|gb|ELN80963.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|435205667|gb|ELN89249.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|435219947|gb|ELO02265.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|435221525|gb|ELO03798.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435232439|gb|ELO13540.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435234718|gb|ELO15572.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435236724|gb|ELO17444.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|435245362|gb|ELO25449.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|435253816|gb|ELO33240.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|435264382|gb|ELO43299.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|435269746|gb|ELO48263.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|435270045|gb|ELO48549.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|435272827|gb|ELO51206.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|435275205|gb|ELO53289.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435285573|gb|ELO62959.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|435293214|gb|ELO69922.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435319606|gb|ELO92415.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|435322457|gb|ELO94730.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|435324034|gb|ELO96005.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 6.0562-1]
gi|435330713|gb|ELP01979.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|436414460|gb|ELP12388.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|436416630|gb|ELP14535.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|436423419|gb|ELP21230.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|444850567|gb|ELX75665.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|444866438|gb|ELX91167.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|444867320|gb|ELX92012.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|444875282|gb|ELX99492.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|444875502|gb|ELX99699.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|444882956|gb|ELY06870.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|444889159|gb|ELY12631.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
Length = 702
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|418868868|ref|ZP_13423309.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|392837558|gb|EJA93128.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
Length = 702
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|423139439|ref|ZP_17127077.1| THUMP domain protein [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
gi|379051993|gb|EHY69884.1| THUMP domain protein [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
Length = 702
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDMRINVWLNKETASIALDLSGDGLHLRGYRDRAGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|377557241|ref|ZP_09786897.1| N6-adenine-specific DNA methylase [Lactobacillus gastricus PS3]
gi|376166113|gb|EHS85034.1| N6-adenine-specific DNA methylase [Lactobacillus gastricus PS3]
Length = 378
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 88/213 (41%), Gaps = 52/213 (24%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I + I + + L T SL +R + +K +A +V LA P + F+DP+C
Sbjct: 141 IEVAIDKDHVILTLDTTGDSLFKRGYRQAKGAAPMKENLAAALVMLAHWFPDNPFVDPVC 200
Query: 321 GGGTIPVECSL--------------------------------------SYPHTFFVCG- 341
G GTIP+E +L Y + G
Sbjct: 201 GSGTIPIEAALIGHNIAPGINRHFMMEQWLNLTPAELLDEVRDEADAQAHYDVELDITGY 260
Query: 342 DINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG-IVTDLPFGKRVGS 400
DI++ +V Q N + L++++ L ++ ++G IV + P+G+R+
Sbjct: 261 DIDQSMVAIAQQNA--RAAGLSQDITFKQLALK----DWRTEKLNGVIVANPPYGERLSD 314
Query: 401 KSNNFLLYRLFLIEIGKIVRPQIGRA-ILLTSD 432
++N LYR ++G++ RP + +LT+D
Sbjct: 315 QANVRELYR----QMGQLYRPMTTWSKYILTAD 343
>gi|417357010|ref|ZP_12132381.1| 23S rRNA-methyltransferase RlmL [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
gi|353594651|gb|EHC52101.1| 23S rRNA-methyltransferase RlmL [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
Length = 702
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|205352216|ref|YP_002226017.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|375123011|ref|ZP_09768175.1| Ribosomal RNA large subunit methyltransferase L [Salmonella
enterica subsp. enterica serovar Gallinarum str. SG9]
gi|445129827|ref|ZP_21380982.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|238690475|sp|B5R6B4.1|RLMKL_SALG2 RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|205271997|emb|CAR36841.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|326627261|gb|EGE33604.1| Ribosomal RNA large subunit methyltransferase L [Salmonella
enterica subsp. enterica serovar Gallinarum str. SG9]
gi|444852611|gb|ELX77687.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
Length = 702
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|168237113|ref|ZP_02662171.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|194737689|ref|YP_002114061.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|375000720|ref|ZP_09725060.1| THUMP domain protein [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|416505401|ref|ZP_11733835.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|416523317|ref|ZP_11740994.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|416527716|ref|ZP_11743491.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|416535405|ref|ZP_11747659.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|416554923|ref|ZP_11758496.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|416564426|ref|ZP_11763309.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|416572011|ref|ZP_11767094.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|417348147|ref|ZP_12127172.1| 23S rRNA (guanine-N-2-) -methyltransferase rlmL [Salmonella
enterica subsp. enterica serovar Gaminara str. A4-567]
gi|417389854|ref|ZP_12153518.1| 23S rRNA-methyltransferase RlmL [Salmonella enterica subsp.
enterica serovar Minnesota str. A4-603]
gi|417456345|ref|ZP_12163638.1| 23S rRNA-methyltransferase RlmL [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
gi|418514374|ref|ZP_13080580.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|421887134|ref|ZP_16318297.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|238693667|sp|B4TRX1.1|RLMKL_SALSV RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|194713191|gb|ACF92412.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197289800|gb|EDY29161.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|353075408|gb|EHB41168.1| THUMP domain protein [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|353576387|gb|EHC38847.1| 23S rRNA (guanine-N-2-) -methyltransferase rlmL [Salmonella
enterica subsp. enterica serovar Gaminara str. A4-567]
gi|353620568|gb|EHC70639.1| 23S rRNA-methyltransferase RlmL [Salmonella enterica subsp.
enterica serovar Minnesota str. A4-603]
gi|353634376|gb|EHC80958.1| 23S rRNA-methyltransferase RlmL [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
gi|363550053|gb|EHL34382.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363555563|gb|EHL39789.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|363556335|gb|EHL40550.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|363560531|gb|EHL44674.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|363565613|gb|EHL49637.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|363570865|gb|EHL54786.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|363573567|gb|EHL57446.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|366079141|gb|EHN43129.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|379983339|emb|CCF90570.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
Length = 702
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|213646710|ref|ZP_03376763.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
Length = 702
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|204929971|ref|ZP_03220992.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|452120831|ref|YP_007471079.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|204320965|gb|EDZ06166.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|451909835|gb|AGF81641.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
Length = 702
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|161614745|ref|YP_001588710.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|238687234|sp|A9N6Y0.1|RLMKL_SALPB RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|161364109|gb|ABX67877.1| hypothetical protein SPAB_02497 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 702
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|372276245|ref|ZP_09512281.1| 23S rRNA m(2)G2445 methyltransferase [Pantoea sp. SL1_M5]
Length = 704
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD + DI +N+ + + A + L ++ +SLH+R + LK ++A +V + P
Sbjct: 130 VDREQADIRVNVWLNDDRASIALDLSGSSLHQRGYRQQTGQAPLKESLAAAIVLRSGWEP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
+DPMCG GT+ +E +L
Sbjct: 190 TTPLIDPMCGSGTLLIEAAL 209
>gi|416422009|ref|ZP_11689913.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|416431526|ref|ZP_11695680.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|416441494|ref|ZP_11701706.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|416443782|ref|ZP_11703258.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|416452608|ref|ZP_11709103.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|416459200|ref|ZP_11713709.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|416467526|ref|ZP_11717438.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|416477618|ref|ZP_11721503.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|416490867|ref|ZP_11726826.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|416500306|ref|ZP_11731377.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|416545664|ref|ZP_11753458.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|416578354|ref|ZP_11770474.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|416582292|ref|ZP_11772566.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|416593603|ref|ZP_11780009.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|416599330|ref|ZP_11783564.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|416604831|ref|ZP_11786452.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|416612480|ref|ZP_11791505.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|416619759|ref|ZP_11795326.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|416628303|ref|ZP_11799516.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|416641233|ref|ZP_11805380.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|416650233|ref|ZP_11810341.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|416666168|ref|ZP_11817319.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|416676863|ref|ZP_11822075.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|416693128|ref|ZP_11826589.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|416707413|ref|ZP_11832511.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|416714711|ref|ZP_11838029.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|416716489|ref|ZP_11838836.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|416725394|ref|ZP_11845764.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|416728259|ref|ZP_11847532.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|416738761|ref|ZP_11853519.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|416743170|ref|ZP_11856064.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|416759227|ref|ZP_11864112.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|416760965|ref|ZP_11865173.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|416770573|ref|ZP_11871912.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|418484333|ref|ZP_13053332.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|418495251|ref|ZP_13061693.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|418500165|ref|ZP_13066564.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|418501987|ref|ZP_13068363.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|418509804|ref|ZP_13076096.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|418526842|ref|ZP_13092801.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|322616436|gb|EFY13345.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322619686|gb|EFY16561.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622618|gb|EFY19463.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322629767|gb|EFY26542.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632511|gb|EFY29257.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322636994|gb|EFY33697.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641467|gb|EFY38105.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322646067|gb|EFY42583.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322649631|gb|EFY46062.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322654068|gb|EFY50391.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322658600|gb|EFY54862.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322663457|gb|EFY59659.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322670193|gb|EFY66333.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322671429|gb|EFY67551.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322676785|gb|EFY72852.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322682709|gb|EFY78728.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686389|gb|EFY82371.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323195118|gb|EFZ80300.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323199800|gb|EFZ84889.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323202793|gb|EFZ87829.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323217976|gb|EGA02691.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323222008|gb|EGA06395.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226581|gb|EGA10786.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229777|gb|EGA13900.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323233002|gb|EGA17098.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240737|gb|EGA24779.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323243053|gb|EGA27074.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323249784|gb|EGA33686.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323252744|gb|EGA36582.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323259157|gb|EGA42801.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323259980|gb|EGA43608.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323268019|gb|EGA51498.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323269867|gb|EGA53316.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|366058913|gb|EHN23192.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|366059107|gb|EHN23381.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|366069632|gb|EHN33755.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|366076434|gb|EHN40472.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|366077899|gb|EHN41908.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|366828416|gb|EHN55303.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|372205093|gb|EHP18618.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
Length = 702
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|417474103|ref|ZP_12169306.1| 23S rRNA-methyltransferase RlmL [Salmonella enterica subsp.
enterica serovar Rubislaw str. A4-653]
gi|353648707|gb|EHC91537.1| 23S rRNA-methyltransferase RlmL [Salmonella enterica subsp.
enterica serovar Rubislaw str. A4-653]
Length = 702
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|345514131|ref|ZP_08793645.1| hypothetical protein BSEG_02164 [Bacteroides dorei 5_1_36/D4]
gi|229435946|gb|EEO46023.1| hypothetical protein BSEG_02164 [Bacteroides dorei 5_1_36/D4]
Length = 482
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
V ++ D+ +N+ I N+ + L + SLHRR + + L +A M+ L +
Sbjct: 133 VRINHPDVALNIHIAENKCTLSLDSSGESLHRRGYRQEAVEAPLNEVLAAGMI-LMTGWK 191
Query: 312 GDV-FLDPMCGGGTIPVECSL 331
G+ +DPMCG GTIP+E +L
Sbjct: 192 GECDLIDPMCGSGTIPIEAAL 212
>gi|200389518|ref|ZP_03216129.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|199601963|gb|EDZ00509.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
Length = 702
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|159902600|ref|YP_001549944.1| RNA methylase [Prochlorococcus marinus str. MIT 9211]
gi|159887776|gb|ABX07990.1| Putative RNA methylase family UPF0020 [Prochlorococcus marinus str.
MIT 9211]
Length = 374
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 238 ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLK 296
+R+ GK +D + + D DI I+L + N+A + L + SLHRR + LK
Sbjct: 120 QRSSCGKRSD-----ISVQDPDICIHLHLHNNQAVLSLDSSAHSLHRRGFRPAMGVAPLK 174
Query: 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVE 328
+A ++RL + +DP+CG GT +E
Sbjct: 175 ENLAAGLLRLTNWDFSMPLVDPLCGSGTFLIE 206
>gi|429729136|ref|ZP_19263823.1| THUMP domain protein [Peptostreptococcus anaerobius VPI 4330]
gi|429146072|gb|EKX89138.1| THUMP domain protein [Peptostreptococcus anaerobius VPI 4330]
Length = 368
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 273 VGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
+ + + SL++R E N ++ T+A +VRL PG + +DPMCG GTI +E ++
Sbjct: 140 LSIDTSGVSLYKRGYKELANKAPIRETLAAGLVRLTPWRPGRILVDPMCGSGTILIEAAM 199
>gi|417414571|ref|ZP_12158454.1| 23S rRNA-methyltransferase RlmL [Salmonella enterica subsp.
enterica serovar Mississippi str. A4-633]
gi|353625370|gb|EHC74197.1| 23S rRNA-methyltransferase RlmL [Salmonella enterica subsp.
enterica serovar Mississippi str. A4-633]
Length = 702
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|375118480|ref|ZP_09763647.1| Ribosomal RNA large subunit methyltransferase L [Salmonella
enterica subsp. enterica serovar Dublin str. SD3246]
gi|326622747|gb|EGE29092.1| Ribosomal RNA large subunit methyltransferase L [Salmonella
enterica subsp. enterica serovar Dublin str. SD3246]
Length = 702
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|437367487|ref|ZP_20748890.1| 23S rRNA m(2)G2445 methyltransferase, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 22558]
gi|435207810|gb|ELN91243.1| 23S rRNA m(2)G2445 methyltransferase, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 22558]
Length = 673
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|163788874|ref|ZP_02183319.1| putative methylase [Flavobacteriales bacterium ALC-1]
gi|159876111|gb|EDP70170.1| putative methylase [Flavobacteriales bacterium ALC-1]
Length = 387
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VDL DI IN+ I + L + SLHRR NI + +A ++ ++
Sbjct: 133 VDLRFPDIKINVHIDRQRCTISLDTSGESLHRRGYKTATNIAPINEVLAAGLIMMSGWDG 192
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GT+ E ++
Sbjct: 193 QTDFMDPMCGSGTMLAEAAM 212
>gi|150003662|ref|YP_001298406.1| N6-adenine-specific DNA methylase [Bacteroides vulgatus ATCC 8482]
gi|294777515|ref|ZP_06742966.1| THUMP domain protein [Bacteroides vulgatus PC510]
gi|319640116|ref|ZP_07994843.1| N6-adenine-specific DNA methylase [Bacteroides sp. 3_1_40A]
gi|345517135|ref|ZP_08796613.1| hypothetical protein BSFG_00358 [Bacteroides sp. 4_3_47FAA]
gi|149932086|gb|ABR38784.1| putative N6-adenine-specific DNA methylase [Bacteroides vulgatus
ATCC 8482]
gi|254833902|gb|EET14211.1| hypothetical protein BSFG_00358 [Bacteroides sp. 4_3_47FAA]
gi|294448583|gb|EFG17132.1| THUMP domain protein [Bacteroides vulgatus PC510]
gi|317388394|gb|EFV69246.1| N6-adenine-specific DNA methylase [Bacteroides sp. 3_1_40A]
Length = 482
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
V ++ D+ +N+ I N+ + L + SLHRR + + L +A M+ L +
Sbjct: 133 VRINHPDVALNIHIAENKCTLSLDSSGESLHRRGYRQEAVEAPLNEVLAAGMI-LMTGWK 191
Query: 312 GDV-FLDPMCGGGTIPVECSL 331
G+ +DPMCG GTIP+E +L
Sbjct: 192 GECDLIDPMCGSGTIPIEAAL 212
>gi|28210173|ref|NP_781117.1| methyltransferase [Clostridium tetani E88]
gi|28202609|gb|AAO35054.1| methyltransferase [Clostridium tetani E88]
Length = 380
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 275 LPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
L T LH+R EF LK T+A +V L+ P + DP CG GTIP+E ++
Sbjct: 152 LDTTGPGLHKRGYREFAGEAPLKETLAAALVLLSKWEPSRILADPFCGSGTIPIEAAM 209
>gi|423313189|ref|ZP_17291125.1| hypothetical protein HMPREF1058_01737 [Bacteroides vulgatus
CL09T03C04]
gi|392686403|gb|EIY79709.1| hypothetical protein HMPREF1058_01737 [Bacteroides vulgatus
CL09T03C04]
Length = 482
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
V ++ D+ +N+ I N+ + L + SLHRR + + L +A M+ L +
Sbjct: 133 VRINHPDVALNIHIAENKCTLSLDSSGESLHRRGYRQEAVEAPLNEVLAAGMI-LMTGWK 191
Query: 312 GDV-FLDPMCGGGTIPVECSL 331
G+ +DPMCG GTIP+E +L
Sbjct: 192 GECDLIDPMCGSGTIPIEAAL 212
>gi|16759942|ref|NP_455559.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29142286|ref|NP_805628.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213162294|ref|ZP_03348004.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213857603|ref|ZP_03384574.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|289826800|ref|ZP_06545735.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|378960029|ref|YP_005217515.1| ribosomal RNA large subunit methyltransferase L [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
gi|81853307|sp|Q8Z7S6.1|RLMKL_SALTI RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|25513135|pir||AH0625 conserved hypothetical protein STY1082 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16502236|emb|CAD08187.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29137916|gb|AAO69477.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|374353901|gb|AEZ45662.1| Ribosomal RNA large subunit methyltransferase L [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
Length = 702
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|437797546|ref|ZP_20837686.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435289220|gb|ELO66201.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
Length = 697
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|428768505|ref|YP_007160295.1| rRNA (guanine-N(2)-)-methyltransferase [Cyanobacterium aponinum PCC
10605]
gi|428682784|gb|AFZ52251.1| rRNA (guanine-N(2)-)-methyltransferase [Cyanobacterium aponinum PCC
10605]
Length = 374
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLA---S 308
+D + DI IN I ++E + L T SLHRR + LK T+A ++ +A S
Sbjct: 131 IDTNSPDIVINAHIHHDECILSLDSTGESLHRRGYRPAVGLAPLKETLAAALLYIAEWDS 190
Query: 309 PIPGDVFLDPMCGGGTIPVECSL 331
IP DP CG GTI +E +L
Sbjct: 191 SIP---LYDPFCGSGTILIEGAL 210
>gi|392955817|ref|ZP_10321347.1| putative RNA methylase [Bacillus macauensis ZFHKF-1]
gi|391878059|gb|EIT86649.1| putative RNA methylase [Bacillus macauensis ZFHKF-1]
Length = 379
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNIVEFNI-TTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I + I ++ + L + T LH+R + LK T+A +++L + P F+DP C
Sbjct: 140 IEVAILKDKVTLTLDTSGTGLHKRGYRALHSEAPLKETMASALIKLTNWTPDKPFVDPFC 199
Query: 321 GGGTIPVECSL 331
G GTIP+E ++
Sbjct: 200 GSGTIPIEAAM 210
>gi|294674478|ref|YP_003575094.1| THUMP domain-containing protein [Prevotella ruminicola 23]
gi|294473787|gb|ADE83176.1| THUMP domain protein [Prevotella ruminicola 23]
Length = 499
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ I ++ + L + SLHRR + ++ L +A M+ L+ F+D
Sbjct: 139 DIRLNMHIAEDKCTLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMILLSGWQADTDFID 198
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+ +E +L
Sbjct: 199 PMCGSGTLLIEAAL 212
>gi|159905188|ref|YP_001548850.1| putative RNA methylase [Methanococcus maripaludis C6]
gi|159886681|gb|ABX01618.1| putative RNA methylase [Methanococcus maripaludis C6]
Length = 351
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 30/188 (15%)
Query: 234 SMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSL--------HRR 285
SME ER GG + V+L + I + I N Y GL + + + H R
Sbjct: 122 SMEIERKLGGIIKKKTSAEVNLKNPLKTIRVVISDNTMYTGLVLEKRDIEYFQNNRPHLR 181
Query: 286 NIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINE 345
F+ + P +A +V L+ G++ LDP CG G +E + + DI+E
Sbjct: 182 --AYFHPGCIMPKLARCLVNLSRVKEGEIVLDPFCGTGGFLIEA--GFLGCKLIGSDIDE 237
Query: 346 KLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPAC----------VDGIVTDLPFG 395
++V N+ N+ +L+++ V +++Q K +DGIVTD P+G
Sbjct: 238 QMVKGAILNL--NTYDLSKQ------VISIKQNDAKNVSKYLEELGIEKIDGIVTDPPYG 289
Query: 396 KRVGSKSN 403
K +
Sbjct: 290 ISTSKKGD 297
>gi|375362730|ref|YP_005130769.1| putative N6-adenine-specific DNA methylase, partial [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|371568724|emb|CCF05574.1| putative N6-adenine-specific DNA methylase [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
Length = 242
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 9/158 (5%)
Query: 176 QVNNVQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSM 235
QV Q + D ++ K ID + + +++L C R+ K +
Sbjct: 61 QVAEFQAKTFDELFEKTKAIDWRAYIPENAKFPVIGKSVKSVLASVPDCQRIVKKAIA-- 118
Query: 236 ESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNIT 293
E + GK N+ W+ + +Y ++I+L ++A + L + T LH+R V+
Sbjct: 119 EKLKLQSGKQNE---WIEETGPEYKVEISL--LKDKAVLTLDSSGTGLHKRGYRVDQGGA 173
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
+K T+A ++ L + P F+DP CG GTI +E +L
Sbjct: 174 PIKETLAAALILLTNWTPDRPFVDPFCGSGTIAIEAAL 211
>gi|383316132|ref|YP_005376974.1| putative N6-adenine-specific DNA methylase [Frateuria aurantia DSM
6220]
gi|379043236|gb|AFC85292.1| putative N6-adenine-specific DNA methylase [Frateuria aurantia DSM
6220]
Length = 729
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 96/243 (39%), Gaps = 58/243 (23%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIP 311
VD D+ D+ I++++R + A V + + LHRR E LK +A ++ L P
Sbjct: 130 VDTDEPDLRIHVRLRRDRASVSIDLAGAPLHRRGWREQQGEAPLKENLAAAIL-LRGRWP 188
Query: 312 -----GDVFLDPMCGGGTIPVECSLS------------YPHTFFVCGDINEKLVLKTQAN 354
G LDPMCG GT+ +E +L Y + DI L +A
Sbjct: 189 QRYADGASLLDPMCGSGTLLIEAALMAADVAPGLRREYYGFLGWQQHDIAVWKALLDEAR 248
Query: 355 VLHNSGNLNRELKVSPLVCNVRQLCFKPA----------------------------CVD 386
+ G R+L+ + + L + A D
Sbjct: 249 QRADEG--LRQLRPCLVGSDADGLMIQTAKRNAQAAGVAGFIQLERREMDRIQPPEGAAD 306
Query: 387 G--IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIG--RAILLTSDRKHLIQALHI 442
G +VT+ P+G+R+GS +LYR +G+++R + G A +L D L AL +
Sbjct: 307 GSLLVTNPPYGERLGSSQQMPMLYR----RLGEVLRERFGGWSAAILAGD-GELADALRL 361
Query: 443 TSA 445
Sbjct: 362 AGG 364
>gi|387770625|ref|ZP_10126804.1| S-adenosylmethionine-dependent methyltransferase [Pasteurella
bettyae CCUG 2042]
gi|386903991|gb|EIJ68790.1| S-adenosylmethionine-dependent methyltransferase [Pasteurella
bettyae CCUG 2042]
Length = 716
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 95/236 (40%), Gaps = 51/236 (21%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
VD D DI ++ + ++ + L ++ +LH R E T L+ T+A +V + P
Sbjct: 130 VDKDYPDIRVHAYLNRDDLVISLDLSGEALHLRGYREDTGTAPLRETLAAAIVLRSGWKP 189
Query: 312 GDVFLDPMCGGGTIPVECS----------------------------------------- 330
G +DPMCG GT+ +E +
Sbjct: 190 GTPLVDPMCGSGTLLIEAAQMEAKIAPQLHRMHWGFDFWKGHNQEAWDKVKTEAVELAEA 249
Query: 331 -LSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389
+ H F D++ +++ K Q N N+G + V +++ C PA ++
Sbjct: 250 EFNKHHPDFYGFDLDHRVLKKAQKNA-QNAGVAHLINWRQGDVASLKNPC--PAQTGTVI 306
Query: 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQI-GRAILLTSDRKHLIQALHITS 444
+ P+G+R+G+ LY +F G+ ++ Q G I + S + L+ L + S
Sbjct: 307 CNPPYGERLGTIPALIALYSVF----GQRLKEQFSGWNISVFSSEQGLLDCLRMRS 358
>gi|374628676|ref|ZP_09701061.1| N2-methylguanosine tRNA methyltransferase [Methanoplanus limicola
DSM 2279]
gi|373906789|gb|EHQ34893.1| N2-methylguanosine tRNA methyltransferase [Methanoplanus limicola
DSM 2279]
Length = 317
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 14/142 (9%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F+ + P A MV L+ +P D F DP CG G I +E L F GD++ ++
Sbjct: 155 FHPGVMMPLFARTMVNLSLAMPYDHFYDPFCGTGGIMLEAKLLGCRIF--GGDMDPLMLG 212
Query: 350 KTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNF-LLY 408
+ N+ L R + + F D + TDLP+G+ V + LY
Sbjct: 213 GCRQNL--PDAELFRT--------DASSMPFGDETFDAVATDLPYGQSVCIMGGSLDKLY 262
Query: 409 RLFLIEIGKIVRPQIGRAILLT 430
L EI +I++P+ RA+++T
Sbjct: 263 DSSLSEIRRILKPKR-RAVVVT 283
>gi|417708112|ref|ZP_12357145.1| hypothetical protein SFVA6_2930 [Shigella flexneri VA-6]
gi|417711711|ref|ZP_12360710.1| hypothetical protein SFK272_1451 [Shigella flexneri K-272]
gi|417716448|ref|ZP_12365377.1| hypothetical protein SFK227_1180 [Shigella flexneri K-227]
gi|417827049|ref|ZP_12473620.1| 23S rRNA methyltransferase [Shigella flexneri J1713]
gi|420319498|ref|ZP_14821345.1| ribosomal RNA large subunit methyltransferase L [Shigella flexneri
2850-71]
gi|420330308|ref|ZP_14831998.1| ribosomal RNA large subunit methyltransferase L [Shigella flexneri
K-1770]
gi|333001212|gb|EGK20780.1| hypothetical protein SFVA6_2930 [Shigella flexneri VA-6]
gi|333008933|gb|EGK28393.1| hypothetical protein SFK272_1451 [Shigella flexneri K-272]
gi|333020245|gb|EGK39515.1| hypothetical protein SFK227_1180 [Shigella flexneri K-227]
gi|335576493|gb|EGM62744.1| 23S rRNA methyltransferase [Shigella flexneri J1713]
gi|391253039|gb|EIQ12227.1| ribosomal RNA large subunit methyltransferase L [Shigella flexneri
2850-71]
gi|391257115|gb|EIQ16236.1| ribosomal RNA large subunit methyltransferase L [Shigella flexneri
K-1770]
Length = 702
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V +
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQS 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|24112361|ref|NP_706871.1| 23S rRNA m(2)G2445 methyltransferase [Shigella flexneri 2a str.
301]
gi|30062485|ref|NP_836656.1| 23S rRNA m(2)G2445 methyltransferase [Shigella flexneri 2a str.
2457T]
gi|110804964|ref|YP_688484.1| 23S rRNA m(2)G2445 methyltransferase [Shigella flexneri 5 str.
8401]
gi|384542525|ref|YP_005726587.1| putative oxidoreductase [Shigella flexneri 2002017]
gi|415853972|ref|ZP_11529862.1| RNA methylase family UPF0020 family protein [Shigella flexneri 2a
str. 2457T]
gi|417701336|ref|ZP_12350464.1| hypothetical protein SFK218_1429 [Shigella flexneri K-218]
gi|417722089|ref|ZP_12370922.1| hypothetical protein SFK304_1289 [Shigella flexneri K-304]
gi|417727452|ref|ZP_12376188.1| hypothetical protein SFK671_1125 [Shigella flexneri K-671]
gi|417732737|ref|ZP_12381402.1| hypothetical protein SF274771_1235 [Shigella flexneri 2747-71]
gi|417737872|ref|ZP_12386471.1| hypothetical protein SF434370_1210 [Shigella flexneri 4343-70]
gi|417742514|ref|ZP_12391059.1| 23S rRNA methyltransferase [Shigella flexneri 2930-71]
gi|418254670|ref|ZP_12879325.1| 23S rRNA methyltransferase [Shigella flexneri 6603-63]
gi|420340694|ref|ZP_14842209.1| ribosomal RNA large subunit methyltransferase L [Shigella flexneri
K-404]
gi|424837418|ref|ZP_18262055.1| 23S rRNA m(2)G2445 methyltransferase [Shigella flexneri 5a str.
M90T]
gi|81839435|sp|Q83RX5.1|RLMKL_SHIFL RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|123048306|sp|Q0T686.1|RLMKL_SHIF8 RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|24051228|gb|AAN42578.1| putative oxidoreductase [Shigella flexneri 2a str. 301]
gi|30040731|gb|AAP16462.1| putative oxidoreductase [Shigella flexneri 2a str. 2457T]
gi|110614512|gb|ABF03179.1| putative oxidoreductase [Shigella flexneri 5 str. 8401]
gi|281600310|gb|ADA73294.1| putative oxidoreductase [Shigella flexneri 2002017]
gi|313650804|gb|EFS15205.1| RNA methylase family UPF0020 family protein [Shigella flexneri 2a
str. 2457T]
gi|332759043|gb|EGJ89353.1| hypothetical protein SF434370_1210 [Shigella flexneri 4343-70]
gi|332759960|gb|EGJ90261.1| hypothetical protein SF274771_1235 [Shigella flexneri 2747-71]
gi|332762730|gb|EGJ92993.1| hypothetical protein SFK671_1125 [Shigella flexneri K-671]
gi|332767742|gb|EGJ97933.1| 23S rRNA methyltransferase [Shigella flexneri 2930-71]
gi|333006323|gb|EGK25832.1| hypothetical protein SFK218_1429 [Shigella flexneri K-218]
gi|333019962|gb|EGK39233.1| hypothetical protein SFK304_1289 [Shigella flexneri K-304]
gi|383466470|gb|EID61491.1| 23S rRNA m(2)G2445 methyltransferase [Shigella flexneri 5a str.
M90T]
gi|391272269|gb|EIQ31124.1| ribosomal RNA large subunit methyltransferase L [Shigella flexneri
K-404]
gi|397899799|gb|EJL16169.1| 23S rRNA methyltransferase [Shigella flexneri 6603-63]
Length = 702
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V +
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQS 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|352096031|ref|ZP_08956978.1| rRNA (guanine-N(2)-)-methyltransferase [Synechococcus sp. WH 8016]
gi|351677387|gb|EHA60536.1| rRNA (guanine-N(2)-)-methyltransferase [Synechococcus sp. WH 8016]
Length = 384
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+DLD+ D+ +++ + + L + SLHRR E LK +A ++RL+
Sbjct: 140 IDLDEPDVCLHVHLDREGGVLSLDGSGGSLHRRGYRAEMGDAPLKENLAAGLIRLSGWTG 199
Query: 312 GDVFLDPMCGGGTIPVE-CSLSYPHT 336
+DP+CG GT+ +E SL+ H
Sbjct: 200 TTPLVDPLCGSGTLLIEAASLAAGHA 225
>gi|254489815|ref|ZP_05103010.1| Putative RNA methylase family UPF0020 [Methylophaga thiooxidans
DMS010]
gi|224464900|gb|EEF81154.1| Putative RNA methylase family UPF0020 [Methylophaga thiooxydans
DMS010]
Length = 734
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMV------R 305
VDL D+ IN+ +++N+A V + ++ SLH+R N LK +A ++ R
Sbjct: 134 VDLFQPDLRINVYVKHNQAIVSIDLSGESLHKRGYRTHNTAAPLKENLAAAILLKAEWPR 193
Query: 306 LASPIPGDVFLDPMCGGGTIPVECSL 331
LA G +DPMCG GT +E ++
Sbjct: 194 LAK--QGWALVDPMCGSGTFLIEAAM 217
>gi|289424058|ref|ZP_06425844.1| methyltransferase [Peptostreptococcus anaerobius 653-L]
gi|289155483|gb|EFD04162.1| methyltransferase [Peptostreptococcus anaerobius 653-L]
Length = 382
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 273 VGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
+ + + SL++R E N ++ T+A +VRL PG + +DPMCG GTI +E ++
Sbjct: 154 LSIDTSGVSLYKRGYKELANKAPIRETLAAGLVRLTPWRPGRILVDPMCGSGTILIEAAM 213
>gi|150403072|ref|YP_001330366.1| putative RNA methylase [Methanococcus maripaludis C7]
gi|150034102|gb|ABR66215.1| putative RNA methylase [Methanococcus maripaludis C7]
Length = 350
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 30/180 (16%)
Query: 234 SMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSL--------HRR 285
SME ER GG + V L + I + I N+ Y GL + + + H R
Sbjct: 121 SMEIERKLGGIIKKKTSAEVSLKNPIKTIRVVISDNKIYTGLVLEKRDIEYFQNNRPHLR 180
Query: 286 NIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINE 345
F+ + P +A +V L+ G++ LDP CG G +E + + DI+E
Sbjct: 181 --AYFHPGCIMPKLARCLVNLSRVKEGEIVLDPFCGTGGFLIEA--GFLGCKLIGSDIDE 236
Query: 346 KLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPAC----------VDGIVTDLPFG 395
++V N+ N+ +L+++ V +++Q K +DGIVTD P+G
Sbjct: 237 QMVKGAILNL--NTYDLSKQ------VISIKQNDAKNVSKYLGELGIEKIDGIVTDPPYG 288
>gi|94272088|ref|ZP_01292065.1| Putative RNA methylase:THUMP [delta proteobacterium MLMS-1]
gi|93450241|gb|EAT01520.1| Putative RNA methylase:THUMP [delta proteobacterium MLMS-1]
Length = 382
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 212 NPEEN-LLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDY--DIDINLQIRY 268
NPE++ ++ RV+ +R+ ++ + A +D + D+ I+L IR
Sbjct: 95 NPEQSFMINARVSGSRISHSQYAALRLKDAIVDHFQQRSGRRPGIDKHQPDLVIDLHIRR 154
Query: 269 NEAYVGLPVTQTSLHRRNIVEFNI-TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPV 327
N A + L + SLHRR + ++ ++ T+A M+ A +DP CG GT+
Sbjct: 155 NRAVISLDLAGGSLHRRGYRQVSVEAPIQETLAAAMIDFAGWDGAKKLVDPCCGSGTLLA 214
Query: 328 EC 329
E
Sbjct: 215 EA 216
>gi|429748414|ref|ZP_19281609.1| THUMP domain protein [Capnocytophaga sp. oral taxon 332 str. F0381]
gi|429171171|gb|EKY12808.1| THUMP domain protein [Capnocytophaga sp. oral taxon 332 str. F0381]
Length = 394
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD+ D+ +++ I+ NE V L + SLH+R + NI + +A ++ ++
Sbjct: 133 VDIHHPDVQLHIHIQRNEVIVSLDSSGNSLHQRGYRMATNIAPINEVLAAGILLMSGWDG 192
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GT +E ++
Sbjct: 193 QCDFLDPMCGSGTFLIEAAM 212
>gi|420371124|ref|ZP_14871574.1| ribosomal RNA large subunit methyltransferase L [Shigella flexneri
1235-66]
gi|391319561|gb|EIQ76559.1| ribosomal RNA large subunit methyltransferase L [Shigella flexneri
1235-66]
Length = 702
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V +
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQS 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|291616937|ref|YP_003519679.1| hypothetical protein PANA_1384 [Pantoea ananatis LMG 20103]
gi|378767854|ref|YP_005196324.1| N6-Adenine-specific DNA methylase YcbY [Pantoea ananatis LMG 5342]
gi|291151967|gb|ADD76551.1| YcbY [Pantoea ananatis LMG 20103]
gi|365187337|emb|CCF10287.1| N6-Adenine-specific DNA methylase YcbY [Pantoea ananatis LMG 5342]
Length = 704
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD + DI IN+ + + A + L ++ ++LH+R + LK +A +V + P
Sbjct: 130 VDREQADIRINVWLDDDRASIALDLSGSALHQRGYRQQTGQAPLKENLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
+DPMCG GT+ +E +L
Sbjct: 190 STPLIDPMCGSGTLLIEAAL 209
>gi|386015302|ref|YP_005933583.1| N6-Adenine-specific DNA methylase YcbY [Pantoea ananatis AJ13355]
gi|386079956|ref|YP_005993481.1| N6-Adenine-specific DNA methylase YcbY [Pantoea ananatis PA13]
gi|327393365|dbj|BAK10787.1| N6-Adenine-specific DNA methylase YcbY [Pantoea ananatis AJ13355]
gi|354989137|gb|AER33261.1| N6-Adenine-specific DNA methylase YcbY [Pantoea ananatis PA13]
Length = 704
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD + DI IN+ + + A + L ++ ++LH+R + LK +A +V + P
Sbjct: 130 VDREQADIRINVWLDDDRASIALDLSGSALHQRGYRQQTGQAPLKENLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
+DPMCG GT+ +E +L
Sbjct: 190 STPLIDPMCGSGTLLIEAAL 209
>gi|213421521|ref|ZP_03354587.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 287
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|374636429|ref|ZP_09707999.1| THUMP domain-containing protein [Methanotorris formicicus Mc-S-70]
gi|373558990|gb|EHP85305.1| THUMP domain-containing protein [Methanotorris formicicus Mc-S-70]
Length = 339
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGL 275
F V CNR G+H TS + ER G ++ + + VDL +YD IN++I + AY+ +
Sbjct: 98 FVVRCNRRGRHKYTSEDVERFIGREILENFDLKVDLKNYDFKINIEIIQDTAYISI 153
>gi|168186327|ref|ZP_02620962.1| nucleic acid methylase [Clostridium botulinum C str. Eklund]
gi|169295675|gb|EDS77808.1| nucleic acid methylase [Clostridium botulinum C str. Eklund]
Length = 384
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I + I +E V L + +LH+R E N+ LK T+A +V L++ +F+DP C
Sbjct: 140 ILISILNDEVTVLLDTSGEALHKRGYREKGNLAPLKETLAAALVTLSNWRYDRLFIDPFC 199
Query: 321 GGGTIPVECSL 331
G GTIP+E ++
Sbjct: 200 GSGTIPIEAAM 210
>gi|398814959|ref|ZP_10573635.1| putative N6-adenine-specific DNA methylase [Brevibacillus sp. BC25]
gi|398035604|gb|EJL28839.1| putative N6-adenine-specific DNA methylase [Brevibacillus sp. BC25]
Length = 385
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 281 SLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
LH+R E LK T+A M+ L+ P VF+DP CG GT+P+E +L
Sbjct: 159 GLHKRGYRELIGQAPLKETMAAAMIMLSRWKPDRVFMDPFCGSGTLPIEAAL 210
>gi|113953993|ref|YP_731645.1| RNA methylase family protein [Synechococcus sp. CC9311]
gi|113881344|gb|ABI46302.1| Putative RNA methylase family UPF0020 family [Synechococcus sp.
CC9311]
Length = 391
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+DL++ D+ +++ + + L + SLHRR E LK +A ++RL+
Sbjct: 147 IDLEEPDVSLHVHLDREGGVLSLDGSGGSLHRRGYRAEMGDAPLKENLAAGLIRLSGWTG 206
Query: 312 GDVFLDPMCGGGTIPVE-CSLSYPHT 336
+DP+CG GT+ +E SL+ H
Sbjct: 207 TTPLIDPLCGSGTLVIEAASLAAGHA 232
>gi|428150932|ref|ZP_18998688.1| 23S rRNA (guanine-N-2-)-methyltransferase rlmL) [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
gi|427539201|emb|CCM94826.1| 23S rRNA (guanine-N-2-)-methyltransferase rlmL) [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
Length = 238
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A++ L ++ LH R + + +K +A +V + +P
Sbjct: 130 VDRESPDLRINVWLNKETAHISLDLSGEGLHLRGYRDGTGMAPIKENLAAAIVMRSGWVP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|336054031|ref|YP_004562318.1| N6-adenine-specific DNA methylase [Lactobacillus kefiranofaciens
ZW3]
gi|333957408|gb|AEG40216.1| possible N6-adenine-specific DNA methylase [Lactobacillus
kefiranofaciens ZW3]
Length = 375
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 94/200 (47%), Gaps = 41/200 (20%)
Query: 256 DDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPG-D 313
++Y +DI+ I N A + L T SL +R VE LK A +++L +P G
Sbjct: 137 NEYPLDIH--IYKNIARISLDTTGASLFKRGYRVEHGGAPLKENFAAGLLKL-TPYDGTH 193
Query: 314 VFLDPMCGGGTIPVECSL----SYPHTF---------FVCGDINEKLV--LKTQANVLHN 358
+DPM G GT+ +E +L P T+ + D+++K V KTQ L
Sbjct: 194 PLIDPMTGSGTLAIEAALIAKNIAPGTWRKFAFDGFDWFNADLHQKAVAEAKTQVKPLAA 253
Query: 359 ---SGNLNRE-LKVSPLVCN----VRQLCFKPACVDGIVTDL---------PFGKRVGSK 401
+ ++++ L+++ L + ++ + FK V TDL P+GKR+ +
Sbjct: 254 PIWASDIDQSVLEIAKLNAHNAGVLQDIRFKQVAVKDFTTDLENGVIIANPPYGKRLKDR 313
Query: 402 SNNFLLYRLFLIEIGKIVRP 421
+ LY+ ++G+++RP
Sbjct: 314 ESAEALYK----QMGEVLRP 329
>gi|213963267|ref|ZP_03391524.1| putative RNA methylase family protein [Capnocytophaga sputigena
Capno]
gi|213954129|gb|EEB65454.1| putative RNA methylase family protein [Capnocytophaga sputigena
Capno]
Length = 392
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD+ D+ I++ I+ NE V L + SLH+R N+ + +A ++ ++
Sbjct: 139 VDVLHPDVAIHIHIQRNEVIVSLDSSGASLHQRGYRTATNMAPINEVLAAGILLMSGWKG 198
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GT +E ++
Sbjct: 199 QSDFLDPMCGSGTFLIEAAM 218
>gi|300725929|ref|ZP_07059391.1| putative RNA methylase [Prevotella bryantii B14]
gi|299776780|gb|EFI73328.1| putative RNA methylase [Prevotella bryantii B14]
Length = 493
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
+ + + DI +N+ + ++A + L + SLHRR + ++ L +A M+ +
Sbjct: 133 ISISNPDIRLNIHVAEDKATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMILMTGWKG 192
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GT+ VE +L
Sbjct: 193 ETDFIDPMCGSGTLLVEAAL 212
>gi|335042624|ref|ZP_08535651.1| putative N6-adenine-specific DNA methylase [Methylophaga
aminisulfidivorans MP]
gi|333789238|gb|EGL55120.1| putative N6-adenine-specific DNA methylase [Methylophaga
aminisulfidivorans MP]
Length = 734
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VDL D+ IN+ +++N+A V + ++ SLH+R V LK +A ++ L++ P
Sbjct: 134 VDLYQPDVRINVYLKHNQATVSIDLSGESLHKRGYRVSNTAAPLKEHLAAAIL-LSAEWP 192
Query: 312 -----GDVFLDPMCGGGTIPVECSL 331
G +DPMCG GT +E ++
Sbjct: 193 KLARQGWALIDPMCGSGTFLIEAAM 217
>gi|336173880|ref|YP_004581018.1| rRNA (guanine-N(2)-)-methyltransferase [Lacinutrix sp. 5H-3-7-4]
gi|334728452|gb|AEH02590.1| rRNA (guanine-N(2)-)-methyltransferase [Lacinutrix sp. 5H-3-7-4]
Length = 390
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VDL D+ IN+ I + + L + SLH+R NI + +A M+ L+
Sbjct: 133 VDLRFPDLKINVHIDRSICTISLDTSGESLHKRGYKTATNIAPINEVLAAGMIMLSGWDG 192
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GT+ E ++
Sbjct: 193 QSDFMDPMCGSGTVLAEAAM 212
>gi|256847311|ref|ZP_05552757.1| conserved hypothetical protein [Lactobacillus coleohominis
101-4-CHN]
gi|256715975|gb|EEU30950.1| conserved hypothetical protein [Lactobacillus coleohominis
101-4-CHN]
Length = 377
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 102/259 (39%), Gaps = 64/259 (24%)
Query: 224 CNRVGKHTVTSMES--ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYV--GLPVTQ 279
+R H V S+++ ++A K+ Y L + L++ N+ YV L T
Sbjct: 98 SHRSQLHNVPSVQAIVKKAIAEKMMAVYHRRTKLPETGQLYPLEVAINKDYVLLTLDATG 157
Query: 280 TSLHRRNIV-EFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTF- 337
SL +R + LK +A +V LA P + F+DP+CG GTIP+E +L H
Sbjct: 158 ESLFKRGYRRDKGGAPLKENMAAALVLLAHWFPDNPFVDPVCGSGTIPIEAAL-LGHNIA 216
Query: 338 ------FVCG---------------------------------DINEKLVLKTQANVLHN 358
F C DI++K+V Q N
Sbjct: 217 PGINRSFACEQWSNLMPSGLPDDVRDDADAQADYDVKLEIHGYDIDQKMVEIAQRN--SQ 274
Query: 359 SGNLNRELKVSPLVCNVRQLCFKPACVDG----IVTDLPFGKRVGSKSNNFLLYRLFLIE 414
+ L ++ +QL K D IV + P+G+R+ + LYR +
Sbjct: 275 AAGLTHDI-------TFKQLAVKDWQTDEINGVIVANPPYGERLSDRETVHELYR----Q 323
Query: 415 IGKIVRPQIGRA-ILLTSD 432
+G++ RP + +LT+D
Sbjct: 324 MGELYRPMTSWSKYILTAD 342
>gi|213586707|ref|ZP_03368533.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 267
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|302347993|ref|YP_003815631.1| methyltransferase [Acidilobus saccharovorans 345-15]
gi|302328405|gb|ADL18600.1| Putative methyltransferase [Acidilobus saccharovorans 345-15]
Length = 336
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNL 362
MV L+ G FLD CG GT+ +E L+ + +C DI+ + ++ N
Sbjct: 176 MVNLSRLPYGGTFLDAFCGTGTLALEAVLA-GGSKALCVDIDGSMAYGSKTNFSWAG--- 231
Query: 363 NRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGK--RVGSKSNNFLLYRLFLIEIGKIVR 420
L L+ N R+L K VD I +D P+G+ RV +S L+ FL E ++++
Sbjct: 232 ---LDSLSLIANARRLPLKEGSVDSIASDPPYGRSTRVVGESYGDLV-EGFLQESARVLK 287
Query: 421 P 421
P
Sbjct: 288 P 288
>gi|213426892|ref|ZP_03359642.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
Length = 248
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|318040492|ref|ZP_07972448.1| putative RNA methylase [Synechococcus sp. CB0101]
Length = 384
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VDLDD D+ I++ + +A + + + SLHRR + LK +A ++RL
Sbjct: 136 VDLDDPDLSIHVHLGGGQARLSVDGSGESLHRRGYRPRMGLAPLKENLAAGLIRLTGWDG 195
Query: 312 GDVFLDPMCGGGTIPVECS 330
DP+CG GT+ +E +
Sbjct: 196 HLPLADPLCGSGTLLIEAA 214
>gi|427722610|ref|YP_007069887.1| rRNA (guanine-N(2)-)-methyltransferase [Leptolyngbya sp. PCC 7376]
gi|427354330|gb|AFY37053.1| rRNA (guanine-N(2)-)-methyltransferase [Leptolyngbya sp. PCC 7376]
Length = 374
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
V+++D D+ IN I N + L + SLHRR LK A ++ LA P
Sbjct: 130 VNVEDPDVQINAHIHENRCILSLDSSGHSLHRRGYRPAMGKAPLKENFAAALLDLAEWTP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
+DP+CG GT +E +L
Sbjct: 190 DLPLVDPLCGSGTFLIEGAL 209
>gi|448401316|ref|ZP_21571552.1| RNA methylase [Haloterrigena limicola JCM 13563]
gi|445666579|gb|ELZ19238.1| RNA methylase [Haloterrigena limicola JCM 13563]
Length = 365
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 16/118 (13%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F ++ P +A + +A PG LDPMCG G + VE L D K+
Sbjct: 183 FQPGSMDPLLARAVANIAGARPGATILDPMCGTGGVLVEAGLVGADAIGT--DAQAKMAD 240
Query: 350 KTQANVLHNSGNLNRELKVSPLVC----------NVRQLCFKPACVDGIVTDLPFGKR 397
+ N+ H L R+ + SP C + +L VDG+V D P+G++
Sbjct: 241 GARTNLRH---FLERD-EPSPTGCDRGTWHVGRGDATRLPLVDNAVDGVVFDAPYGRQ 294
>gi|168233434|ref|ZP_02658492.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|194469802|ref|ZP_03075786.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194456166|gb|EDX45005.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|205332462|gb|EDZ19226.1| putative RNA methylase family UPF0020 [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
Length = 702
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GMPLLDPMCGSGTLLIEAAM 209
>gi|423397627|ref|ZP_17374828.1| hypothetical protein ICU_03321 [Bacillus cereus BAG2X1-1]
gi|423408485|ref|ZP_17385634.1| hypothetical protein ICY_03170 [Bacillus cereus BAG2X1-3]
gi|401649673|gb|EJS67251.1| hypothetical protein ICU_03321 [Bacillus cereus BAG2X1-1]
gi|401657575|gb|EJS75083.1| hypothetical protein ICY_03170 [Bacillus cereus BAG2X1-3]
Length = 379
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 57/205 (27%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 149 ATLTIDASGVGLHKRGYRMDQGEAPLKETLAASLIKLTNWKPDQPFVDPFCGSGTIPIEA 208
Query: 330 SL-------------------------------------SYPHTFFVCG-DINEKLVLKT 351
+L +Y + G DI+ +++
Sbjct: 209 ALIGQNIAPGFNRGFASDEWGWVGKQNWREARQEAEDLANYDQRLQIIGSDIDHRMIRVA 268
Query: 352 QANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG----IVTDLPFGKRVGSKSNNFLL 407
Q N E+ +S L+ +Q+ K +VT+ P+G+R+ K+ L
Sbjct: 269 QDNA--------EEVGLSDLI-TFKQMQVKDFTTKEDYGYVVTNPPYGERLSEKALVEQL 319
Query: 408 YRLFLIEIGKIVRP-QIGRAILLTS 431
Y+ E+G++ RP A +LTS
Sbjct: 320 YK----EMGQVFRPLDTWSAYVLTS 340
>gi|52080724|ref|YP_079515.1| RNA methylase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319645317|ref|ZP_07999550.1| YpsC protein [Bacillus sp. BT1B_CT2]
gi|404489608|ref|YP_006713714.1| RNA methyltransferase YpsC [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52003935|gb|AAU23877.1| Putative RNA methylase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52348599|gb|AAU41233.1| putative RNA methyltransferase YpsC [Bacillus licheniformis DSM 13
= ATCC 14580]
gi|317393126|gb|EFV73920.1| YpsC protein [Bacillus sp. BT1B_CT2]
Length = 383
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 11/111 (9%)
Query: 224 CNRVGKHTVTS-MESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTS 281
C R+ K + ++SE G+ WL + +Y I+++L ++A + L +
Sbjct: 109 CQRIVKKAIAEKLKSEYQTQGE------WLEETGPEYKIEVSL--LKDKAVITLDSSGAG 160
Query: 282 LHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
LH+R LK T+A ++ L + P F+DP CG GTIP+E +L
Sbjct: 161 LHKRGYRTGQGEAPLKETLAAALILLTNWTPDRPFVDPFCGSGTIPIEAAL 211
>gi|417372456|ref|ZP_12142745.1| 23S rRNA-methyltransferase RlmL, partial [Salmonella enterica
subsp. enterica serovar Inverness str. R8-3668]
gi|353605217|gb|EHC59783.1| 23S rRNA-methyltransferase RlmL, partial [Salmonella enterica
subsp. enterica serovar Inverness str. R8-3668]
Length = 457
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|433445186|ref|ZP_20409759.1| N6-adenine-specific DNA methylase [Anoxybacillus flavithermus
TNO-09.006]
gi|432001220|gb|ELK22102.1| N6-adenine-specific DNA methylase [Anoxybacillus flavithermus
TNO-09.006]
Length = 383
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I + + + A + + + LH+R V LK T+A +VRL + IP F+DP C
Sbjct: 139 IEVALHKDVATLTIDTSGVGLHKRGYRVRQGEAPLKETLAAALVRLTNWIPDRPFVDPFC 198
Query: 321 GGGTIPVECSL 331
G GTI +E +L
Sbjct: 199 GSGTIAIEAAL 209
>gi|421909099|ref|ZP_16338921.1| 23S rRNA (guanine-N-2-)-methyltransferase rlmL EC 2.1.1.-)
[Klebsiella pneumoniae subsp. pneumoniae ST258-K26BO]
gi|410116943|emb|CCM81546.1| 23S rRNA (guanine-N-2-)-methyltransferase rlmL EC 2.1.1.-)
[Klebsiella pneumoniae subsp. pneumoniae ST258-K26BO]
Length = 234
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A++ L ++ LH R + + +K +A +V + +P
Sbjct: 130 VDRESPDLRINVWLNKETAHISLDLSGEGLHLRGYRDGTGMAPIKENLAAAIVMRSGWVP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|423682690|ref|ZP_17657529.1| RNA methylase [Bacillus licheniformis WX-02]
gi|383439464|gb|EID47239.1| RNA methylase [Bacillus licheniformis WX-02]
Length = 383
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 11/111 (9%)
Query: 224 CNRVGKHTVTS-MESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTS 281
C R+ K + ++SE G+ WL + +Y I+++L ++A + L +
Sbjct: 109 CQRIVKKAIAEKLKSEYQTQGE------WLEETGPEYKIEVSL--LKDKAVITLDSSGAG 160
Query: 282 LHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
LH+R LK T+A ++ L + P F+DP CG GTIP+E +L
Sbjct: 161 LHKRGYRTGQGEAPLKETLAAALILLTNWTPDRPFVDPFCGSGTIPIEAAL 211
>gi|311280150|ref|YP_003942381.1| rRNA (guanine-N(2)-)-methyltransferase [Enterobacter cloacae SCF1]
gi|308749345|gb|ADO49097.1| rRNA (guanine-N(2)-)-methyltransferase [Enterobacter cloacae SCF1]
Length = 701
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+++ A + L ++ LH R + I +K +A +V + P
Sbjct: 130 VDRENPDLRINVRLNKETANISLDLSGDGLHLRGYRDRTGIAPIKENLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPMLDPMCGSGTLLIEAAM 209
>gi|213022534|ref|ZP_03336981.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 248
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLATAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|448503145|ref|ZP_21612912.1| RNA methylase [Halorubrum coriense DSM 10284]
gi|445693154|gb|ELZ45314.1| RNA methylase [Halorubrum coriense DSM 10284]
Length = 374
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F ++ P A LA PG LDPMCG G +P+E L V D K+V
Sbjct: 170 FQPGSMAPADARAYANLAGAAPGRTLLDPMCGTGGLPLEAGLVGADA--VACDAQAKMVR 227
Query: 350 KTQAN---VLHNSGNLNREL-KVSP----LVCNVRQLCFKPACVDGIVTDLPFGK 396
+ N L + R+ SP + L F VDG+ D P+G+
Sbjct: 228 GARRNFREYLDADDSATRDADDPSPDWHVARGDATALPFPDDAVDGVAFDAPYGR 282
>gi|89099853|ref|ZP_01172725.1| methyltransferase [Bacillus sp. NRRL B-14911]
gi|89085411|gb|EAR64540.1| methyltransferase [Bacillus sp. NRRL B-14911]
Length = 373
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I + + + A + L + + LH+R LK T+A +V+L + P F DP C
Sbjct: 129 IEISMLKDTATLTLDASGSGLHKRGYRAGQGEAPLKETLAAALVQLTNWTPDKPFADPFC 188
Query: 321 GGGTIPVECSL 331
G GTIP+E +L
Sbjct: 189 GSGTIPIEAAL 199
>gi|51893540|ref|YP_076231.1| hypothetical protein STH2402 [Symbiobacterium thermophilum IAM
14863]
gi|51857229|dbj|BAD41387.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 415
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 52/203 (25%)
Query: 258 YDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFL 316
Y I+++L + A V L T LH+R + +K T+A MV L+ P L
Sbjct: 141 YSIEVSLL--KDVATVTLDTTGPGLHKRGYRKLVTEAPIKETLAAAMVLLSRWHPDRPLL 198
Query: 317 DPMCGGGTIPVECSL-----------SYPHTFFVC----------------GDINEKL-- 347
DP CG GTIP+E +L S+ + C D + L
Sbjct: 199 DPCCGSGTIPIEAALIGHNLAPGLHRSFDAETWGCIPARLWDEAREEGFDLADYDRPLDI 258
Query: 348 --------VLKTQANVLHNSGNLNRELKVS--PLVCNVRQLCFKPACVDGIVTDLPFGKR 397
L+ A+ L +G L+R +++ PL Q + A ++T+ P+G+R
Sbjct: 259 RGSDIDPGALELAAHHLRAAG-LSRSVRLERKPL-----QEIGRDAPYGYLITNPPYGER 312
Query: 398 VGSKSNNFLLYRLFLIEIGKIVR 420
+G + LYR +IG++VR
Sbjct: 313 MGEREAVEALYR----DIGRLVR 331
>gi|344340993|ref|ZP_08771916.1| Ribosomal RNA large subunit methyltransferase L [Thiocapsa marina
5811]
gi|343799238|gb|EGV17189.1| Ribosomal RNA large subunit methyltransferase L [Thiocapsa marina
5811]
Length = 725
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYN-MVRLASP- 309
VD + D+ I++ + ++A V + ++ TSLHRR E LK +A ++R P
Sbjct: 132 VDPESPDLRIHVYVHQDQASVSIDLSGTSLHRRGYRSEGTSAPLKENLAAAILLRAGWPD 191
Query: 310 --IPGDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E +L
Sbjct: 192 IAAEGGALLDPMCGSGTLVIEGAL 215
>gi|288932858|ref|YP_003436918.1| RNA methylase [Ferroglobus placidus DSM 10642]
gi|288895106|gb|ADC66643.1| putative RNA methylase [Ferroglobus placidus DSM 10642]
Length = 325
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 105/255 (41%), Gaps = 40/255 (15%)
Query: 222 VTCNRVGKHTVTSMESERAFGGKLNDTYFWL----VDLDDYDIDINLQIRYNEAYVGLPV 277
V +G V S E E+ G F+ + + + D + + N Y G +
Sbjct: 86 VRVRNIGGRFVPSNEFEKELG-----AIFYRRGAKISVSNPDKIFRVYVTENNVYAGWLI 140
Query: 278 ----TQTSLHRRNIVE--FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
T+ L RR ++ F + P A ++V + + V LDPMCG GT+ +E L
Sbjct: 141 HVTNTKQFLERRPDLKPFFRPGAVVPRFARSLVNITG-VENGVVLDPMCGTGTMIIEAGL 199
Query: 332 SYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTD 391
+ F+ + EK+ N+ + + L V+ +V + + L VDGIVTD
Sbjct: 200 M--NLDFIGVEAFEKIAKGCAINLRYYN------LPVNVIVGDAKNLPLADESVDGIVTD 251
Query: 392 LPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD------------RKHLIQA 439
P+ + S + LY E +++R + R + LT+ Q
Sbjct: 252 YPYLQSSMSFGDLRELYEKSFPEFHRVLRGE--RIVFLTNMDVEEFFEDYFILESKFYQK 309
Query: 440 LH--ITSALWKCRKQ 452
+H +T ++ CRK+
Sbjct: 310 VHKSLTRRIYVCRKK 324
>gi|404329394|ref|ZP_10969842.1| hypothetical protein SvinD2_04824 [Sporolactobacillus vineae DSM
21990 = SL153]
Length = 384
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 251 WLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASP 309
W + D I + + + A + + + LH+R + N LK T+A M+ L+
Sbjct: 131 WFAE-DGPMFKIQVALDKDVATLSIDTSGEGLHKRGYRQLHNQAPLKETLASAMILLSRW 189
Query: 310 IPGDVFLDPMCGGGTIPVECSL 331
P F+DP CG GT+P+E ++
Sbjct: 190 TPDRPFVDPFCGSGTLPIEAAM 211
>gi|339448363|ref|ZP_08651919.1| rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus fructivorans
KCTC 3543]
Length = 373
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 42/207 (20%)
Query: 264 LQIRYN--EAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDV-FLDPM 319
L++R N E L T SL +R V LK +A ++ L + P ++ FLDPM
Sbjct: 140 LEVRVNKDEVMDTLDTTGPSLFKRGYRVAKGEAPLKENMAAALILLTNWHPEEMPFLDPM 199
Query: 320 CGGGTIPVECSL-------SYPHTF------FVCGDINEKLVLKTQANVLHNS------G 360
CG GTIP+E +L Y F +V ++ +K+ + A ++S
Sbjct: 200 CGSGTIPIEAALIARNIAPGYNREFVFEDWDWVDPELVKKIRAEADAKADYDSQFDIMAS 259
Query: 361 NLNREL----KVSPLVCN-VRQLCFKPACV--------DGI-VTDLPFGKRVGSKSNNFL 406
++N ++ KV+ + + FK V DG+ VT+ P+G+R+G
Sbjct: 260 DVNEQMVNYAKVNAEEAGLLHDIQFKQVAVQDFHTDKQDGVLVTNPPYGQRMGDSKEVAQ 319
Query: 407 LYRLFLIEIGKIVRP-QIGRAILLTSD 432
LY E+GK+ P + LTSD
Sbjct: 320 LYH----EMGKVFIPMKTWSKYYLTSD 342
>gi|257076179|ref|ZP_05570540.1| methyltransferase [Ferroplasma acidarmanus fer1]
Length = 323
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F+ +L P A +V + GD LDP CG G I +E S+ + D +V+
Sbjct: 153 FSPVSLHPKYARYLVNTSGTAEGDTLLDPFCGTGGILIEASMLGRKI--IGNDSELNMVM 210
Query: 350 KTQANV----LHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNF 405
T+ N + N N L ++ L + + VDGIVTD+P+G+ G +++
Sbjct: 211 GTKLNFKYFGIENYKMYN--LDIASLSLDKK--------VDGIVTDMPYGRSSGINNHDI 260
Query: 406 L-LYRLFLIEIGKIVR 420
+ LY+ I+ ++++
Sbjct: 261 VELYQESFIKFNELLK 276
>gi|359405440|ref|ZP_09198206.1| THUMP domain protein [Prevotella stercorea DSM 18206]
gi|357558645|gb|EHJ40131.1| THUMP domain protein [Prevotella stercorea DSM 18206]
Length = 499
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
+ + + DI +N+ I +A + L + SLHRR + ++ L +A M+ +
Sbjct: 132 ISVSNPDIRLNIHIAEADATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMILMTGWRG 191
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GT+ VE +L
Sbjct: 192 ETDFIDPMCGSGTLLVEAAL 211
>gi|406837581|ref|ZP_11097175.1| hypothetical protein LvinD2_03149 [Lactobacillus vini DSM 20605]
Length = 379
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 230 HTVTSMES--ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYN--EAYVGLPVTQTSLHRR 285
H+V +++ +RA KL+ Y L + L++ N + + L T SL +R
Sbjct: 104 HSVPDVQAIVKRAVVDKLSQIYHRHGHLPESGAKYPLEVAINKDQVLLTLDTTGPSLFKR 163
Query: 286 NI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
+E LK A +V LA P F+DP+CG GTIP+E +L
Sbjct: 164 GYRLEKGPAPLKENFAAALVLLAHWYPEKPFVDPVCGSGTIPIEAAL 210
>gi|406895700|gb|EKD40196.1| hypothetical protein ACD_75C00144G0005 [uncultured bacterium]
Length = 721
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
V D + I+L + N A + L ++ SLHRR + LK T+ +V L S P
Sbjct: 144 VKTDRPGVRIHLHVEKNLATISLDLSGESLHRRGYRDKSGKAPLKETLGAAIVAL-SGWP 202
Query: 312 GD--VFLDPMCGGGTIPVECSLSY 333
GD +DPMCG GT+ +E ++ +
Sbjct: 203 GDPGTLIDPMCGTGTLLIEAAMMF 226
>gi|423454882|ref|ZP_17431735.1| hypothetical protein IEE_03626 [Bacillus cereus BAG5X1-1]
gi|423472458|ref|ZP_17449201.1| hypothetical protein IEM_03763 [Bacillus cereus BAG6O-2]
gi|423524538|ref|ZP_17501011.1| hypothetical protein IGC_03921 [Bacillus cereus HuA4-10]
gi|423555572|ref|ZP_17531875.1| hypothetical protein II3_00777 [Bacillus cereus MC67]
gi|401135851|gb|EJQ43448.1| hypothetical protein IEE_03626 [Bacillus cereus BAG5X1-1]
gi|401170381|gb|EJQ77622.1| hypothetical protein IGC_03921 [Bacillus cereus HuA4-10]
gi|401196976|gb|EJR03914.1| hypothetical protein II3_00777 [Bacillus cereus MC67]
gi|402427990|gb|EJV60088.1| hypothetical protein IEM_03763 [Bacillus cereus BAG6O-2]
Length = 379
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R +E LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 149 ATLTIDASGVGLHKRGYRLEQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 208
Query: 330 SL 331
+L
Sbjct: 209 AL 210
>gi|65318924|ref|ZP_00391883.1| COG0116: Predicted N6-adenine-specific DNA methylase [Bacillus
anthracis str. A2012]
gi|118477109|ref|YP_894260.1| methyltransferase [Bacillus thuringiensis str. Al Hakam]
gi|228914235|ref|ZP_04077851.1| hypothetical protein bthur0012_14680 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228926690|ref|ZP_04089759.1| hypothetical protein bthur0010_14060 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228945259|ref|ZP_04107615.1| hypothetical protein bthur0007_14220 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228984740|ref|ZP_04144912.1| hypothetical protein bthur0001_14410 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229138354|ref|ZP_04266948.1| hypothetical protein bcere0013_14740 [Bacillus cereus BDRD-ST26]
gi|229155228|ref|ZP_04283339.1| hypothetical protein bcere0010_14210 [Bacillus cereus ATCC 4342]
gi|229183854|ref|ZP_04311071.1| hypothetical protein bcere0004_14220 [Bacillus cereus BGSC 6E1]
gi|229195861|ref|ZP_04322620.1| hypothetical protein bcere0001_14240 [Bacillus cereus m1293]
gi|386735363|ref|YP_006208544.1| Methyltransferase [Bacillus anthracis str. H9401]
gi|118416334|gb|ABK84753.1| methyltransferase [Bacillus thuringiensis str. Al Hakam]
gi|228587634|gb|EEK45693.1| hypothetical protein bcere0001_14240 [Bacillus cereus m1293]
gi|228599703|gb|EEK57306.1| hypothetical protein bcere0004_14220 [Bacillus cereus BGSC 6E1]
gi|228628153|gb|EEK84869.1| hypothetical protein bcere0010_14210 [Bacillus cereus ATCC 4342]
gi|228645119|gb|EEL01357.1| hypothetical protein bcere0013_14740 [Bacillus cereus BDRD-ST26]
gi|228774938|gb|EEM23332.1| hypothetical protein bthur0001_14410 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228814494|gb|EEM60759.1| hypothetical protein bthur0007_14220 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228833066|gb|EEM78634.1| hypothetical protein bthur0010_14060 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228845439|gb|EEM90474.1| hypothetical protein bthur0012_14680 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|384385215|gb|AFH82876.1| Methyltransferase [Bacillus anthracis str. H9401]
Length = 381
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R V+ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 151 ATLTIDASGVGLHKRGYRVDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 210
Query: 330 SL 331
+L
Sbjct: 211 AL 212
>gi|407795580|ref|ZP_11142538.1| hypothetical protein MJ3_01717 [Salimicrobium sp. MJ3]
gi|407019921|gb|EKE32635.1| hypothetical protein MJ3_01717 [Salimicrobium sp. MJ3]
Length = 405
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 90/224 (40%), Gaps = 56/224 (25%)
Query: 227 VGKHTVTSMESERAFGGKLNDT-YFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRR 285
V K V M+ + +L +T F+ V++D I +EA++ L + + LH+R
Sbjct: 144 VKKAIVERMKQKYGIADRLEETGAFYRVEVD---------INKDEAWLTLDTSGSGLHKR 194
Query: 286 NI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL------------- 331
V LK T+A ++++ + F+D CG GTIP+E +L
Sbjct: 195 GYRVGQGEAPLKETLAAALIQVTNWRGDAPFVDLFCGSGTIPIEAALIGQNIAPGFNREF 254
Query: 332 ------------------------SYPHTFFVCG-DINEKLVLKTQANVLHNSGNLNREL 366
Y H + G DI+ K++ ++AN + L
Sbjct: 255 ASENWSFVSDRYWDAAFEEAEDKAQYDHPVNIQGMDIDPKMIEISKANAMEAG------L 308
Query: 367 KVSPLVCNVRQLCFKPACVDG-IVTDLPFGKRVGSKSNNFLLYR 409
L ++ FKP G +V++ P+G+R+G + YR
Sbjct: 309 GELILFKQMQARDFKPVEKGGYLVSNPPYGERIGDRKEVEKTYR 352
>gi|377809736|ref|YP_005004957.1| hypothetical protein PECL_1013 [Pediococcus claussenii ATCC
BAA-344]
gi|361056477|gb|AEV95281.1| hypothetical protein PECL_1013 [Pediococcus claussenii ATCC
BAA-344]
Length = 384
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 215 ENLLKFRVTCNRVGK------HTVTSMES--ERAFGGKLNDTYFWLVDLDDYD--IDINL 264
+ ++ T N GK H+V ++S ++A ++ Y W L + + +
Sbjct: 89 DQIMPLEATINVSGKSKKSQLHSVPDIQSITKKAIVDQIQQKYHWRQALPETGPIFAVEV 148
Query: 265 QIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGG 323
I + A + L T SL +R ++ LK T+A +V L S P + +DP+CG G
Sbjct: 149 AIDKDHAMLTLDTTGDSLFKRGYRIDKGAAPLKETMAAALVLLTSWHPDMLLVDPVCGSG 208
Query: 324 TIPVECSL 331
TI +E +L
Sbjct: 209 TILIEAAL 216
>gi|423610089|ref|ZP_17585950.1| hypothetical protein IIM_00804 [Bacillus cereus VD107]
gi|401249406|gb|EJR55712.1| hypothetical protein IIM_00804 [Bacillus cereus VD107]
Length = 379
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R +E LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 149 ATLTIDASGVGLHKRGYRLEQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 208
Query: 330 SL 331
+L
Sbjct: 209 AL 210
>gi|423481546|ref|ZP_17458236.1| hypothetical protein IEQ_01324 [Bacillus cereus BAG6X1-2]
gi|401144754|gb|EJQ52281.1| hypothetical protein IEQ_01324 [Bacillus cereus BAG6X1-2]
Length = 379
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R +E LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 149 ATLTIDASGVGLHKRGYRLEQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 208
Query: 330 SL 331
+L
Sbjct: 209 AL 210
>gi|423600999|ref|ZP_17576999.1| hypothetical protein III_03801 [Bacillus cereus VD078]
gi|401231545|gb|EJR38048.1| hypothetical protein III_03801 [Bacillus cereus VD078]
Length = 379
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R +E LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 149 ATLTIDASGVGLHKRGYRLEQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 208
Query: 330 SL 331
+L
Sbjct: 209 AL 210
>gi|374709237|ref|ZP_09713671.1| hypothetical protein SinuC_03386 [Sporolactobacillus inulinus CASD]
Length = 378
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I + + ++ + + + LHRR N LK T+A M+ L+ P F+DP C
Sbjct: 141 IQVALDKDQVTLSIDTSGDGLHRRGYRRLHNEAPLKETLASAMILLSRWTPDQPFVDPFC 200
Query: 321 GGGTIPVECSL 331
G GT+P+E ++
Sbjct: 201 GSGTLPIEAAM 211
>gi|297181608|gb|ADI17792.1| predicted N6-adenine-specific DNA methylase [uncultured
Sphingobacteriales bacterium HF0130_33B19]
Length = 382
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
V+ ++ D+ INL I + V L + SLH+R +T + +A M+ L+
Sbjct: 134 VNPENPDVSINLHIAKHTCTVSLDSSGESLHKRGYKTDTVTAPMNEVLAAGMILLSDWNK 193
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F DPMCG GTI +E +L
Sbjct: 194 VSDFHDPMCGSGTILIEAAL 213
>gi|150392237|ref|YP_001322286.1| putative RNA methylase [Alkaliphilus metalliredigens QYMF]
gi|149952099|gb|ABR50627.1| putative RNA methylase [Alkaliphilus metalliredigens QYMF]
Length = 379
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 275 LPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
+ T LH+R + N LK T+A +++L+ P V +DP CG GTIP+E +L
Sbjct: 154 MDTTGAGLHKRGYRKLANQAPLKETLAAALIQLSFWNPDRVLIDPFCGSGTIPIEAAL 211
>gi|30261656|ref|NP_844033.1| hypothetical protein BA_1584 [Bacillus anthracis str. Ames]
gi|47526859|ref|YP_018208.1| hypothetical protein GBAA_1584 [Bacillus anthracis str. 'Ames
Ancestor']
gi|47566025|ref|ZP_00237063.1| methyltransferase [Bacillus cereus G9241]
gi|49184485|ref|YP_027737.1| hypothetical protein BAS1468 [Bacillus anthracis str. Sterne]
gi|49477265|ref|YP_035774.1| methyltransferase [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|52143789|ref|YP_083038.1| methyltransferase [Bacillus cereus E33L]
gi|165869460|ref|ZP_02214119.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167633422|ref|ZP_02391747.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|167639118|ref|ZP_02397391.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|170686057|ref|ZP_02877279.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|170706509|ref|ZP_02896969.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|177650611|ref|ZP_02933578.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190568656|ref|ZP_03021561.1| conserved hypothetical protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|196033673|ref|ZP_03101085.1| conserved hypothetical protein [Bacillus cereus W]
gi|196038984|ref|ZP_03106291.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
gi|196046574|ref|ZP_03113798.1| conserved hypothetical protein [Bacillus cereus 03BB108]
gi|206974873|ref|ZP_03235788.1| conserved hypothetical protein [Bacillus cereus H3081.97]
gi|217959142|ref|YP_002337690.1| hypothetical protein BCAH187_A1729 [Bacillus cereus AH187]
gi|218902771|ref|YP_002450605.1| hypothetical protein BCAH820_1654 [Bacillus cereus AH820]
gi|222095289|ref|YP_002529349.1| methyltransferase [Bacillus cereus Q1]
gi|225863523|ref|YP_002748901.1| hypothetical protein BCA_1620 [Bacillus cereus 03BB102]
gi|227815593|ref|YP_002815602.1| hypothetical protein BAMEG_3011 [Bacillus anthracis str. CDC 684]
gi|228932948|ref|ZP_04095813.1| hypothetical protein bthur0009_14190 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|229090623|ref|ZP_04221856.1| hypothetical protein bcere0021_14470 [Bacillus cereus Rock3-42]
gi|229121201|ref|ZP_04250438.1| hypothetical protein bcere0016_15070 [Bacillus cereus 95/8201]
gi|229604882|ref|YP_002866063.1| hypothetical protein BAA_1651 [Bacillus anthracis str. A0248]
gi|254683147|ref|ZP_05147008.1| methyltransferase [Bacillus anthracis str. CNEVA-9066]
gi|254723735|ref|ZP_05185521.1| methyltransferase [Bacillus anthracis str. A1055]
gi|254734496|ref|ZP_05192208.1| methyltransferase [Bacillus anthracis str. Western North America
USA6153]
gi|254740908|ref|ZP_05198596.1| methyltransferase [Bacillus anthracis str. Kruger B]
gi|254755146|ref|ZP_05207180.1| methyltransferase [Bacillus anthracis str. Vollum]
gi|254759683|ref|ZP_05211707.1| methyltransferase [Bacillus anthracis str. Australia 94]
gi|300117412|ref|ZP_07055202.1| methyltransferase [Bacillus cereus SJ1]
gi|301053197|ref|YP_003791408.1| methyltransferase [Bacillus cereus biovar anthracis str. CI]
gi|375283639|ref|YP_005104077.1| hypothetical protein BCN_1544 [Bacillus cereus NC7401]
gi|376265503|ref|YP_005118215.1| putative N6-adenine-specific DNA methylase [Bacillus cereus
F837/76]
gi|384179593|ref|YP_005565355.1| methyltransferase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|421508318|ref|ZP_15955232.1| methyltransferase [Bacillus anthracis str. UR-1]
gi|421638669|ref|ZP_16079264.1| methyltransferase [Bacillus anthracis str. BF1]
gi|423353856|ref|ZP_17331482.1| hypothetical protein IAU_01931 [Bacillus cereus IS075]
gi|423371640|ref|ZP_17348980.1| hypothetical protein IC5_00696 [Bacillus cereus AND1407]
gi|423552606|ref|ZP_17528933.1| hypothetical protein IGW_03237 [Bacillus cereus ISP3191]
gi|423569422|ref|ZP_17545668.1| hypothetical protein II7_02644 [Bacillus cereus MSX-A12]
gi|423576624|ref|ZP_17552743.1| hypothetical protein II9_03845 [Bacillus cereus MSX-D12]
gi|30255884|gb|AAP25519.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
gi|47502007|gb|AAT30683.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|47556942|gb|EAL15272.1| methyltransferase [Bacillus cereus G9241]
gi|49178412|gb|AAT53788.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
gi|49328821|gb|AAT59467.1| methyltransferase [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|51977258|gb|AAU18808.1| methyltransferase [Bacillus cereus E33L]
gi|164714900|gb|EDR20418.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167512908|gb|EDR88281.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|167531460|gb|EDR94138.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|170128607|gb|EDS97474.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|170669754|gb|EDT20495.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|172083755|gb|EDT68815.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190560256|gb|EDV14236.1| conserved hypothetical protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|195994107|gb|EDX58063.1| conserved hypothetical protein [Bacillus cereus W]
gi|196022507|gb|EDX61190.1| conserved hypothetical protein [Bacillus cereus 03BB108]
gi|196030129|gb|EDX68729.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
gi|206746892|gb|EDZ58284.1| conserved hypothetical protein [Bacillus cereus H3081.97]
gi|217067858|gb|ACJ82108.1| conserved hypothetical protein [Bacillus cereus AH187]
gi|218534931|gb|ACK87329.1| conserved hypothetical protein [Bacillus cereus AH820]
gi|221239347|gb|ACM12057.1| methyltransferase [Bacillus cereus Q1]
gi|225785763|gb|ACO25980.1| conserved hypothetical protein [Bacillus cereus 03BB102]
gi|227003594|gb|ACP13337.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684]
gi|228662320|gb|EEL17923.1| hypothetical protein bcere0016_15070 [Bacillus cereus 95/8201]
gi|228692565|gb|EEL46291.1| hypothetical protein bcere0021_14470 [Bacillus cereus Rock3-42]
gi|228826751|gb|EEM72520.1| hypothetical protein bthur0009_14190 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|229269290|gb|ACQ50927.1| conserved hypothetical protein [Bacillus anthracis str. A0248]
gi|298725247|gb|EFI65899.1| methyltransferase [Bacillus cereus SJ1]
gi|300375366|gb|ADK04270.1| methyltransferase [Bacillus cereus biovar anthracis str. CI]
gi|324325677|gb|ADY20937.1| methyltransferase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|358352165|dbj|BAL17337.1| conserved hypothetical protein [Bacillus cereus NC7401]
gi|364511303|gb|AEW54702.1| putative N6-adenine-specific DNA methylase [Bacillus cereus
F837/76]
gi|401088431|gb|EJP96619.1| hypothetical protein IAU_01931 [Bacillus cereus IS075]
gi|401101351|gb|EJQ09341.1| hypothetical protein IC5_00696 [Bacillus cereus AND1407]
gi|401186548|gb|EJQ93636.1| hypothetical protein IGW_03237 [Bacillus cereus ISP3191]
gi|401206677|gb|EJR13464.1| hypothetical protein II7_02644 [Bacillus cereus MSX-A12]
gi|401207620|gb|EJR14399.1| hypothetical protein II9_03845 [Bacillus cereus MSX-D12]
gi|401821568|gb|EJT20724.1| methyltransferase [Bacillus anthracis str. UR-1]
gi|403394196|gb|EJY91437.1| methyltransferase [Bacillus anthracis str. BF1]
Length = 379
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R V+ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 149 ATLTIDASGVGLHKRGYRVDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 208
Query: 330 SL 331
+L
Sbjct: 209 AL 210
>gi|53805090|ref|YP_113222.1| 23S rRNA m(2)G2445 methyltransferase [Methylococcus capsulatus str.
Bath]
gi|81823699|sp|Q60AX5.1|RLMKL_METCA RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|53758851|gb|AAU93142.1| putative methylase [Methylococcus capsulatus str. Bath]
Length = 738
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYN-MVRLASP- 309
V L+ DI IN+ + ++A +GL ++ SLHRR E LK +A ++R P
Sbjct: 133 VRLERPDIRINVHLDADQAVIGLDLSGDSLHRRGYRTEAGPAPLKENLAAAVLIRAGWPD 192
Query: 310 --IPGDVFLDPMCGGGTIPVECSL 331
G +DPMCG T+ +E +L
Sbjct: 193 IAARGGSLIDPMCGSATLLIEGAL 216
>gi|317128918|ref|YP_004095200.1| rRNA (guanine-N(2)-)-methyltransferase [Bacillus cellulosilyticus
DSM 2522]
gi|315473866|gb|ADU30469.1| rRNA (guanine-N(2)-)-methyltransferase [Bacillus cellulosilyticus
DSM 2522]
Length = 378
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 280 TSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
T LH+R N LK T+A M++L + P F+DP CG GT+P+E ++
Sbjct: 158 TGLHKRGYRYLHNEAPLKETLAAAMIKLTNWHPDRPFVDPFCGSGTLPIEAAM 210
>gi|289810517|ref|ZP_06541146.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 330
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|332292758|ref|YP_004431367.1| rRNA (guanine-N(2)-)-methyltransferase [Krokinobacter sp. 4H-3-7-5]
gi|332170844|gb|AEE20099.1| rRNA (guanine-N(2)-)-methyltransferase [Krokinobacter sp. 4H-3-7-5]
Length = 383
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD D+ +N+ I+ N + L + SLH R NI + +A ++ ++
Sbjct: 127 VDTKHPDLRLNVHIQDNWCTLSLDSSGASLHHRGYRTATNIAPINEALAAGLIMMSGWYG 186
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GT+ +E ++
Sbjct: 187 QSDFLDPMCGSGTMCIEAAM 206
>gi|428200797|ref|YP_007079386.1| putative N6-adenine-specific DNA methylase [Pleurocapsa sp. PCC
7327]
gi|427978229|gb|AFY75829.1| putative N6-adenine-specific DNA methylase [Pleurocapsa sp. PCC
7327]
Length = 375
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+++++ D+ IN I + + L + +SLHRR I LK T+A ++ +A P
Sbjct: 131 INIENPDVLINAHIEGDRCLLSLDSSGSSLHRRGYRPAMGIAPLKETLAAALLEIAEWKP 190
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDP+CG G +P+E +L
Sbjct: 191 NIPFLDPLCGSGILPIEAAL 210
>gi|399928170|ref|ZP_10785528.1| rRNA (guanine-N(2)-)-methyltransferase [Myroides injenensis
M09-0166]
Length = 402
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+D D D+ IN+ I+ + V L + SLH R NI + +A M+ ++
Sbjct: 148 IDKDFPDLRINVHIQKDMCTVSLDSSGASLHHRGYRTATNIAPINEVLAAGMLLMSGWDG 207
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GTI E ++
Sbjct: 208 RTDFLDPMCGSGTILTEAAM 227
>gi|448451668|ref|ZP_21592968.1| RNA methylase [Halorubrum litoreum JCM 13561]
gi|445810524|gb|EMA60549.1| RNA methylase [Halorubrum litoreum JCM 13561]
Length = 372
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 68/192 (35%), Gaps = 26/192 (13%)
Query: 228 GKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRY-----NEAYVGLPVTQTSL 282
G V++ +ER GG L D F VDLDD D + ++A VG L
Sbjct: 99 GTAGVSTETAERELGGVLVDRGF-DVDLDDPDHVLRALFAAGPRAEHDAVVGADGGDADL 157
Query: 283 HRRNIVE----------------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIP 326
V F ++ P A LA PG LDPMCG G +P
Sbjct: 158 CALGWVAAEAARDFAPNPTDRPFFQPGSMAPADARAYANLAGAAPGRTLLDPMCGTGGLP 217
Query: 327 VECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC--NVRQLCFKPAC 384
+E L V D K+V + N G + V + L
Sbjct: 218 LEAGLVGADA--VACDAQAKMVRGARENFREYLGAPGTDDSPDWHVARGDATALPVPDDA 275
Query: 385 VDGIVTDLPFGK 396
VDG+ D P+G+
Sbjct: 276 VDGVAFDAPYGR 287
>gi|42780764|ref|NP_978011.1| hypothetical protein BCE_1690 [Bacillus cereus ATCC 10987]
gi|42736684|gb|AAS40619.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
Length = 381
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R V+ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 151 ATLTIDASGVGLHKRGYRVDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 210
Query: 330 SL 331
+L
Sbjct: 211 AL 212
>gi|229084665|ref|ZP_04216932.1| hypothetical protein bcere0022_12990 [Bacillus cereus Rock3-44]
gi|228698621|gb|EEL51339.1| hypothetical protein bcere0022_12990 [Bacillus cereus Rock3-44]
Length = 379
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R V+ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 149 ATLTIDASGVGLHKRGYRVDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 208
Query: 330 SL 331
+L
Sbjct: 209 AL 210
>gi|402552958|ref|YP_006594229.1| methyltransferase [Bacillus cereus FRI-35]
gi|401794168|gb|AFQ08027.1| methyltransferase [Bacillus cereus FRI-35]
Length = 379
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R V+ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 149 ATLTIDASGVGLHKRGYRVDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 208
Query: 330 SL 331
+L
Sbjct: 209 AL 210
>gi|423606637|ref|ZP_17582530.1| hypothetical protein IIK_03218 [Bacillus cereus VD102]
gi|401241462|gb|EJR47850.1| hypothetical protein IIK_03218 [Bacillus cereus VD102]
Length = 379
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R V+ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 149 ATLTIDASGVGLHKRGYRVDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 208
Query: 330 SL 331
+L
Sbjct: 209 AL 210
>gi|302876677|ref|YP_003845310.1| rRNA (guanine-N(2)-)-methyltransferase [Clostridium cellulovorans
743B]
gi|307687352|ref|ZP_07629798.1| rRNA (guanine-N(2)-)-methyltransferase [Clostridium cellulovorans
743B]
gi|302579534|gb|ADL53546.1| rRNA (guanine-N(2)-)-methyltransferase [Clostridium cellulovorans
743B]
Length = 374
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 273 VGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
V L + +LH+R E N+ LK T+A ++ ++ P F+DP CG GTI +E ++
Sbjct: 151 VLLDTSGVALHKRGYREDANMAPLKETMAAALINISGWTPDKPFMDPFCGSGTIAIEAAM 210
>gi|228938770|ref|ZP_04101372.1| Site-specific DNA-methyltransferase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228971653|ref|ZP_04132275.1| Site-specific DNA-methyltransferase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978262|ref|ZP_04138639.1| Site-specific DNA-methyltransferase [Bacillus thuringiensis Bt407]
gi|228781279|gb|EEM29480.1| Site-specific DNA-methyltransferase [Bacillus thuringiensis Bt407]
gi|228788066|gb|EEM36023.1| Site-specific DNA-methyltransferase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228820893|gb|EEM66916.1| Site-specific DNA-methyltransferase [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 381
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 57/205 (27%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 151 ATLTIDASGVGLHKRGYRMDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 210
Query: 330 SL-------------------------------------SYPHTFFVCG-DINEKLVLKT 351
+L +Y + G DI+ +++
Sbjct: 211 ALIGQNIAPGFNRGFASDEWGWVGKQNWREARQEAEDLANYDQRLQIIGSDIDHRMIRVA 270
Query: 352 QANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG----IVTDLPFGKRVGSKSNNFLL 407
Q N E+ +S L+ +Q+ K +VT+ P+G+R+ K+ L
Sbjct: 271 QDNA--------EEVGLSDLI-TFKQMQVKDFTTKEDYGYVVTNPPYGERLSEKALVEQL 321
Query: 408 YRLFLIEIGKIVRP-QIGRAILLTS 431
Y+ E+G++ RP A +LTS
Sbjct: 322 YK----EMGQVFRPLDTWSAYVLTS 342
>gi|384185568|ref|YP_005571464.1| methyltransferase [Bacillus thuringiensis serovar chinensis CT-43]
gi|410673860|ref|YP_006926231.1| putative RNA methyltransferase YpsC [Bacillus thuringiensis Bt407]
gi|452197885|ref|YP_007477966.1| putative N6-adenine-specific DNA methylase [Bacillus thuringiensis
serovar thuringiensis str. IS5056]
gi|326939277|gb|AEA15173.1| methyltransferase [Bacillus thuringiensis serovar chinensis CT-43]
gi|409172989|gb|AFV17294.1| putative RNA methyltransferase YpsC [Bacillus thuringiensis Bt407]
gi|452103278|gb|AGG00218.1| putative N6-adenine-specific DNA methylase [Bacillus thuringiensis
serovar thuringiensis str. IS5056]
Length = 379
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 57/205 (27%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 149 ATLTIDASGVGLHKRGYRMDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 208
Query: 330 SL-------------------------------------SYPHTFFVCG-DINEKLVLKT 351
+L +Y + G DI+ +++
Sbjct: 209 ALIGQNIAPGFNRGFASDEWGWVGKQNWREARQEAEDLANYDQRLQIIGSDIDHRMIRVA 268
Query: 352 QANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG----IVTDLPFGKRVGSKSNNFLL 407
Q N E+ +S L+ +Q+ K +VT+ P+G+R+ K+ L
Sbjct: 269 QDNA--------EEVGLSDLI-TFKQMQVKDFTTKEDYGYVVTNPPYGERLSEKALVEQL 319
Query: 408 YRLFLIEIGKIVRP-QIGRAILLTS 431
Y+ E+G++ RP A +LTS
Sbjct: 320 YK----EMGQVFRPLDTWSAYVLTS 340
>gi|269138613|ref|YP_003295313.1| RNA methylase [Edwardsiella tarda EIB202]
gi|267984273|gb|ACY84102.1| putative RNA methylase [Edwardsiella tarda EIB202]
Length = 705
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 257 DYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVF 315
D DI I++ ++ A V L ++ LH+R + LK T+A +V + PG
Sbjct: 134 DPDIRISVYLQRETAIVSLDLSGDGLHQRGYRDLTGQAPLKETLAAAVVLRSGWQPGTPM 193
Query: 316 LDPMCGGGTIPVECSL 331
+DPMCG GT+ +E ++
Sbjct: 194 VDPMCGSGTLLIEAAM 209
>gi|271964263|ref|YP_003338459.1| thiamine biosynthesis protein ThiI [Streptosporangium roseum DSM
43021]
gi|270507438|gb|ACZ85716.1| thiamine biosynthesis protein ThiI [Streptosporangium roseum DSM
43021]
Length = 400
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 13/98 (13%)
Query: 218 LKFRVTCNRVGKH-TVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYV--- 273
+ F V R K +TSME +R+ GG+LND Y VDL + ++ +++++ +E +V
Sbjct: 116 VSFAVRSRRRDKRFPLTSMEIDRSVGGELNDIYGLPVDLKNPELVVSIEVDRDEVFVFTG 175
Query: 274 ------GLPVTQTSLHRRNIVEFNITTLKPTIAYNMVR 305
GLPV + R +V + P AY M+R
Sbjct: 176 GTPGQGGLPVGTSG---RGLVLMSGGIDSPVAAYRMMR 210
>gi|224025584|ref|ZP_03643950.1| hypothetical protein BACCOPRO_02324 [Bacteroides coprophilus DSM
18228]
gi|224018820|gb|EEF76818.1| hypothetical protein BACCOPRO_02324 [Bacteroides coprophilus DSM
18228]
Length = 504
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNI-TTLKPTIAYNMVRLASPIP 311
V + + D+ IN+ I ++ + L + SLHRR + + L +A M+ L +
Sbjct: 133 VRISNPDLAINIHIAEDQCTLSLDSSGESLHRRGYRQEQVEAPLNEVLAAGMI-LMTGWR 191
Query: 312 GDV-FLDPMCGGGTIPVECSL 331
G+ +DPMCG GTIP+E +L
Sbjct: 192 GECDLIDPMCGSGTIPIEAAL 212
>gi|445152166|ref|ZP_21390709.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|444854587|gb|ELX79647.1| 23S rRNA m(2)G2445 methyltransferase [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
Length = 702
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G DPMCG GT+ +E ++
Sbjct: 190 GTPLFDPMCGSGTLLIEAAM 209
>gi|329766161|ref|ZP_08257720.1| putative RNA methylase [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329137432|gb|EGG41709.1| putative RNA methylase [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 315
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 75/183 (40%), Gaps = 10/183 (5%)
Query: 236 ESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTL 295
E ER+ G + V L + DI I L E + G +R ++ + L
Sbjct: 103 ELERSMGDMITKFSKAQVSLKNPDITIYLIFTNEENFFGFSKRFEKQNRPIKIKKHPHEL 162
Query: 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANV 355
+ +M+ L G+V DP CG GT +E H + D +EK+ ++ N+
Sbjct: 163 DWKLTRSMINLIGLKEGEVVCDPFCGTGTTLLEAESMGIHA--IGLDFDEKMFKISKENL 220
Query: 356 LHNSGNLNRELKVSPLV-CNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIE 414
N N S ++ + QL DGIVTDLP+G S N L + F+
Sbjct: 221 DANGYN-------SKIIRGDFSQLTKMIDEFDGIVTDLPYGTASKSSENPEELMKKFVAT 273
Query: 415 IGK 417
+ K
Sbjct: 274 LPK 276
>gi|387867313|ref|YP_005698782.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Edwardsiella tarda
FL6-60]
gi|304558626|gb|ADM41290.1| 23S rRNA (guanine-N-2-) -methyltransferase RlmL [Edwardsiella tarda
FL6-60]
Length = 663
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 257 DYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVF 315
D DI I++ ++ A V L ++ LH+R + LK T+A +V + PG
Sbjct: 92 DPDIRISVYLQRETAIVSLDLSGDGLHQRGYRDLTGQAPLKETLAAAVVLRSGWQPGTPM 151
Query: 316 LDPMCGGGTIPVECSL 331
+DPMCG GT+ +E ++
Sbjct: 152 VDPMCGSGTLLIEAAM 167
>gi|86160428|ref|YP_467213.1| RNA methylase [Anaeromyxobacter dehalogenans 2CP-C]
gi|85776939|gb|ABC83776.1| putative RNA methylase [Anaeromyxobacter dehalogenans 2CP-C]
Length = 387
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNI-TTLKPTIAYNMVRLASPIP 311
VD D D+ I L + +EA + L + LHRR LK T+A ++ L P
Sbjct: 129 VDPKDPDVRIVLHLARDEATLSLDLAGAPLHRRGYRAVTTEAPLKETLAAAVLLLGGVDP 188
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F DPM G GT+ +E +L
Sbjct: 189 ALPFADPMAGSGTLAIEHAL 208
>gi|82621715|gb|ABB86531.1| putative N6-adenine-specific DNA methylase [uncultured
Bacteroidetes bacterium 'SBI2-18 P41A3']
Length = 387
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VDL+D DI IN+ + N + L + L++R + NI + +A +V L++
Sbjct: 133 VDLEDPDIKINIHLSQNNLTISLDASGKPLNQRGYRSQTNIAPINEVLAAGIVILSNWDC 192
Query: 312 GDVFLDPMCGGGTIPVECSL---SYP 334
LDPMCG GT +E ++ +YP
Sbjct: 193 ESDLLDPMCGSGTFLIEAAMYATNYP 218
>gi|258514261|ref|YP_003190483.1| putative RNA methylase [Desulfotomaculum acetoxidans DSM 771]
gi|257777966|gb|ACV61860.1| putative RNA methylase [Desulfotomaculum acetoxidans DSM 771]
Length = 384
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R + + + LK T+A M+ L+ P V LDP CG GT+P+E
Sbjct: 149 ATLTIDTSGAGLHKRGYRKLSSSAPLKETLAAAMILLSRWRPDRVLLDPFCGSGTLPIEA 208
Query: 330 SL 331
+L
Sbjct: 209 AL 210
>gi|220919233|ref|YP_002494537.1| RNA methylase [Anaeromyxobacter dehalogenans 2CP-1]
gi|219957087|gb|ACL67471.1| putative RNA methylase [Anaeromyxobacter dehalogenans 2CP-1]
Length = 387
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNI-TTLKPTIAYNMVRLASPIP 311
VD D D+ I L + +EA + L + LHRR LK T+A ++ L P
Sbjct: 129 VDPKDPDVRIVLHLARDEATLSLDLAGAPLHRRGYRAVTTEAPLKETLAAAVLLLGGVDP 188
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F DPM G GT+ +E +L
Sbjct: 189 ALPFADPMAGSGTLAIEHAL 208
>gi|444352295|ref|YP_007388439.1| 23S rRNA (guanine-N-2-)-methyltransferase rlmL [Enterobacter
aerogenes EA1509E]
gi|443903125|emb|CCG30899.1| 23S rRNA (guanine-N-2-)-methyltransferase rlmL EC 2.1.1.-)
[Enterobacter aerogenes EA1509E]
Length = 701
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+ + A++ L ++ LH R + + +K +A +V + +
Sbjct: 130 VDRENPDLRINVWLNKETAHISLDLSGEGLHLRGYRDGTGMAPIKENLAAAIVMRSGWVA 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|336249543|ref|YP_004593253.1| 23S rRNA m(2)G2445 methyltransferase [Enterobacter aerogenes KCTC
2190]
gi|334735599|gb|AEG97974.1| 23S rRNA m(2)G2445 methyltransferase [Enterobacter aerogenes KCTC
2190]
Length = 701
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+ + A++ L ++ LH R + + +K +A +V + +
Sbjct: 130 VDRENPDLRINVWLNKETAHISLDLSGEGLHLRGYRDGTGMAPIKENLAAAIVMRSGWVA 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|118580770|ref|YP_902020.1| putative RNA methylase [Pelobacter propionicus DSM 2379]
gi|118503480|gb|ABK99962.1| putative RNA methylase [Pelobacter propionicus DSM 2379]
Length = 393
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD D+ +N+ + N V L + +L RR +E N L+ T+A ++ L
Sbjct: 150 VDTASPDVRVNIHLVKNVCTVSLDSSGDALDRRGYRLERNEAPLRETLAAAIIALTG-WD 208
Query: 312 GDVFL-DPMCGGGTIPVECSL 331
G+V L DPMCG GTIP+E +L
Sbjct: 209 GNVALADPMCGSGTIPIEAAL 229
>gi|197124509|ref|YP_002136460.1| RNA methylase [Anaeromyxobacter sp. K]
gi|196174358|gb|ACG75331.1| putative RNA methylase [Anaeromyxobacter sp. K]
Length = 387
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNI-TTLKPTIAYNMVRLASPIP 311
VD D D+ I L + +EA + L + LHRR LK T+A ++ L P
Sbjct: 129 VDPKDPDVRIVLHLARDEATLSLDLAGAPLHRRGYRAVTTEAPLKETLAAAVLLLGGVDP 188
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F DPM G GT+ +E +L
Sbjct: 189 ALPFADPMAGSGTLAIEHAL 208
>gi|152975082|ref|YP_001374599.1| putative RNA methylase [Bacillus cytotoxicus NVH 391-98]
gi|152023834|gb|ABS21604.1| putative RNA methylase [Bacillus cytotoxicus NVH 391-98]
Length = 379
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R V+ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 149 ATLTIDTSGVGLHKRGYRVDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 208
Query: 330 SL 331
+L
Sbjct: 209 AL 210
>gi|410692674|ref|YP_003623295.1| putative RNA methylase [Thiomonas sp. 3As]
gi|294339098|emb|CAZ87452.1| putative RNA methylase [Thiomonas sp. 3As]
Length = 416
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 239 RAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKP 297
RA G+ D VD D+ I+L +R +A + L + L +R E LK
Sbjct: 149 RALTGERPD-----VDTAHPDVRIHLHLREADALLYLDTSGEPLFKRGWRSEHGAAPLKE 203
Query: 298 TIAYNMVRLASPIPGDVFLDPMCGGGTIPVE 328
+A +++L+ P DV DP+CG GT+ +E
Sbjct: 204 HLAAGLLKLSGWTPDDVLFDPLCGSGTLVIE 234
>gi|254283517|ref|ZP_04958485.1| methylase [gamma proteobacterium NOR51-B]
gi|219679720|gb|EED36069.1| methylase [gamma proteobacterium NOR51-B]
Length = 736
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 13/128 (10%)
Query: 209 NFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRY 268
+F+ +++ + R V ++ + R G + N VDL D+ +N+++
Sbjct: 96 DFSGRSDDIRNTQFGAQRCKDAVVDAIRARR--GARPN------VDLQSPDLRLNVRLHR 147
Query: 269 NEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYN-MVRLASP---IPGDVFLDPMCGGG 323
VG+ ++ TSLHRR ++ LK +A ++R + P G +DPMCG G
Sbjct: 148 GHVSVGIDLSGTSLHRRGYRLDGGKAPLKENLAAAVLMRCSWPELAAQGWPLIDPMCGSG 207
Query: 324 TIPVECSL 331
T+ +E +L
Sbjct: 208 TLLLEAAL 215
>gi|153003286|ref|YP_001377611.1| putative RNA methylase [Anaeromyxobacter sp. Fw109-5]
gi|152026859|gb|ABS24627.1| putative RNA methylase [Anaeromyxobacter sp. Fw109-5]
Length = 382
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFN-ITTLKPTIAYNMVRLASPIP 311
VD D D+ + L + +EA + L + LHRR + + LK T+A ++ L P
Sbjct: 129 VDPKDPDVRVVLHLARDEAALSLDLAGEPLHRRGYRGASTVAPLKETLAAAILALGGVEP 188
Query: 312 GDVFLDPMCGGGTIPVE 328
F+DPM G GT+ +E
Sbjct: 189 EAPFVDPMAGSGTLAIE 205
>gi|380693089|ref|ZP_09857948.1| putative N6-adenine-specific DNA methylase [Bacteroides faecis
MAJ27]
Length = 505
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNI-TTLKPTIAYNMVRLASPIP 311
V +++ D+ +N+ I + + L + SLHRR + + L +A MV L +
Sbjct: 133 VRINNPDVLLNIHIAHTTCTLSLDSSGESLHRRGYRQEQVEAPLNEVLAAGMV-LMTGWR 191
Query: 312 GDV-FLDPMCGGGTIPVECSL 331
G+ +DPMCG GTIPVE +L
Sbjct: 192 GECDLIDPMCGSGTIPVEAAL 212
>gi|418748071|ref|ZP_13304363.1| RNA methylase, PF01170 family [Leptospira licerasiae str. MMD4847]
gi|404275140|gb|EJZ42454.1| RNA methylase, PF01170 family [Leptospira licerasiae str. MMD4847]
Length = 321
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 30/186 (16%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRR-NIVEFNITTLKPTIAYNMVRLASPIP 311
D ++ ++ L+ R N+ + L + L RR + E L+ T+A ++R + P
Sbjct: 82 ADREEPEVLFYLRSRMNQVKLFLALHAQPLQRRGHGREGGEAPLRETLAQALLRFSGWKP 141
Query: 312 GDVFLDPMCGGGTIPVECSLS-----------------YPHTFFVCG---DINEKLVLKT 351
G+ DP CG GT+ +E +L + F C + + K +L
Sbjct: 142 GEALYDPFCGSGTLLIEAALRMRNGGWVNYKSLSRSSIFTRLFGPCKAKEEWDSKEILLF 201
Query: 352 QANVLHNSGNL----NRELKVSPL----VCNVRQLCFKPACVDG-IVTDLPFGKRVGSKS 402
+++ ++ L +E V+ L V + + P +G IVT+ P+G R+G K
Sbjct: 202 GSDISEDAIELAKKNAKEAGVADLIRWKVASAEEQDASPGFKEGKIVTNPPYGVRLGDKE 261
Query: 403 NNFLLY 408
+ LY
Sbjct: 262 SVSELY 267
>gi|433462937|ref|ZP_20420505.1| hypothetical protein D479_15117 [Halobacillus sp. BAB-2008]
gi|432188074|gb|ELK45292.1| hypothetical protein D479_15117 [Halobacillus sp. BAB-2008]
Length = 378
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 57/212 (26%)
Query: 264 LQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGG 322
+ I +E + L + + LH+R LK T+A +V++ + P F+DP CG
Sbjct: 144 VAIHKDEVLLTLDTSGSGLHKRGYRAGQGEAPLKETLAAALVQITNWHPDKPFVDPFCGS 203
Query: 323 GTIPVECSL-------------------------------------SYPHTFFVCG-DIN 344
GTI +E +L +Y + G DI+
Sbjct: 204 GTIAIEAALIGQNIAPGFNREFASEGWDFIPQKAWDDAFQEAEEAANYDQPLSITGSDID 263
Query: 345 EKLVLKTQANVLHNS-GNL--NRELKVSPLVCNVRQLCFKPACVDG-IVTDLPFGKRVGS 400
K++ + N + G+L +++++S L P DG IV++ P+G+R+G
Sbjct: 264 PKMIDIAKENAMEAGLGDLITWKQMQMSDL---------SPKQEDGYIVSNPPYGERMGE 314
Query: 401 KSNNFLLYRLFLIEIGKIVRPQIGRAI-LLTS 431
K +YR ++G I+R ++ +LTS
Sbjct: 315 KEQVEQMYR----DLGSIMRDHPSWSVYILTS 342
>gi|365157619|ref|ZP_09353871.1| hypothetical protein HMPREF1015_00031 [Bacillus smithii 7_3_47FAA]
gi|363623144|gb|EHL74270.1| hypothetical protein HMPREF1015_00031 [Bacillus smithii 7_3_47FAA]
Length = 382
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I + I +E + L + + LH+R LK T+A +V L + P F+DP C
Sbjct: 140 IEVAIHKDEVELLLDTSGSGLHKRGYRAGQGEAPLKETLAAALVLLTNWTPDRPFIDPFC 199
Query: 321 GGGTIPVECSL 331
G GTIP+E +L
Sbjct: 200 GSGTIPIEAAL 210
>gi|285018743|ref|YP_003376454.1| RNA methylase [Xanthomonas albilineans GPE PC73]
gi|283473961|emb|CBA16462.1| putative rna methylase protein [Xanthomonas albilineans GPE PC73]
Length = 726
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIP 311
VD++ D+ +NL +R A V + + SLHRR + N LK +A ++ L P
Sbjct: 129 VDVEHPDLRLNLSLRKGRATVSVDLGGGSLHRRGWRQAQNEAPLKENLAAALL-LRGQWP 187
Query: 312 -----GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E +L
Sbjct: 188 ALYAQGGCLLDPMCGSGTLLIEGAL 212
>gi|325299364|ref|YP_004259281.1| rRNA (guanine-N(2)-)-methyltransferase [Bacteroides salanitronis
DSM 18170]
gi|324318917|gb|ADY36808.1| rRNA (guanine-N(2)-)-methyltransferase [Bacteroides salanitronis
DSM 18170]
Length = 518
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNI-TTLKPTIAYNMVRLASPIP 311
V +++ D+ +N+ I ++ + L + SLHRR + + L +A M+ L +
Sbjct: 133 VRINNPDLTLNIHIAEDQCTLSLDSSGESLHRRGYRQEQVEAPLNEVLAAGMI-LMTGWR 191
Query: 312 GDV-FLDPMCGGGTIPVECSL 331
G+ +DPMCG GTIP+E +L
Sbjct: 192 GECDLIDPMCGSGTIPIEAAL 212
>gi|372223451|ref|ZP_09501872.1| putative N6-adenine-specific DNA methylase [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 387
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD + + IN+ I N+ V L + +SLH+R VE NI + +A ++ L S
Sbjct: 133 VDSQNASVRINIHIYENQCTVSLDSSGSSLHQRGYKVETNIAPINEVLAAGLL-LQSGWD 191
Query: 312 GDV-FLDPMCGGGTIPVECSL 331
G LDPMCG GT +E ++
Sbjct: 192 GLTNLLDPMCGSGTFLIEAAM 212
>gi|212692405|ref|ZP_03300533.1| hypothetical protein BACDOR_01901 [Bacteroides dorei DSM 17855]
gi|237711399|ref|ZP_04541880.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|265752803|ref|ZP_06088372.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|423230698|ref|ZP_17217102.1| hypothetical protein HMPREF1063_02922 [Bacteroides dorei
CL02T00C15]
gi|423240678|ref|ZP_17221792.1| hypothetical protein HMPREF1065_02415 [Bacteroides dorei
CL03T12C01]
gi|423244409|ref|ZP_17225484.1| hypothetical protein HMPREF1064_01690 [Bacteroides dorei
CL02T12C06]
gi|212664984|gb|EEB25556.1| THUMP domain protein [Bacteroides dorei DSM 17855]
gi|229454094|gb|EEO59815.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263235989|gb|EEZ21484.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|392630348|gb|EIY24341.1| hypothetical protein HMPREF1063_02922 [Bacteroides dorei
CL02T00C15]
gi|392641983|gb|EIY35755.1| hypothetical protein HMPREF1064_01690 [Bacteroides dorei
CL02T12C06]
gi|392643640|gb|EIY37389.1| hypothetical protein HMPREF1065_02415 [Bacteroides dorei
CL03T12C01]
Length = 482
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
V ++ D+ +N+ I ++ + L + SLHRR + + L +A M+ L +
Sbjct: 133 VRINHPDVALNIHIAEDKCTLSLDSSGESLHRRGYRQEAVEAPLNEVLAAGMI-LMTGWK 191
Query: 312 GDV-FLDPMCGGGTIPVECSL 331
G+ +DPMCG GTIP+E +L
Sbjct: 192 GECDLIDPMCGSGTIPIEAAL 212
>gi|340622718|ref|YP_004741170.1| 23S rRNA m2G2445 methyltransferase [Capnocytophaga canimorsus Cc5]
gi|339902984|gb|AEK24063.1| 23S rRNA m2G2445 methyltransferase [Capnocytophaga canimorsus Cc5]
Length = 385
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD+ D+ I++ I+ N+ + L + SLH R NI + +A M+ ++
Sbjct: 133 VDVLHPDLQIHIHIQKNDVIISLDSSGESLHHRGYRSATNIAPINEVLAAGMLMMSGWEG 192
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GT+ +E ++
Sbjct: 193 QCDFLDPMCGSGTLLIEAAM 212
>gi|325921114|ref|ZP_08182985.1| 23S rRNA m(2)G-2445 methyltransferase [Xanthomonas gardneri ATCC
19865]
gi|325548386|gb|EGD19369.1| 23S rRNA m(2)G-2445 methyltransferase [Xanthomonas gardneri ATCC
19865]
Length = 711
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYN-MVRLASP- 309
VDL+ D+ +NL +R A + + + LHRR + N LK +A ++R P
Sbjct: 129 VDLESPDLRLNLSLRKGRATISVDLGGGPLHRRGWRMAQNEAPLKENLAAAVLLRAGWPR 188
Query: 310 --IPGDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E +L
Sbjct: 189 AYAEGGGLLDPMCGSGTLLIEGAL 212
>gi|448241496|ref|YP_007405549.1| 23S rRNA mG2445 methyltransferase, SAM-dependent [Serratia
marcescens WW4]
gi|445211860|gb|AGE17530.1| 23S rRNA mG2445 methyltransferase, SAM-dependent [Serratia
marcescens WW4]
Length = 720
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ ++ + A V L ++ LH+R + LK +A +V + PG LD
Sbjct: 148 DIRVNVFLQRDMASVALDLSGEGLHQRGYRDLTGQAPLKENLAAAIVLRSGWQPGTPMLD 207
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+ +E ++
Sbjct: 208 PMCGSGTLLIEAAM 221
>gi|453066816|gb|EMF07740.1| 23S rRNA m(2)G2445 methyltransferase [Serratia marcescens VGH107]
Length = 708
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ ++ + A V L ++ LH+R + LK +A +V + PG LD
Sbjct: 136 DIRVNVFLQRDMASVALDLSGEGLHQRGYRDLTGQAPLKENLAAAIVLRSGWQPGTPMLD 195
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+ +E ++
Sbjct: 196 PMCGSGTLLIEAAM 209
>gi|417332780|ref|ZP_12116556.1| 23S rRNA-methyltransferase RlmL [Salmonella enterica subsp.
enterica serovar Alachua str. R6-377]
gi|353580692|gb|EHC41854.1| 23S rRNA-methyltransferase RlmL [Salmonella enterica subsp.
enterica serovar Alachua str. R6-377]
Length = 610
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
V+ + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 38 VNRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 97
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 98 GTPLLDPMCGSGTLLIEAAM 117
>gi|335357355|ref|ZP_08549225.1| hypothetical protein LaniK3_05053 [Lactobacillus animalis KCTC
3501]
Length = 378
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 101/251 (40%), Gaps = 61/251 (24%)
Query: 230 HTVTSMES--ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYV--GLPVTQTSLHRR 285
H V S+++ ++A KL+ Y L + L++ N+ V L T +SL +R
Sbjct: 104 HNVPSVQAIVKKAIVEKLSSVYHRRSFLPETGAKYPLEVALNKDKVLLTLDTTGSSLFKR 163
Query: 286 NI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL------------- 331
V LK +A +V LA P F+DP+CG GT+P+E ++
Sbjct: 164 GYRVGKGGAPLKENMAAALVLLAHWYPEKPFVDPVCGSGTLPIEAAMIGHNIAPGFNRDF 223
Query: 332 ------------------------SYPHTFFVCG-DINEKLVLKTQANVLHNSGNLNREL 366
+Y +CG DI+ K++ + N + L+ +
Sbjct: 224 VCETWDWMPAGLSEELRAKAEQEANYDIELDICGYDIDGKMIEIAKQNAME--AGLSHSI 281
Query: 367 KVSPLVCNVRQLCFKPACVDG----IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRP- 421
K +QL K D IV + P+G+R+ ++ LY+ E+G + RP
Sbjct: 282 K-------FKQLAVKDFKTDKEYGVIVANPPYGERLSDEAGVHKLYQ----EMGDLYRPL 330
Query: 422 QIGRAILLTSD 432
+LTSD
Sbjct: 331 TTWSKYILTSD 341
>gi|238062680|ref|ZP_04607389.1| hypothetical protein MCAG_03646 [Micromonospora sp. ATCC 39149]
gi|237884491|gb|EEP73319.1| hypothetical protein MCAG_03646 [Micromonospora sp. ATCC 39149]
Length = 353
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 14/168 (8%)
Query: 260 IDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNIT-TLKPTIAYNMVRLASPIPGDVFLDP 318
+ + + + +A + + V LHRR + TL P +A + LA PG + DP
Sbjct: 152 LSLRVTVEGTQATLAVRVADRPLHRRAYKRSSTPGTLHPPLAAALAWLAGIRPGMLVADP 211
Query: 319 MCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378
CG GTIPVE + P D + + V AN + +V+ V + +L
Sbjct: 212 CCGTGTIPVEAAGLAPGAVLFGSDHDPETVGAAVANSAASGA------RVTWAVADAGRL 265
Query: 379 CFKPACVDGIVTDLPFGKRV-------GSKSNNFLLYRLFLIEIGKIV 419
+ VD +V++ P+ ++V G F R ++ G+ V
Sbjct: 266 PLRTGRVDRVVSNPPWDRQVQARGVLAGDSGRLFAELRRVTVDGGRAV 313
>gi|343497984|ref|ZP_08736034.1| 23S rRNA m(2)G2445 methyltransferase [Vibrio nigripulchritudo ATCC
27043]
gi|342815683|gb|EGU50595.1| 23S rRNA m(2)G2445 methyltransferase [Vibrio nigripulchritudo ATCC
27043]
Length = 708
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 98/249 (39%), Gaps = 54/249 (21%)
Query: 256 DDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDV 314
D D+ +++++ ++A VG + + LH R E L+ T+A +V G
Sbjct: 133 DQPDLRVHVRLFKDKALVGFDMVGSGLHHRGYRTESGRAPLRETLAAAIVSRCGWEQGMP 192
Query: 315 FLDPMCGGGTIPVECSLSYP------HTFFVCGDINEKL------VLKTQANVLHNSGNL 362
LDPMCG GT+ +E ++ H + C + + +K++ANV G
Sbjct: 193 LLDPMCGSGTLLIEAAMIAANMAPGVHRKYWCFESLKDFEPETWAEVKSEANVQARRGTK 252
Query: 363 NRELKVSPLVCNVRQL-------------------------CFKPACVDG--IVTDLPFG 395
E K + R L +P D IV++ P+G
Sbjct: 253 KVESKFYGFDNDTRVLKTARENAKRAGVESLIHFEKGDAAQIKRPGSFDNGVIVSNPPYG 312
Query: 396 KRVGSKSNNFLLYRLFLIEIGKIVRPQIG---RAILLTSDRKHLIQALHITSALWKCRKQ 452
+R+G+ LY F G ++ + G +I +SD L+ L + + KQ
Sbjct: 313 ERLGTHPGLIALYTAF----GGQLKTEFGGCKASIFSSSD--ELLSCLRM-----RADKQ 361
Query: 453 IKINMSGMK 461
K+N ++
Sbjct: 362 FKLNNGALQ 370
>gi|336124255|ref|YP_004566303.1| methyltransferase [Vibrio anguillarum 775]
gi|335341978|gb|AEH33261.1| Methyltransferase [Vibrio anguillarum 775]
Length = 709
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 104/251 (41%), Gaps = 54/251 (21%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+D D D+ +++++ ++A +G+ + LH+R E L+ T+A ++ +
Sbjct: 130 IDKDHADLRVHVRLHKDKAILGIDMVGGGLHQRGYRTEAGRAPLRETLAAAIILRSGWSE 189
Query: 312 GDVFLDPMCGGGTIPVEC---------SLSYPH-TFFVCGDINEKLV--LKTQAN----- 354
LDPMCG GT+ +E SL P +F D + +L +K++AN
Sbjct: 190 AKPLLDPMCGSGTLLIEAAMIAAGMAPSLKRPKWSFEALEDFDAELWAQIKSEANVQARR 249
Query: 355 -----------------VLHNSGNLNRELKVSPLVC---NVRQLCFKPACV-DGIV-TDL 392
VL + + R V L+ L +P DG+V +
Sbjct: 250 GVKKVDCKFFGFDNDARVLQTAKDNARRAGVEELITFQLGDAALIKRPEEFEDGVVICNP 309
Query: 393 PFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIG---RAILLTSDRKHLIQALHITSALWKC 449
P+G+R+G+ LY F G ++ + G +I +SD L+ L + +
Sbjct: 310 PYGERLGTHPGLIALYTAF----GGQLKAEFGGCQASIFSSSD--ELLSCLRM-----RA 358
Query: 450 RKQIKINMSGM 460
KQ K+N +
Sbjct: 359 EKQFKLNNGAL 369
>gi|325953669|ref|YP_004237329.1| rRNA (guanine-N(2)-)-methyltransferase [Weeksella virosa DSM 16922]
gi|323436287|gb|ADX66751.1| rRNA (guanine-N(2)-)-methyltransferase [Weeksella virosa DSM 16922]
Length = 383
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD + DI NL I +++ + L + SLH+R E + +A ++++A
Sbjct: 132 VDRYNADIRFNLHISHDKVTLSLDSSGESLHKRGYRTETGPAPINEVLAAGLLKIAGWDG 191
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GT+ +E ++
Sbjct: 192 KGNFLDPMCGSGTMLLEAAM 211
>gi|448483666|ref|ZP_21605813.1| RNA methylase [Halorubrum arcis JCM 13916]
gi|445820681|gb|EMA70490.1| RNA methylase [Halorubrum arcis JCM 13916]
Length = 372
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 8/146 (5%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F ++ P A LA PG LDPMCG G +P+E L V D K+V
Sbjct: 181 FQPGSMAPADARAYANLAGAAPGRTLLDPMCGTGGLPLEAGLVGADA--VACDAQAKMVR 238
Query: 350 KTQANVLHNSGNLNRELKVSPLVC--NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLL 407
+ N G + + V + L VDG+ D P+G++ SK L
Sbjct: 239 GARENFREYLGAPDTDDSPDWHVARGDATALPVPDDAVDGVAFDAPYGRQ--SKIARHEL 296
Query: 408 YRLFLIEIGKIVRPQIGRAILLTSDR 433
L + + R + +L +DR
Sbjct: 297 ADLVAGALAEAAR--VAPRAVLVADR 320
>gi|87125321|ref|ZP_01081167.1| putative RNA methylase family protein [Synechococcus sp. RS9917]
gi|86167090|gb|EAQ68351.1| putative RNA methylase family protein [Synechococcus sp. RS9917]
Length = 369
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+DL++ D+ ++L + +A + L SLHRR LK +A ++RL
Sbjct: 125 IDLEEPDLHLHLHLGRGDAVLSLDGCGGSLHRRGYRAAMGAAPLKENLAAGLIRLTGWDG 184
Query: 312 GDVFLDPMCGGGTIPVECS 330
+DP+CG GT+ +E +
Sbjct: 185 TTPLVDPLCGSGTLLIEAA 203
>gi|448514241|ref|ZP_21616993.1| RNA methylase [Halorubrum distributum JCM 9100]
gi|445692909|gb|ELZ45078.1| RNA methylase [Halorubrum distributum JCM 9100]
Length = 363
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 42/109 (38%), Gaps = 4/109 (3%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F ++ P A LA PG LDPMCG G +P+E L V D K+V
Sbjct: 172 FQPGSMAPADARAYANLAGAAPGRTLLDPMCGTGGLPLEAGLVGADA--VACDAQAKMVR 229
Query: 350 KTQANVLHNSGNLNRELKVSPLVC--NVRQLCFKPACVDGIVTDLPFGK 396
+ N G + V + L VDG+ D P+G+
Sbjct: 230 GARENFREYLGAPGTDDSPDWHVARGDATALPVPDDAVDGVAFDAPYGR 278
>gi|260663045|ref|ZP_05863938.1| N6-adenine-specific DNA methylase [Lactobacillus fermentum
28-3-CHN]
gi|260552666|gb|EEX25666.1| N6-adenine-specific DNA methylase [Lactobacillus fermentum
28-3-CHN]
Length = 384
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 230 HTVTSMES--ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVG--LPVTQTSLHRR 285
H V S ++ ++A KL+ Y L + L++ N+ +V L T +SL +R
Sbjct: 111 HNVPSAQAIVKKAIVEKLSQVYHRRTRLAETGSRYPLEVVINKDHVMILLDTTGSSLFKR 170
Query: 286 NIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
+ LK +A +V LA P + F+DP+CG GTIP+E +L
Sbjct: 171 GYRKAKGGAPLKENMAAALVMLAHWFPDNPFVDPVCGSGTIPIEAAL 217
>gi|448427035|ref|ZP_21583588.1| RNA methylase [Halorubrum terrestre JCM 10247]
gi|445679082|gb|ELZ31563.1| RNA methylase [Halorubrum terrestre JCM 10247]
Length = 372
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 8/146 (5%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F ++ P A LA PG LDPMCG G +P+E L V D K+V
Sbjct: 181 FQPGSMAPADARAYANLAGAAPGRTLLDPMCGTGGLPLEAGLVGADA--VACDAQAKMVR 238
Query: 350 KTQANVLHNSGNLNRELKVSPLVC--NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLL 407
+ N G + + V + L VDG+ D P+G++ SK L
Sbjct: 239 GARENFREYLGAPDTDDSPDWHVARGDATALPVPDDAVDGVAFDAPYGRQ--SKIARHEL 296
Query: 408 YRLFLIEIGKIVRPQIGRAILLTSDR 433
L + + R + +L +DR
Sbjct: 297 ADLVAGALAEAAR--VAPRAVLVADR 320
>gi|373500018|ref|ZP_09590409.1| hypothetical protein HMPREF9140_00527 [Prevotella micans F0438]
gi|371954962|gb|EHO72767.1| hypothetical protein HMPREF9140_00527 [Prevotella micans F0438]
Length = 492
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
+ + + D+ +N+ I ++A + L + SLHRR + ++ L +A M+ +
Sbjct: 132 ISVSNPDVRLNIHIADDKATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMILMTGWKG 191
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GT+ +E +L
Sbjct: 192 ETDFIDPMCGSGTLLIEAAL 211
>gi|229172298|ref|ZP_04299861.1| Site-specific DNA-methyltransferase [Bacillus cereus MM3]
gi|228611181|gb|EEK68440.1| Site-specific DNA-methyltransferase [Bacillus cereus MM3]
Length = 381
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 57/205 (27%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 151 ATLTIDASGVGLHKRGYRMDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 210
Query: 330 SL-------------------------------------SYPHTFFVCG-DINEKLVLKT 351
+L +Y + G DI+ +++
Sbjct: 211 ALIGQNIAPGFNRGFASDEWGWVGKQNWREARQEAEDLANYNQPLQIIGSDIDHRMIRVA 270
Query: 352 QANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG----IVTDLPFGKRVGSKSNNFLL 407
Q N E+ +S L+ +Q+ K +VT+ P+G+R+ K+ L
Sbjct: 271 QDNA--------EEVGLSDLI-TFKQMQVKDFTTKEDYGYVVTNPPYGERLSEKALVEQL 321
Query: 408 YRLFLIEIGKIVRP-QIGRAILLTS 431
Y+ E+G++ RP A +LTS
Sbjct: 322 YK----EMGQVFRPLDTWSAYVLTS 342
>gi|238919293|ref|YP_002932808.1| RNA methylase family protein [Edwardsiella ictaluri 93-146]
gi|238868862|gb|ACR68573.1| RNA methylase family protein [Edwardsiella ictaluri 93-146]
Length = 705
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 257 DYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVF 315
D DI I++ ++ A V L ++ LH+R + LK T+A +V + PG
Sbjct: 134 DPDIRISVYLQRETAIVSLDLSGDGLHQRGYRDVTGQAPLKETLAAAVVLRSGWQPGTPM 193
Query: 316 LDPMCGGGTIPVECSL 331
+DPMCG GT+ +E ++
Sbjct: 194 VDPMCGSGTLLIEAAM 209
>gi|423460461|ref|ZP_17437258.1| hypothetical protein IEI_03601 [Bacillus cereus BAG5X2-1]
gi|401140514|gb|EJQ48070.1| hypothetical protein IEI_03601 [Bacillus cereus BAG5X2-1]
Length = 379
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 57/205 (27%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 149 ATLTIDASGVGLHKRGYRMDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 208
Query: 330 SL-------------------------------------SYPHTFFVCG-DINEKLVLKT 351
+L +Y + G DI+ +++
Sbjct: 209 ALIGQNIAPGFNRGFASDEWGWVGKQNWREARQEAEDLANYNQPLQIIGSDIDHRMIRVA 268
Query: 352 QANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG----IVTDLPFGKRVGSKSNNFLL 407
Q N E+ +S L+ +Q+ K +VT+ P+G+R+ K+ L
Sbjct: 269 QDNA--------EEVGLSDLI-TFKQMQVKDFTTKEDYGYVVTNPPYGERLSEKALVEQL 319
Query: 408 YRLFLIEIGKIVRP-QIGRAILLTS 431
Y+ E+G++ RP A +LTS
Sbjct: 320 YK----EMGQVFRPLDTWSAYVLTS 340
>gi|448525913|ref|ZP_21619697.1| RNA methylase, partial [Halorubrum distributum JCM 10118]
gi|445699464|gb|ELZ51491.1| RNA methylase, partial [Halorubrum distributum JCM 10118]
Length = 277
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 81/229 (35%), Gaps = 30/229 (13%)
Query: 228 GKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRY-----NEAYVGLPVTQTSL 282
G V++ +ER GG L D F VDLDD D + ++A G L
Sbjct: 4 GTAGVSTETAERELGGVLVDRGF-DVDLDDPDHVLRALFAAGPRAEHDAVAGADGGDADL 62
Query: 283 HRRNIVE----------------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIP 326
V F ++ P A LA PG LDPMCG G +P
Sbjct: 63 CALGWVAAEAARDFAPNPTDRPFFQPGSMAPADARAYANLAGAAPGRTLLDPMCGTGGLP 122
Query: 327 VECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC--NVRQLCFKPAC 384
+E L V D K+V + N G + V + L
Sbjct: 123 LEAGLVGADA--VACDAQAKMVRGARENFREYLGAPGTDDSPDWHVARGDATALPVPDDA 180
Query: 385 VDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433
VDG+ D P+G++ SK L L + + R + +L +DR
Sbjct: 181 VDGVAFDAPYGRQ--SKIARHELADLVAGALAEAAR--VAPRAVLVADR 225
>gi|452976615|gb|EME76430.1| RNA methyltransferase YpsC [Bacillus sonorensis L12]
Length = 382
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 251 WLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLAS 308
WL + +Y ++I+L ++A + L + LH+R LK T+A ++ L +
Sbjct: 131 WLEETGPEYKLEISL--LKDKAVITLDSSGAGLHKRGYRAGQGEAPLKETLAAALILLTN 188
Query: 309 PIPGDVFLDPMCGGGTIPVECSL 331
P F+DP CG GTIP+E +L
Sbjct: 189 WTPDRPFVDPFCGSGTIPIEAAL 211
>gi|288556212|ref|YP_003428147.1| hypothetical protein BpOF4_16030 [Bacillus pseudofirmus OF4]
gi|288547372|gb|ADC51255.1| hypothetical protein BpOF4_16030 [Bacillus pseudofirmus OF4]
Length = 382
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 277 VTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
+ T LH+R N LK T+A MV L + P F DP CG GT+P+E ++
Sbjct: 155 TSGTGLHKRGYRYLHNQAPLKETLAAAMVMLTTWRPDRPFADPFCGSGTLPIEAAM 210
>gi|330752037|emb|CBL80549.1| protein with similarity to RNA methylase family UPF0020 [uncultured
Flavobacteriia bacterium]
Length = 385
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VDLD + +N+ I N + L + SLH+R V + + +A M+ LA
Sbjct: 133 VDLDHPTLRVNIHIDRNICTLSLDSSGQSLHKRGYKVANTMAPINEVLAAGMIMLAGWNG 192
Query: 312 GDVFLDPMCGGGTIPVECSL 331
LDPMCG GTI E ++
Sbjct: 193 QSDLLDPMCGSGTILTEAAM 212
>gi|94265285|ref|ZP_01289043.1| Putative RNA methylase:THUMP [delta proteobacterium MLMS-1]
gi|93454219|gb|EAT04537.1| Putative RNA methylase:THUMP [delta proteobacterium MLMS-1]
Length = 382
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 212 NPEEN-LLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDY--DIDINLQIRY 268
NPE++ ++ RV+ +R+ ++ + A +D + D+ I+L IR
Sbjct: 95 NPEQSFMINARVSGSRISHSQYAALRLKDAIVDYFQQRSGRRPGIDKHQPDLVIDLHIRR 154
Query: 269 NEAYVGLPVTQTSLHRRNIVEFNI-TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPV 327
N A + L + SLHRR + ++ ++ T+A M+ A +DP CG GT+
Sbjct: 155 NRAVISLDLAGGSLHRRGYRQESVEAPIQETLAAAMIDFAGWDGAKKLVDPCCGSGTLLA 214
Query: 328 EC 329
E
Sbjct: 215 EA 216
>gi|14590840|ref|NP_142912.1| hypothetical protein PH0997 [Pyrococcus horikoshii OT3]
gi|3257411|dbj|BAA30094.1| 374aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 374
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 13/117 (11%)
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353
++ P +A MV L+ G+V LDP CG GTI +E +L + + DI E V +
Sbjct: 181 SIPPRLARVMVNLSEIRRGNV-LDPFCGTGTIVMELTLQGLNAY--GTDIEEGRVRDAKK 237
Query: 354 NVLHNSGNLNRELKVS--PL--VCNVRQL--CFKPACVDGIVTDLPFGKRVGSKSNN 404
N+ L +E ++ P+ VC+VR+L CF D I+T+ GK + K +
Sbjct: 238 NI----DWLRKEFRIRKYPVLKVCDVRRLRKCFPRTRFDAIITEPYMGKPLKYKPSR 290
>gi|395800664|ref|ZP_10479936.1| rRNA (guanine-N(2)-)-methyltransferase [Flavobacterium sp. F52]
gi|395437072|gb|EJG02994.1| rRNA (guanine-N(2)-)-methyltransferase [Flavobacterium sp. F52]
Length = 385
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLD 317
D+ IN+ I ++ V L + SLH+R NI + +A ++ L+ FLD
Sbjct: 139 DLRINIHIDKDQVSVALDTSGASLHQRGYRTATNIAPINEVLAAGILLLSGWDGQSHFLD 198
Query: 318 PMCGGGTIPVECSL 331
PMCG GT E ++
Sbjct: 199 PMCGSGTFLAEAAM 212
>gi|395216363|ref|ZP_10401302.1| THUMP domain-containing protein [Pontibacter sp. BAB1700]
gi|394455391|gb|EJF09865.1| THUMP domain-containing protein [Pontibacter sp. BAB1700]
Length = 356
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLD 317
D+ +NL + N + L + SLHRR ++ N+ L +A ++ L+ +F+D
Sbjct: 144 DVRLNLHMHENMVTLSLDSSGDSLHRRGYRLQTNVAPLNEVLAAGIIALSGWDKKSIFID 203
Query: 318 PMCGGGTIPVECSL 331
PM G GT +E ++
Sbjct: 204 PMAGSGTFLIEAAM 217
>gi|359687801|ref|ZP_09257802.1| hypothetical protein LlicsVM_05433, partial [Leptospira licerasiae
serovar Varillal str. MMD0835]
Length = 475
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 30/186 (16%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRR-NIVEFNITTLKPTIAYNMVRLASPIP 311
D ++ ++ L+ R N+ + L + L RR + E L+ T+A ++R + P
Sbjct: 236 ADREEPEVLFYLRSRMNQVKLFLALHAQPLQRRGHGREGGEAPLRETLAQALLRFSGWKP 295
Query: 312 GDVFLDPMCGGGTIPVECSLS-----------------YPHTFFVCG---DINEKLVLKT 351
G+ DP CG GT+ +E +L + F C + + K +L
Sbjct: 296 GEALYDPFCGSGTLLIEAALRMRNGGWVNYKSLSRSSIFTRLFGPCKAKEEWDSKEILLF 355
Query: 352 QANVLHNSGNL----NRELKVSPL----VCNVRQLCFKPACVDG-IVTDLPFGKRVGSKS 402
+++ ++ L +E V+ L V + + P +G IVT+ P+G R+G K
Sbjct: 356 GSDISEDAIELAKKNAKEAGVADLIRWKVASAEEQDASPGFKEGKIVTNPPYGVRLGDKE 415
Query: 403 NNFLLY 408
+ LY
Sbjct: 416 SVSELY 421
>gi|239827281|ref|YP_002949905.1| RNA methylase [Geobacillus sp. WCH70]
gi|239807574|gb|ACS24639.1| putative RNA methylase [Geobacillus sp. WCH70]
Length = 384
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I + + + A + + + LH+R + LK T+A +V+L + P F+DP C
Sbjct: 139 IEVALHKDIATLTIDTSGAGLHKRGYRIAQGEAPLKETLAAALVQLTNWTPDRPFVDPFC 198
Query: 321 GGGTIPVECSL 331
G GTIP+E +L
Sbjct: 199 GSGTIPIEAAL 209
>gi|448406903|ref|ZP_21573335.1| RNA methylase [Halosimplex carlsbadense 2-9-1]
gi|445676709|gb|ELZ29226.1| RNA methylase [Halosimplex carlsbadense 2-9-1]
Length = 368
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F ++ P +A +V +A G +DPMCG G + +E L V D K+
Sbjct: 195 FQPGSMDPILARALVNIAGARDGATVVDPMCGTGGLLLEAGLVGARA--VGSDAQAKMTR 252
Query: 350 KTQANV---LHNSGNLNRELKVSPLVC--NVRQLCFKPACVDGIVTDLPFGKR 397
T+AN+ L + G+ VC +V +L F D V D+P+G++
Sbjct: 253 GTRANLRDALGDDGDF--------AVCRGDVTRLPFADGFADAAVFDVPYGRQ 297
>gi|304384916|ref|ZP_07367262.1| site-specific DNA-methyltransferase [Pediococcus acidilactici DSM
20284]
gi|304329110|gb|EFL96330.1| site-specific DNA-methyltransferase [Pediococcus acidilactici DSM
20284]
Length = 376
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 43/242 (17%)
Query: 230 HTVTSMES--ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYV--GLPVTQTSLHRR 285
H+V +++ ++A KL + Y W L + L++ ++ +V L T SL +R
Sbjct: 104 HSVPDVQAITKKAIVEKLREVYHWRNQLPETGAKYGLEVSIDKDHVLITLDTTGDSLFKR 163
Query: 286 NIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL---SYPHTF---F 338
+ + LK T+A +V L + +DP CG GTIP+E +L + F F
Sbjct: 164 GYRLYKGSAPLKETMAAALVMLTNWHADKPLVDPFCGSGTIPIEAALIGQNIAPGFNRSF 223
Query: 339 VCGD---INEKLVLKTQANVLHNS--------------------GNLNRELKVSPLVCNV 375
C +++LV + +A + N N E + N
Sbjct: 224 ACESWEMADKELVERIRAEADEKADYDVELDITGYDIDGKMVEIANKNAEEAGLAGIINF 283
Query: 376 RQLC---FKPACVDGI-VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA-ILLT 430
+Q FK +G+ + + P+G+R+ + +YR ++G + RP + + +T
Sbjct: 284 KQQAVKDFKTEQKNGVMIGNPPYGQRLSDQKAAREIYR----QLGTVTRPLVTWSKYFIT 339
Query: 431 SD 432
SD
Sbjct: 340 SD 341
>gi|294665153|ref|ZP_06730454.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292605066|gb|EFF48416.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 711
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYN-MVRLASP- 309
VD+D+ D+ +NL +R A + + + LHRR + N LK +A ++R P
Sbjct: 129 VDVDNPDLRLNLSLRKGRATISVDLGGGPLHRRGWRMAQNEAPLKENLAAAVLMRGGWPR 188
Query: 310 --IPGDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E +L
Sbjct: 189 AYADGGGLLDPMCGSGTLLIEGAL 212
>gi|184155653|ref|YP_001843993.1| hypothetical protein LAF_1177 [Lactobacillus fermentum IFO 3956]
gi|227514867|ref|ZP_03944916.1| site-specific DNA-methyltransferase [Lactobacillus fermentum ATCC
14931]
gi|183226997|dbj|BAG27513.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
gi|227086776|gb|EEI22088.1| site-specific DNA-methyltransferase [Lactobacillus fermentum ATCC
14931]
Length = 377
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 230 HTVTSMES--ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVG--LPVTQTSLHRR 285
H V S ++ ++A KL+ Y L + L++ N+ +V L T +SL +R
Sbjct: 104 HNVPSAQAIVKKAIVEKLSQVYHRRTRLAETGSRYPLEVVINKDHVMILLDTTGSSLFKR 163
Query: 286 NIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
+ LK +A +V LA P + F+DP+CG GTIP+E +L
Sbjct: 164 GYRKAKGGAPLKENMAAALVMLAHWFPDNPFVDPVCGSGTIPIEAAL 210
>gi|389578462|ref|ZP_10168489.1| putative N6-adenine-specific DNA methylase [Desulfobacter postgatei
2ac9]
gi|389400097|gb|EIM62319.1| putative N6-adenine-specific DNA methylase [Desulfobacter postgatei
2ac9]
Length = 401
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 80/205 (39%), Gaps = 54/205 (26%)
Query: 260 IDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDP 318
I IN+ I + A + + LH+R E ++ ++ T+A ++ L+ + LDP
Sbjct: 165 IMINVHIHKDRAAISIDAGSGPLHKRGYREARVSAPMQETVAAAIIALSGWNGEEPLLDP 224
Query: 319 MCGGGTIPVECSLSY---------------------------------------PHTFFV 339
MCG GT+ E + Y P
Sbjct: 225 MCGSGTLLCEALMHYSRIPAQIFREQFGFERLPDFNVREWEAVKAAADKAIRPLPRGLIR 284
Query: 340 CGDINEKLVLKTQANV--LHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397
DI++ V T+ N+ LH ++ EL + RQL + IVT+ P+G R
Sbjct: 285 GSDISDLAVEATRTNLMGLHYGAQIDVEL------ADFRQLNRVENAL--IVTNPPYGIR 336
Query: 398 VGSKSNNFLLYRLFLIEIGKIVRPQ 422
+G N +LF ++G+ ++ Q
Sbjct: 337 MGKDQN----MKLFYNDLGQFLKEQ 357
>gi|260435036|ref|ZP_05789006.1| conserved hypothetical protein [Synechococcus sp. WH 8109]
gi|260412910|gb|EEX06206.1| conserved hypothetical protein [Synechococcus sp. WH 8109]
Length = 388
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+DLDD D+ ++L + EA + L + SLHRR LK +A ++RL
Sbjct: 144 IDLDDPDLSLHLHLGRGEAQLSLDGSGGSLHRRGYRAAMGAAPLKENLAAGLIRLTGWDG 203
Query: 312 GDVFLDPMCGGG 323
+DP CG G
Sbjct: 204 NQPLVDPCCGSG 215
>gi|212639189|ref|YP_002315709.1| N6-adenine-specific DNA methylase [Anoxybacillus flavithermus WK1]
gi|212560669|gb|ACJ33724.1| Predicted N6-adenine-specific DNA methylase [Anoxybacillus
flavithermus WK1]
Length = 379
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I + + + A + + + LH+R V+ LK T+A +VRL + P F+DP C
Sbjct: 141 IEVALHKDVATLTIDTSGAGLHKRGYRVKQGEAPLKETLAAALVRLTNWTPDRPFVDPFC 200
Query: 321 GGGTIPVECSL 331
G GTI +E +L
Sbjct: 201 GSGTIAIEAAL 211
>gi|418069127|ref|ZP_12706407.1| N6-adenine-specific DNA methylase [Pediococcus acidilactici
MA18/5M]
gi|357537860|gb|EHJ21883.1| N6-adenine-specific DNA methylase [Pediococcus acidilactici
MA18/5M]
Length = 376
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 43/242 (17%)
Query: 230 HTVTSMES--ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYV--GLPVTQTSLHRR 285
H+V +++ ++A KL + Y W L + L++ ++ +V L T SL +R
Sbjct: 104 HSVPDVQAITKKAIVEKLREVYHWRNQLPETGAKYGLEVSIDKDHVLITLDTTGDSLFKR 163
Query: 286 NIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL---SYPHTF---F 338
+ + LK T+A +V L + +DP CG GTIP+E +L + F F
Sbjct: 164 GYRLYKGSAPLKETMAAALVMLTNWHADKPLVDPFCGSGTIPIEAALIGQNIAPGFNRSF 223
Query: 339 VCGD---INEKLVLKTQANVLHNS--------------------GNLNRELKVSPLVCNV 375
C +++LV + +A + N N E + N
Sbjct: 224 ACESWEMADKELVERIRAEADEKADYDVELDITGYDIDGKMVEIANKNAEEAGLAGIINF 283
Query: 376 RQLC---FKPACVDGI-VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA-ILLT 430
+Q FK +G+ + + P+G+R+ + +YR ++G + RP + + +T
Sbjct: 284 KQQAVKDFKTEQKNGVMIGNPPYGQRLSDQKAACEIYR----QLGTVTRPLVTWSKYFIT 339
Query: 431 SD 432
SD
Sbjct: 340 SD 341
>gi|427392657|ref|ZP_18886662.1| hypothetical protein HMPREF9698_00468 [Alloiococcus otitis ATCC
51267]
gi|425731167|gb|EKU93988.1| hypothetical protein HMPREF9698_00468 [Alloiococcus otitis ATCC
51267]
Length = 378
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 89/215 (41%), Gaps = 57/215 (26%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I + + ++ + L T SL +R LK +A +++L + P F+DP C
Sbjct: 140 IEVALNKDQVLLTLDTTGDSLFKRGYRTGKGPAPLKENLAAALIKLTTWFPDKPFVDPTC 199
Query: 321 GGGTIPVECSL-------------------SYPHTFF------------------VCG-D 342
G GT+P+E +L S P + + G D
Sbjct: 200 GSGTLPIEAALIGHNIAPGFNRSFLCENWPSMPQELWEKVRLEADQAANYDIDLDIAGYD 259
Query: 343 INEKLVLKTQANV----LHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRV 398
I+ ++V Q N L++S + ++++V+ + + ++++ P+G+R+
Sbjct: 260 IDHRMVEIAQENAMEAGLYHSISF-KQMQVADFTTDKK--------FGIMISNPPYGERL 310
Query: 399 GSKSNNFLLYRLFLIEIGKIVRP-QIGRAILLTSD 432
G K LYR E+G+ RP + ++TSD
Sbjct: 311 GDKEKANQLYR----EMGQAFRPHETWSKYIITSD 341
>gi|423435146|ref|ZP_17412127.1| hypothetical protein IE9_01327 [Bacillus cereus BAG4X12-1]
gi|423504746|ref|ZP_17481337.1| hypothetical protein IG1_02311 [Bacillus cereus HD73]
gi|449088451|ref|YP_007420892.1| hypothetical protein HD73_1793 [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|401125384|gb|EJQ33144.1| hypothetical protein IE9_01327 [Bacillus cereus BAG4X12-1]
gi|402455268|gb|EJV87051.1| hypothetical protein IG1_02311 [Bacillus cereus HD73]
gi|449022208|gb|AGE77371.1| hypothetical protein HD73_1793 [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 379
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 149 ATLTIDASGVGLHKRGYRMDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 208
Query: 330 SL 331
+L
Sbjct: 209 AL 210
>gi|407647909|ref|YP_006811668.1| putative RNA methylase [Nocardia brasiliensis ATCC 700358]
gi|407310793|gb|AFU04694.1| putative RNA methylase [Nocardia brasiliensis ATCC 700358]
Length = 352
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 92/231 (39%), Gaps = 25/231 (10%)
Query: 236 ESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNIT-T 294
S R + W V LD + L+I + LHRR + ++ +
Sbjct: 140 HSRRGGARPPDSGSGWRVTLDGQHARLMLRIATHP-----------LHRRPYKQQSVPGS 188
Query: 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN 354
L P +A MV+LA PGD LDP CG GT+ +E P + D + V T+AN
Sbjct: 189 LHPPVASAMVQLADLRPGDRVLDPCCGAGTLLLEARHLQPAATYRGFDADPAAVRATRAN 248
Query: 355 VLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIE 414
+ + + + P +D IV + P+ + ++ E
Sbjct: 249 A---------AATIPARLGDAANVPLPPGSIDRIVCNPPWDSQAPARGLLSHSSLPLWTE 299
Query: 415 IGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVF 465
+ +++ G A+LL D + L A+H A + ++ +SG SF+
Sbjct: 300 LRRLLTAN-GIAVLLIPDARELATAIH---AGFTPTHLQQVRISGRPSFLI 346
>gi|85816686|gb|EAQ37872.1| putative RNA methylase family UPF0020 [Dokdonia donghaensis MED134]
Length = 391
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD D+ +N+ I+ N + L + SLH R NI + +A ++ ++
Sbjct: 136 VDTKHPDLRLNVHIQDNWCTLSLDSSGASLHHRGYRTATNIAPINEALAAGLIIMSGWHG 195
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GT+ +E ++
Sbjct: 196 QSDFLDPMCGSGTMCIEAAM 215
>gi|75761715|ref|ZP_00741657.1| Methyltransferase [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|74490790|gb|EAO54064.1| Methyltransferase [Bacillus thuringiensis serovar israelensis ATCC
35646]
Length = 380
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 150 ATLTIDASGVGLHKRGYRMDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 209
Query: 330 SL 331
+L
Sbjct: 210 AL 211
>gi|357418106|ref|YP_004931126.1| 23S rRNA m(2)G2445 methyltransferase [Pseudoxanthomonas spadix
BD-a59]
gi|355335684|gb|AER57085.1| 23S rRNA m(2)G2445 methyltransferase [Pseudoxanthomonas spadix
BD-a59]
Length = 713
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 18/135 (13%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLA---- 307
VD+DD D+ IN +R A + + + LHRR N LK +A ++
Sbjct: 129 VDVDDPDVRINFSLRKGRATLSIDLGGGPLHRRGWRRVRNDAPLKENLAAAVLMRGGWSQ 188
Query: 308 SPIPGDVFLDPMCGGGTIPVECSL-------------SYPHTFFVCGDINEKLVLKTQAN 354
S G LDPMCG GT+ +E L S P T ++ D+ L+ QA
Sbjct: 189 SYAGGGGLLDPMCGSGTLLIEGVLMAADVAPGLQRHGSLPPTRWLGFDMAHWQGLREQAR 248
Query: 355 VLHNSGNLNRELKVS 369
+G +V+
Sbjct: 249 ERETAGRAALPAQVA 263
>gi|386714533|ref|YP_006180856.1| hypothetical protein HBHAL_3236 [Halobacillus halophilus DSM 2266]
gi|384074089|emb|CCG45582.1| conserved hypothetical protein [Halobacillus halophilus DSM 2266]
Length = 378
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
+ + + +EA + + + + LH+R V LK T+A +V++ + P + F+DP C
Sbjct: 142 VEIALHKDEALLTIDTSGSGLHKRGYRVGQGEAPLKETLAAALVQVTNWHPDEPFVDPFC 201
Query: 321 GGGTIPVECSL 331
G GTI +E +L
Sbjct: 202 GSGTIAIEAAL 212
>gi|256811021|ref|YP_003128390.1| putative RNA methylase [Methanocaldococcus fervens AG86]
gi|256794221|gb|ACV24890.1| putative RNA methylase [Methanocaldococcus fervens AG86]
Length = 351
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 12/181 (6%)
Query: 231 TVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVG--LPVTQTSLHRRNIV 288
++ S++ ER GG + V+L D+ + + I N +V L + ++N
Sbjct: 119 SINSLKIERELGGIIKLKTNAKVNLTKPDVLVRVVILENNFFVSNVLEMRDREYFQKNRP 178
Query: 289 E----FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDIN 344
F+ + P +A MV LA GDV LDP CG G +E L + DI+
Sbjct: 179 HLRKYFHPGCMLPKLARTMVNLARVKEGDVVLDPFCGTGGFLIEAGLI--GAKLIGCDID 236
Query: 345 EKLVLKTQANVLHNSGNLNRELKVSPLVCN-VRQLC--FKPACVDGIVTDLPFGKRVGSK 401
++ T N L L+ +KV L V++ VD +VTD P+G K
Sbjct: 237 WRMASGTLIN-LEEYNLLDNVIKVKKLDAKYVKEFLNELNIEKVDAVVTDPPYGISTAKK 295
Query: 402 S 402
Sbjct: 296 G 296
>gi|423423734|ref|ZP_17400765.1| hypothetical protein IE5_01423 [Bacillus cereus BAG3X2-2]
gi|401114562|gb|EJQ22420.1| hypothetical protein IE5_01423 [Bacillus cereus BAG3X2-2]
Length = 379
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 149 ATLTIDASGVGLHKRGYRMDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 208
Query: 330 SL 331
+L
Sbjct: 209 AL 210
>gi|365162360|ref|ZP_09358490.1| hypothetical protein HMPREF1014_03953 [Bacillus sp. 7_6_55CFAA_CT2]
gi|363618673|gb|EHL70017.1| hypothetical protein HMPREF1014_03953 [Bacillus sp. 7_6_55CFAA_CT2]
Length = 379
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 149 ATLTIDASGVGLHKRGYRMDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 208
Query: 330 SL 331
+L
Sbjct: 209 AL 210
>gi|228952039|ref|ZP_04114134.1| hypothetical protein bthur0006_14500 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229069212|ref|ZP_04202503.1| hypothetical protein bcere0025_14180 [Bacillus cereus F65185]
gi|228713964|gb|EEL65848.1| hypothetical protein bcere0025_14180 [Bacillus cereus F65185]
gi|228807571|gb|EEM54095.1| hypothetical protein bthur0006_14500 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
Length = 381
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 151 ATLTIDASGVGLHKRGYRMDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 210
Query: 330 SL 331
+L
Sbjct: 211 AL 212
>gi|206970553|ref|ZP_03231505.1| conserved hypothetical protein [Bacillus cereus AH1134]
gi|218232100|ref|YP_002366341.1| hypothetical protein BCB4264_A1617 [Bacillus cereus B4264]
gi|228964637|ref|ZP_04125745.1| hypothetical protein bthur0004_14820 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|296502228|ref|YP_003663928.1| methyltransferase [Bacillus thuringiensis BMB171]
gi|402561349|ref|YP_006604073.1| methyltransferase [Bacillus thuringiensis HD-771]
gi|423361618|ref|ZP_17339120.1| hypothetical protein IC1_03597 [Bacillus cereus VD022]
gi|423383054|ref|ZP_17360310.1| hypothetical protein ICE_00800 [Bacillus cereus BAG1X1-2]
gi|423414654|ref|ZP_17391774.1| hypothetical protein IE1_03958 [Bacillus cereus BAG3O-2]
gi|423429564|ref|ZP_17406568.1| hypothetical protein IE7_01380 [Bacillus cereus BAG4O-1]
gi|423530486|ref|ZP_17506931.1| hypothetical protein IGE_04038 [Bacillus cereus HuB1-1]
gi|423579851|ref|ZP_17555962.1| hypothetical protein IIA_01366 [Bacillus cereus VD014]
gi|423587958|ref|ZP_17564045.1| hypothetical protein IIE_03370 [Bacillus cereus VD045]
gi|423629480|ref|ZP_17605228.1| hypothetical protein IK5_02331 [Bacillus cereus VD154]
gi|423637690|ref|ZP_17613343.1| hypothetical protein IK7_04099 [Bacillus cereus VD156]
gi|423643296|ref|ZP_17618914.1| hypothetical protein IK9_03241 [Bacillus cereus VD166]
gi|423647586|ref|ZP_17623156.1| hypothetical protein IKA_01373 [Bacillus cereus VD169]
gi|423654440|ref|ZP_17629739.1| hypothetical protein IKG_01428 [Bacillus cereus VD200]
gi|434374598|ref|YP_006609242.1| methyltransferase [Bacillus thuringiensis HD-789]
gi|206734189|gb|EDZ51359.1| conserved hypothetical protein [Bacillus cereus AH1134]
gi|218160057|gb|ACK60049.1| conserved hypothetical protein [Bacillus cereus B4264]
gi|228795068|gb|EEM42566.1| hypothetical protein bthur0004_14820 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|296323280|gb|ADH06208.1| methyltransferase [Bacillus thuringiensis BMB171]
gi|401079429|gb|EJP87727.1| hypothetical protein IC1_03597 [Bacillus cereus VD022]
gi|401097574|gb|EJQ05596.1| hypothetical protein IE1_03958 [Bacillus cereus BAG3O-2]
gi|401121870|gb|EJQ29659.1| hypothetical protein IE7_01380 [Bacillus cereus BAG4O-1]
gi|401217306|gb|EJR24000.1| hypothetical protein IIA_01366 [Bacillus cereus VD014]
gi|401227695|gb|EJR34224.1| hypothetical protein IIE_03370 [Bacillus cereus VD045]
gi|401267347|gb|EJR73407.1| hypothetical protein IK5_02331 [Bacillus cereus VD154]
gi|401273633|gb|EJR79618.1| hypothetical protein IK7_04099 [Bacillus cereus VD156]
gi|401275300|gb|EJR81267.1| hypothetical protein IK9_03241 [Bacillus cereus VD166]
gi|401285540|gb|EJR91379.1| hypothetical protein IKA_01373 [Bacillus cereus VD169]
gi|401295951|gb|EJS01574.1| hypothetical protein IKG_01428 [Bacillus cereus VD200]
gi|401643914|gb|EJS61608.1| hypothetical protein ICE_00800 [Bacillus cereus BAG1X1-2]
gi|401790001|gb|AFQ16040.1| methyltransferase [Bacillus thuringiensis HD-771]
gi|401873155|gb|AFQ25322.1| methyltransferase [Bacillus thuringiensis HD-789]
gi|402447001|gb|EJV78859.1| hypothetical protein IGE_04038 [Bacillus cereus HuB1-1]
Length = 379
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 149 ATLTIDASGVGLHKRGYRMDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 208
Query: 330 SL 331
+L
Sbjct: 209 AL 210
>gi|284162400|ref|YP_003401023.1| RNA methylase [Archaeoglobus profundus DSM 5631]
gi|284012397|gb|ADB58350.1| putative RNA methylase [Archaeoglobus profundus DSM 5631]
Length = 317
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 14/136 (10%)
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353
+ P I MV + + G LDPMCG GT +E L FV + +++V
Sbjct: 156 VIPPKIGRAMVNITA---GKYILDPMCGTGTFLIEAGLM--GLDFVGVEAYDRIVRGCAE 210
Query: 354 NVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLI 413
N+ +L V+ + + R L FK DGIVTD P+ + N L +
Sbjct: 211 NLKFF------KLPVNVIRGDARNLPFKDEVFDGIVTDFPYKRSTRLFGEN--LVERAVE 262
Query: 414 EIGKIVRPQIGRAILL 429
EI ++++P GRA+L+
Sbjct: 263 EIHRVLKPD-GRAVLV 277
>gi|424793644|ref|ZP_18219729.1| Putative RNA methylase [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|422796494|gb|EKU24992.1| Putative RNA methylase [Xanthomonas translucens pv. graminis
ART-Xtg29]
Length = 726
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYN-MVRLASP- 309
VD++ D+ +NL +R A + + + SLHRR + N LK +A ++R P
Sbjct: 129 VDVEHPDLRLNLSLRKGRATLSVDLGGGSLHRRGWRQVQNAAPLKENLAAAVLLRGQWPQ 188
Query: 310 --IPGDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E +L
Sbjct: 189 LYAQGGGLLDPMCGSGTLLIEGAL 212
>gi|198274436|ref|ZP_03206968.1| hypothetical protein BACPLE_00584 [Bacteroides plebeius DSM 17135]
gi|198272638|gb|EDY96907.1| THUMP domain protein [Bacteroides plebeius DSM 17135]
Length = 506
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNI-TTLKPTIAYNMVRLASPIPGDV-FL 316
D+ I++ I E + L + SLHRR + + L +A M+ L + G+ +
Sbjct: 139 DLAIHIHIAEEECTLALDSSGESLHRRGYRQEQVEAPLNEVLAAGMI-LMTGWRGECDLI 197
Query: 317 DPMCGGGTIPVECSL 331
DPMCG GTIP+E +L
Sbjct: 198 DPMCGSGTIPIEAAL 212
>gi|218896590|ref|YP_002445001.1| hypothetical protein BCG9842_B3727 [Bacillus cereus G9842]
gi|218545311|gb|ACK97705.1| conserved hypothetical protein [Bacillus cereus G9842]
Length = 379
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 149 ATLTIDASGVGLHKRGYRMDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 208
Query: 330 SL 331
+L
Sbjct: 209 AL 210
>gi|228907294|ref|ZP_04071153.1| hypothetical protein bthur0013_14620 [Bacillus thuringiensis IBL
200]
gi|228852348|gb|EEM97143.1| hypothetical protein bthur0013_14620 [Bacillus thuringiensis IBL
200]
Length = 381
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 151 ATLTIDASGVGLHKRGYRMDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 210
Query: 330 SL 331
+L
Sbjct: 211 AL 212
>gi|228900240|ref|ZP_04064471.1| hypothetical protein bthur0014_14460 [Bacillus thuringiensis IBL
4222]
gi|228920370|ref|ZP_04083716.1| hypothetical protein bthur0011_13840 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228957936|ref|ZP_04119675.1| hypothetical protein bthur0005_14490 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229043406|ref|ZP_04191122.1| hypothetical protein bcere0027_14550 [Bacillus cereus AH676]
gi|229078842|ref|ZP_04211395.1| hypothetical protein bcere0023_15050 [Bacillus cereus Rock4-2]
gi|229109115|ref|ZP_04238715.1| hypothetical protein bcere0018_13870 [Bacillus cereus Rock1-15]
gi|229126975|ref|ZP_04255983.1| hypothetical protein bcere0015_14320 [Bacillus cereus BDRD-Cer4]
gi|229144258|ref|ZP_04272672.1| hypothetical protein bcere0012_14210 [Bacillus cereus BDRD-ST24]
gi|229149856|ref|ZP_04278084.1| hypothetical protein bcere0011_14140 [Bacillus cereus m1550]
gi|229178068|ref|ZP_04305440.1| hypothetical protein bcere0005_14310 [Bacillus cereus 172560W]
gi|229189742|ref|ZP_04316756.1| hypothetical protein bcere0002_14190 [Bacillus cereus ATCC 10876]
gi|228593791|gb|EEK51596.1| hypothetical protein bcere0002_14190 [Bacillus cereus ATCC 10876]
gi|228605556|gb|EEK63005.1| hypothetical protein bcere0005_14310 [Bacillus cereus 172560W]
gi|228633537|gb|EEK90138.1| hypothetical protein bcere0011_14140 [Bacillus cereus m1550]
gi|228639266|gb|EEK95682.1| hypothetical protein bcere0012_14210 [Bacillus cereus BDRD-ST24]
gi|228656456|gb|EEL12286.1| hypothetical protein bcere0015_14320 [Bacillus cereus BDRD-Cer4]
gi|228674393|gb|EEL29637.1| hypothetical protein bcere0018_13870 [Bacillus cereus Rock1-15]
gi|228704524|gb|EEL56957.1| hypothetical protein bcere0023_15050 [Bacillus cereus Rock4-2]
gi|228725914|gb|EEL77155.1| hypothetical protein bcere0027_14550 [Bacillus cereus AH676]
gi|228801730|gb|EEM48608.1| hypothetical protein bthur0005_14490 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228839292|gb|EEM84587.1| hypothetical protein bthur0011_13840 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228859409|gb|EEN03838.1| hypothetical protein bthur0014_14460 [Bacillus thuringiensis IBL
4222]
Length = 381
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 151 ATLTIDASGVGLHKRGYRMDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 210
Query: 330 SL 331
+L
Sbjct: 211 AL 212
>gi|227890017|ref|ZP_04007822.1| site-specific DNA-methyltransferase [Lactobacillus johnsonii ATCC
33200]
gi|227849461|gb|EEJ59547.1| site-specific DNA-methyltransferase [Lactobacillus johnsonii ATCC
33200]
Length = 374
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 86/220 (39%), Gaps = 60/220 (27%)
Query: 257 DYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGD-V 314
+Y +DI+L + A + L T SL +R VE LK A ++ L +P G
Sbjct: 137 EYPLDIHLHK--DTARLSLDTTGQSLFKRGYRVEHGGAPLKENFAAGLIEL-TPFDGSHP 193
Query: 315 FLDPMCGGGTIPVECSLS------------------------YP-------------HTF 337
F+DPM G GTI +E +L +P H
Sbjct: 194 FIDPMTGSGTIAIEAALRAKNVAPGIWRKFAFDNFDWFDKKLHPELVEEAKAQEKKEHAT 253
Query: 338 FVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVD----GIVTDLP 393
+ DI++ ++ + N HN+G L +Q+ K D IV + P
Sbjct: 254 ILASDIDQSILEIAKVNA-HNAGVLQD--------IKFKQVAVKDFSTDLENGVIVANPP 304
Query: 394 FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA-ILLTSD 432
+GKR+ + +Y E+G+ +RP + LTSD
Sbjct: 305 YGKRLKDREAAEKIYE----EMGQTLRPLTSFSQYYLTSD 340
>gi|30019710|ref|NP_831341.1| methyltransferase [Bacillus cereus ATCC 14579]
gi|29895254|gb|AAP08542.1| Methyltransferase [Bacillus cereus ATCC 14579]
Length = 381
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 151 ATLTIDASGVGLHKRGYRMDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 210
Query: 330 SL 331
+L
Sbjct: 211 AL 212
>gi|423564045|ref|ZP_17540321.1| hypothetical protein II5_03449 [Bacillus cereus MSX-A1]
gi|401197536|gb|EJR04465.1| hypothetical protein II5_03449 [Bacillus cereus MSX-A1]
Length = 379
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 149 ATLTIDASGVGLHKRGYRMDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 208
Query: 330 SL 331
+L
Sbjct: 209 AL 210
>gi|238785947|ref|ZP_04629911.1| hypothetical protein yberc0001_25120 [Yersinia bercovieri ATCC
43970]
gi|238713137|gb|EEQ05185.1| hypothetical protein yberc0001_25120 [Yersinia bercovieri ATCC
43970]
Length = 706
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ ++ + A V L ++ LH+R + LK +A +++ + PG +D
Sbjct: 136 DIRVNVFLQRDMASVALDLSGEGLHQRGYRDLTGQAPLKENLAAAIIQRSGWQPGTPMVD 195
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+ +E ++
Sbjct: 196 PMCGSGTLLIEAAM 209
>gi|381152266|ref|ZP_09864135.1| putative N6-adenine-specific DNA methylase [Methylomicrobium album
BG8]
gi|380884238|gb|EIC30115.1| putative N6-adenine-specific DNA methylase [Methylomicrobium album
BG8]
Length = 736
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 14/102 (13%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNI-TTLKPTIAYNMVRLASPIP 311
+ D DI +N+ ++ A + L ++ SLHRR + I +K +A M+ L S P
Sbjct: 133 IATDRPDIRVNVHLQGQSAQLSLDLSGESLHRRGYRDITIQAPIKENLAAAML-LKSGWP 191
Query: 312 -----GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLV 348
G +DPMCG GT+ +E ++ + GD L+
Sbjct: 192 EIAKAGGTLVDPMCGSGTLLIEAAM-------IAGDFAPGLL 226
>gi|229016915|ref|ZP_04173842.1| Site-specific DNA-methyltransferase [Bacillus cereus AH1273]
gi|229023123|ref|ZP_04179635.1| Site-specific DNA-methyltransferase [Bacillus cereus AH1272]
gi|228738158|gb|EEL88642.1| Site-specific DNA-methyltransferase [Bacillus cereus AH1272]
gi|228744376|gb|EEL94451.1| Site-specific DNA-methyltransferase [Bacillus cereus AH1273]
Length = 381
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 151 ATLTIDASGVGLHKRGYRMDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 210
Query: 330 SL 331
+L
Sbjct: 211 AL 212
>gi|238795880|ref|ZP_04639393.1| hypothetical protein ymoll0001_25520 [Yersinia mollaretii ATCC
43969]
gi|238720343|gb|EEQ12146.1| hypothetical protein ymoll0001_25520 [Yersinia mollaretii ATCC
43969]
Length = 706
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ ++ + A V L ++ LH+R + LK +A +++ + PG +D
Sbjct: 136 DIRVNVFLQRDMASVALDLSGEGLHQRGYRDLTGQAPLKENLAAAIIQRSGWQPGTPMVD 195
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+ +E ++
Sbjct: 196 PMCGSGTLLIEAAM 209
>gi|41615305|ref|NP_963803.1| hypothetical protein NEQ522 [Nanoarchaeum equitans Kin4-M]
gi|40069029|gb|AAR39364.1| NEQ522 [Nanoarchaeum equitans Kin4-M]
Length = 366
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 45/162 (27%)
Query: 288 VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL----------SYPHTF 337
V ++ L PTIA +++RL + G LDP+CG GTIP+E +L Y TF
Sbjct: 157 VYYHPAGLAPTIANSLIRL-TKWNGQSLLDPLCGSGTIPIEAALYLREIPPLYRQYDKTF 215
Query: 338 -----------------------FVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374
+C D K + + N +H + +KVS + N
Sbjct: 216 AYQLNPDIIDEIEQSIKWDRKAKILCFDKFVKHMRGAELNCIH--ARVKDIVKVSKI--N 271
Query: 375 VRQLCFK--PACVDGIVTDLPFGKRVG-----SKSNNFLLYR 409
+ + FK +D I+T+ P+G + K + +L Y+
Sbjct: 272 LEDVDFKLGEKAIDYIITNPPYGIKAADREESEKVHEYLFYQ 313
>gi|383449943|ref|YP_005356664.1| modification methyltransferase [Flavobacterium indicum GPTSA100-9]
gi|380501565|emb|CCG52607.1| Probable modification methyltransferase [Flavobacterium indicum
GPTSA100-9]
Length = 389
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+D D D+ I++ I + V L + SLH R NI + +A ++ L+
Sbjct: 132 IDKDHPDLRIHIHIDRDLCTVSLDTSGASLHHRGYRTATNIAPINEVLAAGILLLSGWDG 191
Query: 312 GDVFLDPMCGGGTIPVECSL 331
FLDPMCG GTI E ++
Sbjct: 192 NAHFLDPMCGSGTILAEATM 211
>gi|317131362|ref|YP_004090676.1| rRNA (guanine-N(2)-)-methyltransferase [Ethanoligenens harbinense
YUAN-3]
gi|315469341|gb|ADU25945.1| rRNA (guanine-N(2)-)-methyltransferase [Ethanoligenens harbinense
YUAN-3]
Length = 375
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 260 IDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDP 318
+ I I + + L + LH+R + N LK T+A +VRL+ P +F DP
Sbjct: 137 VQIRFSIHKDIVDICLDTSGDGLHKRGYRPKSNEAPLKETLAAAIVRLSRPFADKLFCDP 196
Query: 319 MCGGGTIPVECSL 331
MCG GT+ +E ++
Sbjct: 197 MCGSGTLVIEAAM 209
>gi|282165529|ref|YP_003357914.1| tRNA methyltransferase [Methanocella paludicola SANAE]
gi|282157843|dbj|BAI62931.1| tRNA methyltransferase [Methanocella paludicola SANAE]
Length = 343
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 15/107 (14%)
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353
L P I+ +V + S I LDPM G G I VE L V DI +K+ T+
Sbjct: 172 VLMPRISRAIVNM-SRIKNGYMLDPMSGTGGILVEAELISDDIHVVGCDIQKKMAYGTRW 230
Query: 354 NVLHNSGNLNRELKVSPLVCNVRQ----LCFKPACVDGIVTDLPFGK 396
N+ H N + VRQ + K +D +VTD P+G+
Sbjct: 231 NLRHYGKNYD----------VVRQDSLGMAIKDDSIDAMVTDFPYGQ 267
>gi|423392041|ref|ZP_17369267.1| hypothetical protein ICG_03889 [Bacillus cereus BAG1X1-3]
gi|423420391|ref|ZP_17397480.1| hypothetical protein IE3_03863 [Bacillus cereus BAG3X2-1]
gi|401102300|gb|EJQ10287.1| hypothetical protein IE3_03863 [Bacillus cereus BAG3X2-1]
gi|401637874|gb|EJS55627.1| hypothetical protein ICG_03889 [Bacillus cereus BAG1X1-3]
Length = 379
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 149 ATLTIDASGVGLHKRGYRMDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 208
Query: 330 SL 331
+L
Sbjct: 209 AL 210
>gi|229029341|ref|ZP_04185429.1| hypothetical protein bcere0028_14350 [Bacillus cereus AH1271]
gi|228732000|gb|EEL82894.1| hypothetical protein bcere0028_14350 [Bacillus cereus AH1271]
Length = 381
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 151 ATLTIDASGVGLHKRGYRMDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 210
Query: 330 SL 331
+L
Sbjct: 211 AL 212
>gi|423403828|ref|ZP_17381001.1| hypothetical protein ICW_04226 [Bacillus cereus BAG2X1-2]
gi|423475542|ref|ZP_17452257.1| hypothetical protein IEO_01000 [Bacillus cereus BAG6X1-1]
gi|401647972|gb|EJS65575.1| hypothetical protein ICW_04226 [Bacillus cereus BAG2X1-2]
gi|402435412|gb|EJV67446.1| hypothetical protein IEO_01000 [Bacillus cereus BAG6X1-1]
Length = 379
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 149 ATLTIDASGVGLHKRGYRMDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 208
Query: 330 SL 331
+L
Sbjct: 209 AL 210
>gi|429205185|ref|ZP_19196462.1| nucleic acid methyltransferase [Lactobacillus saerimneri 30a]
gi|428146257|gb|EKW98496.1| nucleic acid methyltransferase [Lactobacillus saerimneri 30a]
Length = 377
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 230 HTVTSMES--ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPV--TQTSLHRR 285
H V S++S ++A KL+ Y + L++ N+ +V L + + TSL +R
Sbjct: 104 HHVPSVQSIVKKAIVAKLSAVYHRRTRFPETGAKYPLEVSINKNHVMLTLDTSGTSLFKR 163
Query: 286 NI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
V LK +A ++ LA P F+DP+CG GT+P+E ++
Sbjct: 164 GYRVAKGEAPLKENMAAALILLAHWYPERPFVDPVCGSGTLPIEAAM 210
>gi|451343427|ref|ZP_21912499.1| hypothetical protein HMPREF9943_00724 [Eggerthia catenaformis OT
569 = DSM 20559]
gi|449337790|gb|EMD16946.1| hypothetical protein HMPREF9943_00724 [Eggerthia catenaformis OT
569 = DSM 20559]
Length = 486
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 21/156 (13%)
Query: 283 HRRNIVEFNITTLKPTIAYNMVRLASPIPGDVF---LDPMCGGGTIPVECSLSYPHTFFV 339
+R+ I+ +++P +A +++LA P DV+ LDP CG G +E L P +F +
Sbjct: 308 YRKEIIS---NSMQPYVANTLLQLAKPY-MDVYAKVLDPFCGSGITLIERCLLKPVSFTI 363
Query: 340 CGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPA---CVDGIVTDLPFGK 396
DI K + + N + NL+ + V + C + D I+TD+P
Sbjct: 364 GIDIYAKGLEAAKRNT--RAANLD--------INYVNKDCLRFVNNEMFDEIITDMPTYA 413
Query: 397 RVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432
++ K LY F I K+VR G + TS+
Sbjct: 414 QMKDKKALEYLYDNFFKRIPKLVRSD-GYVFIYTSE 448
>gi|427439092|ref|ZP_18923834.1| site-specific DNA-methyltransferase [Pediococcus lolii NGRI 0510Q]
gi|425788470|dbj|GAC44622.1| site-specific DNA-methyltransferase [Pediococcus lolii NGRI 0510Q]
Length = 376
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 230 HTVTSMES--ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYV--GLPVTQTSLHRR 285
H+V +++ ++A KL + Y W L + L++ ++ +V L T SL +R
Sbjct: 104 HSVPDVQAITKKAIVEKLREVYHWRNQLPETGAKYGLEVSIDKDHVLITLDTTGDSLFKR 163
Query: 286 NIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
+ + LK T+A +V L + +DP CG GTIP+E +L
Sbjct: 164 GYRLYKGSAPLKETMAAALVMLTNWHADKPLVDPFCGSGTIPIEAAL 210
>gi|228990675|ref|ZP_04150640.1| hypothetical protein bpmyx0001_14370 [Bacillus pseudomycoides DSM
12442]
gi|228996772|ref|ZP_04156407.1| hypothetical protein bmyco0003_13580 [Bacillus mycoides Rock3-17]
gi|229004447|ref|ZP_04162189.1| hypothetical protein bmyco0002_14020 [Bacillus mycoides Rock1-4]
gi|228756779|gb|EEM06082.1| hypothetical protein bmyco0002_14020 [Bacillus mycoides Rock1-4]
gi|228762949|gb|EEM11861.1| hypothetical protein bmyco0003_13580 [Bacillus mycoides Rock3-17]
gi|228769201|gb|EEM17799.1| hypothetical protein bpmyx0001_14370 [Bacillus pseudomycoides DSM
12442]
Length = 381
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 151 ATLTIDASGVGLHKRGYRLDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 210
Query: 330 SL 331
+L
Sbjct: 211 AL 212
>gi|399032067|ref|ZP_10731736.1| putative N6-adenine-specific DNA methylase [Flavobacterium sp.
CF136]
gi|398069595|gb|EJL60941.1| putative N6-adenine-specific DNA methylase [Flavobacterium sp.
CF136]
Length = 400
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLD 317
D+ IN+ I ++ V L + SLH+R NI + +A ++ L+ FLD
Sbjct: 152 DLRINVHIDKDQVSVALDTSGNSLHQRGYRTATNIAPINEVLAAGILLLSGWEGQSHFLD 211
Query: 318 PMCGGGTIPVECSL 331
PMCG GT E ++
Sbjct: 212 PMCGSGTFLAEAAM 225
>gi|229102263|ref|ZP_04232972.1| hypothetical protein bcere0019_14240 [Bacillus cereus Rock3-28]
gi|229115107|ref|ZP_04244517.1| hypothetical protein bcere0017_14020 [Bacillus cereus Rock1-3]
gi|228668247|gb|EEL23679.1| hypothetical protein bcere0017_14020 [Bacillus cereus Rock1-3]
gi|228681164|gb|EEL35332.1| hypothetical protein bcere0019_14240 [Bacillus cereus Rock3-28]
Length = 381
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 151 ATLTIDASGVGLHKRGYRMDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 210
Query: 330 SL 331
+L
Sbjct: 211 AL 212
>gi|229160611|ref|ZP_04288606.1| hypothetical protein bcere0009_14030 [Bacillus cereus R309803]
gi|228623021|gb|EEK79852.1| hypothetical protein bcere0009_14030 [Bacillus cereus R309803]
Length = 379
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 149 ATLTIDASGVGLHKRGYRMDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 208
Query: 330 SL 331
+L
Sbjct: 209 AL 210
>gi|305662452|ref|YP_003858740.1| putative RNA methylase [Ignisphaera aggregans DSM 17230]
gi|304377021|gb|ADM26860.1| putative RNA methylase [Ignisphaera aggregans DSM 17230]
Length = 343
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Query: 294 TLKPTIAYNMVRLA--SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKT 351
T+KP +A ++ LA S D LDP CG G I +E L + C DI+ ++VL +
Sbjct: 170 TMKPVLARLLINLAKISTERHDTILDPFCGVGGIAIEACLMGFRVY--CSDIDMRMVLGS 227
Query: 352 QAN-VLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNF 405
+ N + + N+ + ++ + ++ ++ IVTD P+G + +S +
Sbjct: 228 KINSISYKCDNM-----IDIILSDATLSPYRYNVINAIVTDPPYGIQTVPRSQSM 277
>gi|146300250|ref|YP_001194841.1| RNA methylase [Flavobacterium johnsoniae UW101]
gi|146154668|gb|ABQ05522.1| putative RNA methylase [Flavobacterium johnsoniae UW101]
Length = 387
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLD 317
D+ IN+ I ++ V L + +SLH+R NI + +A ++ L+ FLD
Sbjct: 139 DLRINVHIDKDQVSVSLDTSGSSLHQRGYRTATNIAPINEVLAAGILLLSGWDGQTHFLD 198
Query: 318 PMCGGGTIPVECSL 331
PMCG GT E ++
Sbjct: 199 PMCGSGTFLAEAAM 212
>gi|406669594|ref|ZP_11076863.1| hypothetical protein HMPREF9707_00766 [Facklamia ignava CCUG 37419]
gi|405582986|gb|EKB56958.1| hypothetical protein HMPREF9707_00766 [Facklamia ignava CCUG 37419]
Length = 381
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 230 HTVTSMES--ERAFGGKLNDTYF---WLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHR 284
H+V +++ ++A KL D Y +L + DY I + IR + + L + TSL +
Sbjct: 104 HSVPNVQRIVKKAISKKLQDYYHRRQFLPETGDY-YPIEVAIRKDVVRITLDTSGTSLFK 162
Query: 285 RNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
R E LK +A +++L + P DPMCG GTI +E +L
Sbjct: 163 RGYREEKGGAPLKENMAAALIQLTTWYPDRPLYDPMCGSGTILIEAAL 210
>gi|229096151|ref|ZP_04227124.1| hypothetical protein bcere0020_13990 [Bacillus cereus Rock3-29]
gi|407704030|ref|YP_006827615.1| ribosomal-protein-alanine acetyltransferase [Bacillus thuringiensis
MC28]
gi|423380535|ref|ZP_17357819.1| hypothetical protein IC9_03888 [Bacillus cereus BAG1O-2]
gi|423443567|ref|ZP_17420473.1| hypothetical protein IEA_03897 [Bacillus cereus BAG4X2-1]
gi|423446182|ref|ZP_17423061.1| hypothetical protein IEC_00790 [Bacillus cereus BAG5O-1]
gi|423466658|ref|ZP_17443426.1| hypothetical protein IEK_03845 [Bacillus cereus BAG6O-1]
gi|423536055|ref|ZP_17512473.1| hypothetical protein IGI_03887 [Bacillus cereus HuB2-9]
gi|423538701|ref|ZP_17515092.1| hypothetical protein IGK_00793 [Bacillus cereus HuB4-10]
gi|423544939|ref|ZP_17521297.1| hypothetical protein IGO_01374 [Bacillus cereus HuB5-5]
gi|423618193|ref|ZP_17594027.1| hypothetical protein IIO_03519 [Bacillus cereus VD115]
gi|423625355|ref|ZP_17601133.1| hypothetical protein IK3_03953 [Bacillus cereus VD148]
gi|228687111|gb|EEL41016.1| hypothetical protein bcere0020_13990 [Bacillus cereus Rock3-29]
gi|401132262|gb|EJQ39904.1| hypothetical protein IEC_00790 [Bacillus cereus BAG5O-1]
gi|401177285|gb|EJQ84477.1| hypothetical protein IGK_00793 [Bacillus cereus HuB4-10]
gi|401183114|gb|EJQ90231.1| hypothetical protein IGO_01374 [Bacillus cereus HuB5-5]
gi|401253924|gb|EJR60160.1| hypothetical protein IIO_03519 [Bacillus cereus VD115]
gi|401255035|gb|EJR61260.1| hypothetical protein IK3_03953 [Bacillus cereus VD148]
gi|401631287|gb|EJS49084.1| hypothetical protein IC9_03888 [Bacillus cereus BAG1O-2]
gi|402412653|gb|EJV45006.1| hypothetical protein IEA_03897 [Bacillus cereus BAG4X2-1]
gi|402415368|gb|EJV47692.1| hypothetical protein IEK_03845 [Bacillus cereus BAG6O-1]
gi|402461480|gb|EJV93193.1| hypothetical protein IGI_03887 [Bacillus cereus HuB2-9]
gi|407381715|gb|AFU12216.1| Site-specific DNA-methyltransferase [Bacillus thuringiensis MC28]
Length = 379
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 271 AYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
A + + + LH+R ++ LK T+A ++++L + P F+DP CG GTIP+E
Sbjct: 149 ATLTIDASGVGLHKRGYRMDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEA 208
Query: 330 SL 331
+L
Sbjct: 209 AL 210
>gi|51595782|ref|YP_069973.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pseudotuberculosis
IP 32953]
gi|153950189|ref|YP_001401517.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pseudotuberculosis
IP 31758]
gi|81825864|sp|Q66CG1.1|RLMKL_YERPS RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|229560198|sp|A7FJT9.1|RLMKL_YERP3 RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|51589064|emb|CAH20682.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|152961684|gb|ABS49145.1| putative methyltransferase [Yersinia pseudotuberculosis IP 31758]
Length = 706
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ ++ + A V L ++ LH+R + LK +A +++ + PG +D
Sbjct: 136 DIRVNVFLQRDMASVALDLSGEGLHQRGYRDLTGQAPLKENLAAAIIQRSGWQPGTPMVD 195
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+ +E ++
Sbjct: 196 PMCGSGTLLIEAAM 209
>gi|145599549|ref|YP_001163625.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis Pestoides F]
gi|229560201|sp|A4TMZ0.1|RLMKL_YERPP RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|145211245|gb|ABP40652.1| hypothetical protein YPDSF_2277 [Yersinia pestis Pestoides F]
Length = 706
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ ++ + A V L ++ LH+R + LK +A +++ + PG +D
Sbjct: 136 DIRVNVFLQRDMASVALDLSGEGLHQRGYRDLTGQAPLKENLAAAIIQRSGWQPGTPMVD 195
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+ +E ++
Sbjct: 196 PMCGSGTLLIEAAM 209
>gi|432328842|ref|YP_007246986.1| putative DNA modification methylase [Aciduliprofundum sp.
MAR08-339]
gi|432135551|gb|AGB04820.1| putative DNA modification methylase [Aciduliprofundum sp.
MAR08-339]
Length = 307
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353
T+ P +A MV LA GD LDP CG G+I +E L + DI +++ +
Sbjct: 149 TMHPRLARFMVNLARVKKGDKILDPFCGTGSILIEAGLVGMKIY--GSDIELRMIEAART 206
Query: 354 NVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLF 411
N+ L+ EL++ V N+ D IVTD P+G+ S + +Y L+
Sbjct: 207 NL--GKFGLHAELEIKD-VGNIN------GHYDAIVTDPPYGR--SSSTGGEEIYELY 253
>gi|299821680|ref|ZP_07053568.1| site-specific DNA-methyltransferase [Listeria grayi DSM 20601]
gi|299817345|gb|EFI84581.1| site-specific DNA-methyltransferase [Listeria grayi DSM 20601]
Length = 382
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 11/130 (8%)
Query: 213 PEENLLKFRVTCNRVGKHTVTSMES--------ERAFGGKLNDTYFWLVDLDDYDIDINL 264
P EN L GK +++ S ++A +L+D Y L + L
Sbjct: 81 PWENFLPLDANFPVAGKSVKSTLYSVPDCQAIVKKAVVNRLSDKYRRSGRLMETGALFKL 140
Query: 265 QIRY--NEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCG 321
++ +E + L + LH+R LK T+A +V L + P F DP+CG
Sbjct: 141 EVALLKDEVTITLDTSGAGLHKRGYRTAQGAAPLKETMAAALVLLTNWHPDRPFYDPVCG 200
Query: 322 GGTIPVECSL 331
GTIP+E +L
Sbjct: 201 SGTIPIEAAL 210
>gi|365925078|ref|ZP_09447841.1| hypothetical protein LmalK35_04227 [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|420266205|ref|ZP_14768693.1| RNA methyltransferase [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394426098|gb|EJE98989.1| RNA methyltransferase [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 379
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
+ + I ++ + L T +SL +R +E LK +A +V LA P F+DP+C
Sbjct: 140 LEVAINKDKVLLTLDTTGSSLFKRGYRIEKGPAPLKENMAAALVLLAHWYPEMPFVDPVC 199
Query: 321 GGGTIPVECSL 331
G GTIP+E ++
Sbjct: 200 GSGTIPIEAAM 210
>gi|186894863|ref|YP_001871975.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pseudotuberculosis
PB1/+]
gi|229560199|sp|B2JYS1.1|RLMKL_YERPB RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|186697889|gb|ACC88518.1| putative RNA methylase [Yersinia pseudotuberculosis PB1/+]
Length = 706
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ ++ + A V L ++ LH+R + LK +A +++ + PG +D
Sbjct: 136 DIRVNVFLQRDMASVALDLSGEGLHQRGYRDLTGQAPLKENLAAAIIQRSGWQPGTPMVD 195
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+ +E ++
Sbjct: 196 PMCGSGTLLIEAAM 209
>gi|22126629|ref|NP_670052.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis KIM10+]
gi|45441002|ref|NP_992541.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis biovar
Microtus str. 91001]
gi|108806710|ref|YP_650626.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis Antiqua]
gi|108812720|ref|YP_648487.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis Nepal516]
gi|149366675|ref|ZP_01888709.1| hypothetical protein YPE_1910 [Yersinia pestis CA88-4125]
gi|162420288|ref|YP_001606460.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis Angola]
gi|165924470|ref|ZP_02220302.1| putative methyltransferase [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165938952|ref|ZP_02227505.1| putative methyltransferase [Yersinia pestis biovar Orientalis str.
IP275]
gi|166010221|ref|ZP_02231119.1| putative methyltransferase [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166211676|ref|ZP_02237711.1| putative methyltransferase [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167399732|ref|ZP_02305250.1| putative methyltransferase [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167419556|ref|ZP_02311309.1| putative methyltransferase [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167423963|ref|ZP_02315716.1| putative methyltransferase [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|170024866|ref|YP_001721371.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pseudotuberculosis
YPIII]
gi|218928566|ref|YP_002346441.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis CO92]
gi|229841394|ref|ZP_04461553.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229843499|ref|ZP_04463645.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229895874|ref|ZP_04511044.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis Pestoides A]
gi|229903120|ref|ZP_04518233.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis Nepal516]
gi|270486917|ref|ZP_06203991.1| THUMP domain protein [Yersinia pestis KIM D27]
gi|294503405|ref|YP_003567467.1| hypothetical protein YPZ3_1295 [Yersinia pestis Z176003]
gi|384125354|ref|YP_005507968.1| hypothetical protein YPD8_0887 [Yersinia pestis D182038]
gi|384140780|ref|YP_005523482.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis A1122]
gi|384415211|ref|YP_005624573.1| putative methyltransferase [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|420578528|ref|ZP_15073178.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-07]
gi|420594366|ref|ZP_15087487.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-10]
gi|420621571|ref|ZP_15111755.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-15]
gi|420642482|ref|ZP_15130633.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-29]
gi|420647655|ref|ZP_15135355.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-32]
gi|420762282|ref|ZP_15236202.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-71]
gi|420772508|ref|ZP_15245414.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-76]
gi|420788807|ref|ZP_15259812.1| methyltransferase domain protein [Yersinia pestis PY-90]
gi|420799393|ref|ZP_15269348.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-92]
gi|420841738|ref|ZP_15307527.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-101]
gi|421762878|ref|ZP_16199675.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis INS]
gi|122979748|sp|Q1CA41.1|RLMKL_YERPA RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|123246336|sp|Q1CGJ3.1|RLMKL_YERPN RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|123777462|sp|Q7CHK7.1|RLMKL_YERPE RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|229560200|sp|A9R7L5.1|RLMKL_YERPG RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|229560202|sp|B1JQR7.1|RLMKL_YERPY RecName: Full=Ribosomal RNA large subunit methyltransferase K/L;
Includes: RecName: Full=23S rRNA m2G2445
methyltransferase; AltName: Full=rRNA
(guanine-N(2)-)-methyltransferase RlmL; Includes:
RecName: Full=23S rRNA m7G2069 methyltransferase;
AltName: Full=rRNA (guanine-N(7)-)-methyltransferase
RlmK
gi|21959639|gb|AAM86303.1|AE013877_11 putative oxidoreductase [Yersinia pestis KIM10+]
gi|45435861|gb|AAS61418.1| Predicted N6-adenine-specific DNA methylases [Yersinia pestis
biovar Microtus str. 91001]
gi|108776368|gb|ABG18887.1| hypothetical protein YPN_2559 [Yersinia pestis Nepal516]
gi|108778623|gb|ABG12681.1| hypothetical protein YPA_0713 [Yersinia pestis Antiqua]
gi|115347177|emb|CAL20070.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|149291049|gb|EDM41124.1| hypothetical protein YPE_1910 [Yersinia pestis CA88-4125]
gi|162353103|gb|ABX87051.1| putative methyltransferase [Yersinia pestis Angola]
gi|165913099|gb|EDR31723.1| putative methyltransferase [Yersinia pestis biovar Orientalis str.
IP275]
gi|165923530|gb|EDR40662.1| putative methyltransferase [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165990707|gb|EDR43008.1| putative methyltransferase [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166207447|gb|EDR51927.1| putative methyltransferase [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166962297|gb|EDR58318.1| putative methyltransferase [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167050440|gb|EDR61848.1| putative methyltransferase [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167056812|gb|EDR66575.1| putative methyltransferase [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|169751400|gb|ACA68918.1| putative RNA methylase [Yersinia pseudotuberculosis YPIII]
gi|229678890|gb|EEO74993.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis Nepal516]
gi|229689846|gb|EEO81907.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229697760|gb|EEO87807.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229700797|gb|EEO88826.1| 23S rRNA m2G2445 methyltransferase [Yersinia pestis Pestoides A]
gi|262365018|gb|ACY61575.1| hypothetical protein YPD8_0887 [Yersinia pestis D182038]
gi|270335421|gb|EFA46198.1| THUMP domain protein [Yersinia pestis KIM D27]
gi|294353864|gb|ADE64205.1| hypothetical protein YPZ3_1295 [Yersinia pestis Z176003]
gi|320015715|gb|ADV99286.1| putative methyltransferase [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|342855909|gb|AEL74462.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis A1122]
gi|391461201|gb|EIR19827.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-07]
gi|391477711|gb|EIR34706.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-10]
gi|391494369|gb|EIR49603.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-15]
gi|391524612|gb|EIR76817.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-29]
gi|391528332|gb|EIR80161.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-32]
gi|391639937|gb|EIS78549.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-71]
gi|391652047|gb|EIS89146.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-76]
gi|391664924|gb|EIT00559.1| methyltransferase domain protein [Yersinia pestis PY-90]
gi|391684496|gb|EIT18158.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-92]
gi|391718201|gb|EIT48468.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-101]
gi|411177084|gb|EKS47099.1| 23S rRNA m(2)G2445 methyltransferase [Yersinia pestis INS]
Length = 706
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ ++ + A V L ++ LH+R + LK +A +++ + PG +D
Sbjct: 136 DIRVNVFLQRDMASVALDLSGEGLHQRGYRDLTGQAPLKENLAAAIIQRSGWQPGTPMVD 195
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+ +E ++
Sbjct: 196 PMCGSGTLLIEAAM 209
>gi|297570511|ref|YP_003691855.1| RNA methylase [Desulfurivibrio alkaliphilus AHT2]
gi|296926426|gb|ADH87236.1| putative RNA methylase [Desulfurivibrio alkaliphilus AHT2]
Length = 383
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 59/142 (41%), Gaps = 23/142 (16%)
Query: 207 KTNFTNPEENLLKF--------RVTCNRVGKHTVTSM--------ESERAFGGKLNDTYF 250
KT P E LL RV+ +RVG ++ ++ FGG+ +
Sbjct: 84 KTALALPWEKLLGVAQSFMINARVSDSRVGHSRYAALCLKDAIVDRFQQQFGGRPD---- 139
Query: 251 WLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIV-EFNITTLKPTIAYNMVRLASP 309
VD D+ +L IR N A + L + SLHRR E ++ T+A +V +
Sbjct: 140 --VDRQQPDLVFDLHIRRNRAVISLDLAGESLHRRGYRRESGEAPIQETLAAALVDFSGW 197
Query: 310 IPGDVFLDPMCGGGTIPVECSL 331
+DP CG GTI E L
Sbjct: 198 DGTRPLVDPFCGSGTILAEALL 219
>gi|384121852|ref|YP_005504472.1| hypothetical protein YPD4_1261 [Yersinia pestis D106004]
gi|420546131|ref|ZP_15044161.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-01]
gi|420551438|ref|ZP_15048914.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-02]
gi|420556982|ref|ZP_15053804.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-03]
gi|420562530|ref|ZP_15058682.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-04]
gi|420567542|ref|ZP_15063220.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-05]
gi|420573206|ref|ZP_15068357.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-06]
gi|420583892|ref|ZP_15078053.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-08]
gi|420589042|ref|ZP_15082692.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-09]
gi|420600044|ref|ZP_15092559.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-11]
gi|420605515|ref|ZP_15097458.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-12]
gi|420610869|ref|ZP_15102296.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-13]
gi|420616168|ref|ZP_15106990.1| methyltransferase domain protein [Yersinia pestis PY-14]
gi|420626618|ref|ZP_15116333.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-16]
gi|420631815|ref|ZP_15121029.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-19]
gi|420636930|ref|ZP_15125607.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-25]
gi|420653297|ref|ZP_15140419.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-34]
gi|420658820|ref|ZP_15145386.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-36]
gi|420664118|ref|ZP_15150126.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-42]
gi|420669087|ref|ZP_15154631.1| methyltransferase domain protein [Yersinia pestis PY-45]
gi|420674400|ref|ZP_15159469.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-46]
gi|420679957|ref|ZP_15164501.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-47]
gi|420685220|ref|ZP_15169214.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-48]
gi|420690400|ref|ZP_15173800.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-52]
gi|420696184|ref|ZP_15178869.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-53]
gi|420701614|ref|ZP_15183475.1| methyltransferase domain protein [Yersinia pestis PY-54]
gi|420707554|ref|ZP_15188344.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-55]
gi|420712894|ref|ZP_15193146.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-56]
gi|420718304|ref|ZP_15197882.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-58]
gi|420723882|ref|ZP_15202693.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-59]
gi|420729502|ref|ZP_15207708.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-60]
gi|420734555|ref|ZP_15212272.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-61]
gi|420740023|ref|ZP_15217197.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-63]
gi|420745440|ref|ZP_15221927.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-64]
gi|420751160|ref|ZP_15226856.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-65]
gi|420756498|ref|ZP_15231444.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-66]
gi|420767537|ref|ZP_15240944.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-72]
gi|420777953|ref|ZP_15250264.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-88]
gi|420783478|ref|ZP_15255108.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-89]
gi|420794275|ref|ZP_15264748.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-91]
gi|420804739|ref|ZP_15274164.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-93]
gi|420810016|ref|ZP_15278936.1| methyltransferase domain protein [Yersinia pestis PY-94]
gi|420815698|ref|ZP_15284035.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-95]
gi|420820879|ref|ZP_15288717.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-96]
gi|420825966|ref|ZP_15293273.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-98]
gi|420831738|ref|ZP_15298490.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-99]
gi|420836586|ref|ZP_15302861.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-100]
gi|420847358|ref|ZP_15312598.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-102]
gi|420852802|ref|ZP_15317373.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-103]
gi|420858283|ref|ZP_15322053.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-113]
gi|262361448|gb|ACY58169.1| hypothetical protein YPD4_1261 [Yersinia pestis D106004]
gi|391428844|gb|EIQ90762.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-01]
gi|391430160|gb|EIQ91907.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-02]
gi|391431583|gb|EIQ93132.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-03]
gi|391444586|gb|EIR04791.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-04]
gi|391445796|gb|EIR05891.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-05]
gi|391449300|gb|EIR09037.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-06]
gi|391462305|gb|EIR20831.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-08]
gi|391464398|gb|EIR22686.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-09]
gi|391479038|gb|EIR35879.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-12]
gi|391479106|gb|EIR35938.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-11]
gi|391493097|gb|EIR48480.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-13]
gi|391496871|gb|EIR51780.1| methyltransferase domain protein [Yersinia pestis PY-14]
gi|391509148|gb|EIR62802.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-16]
gi|391509714|gb|EIR63307.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-19]
gi|391514045|gb|EIR67194.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-25]
gi|391527180|gb|EIR79117.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-34]
gi|391540584|gb|EIR91200.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-36]
gi|391542886|gb|EIR93277.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-42]
gi|391544053|gb|EIR94312.1| methyltransferase domain protein [Yersinia pestis PY-45]
gi|391557994|gb|EIS06922.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-46]
gi|391558499|gb|EIS07374.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-47]
gi|391559763|gb|EIS08480.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-48]
gi|391573220|gb|EIS20315.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-52]
gi|391573748|gb|EIS20745.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-53]
gi|391584896|gb|EIS30367.1| methyltransferase domain protein [Yersinia pestis PY-54]
gi|391585607|gb|EIS30996.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-55]
gi|391589149|gb|EIS34083.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-56]
gi|391602391|gb|EIS45683.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-60]
gi|391602402|gb|EIS45693.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-58]
gi|391604185|gb|EIS47229.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-59]
gi|391616832|gb|EIS58442.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-61]
gi|391617625|gb|EIS59148.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-63]
gi|391623728|gb|EIS64465.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-64]
gi|391628706|gb|EIS68736.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-65]
gi|391641425|gb|EIS79839.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-66]
gi|391642349|gb|EIS80638.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-72]
gi|391657414|gb|EIS93922.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-88]
gi|391662446|gb|EIS98375.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-89]
gi|391671575|gb|EIT06496.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-91]
gi|391683036|gb|EIT16847.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-93]
gi|391685168|gb|EIT18734.1| methyltransferase domain protein [Yersinia pestis PY-94]
gi|391696955|gb|EIT29390.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-95]
gi|391700524|gb|EIT32612.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-96]
gi|391701837|gb|EIT33791.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-98]
gi|391711066|gb|EIT42064.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-99]
gi|391717702|gb|EIT48026.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-100]
gi|391728824|gb|EIT57880.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-102]
gi|391732016|gb|EIT60641.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-103]
gi|391736025|gb|EIT64088.1| ribosomal RNA large subunit methyltransferase L [Yersinia pestis
PY-113]
Length = 663
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ ++ + A V L ++ LH+R + LK +A +++ + PG +D
Sbjct: 93 DIRVNVFLQRDMASVALDLSGEGLHQRGYRDLTGQAPLKENLAAAIIQRSGWQPGTPMVD 152
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+ +E ++
Sbjct: 153 PMCGSGTLLIEAAM 166
>gi|448683326|ref|ZP_21692215.1| RNA methylase [Haloarcula japonica DSM 6131]
gi|445783999|gb|EMA34821.1| RNA methylase [Haloarcula japonica DSM 6131]
Length = 361
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 64/158 (40%), Gaps = 22/158 (13%)
Query: 232 VTSMESERAFGGKLNDTYFWLVDLDD---------YDIDINLQIRYNEAYVGLPVTQTSL 282
+ + ++ER GG L D F VDLDD D D + + EA L
Sbjct: 111 IDTQQAERMLGGVLTDRGF-PVDLDDPDHVLYAYLSDPDGDEEGGTGEACCALGWLAAES 169
Query: 283 HR----RNIVE---FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH 335
R R E F ++ P A +V +A P LDPMCG G + +E L
Sbjct: 170 VRDFGGRQPTERPFFQPGSMDPLEARALVNIAGAGPDATILDPMCGTGGLLLEAGLI--G 227
Query: 336 TFFVCGDINEKLVLKTQANV---LHNSGNLNRELKVSP 370
V GD K+V T+ N+ L G+ NR+ P
Sbjct: 228 ADVVGGDAQTKMVHGTRENLQYALDGDGHPNRDAYPEP 265
>gi|310779777|ref|YP_003968109.1| RNA methylase [Ilyobacter polytropus DSM 2926]
gi|309749100|gb|ADO83761.1| putative RNA methylase [Ilyobacter polytropus DSM 2926]
Length = 383
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 273 VGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDV-FLDPMCGGGTIPVECS 330
V + + LH+R E N +K T+A +V+++ G++ LDPMCG GTIP+E +
Sbjct: 152 VMVDTSGEGLHKRGYRAEINQAPMKETLAAALVKISRWRGGELSLLDPMCGTGTIPIEAA 211
Query: 331 L 331
+
Sbjct: 212 M 212
>gi|210622662|ref|ZP_03293302.1| hypothetical protein CLOHIR_01250 [Clostridium hiranonis DSM 13275]
gi|210154100|gb|EEA85106.1| hypothetical protein CLOHIR_01250 [Clostridium hiranonis DSM 13275]
Length = 386
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I + I N+ + + T +LH+R E N ++ T+A ++ L PG +DPMC
Sbjct: 142 IYVFIHKNKVTLSIDTTGDALHKRGYREKANKAPIRETLAAGIMYLTPWRPGRTLVDPMC 201
Query: 321 GGGTIPVECSL 331
G GTI +E ++
Sbjct: 202 GSGTILIEAAM 212
>gi|307243528|ref|ZP_07525676.1| THUMP domain protein [Peptostreptococcus stomatis DSM 17678]
gi|306493084|gb|EFM65089.1| THUMP domain protein [Peptostreptococcus stomatis DSM 17678]
Length = 382
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 273 VGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
+ + T +LH+R E N ++ T+A +V L PG +DPMCG GTI +E ++
Sbjct: 154 LSIDTTGLALHKRGYREVSNKAPIRETLAAGLVYLTPWRPGRTLVDPMCGSGTILIEAAM 213
>gi|365121609|ref|ZP_09338526.1| hypothetical protein HMPREF1033_01872 [Tannerella sp.
6_1_58FAA_CT1]
gi|363645327|gb|EHL84596.1| hypothetical protein HMPREF1033_01872 [Tannerella sp.
6_1_58FAA_CT1]
Length = 516
Score = 45.1 bits (105), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 45/188 (23%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
V L++ D+ +NL I +N + L + SLH+R V + +A ++ L S
Sbjct: 134 VRLNNADLILNLHIAHNTCTLSLDSSGESLHKRGYRVAQTEAPINEVLAAGLI-LKSGWK 192
Query: 312 GDV-FLDPMCGGGTIPVECSLSYPHT----------FFVCGDINEKLVLKTQANVLHNSG 360
G+ F+DPMCG GTI +E +L +T F D +E+L + L+N
Sbjct: 193 GEKNFIDPMCGSGTILIEAALIATNTAPGIYRKDFAFERWNDYDEELF-----DSLYNDD 247
Query: 361 NLNRELK-------VSPLVCNVRQ-------------LCFKP------ACVDGI-VTDLP 393
+ +E +SP + + L KP A +GI +T+ P
Sbjct: 248 SNEKEFNFKIYGSDISPKAIAIARENIKSAGMAKYIDLQVKPFQQYTEAPENGILITNPP 307
Query: 394 FGKRVGSK 401
+G+R+ SK
Sbjct: 308 YGERISSK 315
>gi|381188553|ref|ZP_09896114.1| methyltransferase [Flavobacterium frigoris PS1]
gi|379649530|gb|EIA08104.1| methyltransferase [Flavobacterium frigoris PS1]
Length = 399
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLD 317
D+ IN+ I ++ V L + SLH+R NI + +A ++ L+ FLD
Sbjct: 139 DLRINIHIDRDQVSVALDTSGNSLHQRGYRTATNIAPINEVLAAGVLLLSGWDGQGDFLD 198
Query: 318 PMCGGGTIPVECSL 331
PMCG GT E ++
Sbjct: 199 PMCGSGTFLAEAAM 212
>gi|415885259|ref|ZP_11547187.1| putative N6-adenine-specific DNA methylase [Bacillus methanolicus
MGA3]
gi|387590928|gb|EIJ83247.1| putative N6-adenine-specific DNA methylase [Bacillus methanolicus
MGA3]
Length = 379
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I + + + A + + + + LHRR LK T+A +V L + P F+DP C
Sbjct: 140 IEVALHKDIATLTIDTSGSGLHRRGYRAGQGEAPLKETLAAALVMLTNWTPERPFVDPFC 199
Query: 321 GGGTIPVECSL 331
G GTIP+E +L
Sbjct: 200 GSGTIPIEAAL 210
>gi|423102286|ref|ZP_17089988.1| ribosomal RNA large subunit methyltransferase L [Klebsiella oxytoca
10-5242]
gi|376389869|gb|EHT02558.1| ribosomal RNA large subunit methyltransferase L [Klebsiella oxytoca
10-5242]
Length = 701
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+ + A++ L ++ LH R + + +K +A +V +
Sbjct: 130 VDRENPDLRINVWLNKETAHISLDLSGEGLHLRGYRDGTGMAPIKENLAAAIVMRSGWAA 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|282879702|ref|ZP_06288432.1| THUMP domain protein [Prevotella timonensis CRIS 5C-B1]
gi|281306371|gb|EFA98401.1| THUMP domain protein [Prevotella timonensis CRIS 5C-B1]
Length = 493
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIP 311
+ + + DI +++ I ++A + L + SLHRR + ++ L +A M+ +
Sbjct: 131 ISVSNPDIRLHIHIAEDDATLSLDSSGESLHRRGYRQESVEAPLNEVLAAGMIMMTGWKG 190
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GT+ +E ++
Sbjct: 191 ETDFIDPMCGSGTLLIEAAM 210
>gi|84490107|ref|YP_448339.1| DNA modification methylase [Methanosphaera stadtmanae DSM 3091]
gi|84373426|gb|ABC57696.1| predicted DNA modification methylase [Methanosphaera stadtmanae DSM
3091]
Length = 356
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 89/225 (39%), Gaps = 33/225 (14%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQ 279
F+V R+G V + ER GG + V LDD I L I N V +
Sbjct: 93 FKVRVKRMGGGDVDKDKIERNIGGFIKQKSNMPVSLDDAICTIKL-IYTNPEQVVNEYKE 151
Query: 280 TSLHRRN-------IVE----------------FNITTLKPTIAYNMVRLASPIPGDVFL 316
S+ + N I+E F+ ++ P +A MV LA D L
Sbjct: 152 VSIKKYNKVIISQLIIEQDKKHFFDNKPHKRPYFHPGSMSPKLALCMVNLAHVHNNDTVL 211
Query: 317 DPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376
DP CG G I +E + +T + DI + + ++ N+ H + K+ + +VR
Sbjct: 212 DPFCGTGGILIEAGIL--NTKLIGSDIEKHMYEGSKLNLAHEG---FEDFKI--MWEDVR 264
Query: 377 QLCFKPACVDGIVTDLPFGKRVGSKSNNFL-LYRLFLIEIGKIVR 420
+L VD + D P+G +N LY LI I ++
Sbjct: 265 KLELD-ETVDAVAMDPPYGISTTLGGDNTKELYHEALIAISNYLK 308
>gi|388257668|ref|ZP_10134847.1| ribosomal RNA large subunit methyltransferase L [Cellvibrio sp. BR]
gi|387938835|gb|EIK45387.1| ribosomal RNA large subunit methyltransferase L [Cellvibrio sp. BR]
Length = 756
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 257 DYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYN-MVRLASP---IP 311
D D+ +N+++ ++ V + ++ SLHRR ++ +K +A ++R P
Sbjct: 139 DPDLRVNVRLSKSKVIVSIDLSGDSLHRRGYRIKQGSAPMKENLAAGILIRAGWPEIAAQ 198
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GTI +E +L
Sbjct: 199 GGALLDPMCGSGTILIEAAL 218
>gi|158319462|ref|YP_001511969.1| putative RNA methylase [Alkaliphilus oremlandii OhILAs]
gi|158139661|gb|ABW17973.1| putative RNA methylase [Alkaliphilus oremlandii OhILAs]
Length = 380
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 34/167 (20%)
Query: 277 VTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH 335
+ LH+R N LK T+A ++ L+ P V +DP CG GTIP+E +L +
Sbjct: 155 TSGAGLHKRGYRTLSNRAPLKETLAAALISLSYWNPDRVLIDPFCGSGTIPIEAALIGKN 214
Query: 336 TF------FVCGDIN--EKLVLKTQANVLHNSGNLNRELK-----VSPLVCNVRQLCFKP 382
FV D K + + H+ +R L+ V V ++ + +
Sbjct: 215 IAPGINRNFVSEDWGLIPKELWRNARKETHDLAKYDRPLRIYGSDVDGEVLSIARYHARE 274
Query: 383 ACVDG--------------------IVTDLPFGKRVGSKSNNFLLYR 409
A VD I+T+ P+G+R+G + LY+
Sbjct: 275 AGVDEDVHFQKLGVADLRSRFEYGCIITNPPYGERIGERDEVEELYK 321
>gi|347536801|ref|YP_004844226.1| putative modification methyltransferase [Flavobacterium
branchiophilum FL-15]
gi|345529959|emb|CCB69989.1| Probable modification methyltransferase [Flavobacterium
branchiophilum FL-15]
Length = 387
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLD 317
D+ IN+ I ++ V L + SLH+R NI + +A ++ L+ FLD
Sbjct: 138 DLRINIHIAKDQVSVALDTSGQSLHQRGYRTATNIAPINEVLAAGILLLSGWNGQSDFLD 197
Query: 318 PMCGGGTIPVECSL 331
PMCG GT E ++
Sbjct: 198 PMCGSGTFLAEAAM 211
>gi|304317708|ref|YP_003852853.1| rRNA (guanine-N(2)-)-methyltransferase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779210|gb|ADL69769.1| rRNA (guanine-N(2)-)-methyltransferase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 379
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I + N+A + + + LH+R V NI L+ T+A M+ L+ +DP C
Sbjct: 140 IKFSLMKNKAVLMIDTSGEGLHKRGYRVMSNIAPLRETLASAMIMLSDWRYDRPLIDPFC 199
Query: 321 GGGTIPVECSL 331
G GTIP+E +L
Sbjct: 200 GSGTIPIEAAL 210
>gi|189461698|ref|ZP_03010483.1| hypothetical protein BACCOP_02362 [Bacteroides coprocola DSM 17136]
gi|189431585|gb|EDV00570.1| THUMP domain protein [Bacteroides coprocola DSM 17136]
Length = 468
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNI-TTLKPTIAYNMVRLASPIP 311
V + + D+ IN+ + + + L + SLHRR + + L +A M+ L +
Sbjct: 133 VRISNPDLAINIHVAEDRCTLSLDSSGESLHRRGYRQEQVEAPLNEVLAAGMI-LMTGWR 191
Query: 312 GDV-FLDPMCGGGTIPVECSL 331
G+ +DPMCG GTIP+E +L
Sbjct: 192 GECDLIDPMCGSGTIPIEAAL 212
>gi|402842520|ref|ZP_10890932.1| S-adenosylmethionine-dependent methyltransferase [Klebsiella sp.
OBRC7]
gi|402279462|gb|EJU28247.1| S-adenosylmethionine-dependent methyltransferase [Klebsiella sp.
OBRC7]
Length = 701
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+ + A++ L ++ LH R + + +K +A +V +
Sbjct: 130 VDRENPDLRINVWLNKETAHISLDLSGEGLHLRGYRDGTGMAPIKENLAAAIVMRSGWAA 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|78213763|ref|YP_382542.1| RNA methylase [Synechococcus sp. CC9605]
gi|78198222|gb|ABB35987.1| putative RNA methylase family UPF0020 [Synechococcus sp. CC9605]
Length = 380
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+DLD+ D+ ++L + EA + L + SLHRR LK +A ++RL
Sbjct: 136 IDLDNPDLSLHLHLGRGEAQLSLDGSGGSLHRRGYRAAMGAAPLKENLAAGLIRLTGWDG 195
Query: 312 GDVFLDPMCGGG 323
+ +DP CG G
Sbjct: 196 SEPLVDPCCGSG 207
>gi|282891997|ref|ZP_06300474.1| hypothetical protein pah_c205o011 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338174776|ref|YP_004651586.1| ribosomal RNA large subunit methyltransferase L [Parachlamydia
acanthamoebae UV-7]
gi|281498039|gb|EFB40381.1| hypothetical protein pah_c205o011 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336479134|emb|CCB85732.1| ribosomal RNA large subunit methyltransferase L [Parachlamydia
acanthamoebae UV-7]
Length = 383
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNI-TTLKPTIAYNMVRLASPIP 311
+D+ + DI +NL I+ N A + L + LH+R ++ ++ +A ++RLA+
Sbjct: 138 IDVKNPDIQLNLFIQGNTAILSLDTSGAPLHKRGYRLDSVEAPMQENLAAAILRLANYKK 197
Query: 312 GDVFLDPMCGGGTIPVECSLSYPHT 336
++ DP CG GT+ +E +L T
Sbjct: 198 EEIMCDPCCGSGTLLIEAALMASQT 222
>gi|375260021|ref|YP_005019191.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella oxytoca KCTC 1686]
gi|397657098|ref|YP_006497800.1| 2-phospho-D-glycerate hydrolyase [Klebsiella oxytoca E718]
gi|365909499|gb|AEX04952.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella oxytoca KCTC 1686]
gi|394345601|gb|AFN31722.1| 23S rRNA (guanine-N-2-) -methyltransferase rlmL [Klebsiella oxytoca
E718]
Length = 701
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+ + A++ L ++ LH R + + +K +A +V +
Sbjct: 130 VDRENPDLRINVWLNKETAHISLDLSGEGLHLRGYRDGTGMAPIKENLAAAIVMRSGWAA 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|229818719|ref|YP_002880245.1| RNA methylase [Beutenbergia cavernae DSM 12333]
gi|229564632|gb|ACQ78483.1| putative RNA methylase [Beutenbergia cavernae DSM 12333]
Length = 348
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 10/142 (7%)
Query: 294 TLKPTIAYNMVRLASPIPGD-VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQ 352
+L P IA +V A P D V LDP G G + V + P +C D+
Sbjct: 164 SLAPEIAELVVNAAGPAGADDVVLDPFAGSGAL-VAARVRRPFRKAICSDVG------YA 216
Query: 353 ANVLHNSGNLNRELKVSPLVCNVRQLCFKP-ACVDGIVTDLPFGKRVGSKSNNFLLYRLF 411
+ L R +V L + R L P VD +VTD P+G+ + + +
Sbjct: 217 DGTVRRLPELARAARVVQLPEDARVLASVPDGSVDVVVTDPPWGEFESGPAPDEEFFAAT 276
Query: 412 LIEIGKIVRPQIGRAILLTSDR 433
L + +++RP+ GR +L S R
Sbjct: 277 LTSMRRVLRPR-GRLAMLLSRR 297
>gi|218437884|ref|YP_002376213.1| RNA methylase [Cyanothece sp. PCC 7424]
gi|218170612|gb|ACK69345.1| putative RNA methylase [Cyanothece sp. PCC 7424]
Length = 375
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 35/192 (18%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD+ DI IN I N+ + L + SLHRR + LK T+A ++ LA
Sbjct: 131 VDVKQPDILINAHIYQNDCILSLDSSGESLHRRGYRPAVGLAPLKETLAAALLDLAQWNS 190
Query: 312 GDVFLDPMCGGGTIPVECSLSYPHT----------FFVCGDINEKL-------VLKTQAN 354
F DP+CG GT+P+E +L + F D ++ L ++Q +
Sbjct: 191 NLSFFDPLCGSGTLPLEATLKALNIAPGLFRQRFGFQTWLDFDQSLWEDLIKEAKESQLS 250
Query: 355 VL-------HNSGNLNRELKVSPLVCNV-RQLCF--------KPACVDG-IVTDLPFGKR 397
VL S ++ ++ + + C + RQ+ F +P +G I+ + P+GKR
Sbjct: 251 VLPAPIIGSDRSDDMIKQAQSNAQSCGIDRQVQFIQRELSEVEPLTSEGIIICNPPYGKR 310
Query: 398 VGSKSNNFLLYR 409
+G+ LY+
Sbjct: 311 LGNSEELGALYK 322
>gi|433655935|ref|YP_007299643.1| putative N6-adenine-specific DNA methylase [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433294124|gb|AGB19946.1| putative N6-adenine-specific DNA methylase [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 379
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
I + N+A + + + LH+R V NI L+ T+A M+ L+ +DP C
Sbjct: 140 IKFSLMKNKAVLMIDTSGEGLHKRGYRVMSNIAPLRETLASAMIMLSDWRYDRPLIDPFC 199
Query: 321 GGGTIPVECSL 331
G GTIP+E +L
Sbjct: 200 GSGTIPIEAAL 210
>gi|387129010|ref|YP_006291900.1| 2-phospho-D-glycerate hydrolyase [Methylophaga sp. JAM7]
gi|386270299|gb|AFJ01213.1| 23S rRNA (guanine-N-2-) -methyltransferase rlmL [Methylophaga sp.
JAM7]
Length = 744
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPT------IAYNMVR 305
VDL D+ +N+ +++N+A V + ++ SLH+R V+ I LK T +A + +
Sbjct: 134 VDLGQPDLRVNVYVKHNQAIVSIDLSGDSLHKRGYRVQQTIAPLKETLAAAILLAADWPK 193
Query: 306 LASPIPGDVFLDPMCGGGTIPVECSL 331
LA G +DPMCG GT +E ++
Sbjct: 194 LAR--QGWGLIDPMCGSGTFLIEAAM 217
>gi|397167812|ref|ZP_10491252.1| ribosomal RNA large subunit methyltransferase L [Enterobacter
radicincitans DSM 16656]
gi|396090630|gb|EJI88200.1| ribosomal RNA large subunit methyltransferase L [Enterobacter
radicincitans DSM 16656]
Length = 702
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIPGDVFLD 317
D+ IN+ + A + L ++ LH R + I +K +A +V + PG LD
Sbjct: 136 DLRINVWLNQETANISLDLSGEGLHLRGYRDRTGIAPIKENLAAAIVMRSGWQPGTPLLD 195
Query: 318 PMCGGGTIPVECSLS 332
PMCG GT+ +E +++
Sbjct: 196 PMCGSGTLLIEAAMA 210
>gi|312143636|ref|YP_003995082.1| rRNA (guanine-N(2)-)-methyltransferase [Halanaerobium
hydrogeniformans]
gi|311904287|gb|ADQ14728.1| rRNA (guanine-N(2)-)-methyltransferase [Halanaerobium
hydrogeniformans]
Length = 379
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 223 TCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSL 282
TC V K V E K D +F D Y I+I L ++A + + + T L
Sbjct: 109 TCQSVVKKAVVDSMKE-----KYGDQWF-PEDGPLYPIEIALYK--DQALLTIDSSGTGL 160
Query: 283 HRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
H+R + +T ++ TIA M+ L+ + +DP CG GTI +E ++
Sbjct: 161 HKRGYRDLTVTAPIQETIAAGMIYLSRWDKDRILIDPFCGSGTILIEAAM 210
>gi|365960439|ref|YP_004942006.1| putative N6-adenine-specific DNA methylase [Flavobacterium
columnare ATCC 49512]
gi|365737120|gb|AEW86213.1| putative N6-adenine-specific DNA methylase [Flavobacterium
columnare ATCC 49512]
Length = 388
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+D + DI IN+ I V L + SLH R NI + +A ++ L+
Sbjct: 133 IDKERPDIRINVHIDKENCSVSLDSSGDSLHHRGYKTATNIAPINEVLAAGILLLSGWDG 192
Query: 312 GDVFLDPMCGGGTIPVECSL 331
F+DPMCG GTI E ++
Sbjct: 193 SGHFMDPMCGSGTILAEAAM 212
>gi|163755037|ref|ZP_02162158.1| putative N6-adenine-specific DNA methylase [Kordia algicida OT-1]
gi|161325104|gb|EDP96432.1| putative N6-adenine-specific DNA methylase [Kordia algicida OT-1]
Length = 391
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VDL + I++ I+ N+ + L + SLH+R NI + +A +V ++
Sbjct: 134 VDLKFPTLRIHVHIQNNDCTISLDSSGGSLHKRGYKTATNIAPINEVLAAGLVMMSGWDG 193
Query: 312 GDVFLDPMCGGGTIPVECSL 331
LDPMCG GTI +E ++
Sbjct: 194 QCDLLDPMCGSGTIAIEAAM 213
>gi|147921003|ref|YP_685187.1| N2-methylguanosine tRNA methyltransferase [Methanocella arvoryzae
MRE50]
gi|110620583|emb|CAJ35861.1| N2-methylguanosine tRNA methyltransferase [Methanocella arvoryzae
MRE50]
Length = 338
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 20/220 (9%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQ 279
F V +RV + S ER G + + V L++ D+ + G + +
Sbjct: 93 FVVRVSRVKNYGGISATFERKLGAAIWRRGY-PVSLENPDVMFRAIVTEGVCIFGRRLAE 151
Query: 280 TSLHRRNIVE--------FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
T RR E F L P I+ +V L G + LDP G G VE L
Sbjct: 152 TD--RRGFDERAPLKKPFFLPGVLMPRISRAVVNLTRISEGWI-LDPFSGTGGTLVEAGL 208
Query: 332 SYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTD 391
P V DI +K+V T+ N+ H N + + S ++ K VD +VTD
Sbjct: 209 ISPDIHVVGCDIQKKMVYGTRKNLRHYGTNYDVIWEDS------LRMGIKDDSVDAMVTD 262
Query: 392 LPFGKRVGSKSNNF-LLYRLFLIEIGKIVRPQIGRAILLT 430
P+G+ + + Y L E+ ++++P RA++++
Sbjct: 263 FPYGQSTPIAAASIDAFYTGALREMFRVLKPGC-RAVVVS 301
>gi|423128388|ref|ZP_17116067.1| ribosomal RNA large subunit methyltransferase L [Klebsiella oxytoca
10-5250]
gi|376393744|gb|EHT06400.1| ribosomal RNA large subunit methyltransferase L [Klebsiella oxytoca
10-5250]
Length = 701
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+ + A++ L ++ LH R + + +K +A +V +
Sbjct: 130 VDRENPDLRINVWLNKETAHISLDLSGEGLHLRGYRDGTGMAPIKENLAAAIVMRSGWAT 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|197116875|ref|YP_002137302.1| 23S rRNA (2-N-methyl-G2445)-methyltransferase [Geobacter
bemidjiensis Bem]
gi|197086235|gb|ACH37506.1| 23S rRNA (2-N-methyl-G2445)-methyltransferase, putative [Geobacter
bemidjiensis Bem]
Length = 376
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 241 FGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTI 299
FG + N VD D D+ +NL++ N V L + T L RR ++ + LK +
Sbjct: 126 FGSRPN------VDTKDPDLRVNLRLFRNRCTVSLDCSGTPLDRRGYRLDRHEAPLKENL 179
Query: 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
A +V L+ +DPMCG GTI +E ++
Sbjct: 180 AAALVELSGWDATTPLIDPMCGTGTIVIEAAM 211
>gi|298208280|ref|YP_003716459.1| N6-adenine-specific DNA methylase [Croceibacter atlanticus
HTCC2559]
gi|83848201|gb|EAP86071.1| putative N6-adenine-specific DNA methylase [Croceibacter atlanticus
HTCC2559]
Length = 381
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIP 311
VDLD + IN+ I V L + SLH+R E+ NI + +A ++ L S
Sbjct: 127 VDLDHPTLRINIHIDQTNCTVSLDSSGDSLHKRGYREYTNIAPINEILAAGLL-LKSGWD 185
Query: 312 G-DVFLDPMCGGGTIPVECSL 331
G F DPMCG GT+ +E ++
Sbjct: 186 GLSHFHDPMCGSGTMLIEAAM 206
>gi|289670042|ref|ZP_06491117.1| 23S rRNA m(2)G2445 methyltransferase, partial [Xanthomonas
campestris pv. musacearum NCPPB 4381]
Length = 214
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYN-MVRLASP- 309
VD++ D+ +NL +R A + + + LHRR + N LK +A ++R P
Sbjct: 129 VDVESPDLRLNLSLRKGRATISVDLGGGPLHRRGWRMAQNEAPLKENLAAAVLMRGGWPR 188
Query: 310 --IPGDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E +L
Sbjct: 189 AYADGGALLDPMCGSGTLLIEGAL 212
>gi|424799058|ref|ZP_18224600.1| 23S rRNA (guanine-N-2-)-methyltransferase rlmL EC 2.1.1.-)
[Cronobacter sakazakii 696]
gi|423234779|emb|CCK06470.1| 23S rRNA (guanine-N-2-)-methyltransferase rlmL [Cronobacter
sakazakii 696]
Length = 705
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + + A + + ++ LH+R + +K +A +V + P
Sbjct: 130 VDREQPDLRINVWLNKDTASIAIDLSGEGLHQRGYRDRTGQAPIKENLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|15679679|ref|NP_276796.1| hypothetical protein MTH1685 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3915120|sp|O27720.1|THII_METTH RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
carrier protein ThiS sulfurtransferase; AltName:
Full=Thiamine biosynthesis protein ThiI; AltName:
Full=tRNA 4-thiouridine synthase
gi|2622815|gb|AAB86157.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 389
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 25/153 (16%)
Query: 146 FNKYNDILRHKKSIRNEI------NIKKESSCETEPQVNNVQIEKGDLQ---NQELKEID 196
+Y ++ S+R NIK SC E + + I D+ ++ K
Sbjct: 9 LARYGEVAIKGPSVRRRFEGKLLHNIKSAFSCRAELRHGRIFIFPEDMDEALDRLSKIFG 68
Query: 197 INSMCSSQNQKTNFTNPEENLLK----------------FRVTCNRVGKHTVTSMESERA 240
I S + +T F + E++L + F + C RVG+H TS E
Sbjct: 69 IVSFSPAVTAETGFDSIEDSLREYIHELRSEGLLTSRTPFAIRCRRVGEHDFTSQEMAAF 128
Query: 241 FGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYV 273
G + VDL + D++I+L+IR +E Y+
Sbjct: 129 AGSVVVGEIGAPVDLGNPDLEIHLEIREDETYI 161
>gi|421727773|ref|ZP_16166932.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella oxytoca M5al]
gi|410371522|gb|EKP26244.1| 23S rRNA m(2)G2445 methyltransferase [Klebsiella oxytoca M5al]
Length = 701
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+ + A++ L ++ LH R + + +K +A +V +
Sbjct: 130 VDRENPDLRINVWLNKETAHISLDLSGEGLHLRGYRDGTGMAPIKENLAAAIVMRSGWAT 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|423107634|ref|ZP_17095329.1| ribosomal RNA large subunit methyltransferase L [Klebsiella oxytoca
10-5243]
gi|423113577|ref|ZP_17101268.1| ribosomal RNA large subunit methyltransferase L [Klebsiella oxytoca
10-5245]
gi|376387846|gb|EHT00549.1| ribosomal RNA large subunit methyltransferase L [Klebsiella oxytoca
10-5243]
gi|376388263|gb|EHT00963.1| ribosomal RNA large subunit methyltransferase L [Klebsiella oxytoca
10-5245]
Length = 701
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+ + A++ L ++ LH R + + +K +A +V +
Sbjct: 130 VDRENPDLRINVWLNKETAHISLDLSGEGLHLRGYRDGTGMAPIKENLAAAIVMRSGWAT 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>gi|335048039|ref|ZP_08541059.1| hypothetical protein HMPREF9126_0983 [Parvimonas sp. oral taxon 110
str. F0139]
gi|333757839|gb|EGL35397.1| hypothetical protein HMPREF9126_0983 [Parvimonas sp. oral taxon 110
str. F0139]
Length = 377
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 17/166 (10%)
Query: 219 KFRVTCNRVGKHTVTSME-----SERAFGGKLNDTYF--WLVDLDDYDIDINLQIRYNEA 271
KF V N + K + S+ ++RA +L + Y W + D I + I + A
Sbjct: 92 KFPVNANSI-KSKLFSLSDIQKITKRAIVDRLKNVYGVEWFDETSDALYYIEVSILKDIA 150
Query: 272 YVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECS 330
V + + +LH+R + LK T+A M+ L+ P VF DP CG GT+ +E
Sbjct: 151 TVTVDTSGEALHKRGYRKRAGDAPLKETLASAMISLSFWEPSRVFYDPFCGSGTLCIEAY 210
Query: 331 L-------SYPHTF-FVCGDINEKLVLKTQANVLHNSGNLNRELKV 368
+ F F ++ +K LK + N+ + +R+LK+
Sbjct: 211 MIGRNIAPGIMRNFAFENWNLLDKDALKNEKNIARALIDYDRDLKI 256
>gi|387127775|ref|YP_006296380.1| 2-phospho-D-glycerate hydrolyase [Methylophaga sp. JAM1]
gi|386274837|gb|AFI84735.1| 23S rRNA (guanine-N-2-) -methyltransferase rlmL [Methylophaga sp.
JAM1]
Length = 744
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLAS--- 308
VDL D+ +N+ +++N+A V + ++ SLH+R V +K +A ++ A
Sbjct: 133 VDLHQPDLRVNVYLKHNQAIVSIDLSGESLHKRGYRVSQTNAPIKEHLAAAILLSAEWSK 192
Query: 309 -PIPGDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT +E +L
Sbjct: 193 LAREGWALLDPMCGSGTFLIEAAL 216
>gi|389852408|ref|YP_006354642.1| hypothetical protein Py04_0985 [Pyrococcus sp. ST04]
gi|388249714|gb|AFK22567.1| hypothetical protein Py04_0985 [Pyrococcus sp. ST04]
Length = 372
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 14/117 (11%)
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353
++ P +A MV L+ G+V LDP CG GTI +E L + DI+E + +
Sbjct: 181 SIPPRLARIMVNLSEVRKGNV-LDPFCGTGTIVMELLLQGLTAY--GSDISEDRIRDARK 237
Query: 354 NVLHNSGNLNRELKV----SPLVCNVRQL--CFKPACVDGIVTDLPFGKRVGSKSNN 404
NV L RE ++ S VC+VR+L CF+ + I+T+ GK + +K
Sbjct: 238 NVEW----LRREFRIKHSASLRVCDVRRLKKCFR-TRFEAIITEPYMGKALKAKPTR 289
>gi|270290271|ref|ZP_06196496.1| N6-adenine-specific DNA methylase [Pediococcus acidilactici 7_4]
gi|270281052|gb|EFA26885.1| N6-adenine-specific DNA methylase [Pediococcus acidilactici 7_4]
Length = 228
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 230 HTVTSMES--ERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYV--GLPVTQTSLHRR 285
H+V +++ ++A KL + Y W L + L++ ++ +V L T SL +R
Sbjct: 104 HSVPDVQAITKKAIVEKLREVYHWRNQLPETGAKYGLEVSIDKDHVLITLDTTGDSLFKR 163
Query: 286 NIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
+ + LK T+A +V L + +DP CG GTIP+E +L
Sbjct: 164 GYRLYKGSAPLKETMAAALVMLTNWHADKPLVDPFCGSGTIPIEAAL 210
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,680,871,520
Number of Sequences: 23463169
Number of extensions: 323972339
Number of successful extensions: 829274
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 1298
Number of HSP's that attempted gapping in prelim test: 827146
Number of HSP's gapped (non-prelim): 2436
length of query: 494
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 347
effective length of database: 8,910,109,524
effective search space: 3091808004828
effective search space used: 3091808004828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)