BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy19
(494 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2T9W2|THUM3_BOVIN THUMP domain-containing protein 3 OS=Bos taurus GN=THUMPD3 PE=2
SV=1
Length = 506
Score = 265 bits (676), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 163/499 (32%), Positives = 262/499 (52%), Gaps = 39/499 (7%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE +E +EK G + K G+++F+I + + +V LR
Sbjct: 32 SESEHLQVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDITVDSLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ LKD + K + W ++IW
Sbjct: 92 VDNLFVVVQEFKDYQF--KETKEEV------------LKDFEELAGK---LPWSDPLKIW 134
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQN 189
K T + + N N + + R + ++K+ E V++ QI +N
Sbjct: 135 KINTCFKKKKT-KRRKLNP-NSSKQKIDNGRGDTTVEKDVKKELTNSVSDSQISDY-YEN 191
Query: 190 QELKEI------DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFG 242
+KE D + C + ++ + + +LKFRVTCNR G KH +S E+ R FG
Sbjct: 192 PAIKEQVSTLIGDGLTSCKDETEENSKEEADPEVLKFRVTCNRAGEKHCFSSNEAARDFG 251
Query: 243 GKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYN 302
G + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY
Sbjct: 252 GAVQDYFKWKADMTNFDVEVLLNIHDNEVVVGIALTEESLHRRNITHFGPTTLRSTLAYG 311
Query: 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN---- 358
M+RL +P P D+ +DPMCG G IP+E + + + + + GD N L + AN + +
Sbjct: 312 MLRLCAPQPTDIIVDPMCGTGAIPIEGATEWSNCYHIAGD-NNPLAVNRAANNISSLLTK 370
Query: 359 ----SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIE 414
G L L + + ++ L + VD IVTD+PFGKR+GSK N+ LY L E
Sbjct: 371 IQVKEGKLPLGLPIDTIQWDICNLPLRTGSVDIIVTDMPFGKRMGSKKRNWNLYPACLRE 430
Query: 415 IGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
+ ++ RP GRA+LLT D+K +AL LW+ + +N+ G+ + V++L RT F
Sbjct: 431 MSRVCRPGTGRAVLLTQDKKCFAKALSGMGHLWRKVHTVWVNIGGLHAAVYLLKRTPQSF 490
Query: 475 DYAIHGLKEKHKGKPFPPR 493
+H +E + P R
Sbjct: 491 ---VHPSEEDGERCPCTQR 506
>sp|Q9BV44|THUM3_HUMAN THUMP domain-containing protein 3 OS=Homo sapiens GN=THUMPD3 PE=1
SV=1
Length = 507
Score = 257 bits (656), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 160/494 (32%), Positives = 260/494 (52%), Gaps = 47/494 (9%)
Query: 4 HKLVSTAQSD-----EKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDL 58
K V +SD E +TI ATV TGFE +E +EK G + + G+++F I +
Sbjct: 20 QKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDRGKIYFVISV 79
Query: 59 KDIEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVL 118
+ + +V LR +DN+ ++ F+++ F K T+E+ +LKD +D+A
Sbjct: 80 ESLAQVHCLRSVDNLFVVVQEFQDYQF--KQTKEE--------VLKD-FEDLAG------ 122
Query: 119 EIDWKKYMEIWKQITNYNGVLYPS--IEQFNKYNDILRHKKSIRNEINIKKE-SSCETEP 175
++ W +++WK ++ I Q + I ++ ++ N+KKE +S +
Sbjct: 123 KLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHALDS 182
Query: 176 QVNNVQIEKGDLQNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRVTCNRVG 228
+ + +N +KE D++++ C + +++ E +LKFRVTCNR G
Sbjct: 183 HILDY------YENPAIKE-DVSTLIGDDLASCKDETDESSKEETEPQVLKFRVTCNRAG 235
Query: 229 -KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI 287
KH TS E+ R FGG + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI
Sbjct: 236 EKHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNI 295
Query: 288 VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKL 347
F TTL+ T+AY M+RL P+P D+ +DPMCG G IP+E + + F + GD N
Sbjct: 296 THFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGDNNPLA 355
Query: 348 VLKTQANVLH-------NSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGS 400
V + N+ G + L + + ++ L + VD IVTDLPFGKR+GS
Sbjct: 356 VNRAANNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMGS 415
Query: 401 KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGM 460
K N+ LY L E+ ++ P GRA+LLT D K +AL +W+ + +N+ G+
Sbjct: 416 KKRNWNLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGGL 475
Query: 461 KSFVFILNRTADLF 474
++ V++L RT F
Sbjct: 476 RAAVYVLIRTPQAF 489
>sp|P97770|THUM3_MOUSE THUMP domain-containing protein 3 OS=Mus musculus GN=Thumpd3 PE=2
SV=1
Length = 505
Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 151/483 (31%), Positives = 244/483 (50%), Gaps = 42/483 (8%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE E +EK + K G+++F+I ++ + +V LR
Sbjct: 33 SESEHLQVTIGATVPTGFEQTAAGEVREKLKSACRISKDRGKIYFDIAVESLAQVHCLRS 92
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F D ++ L+D + K + W +++W
Sbjct: 93 VDNLFVVVQEFKDYQFK--------------DTKEEVLRDFEELAGK---LPWSDPLKVW 135
Query: 130 KQITNYNGVLYPSI---EQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGD 186
+ T + + K + KK +S ++ + +
Sbjct: 136 QINTTFKKKKAKRRKANQSAGKEKADCGQGDKADEKDGKKKHASSTSDSHILDY------ 189
Query: 187 LQNQELKE------IDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESER 239
+N +KE D+ S C + ++ E + KFRVTCNR G KH TS E+ R
Sbjct: 190 YENPAIKEEISTLVGDVLSSCKDETGQSLREETEPQVQKFRVTCNRAGEKHCFTSNEAAR 249
Query: 240 AFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTI 299
FGG + + + W D+ ++D+++ L I NE V + +T+ SLHRRNI F TTL+ T+
Sbjct: 250 DFGGAIQEYFKWKADMTNFDVEVLLNIHDNEVIVAIALTEESLHRRNITHFGPTTLRSTL 309
Query: 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN- 358
AY M+RL P P DV +DPMCG G IP+E + + H + + GD N L + AN + +
Sbjct: 310 AYGMLRLCEPKPTDVIVDPMCGTGAIPIEGATEWSHCYHIAGD-NNPLAVNRAANNISSL 368
Query: 359 -------SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLF 411
G L + + ++ L + A VD IVTD+PFGKR+GSK N+ LY
Sbjct: 369 LTKSQIKDGKTTWGLPIDAVQWDICNLPLRTASVDIIVTDMPFGKRMGSKKRNWNLYPAC 428
Query: 412 LIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTA 471
L E+ ++ RP GRA+LLT D+K +AL +W+ + +N+ G+ + V++L RTA
Sbjct: 429 LREMSRVCRPGTGRAVLLTQDKKCFTKALSGMGHVWRKVHVVWVNIGGLHAAVYLLKRTA 488
Query: 472 DLF 474
F
Sbjct: 489 QAF 491
>sp|Q9BTF0|THUM2_HUMAN THUMP domain-containing protein 2 OS=Homo sapiens GN=THUMPD2 PE=2
SV=2
Length = 503
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 136/297 (45%), Gaps = 34/297 (11%)
Query: 150 NDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDL-------QNQELKEIDINSMCS 202
N+I+ K I I++ C+ E Q+ +E+ D Q +E + DI
Sbjct: 140 NEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRDFTTKSEKFQEEEFQN-DIEKAID 198
Query: 203 SQNQKTNFTNPEENLLKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDI 260
+ NQ N L FRV+C G T+ E + G + + W DL + +
Sbjct: 199 THNQ---------NDLTFRVSCRCSGTIGKAFTAQEVGKVIGIAIMKHFGWKADLRNPQL 249
Query: 261 DINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMC 320
+I + + + VG+PV + SL R ++ L+ TIA+ M LA G LDPMC
Sbjct: 250 EIFIHLNDIYSVVGIPVFRVSLASRAYIK--TAGLRSTIAWAMASLADIKAGAFVLDPMC 307
Query: 321 GGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380
G GTI +E + +P ++V D+++ +L T N L +G E K+ L +V +L
Sbjct: 308 GLGTILLEAAKEWPDVYYVGADVSDSQLLGTWDN-LKAAG---LEDKIELLKISVIELPL 363
Query: 381 KPACVDGIVTDLPFGK--RVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435
VD I++D+PFGK ++G + L ++ +G G +LL S+ H
Sbjct: 364 PSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVG-------GTIVLLLSEDHH 413
>sp|Q9CZB3|THUM2_MOUSE THUMP domain-containing protein 2 OS=Mus musculus GN=Thumpd2 PE=2
SV=3
Length = 528
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 155/331 (46%), Gaps = 35/331 (10%)
Query: 122 WKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQ 181
W + + +WK++ ++ P E+ ++ + +K+ NE I K+ E + +V
Sbjct: 105 WLEAISLWKKLLEHD----PKREKVSQRDANPLKRKAGENETIIAKKLKVEEKQEVAK-- 158
Query: 182 IEKGDLQNQEL-------------KEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG 228
+ G+ Q +L E+ + + S+ + + + E+ L FRV+C G
Sbjct: 159 -DHGESQEDKLLQGSPEQGEAVTRTELQDHRLNSTTEKAADAQDQED--LTFRVSCRCTG 215
Query: 229 --KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRN 286
+ +T E+ R G L + W DL + +I+I + + + VG+P+ + L R
Sbjct: 216 NVRKVITGQEAGRVIGLALMRQFGWKADLRNPNIEIFMHLSDAYSVVGIPLLRMPLASRT 275
Query: 287 IVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEK 346
++ L+ TIA+ M +A G + LDPMCG GTI VE + +P F++ D+++
Sbjct: 276 YIQ--TAGLRSTIAWAMASIAEIKAGALVLDPMCGLGTILVEAAEEWPDVFYMGADMSDA 333
Query: 347 LVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFL 406
+L N L +G +R + L +V L D I++D+PFGK+ +
Sbjct: 334 QLLGACDN-LKAAGLTDR---IELLKSSVTDLPLPSQSTDVIISDIPFGKKFKLGKD--- 386
Query: 407 LYRLFLIEIGKIVRPQIGRAILLTSD-RKHL 436
+ L E+ +++R +LL+ D +HL
Sbjct: 387 -IKSILQEMERVLRVGGAMVLLLSEDHHRHL 416
>sp|Q57880|TRM14_METJA tRNA (guanine(6)-N2)-methyltransferase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=trm14 PE=1 SV=1
Length = 381
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 129/289 (44%), Gaps = 44/289 (15%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTY------FWLVDLDDYDIDINLQIRYNEAYV 273
F + R G+H TS++ R G + +Y V+LD+ D+ + +++ ++E V
Sbjct: 94 FAIRPLRAGEHNFTSIDIGRVAGEAVIKSYQRDKNIRLKVNLDEPDVIVRVEVIFDELIV 153
Query: 274 GLPVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
G+ T +L +R FN L TIA ++V L+ ++ LDPMCG GTIP+E +L
Sbjct: 154 GIDTTGDIALDKRGYRVFNHPAHLNATIASSLVYLSDWKDDEMLLDPMCGSGTIPIEGAL 213
Query: 332 SY----PHTF------FVCGDI-NEKLVLKTQANVLHNSG-----NLNRE---------- 365
P F F DI +L+ K + ++ N L++
Sbjct: 214 MKRNIPPGKFRENKYGFKFIDIFGYELLDKIKKEIVENKNIYKIIGLDKNQKYLDGAKDN 273
Query: 366 ------LKVSPLVC-NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKI 418
L +C + +L K D I+ + P+G R+GSK + LY FL +I
Sbjct: 274 AKNAEVLDTIEFICGDATKLHEKFNESDVIIANPPYGIRIGSKRSVKKLYDEFLSSAKEI 333
Query: 419 VRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFIL 467
+ R I++T++ K A I ++ +++ + G+ + VF L
Sbjct: 334 MHGS-SRLIVITAEDKMFKDA--IAKNNFEVKEEFNVMFGGLMTRVFYL 379
>sp|O28105|TRM14_ARCFU tRNA (guanine(6)-N2)-methyltransferase OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=trm14 PE=3 SV=1
Length = 392
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Query: 220 FRVTCNRVGKHTVTSMESERAFGGKLNDTYF------WLVDLDDYDIDINLQIRYNEAYV 273
F + RVG+H TSM+ R G + D++ V+L+ D+ I +++ +E +V
Sbjct: 120 FAIRSLRVGEHDFTSMDIARVAGQAVIDSFMESYGERLKVNLNQPDVIIRVELVDSELFV 179
Query: 274 GLPVT-QTSLHRRNIVEFNITT-LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
G+ T ++H+R +N L IA M+R+A + +DPMCG GTIP+E +L
Sbjct: 180 GVDTTGDDAMHKRWWRVYNHPAHLNAAIACGMLRIADWKVDESLIDPMCGSGTIPIEAAL 239
>sp|P50840|YPSC_BACSU Putative RNA methyltransferase YpsC OS=Bacillus subtilis (strain
168) GN=ypsC PE=3 SV=1
Length = 385
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 9/110 (8%)
Query: 224 CNRVGKHTVTSMESERAFGGKLNDTYFWLVDLD-DYDIDINLQIRYNEAYVGLPVTQTSL 282
C R+ K + +E + GK ND W+ + +Y ++I+L ++A + L + T L
Sbjct: 109 CQRIVKKAI--VEKLKLQSGKAND---WIEETGAEYKVEISL--LKDQALITLDSSGTGL 161
Query: 283 HRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
H+R V+ +K T+A +V+L + P F+DP CG GTI +E +L
Sbjct: 162 HKRGYRVDQGGAPIKETLAAALVQLTNWTPDRPFVDPFCGSGTIAIEAAL 211
>sp|A0L8B5|RLMKL_MAGSM Ribosomal RNA large subunit methyltransferase K/L OS=Magnetococcus
sp. (strain MC-1) GN=rlmL PE=3 SV=1
Length = 722
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 22/95 (23%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMV---------RLAS 308
D+ INL IR NE VG+ ++ LHRR + LK +A ++ RL +
Sbjct: 136 DLRINLGIRGNEGRVGIDLSGEGLHRRGYRLRTGDAPLKENLAAALLYFAGWEEQARLGA 195
Query: 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDI 343
P F+DPMCG GT+P+E ++ + GDI
Sbjct: 196 P-----FVDPMCGSGTLPIEAAM-------MAGDI 218
>sp|O26820|TMG10_METTH tRNA (guanine(10)-N2)-dimethyltransferase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=trmG10 PE=3 SV=1
Length = 336
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 63/137 (45%), Gaps = 15/137 (10%)
Query: 279 QTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFF 338
Q H+R F ++ P +A MV L+ GD LDP CG G I +E L
Sbjct: 157 QARPHKRPF--FYPGSMSPKLARCMVNLSGVKAGDRILDPFCGTGGILIEAGLM--GVRV 212
Query: 339 VCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFG--- 395
V DI+ ++V T+ N+ H G + E+ + + R L VD IVTD P+G
Sbjct: 213 VGADIDWRMVEGTRENLQHY-GITDFEV----IRSDARDLRLDEK-VDAIVTDPPYGISA 266
Query: 396 KRVGSKSNNFLLYRLFL 412
G KS LYR FL
Sbjct: 267 STAGEKSEK--LYREFL 281
>sp|O29011|TMG10_ARCFU tRNA (guanine(10)-N2)-dimethyltransferase OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=trmG10 PE=3 SV=1
Length = 320
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 27/222 (12%)
Query: 221 RVTCNRV-GKHTVTSMESERAFGGKLNDTYFWL----VDLDDYDIDINLQIRYNEAYVGL 275
R+ C RV G T++E R G L W V + + +I + I+ ++ YVGL
Sbjct: 82 RLCCVRVKGGKGKTALE--RKLGALL-----WKRGAKVSVSNPEIVYKVYIQDDKCYVGL 134
Query: 276 -----PVTQTSLHRRNIVEFNI-TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC 329
Q L R + F + + +KP +A +V L + G+ LDPMCG G+ +E
Sbjct: 135 LEFERDTRQFFLRRPDRRPFLMPSAIKPKLARALVNLTGVLEGETLLDPMCGTGSFLIEA 194
Query: 330 SLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389
L + + D EK+V + N+ + ++ S L+ + + L + V GI
Sbjct: 195 GLMGINPIGI--DFIEKIVRGCRVNLEYYG------IEGSVLLGDAKNLPLRDESVRGIA 246
Query: 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431
TD P+ + + LY E ++++ + GRA ++T+
Sbjct: 247 TDYPYLRSTKAAGTLDELYSKTSEEFERVLK-KGGRAAIVTN 287
>sp|B2TUD1|RLMKL_SHIB3 Ribosomal RNA large subunit methyltransferase K/L OS=Shigella
boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rlmL
PE=3 SV=1
Length = 702
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|B1LJR4|RLMKL_ECOSM Ribosomal RNA large subunit methyltransferase K/L OS=Escherichia
coli (strain SMS-3-5 / SECEC) GN=rlmL PE=3 SV=1
Length = 702
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|B5YT79|RLMKL_ECO5E Ribosomal RNA large subunit methyltransferase K/L OS=Escherichia
coli O157:H7 (strain EC4115 / EHEC) GN=rlmL PE=3 SV=1
Length = 702
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|Q8XDB2|RLMKL_ECO57 Ribosomal RNA large subunit methyltransferase K/L OS=Escherichia
coli O157:H7 GN=rlmL PE=3 SV=1
Length = 702
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|P75864|RLMKL_ECOLI Ribosomal RNA large subunit methyltransferase K/L OS=Escherichia
coli (strain K12) GN=rlmL PE=1 SV=1
Length = 702
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|B1IVY4|RLMKL_ECOLC Ribosomal RNA large subunit methyltransferase K/L OS=Escherichia
coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rlmL PE=3
SV=1
Length = 702
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|Q0TJB3|RLMKL_ECOL5 Ribosomal RNA large subunit methyltransferase K/L OS=Escherichia
coli O6:K15:H31 (strain 536 / UPEC) GN=rlmL PE=3 SV=1
Length = 702
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|A7ZYQ0|RLMKL_ECOHS Ribosomal RNA large subunit methyltransferase K/L OS=Escherichia
coli O9:H4 (strain HS) GN=rlmL PE=3 SV=1
Length = 702
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|B1X8Q2|RLMKL_ECODH Ribosomal RNA large subunit methyltransferase K/L OS=Escherichia
coli (strain K12 / DH10B) GN=rlmL PE=3 SV=1
Length = 702
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|Q31YL1|RLMKL_SHIBS Ribosomal RNA large subunit methyltransferase K/L OS=Shigella
boydii serotype 4 (strain Sb227) GN=rlmL PE=3 SV=1
Length = 702
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|Q32HV8|RLMKL_SHIDS Ribosomal RNA large subunit methyltransferase K/L OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=rlmL PE=3 SV=1
Length = 702
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|A7ZK52|RLMKL_ECO24 Ribosomal RNA large subunit methyltransferase K/L OS=Escherichia
coli O139:H28 (strain E24377A / ETEC) GN=rlmL PE=3 SV=1
Length = 702
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|Q8FJ88|RLMKL_ECOL6 Ribosomal RNA large subunit methyltransferase K/L OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rlmL
PE=3 SV=1
Length = 702
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|Q3Z3H3|RLMKL_SHISS Ribosomal RNA large subunit methyltransferase K/L OS=Shigella
sonnei (strain Ss046) GN=rlmL PE=3 SV=1
Length = 702
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + I +K T+A +V P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRTGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|Q3A2U5|RLMKL_PELCD Ribosomal RNA large subunit methyltransferase K/L OS=Pelobacter
carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rlmL PE=3
SV=1
Length = 713
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYN-MVRLASP- 309
+DL+ DI +NL I ++A + L ++ SLHRR E + LK +A ++R P
Sbjct: 133 IDLERPDIRLNLHIDRDQATLSLDLSGDSLHRRGYRAEGVLAPLKENLAAAILLRAGWPD 192
Query: 310 --IPGDVFLDPMCGGGTIPVECSL 331
G +DPMCG GT+ +E +L
Sbjct: 193 VGARGGALVDPMCGSGTLVIEAAL 216
>sp|Q1RDR6|RLMKL_ECOUT Ribosomal RNA large subunit methyltransferase K/L OS=Escherichia
coli (strain UTI89 / UPEC) GN=rlmL PE=3 SV=1
Length = 702
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGMAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|A1A9L8|RLMKL_ECOK1 Ribosomal RNA large subunit methyltransferase K/L OS=Escherichia
coli O1:K1 / APEC GN=rlmL PE=3 SV=1
Length = 702
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGMAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|Q6LRA0|RLMKL_PHOPR Ribosomal RNA large subunit methyltransferase K/L OS=Photobacterium
profundum GN=rlmL PE=3 SV=1
Length = 712
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+D + D+ I++++ + +GL + + LH+R E L+ T A +V + P
Sbjct: 130 IDREQPDLRIHMRLSGEKGVLGLDMAGSGLHQRGYRTEAGRAPLRETHAAALVLKSGWTP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GQPLLDPMCGSGTLLIEAAM 209
>sp|Q55156|Y064_SYNY3 Putative RNA methyltransferase slr0064 OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=slr0064 PE=3 SV=1
Length = 384
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VDL+ DI IN I N + L T SLHRR LK T+A ++ +A P
Sbjct: 140 VDLEQPDIVINAHIHQNHCQLSLDSTGFSLHRRGYRPALGNAPLKETLASALLTMAGWTP 199
Query: 312 GDVFLDPMCGGGTIPVECSL 331
DP+CG GT +E L
Sbjct: 200 ELPLYDPLCGSGTFLLEAGL 219
>sp|B5XY56|RLMKL_KLEP3 Ribosomal RNA large subunit methyltransferase K/L OS=Klebsiella
pneumoniae (strain 342) GN=rlmL PE=3 SV=1
Length = 701
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A++ L ++ LH R + + +K +A +V + +P
Sbjct: 130 VDRESPDLRINVWLNKETAHISLDLSGEGLHLRGYRDGTGMAPIKENLAAAIVMRSGWVP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|A8AID1|RLMKL_CITK8 Ribosomal RNA large subunit methyltransferase K/L OS=Citrobacter
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
GN=rlmL PE=3 SV=1
Length = 702
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + DI +N+ + + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDIRVNVWLNKDTASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|A6T742|RLMKL_KLEP7 Ribosomal RNA large subunit methyltransferase K/L OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=rlmL PE=3 SV=1
Length = 701
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A++ L ++ LH R + + +K +A +V + +P
Sbjct: 130 VDRESPDLRINVWLNKETAHISLDLSGEGLHLRGYRDGTGMAPIKENLAAAIVMRSGWVP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|A4W8W0|RLMKL_ENT38 Ribosomal RNA large subunit methyltransferase K/L OS=Enterobacter
sp. (strain 638) GN=rlmL PE=3 SV=1
Length = 702
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD ++ D+ IN+ + A++ L + LH+R + I +K +A +V + P
Sbjct: 130 VDRENPDLRINVWLNKETAHISLDLCGEGLHQRGYRDRAGIAPIKENLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|Q96YE5|THII_SULTO Probable tRNA sulfurtransferase OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=thiI PE=3 SV=1
Length = 368
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 219 KFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYV----- 273
KF + RVGKH TS+++ + G L Y VDL++ +I+I++ IR + AYV
Sbjct: 96 KFAIRVRRVGKHNFTSLDAAKVIGSSLY-PYSSGVDLENPEIEIHVDIRQDYAYVYDKVY 154
Query: 274 ----GLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPI 310
GLP+ T R IV F+ P + M++ S +
Sbjct: 155 EGARGLPIGTTG---RTIVLFSGGFDSPIATWMMMKRGSSV 192
>sp|A8GCK7|RLMKL_SERP5 Ribosomal RNA large subunit methyltransferase K/L OS=Serratia
proteamaculans (strain 568) GN=rlmL PE=3 SV=1
Length = 706
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF-NITTLKPTIAYNMVRLASPIPGDVFLD 317
DI +N+ ++ + A V L ++ LH+R + LK ++A +V+ + PG LD
Sbjct: 136 DIRVNVFLQRDMASVALDLSGEGLHQRGYRDLTGQAPLKESLAAAIVQRSGWQPGTPMLD 195
Query: 318 PMCGGGTIPVECSL 331
PMCG GT+ +E ++
Sbjct: 196 PMCGSGTLLIEAAM 209
>sp|A9MHU0|RLMKL_SALAR Ribosomal RNA large subunit methyltransferase K/L OS=Salmonella
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
GN=rlmL PE=3 SV=1
Length = 702
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRAGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|Q57QU1|RLMKL_SALCH Ribosomal RNA large subunit methyltransferase K/L OS=Salmonella
choleraesuis (strain SC-B67) GN=rlmL PE=3 SV=1
Length = 702
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|Q8ZQ73|RLMKL_SALTY Ribosomal RNA large subunit methyltransferase K/L OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rlmL PE=3 SV=1
Length = 702
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|B4TRX1|RLMKL_SALSV Ribosomal RNA large subunit methyltransferase K/L OS=Salmonella
schwarzengrund (strain CVM19633) GN=rlmL PE=3 SV=1
Length = 702
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|B5BBL9|RLMKL_SALPK Ribosomal RNA large subunit methyltransferase K/L OS=Salmonella
paratyphi A (strain AKU_12601) GN=rlmL PE=3 SV=1
Length = 702
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|Q5PGE3|RLMKL_SALPA Ribosomal RNA large subunit methyltransferase K/L OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=rlmL PE=3
SV=1
Length = 702
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|B4T1Z1|RLMKL_SALNS Ribosomal RNA large subunit methyltransferase K/L OS=Salmonella
newport (strain SL254) GN=rlmL PE=3 SV=1
Length = 702
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|B4TDY8|RLMKL_SALHS Ribosomal RNA large subunit methyltransferase K/L OS=Salmonella
heidelberg (strain SL476) GN=rlmL PE=3 SV=1
Length = 702
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|B5R6B4|RLMKL_SALG2 Ribosomal RNA large subunit methyltransferase K/L OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=rlmL PE=3
SV=1
Length = 702
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|B5QZF1|RLMKL_SALEP Ribosomal RNA large subunit methyltransferase K/L OS=Salmonella
enteritidis PT4 (strain P125109) GN=rlmL PE=3 SV=1
Length = 702
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|B5FQZ1|RLMKL_SALDC Ribosomal RNA large subunit methyltransferase K/L OS=Salmonella
dublin (strain CT_02021853) GN=rlmL PE=3 SV=1
Length = 702
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|B5F1U5|RLMKL_SALA4 Ribosomal RNA large subunit methyltransferase K/L OS=Salmonella
agona (strain SL483) GN=rlmL PE=3 SV=1
Length = 702
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|A9N6Y0|RLMKL_SALPB Ribosomal RNA large subunit methyltransferase K/L OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rlmL PE=3
SV=1
Length = 702
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
>sp|Q8Z7S6|RLMKL_SALTI Ribosomal RNA large subunit methyltransferase K/L OS=Salmonella
typhi GN=rlmL PE=3 SV=1
Length = 702
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE-FNITTLKPTIAYNMVRLASPIP 311
VD + D+ IN+ + A + L ++ LH R + + +K T+A +V + P
Sbjct: 130 VDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAAIVMRSGWQP 189
Query: 312 GDVFLDPMCGGGTIPVECSL 331
G LDPMCG GT+ +E ++
Sbjct: 190 GTPLLDPMCGSGTLLIEAAM 209
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,833,745
Number of Sequences: 539616
Number of extensions: 8024969
Number of successful extensions: 21158
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 199
Number of HSP's that attempted gapping in prelim test: 20893
Number of HSP's gapped (non-prelim): 424
length of query: 494
length of database: 191,569,459
effective HSP length: 122
effective length of query: 372
effective length of database: 125,736,307
effective search space: 46773906204
effective search space used: 46773906204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)