Query psy19
Match_columns 494
No_of_seqs 366 out of 3219
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 19:06:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy19.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/19hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0116 Predicted N6-adenine-s 100.0 7.6E-63 1.7E-67 503.7 29.7 327 16-469 2-376 (381)
2 PRK11783 rlmL 23S rRNA m(2)G24 100.0 2.4E-55 5.2E-60 490.5 31.2 330 17-473 2-384 (702)
3 TIGR01177 conserved hypothetic 100.0 3.5E-34 7.6E-39 294.4 26.3 237 219-467 85-329 (329)
4 PF01170 UPF0020: Putative RNA 100.0 4.9E-33 1.1E-37 262.3 15.0 168 285-464 1-178 (179)
5 COG1041 Predicted DNA modifica 100.0 1.5E-30 3.3E-35 263.2 24.0 219 237-469 118-346 (347)
6 PF13659 Methyltransf_26: Meth 99.8 6.2E-20 1.4E-24 159.4 9.7 115 312-432 1-117 (117)
7 KOG2671|consensus 99.8 8.8E-19 1.9E-23 175.2 13.4 202 219-431 100-355 (421)
8 COG2890 HemK Methylase of poly 99.7 1.8E-15 3.8E-20 152.5 19.9 159 290-458 90-267 (280)
9 PF05175 MTS: Methyltransferas 99.7 5.7E-16 1.2E-20 144.7 14.2 113 311-433 31-143 (170)
10 TIGR03533 L3_gln_methyl protei 99.7 1.4E-15 3.1E-20 153.6 18.1 147 292-444 101-266 (284)
11 COG4123 Predicted O-methyltran 99.7 1.2E-15 2.6E-20 149.6 16.6 145 305-456 38-196 (248)
12 PRK14966 unknown domain/N5-glu 99.7 5.7E-15 1.2E-19 154.8 19.9 160 291-461 233-412 (423)
13 TIGR03704 PrmC_rel_meth putati 99.6 5.2E-15 1.1E-19 146.9 17.4 133 292-433 66-219 (251)
14 PRK11805 N5-glutamine S-adenos 99.6 1.2E-14 2.6E-19 148.4 20.0 126 313-444 135-278 (307)
15 TIGR00536 hemK_fam HemK family 99.6 2.1E-14 4.6E-19 144.9 19.7 166 292-465 94-279 (284)
16 TIGR03534 RF_mod_PrmC protein- 99.6 1.5E-14 3.3E-19 142.0 17.7 146 291-444 68-233 (251)
17 PRK09328 N5-glutamine S-adenos 99.6 4.7E-14 1E-18 140.8 19.5 148 290-444 87-254 (275)
18 PRK01544 bifunctional N5-gluta 99.6 3.1E-14 6.7E-19 154.5 19.4 163 290-460 93-299 (506)
19 COG1092 Predicted SAM-dependen 99.6 1.1E-14 2.5E-19 151.9 15.1 151 311-480 217-377 (393)
20 PRK15128 23S rRNA m(5)C1962 me 99.6 1.4E-14 3E-19 152.5 15.5 152 311-480 220-380 (396)
21 PRK15001 SAM-dependent 23S rib 99.6 3.2E-14 7E-19 148.5 15.8 124 302-432 219-342 (378)
22 PRK14967 putative methyltransf 99.6 4.7E-14 1E-18 137.4 15.8 133 291-433 17-162 (223)
23 COG2226 UbiE Methylase involve 99.6 2.5E-14 5.4E-19 140.2 13.2 115 302-430 42-156 (238)
24 PF02384 N6_Mtase: N-6 DNA Met 99.6 1.2E-14 2.6E-19 148.1 10.8 173 293-472 28-235 (311)
25 TIGR00537 hemK_rel_arch HemK-r 99.6 1.4E-13 3E-18 129.4 16.8 125 310-445 18-158 (179)
26 COG2263 Predicted RNA methylas 99.5 4.5E-14 9.8E-19 132.1 11.8 96 295-400 26-124 (198)
27 COG2813 RsmC 16S RNA G1207 met 99.5 1.6E-13 3.6E-18 137.4 16.6 119 303-432 150-268 (300)
28 PRK11783 rlmL 23S rRNA m(2)G24 99.5 1.2E-13 2.5E-18 155.5 16.8 154 311-484 538-695 (702)
29 PHA03412 putative methyltransf 99.5 4.3E-14 9.3E-19 137.8 11.2 135 271-422 13-156 (241)
30 PRK14968 putative methyltransf 99.5 9.6E-13 2.1E-17 123.4 19.5 133 305-444 17-165 (188)
31 PF12847 Methyltransf_18: Meth 99.5 1.5E-13 3.2E-18 118.2 12.7 111 311-431 1-112 (112)
32 PRK09489 rsmC 16S ribosomal RN 99.5 3.9E-13 8.4E-18 139.1 18.1 111 310-432 195-305 (342)
33 PLN02672 methionine S-methyltr 99.5 5.4E-13 1.2E-17 153.7 20.8 185 289-490 95-326 (1082)
34 PRK00107 gidB 16S rRNA methylt 99.5 1.1E-12 2.3E-17 124.9 19.3 145 303-468 37-185 (187)
35 PF01209 Ubie_methyltran: ubiE 99.5 2E-13 4.4E-18 134.1 12.3 113 303-429 39-152 (233)
36 PHA03411 putative methyltransf 99.5 2.3E-13 4.9E-18 135.5 12.7 144 269-431 29-184 (279)
37 PRK00121 trmB tRNA (guanine-N( 99.4 7.6E-13 1.7E-17 127.1 12.6 125 311-441 40-167 (202)
38 PF10672 Methyltrans_SAM: S-ad 99.4 4.6E-13 9.9E-18 134.8 10.8 143 311-478 123-273 (286)
39 PRK10909 rsmD 16S rRNA m(2)G96 99.4 1.9E-12 4.2E-17 124.2 14.1 123 294-432 35-161 (199)
40 PF13847 Methyltransf_31: Meth 99.4 1.6E-12 3.5E-17 118.7 12.3 108 310-432 2-112 (152)
41 PRK10901 16S rRNA methyltransf 99.4 1.8E-12 3.8E-17 138.2 14.2 125 300-431 233-373 (427)
42 KOG3420|consensus 99.4 5.4E-13 1.2E-17 119.4 8.5 102 292-400 25-130 (185)
43 TIGR00091 tRNA (guanine-N(7)-) 99.4 1.8E-12 4E-17 123.6 12.5 122 311-440 16-142 (194)
44 TIGR02752 MenG_heptapren 2-hep 99.4 1.4E-11 3E-16 119.9 18.3 117 301-431 35-152 (231)
45 PRK08287 cobalt-precorrin-6Y C 99.4 2E-11 4.4E-16 115.4 17.4 132 294-444 14-148 (187)
46 TIGR02987 met_A_Alw26 type II 99.4 1.9E-12 4.1E-17 141.4 11.8 140 288-433 5-199 (524)
47 KOG2904|consensus 99.4 6.6E-12 1.4E-16 123.1 14.0 137 290-431 124-286 (328)
48 TIGR00446 nop2p NOL1/NOP2/sun 99.4 4.4E-12 9.5E-17 126.9 13.1 121 306-432 66-201 (264)
49 TIGR00138 gidB 16S rRNA methyl 99.4 1.6E-11 3.5E-16 116.1 16.0 103 311-432 42-144 (181)
50 TIGR00095 RNA methyltransferas 99.4 5.8E-12 1.3E-16 120.0 12.5 110 310-432 48-161 (189)
51 PF03602 Cons_hypoth95: Conser 99.4 3.1E-12 6.6E-17 121.3 10.3 126 294-433 23-156 (183)
52 TIGR02085 meth_trns_rumB 23S r 99.4 1.4E-11 3.1E-16 129.1 16.4 133 291-443 213-346 (374)
53 COG2242 CobL Precorrin-6B meth 99.4 5.4E-11 1.2E-15 111.7 18.4 122 294-433 17-138 (187)
54 PRK03522 rumB 23S rRNA methylu 99.4 1.2E-11 2.6E-16 126.7 15.4 128 295-442 157-285 (315)
55 PLN02233 ubiquinone biosynthes 99.4 4.9E-11 1.1E-15 119.1 19.4 117 303-430 65-182 (261)
56 PLN02244 tocopherol O-methyltr 99.4 1.2E-11 2.6E-16 128.1 15.4 119 299-431 101-224 (340)
57 TIGR02469 CbiT precorrin-6Y C5 99.4 2.1E-11 4.6E-16 106.1 14.6 115 298-429 6-121 (124)
58 PRK00377 cbiT cobalt-precorrin 99.3 3.1E-11 6.8E-16 115.4 16.3 129 295-439 24-154 (198)
59 PRK14903 16S rRNA methyltransf 99.3 8.1E-12 1.7E-16 133.3 13.3 124 303-432 229-368 (431)
60 COG2264 PrmA Ribosomal protein 99.3 2.4E-11 5.1E-16 122.5 15.8 132 295-444 145-280 (300)
61 PRK13168 rumA 23S rRNA m(5)U19 99.3 1.6E-11 3.5E-16 131.4 15.4 127 294-441 280-410 (443)
62 TIGR00563 rsmB ribosomal RNA s 99.3 1.9E-11 4.1E-16 130.3 15.2 126 302-432 229-370 (426)
63 PRK14121 tRNA (guanine-N(7)-)- 99.3 2.6E-11 5.7E-16 126.5 15.7 124 310-441 121-246 (390)
64 PRK07402 precorrin-6B methylas 99.3 5E-11 1.1E-15 113.7 16.4 125 294-436 23-148 (196)
65 COG0742 N6-adenine-specific me 99.3 3.6E-11 7.9E-16 113.3 14.1 128 295-433 25-157 (187)
66 PRK11727 23S rRNA mA1618 methy 99.3 7.8E-11 1.7E-15 120.6 17.6 102 292-397 87-202 (321)
67 PRK14902 16S rRNA methyltransf 99.3 1.8E-11 3.9E-16 131.1 13.4 124 302-432 241-381 (444)
68 TIGR00080 pimt protein-L-isoas 99.3 3E-11 6.6E-16 117.0 13.7 120 293-432 59-179 (215)
69 PRK13944 protein-L-isoaspartat 99.3 5.4E-11 1.2E-15 114.6 14.9 119 294-431 55-174 (205)
70 TIGR00479 rumA 23S rRNA (uraci 99.3 7.6E-11 1.7E-15 125.8 17.3 128 294-441 275-406 (431)
71 PRK14901 16S rRNA methyltransf 99.3 2.6E-11 5.5E-16 129.6 13.4 125 302-432 243-386 (434)
72 PF08241 Methyltransf_11: Meth 99.3 1.4E-11 3.1E-16 101.6 8.7 95 316-428 1-95 (95)
73 PRK10258 biotin biosynthesis p 99.3 3.8E-11 8.2E-16 118.6 12.8 120 292-432 23-142 (251)
74 PF06325 PrmA: Ribosomal prote 99.3 7.6E-11 1.6E-15 119.5 15.0 127 295-442 144-274 (295)
75 COG2265 TrmA SAM-dependent met 99.3 4.6E-11 9.9E-16 127.0 13.8 131 292-442 274-407 (432)
76 PRK14103 trans-aconitate 2-met 99.3 3.7E-11 8.1E-16 119.2 12.4 115 295-431 13-127 (255)
77 PRK01683 trans-aconitate 2-met 99.3 4.6E-11 1E-15 118.4 12.6 117 295-431 15-131 (258)
78 TIGR00477 tehB tellurite resis 99.3 5.8E-11 1.3E-15 113.4 12.8 109 305-429 24-132 (195)
79 PF05958 tRNA_U5-meth_tr: tRNA 99.2 9.8E-11 2.1E-15 121.9 15.1 128 292-442 178-321 (352)
80 smart00650 rADc Ribosomal RNA 99.2 5.2E-11 1.1E-15 111.0 11.7 88 300-396 2-89 (169)
81 PF11599 AviRa: RRNA methyltra 99.2 5.1E-11 1.1E-15 113.3 11.5 162 294-465 30-240 (246)
82 PRK06922 hypothetical protein; 99.2 6.7E-11 1.4E-15 129.6 14.0 119 305-430 412-537 (677)
83 PRK11207 tellurite resistance 99.2 7.5E-11 1.6E-15 112.9 12.8 107 308-429 27-133 (197)
84 PRK14904 16S rRNA methyltransf 99.2 7E-11 1.5E-15 126.6 13.6 123 303-432 242-379 (445)
85 PRK00517 prmA ribosomal protei 99.2 6.3E-10 1.4E-14 110.4 18.0 111 309-444 117-230 (250)
86 PF02353 CMAS: Mycolic acid cy 99.2 5.8E-11 1.2E-15 119.4 10.6 111 302-428 53-164 (273)
87 PRK11873 arsM arsenite S-adeno 99.2 1.7E-10 3.8E-15 115.3 14.0 110 306-429 72-182 (272)
88 PRK13942 protein-L-isoaspartat 99.2 2.1E-10 4.6E-15 111.0 14.2 121 292-432 57-178 (212)
89 COG2521 Predicted archaeal met 99.2 1.5E-11 3.3E-16 118.2 5.9 128 292-433 117-248 (287)
90 PF02475 Met_10: Met-10+ like- 99.2 1.2E-10 2.7E-15 111.7 12.1 100 309-426 99-198 (200)
91 TIGR00406 prmA ribosomal prote 99.2 5.5E-10 1.2E-14 113.1 17.0 102 310-430 158-259 (288)
92 PRK15451 tRNA cmo(5)U34 methyl 99.2 1.5E-10 3.2E-15 114.6 12.4 108 309-429 54-163 (247)
93 PRK11036 putative S-adenosyl-L 99.2 1.1E-10 2.5E-15 115.8 11.5 109 310-433 43-152 (255)
94 PLN02490 MPBQ/MSBQ methyltrans 99.2 1.3E-09 2.7E-14 112.7 19.5 119 295-430 96-215 (340)
95 PRK04266 fibrillarin; Provisio 99.2 7.6E-10 1.6E-14 108.4 17.1 116 295-429 53-175 (226)
96 KOG3191|consensus 99.2 1.2E-09 2.7E-14 101.5 17.4 148 312-469 44-208 (209)
97 PTZ00098 phosphoethanolamine N 99.2 2.4E-10 5.1E-15 114.3 13.3 123 291-430 34-156 (263)
98 PF13649 Methyltransf_25: Meth 99.2 5.2E-11 1.1E-15 101.3 6.7 97 315-424 1-101 (101)
99 PRK05031 tRNA (uracil-5-)-meth 99.2 4E-10 8.8E-15 117.7 14.7 126 294-442 190-331 (362)
100 PRK08317 hypothetical protein; 99.2 8E-10 1.7E-14 106.8 15.2 118 299-431 7-125 (241)
101 PLN02336 phosphoethanolamine N 99.1 4.6E-10 1E-14 121.1 14.8 114 301-430 256-369 (475)
102 TIGR02143 trmA_only tRNA (urac 99.1 6.7E-10 1.4E-14 115.7 14.9 126 294-442 181-322 (353)
103 TIGR00740 methyltransferase, p 99.1 5.8E-10 1.3E-14 109.5 13.5 107 310-429 52-160 (239)
104 PRK11088 rrmA 23S rRNA methylt 99.1 3.1E-10 6.7E-15 113.9 11.5 116 294-436 69-187 (272)
105 PRK04338 N(2),N(2)-dimethylgua 99.1 6.5E-10 1.4E-14 116.8 14.3 122 295-434 40-162 (382)
106 KOG1540|consensus 99.1 6.4E-10 1.4E-14 108.4 13.1 115 305-430 94-214 (296)
107 PLN02396 hexaprenyldihydroxybe 99.1 2.2E-10 4.9E-15 117.6 10.6 110 309-433 129-238 (322)
108 TIGR02716 C20_methyl_CrtF C-20 99.1 8E-10 1.7E-14 112.6 14.1 116 299-429 137-253 (306)
109 PRK00216 ubiE ubiquinone/menaq 99.1 4.9E-09 1.1E-13 101.7 19.0 117 300-429 40-157 (239)
110 PRK00312 pcm protein-L-isoaspa 99.1 1.1E-09 2.4E-14 105.6 14.1 115 295-431 62-176 (212)
111 COG2519 GCD14 tRNA(1-methylade 99.1 1.4E-09 3E-14 106.5 14.1 132 292-442 75-207 (256)
112 COG2230 Cfa Cyclopropane fatty 99.1 7.1E-10 1.5E-14 111.0 12.3 110 303-428 64-174 (283)
113 PRK00274 ksgA 16S ribosomal RN 99.1 2.9E-10 6.2E-15 114.3 9.6 94 293-396 24-117 (272)
114 COG0286 HsdM Type I restrictio 99.1 8.1E-10 1.8E-14 119.6 12.7 174 295-474 170-380 (489)
115 PRK14896 ksgA 16S ribosomal RN 99.1 6.3E-10 1.4E-14 111.0 10.8 91 295-396 13-103 (258)
116 PRK12335 tellurite resistance 99.1 1.1E-09 2.5E-14 110.7 12.7 103 312-430 121-223 (287)
117 PF09445 Methyltransf_15: RNA 99.1 3.3E-10 7.2E-15 105.1 7.4 78 313-396 1-81 (163)
118 COG2227 UbiG 2-polyprenyl-3-me 99.0 7.3E-10 1.6E-14 107.7 9.8 107 311-434 59-165 (243)
119 TIGR00438 rrmJ cell division p 99.0 1.9E-09 4.1E-14 102.2 12.4 119 306-441 27-157 (188)
120 TIGR02072 BioC biotin biosynth 99.0 2.3E-09 4.9E-14 103.8 13.2 121 295-433 15-138 (240)
121 PTZ00338 dimethyladenosine tra 99.0 1.1E-09 2.4E-14 111.2 11.4 95 295-397 20-114 (294)
122 PRK11188 rrmJ 23S rRNA methylt 99.0 1.9E-09 4E-14 104.4 12.3 117 309-442 49-177 (209)
123 PRK04457 spermidine synthase; 99.0 1.5E-08 3.3E-13 101.3 18.5 128 292-428 46-175 (262)
124 smart00828 PKS_MT Methyltransf 99.0 1.8E-09 4E-14 104.6 11.3 103 314-430 2-104 (224)
125 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 2.1E-08 4.6E-13 96.2 18.5 113 302-430 30-143 (223)
126 PRK13943 protein-L-isoaspartat 99.0 5.2E-09 1.1E-13 107.5 14.7 119 293-431 62-181 (322)
127 PF02926 THUMP: THUMP domain; 99.0 5.9E-10 1.3E-14 100.5 6.8 58 219-276 85-143 (144)
128 PF08704 GCD14: tRNA methyltra 99.0 9.4E-09 2E-13 101.7 15.6 140 295-454 24-171 (247)
129 PRK05785 hypothetical protein; 99.0 5.5E-09 1.2E-13 102.3 13.8 90 311-422 51-140 (226)
130 PRK11705 cyclopropane fatty ac 99.0 4.1E-09 8.9E-14 110.9 13.4 109 303-430 159-267 (383)
131 PLN02781 Probable caffeoyl-CoA 99.0 3.5E-09 7.6E-14 104.2 12.0 117 296-428 53-176 (234)
132 PRK00811 spermidine synthase; 99.0 1.5E-08 3.2E-13 102.5 16.8 113 311-431 76-192 (283)
133 smart00138 MeTrc Methyltransfe 99.0 1.7E-09 3.6E-14 108.4 9.6 131 295-432 83-244 (264)
134 PLN03075 nicotianamine synthas 99.0 6.1E-09 1.3E-13 105.3 13.3 109 311-431 123-234 (296)
135 cd02440 AdoMet_MTases S-adenos 99.0 7E-09 1.5E-13 84.9 11.5 102 314-429 1-103 (107)
136 TIGR02021 BchM-ChlM magnesium 99.0 2E-08 4.2E-13 97.4 16.4 99 309-422 53-151 (219)
137 PF02390 Methyltransf_4: Putat 98.9 5.8E-09 1.3E-13 99.9 11.2 121 313-441 19-144 (195)
138 TIGR00308 TRM1 tRNA(guanine-26 98.9 6.5E-09 1.4E-13 108.8 12.5 104 312-433 45-150 (374)
139 PTZ00146 fibrillarin; Provisio 98.9 3.8E-08 8.3E-13 99.3 16.8 119 293-429 111-236 (293)
140 COG2520 Predicted methyltransf 98.9 2.6E-08 5.7E-13 102.5 15.7 102 310-429 187-288 (341)
141 TIGR03840 TMPT_Se_Te thiopurin 98.9 2.1E-08 4.6E-13 97.3 14.1 124 295-431 19-153 (213)
142 TIGR00452 methyltransferase, p 98.9 1.8E-08 3.9E-13 103.2 13.5 124 291-429 100-224 (314)
143 TIGR00755 ksgA dimethyladenosi 98.9 1.5E-08 3.2E-13 100.8 12.4 93 293-396 11-106 (253)
144 TIGR03587 Pse_Me-ase pseudamin 98.9 2.4E-08 5.2E-13 96.3 13.4 96 308-420 40-135 (204)
145 PF01135 PCMT: Protein-L-isoas 98.9 2.4E-08 5.2E-13 96.7 12.5 121 292-432 53-174 (209)
146 PRK15068 tRNA mo(5)U34 methylt 98.9 2.9E-08 6.4E-13 102.2 13.8 107 308-429 119-225 (322)
147 PLN02336 phosphoethanolamine N 98.9 1.4E-08 3E-13 109.7 11.8 113 301-429 27-141 (475)
148 COG2518 Pcm Protein-L-isoaspar 98.8 3.9E-08 8.5E-13 94.4 13.2 119 291-431 52-170 (209)
149 PRK05134 bifunctional 3-demeth 98.8 2.9E-08 6.3E-13 96.8 12.3 124 292-432 29-153 (233)
150 PRK13255 thiopurine S-methyltr 98.8 6.2E-08 1.3E-12 94.4 14.4 125 293-430 20-155 (218)
151 KOG2187|consensus 98.8 2.1E-08 4.6E-13 106.3 11.8 125 291-434 363-493 (534)
152 PLN02476 O-methyltransferase 98.8 3.4E-08 7.3E-13 99.3 12.7 118 295-428 102-226 (278)
153 TIGR00417 speE spermidine synt 98.8 1.1E-07 2.5E-12 95.4 16.5 116 311-432 72-188 (270)
154 COG0220 Predicted S-adenosylme 98.8 4.1E-08 8.8E-13 96.1 11.8 118 313-438 50-172 (227)
155 PF13489 Methyltransf_23: Meth 98.8 3.4E-08 7.5E-13 89.6 10.6 111 297-433 7-118 (161)
156 COG4106 Tam Trans-aconitate me 98.8 1.9E-08 4.1E-13 96.2 8.7 113 300-432 19-131 (257)
157 PF08242 Methyltransf_12: Meth 98.8 1.1E-09 2.3E-14 92.5 0.1 99 316-426 1-99 (99)
158 PRK01581 speE spermidine synth 98.8 6.1E-08 1.3E-12 100.4 13.0 117 311-432 150-270 (374)
159 PF03848 TehB: Tellurite resis 98.8 8.1E-08 1.8E-12 91.6 12.7 120 291-430 14-133 (192)
160 PRK11933 yebU rRNA (cytosine-C 98.8 5.1E-08 1.1E-12 104.9 12.7 119 308-432 110-244 (470)
161 KOG1270|consensus 98.8 2.6E-08 5.6E-13 97.9 9.4 110 311-434 89-199 (282)
162 PRK06202 hypothetical protein; 98.8 5.9E-08 1.3E-12 94.9 12.1 97 310-420 59-159 (232)
163 KOG2730|consensus 98.7 9.5E-09 2.1E-13 98.3 5.3 105 284-397 70-178 (263)
164 TIGR03438 probable methyltrans 98.7 7.4E-08 1.6E-12 98.3 12.1 123 294-429 48-176 (301)
165 PLN02366 spermidine synthase 98.7 3E-07 6.6E-12 94.1 16.5 115 310-430 90-206 (308)
166 TIGR01983 UbiG ubiquinone bios 98.7 1.3E-07 2.8E-12 91.4 12.8 123 294-432 24-151 (224)
167 PRK10742 putative methyltransf 98.7 3E-07 6.4E-12 90.6 14.9 97 302-400 77-180 (250)
168 PRK03612 spermidine synthase; 98.7 1.2E-07 2.6E-12 103.7 11.8 115 310-430 296-415 (521)
169 KOG1271|consensus 98.7 2.3E-07 5E-12 86.6 11.6 137 297-441 49-194 (227)
170 COG4122 Predicted O-methyltran 98.6 2.7E-07 5.8E-12 89.7 12.1 116 297-428 45-164 (219)
171 COG1818 Predicted RNA-binding 98.6 9.5E-08 2.1E-12 89.4 8.3 58 219-276 95-152 (175)
172 PLN02585 magnesium protoporphy 98.6 5.1E-07 1.1E-11 92.7 13.9 76 311-391 144-219 (315)
173 PRK07580 Mg-protoporphyrin IX 98.6 4.7E-07 1E-11 87.8 12.6 96 310-420 62-157 (230)
174 PF05401 NodS: Nodulation prot 98.6 4.2E-07 9.2E-12 86.4 11.2 140 311-469 43-196 (201)
175 COG0144 Sun tRNA and rRNA cyto 98.6 7.6E-07 1.6E-11 92.9 13.9 122 305-432 150-290 (355)
176 PRK13256 thiopurine S-methyltr 98.6 9E-07 2E-11 86.6 13.1 128 295-432 28-165 (226)
177 PF05724 TPMT: Thiopurine S-me 98.6 4.7E-07 1E-11 88.2 11.1 125 295-429 22-154 (218)
178 PF01596 Methyltransf_3: O-met 98.6 4E-07 8.7E-12 87.9 10.4 118 295-428 29-153 (205)
179 PRK01269 tRNA s(4)U8 sulfurtra 98.6 5.2E-07 1.1E-11 97.8 12.4 59 219-277 106-165 (482)
180 PRK01565 thiamine biosynthesis 98.5 3.4E-06 7.4E-11 89.3 17.7 89 219-307 104-199 (394)
181 PRK01544 bifunctional N5-gluta 98.5 8.3E-07 1.8E-11 96.8 12.6 123 311-441 347-473 (506)
182 COG0030 KsgA Dimethyladenosine 98.5 7E-07 1.5E-11 88.7 10.1 94 295-397 14-108 (259)
183 KOG1541|consensus 98.5 1.7E-06 3.7E-11 83.2 11.5 123 295-431 32-162 (270)
184 KOG0820|consensus 98.5 1E-06 2.2E-11 87.1 10.2 95 295-397 42-136 (315)
185 TIGR00497 hsdM type I restrict 98.4 1.3E-06 2.8E-11 95.2 12.1 134 295-432 199-357 (501)
186 PF01555 N6_N4_Mtase: DNA meth 98.4 5.4E-07 1.2E-11 86.4 7.5 61 290-353 171-231 (231)
187 PF07021 MetW: Methionine bios 98.4 1.3E-06 2.8E-11 82.8 9.7 105 309-438 11-117 (193)
188 KOG2899|consensus 98.4 4.5E-06 9.8E-11 81.3 12.8 52 307-358 54-105 (288)
189 KOG4300|consensus 98.4 3.2E-06 7E-11 80.5 11.1 112 306-431 71-183 (252)
190 PRK00050 16S rRNA m(4)C1402 me 98.4 1E-06 2.3E-11 89.4 8.0 91 297-394 5-100 (296)
191 PRK11524 putative methyltransf 98.4 1.2E-06 2.5E-11 88.7 8.4 65 290-357 188-252 (284)
192 TIGR02081 metW methionine bios 98.3 3.3E-06 7.2E-11 80.4 10.6 99 310-433 12-112 (194)
193 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.3 4.2E-06 9E-11 84.8 11.3 121 306-432 80-221 (283)
194 PF05185 PRMT5: PRMT5 arginine 98.3 4.5E-06 9.7E-11 89.6 12.2 103 312-426 187-293 (448)
195 PLN02589 caffeoyl-CoA O-methyl 98.3 5.4E-06 1.2E-10 82.3 11.4 116 297-428 65-188 (247)
196 COG0301 ThiI Thiamine biosynth 98.3 4.5E-06 9.7E-11 87.1 11.0 103 219-325 103-212 (383)
197 PF10294 Methyltransf_16: Puta 98.3 3.7E-06 8E-11 79.0 9.4 122 297-431 25-157 (173)
198 PRK08384 thiamine biosynthesis 98.3 3.7E-06 8.1E-11 88.3 10.3 90 219-308 109-204 (381)
199 PF00398 RrnaAD: Ribosomal RNA 98.3 1.1E-05 2.4E-10 80.7 12.7 93 294-395 13-108 (262)
200 PF05971 Methyltransf_10: Prot 98.3 4.4E-06 9.4E-11 84.8 9.8 80 312-396 103-189 (299)
201 PLN02823 spermine synthase 98.2 2.4E-05 5.1E-10 81.1 15.1 114 311-429 103-219 (336)
202 TIGR00342 thiazole biosynthesi 98.2 7.7E-06 1.7E-10 85.9 11.6 90 219-308 101-196 (371)
203 KOG1499|consensus 98.2 4.7E-06 1E-10 85.2 9.6 99 311-425 60-162 (346)
204 PRK13699 putative methylase; P 98.2 4.3E-06 9.4E-11 82.0 8.5 66 290-358 143-208 (227)
205 PLN02232 ubiquinone biosynthes 98.2 6.3E-06 1.4E-10 76.3 8.5 81 339-430 1-81 (160)
206 PF00891 Methyltransf_2: O-met 98.1 2.7E-05 6E-10 76.5 12.6 108 301-429 90-198 (241)
207 KOG1500|consensus 98.1 2.5E-05 5.4E-10 79.2 10.9 113 301-427 167-279 (517)
208 PRK11760 putative 23S rRNA C24 98.1 0.0052 1.1E-07 63.5 27.7 117 262-392 148-278 (357)
209 PF04816 DUF633: Family of unk 98.1 0.0002 4.4E-09 69.2 16.6 141 315-474 1-144 (205)
210 PF08123 DOT1: Histone methyla 98.0 4E-05 8.8E-10 74.0 10.1 123 292-427 23-155 (205)
211 PRK04148 hypothetical protein; 98.0 3.9E-05 8.5E-10 69.1 8.9 82 298-393 3-87 (134)
212 KOG3010|consensus 98.0 1.6E-05 3.4E-10 77.6 6.6 107 307-428 28-135 (261)
213 PF05148 Methyltransf_8: Hypot 97.9 0.00025 5.3E-09 68.3 14.2 149 283-471 44-199 (219)
214 PF08003 Methyltransf_9: Prote 97.9 7E-05 1.5E-09 75.8 10.7 104 311-429 115-218 (315)
215 COG3963 Phospholipid N-methylt 97.9 0.0002 4.4E-09 66.4 12.8 124 292-432 29-158 (194)
216 PF03291 Pox_MCEL: mRNA cappin 97.9 6.7E-05 1.5E-09 77.6 10.9 125 311-441 62-197 (331)
217 COG1867 TRM1 N2,N2-dimethylgua 97.9 0.00014 3E-09 75.1 12.6 149 265-431 5-155 (380)
218 PF02005 TRM: N2,N2-dimethylgu 97.9 5.3E-05 1.1E-09 79.7 9.7 108 311-434 49-158 (377)
219 PF01861 DUF43: Protein of unk 97.9 0.00066 1.4E-08 66.7 16.2 134 295-445 27-171 (243)
220 KOG3045|consensus 97.9 7.3E-05 1.6E-09 73.6 9.3 148 282-471 151-305 (325)
221 COG4976 Predicted methyltransf 97.8 1.4E-05 2.9E-10 77.5 4.0 111 297-430 111-225 (287)
222 KOG2915|consensus 97.8 0.00027 5.9E-09 70.1 13.1 120 302-438 96-218 (314)
223 PF01564 Spermine_synth: Sperm 97.8 0.0005 1.1E-08 68.3 15.0 114 311-430 76-191 (246)
224 COG4076 Predicted RNA methylas 97.8 2.3E-05 4.9E-10 73.8 4.8 70 313-391 34-103 (252)
225 PRK13699 putative methylase; P 97.8 6.6E-05 1.4E-09 73.7 8.4 75 369-444 3-88 (227)
226 PF06080 DUF938: Protein of un 97.8 0.00026 5.7E-09 68.1 12.1 121 299-431 14-142 (204)
227 PF01795 Methyltransf_5: MraW 97.8 0.0002 4.4E-09 73.1 12.1 92 297-394 6-103 (310)
228 TIGR00006 S-adenosyl-methyltra 97.8 0.00011 2.4E-09 74.9 9.8 92 297-394 6-102 (305)
229 KOG1663|consensus 97.8 0.00032 7E-09 68.2 12.2 114 299-428 61-181 (237)
230 COG0421 SpeE Spermidine syntha 97.7 0.00032 6.9E-09 71.0 12.4 125 301-432 67-192 (282)
231 PRK10611 chemotaxis methyltran 97.7 6.3E-05 1.4E-09 76.3 7.3 110 312-428 116-260 (287)
232 KOG2361|consensus 97.7 0.00012 2.6E-09 71.6 8.7 102 314-428 74-181 (264)
233 PF02527 GidB: rRNA small subu 97.6 0.00081 1.7E-08 64.0 12.6 100 314-432 51-150 (184)
234 KOG1661|consensus 97.6 0.00037 8E-09 66.9 9.6 108 309-431 80-194 (237)
235 PF01739 CheR: CheR methyltran 97.6 0.00021 4.5E-09 68.7 7.7 112 311-429 31-174 (196)
236 KOG1122|consensus 97.5 0.0011 2.4E-08 69.5 12.0 118 307-432 237-373 (460)
237 PF12147 Methyltransf_20: Puta 97.5 0.0028 6E-08 63.9 14.0 126 293-428 117-247 (311)
238 cd00315 Cyt_C5_DNA_methylase C 97.3 0.0014 2.9E-08 66.2 10.5 96 314-422 2-105 (275)
239 KOG1975|consensus 97.3 0.0017 3.8E-08 66.0 11.0 139 297-442 104-249 (389)
240 COG1352 CheR Methylase of chem 97.3 0.0015 3.3E-08 65.6 10.5 114 312-432 97-243 (268)
241 PRK11524 putative methyltransf 97.3 0.00033 7.2E-09 70.9 5.5 64 368-432 9-82 (284)
242 TIGR00478 tly hemolysin TlyA f 97.3 0.0015 3.1E-08 64.3 9.7 40 310-350 74-113 (228)
243 COG3897 Predicted methyltransf 97.3 0.00068 1.5E-08 64.5 6.9 71 310-390 78-148 (218)
244 PF06962 rRNA_methylase: Putat 97.3 0.0071 1.5E-07 54.9 13.2 89 337-431 1-93 (140)
245 PF07942 N2227: N2227-like pro 97.2 0.003 6.4E-08 63.6 10.7 104 311-425 56-197 (270)
246 TIGR01444 fkbM_fam methyltrans 97.2 0.0012 2.6E-08 59.1 7.1 59 314-377 1-59 (143)
247 COG0863 DNA modification methy 97.1 0.0016 3.4E-08 65.7 8.4 67 289-358 201-267 (302)
248 PF01728 FtsJ: FtsJ-like methy 97.1 0.0015 3.1E-08 61.4 7.5 103 311-430 23-139 (181)
249 COG0293 FtsJ 23S rRNA methylas 97.1 0.011 2.4E-07 57.0 13.5 117 295-428 25-157 (205)
250 COG4262 Predicted spermidine s 97.1 0.0043 9.4E-08 64.1 11.0 163 256-433 242-410 (508)
251 COG3129 Predicted SAM-dependen 97.1 0.0015 3.3E-08 63.5 7.3 82 311-397 78-166 (292)
252 PF13679 Methyltransf_32: Meth 97.0 0.0034 7.3E-08 56.8 9.0 65 310-377 24-93 (141)
253 COG2384 Predicted SAM-dependen 97.0 0.028 6.1E-07 54.6 15.6 148 310-476 15-165 (226)
254 PF04445 SAM_MT: Putative SAM- 97.0 0.0018 4E-08 63.6 7.0 96 303-400 65-167 (234)
255 PRK00536 speE spermidine synth 97.0 0.013 2.9E-07 58.7 13.2 128 306-454 68-199 (262)
256 PF01269 Fibrillarin: Fibrilla 96.9 0.017 3.7E-07 56.3 13.1 120 293-430 52-178 (229)
257 PF07669 Eco57I: Eco57I restri 96.9 0.0011 2.3E-08 57.3 4.2 48 384-434 2-55 (106)
258 COG0500 SmtA SAM-dependent met 96.9 0.017 3.7E-07 48.7 11.6 102 315-432 52-157 (257)
259 KOG2198|consensus 96.8 0.013 2.8E-07 60.9 11.9 131 307-444 151-316 (375)
260 COG0357 GidB Predicted S-adeno 96.8 0.022 4.9E-07 55.4 12.8 97 312-427 68-165 (215)
261 KOG1253|consensus 96.6 0.0026 5.6E-08 68.0 5.2 108 309-433 107-219 (525)
262 KOG1709|consensus 96.6 0.035 7.6E-07 53.8 12.2 164 292-483 87-255 (271)
263 TIGR03439 methyl_EasF probable 96.6 0.03 6.6E-07 57.8 12.6 123 295-428 62-195 (319)
264 KOG3115|consensus 96.5 0.0058 1.3E-07 58.5 6.4 117 312-432 61-185 (249)
265 KOG2078|consensus 96.5 0.0014 3.1E-08 68.6 2.3 64 310-378 248-311 (495)
266 PF05219 DREV: DREV methyltran 96.4 0.029 6.2E-07 56.0 10.5 93 311-428 94-186 (265)
267 PF00145 DNA_methylase: C-5 cy 96.3 0.0089 1.9E-07 60.6 7.0 94 314-422 2-104 (335)
268 PF03141 Methyltransf_29: Puta 96.2 0.0028 6.1E-08 68.1 3.0 96 313-431 119-220 (506)
269 COG0275 Predicted S-adenosylme 96.2 0.028 6.1E-07 57.1 9.7 91 296-392 8-104 (314)
270 PF01555 N6_N4_Mtase: DNA meth 96.2 0.005 1.1E-07 58.8 4.0 48 385-433 1-59 (231)
271 COG1889 NOP1 Fibrillarin-like 96.1 0.086 1.9E-06 50.7 11.7 118 293-428 55-178 (231)
272 COG2933 Predicted SAM-dependen 96.0 1 2.2E-05 45.1 19.2 127 252-392 138-278 (358)
273 KOG1331|consensus 95.6 0.016 3.4E-07 58.3 4.7 99 311-430 45-143 (293)
274 KOG4589|consensus 95.5 0.095 2.1E-06 49.9 9.5 102 310-428 68-182 (232)
275 KOG1227|consensus 95.5 0.018 3.8E-07 58.3 4.8 75 311-390 194-268 (351)
276 PF05891 Methyltransf_PK: AdoM 95.5 0.087 1.9E-06 51.3 9.4 121 311-444 55-193 (218)
277 KOG1269|consensus 95.1 0.066 1.4E-06 56.2 7.8 107 308-428 107-213 (364)
278 COG1568 Predicted methyltransf 95.0 0.072 1.6E-06 53.4 7.2 105 311-431 152-261 (354)
279 TIGR00675 dcm DNA-methyltransf 95.0 0.13 2.8E-06 53.0 9.5 94 315-422 1-102 (315)
280 PF03059 NAS: Nicotianamine sy 94.7 0.36 7.7E-06 48.9 11.5 105 313-431 122-231 (276)
281 PF13578 Methyltransf_24: Meth 94.4 0.041 8.9E-07 46.7 3.5 98 316-428 1-103 (106)
282 KOG3201|consensus 94.1 0.11 2.3E-06 48.4 5.7 129 294-433 12-143 (201)
283 KOG4058|consensus 94.0 0.18 3.9E-06 46.2 6.9 83 297-385 59-141 (199)
284 PF10237 N6-adenineMlase: Prob 93.9 1.5 3.3E-05 40.9 13.1 111 295-433 11-126 (162)
285 PF11968 DUF3321: Putative met 93.9 0.74 1.6E-05 44.8 11.3 125 313-472 53-195 (219)
286 COG0270 Dcm Site-specific DNA 93.8 0.13 2.7E-06 53.3 6.3 71 313-394 4-77 (328)
287 COG4889 Predicted helicase [Ge 93.2 0.34 7.3E-06 55.5 8.7 120 311-431 845-1023(1518)
288 PF01234 NNMT_PNMT_TEMT: NNMT/ 93.2 0.16 3.6E-06 50.7 5.8 129 310-444 55-231 (256)
289 PRK10458 DNA cytosine methylas 93.0 0.51 1.1E-05 51.3 9.7 74 312-393 88-178 (467)
290 PF02086 MethyltransfD12: D12 93.0 0.14 3.1E-06 50.4 5.1 40 311-352 20-59 (260)
291 KOG2798|consensus 93.0 0.33 7.2E-06 49.7 7.6 106 311-427 150-293 (369)
292 COG2961 ComJ Protein involved 92.9 1.6 3.4E-05 43.5 11.9 131 292-442 70-209 (279)
293 KOG2940|consensus 92.9 0.21 4.5E-06 49.1 5.7 115 293-424 52-168 (325)
294 PF09243 Rsm22: Mitochondrial 92.9 0.29 6.4E-06 49.4 7.2 46 312-357 34-80 (274)
295 PF10354 DUF2431: Domain of un 92.9 0.59 1.3E-05 43.7 8.8 107 320-431 3-126 (166)
296 KOG1596|consensus 92.0 0.71 1.5E-05 45.7 8.2 119 293-429 135-260 (317)
297 PF07091 FmrO: Ribosomal RNA m 92.0 0.57 1.2E-05 46.6 7.7 74 310-390 104-177 (251)
298 KOG2912|consensus 91.9 0.15 3.2E-06 52.2 3.5 74 316-397 107-191 (419)
299 COG1743 Adenine-specific DNA m 91.8 0.17 3.7E-06 57.1 4.2 49 307-357 86-134 (875)
300 KOG3178|consensus 90.7 1.3 2.9E-05 45.9 9.1 97 312-429 178-274 (342)
301 COG4798 Predicted methyltransf 90.3 0.66 1.4E-05 44.5 5.9 119 303-430 40-166 (238)
302 KOG2352|consensus 89.9 3.6 7.7E-05 44.6 11.8 109 314-431 51-162 (482)
303 PHA01634 hypothetical protein 89.6 1.8 3.9E-05 38.9 7.7 49 311-360 28-76 (156)
304 COG1189 Predicted rRNA methyla 89.5 1.7 3.6E-05 43.0 8.3 99 310-430 78-178 (245)
305 KOG1562|consensus 89.5 2.5 5.3E-05 43.2 9.6 117 310-433 120-239 (337)
306 KOG1501|consensus 88.5 0.71 1.5E-05 49.2 5.2 73 313-390 68-141 (636)
307 PF04378 RsmJ: Ribosomal RNA s 87.5 1.5 3.3E-05 43.6 6.6 97 316-431 62-165 (245)
308 KOG2360|consensus 86.3 1.7 3.6E-05 45.8 6.4 85 305-394 207-294 (413)
309 COG1064 AdhP Zn-dependent alco 85.9 4.2 9.2E-05 42.4 9.2 97 305-429 160-258 (339)
310 KOG2782|consensus 85.6 0.81 1.8E-05 44.6 3.5 76 281-356 9-88 (303)
311 KOG3943|consensus 85.0 2.5 5.3E-05 41.5 6.4 59 217-275 202-261 (291)
312 PRK09880 L-idonate 5-dehydroge 84.4 10 0.00022 38.9 11.3 100 305-430 163-266 (343)
313 PRK01747 mnmC bifunctional tRN 84.0 4.9 0.00011 45.6 9.5 127 311-445 57-220 (662)
314 PF07757 AdoMet_MTase: Predict 83.9 1.6 3.5E-05 38.0 4.2 47 298-346 41-91 (112)
315 COG1743 Adenine-specific DNA m 83.4 1.7 3.7E-05 49.4 5.3 49 405-456 564-618 (875)
316 PF04989 CmcI: Cephalosporin h 82.8 2.4 5.3E-05 41.1 5.5 100 313-428 34-145 (206)
317 COG0863 DNA modification methy 81.8 1.7 3.7E-05 43.5 4.3 75 369-444 18-115 (302)
318 KOG0822|consensus 80.6 3.3 7.1E-05 45.4 5.9 102 312-426 368-474 (649)
319 PTZ00357 methyltransferase; Pr 80.4 4.9 0.00011 45.4 7.3 102 314-421 703-823 (1072)
320 COG5459 Predicted rRNA methyla 76.1 5.7 0.00012 41.5 5.9 121 312-441 114-237 (484)
321 PF07279 DUF1442: Protein of u 75.7 13 0.00029 36.2 8.0 88 299-391 29-122 (218)
322 COG1063 Tdh Threonine dehydrog 74.6 13 0.00028 38.7 8.4 98 310-430 167-269 (350)
323 PF02254 TrkA_N: TrkA-N domain 72.8 24 0.00053 29.8 8.4 101 319-444 3-109 (116)
324 KOG2352|consensus 72.6 15 0.00033 39.9 8.3 117 311-434 295-422 (482)
325 TIGR00571 dam DNA adenine meth 71.5 7.7 0.00017 38.9 5.6 48 298-350 13-60 (266)
326 KOG0022|consensus 70.4 9.4 0.0002 39.5 5.8 52 302-353 183-235 (375)
327 PF05430 Methyltransf_30: S-ad 69.4 7.9 0.00017 34.5 4.6 72 367-445 32-104 (124)
328 cd08254 hydroxyacyl_CoA_DH 6-h 68.3 34 0.00073 34.3 9.6 101 306-430 160-263 (338)
329 COG1565 Uncharacterized conser 68.0 26 0.00056 36.9 8.6 62 297-358 60-132 (370)
330 cd08283 FDH_like_1 Glutathione 67.7 16 0.00034 38.3 7.2 50 305-354 178-228 (386)
331 PF00107 ADH_zinc_N: Zinc-bind 66.8 15 0.00032 31.7 5.8 88 321-432 1-91 (130)
332 KOG2793|consensus 66.2 38 0.00082 33.9 9.1 109 311-431 86-200 (248)
333 cd05188 MDR Medium chain reduc 66.1 57 0.0012 31.1 10.4 100 308-431 131-233 (271)
334 PF02636 Methyltransf_28: Puta 64.3 14 0.00031 36.5 5.8 46 312-357 19-72 (252)
335 PF05869 Dam: DNA N-6-adenine- 64.0 22 0.00047 33.8 6.7 35 386-431 65-100 (181)
336 PLN03154 putative allyl alcoho 63.9 49 0.0011 34.1 10.0 47 306-353 153-201 (348)
337 KOG2651|consensus 63.3 22 0.00047 37.8 6.9 53 300-353 142-194 (476)
338 TIGR01712 phage_N6A_met phage 62.5 8.8 0.00019 36.0 3.6 35 387-433 64-99 (166)
339 PF04672 Methyltransf_19: S-ad 61.1 28 0.00061 35.1 7.2 104 313-428 70-188 (267)
340 KOG2098|consensus 61.1 18 0.0004 38.8 6.0 84 367-461 371-465 (591)
341 cd08294 leukotriene_B4_DH_like 60.4 87 0.0019 31.2 10.9 101 305-430 137-241 (329)
342 COG0338 Dam Site-specific DNA 60.1 5.4 0.00012 40.4 1.9 47 299-350 15-61 (274)
343 TIGR03451 mycoS_dep_FDH mycoth 59.1 72 0.0016 32.8 10.2 46 305-353 170-219 (358)
344 PRK10904 DNA adenine methylase 59.1 38 0.00083 34.0 7.9 28 368-395 158-185 (271)
345 COG1062 AdhC Zn-dependent alco 57.0 26 0.00056 36.7 6.2 52 302-353 176-228 (366)
346 cd08232 idonate-5-DH L-idonate 56.6 1.2E+02 0.0025 30.6 11.1 97 310-430 164-262 (339)
347 KOG0024|consensus 56.3 25 0.00054 36.6 5.9 51 303-353 161-212 (354)
348 PF05050 Methyltransf_21: Meth 56.2 26 0.00056 31.2 5.6 42 317-358 1-48 (167)
349 KOG3924|consensus 55.7 11 0.00024 40.0 3.3 103 286-391 164-279 (419)
350 PRK10904 DNA adenine methylase 54.3 20 0.00043 36.1 4.9 49 298-352 16-64 (271)
351 TIGR00571 dam DNA adenine meth 52.9 54 0.0012 32.8 7.7 28 368-395 156-183 (266)
352 KOG0821|consensus 52.0 52 0.0011 32.5 7.0 98 293-397 32-142 (326)
353 KOG1099|consensus 51.6 29 0.00063 34.4 5.3 115 295-428 21-161 (294)
354 TIGR02825 B4_12hDH leukotriene 51.0 1.9E+02 0.004 29.1 11.5 101 305-430 132-237 (325)
355 cd08293 PTGR2 Prostaglandin re 50.6 1.3E+02 0.0029 30.3 10.4 102 305-430 146-254 (345)
356 TIGR01213 conserved hypothetic 50.5 22 0.00048 37.7 4.6 74 235-308 116-200 (388)
357 PRK03659 glutathione-regulated 48.8 1.1E+02 0.0025 34.3 10.3 91 320-434 406-502 (601)
358 cd05278 FDH_like Formaldehyde 48.4 94 0.002 31.3 8.9 47 306-353 162-210 (347)
359 PF13651 EcoRI_methylase: Aden 48.1 15 0.00031 38.1 2.7 13 384-396 135-147 (336)
360 PRK07533 enoyl-(acyl carrier p 47.9 2.5E+02 0.0054 27.2 11.6 77 311-394 9-98 (258)
361 COG4301 Uncharacterized conser 47.9 3.2E+02 0.0068 27.8 11.7 124 292-428 62-191 (321)
362 COG1258 Predicted pseudouridyl 47.5 29 0.00063 36.6 4.8 40 235-274 122-161 (398)
363 PF03141 Methyltransf_29: Puta 47.4 57 0.0012 35.8 7.2 42 381-428 424-465 (506)
364 cd08295 double_bond_reductase_ 47.3 1.6E+02 0.0035 29.8 10.5 48 306-354 146-195 (338)
365 KOG1201|consensus 46.9 63 0.0014 33.2 7.0 73 311-392 37-122 (300)
366 PF13561 adh_short_C2: Enoyl-( 45.6 68 0.0015 30.8 7.0 105 319-431 1-134 (241)
367 COG0604 Qor NADPH:quinone redu 45.5 1.4E+02 0.0031 30.8 9.7 100 307-431 138-242 (326)
368 PRK07523 gluconate 5-dehydroge 45.4 2.6E+02 0.0056 26.8 11.1 77 312-395 10-98 (255)
369 KOG2920|consensus 45.0 16 0.00034 37.2 2.4 38 311-349 116-153 (282)
370 PF05063 MT-A70: MT-A70 ; Int 44.3 37 0.0008 31.7 4.7 44 385-432 1-54 (176)
371 PRK06940 short chain dehydroge 42.8 1.5E+02 0.0032 29.2 9.1 73 314-394 4-86 (275)
372 PRK07576 short chain dehydroge 42.7 3.1E+02 0.0068 26.6 11.4 76 311-393 8-95 (264)
373 TIGR01202 bchC 2-desacetyl-2-h 41.9 1.9E+02 0.0042 29.0 9.9 86 311-430 144-231 (308)
374 PRK05854 short chain dehydroge 40.3 3.9E+02 0.0085 26.9 11.9 78 312-394 14-103 (313)
375 KOG1098|consensus 40.2 28 0.00062 39.0 3.6 51 295-345 24-79 (780)
376 PRK08267 short chain dehydroge 38.5 2E+02 0.0043 27.7 9.1 73 314-395 3-88 (260)
377 PRK14554 putative pseudouridyl 38.2 48 0.001 35.7 4.9 74 235-308 148-235 (422)
378 cd08281 liver_ADH_like1 Zinc-d 38.0 2.2E+02 0.0047 29.4 9.8 100 305-430 185-290 (371)
379 cd08285 NADP_ADH NADP(H)-depen 37.9 2.5E+02 0.0053 28.5 10.1 101 304-429 159-265 (351)
380 PRK03562 glutathione-regulated 37.4 2.1E+02 0.0045 32.5 10.1 59 320-390 406-470 (621)
381 cd08239 THR_DH_like L-threonin 37.3 3.1E+02 0.0067 27.6 10.7 48 303-353 155-206 (339)
382 PF06460 NSP13: Coronavirus NS 36.5 1.3E+02 0.0028 30.5 7.2 102 310-431 60-171 (299)
383 cd08291 ETR_like_1 2-enoyl thi 36.3 2.8E+02 0.0061 27.7 10.2 53 300-353 132-186 (324)
384 PRK12939 short chain dehydroge 36.0 3.2E+02 0.007 25.7 10.1 75 312-393 7-93 (250)
385 TIGR03201 dearomat_had 6-hydro 35.7 1.1E+02 0.0024 31.2 7.2 47 306-353 161-208 (349)
386 PRK10669 putative cation:proto 35.2 2.6E+02 0.0056 31.0 10.3 60 319-390 422-487 (558)
387 PRK07102 short chain dehydroge 34.8 3.3E+02 0.0072 25.8 10.0 75 314-394 3-86 (243)
388 PF06859 Bin3: Bicoid-interact 34.0 45 0.00098 29.2 3.2 24 407-431 22-45 (110)
389 COG3392 Adenine-specific DNA m 33.1 26 0.00056 35.4 1.8 47 295-343 10-57 (330)
390 PRK05565 fabG 3-ketoacyl-(acyl 32.6 2.3E+02 0.0049 26.7 8.3 75 314-395 7-94 (247)
391 KOG3350|consensus 31.8 60 0.0013 31.0 3.8 41 383-432 134-174 (217)
392 PRK06914 short chain dehydroge 31.7 3.4E+02 0.0074 26.3 9.7 77 313-394 4-91 (280)
393 PRK06603 enoyl-(acyl carrier p 31.2 5E+02 0.011 25.2 11.8 78 311-395 7-97 (260)
394 PRK05650 short chain dehydroge 31.1 3.1E+02 0.0067 26.6 9.2 74 315-395 3-88 (270)
395 PRK07109 short chain dehydroge 30.7 3.5E+02 0.0075 27.7 9.8 76 312-394 8-95 (334)
396 PRK07890 short chain dehydroge 30.6 4.8E+02 0.01 24.8 10.4 75 312-393 5-91 (258)
397 PF00106 adh_short: short chai 30.5 3.7E+02 0.0081 23.5 9.9 71 320-396 7-92 (167)
398 COG0338 Dam Site-specific DNA 30.3 25 0.00053 35.7 1.2 29 368-396 157-186 (274)
399 PF05711 TylF: Macrocin-O-meth 30.1 3.5E+02 0.0077 27.0 9.3 102 313-428 76-210 (248)
400 PRK07832 short chain dehydroge 29.9 4.8E+02 0.01 25.3 10.4 70 321-395 8-89 (272)
401 PRK07806 short chain dehydroge 29.6 4.8E+02 0.01 24.7 10.1 112 312-431 6-135 (248)
402 PRK12384 sorbitol-6-phosphate 29.6 5E+02 0.011 24.7 10.5 78 313-395 3-92 (259)
403 PRK08213 gluconate 5-dehydroge 29.3 5.1E+02 0.011 24.7 11.1 76 312-394 12-99 (259)
404 PRK06139 short chain dehydroge 28.5 5.4E+02 0.012 26.3 10.8 77 312-395 7-95 (330)
405 PRK08643 acetoin reductase; Va 28.5 5E+02 0.011 24.7 10.1 75 314-395 4-90 (256)
406 PRK08303 short chain dehydroge 28.4 5.6E+02 0.012 25.8 10.7 75 311-392 7-103 (305)
407 PRK10310 PTS system galactitol 27.8 3E+02 0.0064 22.9 7.2 30 368-397 34-63 (94)
408 PRK12826 3-ketoacyl-(acyl-carr 27.7 4.8E+02 0.01 24.5 9.7 77 312-395 6-94 (251)
409 PRK13394 3-hydroxybutyrate deh 27.6 5.4E+02 0.012 24.4 10.2 76 312-394 7-94 (262)
410 PRK08594 enoyl-(acyl carrier p 27.6 5.7E+02 0.012 24.7 10.9 76 311-394 6-97 (257)
411 cd08230 glucose_DH Glucose deh 27.4 3.8E+02 0.0082 27.3 9.5 96 309-430 170-269 (355)
412 PRK06101 short chain dehydroge 26.8 5.2E+02 0.011 24.5 9.8 65 320-394 8-81 (240)
413 cd08237 ribitol-5-phosphate_DH 26.5 1.8E+02 0.0038 29.8 6.8 44 308-353 160-207 (341)
414 TIGR02818 adh_III_F_hyde S-(hy 26.3 2E+02 0.0044 29.7 7.3 48 305-353 179-228 (368)
415 PRK07326 short chain dehydroge 26.2 5.4E+02 0.012 24.0 11.0 74 312-393 6-91 (237)
416 PRK06223 malate dehydrogenase; 25.7 6.4E+02 0.014 25.3 10.7 120 314-442 4-131 (307)
417 COG0031 CysK Cysteine synthase 25.7 1.1E+02 0.0025 31.4 5.0 37 294-330 40-80 (300)
418 PRK06500 short chain dehydroge 25.6 4E+02 0.0086 25.2 8.7 74 312-395 6-91 (249)
419 PRK08085 gluconate 5-dehydroge 25.4 5.9E+02 0.013 24.2 10.1 76 312-394 9-96 (254)
420 PRK08339 short chain dehydroge 25.4 6.3E+02 0.014 24.5 12.1 76 312-393 8-94 (263)
421 PF04378 RsmJ: Ribosomal RNA s 25.3 92 0.002 31.1 4.1 101 311-422 126-235 (245)
422 PRK06079 enoyl-(acyl carrier p 24.8 6.3E+02 0.014 24.3 10.8 76 311-395 6-94 (252)
423 PF11899 DUF3419: Protein of u 24.7 2.3E+02 0.005 30.1 7.3 51 305-357 29-79 (380)
424 PRK06196 oxidoreductase; Provi 24.7 7.1E+02 0.015 24.9 11.4 73 311-394 25-109 (315)
425 PRK06181 short chain dehydroge 24.6 4.1E+02 0.009 25.4 8.7 72 314-392 3-86 (263)
426 TIGR02822 adh_fam_2 zinc-bindi 24.6 1.9E+02 0.0041 29.5 6.5 51 302-353 156-207 (329)
427 PF03269 DUF268: Caenorhabditi 24.5 87 0.0019 29.5 3.5 20 411-431 93-112 (177)
428 PF02086 MethyltransfD12: D12 24.4 58 0.0013 31.7 2.6 29 368-396 160-189 (260)
429 PRK08217 fabG 3-ketoacyl-(acyl 24.3 2.4E+02 0.0053 26.6 6.9 77 311-394 4-92 (253)
430 PRK05867 short chain dehydroge 23.9 6.4E+02 0.014 24.0 11.0 78 311-395 8-97 (253)
431 PF14681 UPRTase: Uracil phosp 23.9 53 0.0011 31.6 2.1 45 312-356 123-174 (207)
432 KOG1205|consensus 23.8 7.9E+02 0.017 25.1 10.9 80 311-396 11-103 (282)
433 cd08255 2-desacetyl-2-hydroxye 23.6 2.4E+02 0.0051 27.4 6.8 49 304-353 90-140 (277)
434 PRK06124 gluconate 5-dehydroge 23.5 6.4E+02 0.014 23.9 11.0 77 311-394 10-98 (256)
435 PRK08324 short chain dehydroge 23.5 7.1E+02 0.015 28.4 11.4 76 311-394 421-508 (681)
436 PRK07889 enoyl-(acyl carrier p 23.5 6.7E+02 0.015 24.2 10.5 76 311-395 6-96 (256)
437 PRK07904 short chain dehydroge 23.3 6.8E+02 0.015 24.1 11.4 78 311-394 7-97 (253)
438 PRK09242 tropinone reductase; 23.3 6.6E+02 0.014 23.9 11.5 80 311-395 8-99 (257)
439 PRK10309 galactitol-1-phosphat 22.5 6.8E+02 0.015 25.2 10.2 45 305-352 154-202 (347)
440 PRK05884 short chain dehydroge 22.2 3.6E+02 0.0078 25.5 7.6 62 321-393 8-78 (223)
441 TIGR00006 S-adenosyl-methyltra 21.5 91 0.002 32.2 3.4 25 408-433 219-243 (305)
442 KOG4174|consensus 21.4 2.4E+02 0.0052 28.5 6.1 59 370-428 119-188 (282)
443 COG0275 Predicted S-adenosylme 21.3 86 0.0019 32.3 3.1 24 408-432 223-246 (314)
444 PRK08293 3-hydroxybutyryl-CoA 21.3 2.9E+02 0.0062 27.7 7.0 43 314-356 5-47 (287)
445 PF05206 TRM13: Methyltransfer 21.0 2.1E+02 0.0045 28.8 5.7 43 303-345 10-57 (259)
446 PRK06125 short chain dehydroge 21.0 7.3E+02 0.016 23.7 11.4 77 312-394 7-91 (259)
447 PRK09291 short chain dehydroge 20.8 7.2E+02 0.016 23.5 10.4 74 314-394 4-83 (257)
448 PLN03209 translocon at the inn 20.6 7.2E+02 0.016 28.1 10.3 84 309-393 77-168 (576)
449 PRK05786 fabG 3-ketoacyl-(acyl 20.6 7E+02 0.015 23.3 11.1 74 312-393 5-90 (238)
450 PRK07984 enoyl-(acyl carrier p 20.3 8.1E+02 0.018 23.9 11.1 78 311-395 5-95 (262)
451 TIGR03206 benzo_BadH 2-hydroxy 20.1 5.4E+02 0.012 24.2 8.4 77 312-395 3-91 (250)
No 1
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.6e-63 Score=503.68 Aligned_cols=327 Identities=25% Similarity=0.346 Sum_probs=287.7
Q ss_pred eEEEEEEcCCChHHHHHHHHHHHhCCccce-EEEcCeEEEEeChhhHHHHh-hhhhhhhhhhhhhcccccCCCCCCCccC
Q psy19 16 QITIEATVVTGFEDVVVEECQEKFGKDLLL-MKSIGRVFFNIDLKDIEKVK-ELRGIDNILFIIATFENFGFSNKGTEED 93 (494)
Q Consensus 16 ~~~~~~t~~~GlE~~~~~E~~~kl~~~~~~-~~~~G~V~F~~~~~~~~~~~-~lR~a~rl~~~l~~~~~~~~~~~~~~~~ 93 (494)
.++++|||++|||.++++||++ ||.. ++ ....|||+|.++.+.++++| |||+|+|+++++++|+..++.
T Consensus 2 ~~~l~aT~~~GLE~~~~~El~~-lg~~-e~~~~~~ggV~f~gd~~~~~~~nlwsRta~Ri~i~l~~fk~~~~~------- 72 (381)
T COG0116 2 MMRLFATTARGLEDLLARELEE-LGAE-EVAKVVNGGVHFEGDVELIYRANLWSRTASRILLPLGEFKAETLD------- 72 (381)
T ss_pred ceeEEeecCCcHHHHHHHHHHh-cCce-eccceeeccEEEeccHHHHHHHhHHHHHHHhhheeeeeeeeCCHH-------
Confidence 4789999999999999999988 9875 54 67899999999999999999 999999999999999877643
Q ss_pred CCCCcchhhHHhhhhhHHHHHHhhhccCchhhHHHhhhhhccCCCcCcchhhccchhhhhhhccccchhhcccccCccCc
Q psy19 94 SGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCET 173 (494)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~W~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (494)
+ ||+.++.++|.++|...
T Consensus 73 ---------------d---ly~~v~~i~w~~~~~~~-------------------------------------------- 90 (381)
T COG0116 73 ---------------D---LYEAVKAINWEEYFPEG-------------------------------------------- 90 (381)
T ss_pred ---------------H---HHHHhhcCCHHHhCCCC--------------------------------------------
Confidence 2 99999999999975532
Q ss_pred ccccccchhccccchhhhhhhhhhhcccccccccCCCCCCCCcceEEEEEEEEecCcccChHHHHHHHHHHHHhhcCC--
Q psy19 174 EPQVNNVQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFW-- 251 (494)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tFrV~~~~~g~~~~~s~~~~~~v~~aI~d~~~~-- 251 (494)
.||.|++++.|+|.++|+++++.+|+||+|++..
T Consensus 91 --------------------------------------------~tf~V~~~~~~~~~~~s~~~a~~vkdAIvd~~~~~~ 126 (381)
T COG0116 91 --------------------------------------------ATFAVRFRGVGSHLFTSPDIARIVKDAIVDRFRRKY 126 (381)
T ss_pred --------------------------------------------CEEEEEEEeccCCccccHHHHHHHHHHHHHHHhhcc
Confidence 2899998889999999999999999999999842
Q ss_pred ----CCCCCCCCEEEEEEEecCcceeccccccccccccccc-ccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHH
Q psy19 252 ----LVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIV-EFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIP 326 (494)
Q Consensus 252 ----~vdl~~pdi~i~v~l~~~~~~l~l~lsg~sL~~Rgy~-~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtil 326 (494)
+||+..||+.|++.+.++.++|++|+||++||+|||| ..++|||+|+||++|+.+++|+++.+++|||||||||+
T Consensus 127 ~~r~~v~~~~Pdv~i~v~l~~~~~~l~iDttG~sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~ 206 (381)
T COG0116 127 GRRPSVDLDGPDVRINVELDKDTATLGIDTTGDSLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTIL 206 (381)
T ss_pred CCCCCccccCCCeEEEEEEEcCEEEEEEeCCCcchhhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHH
Confidence 6999999999999999999999999999999999998 56999999999999999999999999999999999999
Q ss_pred HHHHhcCCC--------------------------------C-------eEEEEeCCHHHHHHHHHHHHhccCCCCcccc
Q psy19 327 VECSLSYPH--------------------------------T-------FFVCGDINEKLVLKTQANVLHNSGNLNRELK 367 (494)
Q Consensus 327 IEAA~~~~~--------------------------------~-------~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~ 367 (494)
||||++.++ + .++|+|||+++++.|+.|++.+|+ .+.
T Consensus 207 IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv----~d~ 282 (381)
T COG0116 207 IEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGV----GDL 282 (381)
T ss_pred HHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCC----Cce
Confidence 999998531 1 377999999999999999998876 677
Q ss_pred eeeeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHhccccc
Q psy19 368 VSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALW 447 (494)
Q Consensus 368 i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~~~~l~ 447 (494)
|.|.++|+..++.+-+.+|+||||||||.|++....+..||+.|.+.+.+.++- |..++++++.. +...+. +
T Consensus 283 I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~--ws~~v~tt~e~-~~~~~~-----~ 354 (381)
T COG0116 283 IEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAG--WSRYVFTTSED-LLFCLG-----L 354 (381)
T ss_pred EEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcC--CceEEEEccHH-HHHHHh-----h
Confidence 899999999985433689999999999999999877888999988888888873 55566666654 344443 4
Q ss_pred eeeeeEEEccCCceEEEEEEee
Q psy19 448 KCRKQIKINMSGMKSFVFILNR 469 (494)
Q Consensus 448 ~~~~~~~v~~Ggl~~~i~v~~~ 469 (494)
+..+.+.++||.+.|..+.+..
T Consensus 355 ra~~~~~~~ng~l~c~~~~~~~ 376 (381)
T COG0116 355 RADKKRKLYNGPLKCGGLQYHG 376 (381)
T ss_pred hhccceeecccceeeeeEEEeE
Confidence 6677889999999999998864
No 2
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=100.00 E-value=2.4e-55 Score=490.48 Aligned_cols=330 Identities=21% Similarity=0.263 Sum_probs=286.8
Q ss_pred EEEEEEcCCChHHHHHHHHHHHhCCccceEEEcCeEEEEeChhhHHHHh-hhhhhhhhhhhhhcccccCCCCCCCccCCC
Q psy19 17 ITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVK-ELRGIDNILFIIATFENFGFSNKGTEEDSG 95 (494)
Q Consensus 17 ~~~~~t~~~GlE~~~~~E~~~kl~~~~~~~~~~G~V~F~~~~~~~~~~~-~lR~a~rl~~~l~~~~~~~~~~~~~~~~~~ 95 (494)
++|||||++|||++|++||++ ||.. .+...+|+|+|+++++++|++| +||+|+||++++++|+..+++
T Consensus 2 ~~~~a~~~~GlE~~l~~El~~-lg~~-~~~~~~ggV~f~g~~~~~~~~nl~~R~A~RVll~l~~f~a~~~~--------- 70 (702)
T PRK11783 2 NSLFASCAKGLEELLKDELEA-LGAS-ECKVVQGGVHFEGDLELAYRSCLWSRLASRILLPLAEFKVYSDL--------- 70 (702)
T ss_pred eeEEEECCccHHHHHHHHHHh-cCCc-ccEEEcCEEEEEeCHHHHHHHHHHhcchhheEEEeeeeecCCHH---------
Confidence 479999999999999999999 9975 5778999999999999999999 999999999999998766442
Q ss_pred CCcchhhHHhhhhhHHHHHHhhhccCchhhHHHhhhhhccCCCcCcchhhccchhhhhhhccccchhhcccccCccCccc
Q psy19 96 QKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEP 175 (494)
Q Consensus 96 ~~~~~~~~~~~l~~~~~l~~~~~~~~W~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (494)
+||+.++.+||++++...
T Consensus 71 ----------------~Ly~~v~~i~W~~~l~~~---------------------------------------------- 88 (702)
T PRK11783 71 ----------------DLYLGVQAIDWTEHFSPD---------------------------------------------- 88 (702)
T ss_pred ----------------HHHHHHHcCCHHHhCCCC----------------------------------------------
Confidence 299999999999864421
Q ss_pred ccccchhccccchhhhhhhhhhhcccccccccCCCCCCCCcceEEEEEEEEecCcccChHHHHHHHHHHHHhhcC-----
Q psy19 176 QVNNVQIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYF----- 250 (494)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tFrV~~~~~g~~~~~s~~~~~~v~~aI~d~~~----- 250 (494)
.||+|+++..+++.+++.+++.+++++|+|++.
T Consensus 89 ------------------------------------------~tf~V~~~~~~s~l~~~~~~~~~vKdAI~d~~~~~~~~ 126 (702)
T PRK11783 89 ------------------------------------------KTFAVDFSGTNDEIRNTQFGALKVKDAIVDRFRRKGGP 126 (702)
T ss_pred ------------------------------------------CeEEEEEEEecCCccCcHHHHHHHHHHHHHHHHHhcCC
Confidence 179999988888888899999999999999984
Q ss_pred -CCCCCCCCCEEEEEEEecCcceeccccccccccccccc-ccccccchHHHHHHHHHHhCC-CCCCEEEEEcCCcChHHH
Q psy19 251 -WLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIV-EFNITTLKPTIAYNMVRLASP-IPGDVFLDPMCGGGTIPV 327 (494)
Q Consensus 251 -~~vdl~~pdi~i~v~l~~~~~~l~l~lsg~sL~~Rgy~-~~~~a~L~e~lAa~ll~la~~-~~g~~VLDP~CGSGtilI 327 (494)
-+||+++|++.|++++.+|.+++++++||++||+|||+ ..++|||+|+||++|+.+++| +++.+++|||||||||+|
T Consensus 127 rp~vd~~~pdv~i~~~~~~~~~~l~ld~sg~~L~rRgyr~~~~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilI 206 (702)
T PRK11783 127 RPSVDKEQPDIRINARLNKGEATISLDLSGESLHQRGYRQATGEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLI 206 (702)
T ss_pred CCCCCCCCCCEEEEEEEeCCEEEEEEECCCCchhhccCccCCCCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHH
Confidence 26999999999999999999999999999999999997 669999999999999999999 778999999999999999
Q ss_pred HHHhc-----------------CC-------------------------CCeEEEEeCCHHHHHHHHHHHHhccCCCCcc
Q psy19 328 ECSLS-----------------YP-------------------------HTFFVCGDINEKLVLKTQANVLHNSGNLNRE 365 (494)
Q Consensus 328 EAA~~-----------------~~-------------------------~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~ 365 (494)
|||++ |+ ...++|+|+|+.|++.|++|+..+|+ .
T Consensus 207 EAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~----~ 282 (702)
T PRK11783 207 EAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGV----A 282 (702)
T ss_pred HHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCC----C
Confidence 99985 11 12589999999999999999998876 4
Q ss_pred cceeeeeeccccccCC--CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHhc
Q psy19 366 LKVSPLVCNVRQLCFK--PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHIT 443 (494)
Q Consensus 366 ~~i~~~~~Da~~l~~~--~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~~ 443 (494)
+.+.+.++|+.+++.+ .+++|+||||||||.+++...++..+|+.+...+. ...+| |+++++|++.. +.+.++
T Consensus 283 ~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk-~~~~g-~~~~llt~~~~-l~~~~~-- 357 (702)
T PRK11783 283 ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK-QQFGG-WNAALFSSSPE-LLSCLG-- 357 (702)
T ss_pred cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH-HhCCC-CeEEEEeCCHH-HHHHhC--
Confidence 5678999999988543 24799999999999999988788899987554433 33377 99999999987 555554
Q ss_pred cccceeeeeEEEccCCceEEEEEEeeCCCC
Q psy19 444 SALWKCRKQIKINMSGMKSFVFILNRTADL 473 (494)
Q Consensus 444 ~~l~~~~~~~~v~~Ggl~~~i~v~~~~~~~ 473 (494)
++..+++.++||+++|+++.|+...+.
T Consensus 358 ---l~~~~~~~l~nG~l~~~l~~~~~~~~~ 384 (702)
T PRK11783 358 ---LRADKQYKLKNGALECVLKNYTIAEES 384 (702)
T ss_pred ---CCCCCCeeeecCceEEEEEEEEccccC
Confidence 577889999999999999999876553
No 3
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=100.00 E-value=3.5e-34 Score=294.39 Aligned_cols=237 Identities=23% Similarity=0.305 Sum_probs=201.4
Q ss_pred EEEEEEEEecCcccChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEEEecCcceeccccc---ccccc--ccccc-cccc
Q psy19 219 KFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVT---QTSLH--RRNIV-EFNI 292 (494)
Q Consensus 219 tFrV~~~~~g~~~~~s~~~~~~v~~aI~d~~~~~vdl~~pdi~i~v~l~~~~~~l~l~ls---g~sL~--~Rgy~-~~~~ 292 (494)
+|+|++++.+++.+.++.+++.+++.|... +++||+++||++|++.+.++.+++|+++. ++.++ ++++| +++|
T Consensus 85 sf~v~~~~~~~~~~~~~~~~~~ig~~i~~~-g~~v~l~~Pd~~i~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~R~~~~~ 163 (329)
T TIGR01177 85 SFAVRVRDLRGYSVDKARLERKIGAILKKK-GFKVSLRRPDIVVRVVITEDIFYLGRVLEERDKEQFIERKPDRRPFFKP 163 (329)
T ss_pred eEEEEEEecCCCCCCHHHHHHHHHHHHHhc-CCccccCCCCeEEEEEEECCeEEEEEEeeecchhhhhhcCcccCCccCC
Confidence 799999988865777888888898888765 36899999999999999999999999874 34443 45554 6799
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
++|.|.+|++|++++.++++.+|||||||||+++++++.. +..++|+|+|+.|++.|+.|++.+|+ .+ +.+.+
T Consensus 164 ~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~----~~-i~~~~ 236 (329)
T TIGR01177 164 GSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGI----ED-FFVKR 236 (329)
T ss_pred CCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCC----CC-CeEEe
Confidence 9999999999999999999999999999999999999887 68999999999999999999998875 22 67899
Q ss_pred eccccccCCCCCeeEEEEcCCCccccCCccc-hHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHhccccceeee
Q psy19 373 CNVRQLCFKPACVDGIVTDLPFGKRVGSKSN-NFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRK 451 (494)
Q Consensus 373 ~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~-~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~~~~l~~~~~ 451 (494)
+|+.++++.++.||+||+|||||.+.+.... ...+|..++.++.++|+|| |++++++++...+.+.+...| | ...
T Consensus 237 ~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~g-G~lv~~~~~~~~~~~~~~~~g--~-i~~ 312 (329)
T TIGR01177 237 GDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSE-GWIVYAVPTRIDLESLAEDAF--R-VVK 312 (329)
T ss_pred cchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCC-cEEEEEEcCCCCHHHHHhhcC--c-chh
Confidence 9999998777799999999999988765433 5578999999999999999 999998887655677777666 6 666
Q ss_pred eEE-EccCCceEEEEEE
Q psy19 452 QIK-INMSGMKSFVFIL 467 (494)
Q Consensus 452 ~~~-v~~Ggl~~~i~v~ 467 (494)
++. ..+++|.++|+++
T Consensus 313 ~~~~~~h~sl~r~i~v~ 329 (329)
T TIGR01177 313 RFEVRVHRSLTRHIYVA 329 (329)
T ss_pred eeeeeeecceEEEEEeC
Confidence 666 4689999999874
No 4
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=100.00 E-value=4.9e-33 Score=262.27 Aligned_cols=168 Identities=33% Similarity=0.494 Sum_probs=135.0
Q ss_pred cccc-ccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCe---------EEEEeCCHHHHHHHHHH
Q psy19 285 RNIV-EFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTF---------FVCGDINEKLVLKTQAN 354 (494)
Q Consensus 285 Rgy~-~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~---------v~G~Did~~al~~Ar~N 354 (494)
|||| +.+++||+|++|++|+++++|++++.|+|||||||||+||||+++.... ++|+|+|+++++.|+.|
T Consensus 1 RgyR~~~~~a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N 80 (179)
T PF01170_consen 1 RGYRPFFGPAPLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAREN 80 (179)
T ss_dssp -STTTSSSSTSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHH
T ss_pred CCCcCCCCCCCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHH
Confidence 7886 6799999999999999999999999999999999999999999987777 99999999999999999
Q ss_pred HHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 355 VLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 355 l~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
++.+|+ ...+.+.++|++++++.++++|+||||||||.|++...++..+|..|++++.++|++ +.+++++.+.
T Consensus 81 ~~~ag~----~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~--~~v~l~~~~~- 153 (179)
T PF01170_consen 81 LKAAGV----EDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP--RAVFLTTSNR- 153 (179)
T ss_dssp HHHTT-----CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT--CEEEEEESCC-
T ss_pred HHhccc----CCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC--CEEEEEECCH-
Confidence 998875 456889999999999666899999999999999998878899999999999999996 4444455444
Q ss_pred HHHHHHHhccccceeeeeEEEccCCceEEE
Q psy19 435 HLIQALHITSALWKCRKQIKINMSGMKSFV 464 (494)
Q Consensus 435 ~l~~~l~~~~~l~~~~~~~~v~~Ggl~~~i 464 (494)
.+.+.+... ..+...+.+|++.+..
T Consensus 154 ~~~~~~~~~-----~~~~~~~~~~~~~~~~ 178 (179)
T PF01170_consen 154 ELEKALGLK-----GWRKRKLYNGHISGTR 178 (179)
T ss_dssp CHHHHHTST-----TSEEEEEEETTEEEEE
T ss_pred HHHHHhcch-----hhceEEEEEecceeEE
Confidence 478887753 3456667778887664
No 5
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.5e-30 Score=263.20 Aligned_cols=219 Identities=24% Similarity=0.385 Sum_probs=179.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCEEEEEEEecCcceecccccc---ccc-----ccccccccccccchHHHHHHHHHHhC
Q psy19 237 SERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQ---TSL-----HRRNIVEFNITTLKPTIAYNMVRLAS 308 (494)
Q Consensus 237 ~~~~v~~aI~d~~~~~vdl~~pdi~i~v~l~~~~~~l~l~lsg---~sL-----~~Rgy~~~~~a~L~e~lAa~ll~la~ 308 (494)
++..++.++.. -+..|++.+|+..+++.+.++++++|..+.. +++ ++|+ +++|.+|.|.+|.+|++||.
T Consensus 118 le~~~~~~~~~-~~~~v~~~~p~~v~r~~~~~~~~~~G~~~~~~dr~~~~~r~~~kRP--f~~p~s~~P~lAR~mVNLa~ 194 (347)
T COG1041 118 LEKAIGGAIPS-EGLRVSLSKPDEVVRVVVTEDKVYLGLTVRERDRKAFEKRDPEKRP--FFRPGSMDPRLARAMVNLAR 194 (347)
T ss_pred hhHHhhccchh-cCceeecCCcceEEEeeeeCCEEEEEEEEEecChHHHhhcCcccCC--ccCcCCcCHHHHHHHHHHhc
Confidence 67778888766 4568999999999999999999999988763 233 3333 56899999999999999999
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
+++|+.|||||||||+|+|||.++ |+.++|+|++.+|++.|+.|++..++ .+..-+..+|+..+|+++.++|.|
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i----~~~~~~~~~Da~~lpl~~~~vdaI 268 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGI----EDYPVLKVLDATNLPLRDNSVDAI 268 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCc----CceeEEEecccccCCCCCCccceE
Confidence 999999999999999999999999 89999999999999999999998864 222223344999999987789999
Q ss_pred EEcCCCccccCCcc-chHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHhccccceeeeeEEE-ccCCceEEEEE
Q psy19 389 VTDLPFGKRVGSKS-NNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKI-NMSGMKSFVFI 466 (494)
Q Consensus 389 VtNPPYG~r~~~~~-~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~~~~l~~~~~~~~v-~~Ggl~~~i~v 466 (494)
+||||||.+..... .+..||.++++.+.++|++| |++++.++... ... +...+ ++....+.. .|++|.+.|++
T Consensus 269 atDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~g-G~~vf~~p~~~-~~~-~~~~~--f~v~~~~~~~~H~sLtR~i~v 343 (347)
T COG1041 269 ATDPPYGRSTKIKGEGLDELYEEALESASEVLKPG-GRIVFAAPRDP-RHE-LEELG--FKVLGRFTMRVHGSLTRVIYV 343 (347)
T ss_pred EecCCCCcccccccccHHHHHHHHHHHHHHHhhcC-cEEEEecCCcc-hhh-HhhcC--ceEEEEEEEeecCceEEEEEE
Confidence 99999998875543 46899999999999999999 99999998432 222 22233 455555544 48999999998
Q ss_pred Eee
Q psy19 467 LNR 469 (494)
Q Consensus 467 ~~~ 469 (494)
+++
T Consensus 344 ~~~ 346 (347)
T COG1041 344 VRK 346 (347)
T ss_pred Eec
Confidence 864
No 6
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.81 E-value=6.2e-20 Score=159.44 Aligned_cols=115 Identities=30% Similarity=0.423 Sum_probs=95.6
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--CCCCCeeEEE
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--FKPACVDGIV 389 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~~~~~~D~IV 389 (494)
|.+|||||||+|++++.++..+ ...++|+|+|+.+++.|+.|+..++. ..+++++++|+.+.. +.+++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGL----DDRVEVIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTT----TTTEEEEESHHHHHHHTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccC----CceEEEEECchhhchhhccCceeEEEE
Confidence 5689999999999999999986 58999999999999999999998764 456899999998885 6668999999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+||||+...........+|..|++.+.++|+|| |.+++++++
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~g-G~~~~~~~~ 117 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPG-GVLVFITPA 117 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEE-EEEEEEEEG
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCC-eEEEEEeCC
Confidence 999999766555555668999999999999999 999999863
No 7
>KOG2671|consensus
Probab=99.79 E-value=8.8e-19 Score=175.20 Aligned_cols=202 Identities=21% Similarity=0.267 Sum_probs=151.3
Q ss_pred EEEEEEEEecCcccChHHHHHHHHHHHHhhc--CCCCCCCCCCEEEEEEEe----cC-------cceeccccc-c-----
Q psy19 219 KFRVTCNRVGKHTVTSMESERAFGGKLNDTY--FWLVDLDDYDIDINLQIR----YN-------EAYVGLPVT-Q----- 279 (494)
Q Consensus 219 tFrV~~~~~g~~~~~s~~~~~~v~~aI~d~~--~~~vdl~~pdi~i~v~l~----~~-------~~~l~l~ls-g----- 279 (494)
||+++....|++. +-.+..+++ +.. +.+ ..+|+|++|+.++.+.-. .+ ++++|-.+. |
T Consensus 100 sfki~fetfgk~~-t~~e~~~~I-~~f-~ylpfeG~Vnlk~Pq~~f~viE~y~~~pn~~p~~p~~IyFGr~ig~g~R~li 176 (421)
T KOG2671|consen 100 SFKIRFETFGKKL-TQDEQVEII-ESF-DYLPFEGPVNLKNPQHVFFVIEEYELDPNVGPEEPKKIYFGRLIGEGQRELI 176 (421)
T ss_pred eeEEEEEEecccc-cHHHHHHHh-hhh-eeccccceeccCCCceEEEEEEeeccCCCCCCCCcceeeehhhhccchHhHh
Confidence 8999999998652 211111111 111 222 248999999999887632 22 455665543 2
Q ss_pred --cccccccccccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHH-------
Q psy19 280 --TSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLK------- 350 (494)
Q Consensus 280 --~sL~~Rgy~~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~------- 350 (494)
-+|.+|.| .|+++|.+.|+-.|.++|.+++|+.|+|||.|||++++.||.. |+.++|.|||-.+++.
T Consensus 177 ~~y~LK~R~y--iGnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~s 252 (421)
T KOG2671|consen 177 EKYDLKKRCY--IGNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDES 252 (421)
T ss_pred hhcccccccc--cCCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcc
Confidence 14667766 4899999999999999999999999999999999999999986 7999999999999983
Q ss_pred HHHHHHhccCCCCcccceeeeeeccccccCCC-CCeeEEEEcCCCccccCCc-------------------------cch
Q psy19 351 TQANVLHNSGNLNRELKVSPLVCNVRQLCFKP-ACVDGIVTDLPFGKRVGSK-------------------------SNN 404 (494)
Q Consensus 351 Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~-~~~D~IVtNPPYG~r~~~~-------------------------~~~ 404 (494)
.+.|.+.+|. ....+.++.+|+...++.. ..||.||||||||.|.+.. ..+
T Consensus 253 i~aNFkQYg~---~~~fldvl~~D~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl 329 (421)
T KOG2671|consen 253 IKANFKQYGS---SSQFLDVLTADFSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSL 329 (421)
T ss_pred hhHhHHHhCC---cchhhheeeecccCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHH
Confidence 3567776663 2345678889999877653 4799999999999885421 124
Q ss_pred HHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 405 FLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 405 ~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
..++..+|.-+.+.|..| ||+++..|
T Consensus 330 ~~~v~dll~fss~~L~~g-grlv~w~p 355 (421)
T KOG2671|consen 330 SSLVYDLLCFSSRRLVDG-GRLVFWLP 355 (421)
T ss_pred HHHHhhHHHhhHhhhhcC-ceEEEecC
Confidence 567778899999999999 99999877
No 8
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.8e-15 Score=152.49 Aligned_cols=159 Identities=17% Similarity=0.178 Sum_probs=119.5
Q ss_pred cccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccccee
Q psy19 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~ 369 (494)
+-|.|=.+.|...++......+. .|||+|||||.+++.+|...+.+.|+|+|||+.|++.|++|+..+|+ .++.
T Consensus 90 liPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-----~~~~ 163 (280)
T COG2890 90 LIPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-----VRVL 163 (280)
T ss_pred eecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-----ccEE
Confidence 45888888888887744444333 79999999999999999999888999999999999999999999875 2345
Q ss_pred eeeeccccccCCCCCeeEEEEcCCCcccc-----------------CCccchHHHHHHHHHHHhhcccCCCcEEEEEec-
Q psy19 370 PLVCNVRQLCFKPACVDGIVTDLPFGKRV-----------------GSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS- 431 (494)
Q Consensus 370 ~~~~Da~~l~~~~~~~D~IVtNPPYG~r~-----------------~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~- 431 (494)
++++|++.- .. ++||+||+||||-..- -...+..++|++|+.++.++|+|| |.+++-.+
T Consensus 164 ~~~~dlf~~-~~-~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~-g~l~le~g~ 240 (280)
T COG2890 164 VVQSDLFEP-LR-GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPG-GVLILEIGL 240 (280)
T ss_pred EEeeecccc-cC-CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCC-cEEEEEECC
Confidence 666687763 33 4899999999995432 011245689999999999999998 98888666
Q ss_pred -CHHHHHHHHHhccccceeeeeEEEccC
Q psy19 432 -DRKHLIQALHITSALWKCRKQIKINMS 458 (494)
Q Consensus 432 -~~~~l~~~l~~~~~l~~~~~~~~v~~G 458 (494)
....+.+.+...+. +..........|
T Consensus 241 ~q~~~v~~~~~~~~~-~~~v~~~~d~~g 267 (280)
T COG2890 241 TQGEAVKALFEDTGF-FEIVETLKDLFG 267 (280)
T ss_pred CcHHHHHHHHHhcCC-ceEEEEEecCCC
Confidence 33457777777663 233344444433
No 9
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.68 E-value=5.7e-16 Score=144.75 Aligned_cols=113 Identities=24% Similarity=0.326 Sum_probs=92.6
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
++..|||+|||+|.+++.++..++...++++|+++.|++.|++|+..+++ .. +.+.+.|+.+. .+..+||+||+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~----~~-v~~~~~d~~~~-~~~~~fD~Iv~ 104 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL----EN-VEVVQSDLFEA-LPDGKFDLIVS 104 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC----TT-EEEEESSTTTT-CCTTCEEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc----cc-ccccccccccc-ccccceeEEEE
Confidence 67799999999999999999998888899999999999999999999875 23 78899998774 33579999999
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
||||.... .+...++..|++++.++|+|| |+++++....
T Consensus 105 NPP~~~~~---~~~~~~~~~~i~~a~~~Lk~~-G~l~lv~~~~ 143 (170)
T PF05175_consen 105 NPPFHAGG---DDGLDLLRDFIEQARRYLKPG-GRLFLVINSH 143 (170)
T ss_dssp ---SBTTS---HCHHHHHHHHHHHHHHHEEEE-EEEEEEEETT
T ss_pred ccchhccc---ccchhhHHHHHHHHHHhccCC-CEEEEEeecC
Confidence 99964322 234567889999999999999 9998876643
No 10
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.68 E-value=1.4e-15 Score=153.56 Aligned_cols=147 Identities=17% Similarity=0.206 Sum_probs=109.9
Q ss_pred cccchHHHHHHHHH-HhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 292 ITTLKPTIAYNMVR-LASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 292 ~a~L~e~lAa~ll~-la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
|.|-.+.+....+. +....++.+|||+|||||.+++.++..+++..++|+|+++.+++.|++|+..+++ ..++.+
T Consensus 101 pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~----~~~i~~ 176 (284)
T TIGR03533 101 PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL----EDRVTL 176 (284)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEE
Confidence 44444555544443 3333445789999999999999999988888999999999999999999998765 346789
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCC-----------------ccchHHHHHHHHHHHhhcccCCCcEEEEEecC-
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGS-----------------KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD- 432 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~-----------------~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~- 432 (494)
+++|+.+. ++..+||+||+||||...-.. ..+...+|+.++..+.++|+|| |++++-++.
T Consensus 177 ~~~D~~~~-~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~g-G~l~~e~g~~ 254 (284)
T TIGR03533 177 IQSDLFAA-LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNEN-GVLVVEVGNS 254 (284)
T ss_pred EECchhhc-cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCC-CEEEEEECcC
Confidence 99998653 334589999999999643210 1134578999999999999999 999986664
Q ss_pred HHHHHHHHHhcc
Q psy19 433 RKHLIQALHITS 444 (494)
Q Consensus 433 ~~~l~~~l~~~~ 444 (494)
...+.+.+...+
T Consensus 255 ~~~v~~~~~~~~ 266 (284)
T TIGR03533 255 MEALEEAYPDVP 266 (284)
T ss_pred HHHHHHHHHhCC
Confidence 344555565544
No 11
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.67 E-value=1.2e-15 Score=149.59 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=110.4
Q ss_pred HHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--CCC
Q psy19 305 RLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--FKP 382 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~~~ 382 (494)
.++.+....+|||+|||+|.+++.+|.+.+.+.|.|+|+++++.+.|++|++.+++ .+++++++.|+.++. ...
T Consensus 38 ~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l----~~ri~v~~~Di~~~~~~~~~ 113 (248)
T COG4123 38 AFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL----EERIQVIEADIKEFLKALVF 113 (248)
T ss_pred hhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc----hhceeEehhhHHHhhhcccc
Confidence 44555567899999999999999999987779999999999999999999998754 678899999998883 233
Q ss_pred CCeeEEEEcCCCccccCC--ccc--------hHHHHHHHHHHHhhcccCCCcEEEEEecCHHH--HHHHHHhccccceee
Q psy19 383 ACVDGIVTDLPFGKRVGS--KSN--------NFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH--LIQALHITSALWKCR 450 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~~~--~~~--------~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~--l~~~l~~~~~l~~~~ 450 (494)
.+||+|||||||...-.. ... ....+..+++.+.++|||+ |+++++.+-... +...++.++ |.+.
T Consensus 114 ~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~-G~l~~V~r~erl~ei~~~l~~~~--~~~k 190 (248)
T COG4123 114 ASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPG-GRLAFVHRPERLAEIIELLKSYN--LEPK 190 (248)
T ss_pred cccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCC-CEEEEEecHHHHHHHHHHHHhcC--CCce
Confidence 479999999999643322 111 1123557888999999999 999999886542 344455544 5555
Q ss_pred eeEEEc
Q psy19 451 KQIKIN 456 (494)
Q Consensus 451 ~~~~v~ 456 (494)
+...|+
T Consensus 191 ~i~~V~ 196 (248)
T COG4123 191 RIQFVY 196 (248)
T ss_pred EEEEec
Confidence 555554
No 12
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.65 E-value=5.7e-15 Score=154.75 Aligned_cols=160 Identities=13% Similarity=0.042 Sum_probs=120.1
Q ss_pred ccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 291 NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 291 ~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
.|.|..+.+...++... .++.+|||+|||||.+++.++...++..++|+|+|+.|++.|++|++.++. ++.+
T Consensus 233 IPRpeTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~------rV~f 304 (423)
T PRK14966 233 IPRPETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA------RVEF 304 (423)
T ss_pred CCCccHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------cEEE
Confidence 36777888888877643 355699999999999999998887888999999999999999999987642 4689
Q ss_pred eeeccccccCC-CCCeeEEEEcCCCccccC-----------------CccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 371 LVCNVRQLCFK-PACVDGIVTDLPFGKRVG-----------------SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 371 ~~~Da~~l~~~-~~~~D~IVtNPPYG~r~~-----------------~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+++|+.+..++ .++||+||+||||..... ...+..++|+.+++.+.++|+|| |.+++..+.
T Consensus 305 i~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkpg-G~lilEiG~ 383 (423)
T PRK14966 305 AHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEG-GFLLLEHGF 383 (423)
T ss_pred EEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCC-cEEEEEECc
Confidence 99998764322 357999999999953211 11245578999999999999999 998886664
Q ss_pred --HHHHHHHHHhccccceeeeeEEEccCCce
Q psy19 433 --RKHLIQALHITSALWKCRKQIKINMSGMK 461 (494)
Q Consensus 433 --~~~l~~~l~~~~~l~~~~~~~~v~~Ggl~ 461 (494)
...+.+.+...+ |.....+....|.-.
T Consensus 384 ~Q~e~V~~ll~~~G--f~~v~v~kDl~G~dR 412 (423)
T PRK14966 384 DQGAAVRGVLAENG--FSGVETLPDLAGLDR 412 (423)
T ss_pred cHHHHHHHHHHHCC--CcEEEEEEcCCCCcE
Confidence 244666666655 454555555554443
No 13
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.64 E-value=5.2e-15 Score=146.91 Aligned_cols=133 Identities=17% Similarity=0.182 Sum_probs=103.0
Q ss_pred cccchHHHHHHHHHHhCC-CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 292 ITTLKPTIAYNMVRLASP-IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~-~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
|.+..+.+...++..... .++.+|||+|||||++++.++...++..++|+|+|+.|++.|++|+..++. .+
T Consensus 66 pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~--------~~ 137 (251)
T TIGR03704 66 PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG--------TV 137 (251)
T ss_pred CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--------EE
Confidence 556677888777765542 234589999999999999998877778999999999999999999987642 57
Q ss_pred eeeccccc-cC-CCCCeeEEEEcCCCcccc------------------CCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 371 LVCNVRQL-CF-KPACVDGIVTDLPFGKRV------------------GSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 371 ~~~Da~~l-~~-~~~~~D~IVtNPPYG~r~------------------~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+++|+.+. +. ..+.||+||+||||-..- ....+..++|+.++..+.++|+|| |++++.+
T Consensus 138 ~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~g-G~l~l~~ 216 (251)
T TIGR03704 138 HEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPG-GHLLVET 216 (251)
T ss_pred EEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCC-CEEEEEE
Confidence 88898753 21 125799999999995211 011245667899999999999999 9999987
Q ss_pred cCH
Q psy19 431 SDR 433 (494)
Q Consensus 431 ~~~ 433 (494)
...
T Consensus 217 ~~~ 219 (251)
T TIGR03704 217 SER 219 (251)
T ss_pred Ccc
Confidence 743
No 14
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.64 E-value=1.2e-14 Score=148.36 Aligned_cols=126 Identities=20% Similarity=0.269 Sum_probs=99.9
Q ss_pred CEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcC
Q psy19 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDL 392 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNP 392 (494)
.+|||+|||+|.+++.++..+|+..++|+|+++.+++.|++|+..+++ ..++.++++|+.+. ++.++||+||+||
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l----~~~i~~~~~D~~~~-l~~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL----EDRVTLIESDLFAA-LPGRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC----CCcEEEEECchhhh-CCCCCccEEEECC
Confidence 689999999999999999988889999999999999999999998764 34578999998653 3345899999999
Q ss_pred CCccccC-----------------CccchHHHHHHHHHHHhhcccCCCcEEEEEec-CHHHHHHHHHhcc
Q psy19 393 PFGKRVG-----------------SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS-DRKHLIQALHITS 444 (494)
Q Consensus 393 PYG~r~~-----------------~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~-~~~~l~~~l~~~~ 444 (494)
||...-. ...+...+|+.+++.+.++|+|| |++++-+. +...+...+...+
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pg-G~l~~E~g~~~~~~~~~~~~~~ 278 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTED-GVLVVEVGNSRVHLEEAYPDVP 278 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCC-CEEEEEECcCHHHHHHHHhhCC
Confidence 9954211 01234578999999999999999 99998665 3444555555433
No 15
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.62 E-value=2.1e-14 Score=144.91 Aligned_cols=166 Identities=17% Similarity=0.203 Sum_probs=116.6
Q ss_pred cccchHHHHHHHHHHhC-CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 292 ITTLKPTIAYNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~-~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
|.|-.+.+...++.... ..+..+|||+|||||.+++.++..+++..++|+|+++.+++.|++|+..+++ ..++.+
T Consensus 94 Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~----~~~v~~ 169 (284)
T TIGR00536 94 PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL----EHRVEF 169 (284)
T ss_pred CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEE
Confidence 55566667666654332 2233689999999999999999988888999999999999999999998764 345789
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccC-----------------CccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVG-----------------SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~-----------------~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
+++|+.+. ++...||+||+||||-.... ...+...+|+.++..+.++|+|| |.+++-++..
T Consensus 170 ~~~d~~~~-~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~g-G~l~~e~g~~ 247 (284)
T TIGR00536 170 IQSNLFEP-LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPN-GFLVCEIGNW 247 (284)
T ss_pred EECchhcc-CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCC-CEEEEEECcc
Confidence 99998763 43348999999999964321 01133468999999999999999 9998866643
Q ss_pred --HHHHHHHHhccccceeeeeEEEccCCceEEEE
Q psy19 434 --KHLIQALHITSALWKCRKQIKINMSGMKSFVF 465 (494)
Q Consensus 434 --~~l~~~l~~~~~l~~~~~~~~v~~Ggl~~~i~ 465 (494)
..+...+....+ |.....+.- ..|..+.++
T Consensus 248 q~~~~~~~~~~~~~-~~~~~~~~D-~~g~~R~~~ 279 (284)
T TIGR00536 248 QQKSLKELLRIKFT-WYDVENGRD-LNGKERVVL 279 (284)
T ss_pred HHHHHHHHHHhcCC-CceeEEecC-CCCCceEEE
Confidence 234444442222 333344443 344444443
No 16
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.62 E-value=1.5e-14 Score=141.99 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=111.2
Q ss_pred ccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 291 NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 291 ~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
.|.+..+.+...++.... ..+.+|||+|||+|.+++.++..++...++|+|+++.+++.|+.|+..+++ .++.+
T Consensus 68 ~p~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-----~~~~~ 141 (251)
T TIGR03534 68 IPRPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL-----DNVTF 141 (251)
T ss_pred cCCCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CeEEE
Confidence 455666777777766654 244689999999999999999988888999999999999999999997764 24789
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCC------------------ccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGS------------------KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~------------------~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
.++|+.+ +++.++||+|++||||...... ..+....|..+++.+.++|+|| |.+++..+.
T Consensus 142 ~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~g-G~~~~~~~~ 219 (251)
T TIGR03534 142 LQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPG-GWLLLEIGY 219 (251)
T ss_pred EECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccC-CEEEEEECc
Confidence 9999877 3445789999999999742110 0112345778999999999999 999887653
Q ss_pred H--HHHHHHHHhcc
Q psy19 433 R--KHLIQALHITS 444 (494)
Q Consensus 433 ~--~~l~~~l~~~~ 444 (494)
. ..+.+.+.+.+
T Consensus 220 ~~~~~~~~~l~~~g 233 (251)
T TIGR03534 220 DQGEAVRALFEAAG 233 (251)
T ss_pred cHHHHHHHHHHhCC
Confidence 2 33555666544
No 17
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.60 E-value=4.7e-14 Score=140.77 Aligned_cols=148 Identities=14% Similarity=0.110 Sum_probs=114.0
Q ss_pred cccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccccee
Q psy19 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~ 369 (494)
+.|.+..+.+...++......++.+|||+|||+|.+++.++...+...++|+|+++.+++.|++|+. .+. ..++.
T Consensus 87 lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~----~~~i~ 161 (275)
T PRK09328 87 LIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL----GARVE 161 (275)
T ss_pred eeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC----CCcEE
Confidence 3467777888888876666667789999999999999999988888899999999999999999998 221 24578
Q ss_pred eeeeccccccCCCCCeeEEEEcCCCccccC------------------CccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 370 PLVCNVRQLCFKPACVDGIVTDLPFGKRVG------------------SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 370 ~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~------------------~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+.++|+... +..++||+||+||||..... ...+...+|..+++.+.++|+|| |.+++.++
T Consensus 162 ~~~~d~~~~-~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~g-G~l~~e~g 239 (275)
T PRK09328 162 FLQGDWFEP-LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPG-GWLLLEIG 239 (275)
T ss_pred EEEccccCc-CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccC-CEEEEEEC
Confidence 899998653 23468999999999964311 01234578899999999999999 99988765
Q ss_pred CH--HHHHHHHHhcc
Q psy19 432 DR--KHLIQALHITS 444 (494)
Q Consensus 432 ~~--~~l~~~l~~~~ 444 (494)
.. ..+...+...+
T Consensus 240 ~~~~~~~~~~l~~~g 254 (275)
T PRK09328 240 YDQGEAVRALLAAAG 254 (275)
T ss_pred chHHHHHHHHHHhCC
Confidence 32 33555565544
No 18
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.60 E-value=3.1e-14 Score=154.48 Aligned_cols=163 Identities=13% Similarity=0.111 Sum_probs=119.3
Q ss_pred cccccchHHHHHHHHHHhC------------------------CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCH
Q psy19 290 FNITTLKPTIAYNMVRLAS------------------------PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINE 345 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la~------------------------~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~ 345 (494)
.-|-|-.|.|...++.... ..++.+|||+|||||.+++.++...++..++|+|+|+
T Consensus 93 LIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~ 172 (506)
T PRK01544 93 LIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANVIATDISL 172 (506)
T ss_pred ccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCH
Confidence 4577778888877765421 1134689999999999999998888888999999999
Q ss_pred HHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcCCCccccC------------------CccchHHH
Q psy19 346 KLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVG------------------SKSNNFLL 407 (494)
Q Consensus 346 ~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~------------------~~~~~~~l 407 (494)
.|++.|+.|+..+++ .+++.++++|+... +..+.||+||+||||..... ...+....
T Consensus 173 ~al~~A~~N~~~~~l----~~~v~~~~~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~ 247 (506)
T PRK01544 173 DAIEVAKSNAIKYEV----TDRIQIIHSNWFEN-IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQA 247 (506)
T ss_pred HHHHHHHHHHHHcCC----ccceeeeecchhhh-CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHH
Confidence 999999999997764 34678899998653 33458999999999964321 11234578
Q ss_pred HHHHHHHHhhcccCCCcEEEEEecC--HHHHHHHHHhccccceeeeeEEEccCCc
Q psy19 408 YRLFLIEIGKIVRPQIGRAILLTSD--RKHLIQALHITSALWKCRKQIKINMSGM 460 (494)
Q Consensus 408 y~~fL~~l~rvLkpg~G~lvllt~~--~~~l~~~l~~~~~l~~~~~~~~v~~Ggl 460 (494)
|+.++..+.++|+|| |.+++.++. ...+...+...+ |.....+.-..|..
T Consensus 248 ~~~il~~a~~~L~~g-G~l~lEig~~q~~~v~~~~~~~g--~~~~~~~~D~~g~~ 299 (506)
T PRK01544 248 YFIIAENAKQFLKPN-GKIILEIGFKQEEAVTQIFLDHG--YNIESVYKDLQGHS 299 (506)
T ss_pred HHHHHHHHHHhccCC-CEEEEEECCchHHHHHHHHHhcC--CCceEEEecCCCCc
Confidence 999999999999999 999886653 233455555544 45444444444443
No 19
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.60 E-value=1.1e-14 Score=151.86 Aligned_cols=151 Identities=14% Similarity=0.109 Sum_probs=118.0
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc----CCCCCe
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC----FKPACV 385 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~----~~~~~~ 385 (494)
.|.+|||+||.||++++.||.. |+ .++++|++..+++.|++|++.||+. ..++.++++|++++- -...+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~---~~~~~~i~~Dvf~~l~~~~~~g~~f 291 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLD---GDRHRFIVGDVFKWLRKAERRGEKF 291 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCC---ccceeeehhhHHHHHHHHHhcCCcc
Confidence 4899999999999999999987 56 9999999999999999999999873 345789999998871 123489
Q ss_pred eEEEEcCC-CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH----HHHHHHHHhccccceeeeeEEEccCCc
Q psy19 386 DGIVTDLP-FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR----KHLIQALHITSALWKCRKQIKINMSGM 460 (494)
Q Consensus 386 D~IVtNPP-YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~----~~l~~~l~~~~~l~~~~~~~~v~~Ggl 460 (494)
|+||+||| |+..-....+...-|..++..+.++|+|| |.+++.|+.. ..|.+.+.+... ..
T Consensus 292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pg-G~l~~~s~~~~~~~~~f~~~i~~a~~-------------~~ 357 (393)
T COG1092 292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPG-GTLVTSSCSRHFSSDLFLEIIARAAA-------------AA 357 (393)
T ss_pred cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCC-CEEEEEecCCccCHHHHHHHHHHHHH-------------hc
Confidence 99999999 66544333456778999999999999999 9999998843 334444443210 12
Q ss_pred eEEEEEEeeCCCCCCCcccC
Q psy19 461 KSFVFILNRTADLFDYAIHG 480 (494)
Q Consensus 461 ~~~i~v~~~~~~~~d~~~~~ 480 (494)
...+.++....|++|||+..
T Consensus 358 ~~~~~~~~~~~~~~D~p~~~ 377 (393)
T COG1092 358 GRRAQEIEGEGQPPDHPRNA 377 (393)
T ss_pred CCcEEEeeccCCCCCccccc
Confidence 23455667899999999864
No 20
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.60 E-value=1.4e-14 Score=152.53 Aligned_cols=152 Identities=15% Similarity=0.085 Sum_probs=112.3
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--C--CCCCee
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--F--KPACVD 386 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~--~~~~~D 386 (494)
++.+|||+|||||++++.++.. ....|+++|+++.+++.|++|+..++++. .+++++++|+++.- + ..++||
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~---~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDL---SKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCC---CcEEEEEccHHHHHHHHHhcCCCCC
Confidence 5789999999999999988764 23589999999999999999999987521 35789999998752 2 235899
Q ss_pred EEEEcCCCccccCC-ccchHHHHHHHHHHHhhcccCCCcEEEEEecC----HHHHHHHHHhccccceeeeeEEEccCCce
Q psy19 387 GIVTDLPFGKRVGS-KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD----RKHLIQALHITSALWKCRKQIKINMSGMK 461 (494)
Q Consensus 387 ~IVtNPPYG~r~~~-~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~----~~~l~~~l~~~~~l~~~~~~~~v~~Ggl~ 461 (494)
+||+||||...... ......-|..++..+.++|+|| |.+++.+++ .+.|.+.+.+... ...
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~g-G~lv~~scs~~~~~~~f~~~v~~aa~-------------~~~ 361 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPG-GILLTFSCSGLMTSDLFQKIIADAAI-------------DAG 361 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEEeCCCcCCHHHHHHHHHHHHH-------------HcC
Confidence 99999998543211 1122334888888999999999 998887764 3445555543221 122
Q ss_pred EEEEEEeeCCCCCCCcccC
Q psy19 462 SFVFILNRTADLFDYAIHG 480 (494)
Q Consensus 462 ~~i~v~~~~~~~~d~~~~~ 480 (494)
+.+.++.+..|++|||...
T Consensus 362 ~~~~~l~~~~~~~DhP~~~ 380 (396)
T PRK15128 362 RDVQFIEQFRQAADHPVIA 380 (396)
T ss_pred CeEEEEEEcCCCCCCCCCC
Confidence 4567778899999999843
No 21
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.57 E-value=3.2e-14 Score=148.49 Aligned_cols=124 Identities=14% Similarity=0.132 Sum_probs=95.7
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~ 381 (494)
.|+.......+.+|||+|||+|.+++.++..+|...|+++|+++.|++.|++|++.++.. ...++++...|+... ..
T Consensus 219 llL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~--~~~~v~~~~~D~l~~-~~ 295 (378)
T PRK15001 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNALSG-VE 295 (378)
T ss_pred HHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc--cCceEEEEEcccccc-CC
Confidence 345544444456999999999999999999999999999999999999999999887632 113567888887653 23
Q ss_pred CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 382 PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 382 ~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
..+||+|++||||....... ..+..+++..+.++|+|| |+++++...
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~---~~ia~~l~~~a~~~LkpG-G~L~iV~nr 342 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALT---DNVAWEMFHHARRCLKIN-GELYIVANR 342 (378)
T ss_pred CCCEEEEEECcCcccCccCC---HHHHHHHHHHHHHhcccC-CEEEEEEec
Confidence 35899999999996432111 233457888999999999 999998643
No 22
>PRK14967 putative methyltransferase; Provisional
Probab=99.57 E-value=4.7e-14 Score=137.38 Aligned_cols=133 Identities=16% Similarity=0.140 Sum_probs=100.6
Q ss_pred ccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 291 NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 291 ~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
.|..-...++..+ ......++.+|||+|||+|.+++.++... ...++|+|+++.+++.|++|+..+++ .+.+
T Consensus 17 ~p~~ds~~l~~~l-~~~~~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~------~~~~ 88 (223)
T PRK14967 17 RPQEDTQLLADAL-AAEGLGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGV------DVDV 88 (223)
T ss_pred CCCCcHHHHHHHH-HhcccCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCC------eeEE
Confidence 3444444555443 34456778899999999999999988762 24899999999999999999987654 2567
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCC-------------ccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGS-------------KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~-------------~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
+++|+... +++++||+|++||||...... ..+...++..++.++.++|+|| |+++++.+..
T Consensus 89 ~~~d~~~~-~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g-G~l~~~~~~~ 162 (223)
T PRK14967 89 RRGDWARA-VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG-GSLLLVQSEL 162 (223)
T ss_pred EECchhhh-ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC-cEEEEEEecc
Confidence 88898764 345689999999999754221 1233456788999999999999 9999876654
No 23
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=2.5e-14 Score=140.20 Aligned_cols=115 Identities=24% Similarity=0.357 Sum_probs=97.4
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~ 381 (494)
.++.+.+..+|..|||+|||||-+++..+...+.+.|+|+|+++.|++.|++.+...+. .. ++++++||.++|++
T Consensus 42 ~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~----~~-i~fv~~dAe~LPf~ 116 (238)
T COG2226 42 ALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV----QN-VEFVVGDAENLPFP 116 (238)
T ss_pred HHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc----cc-eEEEEechhhCCCC
Confidence 34555566689999999999999999999887678999999999999999999986553 33 78999999999999
Q ss_pred CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 382 PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 382 ~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+++||+|.+. ||.|.-.. +...|+++.|+|||| |+++++-
T Consensus 117 D~sFD~vt~~--fglrnv~d------~~~aL~E~~RVlKpg-G~~~vle 156 (238)
T COG2226 117 DNSFDAVTIS--FGLRNVTD------IDKALKEMYRVLKPG-GRLLVLE 156 (238)
T ss_pred CCccCEEEee--ehhhcCCC------HHHHHHHHHHhhcCC-eEEEEEE
Confidence 9999999883 67665432 668888999999999 9988863
No 24
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.56 E-value=1.2e-14 Score=148.14 Aligned_cols=173 Identities=20% Similarity=0.236 Sum_probs=110.6
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-------CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcc
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-------YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRE 365 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-------~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~ 365 (494)
..++..++..|+.++...++.+|+||+||+|+|++++... .+...++|+|+++.++..|+.|+...+.. .
T Consensus 28 ~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~---~ 104 (311)
T PF02384_consen 28 FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID---N 104 (311)
T ss_dssp C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH---C
T ss_pred eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc---c
Confidence 3356778888999999888999999999999999998863 24678999999999999999999876541 1
Q ss_pred cceeeeeeccccccCC--CCCeeEEEEcCCCccc--cCCc----c-------chHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 366 LKVSPLVCNVRQLCFK--PACVDGIVTDLPFGKR--VGSK----S-------NNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 366 ~~i~~~~~Da~~l~~~--~~~~D~IVtNPPYG~r--~~~~----~-------~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
....+..+|....+.. ...||+||+|||||.. .... . .-....-.|+..+.+.|+++ |++++++
T Consensus 105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~-G~~~~Il 183 (311)
T PF02384_consen 105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPG-GRAAIIL 183 (311)
T ss_dssp BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred ccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccc-cceeEEe
Confidence 2235778887766432 3689999999999876 1110 0 00111224888999999999 9999998
Q ss_pred cCHHH--------HHHHHHhccccceeeeeEEE-----ccCCceEEEEEEeeCCC
Q psy19 431 SDRKH--------LIQALHITSALWKCRKQIKI-----NMSGMKSFVFILNRTAD 472 (494)
Q Consensus 431 ~~~~~--------l~~~l~~~~~l~~~~~~~~v-----~~Ggl~~~i~v~~~~~~ 472 (494)
|+..+ +++.+-+.. .....+.+ .+-+..+.|.++.+...
T Consensus 184 p~~~L~~~~~~~~iR~~ll~~~---~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~ 235 (311)
T PF02384_consen 184 PNGFLFSSSSEKKIRKYLLENG---YIEAVISLPSNLFKPTGVPTSILILNKKKP 235 (311)
T ss_dssp EHHHHHGSTHHHHHHHHHHHHE---EEEEEEE--TTSSSSSSS-EEEEEEEESSS
T ss_pred cchhhhccchHHHHHHHHHhhc---hhhEEeecccceecccCcCceEEEEeeccc
Confidence 86432 222222221 12222222 34567788888877664
No 25
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.56 E-value=1.4e-13 Score=129.36 Aligned_cols=125 Identities=18% Similarity=0.161 Sum_probs=95.8
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.++.+|||+|||+|.+++.++...+ .++|+|+++.+++.|++|+..++. .+.+..+|+.+.. .++||+|+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~--~~~fD~Vi 87 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNV------GLDVVMTDLFKGV--RGKFDVIL 87 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCC------ceEEEEccccccc--CCcccEEE
Confidence 4567899999999999999988743 899999999999999999987653 2578889987653 35899999
Q ss_pred EcCCCccccCCc-------------cchHHHHHHHHHHHhhcccCCCcEEEEEecCH---HHHHHHHHhccc
Q psy19 390 TDLPFGKRVGSK-------------SNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR---KHLIQALHITSA 445 (494)
Q Consensus 390 tNPPYG~r~~~~-------------~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~---~~l~~~l~~~~~ 445 (494)
+||||....... .+...++..+++++.++|+|| |+++++.+.. ..+...+.+.|.
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g-G~~~~~~~~~~~~~~~~~~l~~~gf 158 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEG-GRVQLIQSSLNGEPDTFDKLDERGF 158 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCC-CEEEEEEeccCChHHHHHHHHhCCC
Confidence 999996332110 123456788999999999999 9998876532 234555665553
No 26
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=4.5e-14 Score=132.06 Aligned_cols=96 Identities=20% Similarity=0.255 Sum_probs=78.2
Q ss_pred chHHHHHHHHHHhC---CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 295 LKPTIAYNMVRLAS---PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 295 L~e~lAa~ll~la~---~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
..+.+|+.++..+. .-.|.+|+|+|||||.+++.++...+ .+|+|+|+|+++++.+++|+... ...+.+.
T Consensus 26 Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l------~g~v~f~ 98 (198)
T COG2263 26 TPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEEL------LGDVEFV 98 (198)
T ss_pred CChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhh------CCceEEE
Confidence 44555666665553 23577899999999999999999864 68999999999999999999973 3457899
Q ss_pred eeccccccCCCCCeeEEEEcCCCccccCC
Q psy19 372 VCNVRQLCFKPACVDGIVTDLPFGKRVGS 400 (494)
Q Consensus 372 ~~Da~~l~~~~~~~D~IVtNPPYG~r~~~ 400 (494)
.+|+.+.. +.+|.+|+|||||.+...
T Consensus 99 ~~dv~~~~---~~~dtvimNPPFG~~~rh 124 (198)
T COG2263 99 VADVSDFR---GKFDTVIMNPPFGSQRRH 124 (198)
T ss_pred EcchhhcC---CccceEEECCCCcccccc
Confidence 99999864 578999999999988543
No 27
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.6e-13 Score=137.36 Aligned_cols=119 Identities=18% Similarity=0.254 Sum_probs=94.1
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCC
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP 382 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~ 382 (494)
++.-.....+..|+|.|||.|.|++.+|...|...++.+|+|..||+.|++|+..|++. .. .+...|..+- ..
T Consensus 150 Ll~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~----~~-~v~~s~~~~~-v~- 222 (300)
T COG2813 150 LLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE----NT-EVWASNLYEP-VE- 222 (300)
T ss_pred HHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC----cc-EEEEeccccc-cc-
Confidence 34434444555999999999999999999999999999999999999999999998752 11 4666676553 33
Q ss_pred CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
++||+|||||||...... ...+-.+++..+.+.|++| |.++++...
T Consensus 223 ~kfd~IisNPPfh~G~~v---~~~~~~~~i~~A~~~L~~g-GeL~iVan~ 268 (300)
T COG2813 223 GKFDLIISNPPFHAGKAV---VHSLAQEIIAAAARHLKPG-GELWIVANR 268 (300)
T ss_pred ccccEEEeCCCccCCcch---hHHHHHHHHHHHHHhhccC-CEEEEEEcC
Confidence 389999999999754332 3344567888999999999 999998773
No 28
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.53 E-value=1.2e-13 Score=155.52 Aligned_cols=154 Identities=14% Similarity=0.027 Sum_probs=113.1
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-CCCCCeeEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-FKPACVDGIV 389 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~~~~~~D~IV 389 (494)
.|.+|||+|||||++++.+|... ...|+++|+++.+++.|++|+..+|++ ..++.++++|+.+.. ....+||+||
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~---~~~v~~i~~D~~~~l~~~~~~fDlIi 613 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLS---GRQHRLIQADCLAWLKEAREQFDLIF 613 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC---ccceEEEEccHHHHHHHcCCCcCEEE
Confidence 57899999999999999999862 246999999999999999999998762 136789999987742 1135899999
Q ss_pred EcCCCccccCC---ccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHhccccceeeeeEEEccCCceEEEEE
Q psy19 390 TDLPFGKRVGS---KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFI 466 (494)
Q Consensus 390 tNPPYG~r~~~---~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~~~~l~~~~~~~~v~~Ggl~~~i~v 466 (494)
+||||-..... ..+....|..++..+.++|+|| |.+++.++... +...... + ...| ..+.+
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~g-G~l~~~~~~~~-~~~~~~~----~--------~~~g--~~~~~ 677 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPG-GTLYFSNNKRG-FKMDEEG----L--------AKLG--LKAEE 677 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCC-CEEEEEeCCcc-CChhHHH----H--------HhCC--CeEEE
Confidence 99998543211 1234566888999999999999 98877666432 2211111 0 0112 35667
Q ss_pred EeeCCCCCCCcccCccCC
Q psy19 467 LNRTADLFDYAIHGLKEK 484 (494)
Q Consensus 467 ~~~~~~~~d~~~~~~~~~ 484 (494)
+.+..+++|||...+.|.
T Consensus 678 i~~~~~~~Dhp~~~~~~~ 695 (702)
T PRK11783 678 ITAKTLPPDFARNPKIHN 695 (702)
T ss_pred EecCCCCCCCCCCcccce
Confidence 788999999999877653
No 29
>PHA03412 putative methyltransferase; Provisional
Probab=99.53 E-value=4.3e-14 Score=137.81 Aligned_cols=135 Identities=13% Similarity=0.109 Sum_probs=93.8
Q ss_pred ceecccccccccccccc--cccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC---CCCeEEEEeCCH
Q psy19 271 AYVGLPVTQTSLHRRNI--VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY---PHTFFVCGDINE 345 (494)
Q Consensus 271 ~~l~l~lsg~sL~~Rgy--~~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~---~~~~v~G~Did~ 345 (494)
.++.-...+..++.+.. .|++|.+ +|..++.. ...+.+|||||||||.|++.++... +...|+|+|+|+
T Consensus 13 ~f~~~n~~~~~~~~~~~~GqFfTP~~----iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~ 86 (241)
T PHA03412 13 LFIIENFHEGAFTNNSELGAFFTPIG----LARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNH 86 (241)
T ss_pred HHHHhhcccccccccccCCccCCCHH----HHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCH
Confidence 33333344445544322 4676665 45544322 2246799999999999999888652 346899999999
Q ss_pred HHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcCCCccccCCc----cchHHHHHHHHHHHhhcccC
Q psy19 346 KLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSK----SNNFLLYRLFLIEIGKIVRP 421 (494)
Q Consensus 346 ~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~----~~~~~ly~~fL~~l~rvLkp 421 (494)
.|++.|++|+.. +.++++|+...++ +++||+||+||||+...... .+...+...|++.+.+++++
T Consensus 87 ~Al~~Ar~n~~~----------~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~ 155 (241)
T PHA03412 87 TYYKLGKRIVPE----------ATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQ 155 (241)
T ss_pred HHHHHHHhhccC----------CEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCC
Confidence 999999998641 3688899987654 36899999999998643211 12235677788899997776
Q ss_pred C
Q psy19 422 Q 422 (494)
Q Consensus 422 g 422 (494)
|
T Consensus 156 G 156 (241)
T PHA03412 156 G 156 (241)
T ss_pred C
Confidence 5
No 30
>PRK14968 putative methyltransferase; Provisional
Probab=99.52 E-value=9.6e-13 Score=123.36 Aligned_cols=133 Identities=22% Similarity=0.243 Sum_probs=98.8
Q ss_pred HHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCC
Q psy19 305 RLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPAC 384 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~ 384 (494)
......++.+|||+|||+|.+++.++.. +..++|+|+++.+++.+++|+..++... ..+.+.++|+.+. +....
T Consensus 17 ~~~~~~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~---~~~~~~~~d~~~~-~~~~~ 90 (188)
T PRK14968 17 ENAVDKKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRN---NGVEVIRSDLFEP-FRGDK 90 (188)
T ss_pred HhhhccCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCC---cceEEEecccccc-ccccC
Confidence 3333467889999999999999998887 6899999999999999999998776411 1167888888763 34458
Q ss_pred eeEEEEcCCCccccC-------------CccchHHHHHHHHHHHhhcccCCCcEEEEEecC---HHHHHHHHHhcc
Q psy19 385 VDGIVTDLPFGKRVG-------------SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD---RKHLIQALHITS 444 (494)
Q Consensus 385 ~D~IVtNPPYG~r~~-------------~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~---~~~l~~~l~~~~ 444 (494)
||+|++||||...-. ...+....+..+++++.++|+|| |.++++.++ ...+...+.+.|
T Consensus 91 ~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~g-G~~~~~~~~~~~~~~l~~~~~~~g 165 (188)
T PRK14968 91 FDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPG-GRILLLQSSLTGEDEVLEYLEKLG 165 (188)
T ss_pred ceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCC-eEEEEEEcccCCHHHHHHHHHHCC
Confidence 999999999964211 01122445778899999999999 988887664 234555666555
No 31
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.52 E-value=1.5e-13 Score=118.17 Aligned_cols=111 Identities=19% Similarity=0.234 Sum_probs=86.4
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecc-ccccCCCCCeeEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV-RQLCFKPACVDGIV 389 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da-~~l~~~~~~~D~IV 389 (494)
|+.+|||+|||+|.++++++..+++.+++|+|+++.+++.|++|+...+. ..++.++++|+ ...... ..||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~-~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL----SDRITFVQGDAEFDPDFL-EPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT----TTTEEEEESCCHGGTTTS-SCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEECccccCcccC-CCCCEEE
Confidence 57899999999999999999977899999999999999999999965543 56789999999 333332 5799999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
++- +....-. .. +-...+++.+.+.|+|| |++++-++
T Consensus 76 ~~~-~~~~~~~--~~-~~~~~~l~~~~~~L~pg-G~lvi~~~ 112 (112)
T PF12847_consen 76 CSG-FTLHFLL--PL-DERRRVLERIRRLLKPG-GRLVINTC 112 (112)
T ss_dssp ECS-GSGGGCC--HH-HHHHHHHHHHHHHEEEE-EEEEEEE-
T ss_pred ECC-Ccccccc--ch-hHHHHHHHHHHHhcCCC-cEEEEEEC
Confidence 976 4211111 11 33456778899999999 99888653
No 32
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.52 E-value=3.9e-13 Score=139.13 Aligned_cols=111 Identities=14% Similarity=0.198 Sum_probs=90.5
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
....+|||+|||+|.+++.++..+|...++++|+++.|++.|++|++.+++. ..+...|+... . .+.||+||
T Consensus 195 ~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~------~~~~~~D~~~~-~-~~~fDlIv 266 (342)
T PRK09489 195 HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE------GEVFASNVFSD-I-KGRFDMII 266 (342)
T ss_pred cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC------CEEEEcccccc-c-CCCccEEE
Confidence 3445899999999999999999888889999999999999999999987652 24667777652 2 46899999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+||||...... .......|++++.++|+|| |+++++...
T Consensus 267 sNPPFH~g~~~---~~~~~~~~i~~a~~~Lkpg-G~L~iVan~ 305 (342)
T PRK09489 267 SNPPFHDGIQT---SLDAAQTLIRGAVRHLNSG-GELRIVANA 305 (342)
T ss_pred ECCCccCCccc---cHHHHHHHHHHHHHhcCcC-CEEEEEEeC
Confidence 99999753322 2345678899999999999 999998764
No 33
>PLN02672 methionine S-methyltransferase
Probab=99.52 E-value=5.4e-13 Score=153.72 Aligned_cols=185 Identities=16% Similarity=0.102 Sum_probs=131.2
Q ss_pred ccccccchHHHHHHHHHHhCCC--CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCC----
Q psy19 289 EFNITTLKPTIAYNMVRLASPI--PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNL---- 362 (494)
Q Consensus 289 ~~~~a~L~e~lAa~ll~la~~~--~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~---- 362 (494)
.+-|.+-.++++.. +...... ++.+|||+|||||.+++.++..++...++|+|+++.|++.|++|+..++++.
T Consensus 95 VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~ 173 (1082)
T PLN02672 95 IFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLP 173 (1082)
T ss_pred cccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccc
Confidence 35577888889888 4332111 2468999999999999999999888899999999999999999999875420
Q ss_pred -------CcccceeeeeeccccccCC-CCCeeEEEEcCCCcccc----------------------------C--Cccch
Q psy19 363 -------NRELKVSPLVCNVRQLCFK-PACVDGIVTDLPFGKRV----------------------------G--SKSNN 404 (494)
Q Consensus 363 -------~~~~~i~~~~~Da~~l~~~-~~~~D~IVtNPPYG~r~----------------------------~--~~~~~ 404 (494)
...+++.++++|+.+.... ...||+||+||||-..- + ...+.
T Consensus 174 ~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dG 253 (1082)
T PLN02672 174 VYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFG 253 (1082)
T ss_pred ccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcH
Confidence 1224689999998875311 13699999999994211 0 01456
Q ss_pred HHHHHHHHHHHhhcccCCCcEEEEEecCH--HHHH-HHHHhccccceeeeeEEEccCCceEEEEEEeeCCCCCCCcccCc
Q psy19 405 FLLYRLFLIEIGKIVRPQIGRAILLTSDR--KHLI-QALHITSALWKCRKQIKINMSGMKSFVFILNRTADLFDYAIHGL 481 (494)
Q Consensus 405 ~~ly~~fL~~l~rvLkpg~G~lvllt~~~--~~l~-~~l~~~~~l~~~~~~~~v~~Ggl~~~i~v~~~~~~~~d~~~~~~ 481 (494)
..+|++++.++.++|+|| |.+++-.+.. ..+. +.+...| .......-.+.-|..|-....+
T Consensus 254 L~~yr~i~~~a~~~L~pg-G~l~lEiG~~q~~~v~~~l~~~~g---------------f~~~~~~~~~~~~~~~~~~~~~ 317 (1082)
T PLN02672 254 LGLIARAVEEGISVIKPM-GIMIFNMGGRPGQAVCERLFERRG---------------FRITKLWQTKINQAADTDISAL 317 (1082)
T ss_pred HHHHHHHHHHHHHhccCC-CEEEEEECccHHHHHHHHHHHHCC---------------CCeeEEeeehhhhccccchHHH
Confidence 789999999999999999 9999866643 2244 3444333 2222223345566777777777
Q ss_pred cCCCCCCCC
Q psy19 482 KEKHKGKPF 490 (494)
Q Consensus 482 ~~~~~~~~~ 490 (494)
++-+|.-||
T Consensus 318 ~~~~~~~~~ 326 (1082)
T PLN02672 318 VEIEKNSRH 326 (1082)
T ss_pred HHHhhcCcc
Confidence 777765443
No 34
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.52 E-value=1.1e-12 Score=124.86 Aligned_cols=145 Identities=13% Similarity=0.135 Sum_probs=109.3
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCC
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP 382 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~ 382 (494)
+.......++.+|||+|||+|.+++.++..+++++|+|+|+++.+++.|++|++.+++ . .+.+.++|+.+++. .
T Consensus 37 l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l----~-~i~~~~~d~~~~~~-~ 110 (187)
T PRK00107 37 LAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL----K-NVTVVHGRAEEFGQ-E 110 (187)
T ss_pred HHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC----C-CEEEEeccHhhCCC-C
Confidence 3333344568899999999999999999888889999999999999999999998764 2 27899999988766 5
Q ss_pred CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH--HHHHHHHHhccccceeeeeEEEccCCc
Q psy19 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR--KHLIQALHITSALWKCRKQIKINMSGM 460 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~--~~l~~~l~~~~~l~~~~~~~~v~~Ggl 460 (494)
++||+|++|- .. + +..+++.+.++|+|| |+++++.+.. ..+..+....| |.....+.....|+
T Consensus 111 ~~fDlV~~~~-----~~---~----~~~~l~~~~~~LkpG-G~lv~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~ 175 (187)
T PRK00107 111 EKFDVVTSRA-----VA---S----LSDLVELCLPLLKPG-GRFLALKGRDPEEEIAELPKALG--GKVEEVIELTLPGL 175 (187)
T ss_pred CCccEEEEcc-----cc---C----HHHHHHHHHHhcCCC-eEEEEEeCCChHHHHHHHHHhcC--ceEeeeEEEecCCC
Confidence 7899999972 11 1 456777899999999 9999886653 22444444444 56677777666666
Q ss_pred --eEEEEEEe
Q psy19 461 --KSFVFILN 468 (494)
Q Consensus 461 --~~~i~v~~ 468 (494)
+.++.+++
T Consensus 176 ~~~~~~~~~~ 185 (187)
T PRK00107 176 DGERHLVIIR 185 (187)
T ss_pred CCcEEEEEEe
Confidence 34555554
No 35
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.49 E-value=2e-13 Score=134.06 Aligned_cols=113 Identities=23% Similarity=0.366 Sum_probs=79.7
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~ 381 (494)
++.+....+|.+|||+|||||.+.++++.. .+...|+|+|+++.|++.|++.+...+. .+++++++|+.++|++
T Consensus 39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-----~~i~~v~~da~~lp~~ 113 (233)
T PF01209_consen 39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-----QNIEFVQGDAEDLPFP 113 (233)
T ss_dssp HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTTB--S-
T ss_pred HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-----CCeeEEEcCHHHhcCC
Confidence 344556778999999999999999988765 4567999999999999999999987653 2689999999999999
Q ss_pred CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 382 PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 382 ~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+++||+|++ -||.+.-. + ..+.++++.|+|||| |+++++
T Consensus 114 d~sfD~v~~--~fglrn~~--d----~~~~l~E~~RVLkPG-G~l~il 152 (233)
T PF01209_consen 114 DNSFDAVTC--SFGLRNFP--D----RERALREMYRVLKPG-GRLVIL 152 (233)
T ss_dssp TT-EEEEEE--ES-GGG-S--S----HHHHHHHHHHHEEEE-EEEEEE
T ss_pred CCceeEEEH--HhhHHhhC--C----HHHHHHHHHHHcCCC-eEEEEe
Confidence 999999998 35554322 2 456788999999999 998876
No 36
>PHA03411 putative methyltransferase; Provisional
Probab=99.49 E-value=2.3e-13 Score=135.52 Aligned_cols=144 Identities=15% Similarity=0.184 Sum_probs=104.0
Q ss_pred CcceecccccccccccccccccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHH
Q psy19 269 NEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLV 348 (494)
Q Consensus 269 ~~~~l~l~lsg~sL~~Rgy~~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al 348 (494)
+.-.|+-...|..+|.|| .|++|.++ +..++ .....+.+|||+|||+|.+++.++...++..++|+|+++.|+
T Consensus 29 ~~~~v~~~~~g~~~~~~G-~FfTP~~i----~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al 101 (279)
T PHA03411 29 EKEFCYNNYHGDGLGGSG-AFFTPEGL----AWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFA 101 (279)
T ss_pred cHHHHHHhcccccccCce-eEcCCHHH----HHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 445566667777788876 35666555 43332 233456799999999999998887765567999999999999
Q ss_pred HHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcCCCccccCCccch-----------HHH-HHHHHHHHh
Q psy19 349 LKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNN-----------FLL-YRLFLIEIG 416 (494)
Q Consensus 349 ~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~-----------~~l-y~~fL~~l~ 416 (494)
+.|++|+. .+.++++|+.++.. ..+||+||+||||+..-...... ..+ +..++....
T Consensus 102 ~~Ar~n~~----------~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~ 170 (279)
T PHA03411 102 RIGKRLLP----------EAEWITSDVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVG 170 (279)
T ss_pred HHHHHhCc----------CCEEEECchhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhH
Confidence 99998743 24688999988753 35899999999998632211111 111 467888999
Q ss_pred hcccCCCcEEEEEec
Q psy19 417 KIVRPQIGRAILLTS 431 (494)
Q Consensus 417 rvLkpg~G~lvllt~ 431 (494)
.+|+|+ |.+.++..
T Consensus 171 ~~L~p~-G~~~~~ys 184 (279)
T PHA03411 171 YFIVPT-GSAGFAYS 184 (279)
T ss_pred heecCC-ceEEEEEe
Confidence 999999 87776544
No 37
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.45 E-value=7.6e-13 Score=127.15 Aligned_cols=125 Identities=18% Similarity=0.166 Sum_probs=96.1
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecc-cccc--CCCCCeeE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV-RQLC--FKPACVDG 387 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da-~~l~--~~~~~~D~ 387 (494)
++.+|||+|||+|.+++.++...|+..++|+|+++.+++.|++|+..++. .++.++++|+ ..++ +++++||.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-----~~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-----TNLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-----CCEEEEecCHHHHHHHHcCccccce
Confidence 56799999999999999998888888999999999999999999987653 3478999999 6665 55678999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
|+++.|..............+..+++++.++|+|| |.+++.++....+...+.
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~l~i~~~~~~~~~~~~~ 167 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPG-GEIHFATDWEGYAEYMLE 167 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHcCCC-CEEEEEcCCHHHHHHHHH
Confidence 99986532111111111123567888999999999 999999887765555444
No 38
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.44 E-value=4.6e-13 Score=134.84 Aligned_cols=143 Identities=19% Similarity=0.171 Sum_probs=96.5
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-c-C-CCCCeeE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-C-F-KPACVDG 387 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~-~-~~~~~D~ 387 (494)
.|.+|||.||-||++++.|+..+ ...++++|.+..+++.|++|+..||++ ...+.+++.|+++. . . ..++||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~---~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLD---LDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-C---CTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC---ccceEEEecCHHHHHHHHhcCCCCCE
Confidence 47899999999999999988762 247999999999999999999999863 24678999999874 1 1 2368999
Q ss_pred EEEcCC-CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH----HHHHHHHHhccccceeeeeEEEccCCceE
Q psy19 388 IVTDLP-FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR----KHLIQALHITSALWKCRKQIKINMSGMKS 462 (494)
Q Consensus 388 IVtNPP-YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~----~~l~~~l~~~~~l~~~~~~~~v~~Ggl~~ 462 (494)
||+||| |... ..++..-|..++..+.++|+|| |.+++.+++. +.+.+.+.... +
T Consensus 199 IIlDPPsF~k~---~~~~~~~y~~L~~~a~~ll~~g-G~l~~~scs~~i~~~~l~~~~~~~a-----------------~ 257 (286)
T PF10672_consen 199 IILDPPSFAKS---KFDLERDYKKLLRRAMKLLKPG-GLLLTCSCSHHISPDFLLEAVAEAA-----------------R 257 (286)
T ss_dssp EEE--SSEESS---TCEHHHHHHHHHHHHHHTEEEE-EEEEEEE--TTS-HHHHHHHHHHHH-----------------H
T ss_pred EEECCCCCCCC---HHHHHHHHHHHHHHHHHhcCCC-CEEEEEcCCcccCHHHHHHHHHHhC-----------------c
Confidence 999999 5432 3456778999999999999999 9988877753 33444444321 1
Q ss_pred EEEEEeeCCCCCCCcc
Q psy19 463 FVFILNRTADLFDYAI 478 (494)
Q Consensus 463 ~i~v~~~~~~~~d~~~ 478 (494)
.+...++..+++|||.
T Consensus 258 ~~~~~~~~~~p~df~~ 273 (286)
T PF10672_consen 258 EVEFIERLGQPPDFPD 273 (286)
T ss_dssp HCEEEEEEE-------
T ss_pred cceEeeeecccccccc
Confidence 3455688999999998
No 39
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.43 E-value=1.9e-12 Score=124.20 Aligned_cols=123 Identities=11% Similarity=0.067 Sum_probs=86.5
Q ss_pred cchHHHHHHHHHHh-CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 294 TLKPTIAYNMVRLA-SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 294 ~L~e~lAa~ll~la-~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
|..+.+..+++... ...++.+|||+|||||.++++++..+. ..|+++|+++.+++.|++|++.+++ .++.+++
T Consensus 35 p~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~-----~~v~~~~ 108 (199)
T PRK10909 35 PTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKA-----GNARVVN 108 (199)
T ss_pred cCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCC-----CcEEEEE
Confidence 34455544454433 234678999999999999998776653 6899999999999999999998864 2478999
Q ss_pred eccccc-cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHh--hcccCCCcEEEEEecC
Q psy19 373 CNVRQL-CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIG--KIVRPQIGRAILLTSD 432 (494)
Q Consensus 373 ~Da~~l-~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~--rvLkpg~G~lvllt~~ 432 (494)
+|+.+. +.....||+|++||||...+ +...+..+. .+|.|+ +.+++-++.
T Consensus 109 ~D~~~~l~~~~~~fDlV~~DPPy~~g~---------~~~~l~~l~~~~~l~~~-~iv~ve~~~ 161 (199)
T PRK10909 109 TNALSFLAQPGTPHNVVFVDPPFRKGL---------LEETINLLEDNGWLADE-ALIYVESEV 161 (199)
T ss_pred chHHHHHhhcCCCceEEEECCCCCCCh---------HHHHHHHHHHCCCcCCC-cEEEEEecC
Confidence 998764 22234699999999995321 233333333 347777 765555443
No 40
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.42 E-value=1.6e-12 Score=118.71 Aligned_cols=108 Identities=16% Similarity=0.236 Sum_probs=88.9
Q ss_pred CCCCEEEEEcCCcChHHHHHH-hcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--CCCCCee
Q psy19 310 IPGDVFLDPMCGGGTIPVECS-LSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--FKPACVD 386 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA-~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~~~~~~D 386 (494)
+.+.+|||+|||+|.+++.++ ..+++..++|+|+++.+++.|+.+++..+. . ++++.++|+.+++ ++ +.||
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~----~-ni~~~~~d~~~l~~~~~-~~~D 75 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL----D-NIEFIQGDIEDLPQELE-EKFD 75 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS----T-TEEEEESBTTCGCGCSS-TTEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc----c-ccceEEeehhccccccC-CCee
Confidence 467899999999999999999 567789999999999999999999998764 2 6799999999986 54 6899
Q ss_pred EEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 387 GIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+|++++++. ... + ...+++.+.++|+++ |.+++....
T Consensus 76 ~I~~~~~l~-~~~---~----~~~~l~~~~~~lk~~-G~~i~~~~~ 112 (152)
T PF13847_consen 76 IIISNGVLH-HFP---D----PEKVLKNIIRLLKPG-GILIISDPN 112 (152)
T ss_dssp EEEEESTGG-GTS---H----HHHHHHHHHHHEEEE-EEEEEEEEE
T ss_pred EEEEcCchh-hcc---C----HHHHHHHHHHHcCCC-cEEEEEECC
Confidence 999998872 111 2 235666899999999 998887666
No 41
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.42 E-value=1.8e-12 Score=138.24 Aligned_cols=125 Identities=20% Similarity=0.214 Sum_probs=98.6
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC 379 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~ 379 (494)
+..++.+..+.+|.+|||+|||+|+.++.++...++..|+|+|+++.+++.+++|++.+|+ .+.++++|+..++
T Consensus 233 s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~------~~~~~~~D~~~~~ 306 (427)
T PRK10901 233 AQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL------KATVIVGDARDPA 306 (427)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEcCcccch
Confidence 3344455677889999999999999999988876667999999999999999999998764 1468899998763
Q ss_pred --CCCCCeeEEEEcCCCccc-c----------CCcc---chHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 380 --FKPACVDGIVTDLPFGKR-V----------GSKS---NNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 380 --~~~~~~D~IVtNPPYG~r-~----------~~~~---~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+..++||.|++|||+... . .... .+..++..++..+.++|+|| |++++.|+
T Consensus 307 ~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpG-G~lvystc 373 (427)
T PRK10901 307 QWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPG-GTLLYATC 373 (427)
T ss_pred hhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEeC
Confidence 234689999999997421 0 0111 13456788999999999999 99999887
No 42
>KOG3420|consensus
Probab=99.41 E-value=5.4e-13 Score=119.35 Aligned_cols=102 Identities=23% Similarity=0.316 Sum_probs=85.9
Q ss_pred cccchHHHHHHHHHHhC----CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccc
Q psy19 292 ITTLKPTIAYNMVRLAS----PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELK 367 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~----~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~ 367 (494)
..+.+|.+|+.|+.... --.|..++|+|||.|-+.+.+++. ....++|+||||++++++.+|++...+ .
T Consensus 25 QY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~-~~e~vlGfDIdpeALEIf~rNaeEfEv------q 97 (185)
T KOG3420|consen 25 QYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP-KNESVLGFDIDPEALEIFTRNAEEFEV------Q 97 (185)
T ss_pred hCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC-CCceEEeeecCHHHHHHHhhchHHhhh------h
Confidence 45789999999998763 236789999999999999766543 446899999999999999999997755 3
Q ss_pred eeeeeeccccccCCCCCeeEEEEcCCCccccCC
Q psy19 368 VSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGS 400 (494)
Q Consensus 368 i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~ 400 (494)
+++.++|+.++.+..+.||.+|.|||||.+...
T Consensus 98 idlLqcdildle~~~g~fDtaviNppFGTk~~~ 130 (185)
T KOG3420|consen 98 IDLLQCDILDLELKGGIFDTAVINPPFGTKKKG 130 (185)
T ss_pred hheeeeeccchhccCCeEeeEEecCCCCccccc
Confidence 479999999997777899999999999988754
No 43
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.41 E-value=1.8e-12 Score=123.63 Aligned_cols=122 Identities=16% Similarity=0.272 Sum_probs=96.5
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc---CCCCCeeE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC---FKPACVDG 387 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~---~~~~~~D~ 387 (494)
...++||+|||+|.+++.+|..+|+..++|+|+++.+++.|++|+...++ .++.++++|+.+++ ++++++|.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l-----~ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL-----KNLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC-----CCEEEEccCHHHHHHhhCCCCceeE
Confidence 45689999999999999999999999999999999999999999987654 25789999998763 34468999
Q ss_pred EEEcCC--CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHH
Q psy19 388 IVTDLP--FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQAL 440 (494)
Q Consensus 388 IVtNPP--YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l 440 (494)
|++|+| |...... ...-++..+++++.++|+|| |.+.+.|.....+...+
T Consensus 91 v~~~~pdpw~k~~h~--~~r~~~~~~l~~~~r~Lkpg-G~l~~~td~~~~~~~~~ 142 (194)
T TIGR00091 91 VFLNFPDPWPKKRHN--KRRITQPHFLKEYANVLKKG-GVIHFKTDNEPLFEDML 142 (194)
T ss_pred EEEECCCcCCCCCcc--ccccCCHHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHH
Confidence 999975 5332111 11223567888999999999 99999988776555443
No 44
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.40 E-value=1.4e-11 Score=119.94 Aligned_cols=117 Identities=19% Similarity=0.291 Sum_probs=93.9
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC 379 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~ 379 (494)
..++.....+++.+|||+|||+|.+++.++... ++..++|+|+++.+++.|+.|+...+. .++.++++|+..++
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~ 109 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-----HNVELVHGNAMELP 109 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CceEEEEechhcCC
Confidence 445666677788999999999999999888764 567999999999999999999986543 35789999999888
Q ss_pred CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 380 FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 380 ~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+++++||+|+++.++.. . .+ +..+++++.++|+|| |+++++..
T Consensus 110 ~~~~~fD~V~~~~~l~~-~---~~----~~~~l~~~~~~Lk~g-G~l~~~~~ 152 (231)
T TIGR02752 110 FDDNSFDYVTIGFGLRN-V---PD----YMQVLREMYRVVKPG-GKVVCLET 152 (231)
T ss_pred CCCCCccEEEEeccccc-C---CC----HHHHHHHHHHHcCcC-eEEEEEEC
Confidence 77789999999865432 1 12 346777899999999 99887643
No 45
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.38 E-value=2e-11 Score=115.45 Aligned_cols=132 Identities=14% Similarity=0.094 Sum_probs=100.0
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
...+.+.+.++......++.+|||+|||+|.+++.++..+++.+++|+|+++.+++.|++|+..+++ ..+.+.++
T Consensus 14 ~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-----~~i~~~~~ 88 (187)
T PRK08287 14 MTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-----GNIDIIPG 88 (187)
T ss_pred CchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCeEEEec
Confidence 4566666667777777788999999999999999999888888999999999999999999987754 24678888
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec---CHHHHHHHHHhcc
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS---DRKHLIQALHITS 444 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~---~~~~l~~~l~~~~ 444 (494)
|+.. ++. .+||+|+++-..+ . +..+++.+.++|+|| |++++... +...+.+.+.+.+
T Consensus 89 d~~~-~~~-~~~D~v~~~~~~~-------~----~~~~l~~~~~~Lk~g-G~lv~~~~~~~~~~~~~~~l~~~g 148 (187)
T PRK08287 89 EAPI-ELP-GKADAIFIGGSGG-------N----LTAIIDWSLAHLHPG-GRLVLTFILLENLHSALAHLEKCG 148 (187)
T ss_pred Cchh-hcC-cCCCEEEECCCcc-------C----HHHHHHHHHHhcCCC-eEEEEEEecHhhHHHHHHHHHHCC
Confidence 8743 333 5799999974311 1 345677899999999 99877542 3333445555544
No 46
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=99.38 E-value=1.9e-12 Score=141.43 Aligned_cols=140 Identities=15% Similarity=0.175 Sum_probs=91.5
Q ss_pred cccccccchHHHHHHHHHHhCC---CCCCEEEEEcCCcChHHHHHHhcCC--------CCeEEEEeCCHHHHHHHHHHHH
Q psy19 288 VEFNITTLKPTIAYNMVRLASP---IPGDVFLDPMCGGGTIPVECSLSYP--------HTFFVCGDINEKLVLKTQANVL 356 (494)
Q Consensus 288 ~~~~~a~L~e~lAa~ll~la~~---~~g~~VLDP~CGSGtilIEAA~~~~--------~~~v~G~Did~~al~~Ar~Nl~ 356 (494)
.+++|..+.+.++..++...+. ..+.+|+||+||+|.|++.++...+ ...++|+|+|+.++..|+.|+.
T Consensus 5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence 3555555544444433322111 1346899999999999999887642 2578999999999999999998
Q ss_pred hccCCCCcccceeeeeecccccc-----CCCCCeeEEEEcCCCccccCCc------------------------------
Q psy19 357 HNSGNLNRELKVSPLVCNVRQLC-----FKPACVDGIVTDLPFGKRVGSK------------------------------ 401 (494)
Q Consensus 357 ~~g~~~~~~~~i~~~~~Da~~l~-----~~~~~~D~IVtNPPYG~r~~~~------------------------------ 401 (494)
..+. ..+.+.+.|..... -..+.||+||+||||+..-...
T Consensus 85 ~~~~-----~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
T TIGR02987 85 EFAL-----LEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLP 159 (524)
T ss_pred hcCC-----CCceeeecccccccccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcc
Confidence 6641 11244555533211 1124799999999998532100
Q ss_pred --------cchHHHHHHHH-HHHhhcccCCCcEEEEEecCH
Q psy19 402 --------SNNFLLYRLFL-IEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 402 --------~~~~~ly~~fL-~~l~rvLkpg~G~lvllt~~~ 433 (494)
.+...+|..|+ +.+.++|++| |++++|+|..
T Consensus 160 ~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~-G~~~~I~P~s 199 (524)
T TIGR02987 160 YSDPIRKYAGVGTEYSRVFEEISLEIANKN-GYVSIISPAS 199 (524)
T ss_pred hhhhhcccCCcccHHHHHHHHHHHHhcCCC-CEEEEEEChH
Confidence 01123566555 6688999999 9999999954
No 47
>KOG2904|consensus
Probab=99.38 E-value=6.6e-12 Score=123.10 Aligned_cols=137 Identities=10% Similarity=0.093 Sum_probs=104.6
Q ss_pred cccccchHHHHHHHHHHh---CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccc
Q psy19 290 FNITTLKPTIAYNMVRLA---SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNREL 366 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la---~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~ 366 (494)
+-|-|-.|.+..+++... .+-.+..+||.|||||.|++..+...|.++++++|.++.|+..|.+|+..+++ .+
T Consensus 124 lIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l----~g 199 (328)
T KOG2904|consen 124 LIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL----SG 199 (328)
T ss_pred eecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh----cC
Confidence 457777888888877643 34566789999999999999999888889999999999999999999998876 44
Q ss_pred ceeee----eeccccc-cCCCCCeeEEEEcCCCccccC------------------CccchHHHHHHHHHHHhhcccCCC
Q psy19 367 KVSPL----VCNVRQL-CFKPACVDGIVTDLPFGKRVG------------------SKSNNFLLYRLFLIEIGKIVRPQI 423 (494)
Q Consensus 367 ~i~~~----~~Da~~l-~~~~~~~D~IVtNPPYG~r~~------------------~~~~~~~ly~~fL~~l~rvLkpg~ 423 (494)
++.++ ..|...- +...+.+|++|+||||-..-. ...+..+.|..++.-+.|.|+||
T Consensus 200 ~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~g- 278 (328)
T KOG2904|consen 200 RIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPG- 278 (328)
T ss_pred ceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccC-
Confidence 45555 4555443 344579999999999953211 11233455667888899999998
Q ss_pred cEEEEEec
Q psy19 424 GRAILLTS 431 (494)
Q Consensus 424 G~lvllt~ 431 (494)
|.+++-+.
T Consensus 279 g~~~le~~ 286 (328)
T KOG2904|consen 279 GFEQLELV 286 (328)
T ss_pred CeEEEEec
Confidence 98888655
No 48
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.37 E-value=4.4e-12 Score=126.88 Aligned_cols=121 Identities=18% Similarity=0.143 Sum_probs=94.6
Q ss_pred HhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCC
Q psy19 306 LASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPAC 384 (494)
Q Consensus 306 la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~ 384 (494)
+..+++|.+|||.|||+|+.++.+|... +...|+++|+++.+++.+++|++.+|+ ..+.+.+.|+..++...+.
T Consensus 66 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-----~~v~~~~~D~~~~~~~~~~ 140 (264)
T TIGR00446 66 ALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-----LNVAVTNFDGRVFGAAVPK 140 (264)
T ss_pred HhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-----CcEEEecCCHHHhhhhccC
Confidence 4467889999999999999998877653 235899999999999999999998875 2468899998876544457
Q ss_pred eeEEEEcCCCc-ccc--C--------Cc---cchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 385 VDGIVTDLPFG-KRV--G--------SK---SNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 385 ~D~IVtNPPYG-~r~--~--------~~---~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
||.|++|||+. ... . .. ..+..+...+|..+.++|||| |++++.|+.
T Consensus 141 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg-G~lvYstcs 201 (264)
T TIGR00446 141 FDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPG-GVLVYSTCS 201 (264)
T ss_pred CCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEeCC
Confidence 99999999963 111 0 00 113346678999999999999 999988774
No 49
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.37 E-value=1.6e-11 Score=116.12 Aligned_cols=103 Identities=13% Similarity=0.075 Sum_probs=85.4
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
++.+|||+|||+|.+++.+|..+++.+++|+|+++.+++.+++|++.+++ .++.++++|+.+++. .++||+|++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-----~~i~~i~~d~~~~~~-~~~fD~I~s 115 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-----NNVEIVNGRAEDFQH-EEQFDVITS 115 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-----CCeEEEecchhhccc-cCCccEEEe
Confidence 47899999999999999998888888999999999999999999997764 237899999988743 468999999
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
|. + . + +..+++.+.++|+|| |++++....
T Consensus 116 ~~-~----~---~----~~~~~~~~~~~Lkpg-G~lvi~~~~ 144 (181)
T TIGR00138 116 RA-L----A---S----LNVLLELTLNLLKVG-GYFLAYKGK 144 (181)
T ss_pred hh-h----h---C----HHHHHHHHHHhcCCC-CEEEEEcCC
Confidence 75 1 1 2 345666789999999 998887663
No 50
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.36 E-value=5.8e-12 Score=119.98 Aligned_cols=110 Identities=15% Similarity=0.063 Sum_probs=80.2
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-c-C-CCC-Ce
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-C-F-KPA-CV 385 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~-~-~~~-~~ 385 (494)
-.+.+|||+|||||++++||+.+.. ..++++|+++.+++.+++|++.++. ..++.++++|+... . + ... .+
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~----~~~~~~~~~D~~~~l~~~~~~~~~~ 122 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKS----GEQAEVVRNSALRALKFLAKKPTFD 122 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCC----cccEEEEehhHHHHHHHhhccCCCc
Confidence 3578999999999999999999853 4899999999999999999998865 34578999999653 2 2 112 48
Q ss_pred eEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 386 DGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 386 D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
|+|+.||||+... ...++..+.. ..+|+++ |.+++-.+.
T Consensus 123 dvv~~DPPy~~~~-----~~~~l~~l~~--~~~l~~~-~iiv~E~~~ 161 (189)
T TIGR00095 123 NVIYLDPPFFNGA-----LQALLELCEN--NWILEDT-VLIVVEEDR 161 (189)
T ss_pred eEEEECcCCCCCc-----HHHHHHHHHH--CCCCCCC-eEEEEEecC
Confidence 9999999998532 2333332211 3467777 765554443
No 51
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.36 E-value=3.1e-12 Score=121.29 Aligned_cols=126 Identities=19% Similarity=0.238 Sum_probs=89.2
Q ss_pred cchHHHHHHHHHHhCC--CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 294 TLKPTIAYNMVRLASP--IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~--~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
|+...+-.+|.++.+. -.|.+|||+|||||.+++||+.++. ..++.+|.|+.++...++|++..+. ...+.++
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~----~~~~~v~ 97 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGL----EDKIRVI 97 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-----GGGEEEE
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCC----Ccceeee
Confidence 4445555566665554 3789999999999999999999853 5899999999999999999998764 4467888
Q ss_pred eeccccc-c-C--CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHh--hcccCCCcEEEEEecCH
Q psy19 372 VCNVRQL-C-F--KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIG--KIVRPQIGRAILLTSDR 433 (494)
Q Consensus 372 ~~Da~~l-~-~--~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~--rvLkpg~G~lvllt~~~ 433 (494)
..|+... + . ....||+|..||||..... |..++..+. .+|+++ |.+++-++..
T Consensus 98 ~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~--------~~~~l~~l~~~~~l~~~-~~ii~E~~~~ 156 (183)
T PF03602_consen 98 KGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLY--------YEELLELLAENNLLNED-GLIIIEHSKK 156 (183)
T ss_dssp ESSHHHHHHHHHHCTS-EEEEEE--STTSCHH--------HHHHHHHHHHTTSEEEE-EEEEEEEETT
T ss_pred ccCHHHHHHhhcccCCCceEEEECCCcccchH--------HHHHHHHHHHCCCCCCC-EEEEEEecCC
Confidence 8996544 1 2 3568999999999986421 345555565 689988 8877766554
No 52
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.36 E-value=1.4e-11 Score=129.11 Aligned_cols=133 Identities=11% Similarity=0.124 Sum_probs=94.6
Q ss_pred ccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 291 NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 291 ~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
.+....+.+...+..++...++.+|||+|||+|++++++|.. +..++|+|+++.+++.|++|++.+++ .++.+
T Consensus 213 ~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~-----~~~~~ 285 (374)
T TIGR02085 213 TNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGL-----DNLSF 285 (374)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCC-----CcEEE
Confidence 344455555555555444345679999999999999999965 57899999999999999999998865 25789
Q ss_pred eeeccccccC-CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHhc
Q psy19 371 LVCNVRQLCF-KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHIT 443 (494)
Q Consensus 371 ~~~Da~~l~~-~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~~ 443 (494)
.++|+.+... ....||+||+||||. |.. ..++..+. .++|+ +++.+++++..+.+.+...
T Consensus 286 ~~~d~~~~~~~~~~~~D~vi~DPPr~---G~~-------~~~l~~l~-~~~p~--~ivyvsc~p~TlaRDl~~L 346 (374)
T TIGR02085 286 AALDSAKFATAQMSAPELVLVNPPRR---GIG-------KELCDYLS-QMAPK--FILYSSCNAQTMAKDIAEL 346 (374)
T ss_pred EECCHHHHHHhcCCCCCEEEECCCCC---CCc-------HHHHHHHH-hcCCC--eEEEEEeCHHHHHHHHHHh
Confidence 9999976521 124699999999973 322 12333343 25664 5777778887777766643
No 53
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.36 E-value=5.4e-11 Score=111.72 Aligned_cols=122 Identities=19% Similarity=0.182 Sum_probs=99.4
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
..++.+-+..+....+++|+.++|.|||||++.+|+|..+|..+++++|.++++++..++|+...|+ +++.++.+
T Consensus 17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-----~n~~vv~g 91 (187)
T COG2242 17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-----DNLEVVEG 91 (187)
T ss_pred CcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-----CcEEEEec
Confidence 5788888888888889999999999999999999999999999999999999999999999998875 45789999
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
|+-+.-....++|.|+.. |. .. +..+++.+...|+|| |++++=.-..
T Consensus 92 ~Ap~~L~~~~~~daiFIG-------Gg-~~----i~~ile~~~~~l~~g-grlV~naitl 138 (187)
T COG2242 92 DAPEALPDLPSPDAIFIG-------GG-GN----IEEILEAAWERLKPG-GRLVANAITL 138 (187)
T ss_pred cchHhhcCCCCCCEEEEC-------CC-CC----HHHHHHHHHHHcCcC-CeEEEEeecH
Confidence 987762111279998772 22 33 345556788999999 9999854443
No 54
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.36 E-value=1.2e-11 Score=126.70 Aligned_cols=128 Identities=12% Similarity=0.159 Sum_probs=90.4
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
+.+.+...+..+....++.+|||+|||+|++++.+|.. +..|+|+|+++.|++.|++|++.+++ .+++++++|
T Consensus 157 ~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l-----~~v~~~~~D 229 (315)
T PRK03522 157 VAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGL-----TNVQFQALD 229 (315)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEEcC
Confidence 34444444444444345689999999999999999985 67999999999999999999998765 357899999
Q ss_pred cccccC-CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHh
Q psy19 375 VRQLCF-KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHI 442 (494)
Q Consensus 375 a~~l~~-~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~ 442 (494)
+.++.. ..+.||+||+|||+ .+.... +.. .+. -+.| ++++++++++..+.+.+..
T Consensus 230 ~~~~~~~~~~~~D~Vv~dPPr---~G~~~~---~~~----~l~-~~~~--~~ivyvsc~p~t~~rd~~~ 285 (315)
T PRK03522 230 STQFATAQGEVPDLVLVNPPR---RGIGKE---LCD----YLS-QMAP--RFILYSSCNAQTMAKDLAH 285 (315)
T ss_pred HHHHHHhcCCCCeEEEECCCC---CCccHH---HHH----HHH-HcCC--CeEEEEECCcccchhHHhh
Confidence 987632 23579999999994 332211 111 122 2344 4678888887666665554
No 55
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.36 E-value=4.9e-11 Score=119.09 Aligned_cols=117 Identities=16% Similarity=0.188 Sum_probs=88.8
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~ 381 (494)
++.++...++.+|||+|||+|.+++.++... +...++|+|+++.|++.|+++...... ....++.++++|+.++|++
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~--~~~~~i~~~~~d~~~lp~~ 142 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK--SCYKNIEWIEGDATDLPFD 142 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh--ccCCCeEEEEcccccCCCC
Confidence 3445567788999999999999998887653 457999999999999999887642110 1123578999999999998
Q ss_pred CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 382 PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 382 ~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+++||+|+++--+ +. ..+ ...+++++.|+|||| |+++++.
T Consensus 143 ~~sfD~V~~~~~l--~~--~~d----~~~~l~ei~rvLkpG-G~l~i~d 182 (261)
T PLN02233 143 DCYFDAITMGYGL--RN--VVD----RLKAMQEMYRVLKPG-SRVSILD 182 (261)
T ss_pred CCCEeEEEEeccc--cc--CCC----HHHHHHHHHHHcCcC-cEEEEEE
Confidence 8899999986322 21 112 245777999999999 9988864
No 56
>PLN02244 tocopherol O-methyltransferase
Probab=99.35 E-value=1.2e-11 Score=128.09 Aligned_cols=119 Identities=18% Similarity=0.128 Sum_probs=94.7
Q ss_pred HHHHHHHHhCC-----CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 299 IAYNMVRLASP-----IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 299 lAa~ll~la~~-----~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
+...++..++. .++.+|||+|||+|.++..++..+ ++.++|+|+++.+++.|++++...++ ..++.++++
T Consensus 101 ~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~----~~~v~~~~~ 175 (340)
T PLN02244 101 MIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGL----SDKVSFQVA 175 (340)
T ss_pred HHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEc
Confidence 34445666665 678899999999999999988766 67999999999999999999987654 346789999
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
|+.++++++++||+|+++--+. .+ .+ ...+++++.++|||| |++++.+.
T Consensus 176 D~~~~~~~~~~FD~V~s~~~~~-h~---~d----~~~~l~e~~rvLkpG-G~lvi~~~ 224 (340)
T PLN02244 176 DALNQPFEDGQFDLVWSMESGE-HM---PD----KRKFVQELARVAAPG-GRIIIVTW 224 (340)
T ss_pred CcccCCCCCCCccEEEECCchh-cc---CC----HHHHHHHHHHHcCCC-cEEEEEEe
Confidence 9999988888999999954321 11 12 246777899999999 99988653
No 57
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.35 E-value=2.1e-11 Score=106.06 Aligned_cols=115 Identities=19% Similarity=0.155 Sum_probs=90.2
Q ss_pred HHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 298 TIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 298 ~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
.+...++....+.++.+|||+|||+|.+++.++..++...++|+|+++.+++.|++|+..++. .++.+..+|+..
T Consensus 6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 80 (124)
T TIGR02469 6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-----SNIVIVEGDAPE 80 (124)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-----CceEEEeccccc
Confidence 344556666677778899999999999999999988878999999999999999999987654 246788888765
Q ss_pred c-cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 378 L-CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 378 l-~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
. +....+||+|+++.+.. .+..+++.+.++|+|| |.+++-
T Consensus 81 ~~~~~~~~~D~v~~~~~~~-----------~~~~~l~~~~~~Lk~g-G~li~~ 121 (124)
T TIGR02469 81 ALEDSLPEPDRVFIGGSGG-----------LLQEILEAIWRRLRPG-GRIVLN 121 (124)
T ss_pred cChhhcCCCCEEEECCcch-----------hHHHHHHHHHHHcCCC-CEEEEE
Confidence 3 22235899999964321 2457788999999999 988764
No 58
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.34 E-value=3.1e-11 Score=115.41 Aligned_cols=129 Identities=19% Similarity=0.134 Sum_probs=98.5
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
.++.+.+..+....+.++..|||+|||+|.+++++|... +..+++++|+++.+++.|++|++.+++ ..++.++.+
T Consensus 24 t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~----~~~v~~~~~ 99 (198)
T PRK00377 24 TKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV----LNNIVLIKG 99 (198)
T ss_pred CHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCCeEEEEe
Confidence 446666666677788899999999999999999998754 457899999999999999999998764 245678889
Q ss_pred ccccc-cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHH
Q psy19 374 NVRQL-CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQA 439 (494)
Q Consensus 374 Da~~l-~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~ 439 (494)
|+.+. +...+.||.|+++.. ... +..+++.+.++|+|| |++++.+.....+.+.
T Consensus 100 d~~~~l~~~~~~~D~V~~~~~-------~~~----~~~~l~~~~~~Lkpg-G~lv~~~~~~~~~~~~ 154 (198)
T PRK00377 100 EAPEILFTINEKFDRIFIGGG-------SEK----LKEIISASWEIIKKG-GRIVIDAILLETVNNA 154 (198)
T ss_pred chhhhHhhcCCCCCEEEECCC-------ccc----HHHHHHHHHHHcCCC-cEEEEEeecHHHHHHH
Confidence 98764 222358999999642 112 456777899999999 9998866665434443
No 59
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.34 E-value=8.1e-12 Score=133.26 Aligned_cols=124 Identities=13% Similarity=0.102 Sum_probs=97.4
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F 380 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~ 380 (494)
+..+.++.+|.+|||+|||+|+..+.+|... ++..|+|+|+++.+++.+++|++..|+ ..+.+.++|+..++ +
T Consensus 229 ~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-----~~v~~~~~Da~~l~~~ 303 (431)
T PRK14903 229 VPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-----SSIEIKIADAERLTEY 303 (431)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CeEEEEECchhhhhhh
Confidence 3345678899999999999999988777653 457999999999999999999998875 23688999998875 3
Q ss_pred CCCCeeEEEEcCCCcc-cc-CCc------------cchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 381 KPACVDGIVTDLPFGK-RV-GSK------------SNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~-r~-~~~------------~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
..++||.|++|||+.. .. ... ..+..++.++|..+.++|+|| |++++.|+.
T Consensus 304 ~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG-G~LvYsTCs 368 (431)
T PRK14903 304 VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG-GILLYSTCT 368 (431)
T ss_pred hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEECC
Confidence 3468999999999831 11 000 123456788999999999999 999998884
No 60
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=2.4e-11 Score=122.47 Aligned_cols=132 Identities=21% Similarity=0.253 Sum_probs=92.1
Q ss_pred chHHHHHHHHHHhC-CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~-~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
..||.+.++-.+.. .++|.+|||.|||||-++|.|++.+. ..++|+|+||.|++.|+.|++.|++.. .+.....
T Consensus 145 ~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~----~~~~~~~ 219 (300)
T COG2264 145 THPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVEL----LVQAKGF 219 (300)
T ss_pred CChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCch----hhhcccc
Confidence 44555555555543 35889999999999999999998843 469999999999999999999998731 1222333
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE--EecC-HHHHHHHHHhcc
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL--LTSD-RKHLIQALHITS 444 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl--lt~~-~~~l~~~l~~~~ 444 (494)
+....+ ..+.||+||+|- +.+....+...+.+.|+|| |++++ |..+ .+.+.+++...+
T Consensus 220 ~~~~~~-~~~~~DvIVANI-----------LA~vl~~La~~~~~~lkpg-g~lIlSGIl~~q~~~V~~a~~~~g 280 (300)
T COG2264 220 LLLEVP-ENGPFDVIVANI-----------LAEVLVELAPDIKRLLKPG-GRLILSGILEDQAESVAEAYEQAG 280 (300)
T ss_pred cchhhc-ccCcccEEEehh-----------hHHHHHHHHHHHHHHcCCC-ceEEEEeehHhHHHHHHHHHHhCC
Confidence 333322 225899999985 2334556666899999999 98765 2233 344666665545
No 61
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.33 E-value=1.6e-11 Score=131.43 Aligned_cols=127 Identities=18% Similarity=0.255 Sum_probs=95.7
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
...+.+...++.++...++.+|||+|||+|++++.+|.. ...++|+|+++.|++.|++|+..+++ .++.++++
T Consensus 280 ~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~-----~~v~~~~~ 352 (443)
T PRK13168 280 QVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGL-----DNVTFYHA 352 (443)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEEe
Confidence 345677777777777778899999999999999999887 46899999999999999999998764 24789999
Q ss_pred ccccc----cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 374 NVRQL----CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 374 Da~~l----~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
|+.+. ++.+++||+|++||||.. .. ..+..+.+ ++|+ +++++++++..+.+.+.
T Consensus 353 d~~~~l~~~~~~~~~fD~Vi~dPPr~g---~~--------~~~~~l~~-~~~~--~ivyvSCnp~tlaRDl~ 410 (443)
T PRK13168 353 NLEEDFTDQPWALGGFDKVLLDPPRAG---AA--------EVMQALAK-LGPK--RIVYVSCNPATLARDAG 410 (443)
T ss_pred ChHHhhhhhhhhcCCCCEEEECcCCcC---hH--------HHHHHHHh-cCCC--eEEEEEeChHHhhccHH
Confidence 98753 233457999999999852 11 12223443 4554 56777888876665554
No 62
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.33 E-value=1.9e-11 Score=130.35 Aligned_cols=126 Identities=17% Similarity=0.130 Sum_probs=97.0
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC-
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF- 380 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~- 380 (494)
.++.+..+.+|.+|||.|||+|+.++.++...+...|+|+|+++.+++.+++|++..|+. ..+.+..+|....+.
T Consensus 229 ~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~----~~v~~~~~d~~~~~~~ 304 (426)
T TIGR00563 229 WVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT----IKAETKDGDGRGPSQW 304 (426)
T ss_pred HHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC----eEEEEecccccccccc
Confidence 444556778899999999999999999887665679999999999999999999988752 234456777765543
Q ss_pred -CCCCeeEEEEcCCCccc-c-C---------Cc---cchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 381 -KPACVDGIVTDLPFGKR-V-G---------SK---SNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 381 -~~~~~D~IVtNPPYG~r-~-~---------~~---~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
..++||.|++|||+... . . .. ..+..+...+|.++.++|||| |++++.|+.
T Consensus 305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg-G~lvystcs 370 (426)
T TIGR00563 305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG-GTLVYATCS 370 (426)
T ss_pred ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEeCC
Confidence 34689999999996321 1 0 01 123455778999999999999 999998884
No 63
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.32 E-value=2.6e-11 Score=126.53 Aligned_cols=124 Identities=15% Similarity=0.162 Sum_probs=100.3
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--cCCCCCeeE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKPACVDG 387 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~~~~~~~D~ 387 (494)
..+..+||+|||+|.+++.+|...|+..++|+|+++.++..|.+++..+++ .++.++++|+..+ .++++++|.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-----~NV~~i~~DA~~ll~~~~~~s~D~ 195 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-----KNLLIINYDARLLLELLPSNSVEK 195 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEECCHHHhhhhCCCCceeE
Confidence 456689999999999999999999999999999999999999999987764 3478999999765 466789999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
|++|.|....-..+ .+-+...|+.++.|+|+|| |.+.+.|.+..++...+.
T Consensus 196 I~lnFPdPW~KkrH--RRlv~~~fL~e~~RvLkpG-G~l~l~TD~~~y~~~~~e 246 (390)
T PRK14121 196 IFVHFPVPWDKKPH--RRVISEDFLNEALRVLKPG-GTLELRTDSELYFEFSLE 246 (390)
T ss_pred EEEeCCCCccccch--hhccHHHHHHHHHHHcCCC-cEEEEEEECHHHHHHHHH
Confidence 99998743211111 2234678999999999999 999999998876655444
No 64
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.32 E-value=5e-11 Score=113.66 Aligned_cols=125 Identities=19% Similarity=0.202 Sum_probs=95.8
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
+....+.+.++..+.+.++.+|||+|||+|.++++++...++..++|+|+++.+++.|++|++.+++ .+++++.+
T Consensus 23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-----~~v~~~~~ 97 (196)
T PRK07402 23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-----KNVEVIEG 97 (196)
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CCeEEEEC
Confidence 4556666677888888889999999999999999998777778999999999999999999997764 24688889
Q ss_pred ccccc-cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHH
Q psy19 374 NVRQL-CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHL 436 (494)
Q Consensus 374 Da~~l-~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l 436 (494)
|+... +.....+|.++.+.. .. +..+++.+.++|+|| |++++.+++...+
T Consensus 98 d~~~~~~~~~~~~d~v~~~~~--------~~----~~~~l~~~~~~Lkpg-G~li~~~~~~~~~ 148 (196)
T PRK07402 98 SAPECLAQLAPAPDRVCIEGG--------RP----IKEILQAVWQYLKPG-GRLVATASSLEGL 148 (196)
T ss_pred chHHHHhhCCCCCCEEEEECC--------cC----HHHHHHHHHHhcCCC-eEEEEEeecHHHH
Confidence 88652 211124566666421 11 356677899999999 9999988876433
No 65
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.31 E-value=3.6e-11 Score=113.30 Aligned_cols=128 Identities=18% Similarity=0.200 Sum_probs=92.7
Q ss_pred chHHHHHHHHHHhCC--CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 295 LKPTIAYNMVRLASP--IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 295 L~e~lAa~ll~la~~--~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
....+-.++.++... -.|.++||+|+|||.+++||+.++. ..++.+|.|.+++...++|++..+. ...+.++.
T Consensus 25 T~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~----~~~~~~~~ 99 (187)
T COG0742 25 TTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGL----EGEARVLR 99 (187)
T ss_pred CchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCC----ccceEEEe
Confidence 333444566776654 5889999999999999999999853 5899999999999999999997764 45568889
Q ss_pred eccccc--cCCC-CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 373 CNVRQL--CFKP-ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 373 ~Da~~l--~~~~-~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
.|+... .... +.||+|..||||...+... . ..-.+-.-..+|+|+ +.+++-+...
T Consensus 100 ~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~--~---~~~~~~~~~~~L~~~-~~iv~E~~~~ 157 (187)
T COG0742 100 NDALRALKQLGTREPFDLVFLDPPYAKGLLDK--E---LALLLLEENGWLKPG-ALIVVEHDKD 157 (187)
T ss_pred ecHHHHHHhcCCCCcccEEEeCCCCccchhhH--H---HHHHHHHhcCCcCCC-cEEEEEeCCC
Confidence 998854 2222 2499999999999543211 1 111111245689998 8877766644
No 66
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.30 E-value=7.8e-11 Score=120.64 Aligned_cols=102 Identities=16% Similarity=0.074 Sum_probs=72.8
Q ss_pred cccchHHHHHHHHHHhC------C--CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhc-cCCC
Q psy19 292 ITTLKPTIAYNMVRLAS------P--IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN-SGNL 362 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~------~--~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~-g~~~ 362 (494)
|.|.|-+....+..+.. . ..+.++||+|||+|.|...++...++..++|+|||+.+++.|+.|+..+ ++
T Consensus 87 piP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l-- 164 (321)
T PRK11727 87 PIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL-- 164 (321)
T ss_pred CCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC--
Confidence 45556555555544421 1 1457899999999988777776666789999999999999999999987 55
Q ss_pred Ccccceeeee-ecccccc----CCCCCeeEEEEcCCCccc
Q psy19 363 NRELKVSPLV-CNVRQLC----FKPACVDGIVTDLPFGKR 397 (494)
Q Consensus 363 ~~~~~i~~~~-~Da~~l~----~~~~~~D~IVtNPPYG~r 397 (494)
..++.+.. .|...+. .+.+.||+|||||||...
T Consensus 165 --~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s 202 (321)
T PRK11727 165 --NGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHAS 202 (321)
T ss_pred --cCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcCc
Confidence 34566643 3433321 134689999999999644
No 67
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.30 E-value=1.8e-11 Score=131.09 Aligned_cols=124 Identities=18% Similarity=0.165 Sum_probs=96.3
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC- 379 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~- 379 (494)
.+..+..+.++..|||+|||+|++++.++... +...|+|+|+++.+++.+++|++.+|+ . .+.++++|+..++
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~----~-~v~~~~~D~~~~~~ 315 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL----T-NIETKALDARKVHE 315 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC----C-eEEEEeCCcccccc
Confidence 34445577788999999999999999888764 457999999999999999999998875 2 3789999998763
Q ss_pred -CCCCCeeEEEEcCCCc-ccc-C---------Ccc---chHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 380 -FKPACVDGIVTDLPFG-KRV-G---------SKS---NNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 380 -~~~~~~D~IVtNPPYG-~r~-~---------~~~---~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+. +.||+|++|||+. ... . ... .+..+...+|..+.++|+|| |++++.|+.
T Consensus 316 ~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG-G~lvystcs 381 (444)
T PRK14902 316 KFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG-GILVYSTCT 381 (444)
T ss_pred hhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEcCC
Confidence 33 6899999999963 110 0 001 23345677899999999999 999987764
No 68
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.30 E-value=3e-11 Score=116.97 Aligned_cols=120 Identities=17% Similarity=0.038 Sum_probs=95.1
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
....|.+.+.|+.++..+++.+|||+|||+|.+++.++...+ ...|+|+|+++.+++.|++|+..+++ .++.++
T Consensus 59 ~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-----~~v~~~ 133 (215)
T TIGR00080 59 TISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-----DNVIVI 133 (215)
T ss_pred EechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCeEEE
Confidence 345677888899988999999999999999999998887743 35799999999999999999998764 346889
Q ss_pred eeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 372 VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 372 ~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
.+|+.........||+|+++++... +...+.+.|+|| |++++....
T Consensus 134 ~~d~~~~~~~~~~fD~Ii~~~~~~~--------------~~~~~~~~L~~g-G~lv~~~~~ 179 (215)
T TIGR00080 134 VGDGTQGWEPLAPYDRIYVTAAGPK--------------IPEALIDQLKEG-GILVMPVGE 179 (215)
T ss_pred ECCcccCCcccCCCCEEEEcCCccc--------------ccHHHHHhcCcC-cEEEEEEcC
Confidence 9998775433468999999876321 112467789999 998886544
No 69
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.29 E-value=5.4e-11 Score=114.55 Aligned_cols=119 Identities=16% Similarity=0.125 Sum_probs=93.2
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
...+.+.+.|+.++.++++++|||+|||+|.++..++... +..+++|+|+++.+++.|++|+..+++ ..++.+..
T Consensus 55 ~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~----~~~v~~~~ 130 (205)
T PRK13944 55 ISAPHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY----WGVVEVYH 130 (205)
T ss_pred echHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEE
Confidence 3456777888888888899999999999999998877654 356899999999999999999997764 34578899
Q ss_pred eccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 373 CNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 373 ~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+|+.+.....++||.|+++-+.. .+..++.+.|+|| |++++...
T Consensus 131 ~d~~~~~~~~~~fD~Ii~~~~~~--------------~~~~~l~~~L~~g-G~lvi~~~ 174 (205)
T PRK13944 131 GDGKRGLEKHAPFDAIIVTAAAS--------------TIPSALVRQLKDG-GVLVIPVE 174 (205)
T ss_pred CCcccCCccCCCccEEEEccCcc--------------hhhHHHHHhcCcC-cEEEEEEc
Confidence 99987543446899999986532 1112577899999 99877543
No 70
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.29 E-value=7.6e-11 Score=125.78 Aligned_cols=128 Identities=17% Similarity=0.190 Sum_probs=94.9
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
...+.+...++.++...++.+|||+|||+|++++.+|.. ...|+|+|+++.|++.|++|+..+++ .++.++++
T Consensus 275 ~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~-----~nv~~~~~ 347 (431)
T TIGR00479 275 GQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGI-----ANVEFLAG 347 (431)
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCC-----CceEEEeC
Confidence 355566666777777778889999999999999999876 46899999999999999999998765 35789999
Q ss_pred ccccc-c---CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 374 NVRQL-C---FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 374 Da~~l-~---~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
|+.+. + ..+.+||+|++|||+. +.. ..+++.+.+ ++|+ + ++++++++..+.+.+.
T Consensus 348 d~~~~l~~~~~~~~~~D~vi~dPPr~---G~~-------~~~l~~l~~-l~~~-~-ivyvsc~p~tlard~~ 406 (431)
T TIGR00479 348 TLETVLPKQPWAGQIPDVLLLDPPRK---GCA-------AEVLRTIIE-LKPE-R-IVYVSCNPATLARDLE 406 (431)
T ss_pred CHHHHHHHHHhcCCCCCEEEECcCCC---CCC-------HHHHHHHHh-cCCC-E-EEEEcCCHHHHHHHHH
Confidence 98763 1 2235799999999953 321 233334443 6665 4 6677788766655544
No 71
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.28 E-value=2.6e-11 Score=129.61 Aligned_cols=125 Identities=20% Similarity=0.203 Sum_probs=96.2
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC- 379 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~- 379 (494)
.++.+..+.+|.+|||.|||+|+..+.++... +...|+|+|+++.+++.+++|++.+|+ ..+.++++|+..++
T Consensus 243 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-----~~v~~~~~D~~~~~~ 317 (434)
T PRK14901 243 LVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-----KSIKILAADSRNLLE 317 (434)
T ss_pred HHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-----CeEEEEeCChhhccc
Confidence 34445677889999999999999998877653 346899999999999999999998875 23788999998875
Q ss_pred ---CCCCCeeEEEEcCCC-cccc-CCc---------c---chHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 380 ---FKPACVDGIVTDLPF-GKRV-GSK---------S---NNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 380 ---~~~~~~D~IVtNPPY-G~r~-~~~---------~---~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
...++||.|++|||. |... ... . .+..+...+|..+.++|||| |++++.|+.
T Consensus 318 ~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpg-G~lvystcs 386 (434)
T PRK14901 318 LKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPG-GTLVYATCT 386 (434)
T ss_pred ccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEeCC
Confidence 334689999999995 2111 000 1 12334568899999999999 999988763
No 72
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.28 E-value=1.4e-11 Score=101.57 Aligned_cols=95 Identities=20% Similarity=0.246 Sum_probs=75.0
Q ss_pred EEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcCCCc
Q psy19 316 LDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFG 395 (494)
Q Consensus 316 LDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG 395 (494)
||+|||+|..+..++.. ++..++|+|+++.+++.++++....+ +.+.++|+.++|+++++||+|+++==+.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~--------~~~~~~d~~~l~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEG--------VSFRQGDAEDLPFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTST--------EEEEESBTTSSSS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccC--------chheeehHHhCcccccccccccccccee
Confidence 79999999999988887 67899999999999999999887443 3489999999999999999999963222
Q ss_pred cccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 396 KRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 396 ~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
.- +-...+++++.|+|||| |++++
T Consensus 72 ~~--------~~~~~~l~e~~rvLk~g-G~l~~ 95 (95)
T PF08241_consen 72 HL--------EDPEAALREIYRVLKPG-GRLVI 95 (95)
T ss_dssp GS--------SHHHHHHHHHHHHEEEE-EEEEE
T ss_pred ec--------cCHHHHHHHHHHHcCcC-eEEeC
Confidence 11 22557888999999999 98875
No 73
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.27 E-value=3.8e-11 Score=118.64 Aligned_cols=120 Identities=18% Similarity=0.149 Sum_probs=95.1
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
.+.+...+|..|+.+....++.+|||+|||+|.++..++.. +..++|+|+++.+++.|+.+... ..++
T Consensus 23 ~~~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~----------~~~~ 90 (251)
T PRK10258 23 HAELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAA----------DHYL 90 (251)
T ss_pred HHHHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCC----------CCEE
Confidence 34567778888888776666789999999999988877765 67999999999999999987531 2578
Q ss_pred eeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 372 VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 372 ~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
++|+..+++++++||+|++|.++.. . .+ ...++.++.++|+|| |.+++.+..
T Consensus 91 ~~d~~~~~~~~~~fD~V~s~~~l~~-~---~d----~~~~l~~~~~~Lk~g-G~l~~~~~~ 142 (251)
T PRK10258 91 AGDIESLPLATATFDLAWSNLAVQW-C---GN----LSTALRELYRVVRPG-GVVAFTTLV 142 (251)
T ss_pred EcCcccCcCCCCcEEEEEECchhhh-c---CC----HHHHHHHHHHHcCCC-eEEEEEeCC
Confidence 8999988887789999999987542 1 12 346677899999999 999887653
No 74
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.27 E-value=7.6e-11 Score=119.47 Aligned_cols=127 Identities=20% Similarity=0.231 Sum_probs=87.0
Q ss_pred chHHHHHHHHHHhC-CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~-~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
..||..-+|-.+.. ..+|.+|||.|||||-++|.|++.+. ..|+|+|+||.+++.|++|+..|++. .++.+.
T Consensus 144 ~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~----~~~~v~-- 216 (295)
T PF06325_consen 144 HHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVE----DRIEVS-- 216 (295)
T ss_dssp HCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-T----TCEEES--
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCC----eeEEEE--
Confidence 34444444443333 35788999999999999999999843 47999999999999999999999873 333332
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE---EecCHHHHHHHHHh
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL---LTSDRKHLIQALHI 442 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl---lt~~~~~l~~~l~~ 442 (494)
... ....+.||+|++|.= ......++..+.++|+|| |.+++ +......+.+++..
T Consensus 217 ~~~--~~~~~~~dlvvANI~-----------~~vL~~l~~~~~~~l~~~-G~lIlSGIl~~~~~~v~~a~~~ 274 (295)
T PF06325_consen 217 LSE--DLVEGKFDLVVANIL-----------ADVLLELAPDIASLLKPG-GYLILSGILEEQEDEVIEAYKQ 274 (295)
T ss_dssp CTS--CTCCS-EEEEEEES------------HHHHHHHHHHCHHHEEEE-EEEEEEEEEGGGHHHHHHHHHT
T ss_pred Eec--ccccccCCEEEECCC-----------HHHHHHHHHHHHHhhCCC-CEEEEccccHHHHHHHHHHHHC
Confidence 111 122378999999852 233445666899999998 98776 33345556777754
No 75
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=4.6e-11 Score=126.99 Aligned_cols=131 Identities=20% Similarity=0.223 Sum_probs=100.7
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
.....+.|....+..+...++++|+|++||.|+|++.+|.. ...|+|+|+++.+++.|++|++.||+ .++.+.
T Consensus 274 N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i-----~N~~f~ 346 (432)
T COG2265 274 NPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGI-----DNVEFI 346 (432)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCC-----CcEEEE
Confidence 34456666666666667778899999999999999999966 57999999999999999999999976 237899
Q ss_pred eeccccccCC---CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHh
Q psy19 372 VCNVRQLCFK---PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHI 442 (494)
Q Consensus 372 ~~Da~~l~~~---~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~ 442 (494)
.+|+.++... ...+|.||.||| |.|... .+++.+.+.- | -+++.+++++..+.+.+..
T Consensus 347 ~~~ae~~~~~~~~~~~~d~VvvDPP---R~G~~~-------~~lk~l~~~~-p--~~IvYVSCNP~TlaRDl~~ 407 (432)
T COG2265 347 AGDAEEFTPAWWEGYKPDVVVVDPP---RAGADR-------EVLKQLAKLK-P--KRIVYVSCNPATLARDLAI 407 (432)
T ss_pred eCCHHHHhhhccccCCCCEEEECCC---CCCCCH-------HHHHHHHhcC-C--CcEEEEeCCHHHHHHHHHH
Confidence 9999887432 247899999999 776642 3344454443 2 3588899999877766653
No 76
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.26 E-value=3.7e-11 Score=119.19 Aligned_cols=115 Identities=14% Similarity=0.161 Sum_probs=91.2
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
.+...+..++......++.+|||+|||+|.++..++..+|+..++|+|+++.|++.|+++ + +.+.++|
T Consensus 13 ~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~--------~~~~~~d 80 (255)
T PRK14103 13 HRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----G--------VDARTGD 80 (255)
T ss_pred HhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----C--------CcEEEcC
Confidence 444455667777777788999999999999999999888888999999999999999763 1 3678899
Q ss_pred cccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 375 VRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+.+++ ++++||+|+++..+.. +. + ...+++++.++|+|| |++++..+
T Consensus 81 ~~~~~-~~~~fD~v~~~~~l~~-~~---d----~~~~l~~~~~~Lkpg-G~l~~~~~ 127 (255)
T PRK14103 81 VRDWK-PKPDTDVVVSNAALQW-VP---E----HADLLVRWVDELAPG-SWIAVQVP 127 (255)
T ss_pred hhhCC-CCCCceEEEEehhhhh-CC---C----HHHHHHHHHHhCCCC-cEEEEEcC
Confidence 98774 3478999999987652 22 2 245667899999999 99888654
No 77
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.26 E-value=4.6e-11 Score=118.41 Aligned_cols=117 Identities=10% Similarity=0.110 Sum_probs=94.0
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
.+...+..++......++.+|||+|||+|.++..++...++..++|+|+++.+++.|+++.. .+.+..+|
T Consensus 15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~----------~~~~~~~d 84 (258)
T PRK01683 15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP----------DCQFVEAD 84 (258)
T ss_pred HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC----------CCeEEECc
Confidence 44556777777777788899999999999999999988888899999999999999998753 24678889
Q ss_pred cccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 375 VRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+..+.. ..+||+|++|..+.. +. + ...+++++.++|+|| |.+++.++
T Consensus 85 ~~~~~~-~~~fD~v~~~~~l~~-~~---d----~~~~l~~~~~~Lkpg-G~~~~~~~ 131 (258)
T PRK01683 85 IASWQP-PQALDLIFANASLQW-LP---D----HLELFPRLVSLLAPG-GVLAVQMP 131 (258)
T ss_pred hhccCC-CCCccEEEEccChhh-CC---C----HHHHHHHHHHhcCCC-cEEEEECC
Confidence 877643 358999999987642 22 2 346777899999999 99888664
No 78
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.26 E-value=5.8e-11 Score=113.43 Aligned_cols=109 Identities=14% Similarity=0.087 Sum_probs=83.7
Q ss_pred HHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCC
Q psy19 305 RLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPAC 384 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~ 384 (494)
......++.+|||+|||+|.+++.+|.. +..|+|+|+++.|++.+++++...++ .+.+...|+...+++ ++
T Consensus 24 ~~~~~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~------~v~~~~~d~~~~~~~-~~ 94 (195)
T TIGR00477 24 EAVKTVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENL------PLRTDAYDINAAALN-ED 94 (195)
T ss_pred HHhccCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCC------CceeEeccchhcccc-CC
Confidence 3334445679999999999999999986 67999999999999999999886654 145677787665554 57
Q ss_pred eeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 385 VDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 385 ~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
||+|+++.+|.. +.. .....+++++.++|+|| |.++++
T Consensus 95 fD~I~~~~~~~~-~~~-----~~~~~~l~~~~~~Lkpg-G~lli~ 132 (195)
T TIGR00477 95 YDFIFSTVVFMF-LQA-----GRVPEIIANMQAHTRPG-GYNLIV 132 (195)
T ss_pred CCEEEEeccccc-CCH-----HHHHHHHHHHHHHhCCC-cEEEEE
Confidence 999999988752 211 12446677899999999 986665
No 79
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.25 E-value=9.8e-11 Score=121.86 Aligned_cols=128 Identities=19% Similarity=0.225 Sum_probs=85.2
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
.....+.|...++.+++..++ .|||++||+|||++.+|.. ...|+|+|+++.|++.|++|++.+++ .++.++
T Consensus 178 N~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~i-----~n~~f~ 249 (352)
T PF05958_consen 178 NPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNGI-----DNVEFI 249 (352)
T ss_dssp BHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT-------SEEEE
T ss_pred cHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcCC-----CcceEE
Confidence 445667777777777777666 7999999999999999987 56899999999999999999999875 346777
Q ss_pred eecccccc----------------CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHH
Q psy19 372 VCNVRQLC----------------FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKH 435 (494)
Q Consensus 372 ~~Da~~l~----------------~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~ 435 (494)
.+++.++. .....+|+||.||| |.|.... ++..+. ++ .+++.+++++..
T Consensus 250 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPP---R~G~~~~-------~~~~~~---~~--~~ivYvSCnP~t 314 (352)
T PF05958_consen 250 RGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPP---RAGLDEK-------VIELIK---KL--KRIVYVSCNPAT 314 (352)
T ss_dssp E--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE------TT-SCHH-------HHHHHH---HS--SEEEEEES-HHH
T ss_pred EeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCC---CCCchHH-------HHHHHh---cC--CeEEEEECCHHH
Confidence 77654431 11236899999999 7765432 122222 22 579999999987
Q ss_pred HHHHHHh
Q psy19 436 LIQALHI 442 (494)
Q Consensus 436 l~~~l~~ 442 (494)
+.+.+..
T Consensus 315 laRDl~~ 321 (352)
T PF05958_consen 315 LARDLKI 321 (352)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766653
No 80
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.25 E-value=5.2e-11 Score=111.01 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=75.9
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC 379 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~ 379 (494)
+..|+..+.+.++..|||+|||+|.+..+++.. +.+++|+|+|+.+++.+++|+.. ..+++++++|+.+++
T Consensus 2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~-------~~~v~ii~~D~~~~~ 72 (169)
T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA-------ADNLTVIHGDALKFD 72 (169)
T ss_pred HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc-------CCCEEEEECchhcCC
Confidence 456777788888899999999999999999887 57899999999999999999863 135689999999987
Q ss_pred CCCCCeeEEEEcCCCcc
Q psy19 380 FKPACVDGIVTDLPFGK 396 (494)
Q Consensus 380 ~~~~~~D~IVtNPPYG~ 396 (494)
+++..+|.|++||||..
T Consensus 73 ~~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 73 LPKLQPYKVVGNLPYNI 89 (169)
T ss_pred ccccCCCEEEECCCccc
Confidence 76557999999999974
No 81
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=99.24 E-value=5.1e-11 Score=113.34 Aligned_cols=162 Identities=14% Similarity=0.186 Sum_probs=90.0
Q ss_pred cchHHHHHHHHHHh-CC---CCCCEEEEEcCCcChHHHHHHhcCCC--CeEEEEeCCHHHHHHHHHHHHhccC---C---
Q psy19 294 TLKPTIAYNMVRLA-SP---IPGDVFLDPMCGGGTIPVECSLSYPH--TFFVCGDINEKLVLKTQANVLHNSG---N--- 361 (494)
Q Consensus 294 ~L~e~lAa~ll~la-~~---~~g~~VLDP~CGSGtilIEAA~~~~~--~~v~G~Did~~al~~Ar~Nl~~~g~---~--- 361 (494)
+.+-.||..+.+.+ .. ...-+++|||||+|.++.-..+.... ..|+|+|||+.+++.|++|+..... +
T Consensus 30 ~FPVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~ 109 (246)
T PF11599_consen 30 AFPVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARR 109 (246)
T ss_dssp ---HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHH
Confidence 34556666666655 22 34568999999999999887776433 4799999999999999999975321 0
Q ss_pred -------------------------------CCcccceeeeeecccccc-----CCCCCeeEEEEcCCCccccCCcc-ch
Q psy19 362 -------------------------------LNRELKVSPLVCNVRQLC-----FKPACVDGIVTDLPFGKRVGSKS-NN 404 (494)
Q Consensus 362 -------------------------------~~~~~~i~~~~~Da~~l~-----~~~~~~D~IVtNPPYG~r~~~~~-~~ 404 (494)
.+-.....+.+.|+++.. ......|+||||.|||.+..... ..
T Consensus 110 ~eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~ 189 (246)
T PF11599_consen 110 EELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGS 189 (246)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCC
Confidence 000112446677777631 11235799999999999876554 23
Q ss_pred HHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHhccccceeeeeEEEccCCceEEEE
Q psy19 405 FLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVF 465 (494)
Q Consensus 405 ~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~~~~l~~~~~~~~v~~Ggl~~~i~ 465 (494)
..-..++|..++.+| |. .-++.++....-+.. +. ++..+ .+.+|.-...+|
T Consensus 190 ~~p~~~ml~~l~~vL-p~-~sVV~v~~k~~Ki~~-----~~-~r~~~--rlKvGkR~~~l~ 240 (246)
T PF11599_consen 190 GGPVAQMLNSLAPVL-PE-RSVVAVSDKGRKIPH-----DR-FRRLE--RLKVGKRQAALF 240 (246)
T ss_dssp HHHHHHHHHHHHCCS--T-T-EEEEEESSSS--------TT-S--SE--EEEETTEEEEEE
T ss_pred CCcHHHHHHHHHhhC-CC-CcEEEEecCCccccc-----ch-hHHHH--HHhccceEEEEE
Confidence 445678999999999 65 544445443221221 11 23333 455666665555
No 82
>PRK06922 hypothetical protein; Provisional
Probab=99.24 E-value=6.7e-11 Score=129.62 Aligned_cols=119 Identities=19% Similarity=0.195 Sum_probs=92.5
Q ss_pred HHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--CCC
Q psy19 305 RLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--FKP 382 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~~~ 382 (494)
.+..+.++.+|||+|||+|.++..++...|+..++|+|+++.|++.|++++...+ ..+.++++|+.+++ +++
T Consensus 412 ~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g------~~ie~I~gDa~dLp~~fed 485 (677)
T PRK06922 412 IILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG------RSWNVIKGDAINLSSSFEK 485 (677)
T ss_pred HHhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC------CCeEEEEcchHhCccccCC
Confidence 3456667899999999999999888887888999999999999999999876443 23578889998876 667
Q ss_pred CCeeEEEEcCCCccccC-----CccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 383 ACVDGIVTDLPFGKRVG-----SKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~~-----~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
++||+|++++++..-.. .......-...+++++.++|||| |++++.-
T Consensus 486 eSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPG-GrLII~D 537 (677)
T PRK06922 486 ESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPG-GRIIIRD 537 (677)
T ss_pred CCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCC-cEEEEEe
Confidence 89999999987642211 00011234567888999999999 9998863
No 83
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.24 E-value=7.5e-11 Score=112.85 Aligned_cols=107 Identities=13% Similarity=0.118 Sum_probs=83.8
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeE
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG 387 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~ 387 (494)
...++.+|||+|||+|.+++.+|.. +..|+|+|+++.|++.|++++...++ ..+++...|+..+++. +.||+
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~-~~fD~ 98 (197)
T PRK11207 27 KVVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENL-----DNLHTAVVDLNNLTFD-GEYDF 98 (197)
T ss_pred ccCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCC-----CcceEEecChhhCCcC-CCcCE
Confidence 4446689999999999999999886 67999999999999999999987654 2357788898877664 57999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
|+++..+.. +. ......++..+.++|+|| |.++++
T Consensus 99 I~~~~~~~~-~~-----~~~~~~~l~~i~~~Lkpg-G~~~~~ 133 (197)
T PRK11207 99 ILSTVVLMF-LE-----AKTIPGLIANMQRCTKPG-GYNLIV 133 (197)
T ss_pred EEEecchhh-CC-----HHHHHHHHHHHHHHcCCC-cEEEEE
Confidence 999865421 11 122456777999999999 986554
No 84
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.24 E-value=7e-11 Score=126.65 Aligned_cols=123 Identities=17% Similarity=0.157 Sum_probs=94.9
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~ 381 (494)
.+.+..+.+|..|||+|||+|..++.++.. ..+..|+|+|+++.+++.+++|++..|+ ..+.+.++|+..++ +
T Consensus 242 ~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-----~~v~~~~~Da~~~~-~ 315 (445)
T PRK14904 242 ACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-----TIIETIEGDARSFS-P 315 (445)
T ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-----CeEEEEeCcccccc-c
Confidence 334556778899999999999988776653 2346899999999999999999998765 24788999998875 3
Q ss_pred CCCeeEEEEcCCCcc-cc-C---------Ccc---chHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 382 PACVDGIVTDLPFGK-RV-G---------SKS---NNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 382 ~~~~D~IVtNPPYG~-r~-~---------~~~---~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+++||.|++|||+.. .. . ... .+..+...+|..+.++|+|| |++++.|+.
T Consensus 316 ~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg-G~lvystcs 379 (445)
T PRK14904 316 EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG-GVLVYATCS 379 (445)
T ss_pred CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEeCC
Confidence 468999999999721 11 0 011 12345678999999999999 999998874
No 85
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.21 E-value=6.3e-10 Score=110.38 Aligned_cols=111 Identities=22% Similarity=0.286 Sum_probs=80.9
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
..++.+|||+|||+|.+++.++...+ ..++|+|+|+.+++.|++|+..+++ ...+.+..+| .+||+|
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~----~~~~~~~~~~--------~~fD~V 183 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGV----ELNVYLPQGD--------LKADVI 183 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCC----CceEEEccCC--------CCcCEE
Confidence 35788999999999999998777643 3699999999999999999998764 1222222222 279999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec---CHHHHHHHHHhcc
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS---DRKHLIQALHITS 444 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~---~~~~l~~~l~~~~ 444 (494)
++|.. ...+..+++++.++|+|| |.+++... +...+...+...|
T Consensus 184 vani~-----------~~~~~~l~~~~~~~Lkpg-G~lilsgi~~~~~~~v~~~l~~~G 230 (250)
T PRK00517 184 VANIL-----------ANPLLELAPDLARLLKPG-GRLILSGILEEQADEVLEAYEEAG 230 (250)
T ss_pred EEcCc-----------HHHHHHHHHHHHHhcCCC-cEEEEEECcHhhHHHHHHHHHHCC
Confidence 99853 123556778899999999 99887533 2334555666555
No 86
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.21 E-value=5.8e-11 Score=119.38 Aligned_cols=111 Identities=22% Similarity=0.286 Sum_probs=81.6
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~ 381 (494)
.++..++.++|.+|||+|||-|++++.+|..+ +++|+|+.+++..++.|++.+...|+ .+.+.+...|..+++
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl----~~~v~v~~~D~~~~~-- 125 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGL----EDRVEVRLQDYRDLP-- 125 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTS----SSTEEEEES-GGG----
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEeeccccC--
Confidence 34555678999999999999999999999987 78999999999999999999997765 567889999999875
Q ss_pred CCCeeEEEEcCCCccccCCccch-HHHHHHHHHHHhhcccCCCcEEEE
Q psy19 382 PACVDGIVTDLPFGKRVGSKSNN-FLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 382 ~~~~D~IVtNPPYG~r~~~~~~~-~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
.+||.||+ ++.-+.+ ..-|..|++.+.++|+|| |++++
T Consensus 126 -~~fD~IvS-------i~~~Ehvg~~~~~~~f~~~~~~Lkpg-G~~~l 164 (273)
T PF02353_consen 126 -GKFDRIVS-------IEMFEHVGRKNYPAFFRKISRLLKPG-GRLVL 164 (273)
T ss_dssp --S-SEEEE-------ESEGGGTCGGGHHHHHHHHHHHSETT-EEEEE
T ss_pred -CCCCEEEE-------EechhhcChhHHHHHHHHHHHhcCCC-cEEEE
Confidence 38999998 2222111 123778888999999999 99885
No 87
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.21 E-value=1.7e-10 Score=115.34 Aligned_cols=110 Identities=21% Similarity=0.237 Sum_probs=87.4
Q ss_pred HhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCC
Q psy19 306 LASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPAC 384 (494)
Q Consensus 306 la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~ 384 (494)
++...++.+|||+|||+|..++.++.. .+..+++|+|+++.+++.|++|....++ .++.+..+|+..+++++++
T Consensus 72 ~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-----~~v~~~~~d~~~l~~~~~~ 146 (272)
T PRK11873 72 LAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-----TNVEFRLGEIEALPVADNS 146 (272)
T ss_pred hccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-----CCEEEEEcchhhCCCCCCc
Confidence 345678999999999999987776654 4456899999999999999999987664 2567899999988877779
Q ss_pred eeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 385 VDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 385 ~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
||+|++|.-+.. . .+ ...+++++.++|||| |++++.
T Consensus 147 fD~Vi~~~v~~~-~---~d----~~~~l~~~~r~LkpG-G~l~i~ 182 (272)
T PRK11873 147 VDVIISNCVINL-S---PD----KERVFKEAFRVLKPG-GRFAIS 182 (272)
T ss_pred eeEEEEcCcccC-C---CC----HHHHHHHHHHHcCCC-cEEEEE
Confidence 999999865432 1 12 235667899999999 998874
No 88
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.21 E-value=2.1e-10 Score=111.04 Aligned_cols=121 Identities=13% Similarity=-0.020 Sum_probs=95.0
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
.+...|.+.+.|+.++.+.++.+|||+|||||.+...++... +...++|+|+++.+++.|++|+...++ .++.+
T Consensus 57 ~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-----~~v~~ 131 (212)
T PRK13942 57 QTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-----DNVEV 131 (212)
T ss_pred CEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCeEE
Confidence 345778899999999999999999999999999988777653 346999999999999999999997764 35789
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
.++|+.......+.||+|+++-- . .. +...+.+.|+|| |++++....
T Consensus 132 ~~gd~~~~~~~~~~fD~I~~~~~----~---~~-------~~~~l~~~Lkpg-G~lvi~~~~ 178 (212)
T PRK13942 132 IVGDGTLGYEENAPYDRIYVTAA----G---PD-------IPKPLIEQLKDG-GIMVIPVGS 178 (212)
T ss_pred EECCcccCCCcCCCcCEEEECCC----c---cc-------chHHHHHhhCCC-cEEEEEEcC
Confidence 99998876444578999998521 1 11 112466789999 998886543
No 89
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.21 E-value=1.5e-11 Score=118.18 Aligned_cols=128 Identities=20% Similarity=0.267 Sum_probs=102.9
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
..|+..+++ -+.+.+++.|.+|||.|.|-|.++|+|+.+ ++ .|+.++.||..++.|..|--..++. ...+.+
T Consensus 117 tdP~~Dt~~--Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~---~~~i~i 189 (287)
T COG2521 117 TDPLEDTLA--KVELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELF---EIAIKI 189 (287)
T ss_pred cCcHHHHHh--hhheeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCcccc---ccccEE
Confidence 456666555 356778888999999999999999999988 66 8999999999999999998766542 235789
Q ss_pred eeeccccc--cCCCCCeeEEEEcCCCccccCCccchHHHHH-HHHHHHhhcccCCCcEEEEEecCH
Q psy19 371 LVCNVRQL--CFKPACVDGIVTDLPFGKRVGSKSNNFLLYR-LFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 371 ~~~Da~~l--~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~-~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
+.+|+.++ .+++.+||+||-||| |++.. .+||. .|.+++.|+|+|| |+++-.++++
T Consensus 190 ilGD~~e~V~~~~D~sfDaIiHDPP---RfS~A---geLYseefY~El~RiLkrg-GrlFHYvG~P 248 (287)
T COG2521 190 ILGDAYEVVKDFDDESFDAIIHDPP---RFSLA---GELYSEEFYRELYRILKRG-GRLFHYVGNP 248 (287)
T ss_pred ecccHHHHHhcCCccccceEeeCCC---ccchh---hhHhHHHHHHHHHHHcCcC-CcEEEEeCCC
Confidence 99999887 578889999999999 33322 13454 3666899999999 9999988754
No 90
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.20 E-value=1.2e-10 Score=111.67 Aligned_cols=100 Identities=20% Similarity=0.222 Sum_probs=73.3
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
..+|++|+|+|||.|.|++.+|...+...|+++|++|.+++..++|++.|++ ...+.++++|++++.. ...+|.|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv----~~~i~~~~~D~~~~~~-~~~~drv 173 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV----ENRIEVINGDAREFLP-EGKFDRV 173 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-----TTTEEEEES-GGG----TT-EEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC----CCeEEEEcCCHHHhcC-ccccCEE
Confidence 4689999999999999999999865678999999999999999999999976 4567899999999854 5789999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEE
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA 426 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~l 426 (494)
|+|+|.... .||..+.+++++| |.+
T Consensus 174 im~lp~~~~------------~fl~~~~~~~~~~-g~i 198 (200)
T PF02475_consen 174 IMNLPESSL------------EFLDAALSLLKEG-GII 198 (200)
T ss_dssp EE--TSSGG------------GGHHHHHHHEEEE-EEE
T ss_pred EECChHHHH------------HHHHHHHHHhcCC-cEE
Confidence 999995421 4556677888887 654
No 91
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.20 E-value=5.5e-10 Score=113.14 Aligned_cols=102 Identities=19% Similarity=0.187 Sum_probs=78.8
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.++.+|||+|||||.+++.++... ...++|+|+|+.+++.|++|+..+++ ...+.+...|... ...++||+|+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~----~~~~~~~~~~~~~--~~~~~fDlVv 230 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQV----SDRLQVKLIYLEQ--PIEGKADVIV 230 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCC----CcceEEEeccccc--ccCCCceEEE
Confidence 467899999999999999888763 35899999999999999999998765 2334555555322 2346899999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+|+. ...+..++.++.++|+|| |.+++..
T Consensus 231 an~~-----------~~~l~~ll~~~~~~Lkpg-G~li~sg 259 (288)
T TIGR00406 231 ANIL-----------AEVIKELYPQFSRLVKPG-GWLILSG 259 (288)
T ss_pred EecC-----------HHHHHHHHHHHHHHcCCC-cEEEEEe
Confidence 9963 123456777899999999 9887743
No 92
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.19 E-value=1.5e-10 Score=114.61 Aligned_cols=108 Identities=14% Similarity=0.179 Sum_probs=85.2
Q ss_pred CCCCCEEEEEcCCcChHHHHHHh--cCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCee
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSL--SYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVD 386 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~--~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D 386 (494)
..++.+|||+|||+|.+++.++. ..|+..++|+|+++.|++.|++|+..++. ..+++++++|+.+++++ .+|
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~----~~~v~~~~~d~~~~~~~--~~D 127 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA----PTPVDVIEGDIRDIAIE--NAS 127 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEeCChhhCCCC--CCC
Confidence 34778999999999999888776 35788999999999999999999987653 34678999999988764 589
Q ss_pred EEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 387 GIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+|+++..+.. +. .. -...+++++.++|+|| |.+++.
T Consensus 128 ~vv~~~~l~~-l~-~~----~~~~~l~~i~~~LkpG-G~l~l~ 163 (247)
T PRK15451 128 MVVLNFTLQF-LE-PS----ERQALLDKIYQGLNPG-GALVLS 163 (247)
T ss_pred EEehhhHHHh-CC-HH----HHHHHHHHHHHhcCCC-CEEEEE
Confidence 9999865431 11 11 1346777899999999 998875
No 93
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.19 E-value=1.1e-10 Score=115.79 Aligned_cols=109 Identities=14% Similarity=0.161 Sum_probs=86.5
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-CCCCCeeEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-FKPACVDGI 388 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~~~~~~D~I 388 (494)
.++.+|||+|||+|.+++.++.. +..++|+|+++.+++.|++++...|+ ..++.++++|+.+++ +.+++||+|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~----~~~v~~~~~d~~~l~~~~~~~fD~V 116 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGV----SDNMQFIHCAAQDIAQHLETPVDLI 116 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCC----ccceEEEEcCHHHHhhhcCCCCCEE
Confidence 45679999999999999999887 67999999999999999999987654 345789999998873 445789999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
+++..+.. +. +. ..++.++.++|+|| |.++++..+.
T Consensus 117 ~~~~vl~~-~~---~~----~~~l~~~~~~Lkpg-G~l~i~~~n~ 152 (255)
T PRK11036 117 LFHAVLEW-VA---DP----KSVLQTLWSVLRPG-GALSLMFYNA 152 (255)
T ss_pred EehhHHHh-hC---CH----HHHHHHHHHHcCCC-eEEEEEEECc
Confidence 99765331 11 11 35677899999999 9998775543
No 94
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.19 E-value=1.3e-09 Score=112.71 Aligned_cols=119 Identities=12% Similarity=0.027 Sum_probs=90.8
Q ss_pred chHHHHHHHHHHhCC-CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASP-IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~-~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
..+.+...++..+.+ .++.+|||+|||+|.+.+.++...++..++|+|+++.+++.|+++.... .+.++.+
T Consensus 96 ~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~--------~i~~i~g 167 (340)
T PLN02490 96 WTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--------ECKIIEG 167 (340)
T ss_pred chHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc--------CCeEEec
Confidence 344454445554544 4678999999999999888887766679999999999999999986522 3468999
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
|+.++++++++||+|+++..+.. .. + ...+++++.++|+|| |+++++.
T Consensus 168 D~e~lp~~~~sFDvVIs~~~L~~-~~---d----~~~~L~e~~rvLkPG-G~LvIi~ 215 (340)
T PLN02490 168 DAEDLPFPTDYADRYVSAGSIEY-WP---D----PQRGIKEAYRVLKIG-GKACLIG 215 (340)
T ss_pred cHHhCCCCCCceeEEEEcChhhh-CC---C----HHHHHHHHHHhcCCC-cEEEEEE
Confidence 99998887789999999865432 11 1 135677899999999 9987753
No 95
>PRK04266 fibrillarin; Provisional
Probab=99.19 E-value=7.6e-10 Score=108.35 Aligned_cols=116 Identities=12% Similarity=0.068 Sum_probs=88.6
Q ss_pred chHHHHHHHHH---HhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 295 LKPTIAYNMVR---LASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 295 L~e~lAa~ll~---la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
.+..+++.++. .+.+++|.+|||.|||+|.+++.++...+...|+|+|+++.|++.+.++++.. .++.++
T Consensus 53 ~r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-------~nv~~i 125 (226)
T PRK04266 53 RRSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-------KNIIPI 125 (226)
T ss_pred CccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-------CCcEEE
Confidence 45667777665 57788999999999999999999988765568999999999999888887632 235678
Q ss_pred eeccccc----cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 372 VCNVRQL----CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 372 ~~Da~~l----~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
.+|+... ++. .+||+|++|.+. . .....+++++.++|||| |++++.
T Consensus 126 ~~D~~~~~~~~~l~-~~~D~i~~d~~~------p----~~~~~~L~~~~r~LKpG-G~lvI~ 175 (226)
T PRK04266 126 LADARKPERYAHVV-EKVDVIYQDVAQ------P----NQAEIAIDNAEFFLKDG-GYLLLA 175 (226)
T ss_pred ECCCCCcchhhhcc-ccCCEEEECCCC------h----hHHHHHHHHHHHhcCCC-cEEEEE
Confidence 8888652 222 469999997652 1 11345677899999999 999883
No 96
>KOG3191|consensus
Probab=99.19 E-value=1.2e-09 Score=101.52 Aligned_cols=148 Identities=16% Similarity=0.268 Sum_probs=106.1
Q ss_pred CCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 312 GDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
...++++|||||.+..-.++. .|++...+.||||.|++.+++.++.+++ .++.++.|+..- +..+++|+++.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~------~~~~V~tdl~~~-l~~~~VDvLvf 116 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV------HIDVVRTDLLSG-LRNESVDVLVF 116 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC------ccceeehhHHhh-hccCCccEEEE
Confidence 578999999999887666654 4567788999999999999999998865 257888887764 33389999999
Q ss_pred cCCCcccc-------------CCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH---HHHHHHHHhccccceeeeeEE
Q psy19 391 DLPFGKRV-------------GSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR---KHLIQALHITSALWKCRKQIK 454 (494)
Q Consensus 391 NPPYG~r~-------------~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~---~~l~~~l~~~~~l~~~~~~~~ 454 (494)
||||--.. ....+.++...+++..+-.+|.|. |.+++++... ..+.+.+...+ |.......
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~-Gv~Ylv~~~~N~p~ei~k~l~~~g--~~~~~~~~ 193 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPR-GVFYLVALRANKPKEILKILEKKG--YGVRIAMQ 193 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcC-ceEEeeehhhcCHHHHHHHHhhcc--cceeEEEE
Confidence 99994321 112345677788999999999999 9888876643 33444444433 44444444
Q ss_pred EccCCceEEEEEEee
Q psy19 455 INMSGMKSFVFILNR 469 (494)
Q Consensus 455 v~~Ggl~~~i~v~~~ 469 (494)
-..|+-...|+.+.+
T Consensus 194 Rk~~~E~l~ilkf~r 208 (209)
T KOG3191|consen 194 RKAGGETLSILKFTR 208 (209)
T ss_pred EecCCceEEEEEEEe
Confidence 455666666666554
No 97
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.18 E-value=2.4e-10 Score=114.33 Aligned_cols=123 Identities=14% Similarity=0.061 Sum_probs=92.5
Q ss_pred ccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 291 NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 291 ~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
+|..+.+ +..++......++.+|||+|||+|.++..++..+ ++.++|+|+++.+++.|+.++.. ..++.+
T Consensus 34 ~~gg~~~--~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-------~~~i~~ 103 (263)
T PTZ00098 34 SSGGIEA--TTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-------KNKIEF 103 (263)
T ss_pred CCCchHH--HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-------CCceEE
Confidence 3444444 3446666778899999999999999988877654 57999999999999999998752 235688
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
..+|+...++++++||+|++..-+.. +. ..+ ...+++++.++|||| |++++..
T Consensus 104 ~~~D~~~~~~~~~~FD~V~s~~~l~h-~~-~~d----~~~~l~~i~r~LkPG-G~lvi~d 156 (263)
T PTZ00098 104 EANDILKKDFPENTFDMIYSRDAILH-LS-YAD----KKKLFEKCYKWLKPN-GILLITD 156 (263)
T ss_pred EECCcccCCCCCCCeEEEEEhhhHHh-CC-HHH----HHHHHHHHHHHcCCC-cEEEEEE
Confidence 99999988887789999999643211 11 112 346777899999999 9988753
No 98
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.17 E-value=5.2e-11 Score=101.26 Aligned_cols=97 Identities=22% Similarity=0.345 Sum_probs=73.9
Q ss_pred EEEEcCCcChHHHHHHhcC---CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE-
Q psy19 315 FLDPMCGGGTIPVECSLSY---PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT- 390 (494)
Q Consensus 315 VLDP~CGSGtilIEAA~~~---~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt- 390 (494)
|||+|||+|+.+...+..+ +...++|+|+++.|++.|+++....+. .+++.++|+.+++...++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~------~~~~~~~D~~~l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP------KVRFVQADARDLPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT------TSEEEESCTTCHHHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC------ceEEEECCHhHCcccCCCeeEEEEc
Confidence 7999999999999988775 347999999999999999999986442 468999999999876779999999
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCc
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIG 424 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G 424 (494)
...+.. +. .+-...+++++.++|+|| |
T Consensus 75 ~~~~~~-~~-----~~~~~~ll~~~~~~l~pg-G 101 (101)
T PF13649_consen 75 GLSLHH-LS-----PEELEALLRRIARLLRPG-G 101 (101)
T ss_dssp TTGGGG-SS-----HHHHHHHHHHHHHTEEEE-E
T ss_pred CCccCC-CC-----HHHHHHHHHHHHHHhCCC-C
Confidence 332322 21 223456777899999998 6
No 99
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.16 E-value=4e-10 Score=117.70 Aligned_cols=126 Identities=14% Similarity=0.160 Sum_probs=89.2
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
...+.+...+....... +..|||+|||+|+|++.++.. ...|+|+|+++.|++.|++|+..+++ .++.++++
T Consensus 190 ~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~~-----~~v~~~~~ 261 (362)
T PRK05031 190 AVNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANGI-----DNVQIIRM 261 (362)
T ss_pred HHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhCC-----CcEEEEEC
Confidence 35566666665555432 357999999999999977765 35899999999999999999998875 25789999
Q ss_pred ccccc-c-CC--------------CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHH
Q psy19 374 NVRQL-C-FK--------------PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLI 437 (494)
Q Consensus 374 Da~~l-~-~~--------------~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~ 437 (494)
|+.+. + +. ...||+||.|||+ .|. +..+++.+.+ + .+++++++++..+.
T Consensus 262 d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR---~G~-------~~~~l~~l~~---~--~~ivyvSC~p~tla 326 (362)
T PRK05031 262 SAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR---AGL-------DDETLKLVQA---Y--ERILYISCNPETLC 326 (362)
T ss_pred CHHHHHHHHhhcccccccccccccCCCCCEEEECCCC---CCC-------cHHHHHHHHc---c--CCEEEEEeCHHHHH
Confidence 98764 1 11 1258999999996 332 2233333433 3 45788888987676
Q ss_pred HHHHh
Q psy19 438 QALHI 442 (494)
Q Consensus 438 ~~l~~ 442 (494)
+.+..
T Consensus 327 rDl~~ 331 (362)
T PRK05031 327 ENLET 331 (362)
T ss_pred HHHHH
Confidence 65553
No 100
>PRK08317 hypothetical protein; Provisional
Probab=99.15 E-value=8e-10 Score=106.77 Aligned_cols=118 Identities=23% Similarity=0.279 Sum_probs=91.9
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 299 lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
+-..++.+....++.+|||+|||+|.+++.++..+ +...++|+|+++.+++.|+.+.... ...+.+...|+..
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~------~~~~~~~~~d~~~ 80 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL------GPNVEFVRGDADG 80 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC------CCceEEEeccccc
Confidence 34455667788889999999999999999998776 6679999999999999999984321 2356788899988
Q ss_pred ccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 378 LCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 378 l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
.++.++.||+|+++--+.. ..+ ...+++++.++|+|| |.+++..+
T Consensus 81 ~~~~~~~~D~v~~~~~~~~----~~~----~~~~l~~~~~~L~~g-G~l~~~~~ 125 (241)
T PRK08317 81 LPFPDGSFDAVRSDRVLQH----LED----PARALAEIARVLRPG-GRVVVLDT 125 (241)
T ss_pred CCCCCCCceEEEEechhhc----cCC----HHHHHHHHHHHhcCC-cEEEEEec
Confidence 8777789999999754331 112 245667899999999 99887654
No 101
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.15 E-value=4.6e-10 Score=121.11 Aligned_cols=114 Identities=15% Similarity=0.185 Sum_probs=89.7
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
..++..+.+.++.+|||+|||+|.+++.++... ++.++|+|+++.+++.|+.|+... ..++.+.++|+...++
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~------~~~v~~~~~d~~~~~~ 328 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR------KCSVEFEVADCTKKTY 328 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC------CCceEEEEcCcccCCC
Confidence 445566667788899999999999998888765 679999999999999999987622 3457899999998887
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
++++||+|++.--+.. + .+ ...+++++.++|+|| |++++..
T Consensus 329 ~~~~fD~I~s~~~l~h-~---~d----~~~~l~~~~r~Lkpg-G~l~i~~ 369 (475)
T PLN02336 329 PDNSFDVIYSRDTILH-I---QD----KPALFRSFFKWLKPG-GKVLISD 369 (475)
T ss_pred CCCCEEEEEECCcccc-c---CC----HHHHHHHHHHHcCCC-eEEEEEE
Confidence 7778999999643321 1 12 346677899999999 9988754
No 102
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.14 E-value=6.7e-10 Score=115.70 Aligned_cols=126 Identities=15% Similarity=0.169 Sum_probs=89.7
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
.+.+.|...++.++...+ ..|||+|||+|+|++.++... ..|+|+|+++.|++.|++|+..+++ .++.++++
T Consensus 181 ~~~~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~-----~~v~~~~~ 252 (353)
T TIGR02143 181 AVNIKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNI-----DNVQIIRM 252 (353)
T ss_pred HHHHHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEEc
Confidence 355666666666655333 469999999999999777663 5899999999999999999998875 24789999
Q ss_pred ccccccC-----------C-----CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHH
Q psy19 374 NVRQLCF-----------K-----PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLI 437 (494)
Q Consensus 374 Da~~l~~-----------~-----~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~ 437 (494)
|+.++-. . ...+|+|+.||| |.|.. ..+++.+.+ | ++++.+++++..+.
T Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP---R~G~~-------~~~l~~l~~---~--~~ivYvsC~p~tla 317 (353)
T TIGR02143 253 SAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP---RAGLD-------PDTCKLVQA---Y--ERILYISCNPETLK 317 (353)
T ss_pred CHHHHHHHHhhccccccccccccccCCCCEEEECCC---CCCCc-------HHHHHHHHc---C--CcEEEEEcCHHHHH
Confidence 9876411 0 013799999999 44432 222333332 3 56888889987777
Q ss_pred HHHHh
Q psy19 438 QALHI 442 (494)
Q Consensus 438 ~~l~~ 442 (494)
+.+..
T Consensus 318 RDl~~ 322 (353)
T TIGR02143 318 ANLEQ 322 (353)
T ss_pred HHHHH
Confidence 76654
No 103
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.13 E-value=5.8e-10 Score=109.53 Aligned_cols=107 Identities=16% Similarity=0.258 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCcChHHHHHHhc--CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLS--YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG 387 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~--~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~ 387 (494)
.++.+|||+|||+|.+++.++.. +|+++++|+|+++.|++.|++++...+. ..++.++++|+..++++ .+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~--~~d~ 125 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS----EIPVEILCNDIRHVEIK--NASM 125 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEECChhhCCCC--CCCE
Confidence 47789999999999999988875 3678999999999999999999986542 34578999999988764 5888
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
|+++-.... + ...+ ...+++++.++|+|| |.+++.
T Consensus 126 v~~~~~l~~-~-~~~~----~~~~l~~i~~~Lkpg-G~l~i~ 160 (239)
T TIGR00740 126 VILNFTLQF-L-PPED----RIALLTKIYEGLNPN-GVLVLS 160 (239)
T ss_pred Eeeecchhh-C-CHHH----HHHHHHHHHHhcCCC-eEEEEe
Confidence 988654331 1 1111 346777999999999 988775
No 104
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.13 E-value=3.1e-10 Score=113.88 Aligned_cols=116 Identities=21% Similarity=0.273 Sum_probs=88.6
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCC---CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH---TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~---~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
++...++..|..... ..+.+|||+|||+|.++..++...+. ..++|+|+++.|++.|+++.. .+.+
T Consensus 69 ~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~----------~~~~ 137 (272)
T PRK11088 69 PLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP----------QVTF 137 (272)
T ss_pred HHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC----------CCeE
Confidence 577777776665543 35578999999999998887766542 479999999999999987532 2468
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHH
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHL 436 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l 436 (494)
..+|+.++|+++++||+|++.- . . .+++++.|+|+|| |+++++++....+
T Consensus 138 ~~~d~~~lp~~~~sfD~I~~~~--~-----~--------~~~~e~~rvLkpg-G~li~~~p~~~~l 187 (272)
T PRK11088 138 CVASSHRLPFADQSLDAIIRIY--A-----P--------CKAEELARVVKPG-GIVITVTPGPRHL 187 (272)
T ss_pred EEeecccCCCcCCceeEEEEec--C-----C--------CCHHHHHhhccCC-CEEEEEeCCCcch
Confidence 8899999998888999999842 1 1 1234788999999 9999998875433
No 105
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.13 E-value=6.5e-10 Score=116.80 Aligned_cols=122 Identities=20% Similarity=0.176 Sum_probs=88.0
Q ss_pred chHHHHHHHHHHhCCC-CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASPI-PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~~-~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
....|...++...... ++.+|||+|||+|.+++.+|...+...|+++|+|+.+++.+++|++.+++. .+.+.++
T Consensus 40 ~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-----~~~v~~~ 114 (382)
T PRK04338 40 LNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-----NEKVFNK 114 (382)
T ss_pred chhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-----ceEEEhh
Confidence 4445555555544332 457899999999999999987654458999999999999999999998752 3468899
Q ss_pred ccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 374 Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
|+..+......||+|+.||| |.. ..|+..+.+.++++ |.+++-..|..
T Consensus 115 Da~~~l~~~~~fD~V~lDP~-Gs~-----------~~~l~~al~~~~~~-gilyvSAtD~~ 162 (382)
T PRK04338 115 DANALLHEERKFDVVDIDPF-GSP-----------APFLDSAIRSVKRG-GLLCVTATDTA 162 (382)
T ss_pred hHHHHHhhcCCCCEEEECCC-CCc-----------HHHHHHHHHHhcCC-CEEEEEecCch
Confidence 99775221357999999986 421 13444556677887 87777655543
No 106
>KOG1540|consensus
Probab=99.13 E-value=6.4e-10 Score=108.44 Aligned_cols=115 Identities=20% Similarity=0.196 Sum_probs=90.2
Q ss_pred HHhCCCCCCEEEEEcCCcChHHHHHHhcCCC------CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 305 RLASPIPGDVFLDPMCGGGTIPVECSLSYPH------TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGSGtilIEAA~~~~~------~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
...++.++..+||.+||||-++.-....-+. .+|+..||+|.|+..+++.+...++.. ...+.++.+|+.++
T Consensus 94 ~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~--~~~~~w~~~dAE~L 171 (296)
T KOG1540|consen 94 SKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKA--SSRVEWVEGDAEDL 171 (296)
T ss_pred hccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCc--CCceEEEeCCcccC
Confidence 4456677899999999999887766554332 689999999999999999997655422 23478999999999
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
||++.+||.... -||.|--.+ ..+.++++.|+|||| |++.++-
T Consensus 172 pFdd~s~D~yTi--afGIRN~th------~~k~l~EAYRVLKpG-Grf~cLe 214 (296)
T KOG1540|consen 172 PFDDDSFDAYTI--AFGIRNVTH------IQKALREAYRVLKPG-GRFSCLE 214 (296)
T ss_pred CCCCCcceeEEE--ecceecCCC------HHHHHHHHHHhcCCC-cEEEEEE
Confidence 999999998776 477765443 346777999999999 9888753
No 107
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.13 E-value=2.2e-10 Score=117.60 Aligned_cols=110 Identities=19% Similarity=0.221 Sum_probs=86.1
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
+.++.+|||+|||+|.++..++.. +..|+|+|+++++++.|+.++...+. ...+.++++|+.++++.+++||+|
T Consensus 129 ~~~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~----~~~i~~~~~dae~l~~~~~~FD~V 202 (322)
T PLN02396 129 PFEGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPV----TSTIEYLCTTAEKLADEGRKFDAV 202 (322)
T ss_pred CCCCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCc----ccceeEEecCHHHhhhccCCCCEE
Confidence 346789999999999999888765 78999999999999999998765432 245789999999887766799999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
++.=- +....+ ...|++++.++|||| |.+++.+.+.
T Consensus 203 i~~~v----LeHv~d----~~~~L~~l~r~LkPG-G~liist~nr 238 (322)
T PLN02396 203 LSLEV----IEHVAN----PAEFCKSLSALTIPN-GATVLSTINR 238 (322)
T ss_pred EEhhH----HHhcCC----HHHHHHHHHHHcCCC-cEEEEEECCc
Confidence 99321 111112 246888999999999 9999887654
No 108
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.12 E-value=8e-10 Score=112.62 Aligned_cols=116 Identities=12% Similarity=0.105 Sum_probs=90.7
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 299 lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
.+..++......++.+|||+|||+|+++++++..+|+.+++++|+ +.+++.|++|+...|+ .++++++.+|+++.
T Consensus 137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl----~~rv~~~~~d~~~~ 211 (306)
T TIGR02716 137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV----ADRMRGIAVDIYKE 211 (306)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc----cceEEEEecCccCC
Confidence 345566677778889999999999999999999999999999998 8999999999997764 45789999999876
Q ss_pred cCCCCCeeEEEE-cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 379 CFKPACVDGIVT-DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 379 ~~~~~~~D~IVt-NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+++ .+|+|++ +-.+. -..+....+++++.+.|+|| |+++++
T Consensus 212 ~~~--~~D~v~~~~~lh~-------~~~~~~~~il~~~~~~L~pg-G~l~i~ 253 (306)
T TIGR02716 212 SYP--EADAVLFCRILYS-------ANEQLSTIMCKKAFDAMRSG-GRLLIL 253 (306)
T ss_pred CCC--CCCEEEeEhhhhc-------CChHHHHHHHHHHHHhcCCC-CEEEEE
Confidence 554 3587764 22111 01122346777899999999 999886
No 109
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.12 E-value=4.9e-09 Score=101.66 Aligned_cols=117 Identities=20% Similarity=0.294 Sum_probs=89.8
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
...++......++.+|||+|||+|.+++.++..++ ...++|+|+++.+++.|++++..++. ...+.+..+|+..+
T Consensus 40 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~ 115 (239)
T PRK00216 40 RRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL----SGNVEFVQGDAEAL 115 (239)
T ss_pred HHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc----ccCeEEEecccccC
Confidence 34455556666788999999999999999988765 58999999999999999999875432 34568899999888
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
++..+.||+|+++- +.. ...+ ...++..+.++|+|| |.++++
T Consensus 116 ~~~~~~~D~I~~~~--~l~--~~~~----~~~~l~~~~~~L~~g-G~li~~ 157 (239)
T PRK00216 116 PFPDNSFDAVTIAF--GLR--NVPD----IDKALREMYRVLKPG-GRLVIL 157 (239)
T ss_pred CCCCCCccEEEEec--ccc--cCCC----HHHHHHHHHHhccCC-cEEEEE
Confidence 76667899999842 211 1122 345667899999999 988775
No 110
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.11 E-value=1.1e-09 Score=105.59 Aligned_cols=115 Identities=14% Similarity=0.014 Sum_probs=90.7
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
..|.+.+.|+.++..+++.+|||+|||+|.+...++... ..++++|+++.+++.|++|+...++ ..+.+..+|
T Consensus 62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~-----~~v~~~~~d 134 (212)
T PRK00312 62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGL-----HNVSVRHGD 134 (212)
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCC-----CceEEEECC
Confidence 567788888888888899999999999999987766663 4899999999999999999997754 236889999
Q ss_pred cccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 375 VRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+.......+.||+|+++.+.. .+.+.+.+.|+|| |++++...
T Consensus 135 ~~~~~~~~~~fD~I~~~~~~~--------------~~~~~l~~~L~~g-G~lv~~~~ 176 (212)
T PRK00312 135 GWKGWPAYAPFDRILVTAAAP--------------EIPRALLEQLKEG-GILVAPVG 176 (212)
T ss_pred cccCCCcCCCcCEEEEccCch--------------hhhHHHHHhcCCC-cEEEEEEc
Confidence 865422336899999986532 1123467899999 99888766
No 111
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.4e-09 Score=106.52 Aligned_cols=132 Identities=17% Similarity=0.237 Sum_probs=107.8
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
+..+-|.=++.++..++..+|.+|+|.|.|||.+...+|.. .|..+++.+|+.++.++.|++|++.+++ .+++.+
T Consensus 75 tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l----~d~v~~ 150 (256)
T COG2519 75 TQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL----GDRVTL 150 (256)
T ss_pred CceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc----ccceEE
Confidence 44566666778888999999999999999999999888863 5668999999999999999999998865 455788
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHh
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHI 442 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~ 442 (494)
..+|+.+.-.. ..||+|+.|.| +-+ ..++.+.+.|+|| |.+++++|..+.+.+.+..
T Consensus 151 ~~~Dv~~~~~~-~~vDav~LDmp---------~PW----~~le~~~~~Lkpg-g~~~~y~P~veQv~kt~~~ 207 (256)
T COG2519 151 KLGDVREGIDE-EDVDAVFLDLP---------DPW----NVLEHVSDALKPG-GVVVVYSPTVEQVEKTVEA 207 (256)
T ss_pred Eeccccccccc-cccCEEEEcCC---------ChH----HHHHHHHHHhCCC-cEEEEEcCCHHHHHHHHHH
Confidence 88999887554 48999999988 112 3555799999999 9999999987666665443
No 112
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.10 E-value=7.1e-10 Score=111.00 Aligned_cols=110 Identities=22% Similarity=0.295 Sum_probs=90.7
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCC
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP 382 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~ 382 (494)
++..++.++|.+|||+|||-|.+++.||..+ +++|+|+++++.+.+.+++.+...|+ ..+++++..|..++.
T Consensus 64 ~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl----~~~v~v~l~d~rd~~--- 135 (283)
T COG2230 64 ILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGL----EDNVEVRLQDYRDFE--- 135 (283)
T ss_pred HHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCC----CcccEEEeccccccc---
Confidence 4455678999999999999999999999987 79999999999999999999998876 456788889988874
Q ss_pred CCeeEEEEcCCCccccCCccc-hHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 383 ACVDGIVTDLPFGKRVGSKSN-NFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~~~~~~-~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+.||.||+ ++--+. ..+-|..|++.+.++|+|| |++++
T Consensus 136 e~fDrIvS-------vgmfEhvg~~~~~~ff~~~~~~L~~~-G~~ll 174 (283)
T COG2230 136 EPFDRIVS-------VGMFEHVGKENYDDFFKKVYALLKPG-GRMLL 174 (283)
T ss_pred cccceeee-------hhhHHHhCcccHHHHHHHHHhhcCCC-ceEEE
Confidence 45999998 321111 1233888999999999999 98876
No 113
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.10 E-value=2.9e-10 Score=114.28 Aligned_cols=94 Identities=16% Similarity=0.156 Sum_probs=79.3
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
..+.+.++..++..+.+.++..|||+|||+|.+...++... ..++|+|+|+.+++.+++|+.. .++.+++
T Consensus 24 fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~--------~~v~~i~ 93 (272)
T PRK00274 24 FLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE--------DNLTIIE 93 (272)
T ss_pred cCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc--------CceEEEE
Confidence 34677889999998888889999999999999999998874 4899999999999999988742 3468999
Q ss_pred eccccccCCCCCeeEEEEcCCCcc
Q psy19 373 CNVRQLCFKPACVDGIVTDLPFGK 396 (494)
Q Consensus 373 ~Da~~l~~~~~~~D~IVtNPPYG~ 396 (494)
+|+.++++++-.++.||+||||..
T Consensus 94 ~D~~~~~~~~~~~~~vv~NlPY~i 117 (272)
T PRK00274 94 GDALKVDLSELQPLKVVANLPYNI 117 (272)
T ss_pred ChhhcCCHHHcCcceEEEeCCccc
Confidence 999988764322699999999975
No 114
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=99.08 E-value=8.1e-10 Score=119.64 Aligned_cols=174 Identities=17% Similarity=0.198 Sum_probs=117.3
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC----CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP----HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~----~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
++..+...|+.+..+++..+|+||+||||++++.++.... ...++|.|+++.....|++|+-.+|++. .+.+
T Consensus 170 TP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~----~~~i 245 (489)
T COG0286 170 TPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG----DANI 245 (489)
T ss_pred ChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc----cccc
Confidence 4556677777888878888999999999999999887642 2679999999999999999999988632 3456
Q ss_pred eeeccccccCC-----CCCeeEEEEcCCCc-cccCCcc----------------chHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 371 LVCNVRQLCFK-----PACVDGIVTDLPFG-KRVGSKS----------------NNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 371 ~~~Da~~l~~~-----~~~~D~IVtNPPYG-~r~~~~~----------------~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
..+|...-|.. .+.||.||+||||+ ....... .-..-+-.|+.++...|+|+ |++++
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~-g~aai 324 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPG-GRAAI 324 (489)
T ss_pred cccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCC-ceEEE
Confidence 67776655432 25799999999996 2221100 00112346899999999999 89998
Q ss_pred EecCHHHH--------HHHHHhccccceeeee---EEEccCCceEEEEEEeeCCCCC
Q psy19 429 LTSDRKHL--------IQALHITSALWKCRKQ---IKINMSGMKSFVFILNRTADLF 474 (494)
Q Consensus 429 lt~~~~~l--------~~~l~~~~~l~~~~~~---~~v~~Ggl~~~i~v~~~~~~~~ 474 (494)
+.++..++ ++.+-. ..++...-. -.+.+-|..+.|.++.+....-
T Consensus 325 vl~~gvlfr~~~e~~IR~~l~~-~~~~~~ii~lp~~lF~~t~i~~~Il~l~k~k~~~ 380 (489)
T COG0286 325 VLPDGVLFRGGAEKDIRKDLLE-DNLLEAIIGLPTGLFYNTGIPTNILFLTKNKPAE 380 (489)
T ss_pred EecCCcCcCCCchHHHHHHHHh-ccceEEeeeCChhhcccCCCCeEEEEeecCCCCC
Confidence 87754222 222221 100111000 1234558888888888766555
No 115
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.07 E-value=6.3e-10 Score=110.96 Aligned_cols=91 Identities=14% Similarity=0.191 Sum_probs=80.0
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
+.++++..++..++..++..|||+|||+|++.++++.. +..++|+|+|+.+++.+++++.. ..++.++++|
T Consensus 13 ~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~-------~~~v~ii~~D 83 (258)
T PRK14896 13 IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA-------AGNVEIIEGD 83 (258)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc-------CCCEEEEEec
Confidence 68899999999998888999999999999999999987 56899999999999999998863 1357899999
Q ss_pred cccccCCCCCeeEEEEcCCCcc
Q psy19 375 VRQLCFKPACVDGIVTDLPFGK 396 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~ 396 (494)
+.+++++ .+|.||+||||..
T Consensus 84 ~~~~~~~--~~d~Vv~NlPy~i 103 (258)
T PRK14896 84 ALKVDLP--EFNKVVSNLPYQI 103 (258)
T ss_pred cccCCch--hceEEEEcCCccc
Confidence 9988764 5899999999975
No 116
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.07 E-value=1.1e-09 Score=110.71 Aligned_cols=103 Identities=14% Similarity=0.107 Sum_probs=81.6
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEc
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTD 391 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtN 391 (494)
+.+|||+|||+|..++.+|.. +..|+|+|+++.+++.+++|+...++ .+.+...|+...++ +++||+|+++
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l------~v~~~~~D~~~~~~-~~~fD~I~~~ 191 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL------NIRTGLYDINSASI-QEEYDFILST 191 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC------ceEEEEechhcccc-cCCccEEEEc
Confidence 458999999999999999886 68999999999999999999987654 35677788876655 4789999998
Q ss_pred CCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 392 LPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 392 PPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
..+.. +. .+....+++++.++|+|| |.++++.
T Consensus 192 ~vl~~-l~-----~~~~~~~l~~~~~~Lkpg-G~~l~v~ 223 (287)
T PRK12335 192 VVLMF-LN-----RERIPAIIKNMQEHTNPG-GYNLIVC 223 (287)
T ss_pred chhhh-CC-----HHHHHHHHHHHHHhcCCC-cEEEEEE
Confidence 65431 11 123557788999999999 9877654
No 117
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.06 E-value=3.3e-10 Score=105.08 Aligned_cols=78 Identities=17% Similarity=0.245 Sum_probs=58.6
Q ss_pred CEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--CCCCC-eeEEE
Q psy19 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--FKPAC-VDGIV 389 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~~~~~-~D~IV 389 (494)
.+|+|.|||.|+-.|..|+.+ .+|+++|+|+..++.|+.|++.+|+ .+++.++++|+.++. +.... +|+|.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv----~~~I~~i~gD~~~~~~~~~~~~~~D~vF 74 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGV----ADNIDFICGDFFELLKRLKSNKIFDVVF 74 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-----GGGEEEEES-HHHHGGGB------SEEE
T ss_pred CEEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEeCCHHHHHhhccccccccEEE
Confidence 379999999999999999984 5899999999999999999999875 678899999998873 22222 79999
Q ss_pred EcCCCcc
Q psy19 390 TDLPFGK 396 (494)
Q Consensus 390 tNPPYG~ 396 (494)
++||||.
T Consensus 75 lSPPWGG 81 (163)
T PF09445_consen 75 LSPPWGG 81 (163)
T ss_dssp E---BSS
T ss_pred ECCCCCC
Confidence 9999984
No 118
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.05 E-value=7.3e-10 Score=107.74 Aligned_cols=107 Identities=23% Similarity=0.259 Sum_probs=86.3
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
+|.+|||.|||.|.++..+|.+ |+.|+|+|+++++|+.|+..+...|++ +++.+..+.++....++||+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~------i~y~~~~~edl~~~~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVN------IDYRQATVEDLASAGGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhcccc------ccchhhhHHHHHhcCCCccEEEE
Confidence 7889999999999999999998 799999999999999999999987762 45677777777544479999999
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
. +-+..-.+ -..|++.+.+.+||| |.+++-|.+..
T Consensus 131 m----EVlEHv~d----p~~~~~~c~~lvkP~-G~lf~STinrt 165 (243)
T COG2227 131 M----EVLEHVPD----PESFLRACAKLVKPG-GILFLSTINRT 165 (243)
T ss_pred h----hHHHccCC----HHHHHHHHHHHcCCC-cEEEEeccccC
Confidence 4 12222222 235778999999999 99999988764
No 119
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.05 E-value=1.9e-09 Score=102.16 Aligned_cols=119 Identities=15% Similarity=0.093 Sum_probs=79.8
Q ss_pred HhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-----
Q psy19 306 LASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC----- 379 (494)
Q Consensus 306 la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~----- 379 (494)
...+.++.+|||+|||+|.+...++..+ +..+++|+|+++.+ .. ..+.++++|+.+.+
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~--------~~i~~~~~d~~~~~~~~~l 90 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PI--------ENVDFIRGDFTDEEVLNKI 90 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cC--------CCceEEEeeCCChhHHHHH
Confidence 3456789999999999999988887765 44689999999854 11 12467788876532
Q ss_pred ---CCCCCeeEEEEcC--CC-ccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 380 ---FKPACVDGIVTDL--PF-GKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 380 ---~~~~~~D~IVtNP--PY-G~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
++.++||+|++|+ || |...-...........++..+.++|+|| |++++.......+.+.+.
T Consensus 91 ~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lvi~~~~~~~~~~~l~ 157 (188)
T TIGR00438 91 RERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK-GNFVVKVFQGEEIDEYLN 157 (188)
T ss_pred HHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC-CEEEEEEccCccHHHHHH
Confidence 3346799999995 33 2221111111233567888999999999 999986554333444443
No 120
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.05 E-value=2.3e-09 Score=103.84 Aligned_cols=121 Identities=18% Similarity=0.298 Sum_probs=92.0
Q ss_pred chHHHHHHHHHHhCC---CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 295 LKPTIAYNMVRLASP---IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 295 L~e~lAa~ll~la~~---~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
+...++..++..... ..+.+|||+|||+|.++..++...+...++|+|+++.++..++.++. .++.++
T Consensus 15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~ 85 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---------ENVQFI 85 (240)
T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---------CCCeEE
Confidence 444555556555432 34468999999999999999988877889999999999999987654 135788
Q ss_pred eeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 372 VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 372 ~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
.+|+...++++++||+|+++-.... . .+ ...++.++.++|+|| |.+++.++..
T Consensus 86 ~~d~~~~~~~~~~fD~vi~~~~l~~-~---~~----~~~~l~~~~~~L~~~-G~l~~~~~~~ 138 (240)
T TIGR02072 86 CGDAEKLPLEDSSFDLIVSNLALQW-C---DD----LSQALSELARVLKPG-GLLAFSTFGP 138 (240)
T ss_pred ecchhhCCCCCCceeEEEEhhhhhh-c---cC----HHHHHHHHHHHcCCC-cEEEEEeCCc
Confidence 8999988877789999999865331 1 12 345777899999999 9988876543
No 121
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.05 E-value=1.1e-09 Score=111.19 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=82.2
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
..+.++..++..+...+++.|||+|||+|.+...++.. +..++|+|+|+.+++.+++|+...+. ..+++++++|
T Consensus 20 ~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~----~~~v~ii~~D 93 (294)
T PTZ00338 20 KNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPL----ASKLEVIEGD 93 (294)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCC----CCcEEEEECC
Confidence 57899999999999989999999999999999888876 56899999999999999999986542 3467899999
Q ss_pred cccccCCCCCeeEEEEcCCCccc
Q psy19 375 VRQLCFKPACVDGIVTDLPFGKR 397 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~r 397 (494)
+...++ ..+|.||+||||...
T Consensus 94 al~~~~--~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 94 ALKTEF--PYFDVCVANVPYQIS 114 (294)
T ss_pred Hhhhcc--cccCEEEecCCcccC
Confidence 988765 368999999999754
No 122
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.04 E-value=1.9e-09 Score=104.35 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=80.1
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--------
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-------- 379 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-------- 379 (494)
.+++.+|||+|||+|.+...++... +...|+|+|+++. .. . ..+.++++|+.+.+
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~----~-~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DP----I-VGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cC----C-CCcEEEecCCCChHHHHHHHHH
Confidence 4678899999999999998888775 3468999999981 11 1 12578999998853
Q ss_pred CCCCCeeEEEEcC-CCccccC--CccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHh
Q psy19 380 FKPACVDGIVTDL-PFGKRVG--SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHI 442 (494)
Q Consensus 380 ~~~~~~D~IVtNP-PYG~r~~--~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~ 442 (494)
+..++||+|++|+ |+-.... +......+...+|+.+.++|+|| |.+++.+.....+.+.+..
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpG-G~~vi~~~~~~~~~~~l~~ 177 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPG-GSFVVKVFQGEGFDEYLRE 177 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEEecCcCHHHHHHH
Confidence 4557899999997 5321111 10111123467899999999999 9999855543334444443
No 123
>PRK04457 spermidine synthase; Provisional
Probab=99.03 E-value=1.5e-08 Score=101.31 Aligned_cols=128 Identities=15% Similarity=0.140 Sum_probs=92.0
Q ss_pred cccchHHHHHHHHH-HhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 292 ITTLKPTIAYNMVR-LASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 292 ~a~L~e~lAa~ll~-la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
|..+.-....+|+. +....++.+|||+|||+|+++..++..+|+..++++|+|+.+++.|+++....+ ...++++
T Consensus 46 P~~l~~~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~----~~~rv~v 121 (262)
T PRK04457 46 PSELELAYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE----NGERFEV 121 (262)
T ss_pred cccccCHHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC----CCCceEE
Confidence 44454344555533 333345678999999999999999888899999999999999999999976432 1356789
Q ss_pred eeeccccc-cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 371 LVCNVRQL-CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 371 ~~~Da~~l-~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+.+|+.+. .-..++||+|++|. |... +.... .....|++.+.+.|+|| |.+++
T Consensus 122 ~~~Da~~~l~~~~~~yD~I~~D~-~~~~-~~~~~--l~t~efl~~~~~~L~pg-Gvlvi 175 (262)
T PRK04457 122 IEADGAEYIAVHRHSTDVILVDG-FDGE-GIIDA--LCTQPFFDDCRNALSSD-GIFVV 175 (262)
T ss_pred EECCHHHHHHhCCCCCCEEEEeC-CCCC-CCccc--cCcHHHHHHHHHhcCCC-cEEEE
Confidence 99998765 22235899999995 3211 11111 11357888999999999 99887
No 124
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.02 E-value=1.8e-09 Score=104.55 Aligned_cols=103 Identities=13% Similarity=0.084 Sum_probs=82.7
Q ss_pred EEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcCC
Q psy19 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLP 393 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPP 393 (494)
+|||+|||+|.+++.++..++++.++|+|+++.+++.|+.++...|+ ..++.+...|+...+++ ++||+|++.--
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl----~~~i~~~~~d~~~~~~~-~~fD~I~~~~~ 76 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL----QGRIRIFYRDSAKDPFP-DTYDLVFGFEV 76 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC----CcceEEEecccccCCCC-CCCCEeehHHH
Confidence 69999999999999999887778999999999999999999987654 45678999998766554 58999998432
Q ss_pred CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 394 FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 394 YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+.. + .+ ...+++++.++|+|| |++++..
T Consensus 77 l~~-~---~~----~~~~l~~~~~~Lkpg-G~l~i~~ 104 (224)
T smart00828 77 IHH-I---KD----KMDLFSNISRHLKDG-GHLVLAD 104 (224)
T ss_pred HHh-C---CC----HHHHHHHHHHHcCCC-CEEEEEE
Confidence 211 1 12 356777899999999 9988754
No 125
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.02 E-value=2.1e-08 Score=96.16 Aligned_cols=113 Identities=20% Similarity=0.366 Sum_probs=86.6
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH-TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~-~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
.++.+....++.+|||+|||+|.++..++..++. ..++|+|+++.++..++.+.. . ...+.+..+|+.++++
T Consensus 30 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~------~~~i~~~~~d~~~~~~ 102 (223)
T TIGR01934 30 RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L------PLNIEFIQADAEALPF 102 (223)
T ss_pred HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c------CCCceEEecchhcCCC
Confidence 3445555557889999999999999988887764 689999999999999999875 1 2346788999998876
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
..+.||+|+++--+ . ...+ ...+++.+.++|+|| |+++++.
T Consensus 103 ~~~~~D~i~~~~~~--~--~~~~----~~~~l~~~~~~L~~g-G~l~~~~ 143 (223)
T TIGR01934 103 EDNSFDAVTIAFGL--R--NVTD----IQKALREMYRVLKPG-GRLVILE 143 (223)
T ss_pred CCCcEEEEEEeeee--C--Cccc----HHHHHHHHHHHcCCC-cEEEEEE
Confidence 66789999985322 1 1112 346777899999999 9988754
No 126
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.01 E-value=5.2e-09 Score=107.54 Aligned_cols=119 Identities=16% Similarity=0.012 Sum_probs=91.3
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
....|.+.+.|+..+.++++.+|||+|||+|.+++.++...+ ...|+|+|+++.+++.|++|+..+|. .++.++
T Consensus 62 ~~~~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-----~nV~~i 136 (322)
T PRK13943 62 TSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-----ENVIFV 136 (322)
T ss_pred cCCcHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEE
Confidence 345677777888888888999999999999999998887643 24799999999999999999997764 346788
Q ss_pred eeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 372 VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 372 ~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
++|+.......+.||+|+++. +. ..+ ...+.+.|+|| |++++...
T Consensus 137 ~gD~~~~~~~~~~fD~Ii~~~--g~--------~~i----p~~~~~~Lkpg-G~Lvv~~~ 181 (322)
T PRK13943 137 CGDGYYGVPEFAPYDVIFVTV--GV--------DEV----PETWFTQLKEG-GRVIVPIN 181 (322)
T ss_pred eCChhhcccccCCccEEEECC--ch--------HHh----HHHHHHhcCCC-CEEEEEeC
Confidence 999877644446799999962 11 111 12466789999 99887554
No 127
>PF02926 THUMP: THUMP domain; InterPro: IPR004114 The THUMP domain is shared by 4-thiouridine, pseudouridine synthases and RNA methylases[] and is probably an RNA-binding domain that adopts an alpha/beta fold similar to that found in the C-terminal domain of translation initiation factor 3 and ribosomal protein S8. The THUMP domain probably functions by delivering a variety of RNA modification enzymes to their targets []. This domain is found in the thiamine biosynthesis proteins (ThiI) (see IPR003720 from INTERPRO).; PDB: 3TLJ_A 3TM5_B 3TM4_A 2DIR_A 3TMA_A 1VBK_B 3K0B_A 2C5S_A 3LDU_A 3V8V_B ....
Probab=99.01 E-value=5.9e-10 Score=100.47 Aligned_cols=58 Identities=36% Similarity=0.599 Sum_probs=54.6
Q ss_pred EEEEEEEEecCc-ccChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEEEecCcceeccc
Q psy19 219 KFRVTCNRVGKH-TVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLP 276 (494)
Q Consensus 219 tFrV~~~~~g~~-~~~s~~~~~~v~~aI~d~~~~~vdl~~pdi~i~v~l~~~~~~l~l~ 276 (494)
||+|.+++.+++ .|+|+++++.+|++|.+.++++||+++||+.|++.+.++.++++++
T Consensus 85 tF~V~~~r~~~~~~~~s~ei~~~vg~~i~~~~~~~Vdl~~Pd~~i~Vev~~~~~~i~i~ 143 (144)
T PF02926_consen 85 TFAVRCRRRGKHFPFTSMEIEREVGDAIKEKGGPKVDLKNPDVVIHVEVRKDKCYISID 143 (144)
T ss_dssp EEEEEEEEESSSSSSCHHHHHHHHHHHHHHHHHTEE-SSSSSEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEcCCccccCHHHHHHHHHHHHHHHhCCCccCcCcCEEEEEEEECCEEEEEEe
Confidence 899999999977 8999999999999999999999999999999999999999999875
No 128
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.00 E-value=9.4e-09 Score=101.74 Aligned_cols=140 Identities=15% Similarity=0.163 Sum_probs=99.6
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
+-+.=+..|+.+++..||.+||+.|.|||.+...+|.. .|..+|+.+|++++.++.|++|++.+|+ .+.+.+.+.
T Consensus 24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl----~~~v~~~~~ 99 (247)
T PF08704_consen 24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL----DDNVTVHHR 99 (247)
T ss_dssp --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC----CTTEEEEES
T ss_pred eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC----CCCceeEec
Confidence 34445667888899999999999999999999988854 6778999999999999999999998875 457889999
Q ss_pred ccccccCC---CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcc-cCCCcEEEEEecCHHHHHHH---HHhcccc
Q psy19 374 NVRQLCFK---PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIV-RPQIGRAILLTSDRKHLIQA---LHITSAL 446 (494)
Q Consensus 374 Da~~l~~~---~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvL-kpg~G~lvllt~~~~~l~~~---l~~~~~l 446 (494)
|+..-.+. +..+|.|+.|.|--. ..+..+.+.| ++| |++++++|..+.+.+. +++.+
T Consensus 100 Dv~~~g~~~~~~~~~DavfLDlp~Pw-------------~~i~~~~~~L~~~g-G~i~~fsP~ieQv~~~~~~L~~~g-- 163 (247)
T PF08704_consen 100 DVCEEGFDEELESDFDAVFLDLPDPW-------------EAIPHAKRALKKPG-GRICCFSPCIEQVQKTVEALREHG-- 163 (247)
T ss_dssp -GGCG--STT-TTSEEEEEEESSSGG-------------GGHHHHHHHE-EEE-EEEEEEESSHHHHHHHHHHHHHTT--
T ss_pred ceecccccccccCcccEEEEeCCCHH-------------HHHHHHHHHHhcCC-ceEEEECCCHHHHHHHHHHHHHCC--
Confidence 98754332 257999999998321 2233577789 898 9999999987655544 44444
Q ss_pred ceeeeeEE
Q psy19 447 WKCRKQIK 454 (494)
Q Consensus 447 ~~~~~~~~ 454 (494)
|.....+.
T Consensus 164 f~~i~~~E 171 (247)
T PF08704_consen 164 FTDIETVE 171 (247)
T ss_dssp EEEEEEEE
T ss_pred CeeeEEEE
Confidence 34444433
No 129
>PRK05785 hypothetical protein; Provisional
Probab=99.00 E-value=5.5e-09 Score=102.26 Aligned_cols=90 Identities=17% Similarity=0.260 Sum_probs=71.9
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
++.+|||+|||||.++..++... +..++|+|+++.|++.|+... ..+++|+..+|+++++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~-------------~~~~~d~~~lp~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD-------------DKVVGSFEALPFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc-------------ceEEechhhCCCCCCCEEEEEe
Confidence 36799999999999999888765 469999999999999998631 2467899999998899999999
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCC
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQ 422 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg 422 (494)
+. +.+. ..+ ...+++++.|+|||.
T Consensus 117 ~~--~l~~--~~d----~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 117 SF--ALHA--SDN----IEKVIAEFTRVSRKQ 140 (226)
T ss_pred cC--hhhc--cCC----HHHHHHHHHHHhcCc
Confidence 64 3332 123 346777999999986
No 130
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.99 E-value=4.1e-09 Score=110.93 Aligned_cols=109 Identities=25% Similarity=0.270 Sum_probs=85.0
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCC
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP 382 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~ 382 (494)
++..++.+++.+|||+|||+|.+++.++... ++.|+|+|+++.+++.|++++. +. .+++...|+..+ +
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~--~l------~v~~~~~D~~~l---~ 226 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--GL------PVEIRLQDYRDL---N 226 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc--cC------eEEEEECchhhc---C
Confidence 4455667899999999999999999888754 5799999999999999999885 21 256778888765 3
Q ss_pred CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
++||.|++...+. .++. .-+..+++++.++|+|| |.+++.+
T Consensus 227 ~~fD~Ivs~~~~e-hvg~-----~~~~~~l~~i~r~LkpG-G~lvl~~ 267 (383)
T PRK11705 227 GQFDRIVSVGMFE-HVGP-----KNYRTYFEVVRRCLKPD-GLFLLHT 267 (383)
T ss_pred CCCCEEEEeCchh-hCCh-----HHHHHHHHHHHHHcCCC-cEEEEEE
Confidence 6899999976543 1221 22567788999999999 9988754
No 131
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.99 E-value=3.5e-09 Score=104.21 Aligned_cols=117 Identities=12% Similarity=-0.009 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 296 ~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
.+..++.|..++...+..+|||+|||+|..++.+|.. .++.+++++|+++++++.|++|++.+|+ .++++++.+|
T Consensus 53 ~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl----~~~i~~~~gd 128 (234)
T PLN02781 53 PVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV----DHKINFIQSD 128 (234)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEcc
Confidence 3445666666777767789999999999876666554 3357999999999999999999998876 4568999999
Q ss_pred cccc-c-C----CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 375 VRQL-C-F----KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 375 a~~l-~-~----~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+.+. + + +.++||+|+.|.+ ...|..++..+.++|+|| |.+++
T Consensus 129 a~~~L~~l~~~~~~~~fD~VfiDa~-----------k~~y~~~~~~~~~ll~~G-G~ii~ 176 (234)
T PLN02781 129 ALSALDQLLNNDPKPEFDFAFVDAD-----------KPNYVHFHEQLLKLVKVG-GIIAF 176 (234)
T ss_pred HHHHHHHHHhCCCCCCCCEEEECCC-----------HHHHHHHHHHHHHhcCCC-eEEEE
Confidence 9775 1 1 1358999999864 133667777899999999 97764
No 132
>PRK00811 spermidine synthase; Provisional
Probab=98.99 E-value=1.5e-08 Score=102.50 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=84.1
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-cCCCCCeeEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-CFKPACVDGIV 389 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~~~~~~~D~IV 389 (494)
...+||++|||+|+++.+++...+..+|.++|+|+.+++.|++++...+....-..+++++.+|+... ....++||+||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 45689999999999999988754456899999999999999999865331111135688999999875 22346899999
Q ss_pred EcC--CCccccCCccchHHHH-HHHHHHHhhcccCCCcEEEEEec
Q psy19 390 TDL--PFGKRVGSKSNNFLLY-RLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 390 tNP--PYG~r~~~~~~~~~ly-~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+|. |++.. ..+| ..|++.+.+.|+|| |.+++-+.
T Consensus 156 ~D~~dp~~~~-------~~l~t~ef~~~~~~~L~~g-Gvlv~~~~ 192 (283)
T PRK00811 156 VDSTDPVGPA-------EGLFTKEFYENCKRALKED-GIFVAQSG 192 (283)
T ss_pred ECCCCCCCch-------hhhhHHHHHHHHHHhcCCC-cEEEEeCC
Confidence 994 55321 1223 46777899999999 98887543
No 133
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.98 E-value=1.7e-09 Score=108.37 Aligned_cols=131 Identities=15% Similarity=0.071 Sum_probs=84.5
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcCh----HHHHHHhcCC-----CCeEEEEeCCHHHHHHHHHHHHh----ccC-
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGT----IPVECSLSYP-----HTFFVCGDINEKLVLKTQANVLH----NSG- 360 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGt----ilIEAA~~~~-----~~~v~G~Did~~al~~Ar~Nl~~----~g~- 360 (494)
|...+.-.++......++.+|+|.|||||- +++.++...+ +..|+|+|+|+.|++.|++++-. .++
T Consensus 83 l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~ 162 (264)
T smart00138 83 LEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLP 162 (264)
T ss_pred HHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCC
Confidence 333333333333333456799999999994 5555554332 47899999999999999986410 011
Q ss_pred -----------------CCCcccceeeeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCC
Q psy19 361 -----------------NLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQI 423 (494)
Q Consensus 361 -----------------~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~ 423 (494)
...+...+.+.++|+.+.+++.+.||+|+|.-=+. .+. ...-..+++++.++|+||
T Consensus 163 ~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~-yf~-----~~~~~~~l~~l~~~L~pG- 235 (264)
T smart00138 163 KALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLI-YFD-----EPTQRKLLNRFAEALKPG- 235 (264)
T ss_pred HHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHH-hCC-----HHHHHHHHHHHHHHhCCC-
Confidence 00122467899999998876667999999931110 010 122346777899999999
Q ss_pred cEEEEEecC
Q psy19 424 GRAILLTSD 432 (494)
Q Consensus 424 G~lvllt~~ 432 (494)
|.+++-.++
T Consensus 236 G~L~lg~~E 244 (264)
T smart00138 236 GYLFLGHSE 244 (264)
T ss_pred eEEEEECcc
Confidence 987765444
No 134
>PLN03075 nicotianamine synthase; Provisional
Probab=98.97 E-value=6.1e-09 Score=105.33 Aligned_cols=109 Identities=16% Similarity=-0.019 Sum_probs=84.8
Q ss_pred CCCEEEEEcCCcC--hHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHh-ccCCCCcccceeeeeeccccccCCCCCeeE
Q psy19 311 PGDVFLDPMCGGG--TIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH-NSGNLNRELKVSPLVCNVRQLCFKPACVDG 387 (494)
Q Consensus 311 ~g~~VLDP~CGSG--tilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~-~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~ 387 (494)
++.+|+|+|||.| |-++.++..+|+..++|+|+|+++++.|++++.. .+ +..++.|..+|+.+.....+.||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g----L~~rV~F~~~Da~~~~~~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD----LSKRMFFHTADVMDVTESLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC----ccCCcEEEECchhhcccccCCcCE
Confidence 6789999999999 6666677778999999999999999999999964 44 456789999999886433468999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
|+++ = -+.-. ..-+.++++.+.+.|+|| |.+++=++
T Consensus 199 VF~~-A---Li~~d---k~~k~~vL~~l~~~LkPG-G~Lvlr~~ 234 (296)
T PLN03075 199 VFLA-A---LVGMD---KEEKVKVIEHLGKHMAPG-ALLMLRSA 234 (296)
T ss_pred EEEe-c---ccccc---cccHHHHHHHHHHhcCCC-cEEEEecc
Confidence 9996 1 11110 122667888999999999 98877654
No 135
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.97 E-value=7e-09 Score=84.95 Aligned_cols=102 Identities=21% Similarity=0.212 Sum_probs=79.1
Q ss_pred EEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC-CCCCeeEEEEcC
Q psy19 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF-KPACVDGIVTDL 392 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~-~~~~~D~IVtNP 392 (494)
+++|+|||+|.++..++. .+...++++|+++.++..++++....+ ...+.+...|+.+... ....+|+|++|+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALL-----ADNVEVLKGDAEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhccc-----ccceEEEEcChhhhccccCCceEEEEEcc
Confidence 489999999999888877 456899999999999999986444222 2456788899888753 346899999999
Q ss_pred CCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 393 PFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 393 PYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
|+... ...+..+++.+.+.|+|+ |.+++.
T Consensus 75 ~~~~~-------~~~~~~~l~~~~~~l~~~-g~~~~~ 103 (107)
T cd02440 75 PLHHL-------VEDLARFLEEARRLLKPG-GVLVLT 103 (107)
T ss_pred ceeeh-------hhHHHHHHHHHHHHcCCC-CEEEEE
Confidence 97642 233567777899999999 987654
No 136
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.97 E-value=2e-08 Score=97.36 Aligned_cols=99 Identities=20% Similarity=0.250 Sum_probs=73.1
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
..++.+|||+|||+|.++..++.. +..++|+|+++.++..|++++...+. ..++.+.++|+..++ ++||+|
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~~~~---~~fD~i 123 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDV----AGNVEFEVNDLLSLC---GEFDIV 123 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECChhhCC---CCcCEE
Confidence 456889999999999999998876 57899999999999999999986543 235788999988765 689999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCC
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQ 422 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg 422 (494)
++.-.+- .. ...+ ...++.++.++++++
T Consensus 124 i~~~~l~-~~-~~~~----~~~~l~~i~~~~~~~ 151 (219)
T TIGR02021 124 VCMDVLI-HY-PASD----MAKALGHLASLTKER 151 (219)
T ss_pred EEhhHHH-hC-CHHH----HHHHHHHHHHHhCCC
Confidence 8732210 01 1111 234566777777754
No 137
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.94 E-value=5.8e-09 Score=99.92 Aligned_cols=121 Identities=25% Similarity=0.336 Sum_probs=91.7
Q ss_pred CEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-c--CCCCCeeEEE
Q psy19 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-C--FKPACVDGIV 389 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~--~~~~~~D~IV 389 (494)
..+||+|||.|.++++.|...|+..++|+|+....+..|...+...++ .++.++++|+..+ . ++++++|.|.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-----~Nv~~~~~da~~~l~~~~~~~~v~~i~ 93 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-----KNVRFLRGDARELLRRLFPPGSVDRIY 93 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-----SSEEEEES-CTTHHHHHSTTTSEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-----cceEEEEccHHHHHhhcccCCchheEE
Confidence 389999999999999999999999999999999999999999998764 4578999999874 2 4458999998
Q ss_pred EcCC--CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 390 TDLP--FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 390 tNPP--YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
.|-| |-++-... .+-+...|+..+.++|+|| |.+.+.|.+..++...+.
T Consensus 94 i~FPDPWpK~rH~k--rRl~~~~fl~~~~~~L~~g-G~l~~~TD~~~y~~~~~~ 144 (195)
T PF02390_consen 94 INFPDPWPKKRHHK--RRLVNPEFLELLARVLKPG-GELYFATDVEEYAEWMLE 144 (195)
T ss_dssp EES-----SGGGGG--GSTTSHHHHHHHHHHEEEE-EEEEEEES-HHHHHHHHH
T ss_pred EeCCCCCcccchhh--hhcCCchHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHH
Confidence 8776 43322111 1223567888999999999 999999998876655544
No 138
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.94 E-value=6.5e-09 Score=108.83 Aligned_cols=104 Identities=17% Similarity=0.106 Sum_probs=81.5
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC-CCCCeeEEE
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPH-TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF-KPACVDGIV 389 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~-~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~-~~~~~D~IV 389 (494)
+.+|||+|||||.++|+++...++ ..|+++|+|+.+++.+++|++.+++ ..+.+++.|+..+-. ....||+|.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-----~~~~v~~~Da~~~l~~~~~~fDvId 119 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-----ENIEVPNEDAANVLRYRNRKFHVID 119 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CcEEEEchhHHHHHHHhCCCCCEEE
Confidence 358999999999999999987433 5899999999999999999998865 246789999987621 125799999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
.|| ||.- ..|+..+.+.++++ |.+.+.+.|.
T Consensus 120 lDP-fGs~-----------~~fld~al~~~~~~-glL~vTaTD~ 150 (374)
T TIGR00308 120 IDP-FGTP-----------APFVDSAIQASAER-GLLLVTATDT 150 (374)
T ss_pred eCC-CCCc-----------HHHHHHHHHhcccC-CEEEEEeccc
Confidence 999 6621 14566788888888 8877765443
No 139
>PTZ00146 fibrillarin; Provisional
Probab=98.92 E-value=3.8e-08 Score=99.27 Aligned_cols=119 Identities=14% Similarity=0.155 Sum_probs=85.3
Q ss_pred ccchHHHHHHHHH---HhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccce
Q psy19 293 TTLKPTIAYNMVR---LASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKV 368 (494)
Q Consensus 293 a~L~e~lAa~ll~---la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i 368 (494)
.|-+..|||+++. ...++++.+|||+|||+|++...+|... +...|+++|+++++++.....+... .++
T Consensus 111 ~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-------~NI 183 (293)
T PTZ00146 111 NPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-------PNI 183 (293)
T ss_pred CCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-------CCC
Confidence 4688999999864 3346899999999999999999988764 3458999999998765444433311 234
Q ss_pred eeeeeccccc---cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 369 SPLVCNVRQL---CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 369 ~~~~~Da~~l---~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
.++..|+... .....++|+|++|... . + -+..++.++.++|||+ |++++.
T Consensus 184 ~~I~~Da~~p~~y~~~~~~vDvV~~Dva~------p-d---q~~il~~na~r~LKpG-G~~vI~ 236 (293)
T PTZ00146 184 VPIIEDARYPQKYRMLVPMVDVIFADVAQ------P-D---QARIVALNAQYFLKNG-GHFIIS 236 (293)
T ss_pred EEEECCccChhhhhcccCCCCEEEEeCCC------c-c---hHHHHHHHHHHhccCC-CEEEEE
Confidence 6788888642 1123579999998741 1 1 1334555789999999 998883
No 140
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.92 E-value=2.6e-08 Score=102.46 Aligned_cols=102 Identities=22% Similarity=0.246 Sum_probs=84.2
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.+|.+|+|+|||.|-|+|.+|.... ..|+++||||.+++..++|++.|++ ...+..+++|++......+.+|-||
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~v----~~~v~~i~gD~rev~~~~~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNKV----EGRVEPILGDAREVAPELGVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcCc----cceeeEEeccHHHhhhccccCCEEE
Confidence 4699999999999999999998743 3399999999999999999999976 4557899999999865447899999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+|.|... ..|+..+.+.+++| |.+.+.
T Consensus 262 m~~p~~a------------~~fl~~A~~~~k~~-g~iHyy 288 (341)
T COG2520 262 MGLPKSA------------HEFLPLALELLKDG-GIIHYY 288 (341)
T ss_pred eCCCCcc------------hhhHHHHHHHhhcC-cEEEEE
Confidence 9988531 24555788888988 876653
No 141
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.91 E-value=2.1e-08 Score=97.32 Aligned_cols=124 Identities=14% Similarity=0.122 Sum_probs=82.9
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCC----------c
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLN----------R 364 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~----------~ 364 (494)
-++.+...+-.+. ..++.+|||||||.|.-++.+|.+ |..|+|+|+++.|++.+.... ++... -
T Consensus 19 p~~~l~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~---~~~~~~~~~~~~~~~~ 92 (213)
T TIGR03840 19 VNPLLVKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAEN---GLTPTVTQQGEFTRYR 92 (213)
T ss_pred CCHHHHHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHc---CCCcceeccccceeee
Confidence 4455555443332 246679999999999999999987 789999999999999864321 11100 1
Q ss_pred ccceeeeeeccccccCC-CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 365 ELKVSPLVCNVRQLCFK-PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 365 ~~~i~~~~~Da~~l~~~-~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
...+++.++|+++++.. .+.||.|+-.--+ +.. .......+++.+.++|+|| |++++++-
T Consensus 93 ~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~---~~l---~~~~R~~~~~~l~~lLkpg-G~~ll~~~ 153 (213)
T TIGR03840 93 AGNIEIFCGDFFALTAADLGPVDAVYDRAAL---IAL---PEEMRQRYAAHLLALLPPG-ARQLLITL 153 (213)
T ss_pred cCceEEEEccCCCCCcccCCCcCEEEechhh---ccC---CHHHHHHHHHHHHHHcCCC-CeEEEEEE
Confidence 23578999999988632 2468877652111 111 1233456777999999999 98766644
No 142
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.89 E-value=1.8e-08 Score=103.20 Aligned_cols=124 Identities=15% Similarity=0.071 Sum_probs=85.9
Q ss_pred ccccchHHHHHH-HHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccccee
Q psy19 291 NITTLKPTIAYN-MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369 (494)
Q Consensus 291 ~~a~L~e~lAa~-ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~ 369 (494)
.++.++..+... ++......+|.+|||+|||+|.+.+.++..++ ..++|+|.++.++..++...+..+. ...+.
T Consensus 100 ~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~----~~~v~ 174 (314)
T TIGR00452 100 IDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDN----DKRAI 174 (314)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhcc----CCCeE
Confidence 355566665533 34444566788999999999999988887743 4799999999998876543332221 23456
Q ss_pred eeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 370 PLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 370 ~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+...|+.+++.. .+||+|+++=-.-. ..+ ...+|+++.++|+|| |++++-
T Consensus 175 ~~~~~ie~lp~~-~~FD~V~s~gvL~H----~~d----p~~~L~el~r~LkpG-G~Lvle 224 (314)
T TIGR00452 175 LEPLGIEQLHEL-YAFDTVFSMGVLYH----RKS----PLEHLKQLKHQLVIK-GELVLE 224 (314)
T ss_pred EEECCHHHCCCC-CCcCEEEEcchhhc----cCC----HHHHHHHHHHhcCCC-CEEEEE
Confidence 788888888754 58999999532111 112 235777899999999 999874
No 143
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.89 E-value=1.5e-08 Score=100.76 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=79.0
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
.-+.+.+++.++..++..++..|||+|||+|.+...++... ..++|+|+|+.+++.++.++.. ..++.+++
T Consensus 11 fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~-------~~~v~v~~ 81 (253)
T TIGR00755 11 FLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL-------YERLEVIE 81 (253)
T ss_pred cCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc-------CCcEEEEE
Confidence 34788999999999998889999999999999999998875 4699999999999999988752 13468899
Q ss_pred eccccccCCCCCee---EEEEcCCCcc
Q psy19 373 CNVRQLCFKPACVD---GIVTDLPFGK 396 (494)
Q Consensus 373 ~Da~~l~~~~~~~D---~IVtNPPYG~ 396 (494)
+|+..+++. .+| .||+||||..
T Consensus 82 ~D~~~~~~~--~~d~~~~vvsNlPy~i 106 (253)
T TIGR00755 82 GDALKVDLP--DFPKQLKVVSNLPYNI 106 (253)
T ss_pred CchhcCChh--HcCCcceEEEcCChhh
Confidence 999988754 456 9999999974
No 144
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.89 E-value=2.4e-08 Score=96.29 Aligned_cols=96 Identities=15% Similarity=-0.003 Sum_probs=72.4
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeE
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG 387 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~ 387 (494)
...++.+|||+|||+|.++..++...++..++|+|+++.|++.|+.++. .+.+.++|+.+ ++++++||+
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----------~~~~~~~d~~~-~~~~~sfD~ 108 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----------NINIIQGSLFD-PFKDNFFDL 108 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----------CCcEEEeeccC-CCCCCCEEE
Confidence 3456778999999999999988877677899999999999999998753 13577889888 777789999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhccc
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVR 420 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLk 420 (494)
|+++--... + . .+....+++++.++++
T Consensus 109 V~~~~vL~h-l-~----p~~~~~~l~el~r~~~ 135 (204)
T TIGR03587 109 VLTKGVLIH-I-N----PDNLPTAYRELYRCSN 135 (204)
T ss_pred EEECChhhh-C-C----HHHHHHHHHHHHhhcC
Confidence 999643211 1 1 1224456667888763
No 145
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.86 E-value=2.4e-08 Score=96.66 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=88.4
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
.....|.+-+.|+.++.+++|++|||+|||||.+..-+|.. .+...|+++|+++..++.|++|+...+. .++.+
T Consensus 53 ~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-----~nv~~ 127 (209)
T PF01135_consen 53 QTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-----DNVEV 127 (209)
T ss_dssp EEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-----HSEEE
T ss_pred eechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-----CceeE
Confidence 44467888999999999999999999999999998777765 3445799999999999999999998765 35789
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
.++|....-...+.||.|+++.-.- . +.. .+.+.|++| |++++....
T Consensus 128 ~~gdg~~g~~~~apfD~I~v~~a~~-------~---ip~----~l~~qL~~g-GrLV~pi~~ 174 (209)
T PF01135_consen 128 VVGDGSEGWPEEAPFDRIIVTAAVP-------E---IPE----ALLEQLKPG-GRLVAPIGQ 174 (209)
T ss_dssp EES-GGGTTGGG-SEEEEEESSBBS-------S-----H----HHHHTEEEE-EEEEEEESS
T ss_pred EEcchhhccccCCCcCEEEEeeccc-------h---HHH----HHHHhcCCC-cEEEEEEcc
Confidence 9999876533346899999964221 1 122 366689999 999986654
No 146
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.86 E-value=2.9e-08 Score=102.16 Aligned_cols=107 Identities=18% Similarity=0.131 Sum_probs=78.9
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeE
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG 387 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~ 387 (494)
....|.+|||+|||+|.+++.++..++ ..|+|+|.++.++..++......+. ..++.+..+|+.++++ ++.||+
T Consensus 119 ~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~~----~~~i~~~~~d~e~lp~-~~~FD~ 192 (322)
T PRK15068 119 SPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLGN----DQRAHLLPLGIEQLPA-LKAFDT 192 (322)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcCC----CCCeEEEeCCHHHCCC-cCCcCE
Confidence 334678999999999999999988754 3699999999998766554443221 2357889999999987 578999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
|++.-= +....+ ...+++++.+.|+|| |++++-
T Consensus 193 V~s~~v----l~H~~d----p~~~L~~l~~~LkpG-G~lvl~ 225 (322)
T PRK15068 193 VFSMGV----LYHRRS----PLDHLKQLKDQLVPG-GELVLE 225 (322)
T ss_pred EEECCh----hhccCC----HHHHHHHHHHhcCCC-cEEEEE
Confidence 998411 111112 245777899999999 998763
No 147
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.86 E-value=1.4e-08 Score=109.69 Aligned_cols=113 Identities=16% Similarity=0.125 Sum_probs=84.0
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc--c
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ--L 378 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~--l 378 (494)
..++.+....++.+|||+|||+|.++..++.. ...++|+|+++.+++.++... + ....+.++++|+.. +
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~---~----~~~~i~~~~~d~~~~~~ 97 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESIN---G----HYKNVKFMCADVTSPDL 97 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHh---c----cCCceEEEEeccccccc
Confidence 34455555556789999999999999998876 468999999999998765422 1 12356789999863 4
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
++++++||+|+++.++..- .. .....+++++.++|+|| |.+++.
T Consensus 98 ~~~~~~fD~I~~~~~l~~l-~~-----~~~~~~l~~~~r~Lk~g-G~l~~~ 141 (475)
T PLN02336 98 NISDGSVDLIFSNWLLMYL-SD-----KEVENLAERMVKWLKVG-GYIFFR 141 (475)
T ss_pred CCCCCCEEEEehhhhHHhC-CH-----HHHHHHHHHHHHhcCCC-eEEEEE
Confidence 6666799999999876522 11 12356777899999999 988763
No 148
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3.9e-08 Score=94.35 Aligned_cols=119 Identities=18% Similarity=0.119 Sum_probs=94.1
Q ss_pred ccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 291 NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 291 ~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
+.+-..|.+.+.|+.+..++++++||++|||||..+.-.|.. ..+|+.+|+++...+.|++|++..|+ .++.+
T Consensus 52 gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~lg~-----~nV~v 124 (209)
T COG2518 52 GQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLETLGY-----ENVTV 124 (209)
T ss_pred CceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHcCC-----CceEE
Confidence 455577889999999999999999999999999988777777 45999999999999999999998875 23789
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
.++|...--...+.||.|+..= ... .. -. .+.+-|++| |++++...
T Consensus 125 ~~gDG~~G~~~~aPyD~I~Vta------aa~-~v---P~----~Ll~QL~~g-Grlv~PvG 170 (209)
T COG2518 125 RHGDGSKGWPEEAPYDRIIVTA------AAP-EV---PE----ALLDQLKPG-GRLVIPVG 170 (209)
T ss_pred EECCcccCCCCCCCcCEEEEee------ccC-CC---CH----HHHHhcccC-CEEEEEEc
Confidence 9999876522336899998831 111 11 11 356689999 99999877
No 149
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.84 E-value=2.9e-08 Score=96.82 Aligned_cols=124 Identities=19% Similarity=0.218 Sum_probs=93.1
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
..++.++.+..+.......++..|||+|||+|.+++.++.. +..++|+|+++.++..|++|+...+. .+.+.
T Consensus 29 ~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~ 100 (233)
T PRK05134 29 LHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGL------KIDYR 100 (233)
T ss_pred HHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC------ceEEE
Confidence 34566676777777666678889999999999999888775 57899999999999999999876542 34677
Q ss_pred eecccccc-CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 372 VCNVRQLC-FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 372 ~~Da~~l~-~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
..|+..++ ...+.||+|+++-.+.. . .+. ..+++.+.++|+|| |++++..+.
T Consensus 101 ~~~~~~~~~~~~~~fD~Ii~~~~l~~-~---~~~----~~~l~~~~~~L~~g-G~l~v~~~~ 153 (233)
T PRK05134 101 QTTAEELAAEHPGQFDVVTCMEMLEH-V---PDP----ASFVRACAKLVKPG-GLVFFSTLN 153 (233)
T ss_pred ecCHHHhhhhcCCCccEEEEhhHhhc-c---CCH----HHHHHHHHHHcCCC-cEEEEEecC
Confidence 78877664 23468999999654332 1 122 35667899999999 998876553
No 150
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.84 E-value=6.2e-08 Score=94.42 Aligned_cols=125 Identities=15% Similarity=0.123 Sum_probs=82.2
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCC----------
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNL---------- 362 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~---------- 362 (494)
...++.|+..+-.+ ...++.+|||||||.|.-++.+|.+ |..|+|+|+++.|++.+.. .+++..
T Consensus 20 ~~p~~~L~~~~~~~-~~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~ 93 (218)
T PRK13255 20 EEVNPLLQKYWPAL-ALPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEH 93 (218)
T ss_pred CCCCHHHHHHHHhh-CCCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHH---HcCCCccccccccccc
Confidence 34455555543322 2345679999999999999999987 7899999999999998742 122110
Q ss_pred CcccceeeeeeccccccCCC-CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 363 NRELKVSPLVCNVRQLCFKP-ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 363 ~~~~~i~~~~~Da~~l~~~~-~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
....++++.++|+++++... ..||.|+- +..-..-....-..+++.+.++|+|| |.+.+++
T Consensus 94 ~~~~~v~~~~~D~~~l~~~~~~~fd~v~D------~~~~~~l~~~~R~~~~~~l~~lL~pg-G~~~l~~ 155 (218)
T PRK13255 94 YQAGEITIYCGDFFALTAADLADVDAVYD------RAALIALPEEMRERYVQQLAALLPAG-CRGLLVT 155 (218)
T ss_pred cccCceEEEECcccCCCcccCCCeeEEEe------hHhHhhCCHHHHHHHHHHHHHHcCCC-CeEEEEE
Confidence 01346789999999885332 46888773 11000001233456777899999999 8755543
No 151
>KOG2187|consensus
Probab=98.83 E-value=2.1e-08 Score=106.27 Aligned_cols=125 Identities=17% Similarity=0.180 Sum_probs=93.3
Q ss_pred ccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 291 NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 291 ~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
..++..|.|-..+-.+++...+..++|.|||||+|++..|.. -..|+|+++++.+++-|+.|+..||+ .+.+|
T Consensus 363 ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~Ngi-----sNa~F 435 (534)
T KOG2187|consen 363 TNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGI-----SNATF 435 (534)
T ss_pred cCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCc-----cceee
Confidence 456677777777778888888999999999999999988876 57899999999999999999999986 34678
Q ss_pred eeeccccc-c--CC--CCCee-EEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 371 LVCNVRQL-C--FK--PACVD-GIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 371 ~~~Da~~l-~--~~--~~~~D-~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
+++-+.++ + +. -++-+ ++|.||| |.|.+. .+++.+.+.-.+ -++++++++..
T Consensus 436 i~gqaE~~~~sl~~~~~~~~~~v~iiDPp---R~Glh~-------~~ik~l~~~~~~--~rlvyvSCn~~ 493 (534)
T KOG2187|consen 436 IVGQAEDLFPSLLTPCCDSETLVAIIDPP---RKGLHM-------KVIKALRAYKNP--RRLVYVSCNPH 493 (534)
T ss_pred eecchhhccchhcccCCCCCceEEEECCC---cccccH-------HHHHHHHhccCc--cceEEEEcCHH
Confidence 88855544 1 11 12345 8999999 666541 334444444333 57888999875
No 152
>PLN02476 O-methyltransferase
Probab=98.83 E-value=3.4e-08 Score=99.34 Aligned_cols=118 Identities=13% Similarity=0.085 Sum_probs=95.6
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
+.+..++.|..++...+..+|||+|||+|..++.+|...+ +..++++|+++++++.|++|++.+|+ .++++++.+
T Consensus 102 v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl----~~~I~li~G 177 (278)
T PLN02476 102 VSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV----SHKVNVKHG 177 (278)
T ss_pred cCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEc
Confidence 4566677777777777788999999999999999887543 56899999999999999999998876 467899999
Q ss_pred ccccc-c-C----CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 374 NVRQL-C-F----KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 374 Da~~l-~-~----~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
|+.+. + + ..++||+|+.|.+- .-|..+++.+.++|+|| |.+++
T Consensus 178 dA~e~L~~l~~~~~~~~FD~VFIDa~K-----------~~Y~~y~e~~l~lL~~G-GvIV~ 226 (278)
T PLN02476 178 LAAESLKSMIQNGEGSSYDFAFVDADK-----------RMYQDYFELLLQLVRVG-GVIVM 226 (278)
T ss_pred CHHHHHHHHHhcccCCCCCEEEECCCH-----------HHHHHHHHHHHHhcCCC-cEEEE
Confidence 98774 2 2 13589999999761 23777888899999999 87764
No 153
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.83 E-value=1.1e-07 Score=95.37 Aligned_cols=116 Identities=15% Similarity=0.060 Sum_probs=84.1
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-cCCCCCeeEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-CFKPACVDGIV 389 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~~~~~~~D~IV 389 (494)
...+||++|||+|+++.+++...+...+.++|+|+.+++.|++++...+.. -...++++..+|+... ....++||+||
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~-~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGS-YDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccc-ccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345999999999999988876544568999999999999999988643210 1124567888898764 22236899999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+|+|..... ... -....|++.+.+.|+|| |.+++.+++
T Consensus 151 ~D~~~~~~~--~~~--l~~~ef~~~~~~~L~pg-G~lv~~~~~ 188 (270)
T TIGR00417 151 VDSTDPVGP--AET--LFTKEFYELLKKALNED-GIFVAQSES 188 (270)
T ss_pred EeCCCCCCc--ccc--hhHHHHHHHHHHHhCCC-cEEEEcCCC
Confidence 999865321 111 11356777899999999 998886554
No 154
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.80 E-value=4.1e-08 Score=96.10 Aligned_cols=118 Identities=18% Similarity=0.192 Sum_probs=97.9
Q ss_pred CEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--c-CCCCCeeEEE
Q psy19 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--C-FKPACVDGIV 389 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~-~~~~~~D~IV 389 (494)
..+||+|||.|.++++.|...|...++|+|+....+..|..-+...+++ ++.+++.|+..+ . +++++.|-|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-----Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-----NLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-----cEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 4899999999999999999999999999999999999999999988761 568999999877 2 3445999998
Q ss_pred EcCC--CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHH
Q psy19 390 TDLP--FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQ 438 (494)
Q Consensus 390 tNPP--YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~ 438 (494)
.|-| |.+.-.. .-+-++..|++.++++|+|| |.+.+-|.+..++..
T Consensus 125 i~FPDPWpKkRH~--KRRl~~~~fl~~~a~~Lk~g-G~l~~aTD~~~y~e~ 172 (227)
T COG0220 125 INFPDPWPKKRHH--KRRLTQPEFLKLYARKLKPG-GVLHFATDNEEYFEW 172 (227)
T ss_pred EECCCCCCCcccc--ccccCCHHHHHHHHHHccCC-CEEEEEecCHHHHHH
Confidence 8876 5433221 23446788999999999999 999999998877666
No 155
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.80 E-value=3.4e-08 Score=89.59 Aligned_cols=111 Identities=22% Similarity=0.253 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhC-CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecc
Q psy19 297 PTIAYNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV 375 (494)
Q Consensus 297 e~lAa~ll~la~-~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da 375 (494)
..++..+..+.. ..++.+|||+|||+|.++..++.. +.+++|+|+++.+++. . . +.....+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~-----~-~---------~~~~~~~~ 69 (161)
T PF13489_consen 7 RAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK-----R-N---------VVFDNFDA 69 (161)
T ss_dssp HCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH-----T-T---------SEEEEEEC
T ss_pred HHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh-----h-h---------hhhhhhhh
Confidence 344555555554 467889999999999999888776 5699999999999988 1 0 11222233
Q ss_pred ccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 376 RQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 376 ~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
...+.+++.||+|+++== +....+ ...++..+.++|+|| |.+++.++..
T Consensus 70 ~~~~~~~~~fD~i~~~~~----l~~~~d----~~~~l~~l~~~Lkpg-G~l~~~~~~~ 118 (161)
T PF13489_consen 70 QDPPFPDGSFDLIICNDV----LEHLPD----PEEFLKELSRLLKPG-GYLVISDPNR 118 (161)
T ss_dssp HTHHCHSSSEEEEEEESS----GGGSSH----HHHHHHHHHHCEEEE-EEEEEEEEBT
T ss_pred hhhhccccchhhHhhHHH----Hhhccc----HHHHHHHHHHhcCCC-CEEEEEEcCC
Confidence 333344579999999621 111112 457788999999999 9999988864
No 156
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.79 E-value=1.9e-08 Score=96.18 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=87.5
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC 379 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~ 379 (494)
|.-++.......-..|+|+|||+|.-.--.+.+||++.|+|+|.|+.|++.|+..+- +++|..+|+.++.
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp----------~~~f~~aDl~~w~ 88 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP----------DATFEEADLRTWK 88 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC----------CCceecccHhhcC
Confidence 444555666667789999999999988888999999999999999999999976554 3478999999985
Q ss_pred CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 380 FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 380 ~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
.. ...|++++|--+. .+. +..+ +|..+...|.|| |.+++-.|+
T Consensus 89 p~-~~~dllfaNAvlq-Wlp---dH~~----ll~rL~~~L~Pg-g~LAVQmPd 131 (257)
T COG4106 89 PE-QPTDLLFANAVLQ-WLP---DHPE----LLPRLVSQLAPG-GVLAVQMPD 131 (257)
T ss_pred CC-Cccchhhhhhhhh-hcc---ccHH----HHHHHHHhhCCC-ceEEEECCC
Confidence 43 5799999986543 222 2233 344688889999 999887774
No 157
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.78 E-value=1.1e-09 Score=92.52 Aligned_cols=99 Identities=16% Similarity=0.205 Sum_probs=59.4
Q ss_pred EEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcCCCc
Q psy19 316 LDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFG 395 (494)
Q Consensus 316 LDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG 395 (494)
||+|||+|.++..++..++..+++|+|+++.|++.|++.+...+.. ....+.+...|...... .++||+|++.--+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND--NFERLRFDVLDLFDYDP-PESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---CCC-----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc--ceeEEEeecCChhhccc-ccccceehhhhhHh
Confidence 7999999999999988888899999999999999999888865421 11122333333333222 25899999964332
Q ss_pred cccCCccchHHHHHHHHHHHhhcccCCCcEE
Q psy19 396 KRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA 426 (494)
Q Consensus 396 ~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~l 426 (494)
.- .+ ...+++.+.++|+|| |.+
T Consensus 78 ~l----~~----~~~~l~~~~~~L~pg-G~l 99 (99)
T PF08242_consen 78 HL----ED----IEAVLRNIYRLLKPG-GIL 99 (99)
T ss_dssp ------S-----HHHHHHHHTTT-TSS--EE
T ss_pred hh----hh----HHHHHHHHHHHcCCC-CCC
Confidence 11 23 346677899999999 874
No 158
>PRK01581 speE spermidine synthase; Validated
Probab=98.78 E-value=6.1e-08 Score=100.40 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=84.1
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCC-C-cccceeeeeeccccc-cCCCCCeeE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNL-N-RELKVSPLVCNVRQL-CFKPACVDG 387 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~-~-~~~~i~~~~~Da~~l-~~~~~~~D~ 387 (494)
...+||++|||+|..+.+++...+...|+++|+|+++++.|+..-.....+. . -..+++++.+|+... ....+.||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 3458999999999998888765445789999999999999996311110000 1 135788999999875 333468999
Q ss_pred EEEcCCCccccCCccchHHHH-HHHHHHHhhcccCCCcEEEEEecC
Q psy19 388 IVTDLPFGKRVGSKSNNFLLY-RLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly-~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
||+|+|-.... ....+| ..|++.+.+.|+|| |.+++-+..
T Consensus 230 IIvDl~DP~~~----~~~~LyT~EFy~~~~~~LkPg-GV~V~Qs~s 270 (374)
T PRK01581 230 IIIDFPDPATE----LLSTLYTSELFARIATFLTED-GAFVCQSNS 270 (374)
T ss_pred EEEcCCCcccc----chhhhhHHHHHHHHHHhcCCC-cEEEEecCC
Confidence 99998753221 134556 56888999999999 988776543
No 159
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.78 E-value=8.1e-08 Score=91.60 Aligned_cols=120 Identities=17% Similarity=0.162 Sum_probs=81.6
Q ss_pred ccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 291 NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 291 ~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
+..+..+.+..+ ...-++.++||++||.|.-++.+|.. |..|+++|+++.+++.+++-+...++ .++.
T Consensus 14 ~~~~~hs~v~~a----~~~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l------~i~~ 81 (192)
T PF03848_consen 14 GLTPTHSEVLEA----VPLLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGL------DIRT 81 (192)
T ss_dssp TB----HHHHHH----CTTS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-------TEEE
T ss_pred CCCCCcHHHHHH----HhhcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCc------eeEE
Confidence 344444444433 34445679999999999999999998 78999999999999999888876654 2678
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
...|+.+..++ ..||+|++---+. -+ .. +....+++.+...++|| |..++.+
T Consensus 82 ~~~Dl~~~~~~-~~yD~I~st~v~~-fL-~~----~~~~~i~~~m~~~~~pG-G~~li~~ 133 (192)
T PF03848_consen 82 RVADLNDFDFP-EEYDFIVSTVVFM-FL-QR----ELRPQIIENMKAATKPG-GYNLIVT 133 (192)
T ss_dssp EE-BGCCBS-T-TTEEEEEEESSGG-GS--G----GGHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred EEecchhcccc-CCcCEEEEEEEec-cC-CH----HHHHHHHHHHHhhcCCc-EEEEEEE
Confidence 88998887665 6899999742221 11 11 22456677899999999 9877754
No 160
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.77 E-value=5.1e-08 Score=104.89 Aligned_cols=119 Identities=16% Similarity=0.120 Sum_probs=92.3
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-CCCCCe
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-FKPACV 385 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~~~~~~ 385 (494)
.+++|++|||.|||.|+=...+|... ....+++.|+++.-+...++|++..|+ .++.+.+.|...+. ...+.|
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-----~nv~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-----SNVALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeCchhhhhhhchhhc
Confidence 67899999999999998888777653 336899999999999999999999875 23678888988763 223579
Q ss_pred eEEEEcCCC-ccccC--Cc-----------cchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 386 DGIVTDLPF-GKRVG--SK-----------SNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 386 D~IVtNPPY-G~r~~--~~-----------~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
|.|+.|+|= |..+- .. ..+..+-.++|..+.+.|||| |+++..|+.
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpG-G~LVYSTCT 244 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPG-GTLVYSTCT 244 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCC-cEEEEECCC
Confidence 999999993 22110 00 123455678999999999999 999998884
No 161
>KOG1270|consensus
Probab=98.77 E-value=2.6e-08 Score=97.87 Aligned_cols=110 Identities=18% Similarity=0.195 Sum_probs=80.9
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccC-CCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSG-NLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~-~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
-|..|||.|||+|-+.+.+|.. ++.|.|+|+.+.||+.|++.....-+ +.++.-++++...|+..+. +.||+||
T Consensus 89 ~g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVv 163 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVV 163 (282)
T ss_pred CCceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceee
Confidence 4678999999999999999998 78999999999999999998543221 1112234667777776653 4699999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
|--= +.. -.-...|+..+.++|+|+ |++++-|-++.
T Consensus 164 csev----leH----V~dp~~~l~~l~~~lkP~-G~lfittinrt 199 (282)
T KOG1270|consen 164 CSEV----LEH----VKDPQEFLNCLSALLKPN-GRLFITTINRT 199 (282)
T ss_pred eHHH----HHH----HhCHHHHHHHHHHHhCCC-CceEeeehhhh
Confidence 9211 100 111456888999999999 99999887765
No 162
>PRK06202 hypothetical protein; Provisional
Probab=98.77 E-value=5.9e-08 Score=94.90 Aligned_cols=97 Identities=15% Similarity=0.099 Sum_probs=70.5
Q ss_pred CCCCEEEEEcCCcChHHHHHHhc----CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCe
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLS----YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACV 385 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~----~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~ 385 (494)
.++.+|||+|||+|.++..++.. .++..++|+|+++.|++.|+.+....+ +.+...|+..++..+++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~--------~~~~~~~~~~l~~~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG--------VTFRQAVSDELVAEGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC--------CeEEEEecccccccCCCc
Confidence 56779999999999988776642 345689999999999999998865332 345566666665556799
Q ss_pred eEEEEcCCCccccCCccchHHHHHHHHHHHhhccc
Q psy19 386 DGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVR 420 (494)
Q Consensus 386 D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLk 420 (494)
|+|++|.-+.. +.. .-...+++++.++++
T Consensus 131 D~V~~~~~lhh-~~d-----~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 131 DVVTSNHFLHH-LDD-----AEVVRLLADSAALAR 159 (232)
T ss_pred cEEEECCeeec-CCh-----HHHHHHHHHHHHhcC
Confidence 99999864321 211 113467788999987
No 163
>KOG2730|consensus
Probab=98.75 E-value=9.5e-09 Score=98.26 Aligned_cols=105 Identities=16% Similarity=0.228 Sum_probs=84.6
Q ss_pred cccccccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCC
Q psy19 284 RRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLN 363 (494)
Q Consensus 284 ~Rgy~~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~ 363 (494)
+-+|.-.+|.+..+.+|....... ....|+|.|||.|+-.|..|+. +..|+++||||.-+..|+.|++.+|+
T Consensus 70 ~e~wfsvTpe~ia~~iA~~v~~~~---~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI--- 141 (263)
T KOG2730|consen 70 REGWFSVTPEKIAEHIANRVVACM---NAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGV--- 141 (263)
T ss_pred ccceEEeccHHHHHHHHHHHHHhc---CcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecC---
Confidence 334444567788888887776654 3458999999999999999988 56899999999999999999998876
Q ss_pred cccceeeeeeccccc----cCCCCCeeEEEEcCCCccc
Q psy19 364 RELKVSPLVCNVRQL----CFKPACVDGIVTDLPFGKR 397 (494)
Q Consensus 364 ~~~~i~~~~~Da~~l----~~~~~~~D~IVtNPPYG~r 397 (494)
.++|.|+++|+.++ .+....+|+|..-||||..
T Consensus 142 -~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppwggp 178 (263)
T KOG2730|consen 142 -PDRITFICGDFLDLASKLKADKIKYDCVFLSPPWGGP 178 (263)
T ss_pred -CceeEEEechHHHHHHHHhhhhheeeeeecCCCCCCc
Confidence 56899999999876 2333458899999999854
No 164
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.74 E-value=7.4e-08 Score=98.25 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=83.5
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
.+-...|+.|+.... ++..|||+|||||.....++...+ +..++|+|+++.|++.|++++..... ...+.+++
T Consensus 48 ~il~~~~~~ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p----~~~v~~i~ 121 (301)
T TIGR03438 48 AILERHADEIAAATG--AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP----QLEVHGIC 121 (301)
T ss_pred HHHHHHHHHHHHhhC--CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC----CceEEEEE
Confidence 344555666655543 567899999999999888776654 57899999999999999999875321 23466789
Q ss_pred eccccc-cCCCC----CeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 373 CNVRQL-CFKPA----CVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 373 ~Da~~l-~~~~~----~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+|+.+. ++... ...+++++-+++.- . .+--..+|+++.++|+|| |.+++-
T Consensus 122 gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~--~----~~e~~~~L~~i~~~L~pg-G~~lig 176 (301)
T TIGR03438 122 ADFTQPLALPPEPAAGRRLGFFPGSTIGNF--T----PEEAVAFLRRIRQLLGPG-GGLLIG 176 (301)
T ss_pred EcccchhhhhcccccCCeEEEEecccccCC--C----HHHHHHHHHHHHHhcCCC-CEEEEe
Confidence 998763 33322 23344444443321 1 111347888999999999 988763
No 165
>PLN02366 spermidine synthase
Probab=98.74 E-value=3e-07 Score=94.05 Aligned_cols=115 Identities=12% Similarity=0.052 Sum_probs=83.6
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-c-CCCCCeeE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-C-FKPACVDG 387 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~-~~~~~~D~ 387 (494)
....+||++|||.|+++.+++...+..+|..+|||+.+++.|++.+...+.. --..+++++.+|+... . .+.+.||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~-~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG-FDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc-cCCCceEEEEChHHHHHhhccCCCCCE
Confidence 3467899999999999999886533468999999999999999988643211 1134789999998765 1 22468999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
||+|.+-... . ...-....|++.+.+.|+|| |.++.-+
T Consensus 169 Ii~D~~dp~~--~--~~~L~t~ef~~~~~~~L~pg-Gvlv~q~ 206 (308)
T PLN02366 169 IIVDSSDPVG--P--AQELFEKPFFESVARALRPG-GVVCTQA 206 (308)
T ss_pred EEEcCCCCCC--c--hhhhhHHHHHHHHHHhcCCC-cEEEECc
Confidence 9999754321 1 11123456788999999999 9887643
No 166
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.73 E-value=1.3e-07 Score=91.44 Aligned_cols=123 Identities=17% Similarity=0.192 Sum_probs=88.6
Q ss_pred cchHHHHHHHHHHhC----CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccccee
Q psy19 294 TLKPTIAYNMVRLAS----PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369 (494)
Q Consensus 294 ~L~e~lAa~ll~la~----~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~ 369 (494)
.+.+.....+..... ...+.+|||+|||+|.++..++.. +..++|+|+++.+++.++.|+...+. ..+.
T Consensus 24 ~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~-----~~~~ 96 (224)
T TIGR01983 24 KMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPL-----LKIE 96 (224)
T ss_pred HhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCC-----CceE
Confidence 344544455544443 234779999999999999988775 46799999999999999999986543 1357
Q ss_pred eeeeccccccCC-CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 370 PLVCNVRQLCFK-PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 370 ~~~~Da~~l~~~-~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+...|+.+.+.. .++||+|+++-.+.. ..+ ...++..+.++|+|| |.+++.+.+
T Consensus 97 ~~~~d~~~~~~~~~~~~D~i~~~~~l~~----~~~----~~~~l~~~~~~L~~g-G~l~i~~~~ 151 (224)
T TIGR01983 97 YRCTSVEDLAEKGAKSFDVVTCMEVLEH----VPD----PQAFIRACAQLLKPG-GILFFSTIN 151 (224)
T ss_pred EEeCCHHHhhcCCCCCccEEEehhHHHh----CCC----HHHHHHHHHHhcCCC-cEEEEEecC
Confidence 788888777543 368999999654321 112 235677899999999 988876653
No 167
>PRK10742 putative methyltransferase; Provisional
Probab=98.72 E-value=3e-07 Score=90.63 Aligned_cols=97 Identities=7% Similarity=-0.063 Sum_probs=76.9
Q ss_pred HHHHHhCCCCCC--EEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCC----cccceeeeeecc
Q psy19 302 NMVRLASPIPGD--VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLN----RELKVSPLVCNV 375 (494)
Q Consensus 302 ~ll~la~~~~g~--~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~----~~~~i~~~~~Da 375 (494)
.|+..+++++|. +|||.++|+|..++++|.. |+.|+++|.++.+....+.|+..+..... +..+++++++|+
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 355566888887 9999999999999999998 78899999999999999999997521111 224678999998
Q ss_pred ccc-cCCCCCeeEEEEcCCCccccCC
Q psy19 376 RQL-CFKPACVDGIVTDLPFGKRVGS 400 (494)
Q Consensus 376 ~~l-~~~~~~~D~IVtNPPYG~r~~~ 400 (494)
..+ .-...+||+|..||||..+...
T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~~~ks 180 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMFPHKQKS 180 (250)
T ss_pred HHHHhhCCCCCcEEEECCCCCCCccc
Confidence 776 2112479999999999887644
No 168
>PRK03612 spermidine synthase; Provisional
Probab=98.67 E-value=1.2e-07 Score=103.66 Aligned_cols=115 Identities=16% Similarity=0.057 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHHHHhccCCC-Cc-ccceeeeeeccccc-cCCCCCe
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPH-TFFVCGDINEKLVLKTQANVLHNSGNL-NR-ELKVSPLVCNVRQL-CFKPACV 385 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~-~~v~G~Did~~al~~Ar~Nl~~~g~~~-~~-~~~i~~~~~Da~~l-~~~~~~~ 385 (494)
.+..+|||+|||+|.++.+++.. +. .+++++|+|+++++.|++|......+. .. ..+++++.+|+++. ....++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 35578999999999999998864 44 699999999999999999643221111 01 24688999999875 2223689
Q ss_pred eEEEEcCCCccccCCccchHHHH-HHHHHHHhhcccCCCcEEEEEe
Q psy19 386 DGIVTDLPFGKRVGSKSNNFLLY-RLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 386 D~IVtNPPYG~r~~~~~~~~~ly-~~fL~~l~rvLkpg~G~lvllt 430 (494)
|+||+|+|..... ....+| ..|++.+.+.|+|| |.+++-+
T Consensus 375 DvIi~D~~~~~~~----~~~~L~t~ef~~~~~~~L~pg-G~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNP----ALGKLYSVEFYRLLKRRLAPD-GLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCc----chhccchHHHHHHHHHhcCCC-eEEEEec
Confidence 9999999864321 112233 35777899999999 9987743
No 169
>KOG1271|consensus
Probab=98.66 E-value=2.3e-07 Score=86.64 Aligned_cols=137 Identities=14% Similarity=0.121 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhC---CCCC-CEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 297 PTIAYNMVRLAS---PIPG-DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 297 e~lAa~ll~la~---~~~g-~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
+.+...++.... +... .+|||+|||-|.++..++...-...+.|+|-++.|++.|+.-+++.+. .+.|.|.+
T Consensus 49 ~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~----~n~I~f~q 124 (227)
T KOG1271|consen 49 ERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF----SNEIRFQQ 124 (227)
T ss_pred HHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC----CcceeEEE
Confidence 344444444433 3333 389999999999999999874334699999999999999888887764 55689999
Q ss_pred eccccccCCCCCeeEEEEcCCCcc-ccC-Cccc-hHHHHHHHHHHHhhcccCCCcEEEEEecCHH--HHHHHHH
Q psy19 373 CNVRQLCFKPACVDGIVTDLPFGK-RVG-SKSN-NFLLYRLFLIEIGKIVRPQIGRAILLTSDRK--HLIQALH 441 (494)
Q Consensus 373 ~Da~~l~~~~~~~D~IVtNPPYG~-r~~-~~~~-~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~--~l~~~l~ 441 (494)
.|+++-.+..+.||+|+--=-|.. .+. .... -..+|-. .+.++|+|+ |+++|.+++.. .+.+.+.
T Consensus 125 ~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d---~v~~ll~~~-gifvItSCN~T~dELv~~f~ 194 (227)
T KOG1271|consen 125 LDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLD---SVEKLLSPG-GIFVITSCNFTKDELVEEFE 194 (227)
T ss_pred eeccCCcccccceeEEeecCceeeeecCCCCcccceeeehh---hHhhccCCC-cEEEEEecCccHHHHHHHHh
Confidence 999886555567777653221210 000 0001 1144655 466688899 99999999753 3444444
No 170
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.65 E-value=2.7e-07 Score=89.68 Aligned_cols=116 Identities=15% Similarity=0.122 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee-ec
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV-CN 374 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~-~D 374 (494)
+.....|..++...+..++|++|++.|.-++..|...| +.+++.+|+|++..+.|++|++.+|+ .+++.++. +|
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~----~~~i~~~~~gd 120 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV----DDRIELLLGGD 120 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC----cceEEEEecCc
Confidence 66666777788877888999999999998888887766 67999999999999999999998876 45577777 58
Q ss_pred cccc-c-CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 375 VRQL-C-FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 375 a~~l-~-~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+.+. . ...++||+|+.|= -...|..+++.+.++|+|| |.+++
T Consensus 121 al~~l~~~~~~~fDliFIDa-----------dK~~yp~~le~~~~lLr~G-Gliv~ 164 (219)
T COG4122 121 ALDVLSRLLDGSFDLVFIDA-----------DKADYPEYLERALPLLRPG-GLIVA 164 (219)
T ss_pred HHHHHHhccCCCccEEEEeC-----------ChhhCHHHHHHHHHHhCCC-cEEEE
Confidence 8765 2 2357999999862 1344889999999999999 87765
No 171
>COG1818 Predicted RNA-binding protein, contains THUMP domain [General function prediction only]
Probab=98.64 E-value=9.5e-08 Score=89.40 Aligned_cols=58 Identities=28% Similarity=0.293 Sum_probs=55.5
Q ss_pred EEEEEEEEecCcccChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEEEecCcceeccc
Q psy19 219 KFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLP 276 (494)
Q Consensus 219 tFrV~~~~~g~~~~~s~~~~~~v~~aI~d~~~~~vdl~~pdi~i~v~l~~~~~~l~l~ 276 (494)
||+|+|.+.|+|.|+|.+++-.+|+++.+..+..|||++||.-+++.+.++.+.+++-
T Consensus 95 tFaVr~~rRG~~~f~s~~~~v~vg~~v~~~tg~~VdL~~Pd~vv~Vevl~~~a~Isv~ 152 (175)
T COG1818 95 TFAVRTKRRGKHDFTSRDVEVVVGEAVKKATGAEVDLEDPDKVVWVEVLGDRAGISVL 152 (175)
T ss_pred eEEEEEeecCCCCccccceeehhHHHHHHHhCCcccCCCCCEEEEEEEecCcceEEEe
Confidence 8999999999999999999999999999988999999999999999999999998874
No 172
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.62 E-value=5.1e-07 Score=92.69 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=59.5
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
++.+|||+|||+|.+++.++.. +..|+|+|+++.|++.|++|+...+........+.+...|+..+ +++||+|++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 5789999999999999998876 67999999999999999999876532100112456777887654 368999998
Q ss_pred c
Q psy19 391 D 391 (494)
Q Consensus 391 N 391 (494)
.
T Consensus 219 ~ 219 (315)
T PLN02585 219 L 219 (315)
T ss_pred c
Confidence 5
No 173
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.60 E-value=4.7e-07 Score=87.76 Aligned_cols=96 Identities=16% Similarity=0.173 Sum_probs=68.7
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.++..|||+|||+|.++..++.. +..++|+|+++.+++.|++++...+. ..++.+..+|+. ..+++||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~---~~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGL----AGNITFEVGDLE---SLLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCC----ccCcEEEEcCch---hccCCcCEEE
Confidence 46789999999999999988876 56799999999999999999886543 245678888843 2346899999
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhccc
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVR 420 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLk 420 (494)
+.=.+.. .. ... ...+++.+.+.++
T Consensus 133 ~~~~l~~-~~-~~~----~~~~l~~l~~~~~ 157 (230)
T PRK07580 133 CLDVLIH-YP-QED----AARMLAHLASLTR 157 (230)
T ss_pred Ecchhhc-CC-HHH----HHHHHHHHHhhcC
Confidence 8543211 11 111 3345556666654
No 174
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.58 E-value=4.2e-07 Score=86.40 Aligned_cols=140 Identities=11% Similarity=0.084 Sum_probs=88.2
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
.-..+||||||.|.+...+|.+ ...++++|+++.|++.|++.+... ..|++.++|+... .+.+.||+||.
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~~-------~~V~~~~~dvp~~-~P~~~FDLIV~ 112 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAGL-------PHVEWIQADVPEF-WPEGRFDLIVL 112 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT----SS-EEEEEE
T ss_pred ccceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCCC-------CCeEEEECcCCCC-CCCCCeeEEEE
Confidence 3467999999999999999887 468999999999999999998732 3578999999775 34589999887
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH------------HHHHHHHHhccccceeeeeEEEcc-
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR------------KHLIQALHITSALWKCRKQIKINM- 457 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~------------~~l~~~l~~~~~l~~~~~~~~v~~- 457 (494)
-= -+..+... +-...++..+...|+|| |.+++-+... +.+.+.+.+. +.....+....
T Consensus 113 SE-VlYYL~~~----~~L~~~l~~l~~~L~pg-G~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~---~~~~~~~~~~~~ 183 (201)
T PF05401_consen 113 SE-VLYYLDDA----EDLRAALDRLVAALAPG-GHLVFGHARDANCRRWGHAAGAETVLEMLQEH---LTEVERVECRGG 183 (201)
T ss_dssp ES--GGGSSSH----HHHHHHHHHHHHTEEEE-EEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH---SEEEEEEEEE-S
T ss_pred eh-HhHcCCCH----HHHHHHHHHHHHHhCCC-CEEEEEEecCCcccccCcccchHHHHHHHHHH---hhheeEEEEcCC
Confidence 31 11222222 22456677899999999 9999876643 1223333321 23444444443
Q ss_pred -CCceEEEEEEee
Q psy19 458 -SGMKSFVFILNR 469 (494)
Q Consensus 458 -Ggl~~~i~v~~~ 469 (494)
-+-+|.+..|.+
T Consensus 184 ~~~~~~~~~~~~~ 196 (201)
T PF05401_consen 184 SPNEDCLLARFRN 196 (201)
T ss_dssp STTSEEEEEEEE-
T ss_pred CCCCceEeeeecC
Confidence 344677766654
No 175
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=7.6e-07 Score=92.94 Aligned_cols=122 Identities=20% Similarity=0.215 Sum_probs=90.8
Q ss_pred HHhCCCCCCEEEEEcCCcChHHHHHHhc--CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--C
Q psy19 305 RLASPIPGDVFLDPMCGGGTIPVECSLS--YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--F 380 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGSGtilIEAA~~--~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~ 380 (494)
.+..+++|++|||+|++-|+=...+|.. ..+..|+++|+++.-++..+.|++..|+. ++.+.+.|+..++ .
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-----nv~~~~~d~~~~~~~~ 224 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-----NVIVVNKDARRLAELL 224 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-----ceEEEecccccccccc
Confidence 4568899999999999999654444443 33456799999999999999999998862 2567888887663 1
Q ss_pred CC-CCeeEEEEcCCC---ccccCC--------c---cchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 381 KP-ACVDGIVTDLPF---GKRVGS--------K---SNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 381 ~~-~~~D~IVtNPPY---G~r~~~--------~---~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
.. ..||.|+.|+|= |..-.. . ..+..+-.++|..+.++|||| |.++..|+.
T Consensus 225 ~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~G-G~LVYSTCS 290 (355)
T COG0144 225 PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPG-GVLVYSTCS 290 (355)
T ss_pred cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEccC
Confidence 22 259999999993 211000 0 124566778999999999999 999998884
No 176
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.56 E-value=9e-07 Score=86.61 Aligned_cols=128 Identities=14% Similarity=0.068 Sum_probs=84.7
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHh------cc-CCCCcccc
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH------NS-GNLNRELK 367 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~------~g-~~~~~~~~ 367 (494)
.+|.|....-.+. ..++.+||+|+||.|.-++-+|.. |..|+|+|+++.||+.+.+.... .+ ...-....
T Consensus 28 pnp~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 104 (226)
T PRK13256 28 PNEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDD 104 (226)
T ss_pred CCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCc
Confidence 5666666554443 235679999999999999988887 78899999999999998662210 00 00001246
Q ss_pred eeeeeeccccccCC---CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 368 VSPLVCNVRQLCFK---PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 368 i~~~~~Da~~l~~~---~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+++.++|+++++.. .+.||+|+= ++.-..-..+++. +..+.+.++|+|| |++++++-+
T Consensus 105 i~~~~gD~f~l~~~~~~~~~fD~VyD---ra~~~Alpp~~R~---~Y~~~l~~lL~pg-g~llll~~~ 165 (226)
T PRK13256 105 IEIYVADIFNLPKIANNLPVFDIWYD---RGAYIALPNDLRT---NYAKMMLEVCSNN-TQILLLVME 165 (226)
T ss_pred eEEEEccCcCCCccccccCCcCeeee---ehhHhcCCHHHHH---HHHHHHHHHhCCC-cEEEEEEEe
Confidence 78999999998632 247888653 0111111223333 4455899999999 988887653
No 177
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.56 E-value=4.7e-07 Score=88.23 Aligned_cols=125 Identities=16% Similarity=0.143 Sum_probs=82.6
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHH-HHHhccCCC-C-----cccc
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA-NVLHNSGNL-N-----RELK 367 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~-Nl~~~g~~~-~-----~~~~ 367 (494)
..|.|...+-. ....++.+||+||||.|.-++.+|.. |..|+|+|+++.|++.|.+ |........ . ...+
T Consensus 22 ~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 98 (218)
T PF05724_consen 22 PNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR 98 (218)
T ss_dssp STHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred CCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence 44555554444 34457789999999999999999987 7899999999999999843 322111100 0 1246
Q ss_pred eeeeeeccccccCCC-CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 368 VSPLVCNVRQLCFKP-ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 368 i~~~~~Da~~l~~~~-~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
|++.++|++.++... ++||+|.= ++--.....+++.-|. +.+.++|+|| |++.++
T Consensus 99 i~~~~gDfF~l~~~~~g~fD~iyD---r~~l~Alpp~~R~~Ya---~~l~~ll~p~-g~~lLi 154 (218)
T PF05724_consen 99 ITIYCGDFFELPPEDVGKFDLIYD---RTFLCALPPEMRERYA---QQLASLLKPG-GRGLLI 154 (218)
T ss_dssp EEEEES-TTTGGGSCHHSEEEEEE---CSSTTTS-GGGHHHHH---HHHHHCEEEE-EEEEEE
T ss_pred eEEEEcccccCChhhcCCceEEEE---ecccccCCHHHHHHHH---HHHHHHhCCC-CcEEEE
Confidence 789999999986443 47999864 2222223345555565 4899999999 984444
No 178
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.55 E-value=4e-07 Score=87.90 Aligned_cols=118 Identities=13% Similarity=0.088 Sum_probs=89.0
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
+.+..++.|-.++.......||++|||+|.-++..|...| +++|+.+|++++..+.|++|++.+|+ .++|+++.+
T Consensus 29 i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~----~~~I~~~~g 104 (205)
T PF01596_consen 29 ISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL----DDRIEVIEG 104 (205)
T ss_dssp HHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG----GGGEEEEES
T ss_pred cCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC----CCcEEEEEe
Confidence 4455555555555544556999999999999998887654 68999999999999999999998875 578999999
Q ss_pred ccccc-c-C----CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 374 NVRQL-C-F----KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 374 Da~~l-~-~----~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
|+.+. + + ..+.||+|+.|=. +. -|..++..+.++|+|| |.+++
T Consensus 105 da~~~l~~l~~~~~~~~fD~VFiDa~-------K~----~y~~y~~~~~~ll~~g-gvii~ 153 (205)
T PF01596_consen 105 DALEVLPELANDGEEGQFDFVFIDAD-------KR----NYLEYFEKALPLLRPG-GVIIA 153 (205)
T ss_dssp -HHHHHHHHHHTTTTTSEEEEEEEST-------GG----GHHHHHHHHHHHEEEE-EEEEE
T ss_pred ccHhhHHHHHhccCCCceeEEEEccc-------cc----chhhHHHHHhhhccCC-eEEEE
Confidence 99764 2 1 1257999999842 22 2777777888999998 86654
No 179
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.55 E-value=5.2e-07 Score=97.84 Aligned_cols=59 Identities=37% Similarity=0.514 Sum_probs=53.9
Q ss_pred EEEEEEEEecCcccChHHHHHHHHHHHHhhc-CCCCCCCCCCEEEEEEEecCcceecccc
Q psy19 219 KFRVTCNRVGKHTVTSMESERAFGGKLNDTY-FWLVDLDDYDIDINLQIRYNEAYVGLPV 277 (494)
Q Consensus 219 tFrV~~~~~g~~~~~s~~~~~~v~~aI~d~~-~~~vdl~~pdi~i~v~l~~~~~~l~l~l 277 (494)
||+|+++|.++|.++|+++++.+|+.|.+.. +++||++|||++|++.+.++.++++...
T Consensus 106 tF~VrarR~~k~~~~S~ei~r~vG~~I~~~~~~~~VdL~nPD~~i~VeI~~d~~yv~~~~ 165 (482)
T PRK01269 106 TFCVRVKRRGKHDFTSIDVERYVGGGLNQHIESAGVDLKNPDVTVHLEIRDDRLYLVTER 165 (482)
T ss_pred eEEEEEEeCCCCCCChHHHHHHHHHHHHHhCCCCceeCCCCCEEEEEEEECCEEEEEEee
Confidence 8999999999889999999999999998665 5799999999999999999999887554
No 180
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.53 E-value=3.4e-06 Score=89.28 Aligned_cols=89 Identities=19% Similarity=0.271 Sum_probs=70.4
Q ss_pred EEEEEEEEecCc-ccChHHHHHHHHHHHHhhcC-CCCCCCCCCEEEEEEEecCcceeccccc----cccccccccc-ccc
Q psy19 219 KFRVTCNRVGKH-TVTSMESERAFGGKLNDTYF-WLVDLDDYDIDINLQIRYNEAYVGLPVT----QTSLHRRNIV-EFN 291 (494)
Q Consensus 219 tFrV~~~~~g~~-~~~s~~~~~~v~~aI~d~~~-~~vdl~~pdi~i~v~l~~~~~~l~l~ls----g~sL~~Rgy~-~~~ 291 (494)
||+|+|+|.|+| .|+|+++++.+|++|.+.++ ++|||+|||++|++.+.++.++++.... |-|+-.-+.. ..-
T Consensus 104 tF~Vr~rR~~k~f~~tS~ei~r~vG~~I~~~~~~~~VdL~nPd~~i~vei~~~~ayv~~~~~~g~GGlP~g~~gkvvvll 183 (394)
T PRK01565 104 TFKVEARRSDKSFPLDSMELNRELGAYILENFPNLKVDVKNPDVTLRVEVRKEAAYVYTEKIPGAGGLPVGTSGKALLLL 183 (394)
T ss_pred cEEEEEEECCCCCCCChHHHHHHHHHHHHhhCCCCcccccCCCeEEEEEEEcCeEEEEEEEEecCCCCccCCCCCEEEEE
Confidence 899999999977 89999999999999999886 8999999999999999999999887653 2233333331 122
Q ss_pred cccchHHHHHHHHHHh
Q psy19 292 ITTLKPTIAYNMVRLA 307 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la 307 (494)
...+..++|+.++...
T Consensus 184 SGGiDS~vaa~l~~k~ 199 (394)
T PRK01565 184 SGGIDSPVAGYLAMKR 199 (394)
T ss_pred CCChhHHHHHHHHHHC
Confidence 5567788887776543
No 181
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.51 E-value=8.3e-07 Score=96.80 Aligned_cols=123 Identities=14% Similarity=0.141 Sum_probs=96.8
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--cCCCCCeeEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKPACVDGI 388 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~~~~~~~D~I 388 (494)
.+..+||+|||.|.++++.|...|+..++|+|+....+..|.+.+...++ .++.++..|+..+ -++++++|.|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-----~N~~~~~~~~~~~~~~~~~~sv~~i 421 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-----TNFLLFPNNLDLILNDLPNNSLDGI 421 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-----CeEEEEcCCHHHHHHhcCcccccEE
Confidence 46789999999999999999999999999999999999998888876654 2456777777544 2566789999
Q ss_pred EEcCC--CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 389 VTDLP--FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 389 VtNPP--YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
..|-| |-+.-.. ..+-+...|+..+.++|+|| |.+.+.|.+..++...+.
T Consensus 422 ~i~FPDPWpKkrh~--krRl~~~~fl~~~~~~Lk~g-G~i~~~TD~~~y~~~~~~ 473 (506)
T PRK01544 422 YILFPDPWIKNKQK--KKRIFNKERLKILQDKLKDN-GNLVFASDIENYFYEAIE 473 (506)
T ss_pred EEECCCCCCCCCCc--cccccCHHHHHHHHHhcCCC-CEEEEEcCCHHHHHHHHH
Confidence 99877 5433222 22345678999999999999 999999988877665443
No 182
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=7e-07 Score=88.73 Aligned_cols=94 Identities=15% Similarity=0.158 Sum_probs=81.5
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
....++..++..+.+.+++.||++|+|.|.+..+++.. +..|+++|+|+.++...++.... ..+++++++|
T Consensus 14 ~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~-------~~n~~vi~~D 84 (259)
T COG0030 14 IDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAP-------YDNLTVINGD 84 (259)
T ss_pred cCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhccc-------ccceEEEeCc
Confidence 67788999999999999999999999999999999888 67899999999999999887752 2457899999
Q ss_pred cccccCCCC-CeeEEEEcCCCccc
Q psy19 375 VRQLCFKPA-CVDGIVTDLPFGKR 397 (494)
Q Consensus 375 a~~l~~~~~-~~D~IVtNPPYG~r 397 (494)
+...+++.- .++.||+|.||...
T Consensus 85 aLk~d~~~l~~~~~vVaNlPY~Is 108 (259)
T COG0030 85 ALKFDFPSLAQPYKVVANLPYNIS 108 (259)
T ss_pred hhcCcchhhcCCCEEEEcCCCccc
Confidence 999987632 68999999999854
No 183
>KOG1541|consensus
Probab=98.45 E-value=1.7e-06 Score=83.18 Aligned_cols=123 Identities=18% Similarity=0.280 Sum_probs=77.9
Q ss_pred chHHHHHHHHHHhCCCC--CCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 295 LKPTIAYNMVRLASPIP--GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~--g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
+...++..-+.+....+ ..-|||+|||||--+-.... ++...+|+||++.|++.|.+.-- .| .++.
T Consensus 32 IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~--~Gh~wiGvDiSpsML~~a~~~e~-eg---------dlil 99 (270)
T KOG1541|consen 32 IQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSD--SGHQWIGVDISPSMLEQAVEREL-EG---------DLIL 99 (270)
T ss_pred ehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheecc--CCceEEeecCCHHHHHHHHHhhh-hc---------Ceee
Confidence 34444444444443333 56799999999965544333 46889999999999999997221 12 4677
Q ss_pred ecccc-ccCCCCCeeEEEEcCC--C--ccccCCccchHHHHHHHHHHHhhcccCCCcEEEE-Eec
Q psy19 373 CNVRQ-LCFKPACVDGIVTDLP--F--GKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL-LTS 431 (494)
Q Consensus 373 ~Da~~-l~~~~~~~D~IVtNPP--Y--G~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl-lt~ 431 (494)
+|.-. +||++++||.+|+=-- | ......+..-..| ..|+..+...|++| +++++ +.+
T Consensus 100 ~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl-~~FF~tLy~~l~rg-~raV~QfYp 162 (270)
T KOG1541|consen 100 CDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRL-LRFFGTLYSCLKRG-ARAVLQFYP 162 (270)
T ss_pred eecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHH-HHHhhhhhhhhccC-ceeEEEecc
Confidence 78754 4888899998886110 0 0000111112233 36788899999999 99998 444
No 184
>KOG0820|consensus
Probab=98.45 E-value=1e-06 Score=87.08 Aligned_cols=95 Identities=22% Similarity=0.277 Sum_probs=81.1
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
.++.+++.|+.-|..++++.||+.|-|||.+....... +..|+++|+||.|+....+..... ..+.+.+++++|
T Consensus 42 kNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gt----p~~~kLqV~~gD 115 (315)
T KOG0820|consen 42 KNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGT----PKSGKLQVLHGD 115 (315)
T ss_pred cCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCC----CccceeeEEecc
Confidence 56888999999999999999999999999998766655 689999999999998888877632 345778999999
Q ss_pred cccccCCCCCeeEEEEcCCCccc
Q psy19 375 VRQLCFKPACVDGIVTDLPFGKR 397 (494)
Q Consensus 375 a~~l~~~~~~~D~IVtNPPYG~r 397 (494)
+...+++ .||.+|+|.||...
T Consensus 116 ~lK~d~P--~fd~cVsNlPyqIS 136 (315)
T KOG0820|consen 116 FLKTDLP--RFDGCVSNLPYQIS 136 (315)
T ss_pred cccCCCc--ccceeeccCCcccc
Confidence 9998764 69999999999754
No 185
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=98.44 E-value=1.3e-06 Score=95.23 Aligned_cols=134 Identities=12% Similarity=0.132 Sum_probs=88.8
Q ss_pred chHHHHHHHHHHhCC--CCCCEEEEEcCCcChHHHHHHhcCC----CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccce
Q psy19 295 LKPTIAYNMVRLASP--IPGDVFLDPMCGGGTIPVECSLSYP----HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKV 368 (494)
Q Consensus 295 L~e~lAa~ll~la~~--~~g~~VLDP~CGSGtilIEAA~~~~----~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i 368 (494)
+...++..|..+..+ .++..+.||+||||.+++++..... ...++|.++++.+...|++|+...+... +..
T Consensus 199 Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~---~t~ 275 (501)
T TIGR00497 199 TPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDY---ANF 275 (501)
T ss_pred CcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCc---ccc
Confidence 344556666666554 3678999999999999998654311 2468999999999999999998766421 122
Q ss_pred eeeeecccccc-C-CCCCeeEEEEcCCCccccCCc-------cch----------HHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 369 SPLVCNVRQLC-F-KPACVDGIVTDLPFGKRVGSK-------SNN----------FLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 369 ~~~~~Da~~l~-~-~~~~~D~IVtNPPYG~r~~~~-------~~~----------~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
.+..+|...-+ + ....||.|++||||+...... .+. ..-=..|+..+..+|++| |++.+|
T Consensus 276 ~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~g-G~~aiI 354 (501)
T TIGR00497 276 NIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQE-GTAAIV 354 (501)
T ss_pred CcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCC-CeEEEE
Confidence 33345544322 2 234699999999998643210 000 001124777788899998 998888
Q ss_pred ecC
Q psy19 430 TSD 432 (494)
Q Consensus 430 t~~ 432 (494)
.++
T Consensus 355 ~~~ 357 (501)
T TIGR00497 355 CFP 357 (501)
T ss_pred ecC
Confidence 774
No 186
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=98.42 E-value=5.4e-07 Score=86.37 Aligned_cols=61 Identities=21% Similarity=0.345 Sum_probs=48.9
Q ss_pred cccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q psy19 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~ 353 (494)
.+|++.+..|+..++.+.. .+|+.||||||||||.+++|... +.+.+|+|+++..++.|++
T Consensus 171 ~h~~~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 171 KHPTQKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp --TT-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred ceeecCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 4699999999999998876 47899999999999999999888 6789999999999999874
No 187
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.41 E-value=1.3e-06 Score=82.85 Aligned_cols=105 Identities=19% Similarity=0.140 Sum_probs=73.6
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--cCCCCCee
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKPACVD 386 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~~~~~~~D 386 (494)
+.+|.+|||+|||.|.++-.+... .++..+|+|+|++.+..|.++ | +.++++|+.+- .+++++||
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r----G--------v~Viq~Dld~gL~~f~d~sFD 77 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR----G--------VSVIQGDLDEGLADFPDQSFD 77 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc----C--------CCEEECCHHHhHhhCCCCCcc
Confidence 368999999999999998665543 578999999999988777653 3 26889998654 47789999
Q ss_pred EEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHH
Q psy19 387 GIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQ 438 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~ 438 (494)
.||++= .+..... -..+|+++.|+ | .++++..|+...+..
T Consensus 78 ~VIlsq----tLQ~~~~----P~~vL~EmlRV---g-r~~IVsFPNFg~W~~ 117 (193)
T PF07021_consen 78 YVILSQ----TLQAVRR----PDEVLEEMLRV---G-RRAIVSFPNFGHWRN 117 (193)
T ss_pred EEehHh----HHHhHhH----HHHHHHHHHHh---c-CeEEEEecChHHHHH
Confidence 999842 1211111 22455666665 4 667777787654443
No 188
>KOG2899|consensus
Probab=98.38 E-value=4.5e-06 Score=81.31 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=46.2
Q ss_pred hCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhc
Q psy19 307 ASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN 358 (494)
Q Consensus 307 a~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~ 358 (494)
..|..+.-+||+||-+|++.+..|..+....++|+|||+..|+.|++|++..
T Consensus 54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence 3466678899999999999999999887778999999999999999999753
No 189
>KOG4300|consensus
Probab=98.37 E-value=3.2e-06 Score=80.54 Aligned_cols=112 Identities=20% Similarity=0.182 Sum_probs=80.5
Q ss_pred HhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-CCCCC
Q psy19 306 LASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-FKPAC 384 (494)
Q Consensus 306 la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~~~~~ 384 (494)
+++......||+.|||||+---- .-.-|+..|+++|-++.|-+.|.+.+..+. ......++.++..++| +++++
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k----~~~~~~fvva~ge~l~~l~d~s 145 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKK----PLQVERFVVADGENLPQLADGS 145 (252)
T ss_pred HhcccCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhcc----CcceEEEEeechhcCcccccCC
Confidence 44444445699999999975321 112357899999999999999999888652 1222348899999997 77899
Q ss_pred eeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 385 VDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 385 ~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+|+||+- ++ +-+.++. .+.|.++.|+|||| |+++++-+
T Consensus 146 ~DtVV~T--lv--LCSve~~----~k~L~e~~rlLRpg-G~iifiEH 183 (252)
T KOG4300|consen 146 YDTVVCT--LV--LCSVEDP----VKQLNEVRRLLRPG-GRIIFIEH 183 (252)
T ss_pred eeeEEEE--EE--EeccCCH----HHHHHHHHHhcCCC-cEEEEEec
Confidence 9999983 22 2223332 35667899999999 99998754
No 190
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.35 E-value=1e-06 Score=89.45 Aligned_cols=91 Identities=18% Similarity=0.214 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecc
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV 375 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da 375 (494)
|.|...++....+.++..++|.+||.|+....++...+ ...|+|+|+|+.|++.|++++.. ..++.++++|+
T Consensus 5 pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-------~~ri~~i~~~f 77 (296)
T PRK00050 5 PVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-------FGRFTLVHGNF 77 (296)
T ss_pred cccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-------CCcEEEEeCCH
Confidence 45666677777778899999999999999999998864 57999999999999999988753 24678999999
Q ss_pred cccc--CCCC--CeeEEEEcCCC
Q psy19 376 RQLC--FKPA--CVDGIVTDLPF 394 (494)
Q Consensus 376 ~~l~--~~~~--~~D~IVtNPPY 394 (494)
.++. +..+ ++|.|++|+=+
T Consensus 78 ~~l~~~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 78 SNLKEVLAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHHHHHHHcCCCccCEEEECCCc
Confidence 8763 2212 79999998755
No 191
>PRK11524 putative methyltransferase; Provisional
Probab=98.35 E-value=1.2e-06 Score=88.74 Aligned_cols=65 Identities=22% Similarity=0.224 Sum_probs=59.0
Q ss_pred cccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHh
Q psy19 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH 357 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~ 357 (494)
.+|+..+..|...++.+.. .+|+.||||||||||.++.|... +.+.+|+|++++.++.|+..+..
T Consensus 188 ~HPt~kP~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 188 NHPTQKPEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred cCcccChHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 4799999999999998876 58899999999999999999888 77899999999999999998863
No 192
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.33 E-value=3.3e-06 Score=80.35 Aligned_cols=99 Identities=20% Similarity=0.198 Sum_probs=68.0
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc-c-cCCCCCeeE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ-L-CFKPACVDG 387 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~-l-~~~~~~~D~ 387 (494)
.++.+|||+|||+|.++..++... +..++|+|+++.+++.|+.+ + +.++++|+.+ + ++++++||+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~----~--------~~~~~~d~~~~l~~~~~~sfD~ 78 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR----G--------VNVIQGDLDEGLEAFPDKSFDY 78 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc----C--------CeEEEEEhhhcccccCCCCcCE
Confidence 367799999999999988776543 46789999999999888642 1 3577888865 3 355678999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
|+++.++.. +. +. ..+++++.+++ +.+++..++.
T Consensus 79 Vi~~~~l~~-~~---d~----~~~l~e~~r~~----~~~ii~~p~~ 112 (194)
T TIGR02081 79 VILSQTLQA-TR---NP----EEILDEMLRVG----RHAIVSFPNF 112 (194)
T ss_pred EEEhhHhHc-Cc---CH----HHHHHHHHHhC----CeEEEEcCCh
Confidence 999987642 21 22 23455666554 4444444554
No 193
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.31 E-value=4.2e-06 Score=84.78 Aligned_cols=121 Identities=21% Similarity=0.253 Sum_probs=91.9
Q ss_pred HhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--CCC
Q psy19 306 LASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--FKP 382 (494)
Q Consensus 306 la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~~~ 382 (494)
+..+.+|..|||.|+|.|+=...+|.... ...+++.|+++.-+...+.|++..|+ ..+.+...|+.... ...
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-----~~v~~~~~D~~~~~~~~~~ 154 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-----FNVIVINADARKLDPKKPE 154 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT------SSEEEEESHHHHHHHHHHT
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-----ceEEEEeeccccccccccc
Confidence 45778999999999999988777665533 57999999999999999999999875 23556668888772 222
Q ss_pred CCeeEEEEcCCC-cccc-CCc------------cchHHHHHHHHHHHhhcc----cCCCcEEEEEecC
Q psy19 383 ACVDGIVTDLPF-GKRV-GSK------------SNNFLLYRLFLIEIGKIV----RPQIGRAILLTSD 432 (494)
Q Consensus 383 ~~~D~IVtNPPY-G~r~-~~~------------~~~~~ly~~fL~~l~rvL----kpg~G~lvllt~~ 432 (494)
..||.|+.|+|= |... ... ..+..+-.++|..+.+++ +|| |+++..|+.
T Consensus 155 ~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~g-G~lvYsTCS 221 (283)
T PF01189_consen 155 SKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPG-GRLVYSTCS 221 (283)
T ss_dssp TTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEE-EEEEEEESH
T ss_pred cccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCC-CeEEEEecc
Confidence 469999999993 2211 101 124456667899999999 999 999999983
No 194
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.31 E-value=4.5e-06 Score=89.62 Aligned_cols=103 Identities=23% Similarity=0.249 Sum_probs=72.4
Q ss_pred CCEEEEEcCCcChHHHHHHhcC----CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeE
Q psy19 312 GDVFLDPMCGGGTIPVECSLSY----PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG 387 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~----~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~ 387 (494)
+.+|+|.|||+|-+...++... ...+|+++|.++.|+...+..+..++. .++|+++++|++++..+ ..+|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w----~~~V~vi~~d~r~v~lp-ekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW----GDKVTVIHGDMREVELP-EKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT----TTTEEEEES-TTTSCHS-S-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC----CCeEEEEeCcccCCCCC-CceeE
Confidence 5789999999999987766552 236899999999999887776666653 56799999999999765 58999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEE
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA 426 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~l 426 (494)
||+-+ .| .++..+ +-...|....++|||+ |.+
T Consensus 262 IVSEl-LG-sfg~nE----l~pE~Lda~~rfLkp~-Gi~ 293 (448)
T PF05185_consen 262 IVSEL-LG-SFGDNE----LSPECLDAADRFLKPD-GIM 293 (448)
T ss_dssp EEE----B-TTBTTT----SHHHHHHHGGGGEEEE-EEE
T ss_pred EEEec-cC-Cccccc----cCHHHHHHHHhhcCCC-CEE
Confidence 99965 23 223222 3345566788999998 643
No 195
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.30 E-value=5.4e-06 Score=82.31 Aligned_cols=116 Identities=12% Similarity=-0.039 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecc
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV 375 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da 375 (494)
+..++.|..++...+...||++|+++|.-++..|... ++.+++.+|+++...+.|+.|++.+|+ .++|+++.+|+
T Consensus 65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~----~~~I~~~~G~a 140 (247)
T PLN02589 65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV----AHKIDFREGPA 140 (247)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCceEEEeccH
Confidence 4555666666665566789999999998877776543 467999999999999999999998875 56789999998
Q ss_pred ccc-c-CC-----CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 376 RQL-C-FK-----PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 376 ~~l-~-~~-----~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
.+. + +. .++||+|+.|= ....|...++.+.++|+|| |.+++
T Consensus 141 ~e~L~~l~~~~~~~~~fD~iFiDa-----------dK~~Y~~y~~~~l~ll~~G-Gviv~ 188 (247)
T PLN02589 141 LPVLDQMIEDGKYHGTFDFIFVDA-----------DKDNYINYHKRLIDLVKVG-GVIGY 188 (247)
T ss_pred HHHHHHHHhccccCCcccEEEecC-----------CHHHhHHHHHHHHHhcCCC-eEEEE
Confidence 775 2 11 25899999972 1344778888889999999 87654
No 196
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=98.28 E-value=4.5e-06 Score=87.05 Aligned_cols=103 Identities=22% Similarity=0.291 Sum_probs=72.6
Q ss_pred EEEEEEEEecC-cccChHHHHHHHHHHHHhhc-CCCCCCCCCCEEEEEEEecCcceecccccc----ccccccccc-ccc
Q psy19 219 KFRVTCNRVGK-HTVTSMESERAFGGKLNDTY-FWLVDLDDYDIDINLQIRYNEAYVGLPVTQ----TSLHRRNIV-EFN 291 (494)
Q Consensus 219 tFrV~~~~~g~-~~~~s~~~~~~v~~aI~d~~-~~~vdl~~pdi~i~v~l~~~~~~l~l~lsg----~sL~~Rgy~-~~~ 291 (494)
||+|+|+|.++ |.|+|.++++.+|++|.+.+ .+.||+++||++|++.+.++.++++..... -|+---|.- ..-
T Consensus 103 tF~V~arR~~k~f~~~S~ev~~~vG~~i~~~~~~~~Vdl~~Pdv~i~iEIr~~~ayi~~~~~~G~GGLPvGt~Gk~l~Ll 182 (383)
T COG0301 103 TFKVRARRAGKEFPFTSLEVNRYVGEAILENIESAGVDLKNPDVEIHIEIREDKAYIYTERIKGPGGLPVGTQGKVLLLL 182 (383)
T ss_pred eEEEEEEeCCCCCCCCHHHHHHHHHHHHHhhcccceeecCCCCeEEEEEEecCeEEEEEeeeccCCCCccccCCcEEEEE
Confidence 99999999997 99999999999999999985 579999999999999999999998766532 122222221 112
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChH
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTI 325 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGti 325 (494)
...+..-+|+.|+. +.|..|-=++|.++..
T Consensus 183 SGGIDSPVA~~l~m----kRG~~v~~v~f~~~p~ 212 (383)
T COG0301 183 SGGIDSPVAAWLMM----KRGVEVIPVHFGNPPY 212 (383)
T ss_pred eCCCChHHHHHHHH----hcCCEEEEEEEcCCCC
Confidence 33455555555444 2444555555544433
No 197
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.28 E-value=3.7e-06 Score=78.98 Aligned_cols=122 Identities=17% Similarity=0.227 Sum_probs=74.3
Q ss_pred HHHHHHHHHHh------CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 297 PTIAYNMVRLA------SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 297 e~lAa~ll~la------~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
..||..|.... ....+.+||++|||+|..++.+|.......|+..|.++ .+...+.|++.++. .....+.+
T Consensus 25 ~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~--~~~~~v~v 101 (173)
T PF10294_consen 25 LVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS--LLDGRVSV 101 (173)
T ss_dssp HHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT----------EE
T ss_pred HHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc--cccccccC
Confidence 35566666642 34577899999999999999998885567999999999 99999999998762 12344556
Q ss_pred eeeccccc---c-CCCCCeeEEEE-cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 371 LVCNVRQL---C-FKPACVDGIVT-DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 371 ~~~Da~~l---~-~~~~~~D~IVt-NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
...|+.+- + .....||+||. |-=|. ..++..++.-+.++|+++ |.+++...
T Consensus 102 ~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~---------~~~~~~L~~tl~~ll~~~-~~vl~~~~ 157 (173)
T PF10294_consen 102 RPLDWGDELDSDLLEPHSFDVILASDVLYD---------EELFEPLVRTLKRLLKPN-GKVLLAYK 157 (173)
T ss_dssp EE--TTS-HHHHHHS-SSBSEEEEES--S----------GGGHHHHHHHHHHHBTT--TTEEEEEE
T ss_pred cEEEecCcccccccccccCCEEEEecccch---------HHHHHHHHHHHHHHhCCC-CEEEEEeC
Confidence 55555331 1 23358998875 44342 234667777899999998 76555444
No 198
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=98.28 E-value=3.7e-06 Score=88.32 Aligned_cols=90 Identities=22% Similarity=0.297 Sum_probs=70.3
Q ss_pred EEEEEEEEecC-cccChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEEEecCcceeccccc----cccccccccc-cccc
Q psy19 219 KFRVTCNRVGK-HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVT----QTSLHRRNIV-EFNI 292 (494)
Q Consensus 219 tFrV~~~~~g~-~~~~s~~~~~~v~~aI~d~~~~~vdl~~pdi~i~v~l~~~~~~l~l~ls----g~sL~~Rgy~-~~~~ 292 (494)
||+|+|+|.++ |.|+|+++++.+|++|.+.++++||++|||++|+|.+.++.++++.... |-|+---|.. ..-.
T Consensus 109 tF~V~~rR~~k~f~~tS~ei~~~vG~~i~~~~~~~Vdl~~Pd~~i~vEir~~~ayv~~~~~~G~GGLPvGs~gkvlvllS 188 (381)
T PRK08384 109 RFRVTARRITKEFPLKSPEIQAKVGEYILENEESEVDLHNYDIEVGVELMEGKAYVFVDKVKAWGGLPIGTQGKVVALLS 188 (381)
T ss_pred eEEEEEEeCCCCCCCChHHHHHHHHHHHHhcCCCCccCcCCCEEEEEEEEeCeEEEEEEEeecCCCCccCCCCcEEEEEe
Confidence 89999999995 7999999999999999988889999999999999999999999886653 1233333331 1224
Q ss_pred ccchHHHHHHHHHHhC
Q psy19 293 TTLKPTIAYNMVRLAS 308 (494)
Q Consensus 293 a~L~e~lAa~ll~la~ 308 (494)
......+|+.|+.-.+
T Consensus 189 GGiDSpVAa~ll~krG 204 (381)
T PRK08384 189 GGIDSPVAAFLMMKRG 204 (381)
T ss_pred CChHHHHHHHHHHHcC
Confidence 5577777777766543
No 199
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.25 E-value=1.1e-05 Score=80.71 Aligned_cols=93 Identities=17% Similarity=0.172 Sum_probs=78.9
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
-.++.++..++..+++.++..|+|+|+|.|.+..+.+.. +..++++|+|+..++..+..... ..+++++++
T Consensus 13 L~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~--~~~v~~vE~d~~~~~~L~~~~~~-------~~~~~vi~~ 83 (262)
T PF00398_consen 13 LVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR--GKRVIAVEIDPDLAKHLKERFAS-------NPNVEVING 83 (262)
T ss_dssp EEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH--SSEEEEEESSHHHHHHHHHHCTT-------CSSEEEEES
T ss_pred eCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc--cCcceeecCcHhHHHHHHHHhhh-------cccceeeec
Confidence 368999999999999999999999999999999999887 47999999999999998886652 245789999
Q ss_pred ccccccCCC---CCeeEEEEcCCCc
Q psy19 374 NVRQLCFKP---ACVDGIVTDLPFG 395 (494)
Q Consensus 374 Da~~l~~~~---~~~D~IVtNPPYG 395 (494)
|+.++.... .....||+|+||.
T Consensus 84 D~l~~~~~~~~~~~~~~vv~NlPy~ 108 (262)
T PF00398_consen 84 DFLKWDLYDLLKNQPLLVVGNLPYN 108 (262)
T ss_dssp -TTTSCGGGHCSSSEEEEEEEETGT
T ss_pred chhccccHHhhcCCceEEEEEeccc
Confidence 999986543 4678999999994
No 200
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.25 E-value=4.4e-06 Score=84.76 Aligned_cols=80 Identities=23% Similarity=0.130 Sum_probs=47.9
Q ss_pred CCEEEEEcCCcChH-HHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhc-cCCCCcccceeeeeec----cccc-cCCCCC
Q psy19 312 GDVFLDPMCGGGTI-PVECSLSYPHTFFVCGDINEKLVLKTQANVLHN-SGNLNRELKVSPLVCN----VRQL-CFKPAC 384 (494)
Q Consensus 312 g~~VLDP~CGSGti-lIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~-g~~~~~~~~i~~~~~D----a~~l-~~~~~~ 384 (494)
..++||+|||.-.| ++-++..+ +-.++|.|||+.+++.|++|+..+ ++ ..+|.++... ++.. ......
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L----~~~I~l~~~~~~~~i~~~i~~~~e~ 177 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNL----ESRIELRKQKNPDNIFDGIIQPNER 177 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-----TTTEEEEE--ST-SSTTTSTT--S-
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhcccc----ccceEEEEcCCccccchhhhcccce
Confidence 45799999999877 44445443 678999999999999999999988 54 5566766542 2221 112358
Q ss_pred eeEEEEcCCCcc
Q psy19 385 VDGIVTDLPFGK 396 (494)
Q Consensus 385 ~D~IVtNPPYG~ 396 (494)
||+.+|||||..
T Consensus 178 ~dftmCNPPFy~ 189 (299)
T PF05971_consen 178 FDFTMCNPPFYS 189 (299)
T ss_dssp EEEEEE-----S
T ss_pred eeEEecCCcccc
Confidence 999999999843
No 201
>PLN02823 spermine synthase
Probab=98.24 E-value=2.4e-05 Score=81.10 Aligned_cols=114 Identities=17% Similarity=0.131 Sum_probs=82.3
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-cCCCCCeeEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-CFKPACVDGIV 389 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~~~~~~~D~IV 389 (494)
....||-+|+|.|+++.+++...+...+..+|||+.+++.|++++...+.. --..+++++.+|++.. ....++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~-~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREA-FCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccc-ccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 345899999999999999887655568999999999999999998643210 1135789999999876 32346899999
Q ss_pred EcCCCccccCCccchHHHH-HHHHH-HHhhcccCCCcEEEEE
Q psy19 390 TDLPFGKRVGSKSNNFLLY-RLFLI-EIGKIVRPQIGRAILL 429 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly-~~fL~-~l~rvLkpg~G~lvll 429 (494)
.|.+-....+. ...|| ..|++ .+.+.|+|| |.+++-
T Consensus 182 ~D~~dp~~~~~---~~~Lyt~eF~~~~~~~~L~p~-Gvlv~q 219 (336)
T PLN02823 182 GDLADPVEGGP---CYQLYTKSFYERIVKPKLNPG-GIFVTQ 219 (336)
T ss_pred ecCCCccccCc---chhhccHHHHHHHHHHhcCCC-cEEEEe
Confidence 99742211111 12234 35676 788999999 987654
No 202
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=98.23 E-value=7.7e-06 Score=85.94 Aligned_cols=90 Identities=22% Similarity=0.294 Sum_probs=69.9
Q ss_pred EEEEEEEEecC-cccChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEEEecCcceecccccc----ccccccccc-cccc
Q psy19 219 KFRVTCNRVGK-HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQ----TSLHRRNIV-EFNI 292 (494)
Q Consensus 219 tFrV~~~~~g~-~~~~s~~~~~~v~~aI~d~~~~~vdl~~pdi~i~v~l~~~~~~l~l~lsg----~sL~~Rgy~-~~~~ 292 (494)
||+|+|+|.|+ ..++|+++++.+|.+|.+.++++|||+|||++|+|.+.++.++++..... -|+-.-+.. ..-.
T Consensus 101 tF~Vr~kR~~k~f~~~S~ei~r~~G~~i~~~~~~~VdL~nPd~~i~vei~~~~ayi~~~~~~g~gGlP~g~~~kvlvllS 180 (371)
T TIGR00342 101 TFKVRTKRRGKDFPLNSVEVNKYVGGGIVEKIGLKVDLTNPDITVHIEIREDEFLIITERYEGIGGLPVGTQGKVLALLS 180 (371)
T ss_pred cEEEEEEECCCCCCCChHHHHHHHHHHHHHHcCCcccccCCCEEEEEEEECCEEEEEEEeEecCCCcCcCcCCeEEEEec
Confidence 89999999984 45779999999999999998899999999999999999999999866542 233333331 2234
Q ss_pred ccchHHHHHHHHHHhC
Q psy19 293 TTLKPTIAYNMVRLAS 308 (494)
Q Consensus 293 a~L~e~lAa~ll~la~ 308 (494)
..+...+|+.++...+
T Consensus 181 GGiDS~vaa~ll~krG 196 (371)
T TIGR00342 181 GGIDSPVAAFMMMKRG 196 (371)
T ss_pred CCchHHHHHHHHHHcC
Confidence 5677777777775543
No 203
>KOG1499|consensus
Probab=98.23 E-value=4.7e-06 Score=85.23 Aligned_cols=99 Identities=21% Similarity=0.223 Sum_probs=77.3
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
.+.+|||.|||||-+.+.+|+.+ ..+|+|+|.+.-+ +.|++.+..|++ .+.++++++.+.++.+|...+|+||+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~----~~ii~vi~gkvEdi~LP~eKVDiIvS 133 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGL----EDVITVIKGKVEDIELPVEKVDIIVS 133 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCc----cceEEEeecceEEEecCccceeEEee
Confidence 67899999999999999999986 4689999998877 999999998875 56789999988887666679999999
Q ss_pred cCCCccccCCccchHHHHHHHHHHH----hhcccCCCcE
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEI----GKIVRPQIGR 425 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l----~rvLkpg~G~ 425 (494)
. .+|. ..||..+|..+ -+.|+|| |.
T Consensus 134 E-----WMGy----~Ll~EsMldsVl~ARdkwL~~~-G~ 162 (346)
T KOG1499|consen 134 E-----WMGY----FLLYESMLDSVLYARDKWLKEG-GL 162 (346)
T ss_pred h-----hhhH----HHHHhhhhhhhhhhhhhccCCC-ce
Confidence 3 4443 23444444433 3478888 63
No 204
>PRK13699 putative methylase; Provisional
Probab=98.21 E-value=4.3e-06 Score=82.01 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=57.5
Q ss_pred cccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhc
Q psy19 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN 358 (494)
Q Consensus 290 ~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~ 358 (494)
.+|++.+..|...++.... .+|+.||||||||||.+++|... +...+|+|+++..++.|.+.+...
T Consensus 143 ~hp~~kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 143 HHPTEKPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCCcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 4689999999998887654 47889999999999999998887 678999999999999999888753
No 205
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.18 E-value=6.3e-06 Score=76.32 Aligned_cols=81 Identities=12% Similarity=0.129 Sum_probs=61.0
Q ss_pred EEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhc
Q psy19 339 VCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKI 418 (494)
Q Consensus 339 ~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rv 418 (494)
+|+|+++.|++.|+++....+. +...+++++++|+.++|+++++||+|++. |+.+.- .+ ...+++++.|+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~--~~~~~i~~~~~d~~~lp~~~~~fD~v~~~--~~l~~~--~d----~~~~l~ei~rv 70 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR--SCYKCIEWIEGDAIDLPFDDCEFDAVTMG--YGLRNV--VD----RLRAMKEMYRV 70 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc--cCCCceEEEEechhhCCCCCCCeeEEEec--chhhcC--CC----HHHHHHHHHHH
Confidence 4899999999999887653321 11235789999999999888899999984 444321 12 34677799999
Q ss_pred ccCCCcEEEEEe
Q psy19 419 VRPQIGRAILLT 430 (494)
Q Consensus 419 Lkpg~G~lvllt 430 (494)
|||| |+++++.
T Consensus 71 LkpG-G~l~i~d 81 (160)
T PLN02232 71 LKPG-SRVSILD 81 (160)
T ss_pred cCcC-eEEEEEE
Confidence 9999 9998763
No 206
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.14 E-value=2.7e-05 Score=76.45 Aligned_cols=108 Identities=12% Similarity=0.063 Sum_probs=79.3
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
..++....+.+...|+|+|+|+|.++++++..+|+.+++..|+ |..++.+++ .+++++..+|++ -++
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----------~~rv~~~~gd~f-~~~ 156 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----------ADRVEFVPGDFF-DPL 156 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----------TTTEEEEES-TT-TCC
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----------ccccccccccHH-hhh
Confidence 4455566777778999999999999999999999999999999 888888888 245789999998 455
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCC-CcEEEEE
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQ-IGRAILL 429 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg-~G~lvll 429 (494)
+. +|+++.- ++ -+.-..+--..+|+.+.+.|+|| .|+++|+
T Consensus 157 P~--~D~~~l~-----~v-Lh~~~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 157 PV--ADVYLLR-----HV-LHDWSDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp SS--ESEEEEE-----SS-GGGS-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred cc--ccceeee-----hh-hhhcchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 53 9998872 22 11112233456778899999974 3887774
No 207
>KOG1500|consensus
Probab=98.08 E-value=2.5e-05 Score=79.20 Aligned_cols=113 Identities=14% Similarity=0.195 Sum_probs=81.9
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
++++.-..--.+.+|||.|||||.+..-||+.+. .+|++++.+. |.+.|+.-+..++ +.++|.++.+-+.++.+
T Consensus 167 ~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~-MAqyA~~Lv~~N~----~~~rItVI~GKiEdieL 240 (517)
T KOG1500|consen 167 RAILENHSDFQDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASE-MAQYARKLVASNN----LADRITVIPGKIEDIEL 240 (517)
T ss_pred HHHHhcccccCCcEEEEecCCccHHHHHHHHhCc-ceEEEEehhH-HHHHHHHHHhcCC----ccceEEEccCccccccC
Confidence 3344333334678999999999999999988753 6899999865 5688888877664 46788999999999887
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEE
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAI 427 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lv 427 (494)
+ +..|+||+.| .|..+-. +.+.+-|- .+.++|+|. |.++
T Consensus 241 P-Ek~DviISEP-MG~mL~N-ERMLEsYl----~Ark~l~P~-GkMf 279 (517)
T KOG1500|consen 241 P-EKVDVIISEP-MGYMLVN-ERMLESYL----HARKWLKPN-GKMF 279 (517)
T ss_pred c-hhccEEEecc-chhhhhh-HHHHHHHH----HHHhhcCCC-Cccc
Confidence 6 6899999986 3433322 23444454 366899998 6554
No 208
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.07 E-value=0.0052 Score=63.53 Aligned_cols=117 Identities=16% Similarity=0.089 Sum_probs=72.2
Q ss_pred EEE-EEecCcceeccccccc-ccccccc-c--ccccccchHHH--HHHHHHHh-------CCCCCCEEEEEcCCcChHHH
Q psy19 262 INL-QIRYNEAYVGLPVTQT-SLHRRNI-V--EFNITTLKPTI--AYNMVRLA-------SPIPGDVFLDPMCGGGTIPV 327 (494)
Q Consensus 262 i~v-~l~~~~~~l~l~lsg~-sL~~Rgy-~--~~~~a~L~e~l--Aa~ll~la-------~~~~g~~VLDP~CGSGtilI 327 (494)
+++ .+..+.+++|+....- |.+.-|. + +...+|-|..+ ..++..+. ...+|.++||+||++|++.-
T Consensus 148 lh~~f~~~~~~~vG~s~~~~~s~~~~Gi~Rl~~p~~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~ 227 (357)
T PRK11760 148 LHVFFIAPGCCYVGYSYSNNSSPWPMGIPRLKFPADAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTY 227 (357)
T ss_pred EEEEEEeCCEEEEEeccCCCCCcCCCCcccccCCCCCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHH
Confidence 444 3578899999887642 2333333 1 11233333322 11111111 23589999999999999999
Q ss_pred HHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcC
Q psy19 328 ECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDL 392 (494)
Q Consensus 328 EAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNP 392 (494)
.++.. ++.|+|+|..+-+ .++.. ..+|.....|.+......+.+|+||||.
T Consensus 228 ~L~~r--G~~V~AVD~g~l~-----~~L~~-------~~~V~h~~~d~fr~~p~~~~vDwvVcDm 278 (357)
T PRK11760 228 QLVRR--GMFVTAVDNGPMA-----QSLMD-------TGQVEHLRADGFKFRPPRKNVDWLVCDM 278 (357)
T ss_pred HHHHc--CCEEEEEechhcC-----HhhhC-------CCCEEEEeccCcccCCCCCCCCEEEEec
Confidence 88887 6799999965522 22221 2346777788776633246899999985
No 209
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.06 E-value=0.0002 Score=69.20 Aligned_cols=141 Identities=18% Similarity=0.099 Sum_probs=96.2
Q ss_pred EEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCC-CeeEEEEcCC
Q psy19 315 FLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPA-CVDGIVTDLP 393 (494)
Q Consensus 315 VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~-~~D~IVtNPP 393 (494)
|.|+||--|.+++.++......+++++|+++..++.|+.|+..+|+ .+++.+..+|-... +..+ ..|.||.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l----~~~i~~rlgdGL~~-l~~~e~~d~ivI--- 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL----EDRIEVRLGDGLEV-LKPGEDVDTIVI--- 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-SGGGG---GGG---EEEE---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----cccEEEEECCcccc-cCCCCCCCEEEE---
Confidence 6899999999999999986656899999999999999999998875 56789999996653 2223 3676554
Q ss_pred CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec--CHHHHHHHHHhccccceeeeeEEEccCCceEEEEEEeeCC
Q psy19 394 FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS--DRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTA 471 (494)
Q Consensus 394 YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~--~~~~l~~~l~~~~~l~~~~~~~~v~~Ggl~~~i~v~~~~~ 471 (494)
--+| ..+...+|......++.. .+++ +.| +...+++.+...| |.......+.-++.--.|....+..
T Consensus 73 --AGMG-----G~lI~~ILe~~~~~~~~~-~~lI-LqP~~~~~~LR~~L~~~g--f~I~~E~lv~e~~~~YeIi~~~~~~ 141 (205)
T PF04816_consen 73 --AGMG-----GELIIEILEAGPEKLSSA-KRLI-LQPNTHAYELRRWLYENG--FEIIDEDLVEENGRFYEIIVAERGE 141 (205)
T ss_dssp --EEE------HHHHHHHHHHTGGGGTT---EEE-EEESS-HHHHHHHHHHTT--EEEEEEEEEEETTEEEEEEEEEESS
T ss_pred --ecCC-----HHHHHHHHHhhHHHhccC-CeEE-EeCCCChHHHHHHHHHCC--CEEEEeEEEeECCEEEEEEEEEeCC
Confidence 0222 345677888887777654 4544 445 3455788888887 6778887877767666666776666
Q ss_pred CCC
Q psy19 472 DLF 474 (494)
Q Consensus 472 ~~~ 474 (494)
...
T Consensus 142 ~~~ 144 (205)
T PF04816_consen 142 EKP 144 (205)
T ss_dssp S--
T ss_pred CCC
Confidence 555
No 210
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.98 E-value=4e-05 Score=74.04 Aligned_cols=123 Identities=19% Similarity=0.118 Sum_probs=75.2
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhc-------cCCCCc
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN-------SGNLNR 364 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~-------g~~~~~ 364 (494)
-..+.+...+.++..++++++++++|+|||.|...+.||+..+-...+|+|+.+...+.|+.+.+.. |. .
T Consensus 23 YGEi~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~---~ 99 (205)
T PF08123_consen 23 YGEISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK---R 99 (205)
T ss_dssp GGGCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB----
T ss_pred eeecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc---c
Confidence 4457778888889999999999999999999999999998865556999999999999888765432 22 1
Q ss_pred ccceeeeeeccccccCCC---CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEE
Q psy19 365 ELKVSPLVCNVRQLCFKP---ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAI 427 (494)
Q Consensus 365 ~~~i~~~~~Da~~l~~~~---~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lv 427 (494)
...+.+.++|+.+.++.. ...|+|++|== -. . .++.. .|.++..-||+| -+++
T Consensus 100 ~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~---~F--~---~~l~~-~L~~~~~~lk~G-~~II 155 (205)
T PF08123_consen 100 PGKVELIHGDFLDPDFVKDIWSDADVVFVNNT---CF--D---PDLNL-ALAELLLELKPG-ARII 155 (205)
T ss_dssp --EEEEECS-TTTHHHHHHHGHC-SEEEE--T---TT------HHHHH-HHHHHHTTS-TT--EEE
T ss_pred cccceeeccCccccHhHhhhhcCCCEEEEecc---cc--C---HHHHH-HHHHHHhcCCCC-CEEE
Confidence 245778889987653211 24688988731 11 1 11222 234566678887 5543
No 211
>PRK04148 hypothetical protein; Provisional
Probab=97.96 E-value=3.9e-05 Score=69.06 Aligned_cols=82 Identities=18% Similarity=0.016 Sum_probs=60.6
Q ss_pred HHHHHHHHHhCCCCCCEEEEEcCCcCh-HHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 298 TIAYNMVRLASPIPGDVFLDPMCGGGT-IPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 298 ~lAa~ll~la~~~~g~~VLDP~CGSGt-ilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
.+|..+........+.+++|+|||+|. ++..++.. +..|+|+|+++.+++.|+.+. ++++..|.+
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~------------~~~v~dDlf 68 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLG------------LNAFVDDLF 68 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhC------------CeEEECcCC
Confidence 456665555444456789999999996 87777766 789999999999998887763 257888998
Q ss_pred cccCC-CCCeeEEEE-cCC
Q psy19 377 QLCFK-PACVDGIVT-DLP 393 (494)
Q Consensus 377 ~l~~~-~~~~D~IVt-NPP 393 (494)
+.++. -..+|+|.+ +||
T Consensus 69 ~p~~~~y~~a~liysirpp 87 (134)
T PRK04148 69 NPNLEIYKNAKLIYSIRPP 87 (134)
T ss_pred CCCHHHHhcCCEEEEeCCC
Confidence 76432 146888875 444
No 212
>KOG3010|consensus
Probab=97.95 E-value=1.6e-05 Score=77.60 Aligned_cols=107 Identities=16% Similarity=0.077 Sum_probs=67.1
Q ss_pred hCCCCCC-EEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCe
Q psy19 307 ASPIPGD-VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACV 385 (494)
Q Consensus 307 a~~~~g~-~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~ 385 (494)
+...++. .++|.|||+|--++.+|..+ -.|+|+|+++.|++.|++--...-. .-...+...+...|.-.++++
T Consensus 28 a~~~~~h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~----~t~~~ms~~~~v~L~g~e~SV 101 (261)
T KOG3010|consen 28 ASRTEGHRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYC----HTPSTMSSDEMVDLLGGEESV 101 (261)
T ss_pred HhhCCCcceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccc----cCCccccccccccccCCCcce
Confidence 3444443 89999999997777777764 4799999999999988864432111 011223333444443235799
Q ss_pred eEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 386 DGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 386 D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
|+|++= ..-.--++. +|++.+.|+||+.||.+++
T Consensus 102 DlI~~A-----qa~HWFdle----~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 102 DLITAA-----QAVHWFDLE----RFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred eeehhh-----hhHHhhchH----HHHHHHHHHcCCCCCEEEE
Confidence 999881 111112344 4555899999987355554
No 213
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.93 E-value=0.00025 Score=68.31 Aligned_cols=149 Identities=15% Similarity=0.210 Sum_probs=82.1
Q ss_pred cccccccc-ccccchHHHHHHHHHHhC-CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccC
Q psy19 283 HRRNIVEF-NITTLKPTIAYNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSG 360 (494)
Q Consensus 283 ~~Rgy~~~-~~a~L~e~lAa~ll~la~-~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~ 360 (494)
++.||+.. ..=|.+| ...++.... ..++.+|.|.|||-+.++-... ....|+..|+-..
T Consensus 44 YH~Gfr~Qv~~WP~nP--vd~iI~~l~~~~~~~viaD~GCGdA~la~~~~---~~~~V~SfDLva~-------------- 104 (219)
T PF05148_consen 44 YHEGFRQQVKKWPVNP--VDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP---NKHKVHSFDLVAP-------------- 104 (219)
T ss_dssp HHHHHHHHHCTSSS-H--HHHHHHHHCTS-TTS-EEEES-TT-HHHHH-----S---EEEEESS-S--------------
T ss_pred HHHHHHHHHhcCCCCc--HHHHHHHHHhcCCCEEEEECCCchHHHHHhcc---cCceEEEeeccCC--------------
Confidence 45677522 2333443 233444443 3346799999999998874322 2357899998531
Q ss_pred CCCcccceeeeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE--ec---CHHH
Q psy19 361 NLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL--TS---DRKH 435 (494)
Q Consensus 361 ~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll--t~---~~~~ 435 (494)
+-.+..+|+..+|++++++|++|+-.- -+|+. |..|+.|+.|+|||| |.++|. .+ +...
T Consensus 105 ------n~~Vtacdia~vPL~~~svDv~VfcLS---LMGTn------~~~fi~EA~RvLK~~-G~L~IAEV~SRf~~~~~ 168 (219)
T PF05148_consen 105 ------NPRVTACDIANVPLEDESVDVAVFCLS---LMGTN------WPDFIREANRVLKPG-GILKIAEVKSRFENVKQ 168 (219)
T ss_dssp ------STTEEES-TTS-S--TT-EEEEEEES------SS-------HHHHHHHHHHHEEEE-EEEEEEEEGGG-S-HHH
T ss_pred ------CCCEEEecCccCcCCCCceeEEEEEhh---hhCCC------cHHHHHHHHheeccC-cEEEEEEecccCcCHHH
Confidence 114788999999999999999998542 12221 788999999999999 998883 33 4455
Q ss_pred HHHHHHhccccceeeeeEEEccCCceEEEEEEeeCC
Q psy19 436 LIQALHITSALWKCRKQIKINMSGMKSFVFILNRTA 471 (494)
Q Consensus 436 l~~~l~~~~~l~~~~~~~~v~~Ggl~~~i~v~~~~~ 471 (494)
|.+.+...|+ ....+ ...| . .-.++.|.+..
T Consensus 169 F~~~~~~~GF--~~~~~-d~~n-~-~F~~f~F~K~~ 199 (219)
T PF05148_consen 169 FIKALKKLGF--KLKSK-DESN-K-HFVLFEFKKIR 199 (219)
T ss_dssp HHHHHHCTTE--EEEEE-E--S-T-TEEEEEEEE-S
T ss_pred HHHHHHHCCC--eEEec-ccCC-C-eEEEEEEEEcC
Confidence 7777887773 44332 2222 2 33556666554
No 214
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.92 E-value=7e-05 Score=75.81 Aligned_cols=104 Identities=18% Similarity=0.109 Sum_probs=67.8
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
.|.+|||+|||+|..+.+++...+ ..|+|+|-++..+...+.--+..|. ...+...-.-+.++|. .+.||+|+|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~----~~~~~~lplgvE~Lp~-~~~FDtVF~ 188 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQ----DPPVFELPLGVEDLPN-LGAFDTVFS 188 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCC----CccEEEcCcchhhccc-cCCcCEEEE
Confidence 678999999999999999998853 4799999988876665443333321 1122233234555555 578999998
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+|--..... --..|.++...|++| |.+++-
T Consensus 189 -------MGVLYHrr~-Pl~~L~~Lk~~L~~g-GeLvLE 218 (315)
T PF08003_consen 189 -------MGVLYHRRS-PLDHLKQLKDSLRPG-GELVLE 218 (315)
T ss_pred -------eeehhccCC-HHHHHHHHHHhhCCC-CEEEEE
Confidence 221100000 013566789999999 988863
No 215
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.91 E-value=0.0002 Score=66.37 Aligned_cols=124 Identities=15% Similarity=0.103 Sum_probs=93.6
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
-.|..+-+|+.|+...+|..|..||+.|.|||.|.-..... -+...++++|.+++-+....+--. .+++
T Consensus 29 I~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p----------~~~i 98 (194)
T COG3963 29 ILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP----------GVNI 98 (194)
T ss_pred ecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC----------Cccc
Confidence 45677889999999999999999999999999998766554 334679999999999877665432 2368
Q ss_pred eeecccccc-----CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 371 LVCNVRQLC-----FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 371 ~~~Da~~l~-----~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+++|+.++. ..+..||.|||-.|+-. +..+. --++|+.+...|.+| |-++-++..
T Consensus 99 i~gda~~l~~~l~e~~gq~~D~viS~lPll~-~P~~~-----~iaile~~~~rl~~g-g~lvqftYg 158 (194)
T COG3963 99 INGDAFDLRTTLGEHKGQFFDSVISGLPLLN-FPMHR-----RIAILESLLYRLPAG-GPLVQFTYG 158 (194)
T ss_pred cccchhhHHHHHhhcCCCeeeeEEecccccc-CcHHH-----HHHHHHHHHHhcCCC-CeEEEEEec
Confidence 999998874 33457999999888642 22221 125666788889998 988887765
No 216
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.91 E-value=6.7e-05 Score=77.63 Aligned_cols=125 Identities=18% Similarity=0.234 Sum_probs=78.6
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCC-----CCcccceeeeeecccccc----CC
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGN-----LNRELKVSPLVCNVRQLC----FK 381 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~-----~~~~~~i~~~~~Da~~l~----~~ 381 (494)
++..|||+|||-|+=+.--... .-..++|+||+...|+.|++..+...-. ....-...++.+|.+... +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 6789999999988765433322 2368999999999999999877322100 001123456777776431 22
Q ss_pred C--CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHH
Q psy19 382 P--ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALH 441 (494)
Q Consensus 382 ~--~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~ 441 (494)
+ ..||+|=|---..-...+ .+-.+.||..+...|+|| |.++..++|...+.+.++
T Consensus 141 ~~~~~FDvVScQFalHY~Fes----e~~ar~~l~Nvs~~Lk~G-G~FIgT~~d~~~i~~~l~ 197 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFES----EEKARQFLKNVSSLLKPG-GYFIGTTPDSDEIVKRLR 197 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSS----HHHHHHHHHHHHHTEEEE-EEEEEEEE-HHHHHCCHH
T ss_pred ccCCCcceeehHHHHHHhcCC----HHHHHHHHHHHHHhcCCC-CEEEEEecCHHHHHHHHH
Confidence 2 489999985443333333 333567888999999999 999999999876644444
No 217
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=0.00014 Score=75.11 Aligned_cols=149 Identities=19% Similarity=0.192 Sum_probs=95.3
Q ss_pred EEecCcceecccccccccccccccccccc-cchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeC
Q psy19 265 QIRYNEAYVGLPVTQTSLHRRNIVEFNIT-TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDI 343 (494)
Q Consensus 265 ~l~~~~~~l~l~lsg~sL~~Rgy~~~~~a-~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Di 343 (494)
.+.++.+.+.+.-...---++...|+.|+ -++-.|.-..+...+-.-..+|+|+++|||.=+|-.|..-+...++..||
T Consensus 5 ~v~EG~~~i~vP~~~~~~~~~~pVFYNP~m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDi 84 (380)
T COG1867 5 EVKEGSAKIYVPDPYKGGSKRAPVFYNPAMEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDI 84 (380)
T ss_pred EeecCceEEEcCCCCCCCCCCCcceeCchhhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccC
Confidence 34555555555443111123333455543 23444443333333211257899999999999998888755558999999
Q ss_pred CHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC-CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCC
Q psy19 344 NEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK-PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQ 422 (494)
Q Consensus 344 d~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~-~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg 422 (494)
+|.|++.++.|++.|.. ....+++.|+..+-.. ...||+|=.|| ||.-. -|+..+.+.++.+
T Consensus 85 sp~Avelik~Nv~~N~~-----~~~~v~n~DAN~lm~~~~~~fd~IDiDP-FGSPa-----------PFlDaA~~s~~~~ 147 (380)
T COG1867 85 SPKAVELIKENVRLNSG-----EDAEVINKDANALLHELHRAFDVIDIDP-FGSPA-----------PFLDAALRSVRRG 147 (380)
T ss_pred CHHHHHHHHHHHHhcCc-----ccceeecchHHHHHHhcCCCccEEecCC-CCCCc-----------hHHHHHHHHhhcC
Confidence 99999999999998832 1234666888777322 26899999995 77432 3555677777777
Q ss_pred CcEEEEEec
Q psy19 423 IGRAILLTS 431 (494)
Q Consensus 423 ~G~lvllt~ 431 (494)
|.+.+-..
T Consensus 148 -G~l~vTAT 155 (380)
T COG1867 148 -GLLCVTAT 155 (380)
T ss_pred -CEEEEEec
Confidence 77666433
No 218
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.88 E-value=5.3e-05 Score=79.73 Aligned_cols=108 Identities=18% Similarity=0.120 Sum_probs=75.9
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-CCCCCeeEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPH-TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-FKPACVDGI 388 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~-~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~~~~~~D~I 388 (494)
.+.++||+++|||-=+|-.+...++ ..|+..|+|+.+++..++|++.|++.. +.+.+.+.|+..+- .....||+|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~---~~~~v~~~DAn~ll~~~~~~fD~I 125 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED---ERIEVSNMDANVLLYSRQERFDVI 125 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG---CCEEEEES-HHHHHCHSTT-EEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC---ceEEEehhhHHHHhhhccccCCEE
Confidence 4568999999999988888877433 579999999999999999999998632 26788899998763 234689999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
=.|| ||.- .-||..+.+.++.| |.+.+-+.|..
T Consensus 126 DlDP-fGSp-----------~pfldsA~~~v~~g-Gll~vTaTD~a 158 (377)
T PF02005_consen 126 DLDP-FGSP-----------APFLDSALQAVKDG-GLLCVTATDTA 158 (377)
T ss_dssp EE---SS-------------HHHHHHHHHHEEEE-EEEEEEE--HH
T ss_pred EeCC-CCCc-----------cHhHHHHHHHhhcC-CEEEEeccccc
Confidence 9995 7743 25677788889988 87777665543
No 219
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.87 E-value=0.00066 Score=66.71 Aligned_cols=134 Identities=13% Similarity=0.046 Sum_probs=72.9
Q ss_pred chHHHHHHHHHHhCC-CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 295 LKPTIAYNMVRLASP-IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 295 L~e~lAa~ll~la~~-~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
..-++.++++.+..- -.|..||=+|=+-- ++|.+|+..+...|+-+|||++.++..++.++..|+ .++..+.
T Consensus 27 ~eT~~~Ra~~~~~~gdL~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl------~i~~~~~ 99 (243)
T PF01861_consen 27 PETTLRRAALMAERGDLEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL------PIEAVHY 99 (243)
T ss_dssp HHHHHHHHHHHHHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--------EEEE--
T ss_pred HHHHHHHHHHHHhcCcccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC------ceEEEEe
Confidence 334444444444332 35778886653333 355666655668999999999999999999998875 2678889
Q ss_pred ccccccCC---CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE-ecCH------HHHHHHHHhc
Q psy19 374 NVRQLCFK---PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL-TSDR------KHLIQALHIT 443 (494)
Q Consensus 374 Da~~l~~~---~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll-t~~~------~~l~~~l~~~ 443 (494)
|++.- ++ .++||+++|||||... -..-|+......||..++..++- +... ..+++.+.++
T Consensus 100 DlR~~-LP~~~~~~fD~f~TDPPyT~~---------G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~ 169 (243)
T PF01861_consen 100 DLRDP-LPEELRGKFDVFFTDPPYTPE---------GLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEM 169 (243)
T ss_dssp -TTS----TTTSS-BSEEEE---SSHH---------HHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS
T ss_pred ccccc-CCHHHhcCCCEEEeCCCCCHH---------HHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHC
Confidence 99874 33 2689999999999742 14467778888998652344443 3321 2356666666
Q ss_pred cc
Q psy19 444 SA 445 (494)
Q Consensus 444 ~~ 445 (494)
|.
T Consensus 170 gl 171 (243)
T PF01861_consen 170 GL 171 (243)
T ss_dssp --
T ss_pred Cc
Confidence 63
No 220
>KOG3045|consensus
Probab=97.85 E-value=7.3e-05 Score=73.63 Aligned_cols=148 Identities=20% Similarity=0.231 Sum_probs=93.2
Q ss_pred ccccccccc-ccccchHHHHHHHHHHhCCC-CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhcc
Q psy19 282 LHRRNIVEF-NITTLKPTIAYNMVRLASPI-PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNS 359 (494)
Q Consensus 282 L~~Rgy~~~-~~a~L~e~lAa~ll~la~~~-~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g 359 (494)
++++||+.. ..=|.+| ...++...... ...+|.|.|||-+-|+. .. ...|+..|+-..
T Consensus 151 lYH~gfr~QV~kWP~nP--ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a~------------- 210 (325)
T KOG3045|consen 151 LYHAGFRSQVKKWPENP--LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVAV------------- 210 (325)
T ss_pred HHHHHHHHHHHhCCCCh--HHHHHHHHHhCcCceEEEecccchhhhhh---cc--ccceeeeeeecC-------------
Confidence 567788532 2223332 22344444333 45689999999998854 22 357888887431
Q ss_pred CCCCcccceeeeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE--Eec---CHH
Q psy19 360 GNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL--LTS---DRK 434 (494)
Q Consensus 360 ~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl--lt~---~~~ 434 (494)
+-.++.+|++++|++++++|++|+=.- -+|+ + +..|+.++.|+|++| |.++| +.+ +..
T Consensus 211 -------~~~V~~cDm~~vPl~d~svDvaV~CLS---LMgt--n----~~df~kEa~RiLk~g-G~l~IAEv~SRf~dv~ 273 (325)
T KOG3045|consen 211 -------NERVIACDMRNVPLEDESVDVAVFCLS---LMGT--N----LADFIKEANRILKPG-GLLYIAEVKSRFSDVK 273 (325)
T ss_pred -------CCceeeccccCCcCccCcccEEEeeHh---hhcc--c----HHHHHHHHHHHhccC-ceEEEEehhhhcccHH
Confidence 125788999999999999999887321 1222 2 457888999999999 98887 333 455
Q ss_pred HHHHHHHhccccceeeeeEEEccCCceEEEEEEeeCC
Q psy19 435 HLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTA 471 (494)
Q Consensus 435 ~l~~~l~~~~~l~~~~~~~~v~~Ggl~~~i~v~~~~~ 471 (494)
.|.+++..+|+ ...+ ..+.| -.-.+|.|..+.
T Consensus 274 ~f~r~l~~lGF--~~~~-~d~~n--~~F~lfefkK~~ 305 (325)
T KOG3045|consen 274 GFVRALTKLGF--DVKH-KDVSN--KYFTLFEFKKTP 305 (325)
T ss_pred HHHHHHHHcCC--eeee-hhhhc--ceEEEEEEecCC
Confidence 68888888884 3332 22332 223455565554
No 221
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.84 E-value=1.4e-05 Score=77.48 Aligned_cols=111 Identities=21% Similarity=0.186 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
|.+-+.|+.-++..+-.++||+|||||-++...-.+ ..++.|+||+..|++.|.+.-- .+ .+.+.|+.
T Consensus 111 P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~--------YD--~L~~Aea~ 178 (287)
T COG4976 111 PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGL--------YD--TLYVAEAV 178 (287)
T ss_pred HHHHHHHHHhccCCccceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccc--------hH--HHHHHHHH
Confidence 445556777676656679999999999988776555 4689999999999999986421 11 34555554
Q ss_pred cc-c-CCCCCeeEEEEc--CCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 377 QL-C-FKPACVDGIVTD--LPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 377 ~l-~-~~~~~~D~IVtN--PPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
.+ + .....||+|+.- .||- | ++. .++.-+...|+|| |.+.+.+
T Consensus 179 ~Fl~~~~~er~DLi~AaDVl~Yl---G---~Le----~~~~~aa~~L~~g-GlfaFSv 225 (287)
T COG4976 179 LFLEDLTQERFDLIVAADVLPYL---G---ALE----GLFAGAAGLLAPG-GLFAFSV 225 (287)
T ss_pred HHhhhccCCcccchhhhhHHHhh---c---chh----hHHHHHHHhcCCC-ceEEEEe
Confidence 33 1 334689988762 3442 2 223 3444688899998 8776644
No 222
>KOG2915|consensus
Probab=97.84 E-value=0.00027 Score=70.14 Aligned_cols=120 Identities=17% Similarity=0.164 Sum_probs=93.4
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
.++.+....||.+||+-|.|||+++...++. .|-.+++-.|++..-.+.|++-.+..|+ .+.+.+.+-|+...-|
T Consensus 96 ~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi----~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 96 MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI----GDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC----CcceEEEEeecccCCc
Confidence 4667778899999999999999999888765 4567899999999999999999987764 6778999999877644
Q ss_pred C--CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHH
Q psy19 381 K--PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQ 438 (494)
Q Consensus 381 ~--~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~ 438 (494)
. +..+|.|..|.|--. ..+..+..+||.+||+++-++|-.+.+.+
T Consensus 172 ~~ks~~aDaVFLDlPaPw-------------~AiPha~~~lk~~g~r~csFSPCIEQvqr 218 (314)
T KOG2915|consen 172 LIKSLKADAVFLDLPAPW-------------EAIPHAAKILKDEGGRLCSFSPCIEQVQR 218 (314)
T ss_pred cccccccceEEEcCCChh-------------hhhhhhHHHhhhcCceEEeccHHHHHHHH
Confidence 3 468999999998221 12224566888765799989986655544
No 223
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.82 E-value=0.0005 Score=68.32 Aligned_cols=114 Identities=19% Similarity=0.155 Sum_probs=78.9
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-cCCCC-CeeEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-CFKPA-CVDGI 388 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-~~~~~-~~D~I 388 (494)
....||=+|-|.|+++-++....+...+.++|||+.+++.|++-+...... ....+++++.+|+... .-... +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 457899999999999998876544568999999999999999876643221 1235788999999876 22224 89999
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
|.|.+-.. +.... -.-..|++.+.+.|+|+ |.+++-+
T Consensus 155 i~D~~dp~--~~~~~--l~t~ef~~~~~~~L~~~-Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPD--GPAPN--LFTREFYQLCKRRLKPD-GVLVLQA 191 (246)
T ss_dssp EEESSSTT--SCGGG--GSSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred EEeCCCCC--CCccc--ccCHHHHHHHHhhcCCC-cEEEEEc
Confidence 99987421 11111 11235666899999999 9887743
No 224
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.81 E-value=2.3e-05 Score=73.78 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=61.7
Q ss_pred CEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEc
Q psy19 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTD 391 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtN 391 (494)
+.+.|+|+|||-++.-||.. .-+|++++.||...+.|.+|+...|. .+++++.+|+++..+ ...|+|||.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~-----~n~evv~gDA~~y~f--e~ADvvicE 103 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGD-----VNWEVVVGDARDYDF--ENADVVICE 103 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCC-----cceEEEecccccccc--cccceeHHH
Confidence 68999999999999999887 56899999999999999999987664 467899999999987 467999994
No 225
>PRK13699 putative methylase; Provisional
Probab=97.81 E-value=6.6e-05 Score=73.69 Aligned_cols=75 Identities=13% Similarity=0.106 Sum_probs=52.6
Q ss_pred eeeeeccccc--cCCCCCeeEEEEcCCCccccCC-------ccchHHHHHHHHHHHhhcccCCCcEEEEEecCH--HHHH
Q psy19 369 SPLVCNVRQL--CFKPACVDGIVTDLPFGKRVGS-------KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR--KHLI 437 (494)
Q Consensus 369 ~~~~~Da~~l--~~~~~~~D~IVtNPPYG~r~~~-------~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~--~~l~ 437 (494)
.++++|+.++ .++++++|+|||||||+..... .....+.+..++.++.|+|||| |.+++.+... ..+.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpg-g~l~if~~~~~~~~~~ 81 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKD-ALMVSFYGWNRVDRFM 81 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCC-CEEEEEeccccHHHHH
Confidence 5788998876 5778999999999999732110 1123456778889999999998 9888765532 2344
Q ss_pred HHHHhcc
Q psy19 438 QALHITS 444 (494)
Q Consensus 438 ~~l~~~~ 444 (494)
.++.+.|
T Consensus 82 ~al~~~G 88 (227)
T PRK13699 82 AAWKNAG 88 (227)
T ss_pred HHHHHCC
Confidence 4565555
No 226
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.81 E-value=0.00026 Score=68.09 Aligned_cols=121 Identities=17% Similarity=0.203 Sum_probs=81.7
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 299 lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
|++.|..... ..+..||+++||||.-.+..|..+|.....-+|.++......+..+...++. ++ ...+..|+..-
T Consensus 14 Il~vL~~~l~-~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~-Nv---~~P~~lDv~~~ 88 (204)
T PF06080_consen 14 ILEVLKQYLP-DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLP-NV---RPPLALDVSAP 88 (204)
T ss_pred HHHHHHHHhC-ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCc-cc---CCCeEeecCCC
Confidence 4444444332 2233699999999999999999999999999999999987877777766542 12 23445566554
Q ss_pred cC--------CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 379 CF--------KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 379 ~~--------~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+. ....||+|+|-=- ..+. -......+++.++++|++| |.++++-|
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~~N~--lHI~----p~~~~~~lf~~a~~~L~~g-G~L~~YGP 142 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFCINM--LHIS----PWSAVEGLFAGAARLLKPG-GLLFLYGP 142 (204)
T ss_pred CCccccccccCCCCcceeeehhH--HHhc----CHHHHHHHHHHHHHhCCCC-CEEEEeCC
Confidence 22 1347999887210 0111 1334456777899999999 99888644
No 227
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.80 E-value=0.0002 Score=73.08 Aligned_cols=92 Identities=20% Similarity=0.286 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
|.|...++....++++..++|.--|.|+...+.+...+.++++|+|.|+.|++.|++++... .+++.+++.++.
T Consensus 6 PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~------~~r~~~~~~~F~ 79 (310)
T PF01795_consen 6 PVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF------DDRFIFIHGNFS 79 (310)
T ss_dssp -TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC------CTTEEEEES-GG
T ss_pred cccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc------cceEEEEeccHH
Confidence 34445555566678899999999999999999888888899999999999999999888733 456788998887
Q ss_pred ccc-----C-CCCCeeEEEEcCCC
Q psy19 377 QLC-----F-KPACVDGIVTDLPF 394 (494)
Q Consensus 377 ~l~-----~-~~~~~D~IVtNPPY 394 (494)
++. . ....+|.|+.|.=+
T Consensus 80 ~l~~~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 80 NLDEYLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp GHHHHHHHTTTTS-EEEEEEE-S-
T ss_pred HHHHHHHHccCCCccCEEEEcccc
Confidence 763 2 23489999998654
No 228
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.78 E-value=0.00011 Score=74.93 Aligned_cols=92 Identities=15% Similarity=0.128 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
|.|...++....+++|..++|.-||.|+-+..++...+.+.++|+|.|+.|+..|++++... ..++.++++++.
T Consensus 6 pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~------~~R~~~i~~nF~ 79 (305)
T TIGR00006 6 SVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF------EGRVVLIHDNFA 79 (305)
T ss_pred chhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc------CCcEEEEeCCHH
Confidence 45666677777788899999999999999998887765689999999999999999998743 246788999887
Q ss_pred ccc--C---CCCCeeEEEEcCCC
Q psy19 377 QLC--F---KPACVDGIVTDLPF 394 (494)
Q Consensus 377 ~l~--~---~~~~~D~IVtNPPY 394 (494)
++. + ...++|.|+.|.=.
T Consensus 80 ~l~~~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 80 NFFEHLDELLVTKIDGILVDLGV 102 (305)
T ss_pred HHHHHHHhcCCCcccEEEEeccC
Confidence 763 1 22469999998654
No 229
>KOG1663|consensus
Probab=97.77 E-value=0.00032 Score=68.17 Aligned_cols=114 Identities=12% Similarity=0.019 Sum_probs=85.4
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 299 lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
.+..+.++.+.-...+++|+|.-||.-++..|+..| +.+++++|+|+.+.+.+.+-.+.+|+ ..+|+++++++.+
T Consensus 61 ~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv----~~KI~~i~g~a~e 136 (237)
T KOG1663|consen 61 KGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV----DHKITFIEGPALE 136 (237)
T ss_pred HHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc----cceeeeeecchhh
Confidence 333344444444556899999888888887777655 68999999999999999999998875 5678999998765
Q ss_pred c------cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 378 L------CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 378 l------~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
. ....++||+++.|- -...|...+.++.+++|+| |.+++
T Consensus 137 sLd~l~~~~~~~tfDfaFvDa-----------dK~nY~~y~e~~l~Llr~G-Gvi~~ 181 (237)
T KOG1663|consen 137 SLDELLADGESGTFDFAFVDA-----------DKDNYSNYYERLLRLLRVG-GVIVV 181 (237)
T ss_pred hHHHHHhcCCCCceeEEEEcc-----------chHHHHHHHHHHHhhcccc-cEEEE
Confidence 3 12346899999862 1233667777899999999 87765
No 230
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.75 E-value=0.00032 Score=71.02 Aligned_cols=125 Identities=15% Similarity=0.111 Sum_probs=88.9
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-
Q psy19 301 YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC- 379 (494)
Q Consensus 301 a~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~- 379 (494)
..+..++..++ ..||=+|-|.|+++-|++...+..+++.+|||+..++.|++-+........ ..+++++..|..++-
T Consensus 67 ~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~Dg~~~v~ 144 (282)
T COG0421 67 AHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDDGVEFLR 144 (282)
T ss_pred HhchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEeccHHHHHH
Confidence 33444555556 599999999999999998876667999999999999999998865432112 468899999998872
Q ss_pred CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 380 FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 380 ~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
-...+||+||+|---+. +....+ +-..|++.+.+.|+++ |.++.-+.+
T Consensus 145 ~~~~~fDvIi~D~tdp~--gp~~~L--ft~eFy~~~~~~L~~~-Gi~v~q~~~ 192 (282)
T COG0421 145 DCEEKFDVIIVDSTDPV--GPAEAL--FTEEFYEGCRRALKED-GIFVAQAGS 192 (282)
T ss_pred hCCCcCCEEEEcCCCCC--Cccccc--CCHHHHHHHHHhcCCC-cEEEEecCC
Confidence 11247999999854331 221111 1134556899999998 987776444
No 231
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.75 E-value=6.3e-05 Score=76.30 Aligned_cols=110 Identities=13% Similarity=0.109 Sum_probs=70.5
Q ss_pred CCEEEEEcCCcC----hHHHHHHhcC---C-CCeEEEEeCCHHHHHHHHHHHHh----cc--------------------
Q psy19 312 GDVFLDPMCGGG----TIPVECSLSY---P-HTFFVCGDINEKLVLKTQANVLH----NS-------------------- 359 (494)
Q Consensus 312 g~~VLDP~CGSG----tilIEAA~~~---~-~~~v~G~Did~~al~~Ar~Nl~~----~g-------------------- 359 (494)
.-+|+..||.|| ++++.+...+ + ...|+|+|||+.+++.|++..-. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 368999999999 4444333321 1 36899999999999999875310 00
Q ss_pred --CCCCcccceeeeeeccccccCC-CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 360 --GNLNRELKVSPLVCNVRQLCFK-PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 360 --~~~~~~~~i~~~~~Da~~l~~~-~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+...+...|.|.+.|+.+.+++ .+.||+|+|-==+. .. ..+.-..+++.+.+.|+|| |.+++
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvli-yF-----~~~~~~~vl~~l~~~L~pg-G~L~l 260 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMI-YF-----DKTTQERILRRFVPLLKPD-GLLFA 260 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHh-cC-----CHHHHHHHHHHHHHHhCCC-cEEEE
Confidence 1112335677888888875432 46899999921000 00 1123456777899999999 96543
No 232
>KOG2361|consensus
Probab=97.74 E-value=0.00012 Score=71.61 Aligned_cols=102 Identities=14% Similarity=0.139 Sum_probs=71.4
Q ss_pred EEEEEcCCcChHHHHHHhcCCC--CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc----cCCCCCeeE
Q psy19 314 VFLDPMCGGGTIPVECSLSYPH--TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL----CFKPACVDG 387 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~~~--~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l----~~~~~~~D~ 387 (494)
+||++|||.|..........+. ..+++.|.+|.|++..+.|..... .++....+|+..- ++..+++|+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e------~~~~afv~Dlt~~~~~~~~~~~svD~ 147 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE------SRVEAFVWDLTSPSLKEPPEEGSVDI 147 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch------hhhcccceeccchhccCCCCcCccce
Confidence 7999999999987777766555 899999999999999999987542 3444555665432 344578897
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
|++= |-...-. .+-....+..+.++|||| |.+++
T Consensus 148 it~I--FvLSAi~----pek~~~a~~nl~~llKPG-G~llf 181 (264)
T KOG2361|consen 148 ITLI--FVLSAIH----PEKMQSVIKNLRTLLKPG-GSLLF 181 (264)
T ss_pred EEEE--EEEeccC----hHHHHHHHHHHHHHhCCC-cEEEE
Confidence 7661 1111111 122446677899999999 87665
No 233
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.63 E-value=0.00081 Score=63.98 Aligned_cols=100 Identities=15% Similarity=0.067 Sum_probs=77.6
Q ss_pred EEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcCC
Q psy19 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLP 393 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPP 393 (494)
+++|+|+|.|--+|-.|..+|...++.+|...+-+.-.+.-+...|+ .++.++++.+.+ +.....||+|++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-----~nv~v~~~R~E~-~~~~~~fd~v~a--- 121 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-----SNVEVINGRAEE-PEYRESFDVVTA--- 121 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT------SSEEEEES-HHH-TTTTT-EEEEEE---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-----CCEEEEEeeecc-cccCCCccEEEe---
Confidence 89999999999999999999999999999999988888887777765 247889998888 333478999999
Q ss_pred CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 394 FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 394 YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
|.-. .+ ..+++-+..+|++| |+++++-+.
T Consensus 122 ---RAv~--~l----~~l~~~~~~~l~~~-G~~l~~KG~ 150 (184)
T PF02527_consen 122 ---RAVA--PL----DKLLELARPLLKPG-GRLLAYKGP 150 (184)
T ss_dssp ---ESSS--SH----HHHHHHHGGGEEEE-EEEEEEESS
T ss_pred ---ehhc--CH----HHHHHHHHHhcCCC-CEEEEEcCC
Confidence 5433 23 34555788899998 999888764
No 234
>KOG1661|consensus
Probab=97.60 E-value=0.00037 Score=66.89 Aligned_cols=108 Identities=19% Similarity=0.145 Sum_probs=76.0
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCC----C-cccceeeeeeccccccCC
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNL----N-RELKVSPLVCNVRQLCFK 381 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~----~-~~~~i~~~~~Da~~l~~~ 381 (494)
.+||...||.|.|||.+...+|++- ++....|+|.-++.|+.+++|+...-... . -...+.+..+|.+..-..
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 5799999999999999988888552 34445999999999999999997532100 0 013456778898887555
Q ss_pred CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 382 PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 382 ~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
.+.||.|-+- .+. .++- +++...|++| |++++-..
T Consensus 160 ~a~YDaIhvG------Aaa----~~~p----q~l~dqL~~g-Grllip~~ 194 (237)
T KOG1661|consen 160 QAPYDAIHVG------AAA----SELP----QELLDQLKPG-GRLLIPVG 194 (237)
T ss_pred cCCcceEEEc------cCc----cccH----HHHHHhhccC-CeEEEeec
Confidence 5789998772 221 1222 3577789998 88777544
No 235
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.58 E-value=0.00021 Score=68.69 Aligned_cols=112 Identities=13% Similarity=-0.020 Sum_probs=62.7
Q ss_pred CCCEEEEEcCCcCh----HHHHHHhc----CC-CCeEEEEeCCHHHHHHHHHHHH--------------hc-----c---
Q psy19 311 PGDVFLDPMCGGGT----IPVECSLS----YP-HTFFVCGDINEKLVLKTQANVL--------------HN-----S--- 359 (494)
Q Consensus 311 ~g~~VLDP~CGSGt----ilIEAA~~----~~-~~~v~G~Did~~al~~Ar~Nl~--------------~~-----g--- 359 (494)
+.-+|+..||+||- +++.+... .+ ...|+|.|||+.+++.|++-.= .. +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45789999999994 33333331 11 3689999999999999985220 00 0
Q ss_pred -CCCCcccceeeeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 360 -GNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 360 -~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+...+...|.|.+.|..+.+...+.||+|+| |-----=..+.-..+++.+.+.|+|| |.+++=
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~C------RNVlIYF~~~~~~~vl~~l~~~L~pg-G~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFC------RNVLIYFDPETQQRVLRRLHRSLKPG-GYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-------SSGGGS-HHHHHHHHHHHGGGEEEE-EEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEe------cCEEEEeCHHHHHHHHHHHHHHcCCC-CEEEEe
Confidence 0001224678888898883333478999999 21111111334567788899999999 876554
No 236
>KOG1122|consensus
Probab=97.49 E-value=0.0011 Score=69.53 Aligned_cols=118 Identities=23% Similarity=0.262 Sum_probs=87.4
Q ss_pred hCCCCCCEEEEEcCCcCh--HHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc---CC
Q psy19 307 ASPIPGDVFLDPMCGGGT--IPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC---FK 381 (494)
Q Consensus 307 a~~~~g~~VLDP~CGSGt--ilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~---~~ 381 (494)
..+++|.+|||+||--|+ .-|+ |+|.....|++.|.+..-+...+.|+...|++ ...+.+.|...+| ++
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IA-alMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-----ntiv~n~D~~ef~~~~~~ 310 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIA-ALMKNTGVIFANDSNENRLKSLKANLHRLGVT-----NTIVSNYDGREFPEKEFP 310 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHH-HHHcCCceEEecccchHHHHHHHHHHHHhCCC-----ceEEEccCcccccccccC
Confidence 468899999999998774 3444 34433468999999999999999999999863 2236667877654 33
Q ss_pred CCCeeEEEEcCCC-ccccCCc-------------cchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 382 PACVDGIVTDLPF-GKRVGSK-------------SNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 382 ~~~~D~IVtNPPY-G~r~~~~-------------~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
++||-|+.|-|- |..+... .....+-+++|..+...+++| |.+|.-|+.
T Consensus 311 -~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~G-GvLVYSTCS 373 (460)
T KOG1122|consen 311 -GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAG-GVLVYSTCS 373 (460)
T ss_pred -cccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCC-cEEEEEeee
Confidence 389999999994 3222211 123456778888999999999 999998773
No 237
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.45 E-value=0.0028 Score=63.94 Aligned_cols=126 Identities=16% Similarity=0.052 Sum_probs=91.0
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCC--CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH--TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~--~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
.-+.+.|..++..+..-...-+|+|+.||.|.-.+++....|. ..|.-.|.++..|+..++-++..|+ .+.+.|
T Consensus 117 ~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL----~~i~~f 192 (311)
T PF12147_consen 117 VHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL----EDIARF 192 (311)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC----ccceEE
Confidence 3477777777777765456678999999999999999988775 6888999999999999999998875 455689
Q ss_pred eeecccccc-CC--CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 371 LVCNVRQLC-FK--PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 371 ~~~Da~~l~-~~--~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
.++|+++.. +. .-.++++|.-==|. .-.+ .++....+..+.+.+.|| |.++.
T Consensus 193 ~~~dAfd~~~l~~l~p~P~l~iVsGL~E----lF~D-n~lv~~sl~gl~~al~pg-G~lIy 247 (311)
T PF12147_consen 193 EQGDAFDRDSLAALDPAPTLAIVSGLYE----LFPD-NDLVRRSLAGLARALEPG-GYLIY 247 (311)
T ss_pred EecCCCCHhHhhccCCCCCEEEEecchh----hCCc-HHHHHHHHHHHHHHhCCC-cEEEE
Confidence 999998752 11 12456555411111 1112 234556677899999998 87554
No 238
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.33 E-value=0.0014 Score=66.22 Aligned_cols=96 Identities=17% Similarity=0.184 Sum_probs=64.0
Q ss_pred EEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC--CCCeeEEEEc
Q psy19 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK--PACVDGIVTD 391 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~--~~~~D~IVtN 391 (494)
+++|+|||.|++...+.... ...++++|+++.+++..+.|... .++++|+.++... ...+|+|+..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~~-----------~~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFPN-----------KLIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCCC-----------CCccCccccCchhhcCCCCCEEEeC
Confidence 58999999999976665542 23578899999999999998752 1455677666322 2579999999
Q ss_pred CCC------ccccCCccchHHHHHHHHHHHhhcccCC
Q psy19 392 LPF------GKRVGSKSNNFLLYRLFLIEIGKIVRPQ 422 (494)
Q Consensus 392 PPY------G~r~~~~~~~~~ly~~fL~~l~rvLkpg 422 (494)
||. |.+.+.......|+..+++- .+.++|.
T Consensus 70 pPCq~fS~ag~~~~~~d~r~~L~~~~~~~-i~~~~P~ 105 (275)
T cd00315 70 FPCQPFSIAGKRKGFEDTRGTLFFEIIRI-LKEKKPK 105 (275)
T ss_pred CCChhhhHHhhcCCCCCchHHHHHHHHHH-HHhcCCC
Confidence 997 22222222233466666643 3445776
No 239
>KOG1975|consensus
Probab=97.33 E-value=0.0017 Score=65.98 Aligned_cols=139 Identities=18% Similarity=0.162 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccC-CCCcccceeeeeecc
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSG-NLNRELKVSPLVCNV 375 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~-~~~~~~~i~~~~~Da 375 (494)
--+-..|+++.. ++++.++|+|||-|+=++---... -..++|+||..-.|+.|+...+.... .....-.+.|+.+|.
T Consensus 104 NwIKs~LI~~y~-~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc 181 (389)
T KOG1975|consen 104 NWIKSVLINLYT-KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADC 181 (389)
T ss_pred HHHHHHHHHHHh-ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEecc
Confidence 334445555544 367789999999998876432221 14789999999999999876653211 001112357888887
Q ss_pred ccc------cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHh
Q psy19 376 RQL------CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHI 442 (494)
Q Consensus 376 ~~l------~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~ 442 (494)
+.. ++++.+||+|-|---+.-...+.+ -.+.+|+.+++.|+|| |.++--+|+...+.+.++.
T Consensus 182 ~~~~l~d~~e~~dp~fDivScQF~~HYaFetee----~ar~~l~Nva~~LkpG-G~FIgTiPdsd~Ii~rlr~ 249 (389)
T KOG1975|consen 182 FKERLMDLLEFKDPRFDIVSCQFAFHYAFETEE----SARIALRNVAKCLKPG-GVFIGTIPDSDVIIKRLRA 249 (389)
T ss_pred chhHHHHhccCCCCCcceeeeeeeEeeeeccHH----HHHHHHHHHHhhcCCC-cEEEEecCcHHHHHHHHHh
Confidence 653 334445999988655444444332 2456778899999999 9988889998766665553
No 240
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.32 E-value=0.0015 Score=65.58 Aligned_cols=114 Identities=14% Similarity=0.018 Sum_probs=72.2
Q ss_pred CCEEEEEcCCcC----hHHHHHHhcCC-----CCeEEEEeCCHHHHHHHHHHHHh-----ccC-----------------
Q psy19 312 GDVFLDPMCGGG----TIPVECSLSYP-----HTFFVCGDINEKLVLKTQANVLH-----NSG----------------- 360 (494)
Q Consensus 312 g~~VLDP~CGSG----tilIEAA~~~~-----~~~v~G~Did~~al~~Ar~Nl~~-----~g~----------------- 360 (494)
.-+|+-++|+|| ++++.+...++ ...|+|+|||..+++.|+.-.=. .++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 568999999999 45554444453 47899999999999999842211 111
Q ss_pred --CCCcccceeeeeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 361 --NLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 361 --~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
...+...|.|.+.|...-++..+.||+|+| |-------...-.+++..++..|+|| |.+++=.++
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfC------RNVLIYFd~~~q~~il~~f~~~L~~g-G~LflG~sE 243 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFC------RNVLIYFDEETQERILRRFADSLKPG-GLLFLGHSE 243 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEE------cceEEeeCHHHHHHHHHHHHHHhCCC-CEEEEccCc
Confidence 011223566777777665533467999999 31100001233446666899999999 987664443
No 241
>PRK11524 putative methyltransferase; Provisional
Probab=97.29 E-value=0.00033 Score=70.94 Aligned_cols=64 Identities=14% Similarity=0.131 Sum_probs=46.2
Q ss_pred eeeeeeccccc--cCCCCCeeEEEEcCCCccccC--Cc------cchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 368 VSPLVCNVRQL--CFKPACVDGIVTDLPFGKRVG--SK------SNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 368 i~~~~~Da~~l--~~~~~~~D~IVtNPPYG~r~~--~~------~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
..++++|+.+. .+++++||+||+||||+.... .. .+-......++.++.++|||+ |.+++.+..
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~-G~i~i~~~~ 82 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQ-GTMYIMNST 82 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCC-cEEEEEcCc
Confidence 36889999885 356689999999999975211 11 112233457888999999999 999887654
No 242
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.28 E-value=0.0015 Score=64.32 Aligned_cols=40 Identities=10% Similarity=-0.009 Sum_probs=34.0
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHH
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLK 350 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~ 350 (494)
..+.++||.|||+|.|...++... ...++|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHH
Confidence 467899999999999999888763 3589999999987765
No 243
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.27 E-value=0.00068 Score=64.48 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=57.8
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
-.|.+|||.|+|||-.+|.+|+... ..++..|++|..+..++.|++.||+ .+.+...|..- .+..+|+|+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv------~i~~~~~d~~g---~~~~~Dl~L 147 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGV------SILFTHADLIG---SPPAFDLLL 147 (218)
T ss_pred cccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccc------eeEEeeccccC---CCcceeEEE
Confidence 3688999999999999999988742 5788999999999999999999886 24677777654 235799876
Q ss_pred E
Q psy19 390 T 390 (494)
Q Consensus 390 t 390 (494)
.
T Consensus 148 a 148 (218)
T COG3897 148 A 148 (218)
T ss_pred e
Confidence 5
No 244
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.26 E-value=0.0071 Score=54.93 Aligned_cols=89 Identities=18% Similarity=0.135 Sum_probs=56.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--CCCCCeeEEEEcCCCccccCCcc--chHHHHHHHH
Q psy19 337 FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--FKPACVDGIVTDLPFGKRVGSKS--NNFLLYRLFL 412 (494)
Q Consensus 337 ~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~~~~~~D~IVtNPPYG~r~~~~~--~~~~ly~~fL 412 (494)
+|+|+||.++|++.+++.++..++ ..++.+++.+=..+. .+.+.+|++|.|.=|--. +++. ...+---..+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~----~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPg-gDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL----EDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPG-GDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CT-S-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC----CCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCC-CCCCCCcCcHHHHHHH
Confidence 589999999999999999998765 456788776655542 222489999999877221 1110 1122223466
Q ss_pred HHHhhcccCCCcEEEEEec
Q psy19 413 IEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 413 ~~l~rvLkpg~G~lvllt~ 431 (494)
+.+.++|+|| |.+.+++.
T Consensus 76 ~~al~lL~~g-G~i~iv~Y 93 (140)
T PF06962_consen 76 EAALELLKPG-GIITIVVY 93 (140)
T ss_dssp HHHHHHEEEE-EEEEEEE-
T ss_pred HHHHHhhccC-CEEEEEEe
Confidence 7799999999 98877543
No 245
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.17 E-value=0.003 Score=63.55 Aligned_cols=104 Identities=17% Similarity=0.121 Sum_probs=72.2
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhcc----C------------------------C-
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNS----G------------------------N- 361 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g----~------------------------~- 361 (494)
...+||-||||.|.++.|.|.. +-.+.|.|.+--|+-...--+.... . .
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4578999999999999999998 7789999999999776655333200 0 0
Q ss_pred ------CCcccceeeeeeccccccCCC---CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcE
Q psy19 362 ------LNRELKVSPLVCNVRQLCFKP---ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGR 425 (494)
Q Consensus 362 ------~~~~~~i~~~~~Da~~l~~~~---~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~ 425 (494)
......+.+..+|+.++...+ +.+|.|||. |. +.+..++ + ..++.+.++|||| |.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~--FF--IDTA~Ni---~-~Yi~tI~~lLkpg-G~ 197 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC--FF--IDTAENI---I-EYIETIEHLLKPG-GY 197 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE--EE--eechHHH---H-HHHHHHHHHhccC-CE
Confidence 001124566778888874433 689999996 43 3333333 2 4566899999999 73
No 246
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.16 E-value=0.0012 Score=59.10 Aligned_cols=59 Identities=15% Similarity=-0.029 Sum_probs=49.1
Q ss_pred EEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
+++|.|||.|.+++.++..++..+++++|.++.+++.+++|+..+++ .++.+.+..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~-----~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL-----PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC-----CcEEEEEeeeeC
Confidence 48999999999999999888777999999999999999999998764 125666655543
No 247
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.12 E-value=0.0016 Score=65.70 Aligned_cols=67 Identities=21% Similarity=0.327 Sum_probs=58.5
Q ss_pred ccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhc
Q psy19 289 EFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN 358 (494)
Q Consensus 289 ~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~ 358 (494)
..+|+.....+...++.+ .-.+++.|+|||+||||.++.|... +..++|+|+++.-++.+..-+...
T Consensus 201 ~~hp~~~P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~--~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 201 KLHPAQKPLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNL--GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCChHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHc--CCceEEEecCHHHHHHHHHHHHhh
Confidence 346888899999998888 5568999999999999999998877 678999999999999999888753
No 248
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.11 E-value=0.0015 Score=61.36 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--------CC
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--------FK 381 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--------~~ 381 (494)
++.++||+||+.|++.-.++... +...++|+|+.+.. .. ..+..+++|+.+.. +.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---------------~~-~~~~~i~~d~~~~~~~~~i~~~~~ 86 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---------------PL-QNVSFIQGDITNPENIKDIRKLLP 86 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---------------S--TTEEBTTGGGEEEEHSHHGGGSHG
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc---------------cc-cceeeeecccchhhHHHhhhhhcc
Confidence 45899999999999998877764 35799999998861 00 12345556654321 11
Q ss_pred --CCCeeEEEEcC-C-C-ccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 382 --PACVDGIVTDL-P-F-GKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 382 --~~~~D~IVtNP-P-Y-G~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
...+|+|++|. | . |.+.........+....+.-+...|+|| |.+++-+
T Consensus 87 ~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~g-G~~v~K~ 139 (181)
T PF01728_consen 87 ESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPG-GTFVIKV 139 (181)
T ss_dssp TTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTT-EEEEEEE
T ss_pred ccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCC-CEEEEEe
Confidence 25899999997 2 1 1111112222344444555677889999 9887744
No 249
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.011 Score=56.99 Aligned_cols=117 Identities=21% Similarity=0.191 Sum_probs=79.5
Q ss_pred chHHHHHHHHHHhC----CCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCccccee
Q psy19 295 LKPTIAYNMVRLAS----PIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369 (494)
Q Consensus 295 L~e~lAa~ll~la~----~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~ 369 (494)
.+..-|+-|+++.. .+++..|+|+||--|+-+-.|+... +...|+|+|+.|-. .+ ..+.
T Consensus 25 yRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------------~~-~~V~ 88 (205)
T COG0293 25 YRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------------PI-PGVI 88 (205)
T ss_pred ccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------------cC-CCce
Confidence 34455666666653 3688999999999999999888763 33559999999843 22 2368
Q ss_pred eeeecccccc--------CCCCCeeEEEEcCCC---ccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 370 PLVCNVRQLC--------FKPACVDGIVTDLPF---GKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 370 ~~~~Da~~l~--------~~~~~~D~IVtNPPY---G~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
++++|++.-+ +....+|+|++|+-= |.+..++.....|-...+.-+..+|+|| |.+++
T Consensus 89 ~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~-G~fv~ 157 (205)
T COG0293 89 FLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPG-GSFVA 157 (205)
T ss_pred EEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCC-CeEEE
Confidence 9999987653 223357999998632 2222222334455556677788899999 87775
No 250
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.09 E-value=0.0043 Score=64.06 Aligned_cols=163 Identities=15% Similarity=0.110 Sum_probs=104.0
Q ss_pred CCCCEEEEEEEecCcceecccccccccccc-cccccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCC
Q psy19 256 DDYDIDINLQIRYNEAYVGLPVTQTSLHRR-NIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYP 334 (494)
Q Consensus 256 ~~pdi~i~v~l~~~~~~l~l~lsg~sL~~R-gy~~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~ 334 (494)
..|=.+|.+.-.++...++++-.= -+..| .||+ + |++.. ..+...+.-.+||=+|-|.|--+-|..+ +|
T Consensus 242 qspYQ~iVvTr~g~d~rLYldG~L-QfsTrDe~RY-h-----EsLV~--pals~~~~a~~vLvlGGGDGLAlRellk-yP 311 (508)
T COG4262 242 QSPYQRIVVTRRGDDLRLYLDGGL-QFSTRDEYRY-H-----ESLVY--PALSSVRGARSVLVLGGGDGLALRELLK-YP 311 (508)
T ss_pred cCccceEEEEEecCceEEEEcCce-eeeechhhhh-h-----heeee--cccccccccceEEEEcCCchHHHHHHHh-CC
Confidence 345566777766777776665321 11111 2221 1 11110 0122334567899999999987777654 56
Q ss_pred -CCeEEEEeCCHHHHHHHHHHHHhccCCCC--cccceeeeeecccccc-CCCCCeeEEEEcCCCccccCCccchHHHHH-
Q psy19 335 -HTFFVCGDINEKLVLKTQANVLHNSGNLN--RELKVSPLVCNVRQLC-FKPACVDGIVTDLPFGKRVGSKSNNFLLYR- 409 (494)
Q Consensus 335 -~~~v~G~Did~~al~~Ar~Nl~~~g~~~~--~~~~i~~~~~Da~~l~-~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~- 409 (494)
-.+|+-+|+||+|++.++.|.....+|.+ ...++.++..|++++- -....||.||.|.|=-.. ..+..+|.
T Consensus 312 ~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~t----ps~~rlYS~ 387 (508)
T COG4262 312 QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPST----PSIGRLYSV 387 (508)
T ss_pred CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCC----cchhhhhhH
Confidence 46899999999999999977654433332 2457889999998872 223589999999883321 22344554
Q ss_pred HHHHHHhhcccCCCcEEEEEecCH
Q psy19 410 LFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 410 ~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
.|...+.+.|+++ |.+++-.++.
T Consensus 388 eFY~ll~~~l~e~-Gl~VvQags~ 410 (508)
T COG4262 388 EFYRLLSRHLAET-GLMVVQAGSP 410 (508)
T ss_pred HHHHHHHHhcCcC-ceEEEecCCC
Confidence 3556788999998 9988866554
No 251
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.08 E-value=0.0015 Score=63.51 Aligned_cols=82 Identities=20% Similarity=0.159 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCcChH-HHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhc-cCCCCcccceeeee-eccccc-c---CCCC
Q psy19 311 PGDVFLDPMCGGGTI-PVECSLSYPHTFFVCGDINEKLVLKTQANVLHN-SGNLNRELKVSPLV-CNVRQL-C---FKPA 383 (494)
Q Consensus 311 ~g~~VLDP~CGSGti-lIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~-g~~~~~~~~i~~~~-~Da~~l-~---~~~~ 383 (494)
++.++||+|.|.-.| ++-...++ +-+.+|.|||+.+++.|+.++..| ++ ...+.+.. .|-..+ + -..+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l----~~~I~lr~qk~~~~if~giig~nE 152 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGL----ERAIRLRRQKDSDAIFNGIIGKNE 152 (292)
T ss_pred CceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcch----hhheeEEeccCccccccccccccc
Confidence 567899998887665 22222222 457899999999999999999987 33 33334332 333322 1 1246
Q ss_pred CeeEEEEcCCCccc
Q psy19 384 CVDGIVTDLPFGKR 397 (494)
Q Consensus 384 ~~D~IVtNPPYG~r 397 (494)
.||+.+|||||...
T Consensus 153 ~yd~tlCNPPFh~s 166 (292)
T COG3129 153 RYDATLCNPPFHDS 166 (292)
T ss_pred eeeeEecCCCcchh
Confidence 89999999999543
No 252
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.05 E-value=0.0034 Score=56.84 Aligned_cols=65 Identities=20% Similarity=0.147 Sum_probs=50.1
Q ss_pred CCCCEEEEEcCCcChHHHHHHh-----cCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 310 IPGDVFLDPMCGGGTIPVECSL-----SYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~-----~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
.+...|+|.|||-|.++..++. . ++..|+|+|.++..++.|....+..+. .....+.+..++...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGS--DLEKRLSFIQGDIAD 93 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcc--hhhccchhhccchhh
Confidence 6778999999999999998888 4 578999999999999999998887652 122334455554443
No 253
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.04 E-value=0.028 Score=54.60 Aligned_cols=148 Identities=16% Similarity=0.173 Sum_probs=102.5
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC-CCCeeEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK-PACVDGI 388 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~-~~~~D~I 388 (494)
+.+..+.|+||=-|.+++.+....+...++++|+++..++.|.+|+..+++ ..+++...+|-... +. +..+|+|
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l----~~~i~vr~~dgl~~-l~~~d~~d~i 89 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL----SERIDVRLGDGLAV-LELEDEIDVI 89 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC----cceEEEeccCCccc-cCccCCcCEE
Confidence 356669999999999999999988888999999999999999999998865 56778888887443 32 2367866
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC--HHHHHHHHHhccccceeeeeEEEccCCceEEEEE
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD--RKHLIQALHITSALWKCRKQIKINMSGMKSFVFI 466 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~--~~~l~~~l~~~~~l~~~~~~~~v~~Ggl~~~i~v 466 (494)
+. -.+| ..+...+|++..+.|+.- -+ .++.|+ ...+++-+...+ |.......+.-.+.--.|.+
T Consensus 90 vI-----AGMG-----G~lI~~ILee~~~~l~~~-~r-lILQPn~~~~~LR~~L~~~~--~~I~~E~ileE~~kiYEIlv 155 (226)
T COG2384 90 VI-----AGMG-----GTLIREILEEGKEKLKGV-ER-LILQPNIHTYELREWLSANS--YEIKAETILEEDGKIYEILV 155 (226)
T ss_pred EE-----eCCc-----HHHHHHHHHHhhhhhcCc-ce-EEECCCCCHHHHHHHHHhCC--ceeeeeeeecccCeEEEEEE
Confidence 54 0222 345777888888888632 23 445553 344677777666 55555554444344346667
Q ss_pred EeeCCCCCCC
Q psy19 467 LNRTADLFDY 476 (494)
Q Consensus 467 ~~~~~~~~d~ 476 (494)
.++...++..
T Consensus 156 ~e~~~~~~~~ 165 (226)
T COG2384 156 VEKSSKPALY 165 (226)
T ss_pred EecCCchhhh
Confidence 7776644444
No 254
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.98 E-value=0.0018 Score=63.60 Aligned_cols=96 Identities=11% Similarity=0.035 Sum_probs=55.9
Q ss_pred HHHHhCCCCCC--EEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCc----ccceeeeeeccc
Q psy19 303 MVRLASPIPGD--VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNR----ELKVSPLVCNVR 376 (494)
Q Consensus 303 ll~la~~~~g~--~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~----~~~i~~~~~Da~ 376 (494)
|+..++.+++. +|||.-||-|.=++-+|.. |++|+|+|.+|-+..+.+.-++.+.-.... ..+++++++|+.
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~ 142 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDAL 142 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CC
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHH
Confidence 44456666664 8999999999988887766 789999999998877766555443211111 247889999988
Q ss_pred cc-cCCCCCeeEEEEcCCCccccCC
Q psy19 377 QL-CFKPACVDGIVTDLPFGKRVGS 400 (494)
Q Consensus 377 ~l-~~~~~~~D~IVtNPPYG~r~~~ 400 (494)
++ ..++.+||+|..||-|..+...
T Consensus 143 ~~L~~~~~s~DVVY~DPMFp~~~ks 167 (234)
T PF04445_consen 143 EYLRQPDNSFDVVYFDPMFPERKKS 167 (234)
T ss_dssp CHCCCHSS--SEEEE--S-----TT
T ss_pred HHHhhcCCCCCEEEECCCCCCcccc
Confidence 75 4335799999999999876543
No 255
>PRK00536 speE spermidine synthase; Provisional
Probab=96.97 E-value=0.013 Score=58.72 Aligned_cols=128 Identities=9% Similarity=-0.068 Sum_probs=80.5
Q ss_pred HhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCe
Q psy19 306 LASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACV 385 (494)
Q Consensus 306 la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~ 385 (494)
++.+. ..+||=+|-|-|..+-|.++ ++. +|..+|||+++++.+++-+-..... --..+++++.. +. ....++|
T Consensus 68 ~~h~~-pk~VLIiGGGDGg~~REvLk-h~~-~v~mVeID~~Vv~~~k~~lP~~~~~-~~DpRv~l~~~-~~--~~~~~~f 140 (262)
T PRK00536 68 CTKKE-LKEVLIVDGFDLELAHQLFK-YDT-HVDFVQADEKILDSFISFFPHFHEV-KNNKNFTHAKQ-LL--DLDIKKY 140 (262)
T ss_pred hhCCC-CCeEEEEcCCchHHHHHHHC-cCC-eeEEEECCHHHHHHHHHHCHHHHHh-hcCCCEEEeeh-hh--hccCCcC
Confidence 34443 46899999999999999876 454 9999999999999999944332110 11245555541 21 1123689
Q ss_pred eEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC----HHHHHHHHHhccccceeeeeEE
Q psy19 386 DGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD----RKHLIQALHITSALWKCRKQIK 454 (494)
Q Consensus 386 D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~----~~~l~~~l~~~~~l~~~~~~~~ 454 (494)
|+||+|-.|. .+.| +.+.+.|+|+ |.++.=+.+ ...+.......+..+.....+.
T Consensus 141 DVIIvDs~~~---------~~fy----~~~~~~L~~~-Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y~ 199 (262)
T PRK00536 141 DLIICLQEPD---------IHKI----DGLKRMLKED-GVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPFV 199 (262)
T ss_pred CEEEEcCCCC---------hHHH----HHHHHhcCCC-cEEEECCCCcccCHHHHHHHHHHHHhhCCceEEEE
Confidence 9999995432 2334 4799999999 988774332 3334444444333334344443
No 256
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.94 E-value=0.017 Score=56.32 Aligned_cols=120 Identities=15% Similarity=0.201 Sum_probs=78.6
Q ss_pred ccchHHHHHHHHHHh---CCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccce
Q psy19 293 TTLKPTIAYNMVRLA---SPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKV 368 (494)
Q Consensus 293 a~L~e~lAa~ll~la---~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i 368 (494)
.|-+..|||+++.-. ..++|.+||-+|+.|||..--.+-. .+...|+|++.++...+..-.-++. ..++
T Consensus 52 ~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-------R~NI 124 (229)
T PF01269_consen 52 NPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-------RPNI 124 (229)
T ss_dssp -TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-------STTE
T ss_pred CchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-------CCce
Confidence 468899999997643 3578999999999999998877765 4467999999999887666544442 2345
Q ss_pred eeeeecccccc-C--CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 369 SPLVCNVRQLC-F--KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 369 ~~~~~Da~~l~-~--~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
-.+-.|++... . --+.+|+|++|-. ..... +-++..+..+||+| |.+++..
T Consensus 125 iPIl~DAr~P~~Y~~lv~~VDvI~~DVa------Qp~Qa----~I~~~Na~~fLk~g-G~~~i~i 178 (229)
T PF01269_consen 125 IPILEDARHPEKYRMLVEMVDVIFQDVA------QPDQA----RIAALNARHFLKPG-GHLIISI 178 (229)
T ss_dssp EEEES-TTSGGGGTTTS--EEEEEEE-S------STTHH----HHHHHHHHHHEEEE-EEEEEEE
T ss_pred eeeeccCCChHHhhcccccccEEEecCC------ChHHH----HHHHHHHHhhccCC-cEEEEEE
Confidence 56788998652 1 1258999999853 22221 23344677799999 8877653
No 257
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=96.90 E-value=0.0011 Score=57.33 Aligned_cols=48 Identities=19% Similarity=0.238 Sum_probs=37.8
Q ss_pred CeeEEEEcCCCccccCCcc------chHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 384 CVDGIVTDLPFGKRVGSKS------NNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 384 ~~D~IVtNPPYG~r~~~~~------~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
.||+||.||||+....... ...++|.-|++...++| + |.+.+++|+.-
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll--~-G~~~~I~P~~~ 55 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLL--N-GYLSFITPNSF 55 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHh--C-CeEEEEeChHH
Confidence 5899999999986542211 23568999999999988 7 99999999864
No 258
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.89 E-value=0.017 Score=48.72 Aligned_cols=102 Identities=21% Similarity=0.202 Sum_probs=65.6
Q ss_pred EEEEcCCcChHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc--ccCCC-CCeeEEEE
Q psy19 315 FLDPMCGGGTIPVECSLSYP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ--LCFKP-ACVDGIVT 390 (494)
Q Consensus 315 VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~--l~~~~-~~~D~IVt 390 (494)
++|.+||+|... .++...+ ...++|+|+++.++..++......+. . .+.+...|... +++.. ..+|++..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~d~~~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL----G-LVDFVVADALGGVLPFEDSASFDLVIS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC----C-ceEEEEeccccCCCCCCCCCceeEEee
Confidence 999999999865 2222211 14788999999999996555432111 0 04677777765 56655 37999855
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
...+... . ....+.++.++|+|+ |.+.+....
T Consensus 126 ~~~~~~~-----~----~~~~~~~~~~~l~~~-g~~~~~~~~ 157 (257)
T COG0500 126 LLVLHLL-----P----PAKALRELLRVLKPG-GRLVLSDLL 157 (257)
T ss_pred eeehhcC-----C----HHHHHHHHHHhcCCC-cEEEEEecc
Confidence 3332211 0 235566799999998 988776554
No 259
>KOG2198|consensus
Probab=96.82 E-value=0.013 Score=60.90 Aligned_cols=131 Identities=16% Similarity=0.140 Sum_probs=85.6
Q ss_pred hCCCCCCEEEEEcCCcChH---HHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC--
Q psy19 307 ASPIPGDVFLDPMCGGGTI---PVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF-- 380 (494)
Q Consensus 307 a~~~~g~~VLDP~CGSGti---lIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~-- 380 (494)
.++++|++|||.|+--|+= ++|++.. |....+++-|.|+.-+...+.-+.... ...+.+.+.|+...|-
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-----~~~~~v~~~~~~~~p~~~ 225 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-----SPNLLVTNHDASLFPNIY 225 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-----Ccceeeecccceeccccc
Confidence 5779999999999988854 3555543 223489999999998888877775432 1223344444443321
Q ss_pred -------CCCCeeEEEEcCCCccccCCc----------------cchHHHHHHHHHHHhhcccCCCcEEEEEecC-----
Q psy19 381 -------KPACVDGIVTDLPFGKRVGSK----------------SNNFLLYRLFLIEIGKIVRPQIGRAILLTSD----- 432 (494)
Q Consensus 381 -------~~~~~D~IVtNPPYG~r~~~~----------------~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~----- 432 (494)
....||-|++|=|=..- +.. .++..+--.+|....++||+| |++|.-|++
T Consensus 226 ~~~~~~~~~~~fDrVLvDVPCS~D-gt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~G-G~lVYSTCSLnpie 303 (375)
T KOG2198|consen 226 LKDGNDKEQLKFDRVLVDVPCSGD-GTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVG-GRLVYSTCSLNPIE 303 (375)
T ss_pred cccCchhhhhhcceeEEecccCCC-cccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCC-CEEEEeccCCCchh
Confidence 12379999999995211 111 234455567888999999999 999998883
Q ss_pred -HHHHHHHHHhcc
Q psy19 433 -RKHLIQALHITS 444 (494)
Q Consensus 433 -~~~l~~~l~~~~ 444 (494)
...+..++...+
T Consensus 304 NEaVV~~~L~~~~ 316 (375)
T KOG2198|consen 304 NEAVVQEALQKVG 316 (375)
T ss_pred hHHHHHHHHHHhc
Confidence 233455565543
No 260
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.79 E-value=0.022 Score=55.41 Aligned_cols=97 Identities=11% Similarity=0.023 Sum_probs=73.3
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCC-eeEEEE
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPAC-VDGIVT 390 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~-~D~IVt 390 (494)
+.+++|+|+|.|--+|-.|..+|+..++-+|...+-+.--+.-....++ .++.++++.+.++... .. ||+|.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-----~nv~i~~~RaE~~~~~-~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-----ENVEIVHGRAEEFGQE-KKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-----CCeEEehhhHhhcccc-cccCcEEEe
Confidence 5799999999999999999889999999999999888887777776654 3467888888877422 23 999988
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEE
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAI 427 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lv 427 (494)
|.-. .+. .++.-...++++| |.++
T Consensus 142 ------RAva--~L~----~l~e~~~pllk~~-g~~~ 165 (215)
T COG0357 142 ------RAVA--SLN----VLLELCLPLLKVG-GGFL 165 (215)
T ss_pred ------ehcc--chH----HHHHHHHHhcccC-Ccch
Confidence 4322 232 3334577788998 7654
No 261
>KOG1253|consensus
Probab=96.61 E-value=0.0026 Score=67.98 Aligned_cols=108 Identities=24% Similarity=0.229 Sum_probs=83.7
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC----CCC
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLSYPH-TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF----KPA 383 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~~~~-~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~----~~~ 383 (494)
-.++-+|||.+|+||--+|.-|...++ ..+++.|.++.++...++|++.+++ .+.+...+.|+..+.. ...
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v----~~ive~~~~DA~~lM~~~~~~~~ 182 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV----EDIVEPHHSDANVLMYEHPMVAK 182 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc----hhhcccccchHHHHHHhcccccc
Confidence 346778999999999998888877665 3688999999999999999998864 5567788889877632 235
Q ss_pred CeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 384 CVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 384 ~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
.||+|=.|| ||.-. .||..+.+-++.| |.+.+-+.|.
T Consensus 183 ~FDvIDLDP-yGs~s-----------~FLDsAvqav~~g-GLL~vT~TD~ 219 (525)
T KOG1253|consen 183 FFDVIDLDP-YGSPS-----------PFLDSAVQAVRDG-GLLCVTCTDM 219 (525)
T ss_pred ccceEecCC-CCCcc-----------HHHHHHHHHhhcC-CEEEEEecch
Confidence 899999995 87432 5677788888887 8766654443
No 262
>KOG1709|consensus
Probab=96.58 E-value=0.035 Score=53.78 Aligned_cols=164 Identities=15% Similarity=0.113 Sum_probs=107.5
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
..|+-+.+|+++. ..|.+||..|-|.|-+..-.-..-| ...+-++-+|..++..+.+.-.- ..++.++
T Consensus 87 EtpiMha~A~ai~-----tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~e------k~nViil 154 (271)
T KOG1709|consen 87 ETPIMHALAEAIS-----TKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWRE------KENVIIL 154 (271)
T ss_pred hhHHHHHHHHHHh-----hCCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhccccc------ccceEEE
Confidence 3456666676665 4788999999999976554333333 46677899999999999886521 2344555
Q ss_pred eeccccc--cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE---ecCHHHHHHHHHhcccc
Q psy19 372 VCNVRQL--CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL---TSDRKHLIQALHITSAL 446 (494)
Q Consensus 372 ~~Da~~l--~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll---t~~~~~l~~~l~~~~~l 446 (494)
.+-..+. .++++.||.|.-|- |+.. -+++..++ +.+.++|||+ |.+-+. ..+...+-+.
T Consensus 155 ~g~WeDvl~~L~d~~FDGI~yDT-y~e~---yEdl~~~h----qh~~rLLkP~-gv~SyfNg~~~~~~~~~~v------- 218 (271)
T KOG1709|consen 155 EGRWEDVLNTLPDKHFDGIYYDT-YSEL---YEDLRHFH----QHVVRLLKPE-GVFSYFNGLGADNLMFYDV------- 218 (271)
T ss_pred ecchHhhhccccccCcceeEeec-hhhH---HHHHHHHH----HHHhhhcCCC-ceEEEecCcccchhhhhhh-------
Confidence 5543333 35677899999873 3322 23444444 4899999999 876653 2233322222
Q ss_pred ceeeeeEEEccCCceEEEEEEeeCCCCCCCcccCccC
Q psy19 447 WKCRKQIKINMSGMKSFVFILNRTADLFDYAIHGLKE 483 (494)
Q Consensus 447 ~~~~~~~~v~~Ggl~~~i~v~~~~~~~~d~~~~~~~~ 483 (494)
.+..-.+.+.+-|+.|.+.-.....|-.++-|.+++-
T Consensus 219 y~~lV~iev~~~g~~~~l~~~~v~~~l~de~w~~vk~ 255 (271)
T KOG1709|consen 219 YKILVMIEVATYGVPCTLEPGPVDEQLGDELWNGVKR 255 (271)
T ss_pred hheeEEEEeecCCCceeeeccccccccchhhhcchhh
Confidence 2334456667779999998888888888888876543
No 263
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.56 E-value=0.03 Score=57.76 Aligned_cols=123 Identities=11% Similarity=0.074 Sum_probs=76.0
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChH---HHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTI---PVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGti---lIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
+-..-+..|+... .++..|+|+|||+|+= ++++... ......+++||+..+++.+..++..... + .-.+.-
T Consensus 62 iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~--p-~l~v~~ 136 (319)
T TIGR03439 62 ILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF--S-HVRCAG 136 (319)
T ss_pred HHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC--C-CeEEEE
Confidence 3344455555544 3567899999999964 4444332 2246789999999999999999983211 1 123445
Q ss_pred eeeccccc----cCC--CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhh-cccCCCcEEEE
Q psy19 371 LVCNVRQL----CFK--PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGK-IVRPQIGRAIL 428 (494)
Q Consensus 371 ~~~Da~~l----~~~--~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~r-vLkpg~G~lvl 428 (494)
+++|+.+. +-+ .....+++. .|..+|.... .--..||+.+.+ .|+|| +.+.+
T Consensus 137 l~gdy~~~l~~l~~~~~~~~~r~~~f---lGSsiGNf~~--~ea~~fL~~~~~~~l~~~-d~lLi 195 (319)
T TIGR03439 137 LLGTYDDGLAWLKRPENRSRPTTILW---LGSSIGNFSR--PEAAAFLAGFLATALSPS-DSFLI 195 (319)
T ss_pred EEecHHHHHhhcccccccCCccEEEE---eCccccCCCH--HHHHHHHHHHHHhhCCCC-CEEEE
Confidence 78888653 111 122444444 2445554322 223468889999 99998 87766
No 264
>KOG3115|consensus
Probab=96.52 E-value=0.0058 Score=58.53 Aligned_cols=117 Identities=18% Similarity=0.190 Sum_probs=76.0
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCC--Ccccceeeeeeccccc-c--CCCC--C
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNL--NRELKVSPLVCNVRQL-C--FKPA--C 384 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~--~~~~~i~~~~~Da~~l-~--~~~~--~ 384 (494)
...+.|+|||-|+++++++-.+|+.-++|.+|--+.-+..+..+.+.+... +...++.+...++... | +..+ +
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 356999999999999999999999999999999988888888777654211 1123455666665543 2 1112 1
Q ss_pred eeE-EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 385 VDG-IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 385 ~D~-IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
-+. ..-||=|-.+.... .-+-..++.+.+.+|++| |.++.+|.-
T Consensus 141 kmff~fpdpHfk~~khk~---rii~~~l~~eyay~l~~g-g~~ytitDv 185 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKW---RIITSTLLSEYAYVLREG-GILYTITDV 185 (249)
T ss_pred cceeecCChhHhhhhccc---eeechhHHHHHHhhhhcC-ceEEEEeeH
Confidence 222 22344444332211 112334666788899999 998888763
No 265
>KOG2078|consensus
Probab=96.47 E-value=0.0014 Score=68.64 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=54.1
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
++|+.|+|+|||.|-+.+.|+.. +++|++.|.+|++++..+.|+..+.+. ...+.+.+.|+...
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~---~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVD---PSAIEIFNMDAKDF 311 (495)
T ss_pred CCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccc---hhheeeecccHHHH
Confidence 68999999999999999999987 799999999999999999999977552 22367777776543
No 266
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.37 E-value=0.029 Score=55.95 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=60.2
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
...++||+|+|.|.+....+..+ ..|++.|+++.|.... +..|. +++ |..++.-.+..||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL----~~kg~--------~vl--~~~~w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRL----SKKGF--------TVL--DIDDWQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHH----HhCCC--------eEE--ehhhhhccCCceEEEee
Confidence 34679999999999999888875 4699999999984443 33332 122 22223222357999988
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
-= -+..... -..+|+++.+.|+|+ |++++
T Consensus 158 LN----vLDRc~~----P~~LL~~i~~~l~p~-G~lil 186 (265)
T PF05219_consen 158 LN----VLDRCDR----PLTLLRDIRRALKPN-GRLIL 186 (265)
T ss_pred hh----hhhccCC----HHHHHHHHHHHhCCC-CEEEE
Confidence 10 0111111 125667899999998 98765
No 267
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.32 E-value=0.0089 Score=60.55 Aligned_cols=94 Identities=20% Similarity=0.267 Sum_probs=58.1
Q ss_pred EEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc---CCCCCeeEEEE
Q psy19 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC---FKPACVDGIVT 390 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~---~~~~~~D~IVt 390 (494)
+++|+|||.|++.+-+.... ...++++|+|+.+++..+.|.. ....+|+.++. ++. .+|+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~------------~~~~~Di~~~~~~~l~~-~~D~l~g 67 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP------------EVICGDITEIDPSDLPK-DVDLLIG 67 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT------------EEEESHGGGCHHHHHHH-T-SEEEE
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc------------ccccccccccccccccc-cceEEEe
Confidence 68999999999987665552 2467899999999999999986 24556666653 332 5999999
Q ss_pred cCC---C---ccccCCccchHHHHHHHHHHHhhcccCC
Q psy19 391 DLP---F---GKRVGSKSNNFLLYRLFLIEIGKIVRPQ 422 (494)
Q Consensus 391 NPP---Y---G~r~~~~~~~~~ly~~fL~~l~rvLkpg 422 (494)
-|| | |.+.+....-..|+..+++-+ +.++|.
T Consensus 68 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~Pk 104 (335)
T PF00145_consen 68 GPPCQGFSIAGKRKGFDDPRNSLFFEFLRIV-KELKPK 104 (335)
T ss_dssp E---TTTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS-S
T ss_pred ccCCceEeccccccccccccchhhHHHHHHH-hhccce
Confidence 999 3 222222112224565555533 456787
No 268
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.25 E-value=0.0028 Score=68.08 Aligned_cols=96 Identities=19% Similarity=0.181 Sum_probs=60.1
Q ss_pred CEEEEEcCCcChHHHHHHhcCCCCeEEEE---eCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCG---DINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~~~~~v~G~---Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
-++||.|||+|+|+..+..+ ++.++.+ |.++..++.|.+. |+. . -+...-...+|+++++||+|=
T Consensus 119 R~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleR----Gvp----a--~~~~~~s~rLPfp~~~fDmvH 186 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALER----GVP----A--MIGVLGSQRLPFPSNAFDMVH 186 (506)
T ss_pred EEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhc----Ccc----h--hhhhhccccccCCccchhhhh
Confidence 36999999999998776655 4444333 5666666666542 221 1 111223567899999999985
Q ss_pred E---cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 390 T---DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 390 t---NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
| .-||...- . .+|-++-|+|||| |.+++..+
T Consensus 187 csrc~i~W~~~~-----g-----~~l~evdRvLRpG-Gyfv~S~p 220 (506)
T PF03141_consen 187 CSRCLIPWHPND-----G-----FLLFEVDRVLRPG-GYFVLSGP 220 (506)
T ss_pred cccccccchhcc-----c-----ceeehhhhhhccC-ceEEecCC
Confidence 5 22333211 1 2444799999999 98777544
No 269
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.22 E-value=0.028 Score=57.06 Aligned_cols=91 Identities=21% Similarity=0.308 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPH-TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 296 ~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~-~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
-+.|...++.+..++++...+|.--|.|+.+-......+. .+++|+|.|+.|++.|++.+..+ .+++.+++..
T Consensus 8 ipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~------~~r~~~v~~~ 81 (314)
T COG0275 8 IPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF------DGRVTLVHGN 81 (314)
T ss_pred cchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc------CCcEEEEeCc
Confidence 3456667777788889999999999999999888877654 56999999999999999999854 3467888888
Q ss_pred ccccc-----CCCCCeeEEEEcC
Q psy19 375 VRQLC-----FKPACVDGIVTDL 392 (494)
Q Consensus 375 a~~l~-----~~~~~~D~IVtNP 392 (494)
+.++. ...+.+|.|+.|.
T Consensus 82 F~~l~~~l~~~~i~~vDGiL~DL 104 (314)
T COG0275 82 FANLAEALKELGIGKVDGILLDL 104 (314)
T ss_pred HHHHHHHHHhcCCCceeEEEEec
Confidence 77662 1235788888874
No 270
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.16 E-value=0.005 Score=58.83 Aligned_cols=48 Identities=25% Similarity=0.418 Sum_probs=31.8
Q ss_pred eeEEEEcCCCccccC---C--------ccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 385 VDGIVTDLPFGKRVG---S--------KSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 385 ~D~IVtNPPYG~r~~---~--------~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
+|+|++||||+.... . ..+-...+..++.++.|+|+|+ |.+++.+.+.
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~-g~~~i~~~~~ 59 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPG-GSIFIFIDDR 59 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEE-CC
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCC-eeEEEEecch
Confidence 699999999986554 0 0122344567888999999999 9988877754
No 271
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.07 E-value=0.086 Score=50.70 Aligned_cols=118 Identities=11% Similarity=0.070 Sum_probs=84.7
Q ss_pred ccchHHHHHHHHHHh---CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCccccee
Q psy19 293 TTLKPTIAYNMVRLA---SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVS 369 (494)
Q Consensus 293 a~L~e~lAa~ll~la---~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~ 369 (494)
.|-|..|||+++.=. ..++|..||=+|+-|||..--.+-.-+...++|++.+++..+-...-++.. .++-
T Consensus 55 np~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-------~Ni~ 127 (231)
T COG1889 55 NPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-------PNII 127 (231)
T ss_pred CcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-------CCce
Confidence 467899999998744 357899999999999999988887766678999999999887766555532 2345
Q ss_pred eeeecccccc---CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 370 PLVCNVRQLC---FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 370 ~~~~Da~~l~---~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
.+.+|++... .--+.+|+|..|- ..... . +-+...+..+|+++ |.+++
T Consensus 128 PIL~DA~~P~~Y~~~Ve~VDviy~DV------AQp~Q-a---~I~~~Na~~FLk~~-G~~~i 178 (231)
T COG1889 128 PILEDARKPEKYRHLVEKVDVIYQDV------AQPNQ-A---EILADNAEFFLKKG-GYVVI 178 (231)
T ss_pred eeecccCCcHHhhhhcccccEEEEec------CCchH-H---HHHHHHHHHhcccC-CeEEE
Confidence 6778988642 1124699999974 22222 1 22334678899998 76554
No 272
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.03 E-value=1 Score=45.14 Aligned_cols=127 Identities=13% Similarity=0.026 Sum_probs=84.1
Q ss_pred CCCCCCCCEEEEEE-EecCcceeccccccc-ccccccc-c--ccccccchHHHH--HHHHHHh-------CCCCCCEEEE
Q psy19 252 LVDLDDYDIDINLQ-IRYNEAYVGLPVTQT-SLHRRNI-V--EFNITTLKPTIA--YNMVRLA-------SPIPGDVFLD 317 (494)
Q Consensus 252 ~vdl~~pdi~i~v~-l~~~~~~l~l~lsg~-sL~~Rgy-~--~~~~a~L~e~lA--a~ll~la-------~~~~g~~VLD 317 (494)
+.+.+.+-..+++. +.++.|++|+.-+.. +.+.=|. | +...||-+.+|- .+++.+. +..+|..-+|
T Consensus 138 s~~~~~~~p~lhv~f~~~~~cyvGysy~~n~s~~~mGIPRLKfp~dAPSRStLKLEEA~~tfip~~E~~~rL~~~M~avD 217 (358)
T COG2933 138 SAYEHPKRPVLHVFFIAPGCCYVGYSYSNNNSPFYMGIPRLKFPADAPSRSTLKLEEAFHTFIPRDEWDKRLAPGMWAVD 217 (358)
T ss_pred ccccCCCCcEEEEEEEcCCeEEEeecccCCCCccccCCccccCCCCCCchhhhhHHHHHHHhcChhhhhhhhcCCceeee
Confidence 34444444455554 578899999887753 4555554 2 445677777653 3333332 2358999999
Q ss_pred EcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcC
Q psy19 318 PMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDL 392 (494)
Q Consensus 318 P~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNP 392 (494)
+|+-.|+-.-....+ +..|+++|.-+-+ .++...| .++-...|-+...+....+|++|||+
T Consensus 218 LGAcPGGWTyqLVkr--~m~V~aVDng~ma-----~sL~dtg-------~v~h~r~DGfk~~P~r~~idWmVCDm 278 (358)
T COG2933 218 LGACPGGWTYQLVKR--NMRVYAVDNGPMA-----QSLMDTG-------QVTHLREDGFKFRPTRSNIDWMVCDM 278 (358)
T ss_pred cccCCCccchhhhhc--ceEEEEeccchhh-----hhhhccc-------ceeeeeccCcccccCCCCCceEEeeh
Confidence 999999887777666 6789999987754 3444322 35666778887744346899999986
No 273
>KOG1331|consensus
Probab=95.56 E-value=0.016 Score=58.33 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=70.1
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
.|..++|.+||-|-.+. ..|.+.++|.|+....+..|++- + ...+..+|+..+|+++.+||.+++
T Consensus 45 ~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~--------~---~~~~~~ad~l~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRS--------G---GDNVCRADALKLPFREESFDAALS 109 (293)
T ss_pred CcceeeecccCCcccCc----CCCcceeeecchhhhhccccccC--------C---CceeehhhhhcCCCCCCccccchh
Confidence 48899999999996653 34678899999999988887742 1 114677899999988889998766
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
= ..-.+-.....-...++++.+.|+|| |.+.+.+
T Consensus 110 i-----avihhlsT~~RR~~~l~e~~r~lrpg-g~~lvyv 143 (293)
T KOG1331|consen 110 I-----AVIHHLSTRERRERALEELLRVLRPG-GNALVYV 143 (293)
T ss_pred h-----hhhhhhhhHHHHHHHHHHHHHHhcCC-CceEEEE
Confidence 1 11111111223346788999999999 8765543
No 274
>KOG4589|consensus
Probab=95.55 E-value=0.095 Score=49.85 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=71.4
Q ss_pred CCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee-ccccc--------c
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC-NVRQL--------C 379 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~-Da~~l--------~ 379 (494)
+++++|||.||-.|.-+--|.+. .|...|+|+|+-+-. +.. -+.++++ |+++. .
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~---------------p~~-Ga~~i~~~dvtdp~~~~ki~e~ 131 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE---------------PPE-GATIIQGNDVTDPETYRKIFEA 131 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc---------------CCC-CcccccccccCCHHHHHHHHHh
Confidence 58999999999999998777665 488899999985421 111 1234444 65542 1
Q ss_pred CCCCCeeEEEEcCC---CccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 380 FKPACVDGIVTDLP---FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 380 ~~~~~~D~IVtNPP---YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+++..+|+|++|+- -|.++-++....+|....+.-+...++|+ |.++.
T Consensus 132 lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~-g~fvc 182 (232)
T KOG4589|consen 132 LPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPN-GSFVC 182 (232)
T ss_pred CCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCC-cEEEE
Confidence 34568999999973 36666666566677777777777788999 87765
No 275
>KOG1227|consensus
Probab=95.50 E-value=0.018 Score=58.27 Aligned_cols=75 Identities=15% Similarity=0.018 Sum_probs=57.2
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
.+..|+|+++|-|.|.+...-......|++.|++|.+++..++|++.+++ .++..+..+|-+...+ ....|.|..
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V----~~r~~i~~gd~R~~~~-~~~AdrVnL 268 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV----MDRCRITEGDNRNPKP-RLRADRVNL 268 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch----HHHHHhhhccccccCc-cccchheee
Confidence 45899999999998876333222236899999999999999999999875 4556778888877543 356777655
No 276
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=95.49 E-value=0.087 Score=51.27 Aligned_cols=121 Identities=13% Similarity=0.085 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
...+.||.|||.|.+.-...+.. .-.|-.+|..+..++.|++.+...+ ....++++.-..++.+..++||+|-+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~-----~~v~~~~~~gLQ~f~P~~~~YDlIW~ 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDN-----PRVGEFYCVGLQDFTPEEGKYDLIWI 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGG-----CCEEEEEES-GGG----TT-EEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccC-----CCcceEEecCHhhccCCCCcEeEEEe
Confidence 35689999999999976654432 3578899999999999998766411 12345777777766444579999988
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE---Eec---------------CHHHHHHHHHhcc
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL---LTS---------------DRKHLIQALHITS 444 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl---lt~---------------~~~~l~~~l~~~~ 444 (494)
.== ++.-.+ .+ +-.||+.....|+|+ |.+++ ++. ....+.+.+.+.|
T Consensus 129 QW~----lghLTD-~d-lv~fL~RCk~~L~~~-G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AG 193 (218)
T PF05891_consen 129 QWC----LGHLTD-ED-LVAFLKRCKQALKPN-GVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAG 193 (218)
T ss_dssp ES-----GGGS-H-HH-HHHHHHHHHHHEEEE-EEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT
T ss_pred hHh----hccCCH-HH-HHHHHHHHHHhCcCC-cEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcC
Confidence 421 111111 22 346888899999998 88776 333 2245677777766
No 277
>KOG1269|consensus
Probab=95.08 E-value=0.066 Score=56.22 Aligned_cols=107 Identities=21% Similarity=0.181 Sum_probs=76.4
Q ss_pred CCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeE
Q psy19 308 SPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG 387 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~ 387 (494)
+..++..++|.+||.|....+.+.. ..+.++|.|.++..+..+..-...+++ .....+..+|+...|++++.||.
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l----~~k~~~~~~~~~~~~fedn~fd~ 181 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYL----DNKCNFVVADFGKMPFEDNTFDG 181 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHh----hhhcceehhhhhcCCCCccccCc
Confidence 3457778999999999998777653 457899999999877777665554443 34455677899988898889998
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+-+. .......+...+|. ++.++++|| |....
T Consensus 182 v~~l----d~~~~~~~~~~~y~----Ei~rv~kpG-G~~i~ 213 (364)
T KOG1269|consen 182 VRFL----EVVCHAPDLEKVYA----EIYRVLKPG-GLFIV 213 (364)
T ss_pred EEEE----eecccCCcHHHHHH----HHhcccCCC-ceEEe
Confidence 7662 11112234455555 799999999 86544
No 278
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.98 E-value=0.072 Score=53.45 Aligned_cols=105 Identities=15% Similarity=0.095 Sum_probs=70.3
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCC---CCeeE
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP---ACVDG 387 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~---~~~D~ 387 (494)
.|..|+=.| ----++|++|+.....+|.-+|||++.+....+-++..|+ .++..+..|.++ |++. ..||+
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-----~~ie~~~~Dlr~-plpe~~~~kFDv 224 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-----NNIEAFVFDLRN-PLPEDLKRKFDV 224 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-----cchhheeehhcc-cChHHHHhhCCe
Confidence 345566555 3444566666654446788899999999999999998876 235778889887 4442 58999
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhccc-CC-CcEEEEEec
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVR-PQ-IGRAILLTS 431 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLk-pg-~G~lvllt~ 431 (494)
++||||+-.. -++.|+..-...|+ +| .|.+.+-..
T Consensus 225 fiTDPpeTi~---------alk~FlgRGI~tLkg~~~aGyfgiT~r 261 (354)
T COG1568 225 FITDPPETIK---------ALKLFLGRGIATLKGEGCAGYFGITRR 261 (354)
T ss_pred eecCchhhHH---------HHHHHHhccHHHhcCCCccceEeeeec
Confidence 9999997422 14455555555666 33 255555433
No 279
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.97 E-value=0.13 Score=52.98 Aligned_cols=94 Identities=19% Similarity=0.214 Sum_probs=60.3
Q ss_pred EEEEcCCcChHHHHHHhcCCCCe-EEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC-CCCeeEEEEcC
Q psy19 315 FLDPMCGGGTIPVECSLSYPHTF-FVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK-PACVDGIVTDL 392 (494)
Q Consensus 315 VLDP~CGSGtilIEAA~~~~~~~-v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~-~~~~D~IVtNP 392 (494)
|+|+|||.|++..-+-.. +.. +.++|+++.+++..+.|... .+..+|+.++... -..+|+++.-|
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~-----------~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN-----------KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC-----------CCCccChhhhhhhhCCCcCEEEecC
Confidence 689999999987665444 444 56799999999999998641 2345677766321 13589999999
Q ss_pred C---C---ccccCCccchHHHHHHHHHHHhhcccCC
Q psy19 393 P---F---GKRVGSKSNNFLLYRLFLIEIGKIVRPQ 422 (494)
Q Consensus 393 P---Y---G~r~~~~~~~~~ly~~fL~~l~rvLkpg 422 (494)
| | |.+.+....-..|+..+++- .+.++|.
T Consensus 68 PCq~fS~ag~~~~~~d~r~~L~~~~~r~-i~~~~P~ 102 (315)
T TIGR00675 68 PCQPFSIAGKRKGFEDTRGTLFFEIVRI-LKEKKPK 102 (315)
T ss_pred CCcccchhcccCCCCCchhhHHHHHHHH-HhhcCCC
Confidence 9 3 33322222223455555543 3445776
No 280
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.70 E-value=0.36 Score=48.88 Aligned_cols=105 Identities=14% Similarity=0.086 Sum_probs=56.8
Q ss_pred CEEEEEcCCcChHHHH---HHh-cCCCCeEEEEeCCHHHHHHHHHHHH-hccCCCCcccceeeeeeccccccCCCCCeeE
Q psy19 313 DVFLDPMCGGGTIPVE---CSL-SYPHTFFVCGDINEKLVLKTQANVL-HNSGNLNRELKVSPLVCNVRQLCFKPACVDG 387 (494)
Q Consensus 313 ~~VLDP~CGSGtilIE---AA~-~~~~~~v~G~Did~~al~~Ar~Nl~-~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~ 387 (494)
.+|+=+|| |-+++. .+. ..++..+.++|+|+.|++.|++=+. ..| +..++.++.+|....+..-..||+
T Consensus 122 ~rVaFIGS--GPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~----L~~~m~f~~~d~~~~~~dl~~~Dv 195 (276)
T PF03059_consen 122 SRVAFIGS--GPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG----LSKRMSFITADVLDVTYDLKEYDV 195 (276)
T ss_dssp -EEEEE-----SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H----H-SSEEEEES-GGGG-GG----SE
T ss_pred ceEEEEcC--CCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc----ccCCeEEEecchhccccccccCCE
Confidence 47876655 544433 332 2346789999999999999998777 333 356678999999877543357998
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
|+.--= .+... +--.+++..+.+.++|| ..+++=+.
T Consensus 196 V~lAal----Vg~~~---e~K~~Il~~l~~~m~~g-a~l~~Rsa 231 (276)
T PF03059_consen 196 VFLAAL----VGMDA---EPKEEILEHLAKHMAPG-ARLVVRSA 231 (276)
T ss_dssp EEE-TT-----S-------SHHHHHHHHHHHS-TT-SEEEEEE-
T ss_pred EEEhhh----ccccc---chHHHHHHHHHhhCCCC-cEEEEecc
Confidence 877321 22110 01235677899999998 76655433
No 281
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=94.40 E-value=0.041 Score=46.71 Aligned_cols=98 Identities=11% Similarity=-0.029 Sum_probs=38.3
Q ss_pred EEEcCCcChHHHHHHhcCCC---CeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--cCCCCCeeEEEE
Q psy19 316 LDPMCGGGTIPVECSLSYPH---TFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKPACVDGIVT 390 (494)
Q Consensus 316 LDP~CGSGtilIEAA~~~~~---~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~~~~~~~D~IVt 390 (494)
|++||..|...+..+...+. .+++++|..+. .+.++++++..+ ...++.++++|..+. .+...++|+|+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~----~~~~~~~~~g~s~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG----LSDRVEFIQGDSPDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS-------------GG----G-BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC----CCCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence 46786677655444433222 37999999996 444555555433 345688999988655 232468999999
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
|=+ + ..+.....++.+...|+|| |.+++
T Consensus 76 Dg~-------H--~~~~~~~dl~~~~~~l~~g-gviv~ 103 (106)
T PF13578_consen 76 DGD-------H--SYEAVLRDLENALPRLAPG-GVIVF 103 (106)
T ss_dssp ES------------HHHHHHHHHHHGGGEEEE-EEEEE
T ss_pred CCC-------C--CHHHHHHHHHHHHHHcCCC-eEEEE
Confidence 742 1 1122334556688889998 75543
No 282
>KOG3201|consensus
Probab=94.09 E-value=0.11 Score=48.42 Aligned_cols=129 Identities=19% Similarity=0.126 Sum_probs=78.9
Q ss_pred cchHHHHHHHHHHhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGG-GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 294 ~L~e~lAa~ll~la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
|-.|.||+.++.--..-.|..||++|.|- |--++..|..-|...|+-.|-+.++++-.+.-...+-. .. ...+....
T Consensus 12 pseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~-s~-~tsc~vlr 89 (201)
T KOG3201|consen 12 PSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA-SS-LTSCCVLR 89 (201)
T ss_pred ccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc-cc-cceehhhH
Confidence 45677888776643333567899998773 33345555556677899999999999887765544321 11 12222233
Q ss_pred eccccc--cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 373 CNVRQL--CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 373 ~Da~~l--~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
++.-.- ......||.|++- .. --..+.-..+++.+.++|+|. |++.+.+|.+
T Consensus 90 w~~~~aqsq~eq~tFDiIlaA-------DC-lFfdE~h~sLvdtIk~lL~p~-g~Al~fsPRR 143 (201)
T KOG3201|consen 90 WLIWGAQSQQEQHTFDIILAA-------DC-LFFDEHHESLVDTIKSLLRPS-GRALLFSPRR 143 (201)
T ss_pred HHHhhhHHHHhhCcccEEEec-------cc-hhHHHHHHHHHHHHHHHhCcc-cceeEecCcc
Confidence 322111 1123589999881 11 112333455667899999999 9999999965
No 283
>KOG4058|consensus
Probab=94.03 E-value=0.18 Score=46.21 Aligned_cols=83 Identities=12% Similarity=0.043 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccc
Q psy19 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376 (494)
Q Consensus 297 e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~ 376 (494)
+.++. ++.++.-++..+++|+|.|.|.|.+.||... -....|++++|-.+..++-.+-.+|+ .....|...|..
T Consensus 59 eQv~n-VLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~----~k~trf~Rkdlw 132 (199)
T KOG4058|consen 59 EQVEN-VLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGC----AKSTRFRRKDLW 132 (199)
T ss_pred HHHHH-HHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhc----ccchhhhhhhhh
Confidence 44444 3555555666789999999999999998873 25688999999999999999888875 344568888888
Q ss_pred cccCCCCCe
Q psy19 377 QLCFKPACV 385 (494)
Q Consensus 377 ~l~~~~~~~ 385 (494)
+..+.+-.+
T Consensus 133 K~dl~dy~~ 141 (199)
T KOG4058|consen 133 KVDLRDYRN 141 (199)
T ss_pred hccccccce
Confidence 776654333
No 284
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=93.91 E-value=1.5 Score=40.90 Aligned_cols=111 Identities=14% Similarity=0.023 Sum_probs=66.9
Q ss_pred chHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeec
Q psy19 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374 (494)
Q Consensus 295 L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~D 374 (494)
....||..++..+. ++.+|+=++|=|--..+.. ...+...++-.|+|.+--. .+ .. .+..-|
T Consensus 11 T~~~l~~~l~~~~~--~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~--------~~------~~-~F~fyD 72 (162)
T PF10237_consen 11 TAEFLARELLDGAL--DDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQ--------FG------GD-EFVFYD 72 (162)
T ss_pred HHHHHHHHHHHhcC--CCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHh--------cC------Cc-ceEECC
Confidence 44566666666543 4578998888775554443 1235678888999986522 11 11 244444
Q ss_pred cccc---c--CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 375 VRQL---C--FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 375 a~~l---~--~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
.... | + .+++|+||+||||-. .+........+.-+++++ ++++++|+..
T Consensus 73 ~~~p~~~~~~l-~~~~d~vv~DPPFl~--------~ec~~k~a~ti~~L~k~~-~kii~~Tg~~ 126 (162)
T PF10237_consen 73 YNEPEELPEEL-KGKFDVVVIDPPFLS--------EECLTKTAETIRLLLKPG-GKIILCTGEE 126 (162)
T ss_pred CCChhhhhhhc-CCCceEEEECCCCCC--------HHHHHHHHHHHHHHhCcc-ceEEEecHHH
Confidence 4332 1 2 368999999999921 223333334455556777 8999888864
No 285
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=93.89 E-value=0.74 Score=44.85 Aligned_cols=125 Identities=14% Similarity=0.036 Sum_probs=79.0
Q ss_pred CEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC---CCCeeEEE
Q psy19 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK---PACVDGIV 389 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~---~~~~D~IV 389 (494)
-++||+||=+..-.+... +-..|+.+|+++.. -.+.+.|+.+.|++ .+.||+|+
T Consensus 53 lrlLEVGals~~N~~s~~---~~fdvt~IDLns~~--------------------~~I~qqDFm~rplp~~~~e~FdvIs 109 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTS---GWFDVTRIDLNSQH--------------------PGILQQDFMERPLPKNESEKFDVIS 109 (219)
T ss_pred ceEEeecccCCCCccccc---CceeeEEeecCCCC--------------------CCceeeccccCCCCCCcccceeEEE
Confidence 589999998666544322 22459999998721 14789999998764 46899998
Q ss_pred EcCCCccccCCccchHHHHHHHHHHHhhcccCCCcE-----EEEEecCH----------HHHHHHHHhccccceeeeeEE
Q psy19 390 TDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGR-----AILLTSDR----------KHLIQALHITSALWKCRKQIK 454 (494)
Q Consensus 390 tNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~-----lvllt~~~----------~~l~~~l~~~~~l~~~~~~~~ 454 (494)
+-.=-. .+.+... -..++..+.++|+|+ |. +++++|.+ +.|...+...|. ...+.
T Consensus 110 ~SLVLN-fVP~p~~----RG~Ml~r~~~fL~~~-g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf--~~~~~-- 179 (219)
T PF11968_consen 110 LSLVLN-FVPDPKQ----RGEMLRRAHKFLKPP-GLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGF--TRVKY-- 179 (219)
T ss_pred EEEEEe-eCCCHHH----HHHHHHHHHHHhCCC-CccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCc--EEEEE--
Confidence 843100 1122211 235677899999999 98 99998833 346677777773 33332
Q ss_pred EccCCceEEEEEEeeCCC
Q psy19 455 INMSGMKSFVFILNRTAD 472 (494)
Q Consensus 455 v~~Ggl~~~i~v~~~~~~ 472 (494)
...-....+.+++...
T Consensus 180 --~~~~Kl~y~l~r~~~~ 195 (219)
T PF11968_consen 180 --KKSKKLAYWLFRKSGK 195 (219)
T ss_pred --EecCeEEEEEEeecCC
Confidence 2233445666666555
No 286
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.75 E-value=0.13 Score=53.34 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=52.7
Q ss_pred CEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCC--C-CeeEEE
Q psy19 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKP--A-CVDGIV 389 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~--~-~~D~IV 389 (494)
.+++|+|||.|.+..-....+ --.+.++|+|+.+++.-+.|... ..+...|+..+.... . .+|+|+
T Consensus 4 ~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~~----------~~~~~~di~~~~~~~~~~~~~Dvli 72 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFPH----------GDIILGDIKELDGEALRKSDVDVLI 72 (328)
T ss_pred ceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCCC----------CceeechHhhcChhhccccCCCEEE
Confidence 479999999999986655553 24577889999999999998763 135666776653211 2 799999
Q ss_pred EcCCC
Q psy19 390 TDLPF 394 (494)
Q Consensus 390 tNPPY 394 (494)
.-||=
T Consensus 73 gGpPC 77 (328)
T COG0270 73 GGPPC 77 (328)
T ss_pred eCCCC
Confidence 99993
No 287
>COG4889 Predicted helicase [General function prediction only]
Probab=93.22 E-value=0.34 Score=55.48 Aligned_cols=120 Identities=13% Similarity=0.061 Sum_probs=65.0
Q ss_pred CCCEEEEEcCCcChHHHHHHhcC--C-------CCeEEEEeCCHHHHHHHHHHHHhcc--CCCCcccceeeeeeccccc-
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSY--P-------HTFFVCGDINEKLVLKTQANVLHNS--GNLNRELKVSPLVCNVRQL- 378 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~--~-------~~~v~G~Did~~al~~Ar~Nl~~~g--~~~~~~~~i~~~~~Da~~l- 378 (494)
.+-.|||||+|||||........ + ...+.+.||---+.=+|.-|+...- .+......-.+...|.++.
T Consensus 845 ~~vhilDpFtGTGtFi~RlL~alIs~edl~rKf~~eLhA~eIvLLsYYIAaiNIe~t~~~~~gd~~~F~giaLtDtf~~~ 924 (1518)
T COG4889 845 QSVHILDPFTGTGTFIVRLLSALISDEDLKRKFQKELHAFEIVLLSYYIAAINIEQTAQNRDGDLKNFKGIALTDTFDYL 924 (1518)
T ss_pred CCeeeecCCCCccHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHhhhhcCCcccCCCceecchhhhh
Confidence 56789999999999976654421 0 1235566665555556666665431 1000000001222232221
Q ss_pred -------c-C----------CCCCeeEEEEcCCCccccCCc-----------------------------cchHHHHHHH
Q psy19 379 -------C-F----------KPACVDGIVTDLPFGKRVGSK-----------------------------SNNFLLYRLF 411 (494)
Q Consensus 379 -------~-~----------~~~~~D~IVtNPPYG~r~~~~-----------------------------~~~~~ly~~f 411 (494)
. | ..-.+-+||-||||...-.+. ..+.+-|-+.
T Consensus 925 Eed~~d~~~f~~n~erlkrq~~ipI~VIiGNPPYS~gqks~ndnn~nl~ypkLd~rv~~sy~k~STA~nknsl~Dsyira 1004 (1518)
T COG4889 925 EEDTLDGDIFGYNNERLKRQKEIPIRVIIGNPPYSAGQKSENDNNQNLSYPKLDKRVYESYGKNSTATNKNSLRDSYIRA 1004 (1518)
T ss_pred ccccccccccCccHHHHHhhcCCceEEEeCCCCCcccccCcCccccccccchHHHHHHHHHhccchhhcccchHHHHHHH
Confidence 1 1 012578999999995332111 1133445555
Q ss_pred HHHHhhcccCCCcEEEEEec
Q psy19 412 LIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 412 L~~l~rvLkpg~G~lvllt~ 431 (494)
++-+...++.+ |.+.+++.
T Consensus 1005 ~RwasDri~d~-GVigFV~N 1023 (1518)
T COG4889 1005 IRWASDRIKDN-GVIGFVVN 1023 (1518)
T ss_pred HHHHhhhcccC-ceEEEEec
Confidence 56666678888 98888876
No 288
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=93.19 E-value=0.16 Score=50.75 Aligned_cols=129 Identities=19% Similarity=0.267 Sum_probs=73.0
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccC-------------CCC---c-------cc
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSG-------------NLN---R-------EL 366 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~-------------~~~---~-------~~ 366 (494)
..|.++||+|||.-...+-.|..| ...|+..|..+...+..++=++.-+. ... . ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 457899999999955544444443 24688999988877655543332210 000 0 01
Q ss_pred ce-eeeeecccccc-CCC-----CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec--------
Q psy19 367 KV-SPLVCNVRQLC-FKP-----ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS-------- 431 (494)
Q Consensus 367 ~i-~~~~~Da~~l~-~~~-----~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~-------- 431 (494)
.| .++.+|+++.+ +.. ..+|+|++-- -+.....-.+-|...++.+.++|||| |.+++...
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~f----cLE~a~~d~~~y~~al~ni~~lLkpG-G~Lil~~~l~~t~Y~v 208 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSF----CLESACKDLDEYRRALRNISSLLKPG-GHLILAGVLGSTYYMV 208 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEES----SHHHH-SSHHHHHHHHHHHHTTEEEE-EEEEEEEESS-SEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhH----HHHHHcCCHHHHHHHHHHHHHHcCCC-cEEEEEEEcCceeEEE
Confidence 12 36778888763 322 2499998821 11111112456999999999999999 98876422
Q ss_pred ----------CHHHHHHHHHhcc
Q psy19 432 ----------DRKHLIQALHITS 444 (494)
Q Consensus 432 ----------~~~~l~~~l~~~~ 444 (494)
+.+.+.+++.+.|
T Consensus 209 G~~~F~~l~l~ee~v~~al~~aG 231 (256)
T PF01234_consen 209 GGHKFPCLPLNEEFVREALEEAG 231 (256)
T ss_dssp TTEEEE---B-HHHHHHHHHHTT
T ss_pred CCEecccccCCHHHHHHHHHHcC
Confidence 4455667777665
No 289
>PRK10458 DNA cytosine methylase; Provisional
Probab=93.05 E-value=0.51 Score=51.31 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=49.4
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC----------
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK---------- 381 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~---------- 381 (494)
.-+++|+|||.|++.+-+-... .-.+.++|+|+.|.+.-+.|..... ....+.+|+.++...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG-~~~v~a~Eid~~A~~TY~~N~~~~p-------~~~~~~~DI~~i~~~~~~~~~~~~~ 159 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIG-GQCVFTSEWNKHAVRTYKANWYCDP-------ATHRFNEDIRDITLSHKEGVSDEEA 159 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcC-CEEEEEEechHHHHHHHHHHcCCCC-------ccceeccChhhCccccccccchhhh
Confidence 4589999999999977654442 2356789999999999999853110 012334455444210
Q ss_pred -------CCCeeEEEEcCC
Q psy19 382 -------PACVDGIVTDLP 393 (494)
Q Consensus 382 -------~~~~D~IVtNPP 393 (494)
-..+|+++.-||
T Consensus 160 ~~~~~~~~p~~DvL~gGpP 178 (467)
T PRK10458 160 AEHIRQHIPDHDVLLAGFP 178 (467)
T ss_pred hhhhhccCCCCCEEEEcCC
Confidence 125899999999
No 290
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=93.03 E-value=0.14 Score=50.39 Aligned_cols=40 Identities=23% Similarity=0.459 Sum_probs=29.0
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQ 352 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar 352 (494)
+..+++|||||+|.++..+.. ++..++..|+++..+...+
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~--~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQ--PGKRVIINDINPDLINFWK 59 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcc--cccceeeeechHHHHHHHH
Confidence 678999999999999887654 3678999999998776665
No 291
>KOG2798|consensus
Probab=93.02 E-value=0.33 Score=49.65 Aligned_cols=106 Identities=15% Similarity=0.078 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHH--hccC------------------------C---
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVL--HNSG------------------------N--- 361 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~--~~g~------------------------~--- 361 (494)
....||-||||.|.++.+.|..+ -.+-|-+.+--|+-...--+. .... +
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G--~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLG--FKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhc--ccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 45689999999999999999883 455666776666544332221 1000 0
Q ss_pred ------CCcccceeeeeeccccccC---CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEE
Q psy19 362 ------LNRELKVSPLVCNVRQLCF---KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAI 427 (494)
Q Consensus 362 ------~~~~~~i~~~~~Da~~l~~---~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lv 427 (494)
.+..+...+-.||+.+.-. ..+.+|+|||. |. +.+..++. ..+..+..+|+|| |.-+
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc--fF--IDTa~Nil----eYi~tI~~iLk~G-GvWi 293 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC--FF--IDTAHNIL----EYIDTIYKILKPG-GVWI 293 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEE--EE--eechHHHH----HHHHHHHHhccCC-cEEE
Confidence 0000112234467776621 12479999997 44 33332322 4566899999998 7443
No 292
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=92.94 E-value=1.6 Score=43.45 Aligned_cols=131 Identities=14% Similarity=0.103 Sum_probs=86.9
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL 371 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~ 371 (494)
.+++.+.++..+-..-..+++.. +.-.|||=-++-.+.. +.-++.+.++.|.-....+.|... ..++.+.
T Consensus 70 a~~lpa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR--~qDRl~l~ELHp~D~~~L~~~f~~-------d~~vrv~ 139 (279)
T COG2961 70 AADLPAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLR--EQDRLVLTELHPSDAPLLRNNFAG-------DRRVRVL 139 (279)
T ss_pred cCCchHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcc--hhceeeeeecCccHHHHHHHHhCC-------CcceEEE
Confidence 46777777777655555556554 8889999755443332 356899999999999999988872 2356788
Q ss_pred eeccccc-----cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhccc--CCCcEEEEEec--CHHHHHHHHHh
Q psy19 372 VCNVRQL-----CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVR--PQIGRAILLTS--DRKHLIQALHI 442 (494)
Q Consensus 372 ~~Da~~l-----~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLk--pg~G~lvllt~--~~~~l~~~l~~ 442 (494)
++|-... |++ +.-.+|+.||||-..- -|.+++..+.+.++ ++ |..++=.| +...+.+.++.
T Consensus 140 ~~DG~~~l~a~LPP~-erRglVLIDPPfE~~~--------eY~rvv~~l~~~~kRf~~-g~yaiWYPik~r~~~~~f~~~ 209 (279)
T COG2961 140 RGDGFLALKAHLPPK-ERRGLVLIDPPFELKD--------EYQRVVEALAEAYKRFAT-GTYAIWYPIKDRRQIRRFLRA 209 (279)
T ss_pred ecCcHHHHhhhCCCC-CcceEEEeCCCccccc--------HHHHHHHHHHHHHHhhcC-ceEEEEEeecchHHHHHHHHH
Confidence 8885432 333 4678999999997431 27777777777776 44 76665444 44444444443
No 293
>KOG2940|consensus
Probab=92.92 E-value=0.21 Score=49.05 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=73.4
Q ss_pred ccchHHHHHHHHHHh-CC-CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceee
Q psy19 293 TTLKPTIAYNMVRLA-SP-IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370 (494)
Q Consensus 293 a~L~e~lAa~ll~la-~~-~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~ 370 (494)
..+.+.++..++... +. +....++|+|||-|.+.--..... -.+++-.|.+..|++.++.--. . .-....
T Consensus 52 dylkeeig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qd-p------~i~~~~ 123 (325)
T KOG2940|consen 52 DYLKEEIGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQD-P------SIETSY 123 (325)
T ss_pred hHHHHHHHHHHHHHHHHHhhhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCC-C------ceEEEE
Confidence 346677766665433 22 234579999999998865544432 2468899999999998875321 1 123456
Q ss_pred eeeccccccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCc
Q psy19 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIG 424 (494)
Q Consensus 371 ~~~Da~~l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G 424 (494)
..+|-..+++.++++|+||+..--. ...+ .+..+.++...|||. |
T Consensus 124 ~v~DEE~Ldf~ens~DLiisSlslH----W~Nd----LPg~m~~ck~~lKPD-g 168 (325)
T KOG2940|consen 124 FVGDEEFLDFKENSVDLIISSLSLH----WTND----LPGSMIQCKLALKPD-G 168 (325)
T ss_pred Eecchhcccccccchhhhhhhhhhh----hhcc----CchHHHHHHHhcCCC-c
Confidence 7788888889889999999854311 0111 223333566677776 5
No 294
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=92.92 E-value=0.29 Score=49.37 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=38.9
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHHHHh
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPH-TFFVCGDINEKLVLKTQANVLH 357 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~-~~v~G~Did~~al~~Ar~Nl~~ 357 (494)
..+|||.|||.||-+..+...|+. ..++++|.++.|++.++.-+..
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 358999999999998888777873 4688999999999999986653
No 295
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=92.91 E-value=0.59 Score=43.70 Aligned_cols=107 Identities=23% Similarity=0.282 Sum_probs=65.7
Q ss_pred CCcChHHHHHHh--cCC-CCeEEEE--eCCHHHHHHHH---HHHHhccCCCCcccceeeeeecccccc--C--CCCCeeE
Q psy19 320 CGGGTIPVECSL--SYP-HTFFVCG--DINEKLVLKTQ---ANVLHNSGNLNRELKVSPLVCNVRQLC--F--KPACVDG 387 (494)
Q Consensus 320 CGSGtilIEAA~--~~~-~~~v~G~--Did~~al~~Ar---~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~--~~~~~D~ 387 (494)
+|-|-|+..+++ ... ...+++. |...+.++... .|+....- .+. .-+...|+..+. + ....||.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~---~V~~~VDat~l~~~~~~~~~~FDr 78 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-LGV---TVLHGVDATKLHKHFRLKNQRFDR 78 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-cCC---ccccCCCCCcccccccccCCcCCE
Confidence 566766555443 333 4455555 65555555443 66664421 111 124556888873 2 3468999
Q ss_pred EEEcCCCcc-ccCC-c---cchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 388 IVTDLPFGK-RVGS-K---SNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 388 IVtNPPYG~-r~~~-~---~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
||.|-|.-. .... . ..+..|...|++.+..+|+++ |.+.|-..
T Consensus 79 IiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~-G~IhVTl~ 126 (166)
T PF10354_consen 79 IIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPD-GEIHVTLK 126 (166)
T ss_pred EEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEeC
Confidence 999999642 1111 1 134678999999999999998 98877543
No 296
>KOG1596|consensus
Probab=92.04 E-value=0.71 Score=45.66 Aligned_cols=119 Identities=14% Similarity=0.165 Sum_probs=76.7
Q ss_pred ccchHHHHHHHHHH---hCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccce
Q psy19 293 TTLKPTIAYNMVRL---ASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKV 368 (494)
Q Consensus 293 a~L~e~lAa~ll~l---a~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i 368 (494)
.|.+..||++++-= ...++|..||=+++++||..-...-. .|...||+++.++..=+.. .|+... ..+|
T Consensus 135 nPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL-~nmAkk------RtNi 207 (317)
T KOG1596|consen 135 NPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDL-INMAKK------RTNI 207 (317)
T ss_pred ChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHH-HHHhhc------cCCc
Confidence 46889999998643 23589999999999999986655443 5667899999987653222 222211 1234
Q ss_pred eeeeeccccccC---CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 369 SPLVCNVRQLCF---KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 369 ~~~~~Da~~l~~---~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
-.+..|++.... --+.+|+|++|-|--.. .+.+.-.+..+||+| |.+++.
T Consensus 208 iPIiEDArhP~KYRmlVgmVDvIFaDvaqpdq----------~RivaLNA~~FLk~g-Ghfvis 260 (317)
T KOG1596|consen 208 IPIIEDARHPAKYRMLVGMVDVIFADVAQPDQ----------ARIVALNAQYFLKNG-GHFVIS 260 (317)
T ss_pred eeeeccCCCchheeeeeeeEEEEeccCCCchh----------hhhhhhhhhhhhccC-CeEEEE
Confidence 566778886421 12478999998652211 111112366789999 887764
No 297
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=92.01 E-value=0.57 Score=46.59 Aligned_cols=74 Identities=19% Similarity=0.097 Sum_probs=48.9
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIV 389 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IV 389 (494)
.+..+|+|++||-=-+.+-.....+++.++|+|||..+++....-+...+. ...+...|...-+. ....|+.+
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~------~~~~~v~Dl~~~~~-~~~~DlaL 176 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV------PHDARVRDLLSDPP-KEPADLAL 176 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-------CEEEEEE-TTTSHT-TSEESEEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC------CcceeEeeeeccCC-CCCcchhh
Confidence 346899999999886666544444568999999999999999988887654 23456667665433 24677766
Q ss_pred E
Q psy19 390 T 390 (494)
Q Consensus 390 t 390 (494)
.
T Consensus 177 l 177 (251)
T PF07091_consen 177 L 177 (251)
T ss_dssp E
T ss_pred H
Confidence 5
No 298
>KOG2912|consensus
Probab=91.90 E-value=0.15 Score=52.19 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=49.3
Q ss_pred EEEcCCcChHHHHHHh---cCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee--------ccccccCCCCC
Q psy19 316 LDPMCGGGTIPVECSL---SYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC--------NVRQLCFKPAC 384 (494)
Q Consensus 316 LDP~CGSGtilIEAA~---~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~--------Da~~l~~~~~~ 384 (494)
+|+|.|+ -.|+.+. ++ +...++.|+|...+.-|+.|+..+++ ...+.+++. |+... -++..
T Consensus 107 iDIgtga--sci~~llg~rq~-n~~f~~teidd~s~~~a~snV~qn~l----ss~ikvV~~~~~ktll~d~~~~-~~e~~ 178 (419)
T KOG2912|consen 107 IDIGTGA--SCIYPLLGARQN-NWYFLATEIDDMSFNYAKSNVEQNNL----SSLIKVVKVEPQKTLLMDALKE-ESEII 178 (419)
T ss_pred eeccCch--hhhHHhhhchhc-cceeeeeeccccccchhhcccccccc----ccceeeEEecchhhcchhhhcc-Cccce
Confidence 6885554 4555443 22 35789999999999999999998875 333444443 22221 11346
Q ss_pred eeEEEEcCCCccc
Q psy19 385 VDGIVTDLPFGKR 397 (494)
Q Consensus 385 ~D~IVtNPPYG~r 397 (494)
||..+|||||.+.
T Consensus 179 ydFcMcNPPFfe~ 191 (419)
T KOG2912|consen 179 YDFCMCNPPFFEN 191 (419)
T ss_pred eeEEecCCchhhc
Confidence 9999999998543
No 299
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=91.85 E-value=0.17 Score=57.12 Aligned_cols=49 Identities=31% Similarity=0.432 Sum_probs=42.2
Q ss_pred hCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHh
Q psy19 307 ASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH 357 (494)
Q Consensus 307 a~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~ 357 (494)
..+..+..++|||+|-|+|++||+.+ |+.++++|.+|.+.-.-+..++.
T Consensus 86 ~~~~~~~~~lDPfAG~GSIPlEAlRL--G~~v~AvelnPvAylfLKavlEy 134 (875)
T COG1743 86 ETPFEGPKLLDPFAGGGSIPLEALRL--GLEVVAVELNPVAYLFLKAVLEY 134 (875)
T ss_pred cCcccCCcccccccCCCccchHHHhc--CceeEEEecccHHHHHHHHHHhc
Confidence 34556778999999999999999999 79999999999998887776653
No 300
>KOG3178|consensus
Probab=90.72 E-value=1.3 Score=45.92 Aligned_cols=97 Identities=18% Similarity=0.074 Sum_probs=68.0
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEc
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTD 391 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtN 391 (494)
-...+|.|.|.|+++-.....+| .|-|++.|...+-.++.++. .|+ ..+-+|.+.- .| .-|+|++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-~gV--------~~v~gdmfq~-~P--~~daI~m- 242 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-PGV--------EHVAGDMFQD-TP--KGDAIWM- 242 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-CCc--------ceeccccccc-CC--CcCeEEE-
Confidence 47899999999999999988776 47889999998888888875 442 4556776554 33 2346665
Q ss_pred CCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 392 LPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 392 PPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
.++-.+ -..+-.-+||+....-|+|+ |.++++
T Consensus 243 ----kWiLhd-wtDedcvkiLknC~~sL~~~-GkIiv~ 274 (342)
T KOG3178|consen 243 ----KWILHD-WTDEDCVKILKNCKKSLPPG-GKIIVV 274 (342)
T ss_pred ----Eeeccc-CChHHHHHHHHHHHHhCCCC-CEEEEE
Confidence 232111 11222457888899999999 887774
No 301
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=90.25 E-value=0.66 Score=44.54 Aligned_cols=119 Identities=15% Similarity=0.069 Sum_probs=61.3
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhc-CCCCeEEEEeCC----HHHHHHHHHHHHhccCCCCcccceeeeeecccc
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLS-YPHTFFVCGDIN----EKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ 377 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~-~~~~~v~G~Did----~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~ 377 (494)
+|..+++++|.+|+|.-.|.|-+.--.+-. .|...|+++=-+ +......+.|..... ....+++.+..+...
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e---~~~aN~e~~~~~~~A 116 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE---PVYANVEVIGKPLVA 116 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh---hhhhhhhhhCCcccc
Confidence 345678899999999999999886444332 344567766222 222233333332210 001122333334433
Q ss_pred ccCCCCCeeEEEEcCCCccccC---CccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 378 LCFKPACVDGIVTDLPFGKRVG---SKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 378 l~~~~~~~D~IVtNPPYG~r~~---~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+.. ....|++.++-=|..... ....... +.+++.+.|||| |.++++-
T Consensus 117 ~~~-pq~~d~~~~~~~yhdmh~k~i~~~~A~~----vna~vf~~LKPG-Gv~~V~d 166 (238)
T COG4798 117 LGA-PQKLDLVPTAQNYHDMHNKNIHPATAAK----VNAAVFKALKPG-GVYLVED 166 (238)
T ss_pred cCC-CCcccccccchhhhhhhccccCcchHHH----HHHHHHHhcCCC-cEEEEEe
Confidence 332 234555555444422110 0122333 444789999999 9877763
No 302
>KOG2352|consensus
Probab=89.87 E-value=3.6 Score=44.61 Aligned_cols=109 Identities=15% Similarity=0.134 Sum_probs=74.6
Q ss_pred EEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEEcCC
Q psy19 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLP 393 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVtNPP 393 (494)
+++-+|||---+....-.-+ ...|+-+|+++-+++.+..--.. ......+...|+..+.+++++||+||-= +
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~------~~~~~~~~~~d~~~l~fedESFdiVIdk-G 122 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAK------ERPEMQMVEMDMDQLVFEDESFDIVIDK-G 122 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhcccc------CCcceEEEEecchhccCCCcceeEEEec-C
Confidence 89999999987766654432 25699999999998887643211 1234578889999999999999988863 3
Q ss_pred CccccCCcc-chH--HHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 394 FGKRVGSKS-NNF--LLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 394 YG~r~~~~~-~~~--~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+...+-..+ +.. ..-...+.++.|+|++| |+...++.
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~-gk~~svtl 162 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPG-GKYISVTL 162 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccC-CEEEEEEe
Confidence 333332211 111 12335677899999999 98776655
No 303
>PHA01634 hypothetical protein
Probab=89.57 E-value=1.8 Score=38.92 Aligned_cols=49 Identities=16% Similarity=-0.063 Sum_probs=43.3
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccC
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSG 360 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~ 360 (494)
.+.+|+|+|++.|.-+|..+++.. ..|++++.++...+..++|++.+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhhhee
Confidence 567999999999999999998853 5799999999999999999997653
No 304
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=89.53 E-value=1.7 Score=43.02 Aligned_cols=99 Identities=21% Similarity=0.135 Sum_probs=64.6
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC--CCCeeE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK--PACVDG 387 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~--~~~~D~ 387 (494)
-+|.++||+|+-||+|.--+.... ...|+|+|.....+..--+|-. ..+.+...|++.+... .+..|+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~---------rV~~~E~tN~r~l~~~~~~~~~d~ 147 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDP---------RVIVLERTNVRYLTPEDFTEKPDL 147 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCC---------cEEEEecCChhhCCHHHcccCCCe
Confidence 478899999999999987666553 3689999987765544333211 1234555677766321 236889
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+++|--|-. ...+|..+..+++++ +.++.+.
T Consensus 148 ~v~DvSFIS-----------L~~iLp~l~~l~~~~-~~~v~Lv 178 (245)
T COG1189 148 IVIDVSFIS-----------LKLILPALLLLLKDG-GDLVLLV 178 (245)
T ss_pred EEEEeehhh-----------HHHHHHHHHHhcCCC-ceEEEEe
Confidence 999876531 224455678888887 6655543
No 305
>KOG1562|consensus
Probab=89.48 E-value=2.5 Score=43.17 Aligned_cols=117 Identities=14% Similarity=0.062 Sum_probs=79.5
Q ss_pred CCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--cCCCCCeeE
Q psy19 310 IPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKPACVDG 387 (494)
Q Consensus 310 ~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~~~~~~~D~ 387 (494)
...++|+=+|-|-|.++-|.++--.-..+.-.|||...++..++-+....... -..++.+.-+|-..+ ....+.||+
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy-~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGY-EGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhccc-CCCceEEEeccHHHHHHHhccCCceE
Confidence 34568999999999999887764212367888999999999998776532211 134678888897766 233579999
Q ss_pred EEEcCCCccccCCccchHHHH-HHHHHHHhhcccCCCcEEEEEecCH
Q psy19 388 IVTDLPFGKRVGSKSNNFLLY-RLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly-~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
||+|-- ........+| +.++..+.+.||++ |..+......
T Consensus 199 ii~dss-----dpvgpa~~lf~~~~~~~v~~aLk~d-gv~~~q~ec~ 239 (337)
T KOG1562|consen 199 IITDSS-----DPVGPACALFQKPYFGLVLDALKGD-GVVCTQGECM 239 (337)
T ss_pred EEEecC-----CccchHHHHHHHHHHHHHHHhhCCC-cEEEEeccee
Confidence 999631 1111223344 34677889999998 8776665443
No 306
>KOG1501|consensus
Probab=88.45 E-value=0.71 Score=49.19 Aligned_cols=73 Identities=12% Similarity=0.034 Sum_probs=55.6
Q ss_pred CEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC-CCCeeEEEE
Q psy19 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK-PACVDGIVT 390 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~-~~~~D~IVt 390 (494)
.-|||+|+|||-++..|+.... -.+++++.-.-|...|+.-...+|. .++|++++.-..++... ....|++++
T Consensus 68 v~vLdigtGTGLLSmMAvraga-D~vtA~EvfkPM~d~arkI~~kng~----SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA-DSVTACEVFKPMVDLARKIMHKNGM----SDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcC-CeEEeehhhchHHHHHHHHHhcCCC----ccceeeeccccceeeecCcchhhhhhH
Confidence 4699999999999999998863 4699999999999999999997765 56778877655555321 123555554
No 307
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=87.46 E-value=1.5 Score=43.63 Aligned_cols=97 Identities=14% Similarity=0.135 Sum_probs=52.8
Q ss_pred EEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc-----cCCCCCeeEEEE
Q psy19 316 LDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL-----CFKPACVDGIVT 390 (494)
Q Consensus 316 LDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l-----~~~~~~~D~IVt 390 (494)
+....||=.|+.. ..-+.-+.+.+|+++...+.-+.|+.. ..++.+.+.|.... |+ ...-.+|+.
T Consensus 62 l~~YPGSP~ia~~--llR~qDrl~l~ELHp~d~~~L~~~~~~-------~~~v~v~~~DG~~~l~allPP-~~rRglVLI 131 (245)
T PF04378_consen 62 LRFYPGSPAIAAR--LLREQDRLVLFELHPQDFEALKKNFRR-------DRRVRVHHRDGYEGLKALLPP-PERRGLVLI 131 (245)
T ss_dssp --EEE-HHHHHHH--HS-TTSEEEEE--SHHHHHHHTTS--T-------TS-EEEE-S-HHHHHHHH-S--TTS-EEEEE
T ss_pred cCcCCCCHHHHHH--hCCccceEEEEecCchHHHHHHHHhcc-------CCccEEEeCchhhhhhhhCCC-CCCCeEEEE
Confidence 5566677655444 333467899999999999999888763 23578899997653 33 356889999
Q ss_pred cCCCccccCCccchHHHHHHHHHHHhhccc--CCCcEEEEEec
Q psy19 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVR--PQIGRAILLTS 431 (494)
Q Consensus 391 NPPYG~r~~~~~~~~~ly~~fL~~l~rvLk--pg~G~lvllt~ 431 (494)
||||-... + |.+++..+...++ +. |.+++=.|
T Consensus 132 DPpYE~~~----d----y~~v~~~l~~a~kR~~~-G~~~iWYP 165 (245)
T PF04378_consen 132 DPPYEQKD----D----YQRVVDALAKALKRWPT-GVYAIWYP 165 (245)
T ss_dssp -----STT----H----HHHHHHHHHHHHHH-TT-SEEEEEEE
T ss_pred CCCCCCch----H----HHHHHHHHHHHHHhcCC-cEEEEEee
Confidence 99997542 2 6666666666666 55 76555333
No 308
>KOG2360|consensus
Probab=86.34 E-value=1.7 Score=45.78 Aligned_cols=85 Identities=13% Similarity=0.046 Sum_probs=64.7
Q ss_pred HHhCCCCCCEEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC--
Q psy19 305 RLASPIPGDVFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK-- 381 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~-- 381 (494)
.++.+.+|..|+|+||--|.=.+-.|... +...++|+|.+..-++..+.-+..+|++ .+....+|+...+.+
T Consensus 207 ~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~-----~~~~~~~df~~t~~~~~ 281 (413)
T KOG2360|consen 207 HLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS-----IVESVEGDFLNTATPEK 281 (413)
T ss_pred hhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC-----ccccccccccCCCCccc
Confidence 45677788999999999997666655543 3578999999999999999999988862 245558888775221
Q ss_pred CCCeeEEEEcCCC
Q psy19 382 PACVDGIVTDLPF 394 (494)
Q Consensus 382 ~~~~D~IVtNPPY 394 (494)
-..+-.|++||+-
T Consensus 282 ~~~v~~iL~Dpsc 294 (413)
T KOG2360|consen 282 FRDVTYILVDPSC 294 (413)
T ss_pred ccceeEEEeCCCC
Confidence 1357799999995
No 309
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=85.87 E-value=4.2 Score=42.38 Aligned_cols=97 Identities=15% Similarity=0.097 Sum_probs=60.1
Q ss_pred HHhCCCCCCEEEEEcCC-cChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee-ccccccCCC
Q psy19 305 RLASPIPGDVFLDPMCG-GGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC-NVRQLCFKP 382 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CG-SGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~-Da~~l~~~~ 382 (494)
..++.+||+.|+=.|+| .|.+++..|... +++|+++|++++-.+.|++--.. .++.+ |....+.-.
T Consensus 160 k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGAd-----------~~i~~~~~~~~~~~~ 227 (339)
T COG1064 160 KKANVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGAD-----------HVINSSDSDALEAVK 227 (339)
T ss_pred hhcCCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCCc-----------EEEEcCCchhhHHhH
Confidence 34556789998888877 456667766633 58999999999999888864221 12221 221111111
Q ss_pred CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+.+|+||.--| .. -+....+.|+++ |+++++
T Consensus 228 ~~~d~ii~tv~-------~~--------~~~~~l~~l~~~-G~~v~v 258 (339)
T COG1064 228 EIADAIIDTVG-------PA--------TLEPSLKALRRG-GTLVLV 258 (339)
T ss_pred hhCcEEEECCC-------hh--------hHHHHHHHHhcC-CEEEEE
Confidence 24898887322 11 122466788888 988876
No 310
>KOG2782|consensus
Probab=85.64 E-value=0.81 Score=44.62 Aligned_cols=76 Identities=13% Similarity=0.065 Sum_probs=63.6
Q ss_pred cccccccc----ccccccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHH
Q psy19 281 SLHRRNIV----EFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVL 356 (494)
Q Consensus 281 sL~~Rgy~----~~~~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~ 356 (494)
.+.-|+|+ ...++|--|.+....+....+.+|.+.+|.--|+|+..-......+...+++.|.||-|-+.|+--..
T Consensus 9 k~r~~~~~~a~~d~~~~~HVPVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~ 88 (303)
T KOG2782|consen 9 KRRTRGYELADGDEVPSSHVPVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSD 88 (303)
T ss_pred hhhccceeecccccccccCCceehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhH
Confidence 34445664 34588888899999999999999999999999999998888887788899999999999999987663
No 311
>KOG3943|consensus
Probab=85.00 E-value=2.5 Score=41.55 Aligned_cols=59 Identities=19% Similarity=0.131 Sum_probs=46.6
Q ss_pred ceEEEEEEEEecCcccChHHHHHHHHHHHHhhc-CCCCCCCCCCEEEEEEEecCcceecc
Q psy19 217 LLKFRVTCNRVGKHTVTSMESERAFGGKLNDTY-FWLVDLDDYDIDINLQIRYNEAYVGL 275 (494)
Q Consensus 217 ~~tFrV~~~~~g~~~~~s~~~~~~v~~aI~d~~-~~~vdl~~pdi~i~v~l~~~~~~l~l 275 (494)
..+|.|...+.+..+.+.+++-+.|-++++.-- ..+|||+|||++|.|.+....+.+++
T Consensus 202 ~~tf~VE~k~RNn~~v~r~~vi~~V~~~Vc~l~se~~VdL~n~D~t~~Ve~~ks~I~~~V 261 (291)
T KOG3943|consen 202 KGTFQVEYKSRNNSHVNREEVIREVAGIVCTLNSENKVDLTNPDYTVVVEIIKAVICLSV 261 (291)
T ss_pred CceEEEEEEeccccchhHHHHHHHHHHHHHhcCccceeeccCCCeEEEEEeeeceeeeee
Confidence 369999999988666888888888888887532 34899999999999999876555443
No 312
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.41 E-value=10 Score=38.90 Aligned_cols=100 Identities=13% Similarity=0.134 Sum_probs=55.0
Q ss_pred HHhCCCCCCEEEEEcCCcChHHHHH---HhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC
Q psy19 305 RLASPIPGDVFLDPMCGGGTIPVEC---SLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF 380 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGSGtilIEA---A~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~ 380 (494)
..+...++++|+=.|| |.++..+ |+.. ++ .|+++|.+++.++.|++ .|.. ..+.....|+.++..
T Consensus 163 ~~~~~~~g~~VlV~G~--G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~~~~~~~ 231 (343)
T PRK09880 163 HQAGDLQGKRVFVSGV--GPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLARE----MGAD----KLVNPQNDDLDHYKA 231 (343)
T ss_pred HhcCCCCCCEEEEECC--CHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHH----cCCc----EEecCCcccHHHHhc
Confidence 3344557888887665 5555444 4332 45 68999999998888765 2321 111111112222211
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
..+.+|+|+- ..+.. ..+..+.+.|+++ |+++++.
T Consensus 232 ~~g~~D~vid------~~G~~--------~~~~~~~~~l~~~-G~iv~~G 266 (343)
T PRK09880 232 EKGYFDVSFE------VSGHP--------SSINTCLEVTRAK-GVMVQVG 266 (343)
T ss_pred cCCCCCEEEE------CCCCH--------HHHHHHHHHhhcC-CEEEEEc
Confidence 1234787765 22321 1233567789999 9988864
No 313
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=84.04 E-value=4.9 Score=45.56 Aligned_cols=127 Identities=13% Similarity=0.104 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCcChHHHHHHhcC-------C-----CCeEEEEeCCH---HHHHHHHHH-----------HHh-----cc
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSY-------P-----HTFFVCGDINE---KLVLKTQAN-----------VLH-----NS 359 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~-------~-----~~~v~G~Did~---~al~~Ar~N-----------l~~-----~g 359 (494)
..-+|+|.|=|+|.-.+.+...| + ..+++++|.+| +.+..+..+ +.. .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34689999999998666665555 2 25789999765 333332211 111 11
Q ss_pred CC-CCc-c--cceeeeeeccccc-cCCCCCeeEEEEcCCCccccCCccchHHHH-HHHHHHHhhcccCCCcEEEEEecCH
Q psy19 360 GN-LNR-E--LKVSPLVCNVRQL-CFKPACVDGIVTDLPFGKRVGSKSNNFLLY-RLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 360 ~~-~~~-~--~~i~~~~~Da~~l-~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly-~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
+. ... . -.+++..+|+.+. +--...+|++..|+ |.-.. +.+++ ..++..++++++|| |.++-.|...
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~-FsP~~-----np~~W~~~~~~~l~~~~~~~-~~~~t~t~a~ 209 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG-FAPAK-----NPDMWSPNLFNALARLARPG-ATLATFTSAG 209 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC-CCCcc-----ChhhccHHHHHHHHHHhCCC-CEEEEeehHH
Confidence 10 000 0 1345777898765 21125699999996 22111 12222 35777899999999 9988887765
Q ss_pred HHHHHHHHhccc
Q psy19 434 KHLIQALHITSA 445 (494)
Q Consensus 434 ~~l~~~l~~~~~ 445 (494)
. +++.+...|+
T Consensus 210 ~-vr~~l~~~GF 220 (662)
T PRK01747 210 F-VRRGLQEAGF 220 (662)
T ss_pred H-HHHHHHHcCC
Confidence 4 7888888774
No 314
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=83.87 E-value=1.6 Score=38.00 Aligned_cols=47 Identities=19% Similarity=0.083 Sum_probs=30.9
Q ss_pred HHHHHHHHHhC----CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHH
Q psy19 298 TIAYNMVRLAS----PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEK 346 (494)
Q Consensus 298 ~lAa~ll~la~----~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~ 346 (494)
.+|+.++.|=. ..+...++|+|||.|-+.--+.+. |..-+|+|.-.+
T Consensus 41 aIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R~R 91 (112)
T PF07757_consen 41 AIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDARRR 91 (112)
T ss_pred HHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhC--CCCccccccccc
Confidence 45666655432 223457999999999776655555 566788887543
No 315
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=83.41 E-value=1.7 Score=49.39 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhcccCCCcEEEEEecCH-----HHHHHH-HHhccccceeeeeEEEc
Q psy19 405 FLLYRLFLIEIGKIVRPQIGRAILLTSDR-----KHLIQA-LHITSALWKCRKQIKIN 456 (494)
Q Consensus 405 ~~ly~~fL~~l~rvLkpg~G~lvllt~~~-----~~l~~~-l~~~~~l~~~~~~~~v~ 456 (494)
..++..+++.+..+|+++ |+++.+.++. ..+.++ .++.| +...+.+++.
T Consensus 564 e~l~~~a~~~~rEll~dd-g~lv~y~ahk~~eaW~tlveA~~Rrag--l~iTr~~pv~ 618 (875)
T COG1743 564 ENLFREAFQAVRELLKDD-GRLVTYYAHKAPEAWITLVEAGWRRAG--LQITRAWPVR 618 (875)
T ss_pred HHHHHHHHHHHHHhcCCC-CeEEEEEeccCccchHHHHHHHhhhcC--ceeecccccc
Confidence 356777888999999998 9999875532 234444 55544 3555555553
No 316
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=82.77 E-value=2.4 Score=41.06 Aligned_cols=100 Identities=10% Similarity=0.024 Sum_probs=49.3
Q ss_pred CEEEEEcCCcChHHHHHHhc----CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc----C----
Q psy19 313 DVFLDPMCGGGTIPVECSLS----YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC----F---- 380 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~----~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~----~---- 380 (494)
+.|++.|.-.|+-++-.|.+ .+.++|+|+||+........... . +...+|+++++|..+.. .
T Consensus 34 d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~--h----p~~~rI~~i~Gds~d~~~~~~v~~~~ 107 (206)
T PF04989_consen 34 DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES--H----PMSPRITFIQGDSIDPEIVDQVRELA 107 (206)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----------TTEEEEES-SSSTHHHHTSGSS-
T ss_pred CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh--c----cccCceEEEECCCCCHHHHHHHHHhh
Confidence 58999999998877766654 25689999999765543322221 1 23467899999987652 1
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
......+||-|- .-..... . .-|+....++.+| +.+++
T Consensus 108 ~~~~~vlVilDs-----~H~~~hv---l-~eL~~y~plv~~G-~Y~IV 145 (206)
T PF04989_consen 108 SPPHPVLVILDS-----SHTHEHV---L-AELEAYAPLVSPG-SYLIV 145 (206)
T ss_dssp ---SSEEEEESS---------SSH---H-HHHHHHHHT--TT--EEEE
T ss_pred ccCCceEEEECC-----CccHHHH---H-HHHHHhCccCCCC-CEEEE
Confidence 112445777652 1111222 2 2233477789998 76554
No 317
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=81.78 E-value=1.7 Score=43.54 Aligned_cols=75 Identities=13% Similarity=0.201 Sum_probs=47.3
Q ss_pred eeeeeccccc--cCCCCCeeEEEEcCCCccccCC--------ccchH----------HH-HHHHHHHHhhcccCCCcEEE
Q psy19 369 SPLVCNVRQL--CFKPACVDGIVTDLPFGKRVGS--------KSNNF----------LL-YRLFLIEIGKIVRPQIGRAI 427 (494)
Q Consensus 369 ~~~~~Da~~l--~~~~~~~D~IVtNPPYG~r~~~--------~~~~~----------~l-y~~fL~~l~rvLkpg~G~lv 427 (494)
.+.++|+... ..++.++|+|+++|||...... ..+.. .. ....+.+..++|+++ |.++
T Consensus 18 ~i~~~d~~~~l~~~~~~svDli~tdppy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvl~~~-~~~~ 96 (302)
T COG0863 18 KIYKGDCLEILKSLPENSVDLIFTDPPYNNVKAGRKLGFLKRWLDAWDGWDSRGIYLKFILLQWLAEQKRVLKPG-GSLY 96 (302)
T ss_pred heecchHHHHHhhccccceeEEEcCCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHHhhheecCC-CEEE
Confidence 5777888654 3455699999999999654321 00111 11 234567888999999 9888
Q ss_pred EEecCH--HHHHHHHHhcc
Q psy19 428 LLTSDR--KHLIQALHITS 444 (494)
Q Consensus 428 llt~~~--~~l~~~l~~~~ 444 (494)
+..+.. ..+...+...|
T Consensus 97 v~~~~~~~~~~~~~~~~~g 115 (302)
T COG0863 97 VIDPFSNLARIEDIAKKLG 115 (302)
T ss_pred EECCchhhhHHHHHHHhCC
Confidence 877642 33455555544
No 318
>KOG0822|consensus
Probab=80.64 E-value=3.3 Score=45.36 Aligned_cols=102 Identities=20% Similarity=0.192 Sum_probs=71.0
Q ss_pred CCEEEEEcCCcChHHHHH---Hhc-CCCCeEEEEeCCHHHHHHHHH-HHHhccCCCCcccceeeeeeccccccCCCCCee
Q psy19 312 GDVFLDPMCGGGTIPVEC---SLS-YPHTFFVCGDINEKLVLKTQA-NVLHNSGNLNRELKVSPLVCNVRQLCFKPACVD 386 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEA---A~~-~~~~~v~G~Did~~al~~Ar~-Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D 386 (494)
..+|+=.|+|-|-+.-.. |.+ .....+++++.+|.|+-..+. |.+ ....+++++.+|.+.++.+....|
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~------~W~~~Vtii~~DMR~w~ap~eq~D 441 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFE------CWDNRVTIISSDMRKWNAPREQAD 441 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchh------hhcCeeEEEeccccccCCchhhcc
Confidence 456888999999875432 222 335789999999999866543 333 235678999999999975557899
Q ss_pred EEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEE
Q psy19 387 GIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA 426 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~l 426 (494)
++|+.. +|+..++ +|=+.-|..+.++|||. |..
T Consensus 442 I~VSEL-----LGSFGDN-ELSPECLDG~q~fLkpd-gIs 474 (649)
T KOG0822|consen 442 IIVSEL-----LGSFGDN-ELSPECLDGAQKFLKPD-GIS 474 (649)
T ss_pred chHHHh-----hccccCc-cCCHHHHHHHHhhcCCC-ceE
Confidence 999853 4443332 34456666789999998 743
No 319
>PTZ00357 methyltransferase; Provisional
Probab=80.36 E-value=4.9 Score=45.40 Aligned_cols=102 Identities=18% Similarity=0.126 Sum_probs=62.2
Q ss_pred EEEEEcCCcChHHHHH---Hhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCC----CcccceeeeeeccccccCCC---
Q psy19 314 VFLDPMCGGGTIPVEC---SLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNL----NRELKVSPLVCNVRQLCFKP--- 382 (494)
Q Consensus 314 ~VLDP~CGSGtilIEA---A~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~----~~~~~i~~~~~Da~~l~~~~--- 382 (494)
+|+=.|+|-|-+.-.+ +.. .-..+|+++|.|+.++...+.+......-. -..+.|+++..|.+.+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999875433 222 224689999999776655555543211110 01356899999999984321
Q ss_pred --------CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccC
Q psy19 383 --------ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRP 421 (494)
Q Consensus 383 --------~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkp 421 (494)
+.+|+||+-. +|+-.++ +|-..-|..+.+.||+
T Consensus 783 s~~~P~~~gKaDIVVSEL-----LGSFGDN-ELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSEL-----LGSLGDN-ELSPECLEAFHAQLED 823 (1072)
T ss_pred cccccccccccceehHhh-----hcccccc-cCCHHHHHHHHHhhhh
Confidence 2689999853 4443332 3344455556666664
No 320
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=76.09 E-value=5.7 Score=41.53 Aligned_cols=121 Identities=14% Similarity=0.110 Sum_probs=62.8
Q ss_pred CCEEEEEcCCcChHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEEEE
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~IVt 390 (494)
..++||.|.|.||-+.++-..||.. .++.++.++.. ...-..+.++-.......+..-++.|-..+|.. ..++++|.
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~l-rkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a-d~ytl~i~ 191 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPAL-RKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA-DLYTLAIV 191 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHH-HHHHHHHHhhcccccCCCCCCccchhccCCCcc-ceeehhhh
Confidence 3569999999999998888889864 34445666643 222223322211000001111223333333332 35665543
Q ss_pred -cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC-HHHHHHHHH
Q psy19 391 -DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD-RKHLIQALH 441 (494)
Q Consensus 391 -NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~-~~~l~~~l~ 441 (494)
| .+-....-.+++ ..++.+..++.|| |.+|++-+. +.-|+.+++
T Consensus 192 ~~-----eLl~d~~ek~i~-~~ie~lw~l~~~g-g~lVivErGtp~Gf~~I~r 237 (484)
T COG5459 192 LD-----ELLPDGNEKPIQ-VNIERLWNLLAPG-GHLVIVERGTPAGFERILR 237 (484)
T ss_pred hh-----hhccccCcchHH-HHHHHHHHhccCC-CeEEEEeCCCchhHHHHHH
Confidence 3 111111111222 3566788899998 999988653 333555544
No 321
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=75.75 E-value=13 Score=36.23 Aligned_cols=88 Identities=17% Similarity=0.115 Sum_probs=57.6
Q ss_pred HHHHHHHH-hCCCCCCEEEEEcCCcC----hHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee
Q psy19 299 IAYNMVRL-ASPIPGDVFLDPMCGGG----TIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373 (494)
Q Consensus 299 lAa~ll~l-a~~~~g~~VLDP~CGSG----tilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~ 373 (494)
.|..+-.| |+|+. ..+++..|+.| |+++.+|....+.+++++--++..+...++.+..+++ .+.++|+.+
T Consensus 29 ~aEfISAlAAG~nA-kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~----~~~vEfvvg 103 (218)
T PF07279_consen 29 VAEFISALAAGWNA-KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL----SDVVEFVVG 103 (218)
T ss_pred HHHHHHHHhccccc-eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc----cccceEEec
Confidence 34444444 46654 45677654433 6666666666678999999999988888888886654 345678888
Q ss_pred ccc-cccCCCCCeeEEEEc
Q psy19 374 NVR-QLCFKPACVDGIVTD 391 (494)
Q Consensus 374 Da~-~l~~~~~~~D~IVtN 391 (494)
+.. ++-..-..+|+++.|
T Consensus 104 ~~~e~~~~~~~~iDF~vVD 122 (218)
T PF07279_consen 104 EAPEEVMPGLKGIDFVVVD 122 (218)
T ss_pred CCHHHHHhhccCCCEEEEe
Confidence 753 332112468888886
No 322
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=74.58 E-value=13 Score=38.69 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=59.1
Q ss_pred CCCCEEEEEcCCc-ChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee-cccc-c-cCCC-CC
Q psy19 310 IPGDVFLDPMCGG-GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC-NVRQ-L-CFKP-AC 384 (494)
Q Consensus 310 ~~g~~VLDP~CGS-GtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~-Da~~-l-~~~~-~~ 384 (494)
.++.+|+=.|||. |-+.+.+|.......|+.+|.++.-++.|++-....- +..... +... . .... ..
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~--------~~~~~~~~~~~~~~~~t~g~g 238 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADV--------VVNPSEDDAGAEILELTGGRG 238 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeE--------eecCccccHHHHHHHHhCCCC
Confidence 3455899999986 4444555665555789999999999999987332110 001111 1110 0 1111 25
Q ss_pred eeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 385 VDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 385 ~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+|+++= ..+. ...+..+.++++++ |+++++.
T Consensus 239 ~D~vie------~~G~--------~~~~~~ai~~~r~g-G~v~~vG 269 (350)
T COG1063 239 ADVVIE------AVGS--------PPALDQALEALRPG-GTVVVVG 269 (350)
T ss_pred CCEEEE------CCCC--------HHHHHHHHHHhcCC-CEEEEEe
Confidence 887764 3342 23555788899999 9888863
No 323
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=72.82 E-value=24 Score=29.83 Aligned_cols=101 Identities=17% Similarity=0.108 Sum_probs=60.0
Q ss_pred cCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc----CCCCCeeEEEEcC
Q psy19 319 MCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC----FKPACVDGIVTDL 392 (494)
Q Consensus 319 ~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~----~~~~~~D~IVtNP 392 (494)
-||.|.++.+.+... .+..++.+|.|++.++.++..- +.++.+|+.+.. ..-...+.||+--
T Consensus 3 I~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~------------~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 3 IIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG------------VEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT------------SEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc------------cccccccchhhhHHhhcCccccCEEEEcc
Confidence 478888887776542 2347999999999977776421 257888887652 1224677777732
Q ss_pred CCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHhcc
Q psy19 393 PFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITS 444 (494)
Q Consensus 393 PYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~~~ 444 (494)
+ ....+ ..+....+-+-|. .+++..+.+.. ..+.+...|
T Consensus 71 ~------~d~~n-----~~~~~~~r~~~~~-~~ii~~~~~~~-~~~~l~~~g 109 (116)
T PF02254_consen 71 D------DDEEN-----LLIALLARELNPD-IRIIARVNDPE-NAELLRQAG 109 (116)
T ss_dssp S------SHHHH-----HHHHHHHHHHTTT-SEEEEEESSHH-HHHHHHHTT
T ss_pred C------CHHHH-----HHHHHHHHHHCCC-CeEEEEECCHH-HHHHHHHCC
Confidence 2 22111 1222345555676 78888888876 445555433
No 324
>KOG2352|consensus
Probab=72.64 E-value=15 Score=39.94 Aligned_cols=117 Identities=18% Similarity=0.223 Sum_probs=71.4
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee--ccccc---cCCCCCe
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC--NVRQL---CFKPACV 385 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~--Da~~l---~~~~~~~ 385 (494)
.+..++-.+-|+|.++.-.-...|...++++++||.+++.|+.+.....- ...++++..| +..++ ...+..|
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~---~r~~V~i~dGl~~~~~~~k~~~~~~~~ 371 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS---DRNKVHIADGLDFLQRTAKSQQEDICP 371 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh---hhhhhhHhhchHHHHHHhhccccccCC
Confidence 34567888889998887666667778999999999999999988753211 1111222111 11111 1123578
Q ss_pred eEEEEcC----CCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE--EecCHH
Q psy19 386 DGIVTDL----PFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL--LTSDRK 434 (494)
Q Consensus 386 D~IVtNP----PYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl--lt~~~~ 434 (494)
|+++.|- |-|..... -.-+-..+|..+..+|.|. |-+.+ ++.+..
T Consensus 372 dvl~~dvds~d~~g~~~pp---~~fva~~~l~~~k~~l~p~-g~f~inlv~r~~~ 422 (482)
T KOG2352|consen 372 DVLMVDVDSKDSHGMQCPP---PAFVAQVALQPVKMILPPR-GMFIINLVTRNSS 422 (482)
T ss_pred cEEEEECCCCCcccCcCCc---hHHHHHHHHHHHhhccCcc-ceEEEEEecCCcc
Confidence 9988752 22222211 2234556777888999998 86654 565543
No 325
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=71.55 E-value=7.7 Score=38.90 Aligned_cols=48 Identities=19% Similarity=0.362 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHH
Q psy19 298 TIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLK 350 (494)
Q Consensus 298 ~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~ 350 (494)
.++..|+.+... ...+.+|||||+|.+++.... ..++..|+|+..+..
T Consensus 13 ~l~~~i~~~~p~-~~~~yvEPF~Gggsv~l~~~~----~~~~lND~n~~Li~~ 60 (266)
T TIGR00571 13 SLLPEIKKHLPK-NFNCLVEPFVGGGAVFFNLNP----KRYLLNDINEDLINL 60 (266)
T ss_pred HHHHHHHHhcCc-ccCEEEEecCCcchhheeecC----cEEEEecCCHHHHHH
Confidence 455555555542 235899999999999875422 347778999876643
No 326
>KOG0022|consensus
Probab=70.37 E-value=9.4 Score=39.47 Aligned_cols=52 Identities=17% Similarity=0.046 Sum_probs=40.1
Q ss_pred HHHHHhCCCCCCEEEEEcCCcChH-HHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q psy19 302 NMVRLASPIPGDVFLDPMCGGGTI-PVECSLSYPHTFFVCGDINEKLVLKTQA 353 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGSGti-lIEAA~~~~~~~v~G~Did~~al~~Ar~ 353 (494)
++++.|.+++|.++.=.|+|+=.+ .++.|......+|+|+|+|++-.+.|++
T Consensus 183 Aa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 183 AAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred hhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 456778999999999998886444 3444554445689999999999998875
No 327
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=69.37 E-value=7.9 Score=34.46 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=43.8
Q ss_pred ceeeeeeccccc-cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHhccc
Q psy19 367 KVSPLVCNVRQL-CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSA 445 (494)
Q Consensus 367 ~i~~~~~Da~~l-~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~~~~ 445 (494)
.+.+..+|+.+. +--...+|+|..|+ |.-.... ++. -..++..+.+++++| |.++-.|.... +++.+...|+
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nP--elW--s~e~~~~l~~~~~~~-~~l~Tys~a~~-Vr~~L~~aGF 104 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNP--ELW--SEELFKKLARLSKPG-GTLATYSSAGA-VRRALQQAGF 104 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSG--GGS--SHHHHHHHHHHEEEE-EEEEES--BHH-HHHHHHHCTE
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCc--ccC--CHHHHHHHHHHhCCC-cEEEEeechHH-HHHHHHHcCC
Confidence 356778898764 21126899999996 4433221 221 124666899999998 98887777755 8888988883
No 328
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=68.31 E-value=34 Score=34.29 Aligned_cols=101 Identities=19% Similarity=0.176 Sum_probs=57.5
Q ss_pred HhCCCCCCEEEEEcCC-cChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc--ccCCC
Q psy19 306 LASPIPGDVFLDPMCG-GGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ--LCFKP 382 (494)
Q Consensus 306 la~~~~g~~VLDP~CG-SGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~--l~~~~ 382 (494)
.....++..||..+|| .|..++++|... +..+++++.++...+.++. .|.. ..+.....+... .....
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~----~g~~----~~~~~~~~~~~~~~~~~~~ 230 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE----LGAD----EVLNSLDDSPKDKKAAGLG 230 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH----hCCC----EEEcCCCcCHHHHHHHhcC
Confidence 3446678888886665 366666666643 6789999999988777654 2221 001111111100 01123
Q ss_pred CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
..+|+++-. .+.. ..+.++.+.|+++ |+++.+.
T Consensus 231 ~~~D~vid~------~g~~--------~~~~~~~~~l~~~-G~~v~~g 263 (338)
T cd08254 231 GGFDVIFDF------VGTQ--------PTFEDAQKAVKPG-GRIVVVG 263 (338)
T ss_pred CCceEEEEC------CCCH--------HHHHHHHHHhhcC-CEEEEEC
Confidence 468988753 1111 2334678899998 9888764
No 329
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=67.95 E-value=26 Score=36.89 Aligned_cols=62 Identities=11% Similarity=0.111 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhC---CCCCCEEEEEcCCcChHHHHHHhc----C----CCCeEEEEeCCHHHHHHHHHHHHhc
Q psy19 297 PTIAYNMVRLAS---PIPGDVFLDPMCGGGTIPVECSLS----Y----PHTFFVCGDINEKLVLKTQANVLHN 358 (494)
Q Consensus 297 e~lAa~ll~la~---~~~g~~VLDP~CGSGtilIEAA~~----~----~~~~v~G~Did~~al~~Ar~Nl~~~ 358 (494)
+.+|..++++-. ....-.++++|.|+|++.--.+.. . ....++-++.+++..+.-+.+++..
T Consensus 60 ella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 60 ELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 445555554322 223457999999999997554432 2 2478899999999999999998854
No 330
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=67.71 E-value=16 Score=38.32 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=39.0
Q ss_pred HHhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHH
Q psy19 305 RLASPIPGDVFLDPMCGG-GTIPVECSLSYPHTFFVCGDINEKLVLKTQAN 354 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~~v~G~Did~~al~~Ar~N 354 (494)
.++...++.+||..+||+ |.+++.+|.......++++|.++..++.++..
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 456677889999998887 77778777765323599999999988888764
No 331
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=66.76 E-value=15 Score=31.66 Aligned_cols=88 Identities=18% Similarity=0.160 Sum_probs=53.9
Q ss_pred CcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--c-CCCCCeeEEEEcCCCccc
Q psy19 321 GGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--C-FKPACVDGIVTDLPFGKR 397 (494)
Q Consensus 321 GSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~-~~~~~~D~IVtNPPYG~r 397 (494)
|.|.+++.+|+.. +++|+++|.++.-++.+++. |. ...+.....|+.+. . .....+|+||--
T Consensus 1 ~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~~~~~----Ga----~~~~~~~~~~~~~~i~~~~~~~~~d~vid~------ 65 (130)
T PF00107_consen 1 GVGLMAIQLAKAM-GAKVIATDRSEEKLELAKEL----GA----DHVIDYSDDDFVEQIRELTGGRGVDVVIDC------ 65 (130)
T ss_dssp HHHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHT----TE----SEEEETTTSSHHHHHHHHTTTSSEEEEEES------
T ss_pred ChHHHHHHHHHHc-CCEEEEEECCHHHHHHHHhh----cc----cccccccccccccccccccccccceEEEEe------
Confidence 4677888888776 49999999999988888753 21 11111112222111 1 122479988773
Q ss_pred cCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 398 VGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 398 ~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
.+.. ..++....+|+++ |+++++...
T Consensus 66 ~g~~--------~~~~~~~~~l~~~-G~~v~vg~~ 91 (130)
T PF00107_consen 66 VGSG--------DTLQEAIKLLRPG-GRIVVVGVY 91 (130)
T ss_dssp SSSH--------HHHHHHHHHEEEE-EEEEEESST
T ss_pred cCcH--------HHHHHHHHHhccC-CEEEEEEcc
Confidence 2221 2334677899999 999987543
No 332
>KOG2793|consensus
Probab=66.17 E-value=38 Score=33.88 Aligned_cols=109 Identities=16% Similarity=0.129 Sum_probs=58.1
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCC-Ccccceeeeeecccc---ccCCCCC-e
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNL-NRELKVSPLVCNVRQ---LCFKPAC-V 385 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~-~~~~~i~~~~~Da~~---l~~~~~~-~ 385 (494)
....||.+|.|+|--++.||..+ +..+...|+-. .+..-..|...++.+. .++..+.+...+... ..+.... +
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 35679999999998888887754 46777777744 3444444433332110 111122222222221 1111223 7
Q ss_pred eEEEE-cCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 386 DGIVT-DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 386 D~IVt-NPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
|+|+. |+=|..+. +..++.-++.+|..+ +.+++.++
T Consensus 164 DlilasDvvy~~~~---------~e~Lv~tla~ll~~~-~~i~l~~~ 200 (248)
T KOG2793|consen 164 DLILASDVVYEEES---------FEGLVKTLAFLLAKD-GTIFLAYP 200 (248)
T ss_pred cEEEEeeeeecCCc---------chhHHHHHHHHHhcC-CeEEEEEe
Confidence 87775 44344333 334455566677777 75555555
No 333
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=66.07 E-value=57 Score=31.13 Aligned_cols=100 Identities=16% Similarity=0.231 Sum_probs=56.8
Q ss_pred CCCCCCEEEEEcCCc-ChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc-c-cCCCCC
Q psy19 308 SPIPGDVFLDPMCGG-GTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ-L-CFKPAC 384 (494)
Q Consensus 308 ~~~~g~~VLDP~CGS-GtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~-l-~~~~~~ 384 (494)
...++.+||..++|+ |...+..+... +..+++++.++...+.++.. +.. ..+.....+... + ......
T Consensus 131 ~~~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~----g~~----~~~~~~~~~~~~~~~~~~~~~ 201 (271)
T cd05188 131 VLKPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKEL----GAD----HVIDYKEEDLEEELRLTGGGG 201 (271)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHh----CCc----eeccCCcCCHHHHHHHhcCCC
Confidence 336788999999886 55555555543 57899999998777666432 210 001111001100 0 112246
Q ss_pred eeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 385 VDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 385 ~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+|+++.+- +.. ..+..+.+.|+++ |+++.+..
T Consensus 202 ~d~vi~~~------~~~--------~~~~~~~~~l~~~-G~~v~~~~ 233 (271)
T cd05188 202 ADVVIDAV------GGP--------ETLAQALRLLRPG-GRIVVVGG 233 (271)
T ss_pred CCEEEECC------CCH--------HHHHHHHHhcccC-CEEEEEcc
Confidence 89988742 211 1223466788898 99887754
No 334
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=64.31 E-value=14 Score=36.45 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=34.8
Q ss_pred CCEEEEEcCCcChHHHHHHhcCC--------CCeEEEEeCCHHHHHHHHHHHHh
Q psy19 312 GDVFLDPMCGGGTIPVECSLSYP--------HTFFVCGDINEKLVLKTQANVLH 357 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~~--------~~~v~G~Did~~al~~Ar~Nl~~ 357 (494)
.-.|++.|+|+|+++.-.+..+. ...++-+|++|.+.+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 46899999999999877665422 35799999999998888888764
No 335
>PF05869 Dam: DNA N-6-adenine-methyltransferase (Dam); InterPro: IPR008593 This family consists of several bacterial and phage DNA N-6-adenine-methyltransferase (Dam) like sequences [].; GO: 0003677 DNA binding, 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine
Probab=63.97 E-value=22 Score=33.82 Aligned_cols=35 Identities=9% Similarity=0.234 Sum_probs=21.7
Q ss_pred eEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcE-EEEEec
Q psy19 386 DGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGR-AILLTS 431 (494)
Q Consensus 386 D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~-lvllt~ 431 (494)
+.|.+||||+..+ ..|++.+.+.-..| +. +++|.+
T Consensus 65 g~vf~NPPYs~~i----------~~wv~Ka~~e~~~g-~~~VvLL~~ 100 (181)
T PF05869_consen 65 GRVFCNPPYSRGI----------GPWVEKAIEEYERG-NQTVVLLPP 100 (181)
T ss_pred ceEEecCchhhhH----------HHHHHHHHHHHHhC-CcEEEEEec
Confidence 5789999999641 24455555555555 55 445554
No 336
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=63.85 E-value=49 Score=34.10 Aligned_cols=47 Identities=15% Similarity=0.098 Sum_probs=34.3
Q ss_pred HhCCCCCCEEEEEcC--CcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q psy19 306 LASPIPGDVFLDPMC--GGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353 (494)
Q Consensus 306 la~~~~g~~VLDP~C--GSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~ 353 (494)
.+..++|++||=.++ |.|.+++.+|+.. ++.+++++.++.-.+.++.
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~ 201 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKN 201 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH
Confidence 356778999888877 3666777766653 6789999988877666653
No 337
>KOG2651|consensus
Probab=63.27 E-value=22 Score=37.75 Aligned_cols=53 Identities=19% Similarity=0.123 Sum_probs=40.5
Q ss_pred HHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q psy19 300 AYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~ 353 (494)
...+-.++...+-..|+|.|.|-|.++-..+..+ +..|+|+|-|....+.|++
T Consensus 142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 3333344555666789999999999988776654 6899999999888877764
No 338
>TIGR01712 phage_N6A_met phage N-6-adenine-methyltransferase. This is a model for a phage-borne DNA N-6-adenine-methyltransferase.
Probab=62.51 E-value=8.8 Score=35.96 Aligned_cols=35 Identities=11% Similarity=0.312 Sum_probs=23.6
Q ss_pred EEEEcCCCccccCCccchHHHHHHHHHHHhhccc-CCCcEEEEEecCH
Q psy19 387 GIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVR-PQIGRAILLTSDR 433 (494)
Q Consensus 387 ~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLk-pg~G~lvllt~~~ 433 (494)
.|.+||||+.- ..|++.+++.++ .| +.+|+|.+..
T Consensus 64 ~vf~NPPYS~~-----------~~~v~kaae~~~~~g-~~~VmLlpa~ 99 (166)
T TIGR01712 64 AVWLNPPYSRP-----------DIFVNKTAWFTEARQ-AAEVILIEAD 99 (166)
T ss_pred eEEecCCCCcH-----------HHHHHHHHHHHHhhC-CeEEEEEecC
Confidence 79999999842 245556665444 55 7888887743
No 339
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=61.14 E-value=28 Score=35.13 Aligned_cols=104 Identities=14% Similarity=0.107 Sum_probs=55.7
Q ss_pred CEEEEEcCCcChH--HHHHHhc-CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--CC------
Q psy19 313 DVFLDPMCGGGTI--PVECSLS-YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC--FK------ 381 (494)
Q Consensus 313 ~~VLDP~CGSGti--lIEAA~~-~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~--~~------ 381 (494)
.-+||+|||-=|- .-|.|+. .|+++|+-+|+||-++..++.-+.... .....++++|+++.. +.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-----~g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-----RGRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-----TSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-----CccEEEEeCCCCCHHHHhcCHHHHh
Confidence 4699999995443 3455543 678999999999999999998887432 123578999987742 11
Q ss_pred ----CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 382 ----PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 382 ----~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+..+ .+++.--.. .+.+..+. ..+++.+...|.|| ..+++
T Consensus 145 ~lD~~rPV-avll~~vLh-~v~D~~dp----~~iv~~l~d~lapG-S~L~i 188 (267)
T PF04672_consen 145 LLDFDRPV-AVLLVAVLH-FVPDDDDP----AGIVARLRDALAPG-SYLAI 188 (267)
T ss_dssp C--TTS---EEEECT-GG-GS-CGCTH----HHHHHHHHCCS-TT--EEEE
T ss_pred cCCCCCCe-eeeeeeeec-cCCCccCH----HHHHHHHHHhCCCC-ceEEE
Confidence 1223 333321110 12232333 35666789999998 87777
No 340
>KOG2098|consensus
Probab=61.11 E-value=18 Score=38.77 Aligned_cols=84 Identities=14% Similarity=0.275 Sum_probs=47.5
Q ss_pred ceeeeeeccccccCC-CCCeeEEEEcCCCccccCCc----cchHHHHHHHHHHHhh----cccCCCcEEEE-EecCHHHH
Q psy19 367 KVSPLVCNVRQLCFK-PACVDGIVTDLPFGKRVGSK----SNNFLLYRLFLIEIGK----IVRPQIGRAIL-LTSDRKHL 436 (494)
Q Consensus 367 ~i~~~~~Da~~l~~~-~~~~D~IVtNPPYG~r~~~~----~~~~~ly~~fL~~l~r----vLkpg~G~lvl-lt~~~~~l 436 (494)
..+++++|++.+.+. -+.|.+|++||||...+... .+. ++.+ .|... |.+++ +|+..-.+
T Consensus 371 p~QWI~CDiR~~dm~iLGkFaVVmADPpWdIHMeLPYGTm~Dd---------Emr~L~vp~LQdd-GlIFLWVTGRAmEL 440 (591)
T KOG2098|consen 371 PPQWICCDIRYLDMSILGKFAVVMADPPWDIHMELPYGTMTDD---------EMRRLNVPVLQDD-GLIFLWVTGRAMEL 440 (591)
T ss_pred CcceEEeeceeeeeeeeceeEEEeeCCCccceeecCccccchH---------HhhcCCCcccccC-cEEEEEEcchHHHH
Confidence 346899999888543 37999999999997665322 111 1222 35555 76665 66653223
Q ss_pred -HHHHHhccccceeeeeEEEccCCce
Q psy19 437 -IQALHITSALWKCRKQIKINMSGMK 461 (494)
Q Consensus 437 -~~~l~~~~~l~~~~~~~~v~~Ggl~ 461 (494)
++.+.--|. -++...++|....|.
T Consensus 441 GrecLnlWGY-~rVdEiiWVKTNQLq 465 (591)
T KOG2098|consen 441 GRECLNLWGY-ERVDEIIWVKTNQLQ 465 (591)
T ss_pred HHHHHHhhch-hhhheeEEEeechhh
Confidence 333433222 244445555555554
No 341
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=60.41 E-value=87 Score=31.24 Aligned_cols=101 Identities=12% Similarity=0.060 Sum_probs=57.4
Q ss_pred HHhCCCCCCEEEEEc--CCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc-c-cC
Q psy19 305 RLASPIPGDVFLDPM--CGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ-L-CF 380 (494)
Q Consensus 305 ~la~~~~g~~VLDP~--CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~-l-~~ 380 (494)
..+...+|++||=.+ -|.|.+++.+|+.. ++.+++++.+++-.+.++. .|. ...+.....|+.. + ..
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~----~Ga----~~vi~~~~~~~~~~v~~~ 207 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKE----LGF----DAVFNYKTVSLEEALKEA 207 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCC----CEEEeCCCccHHHHHHHH
Confidence 456678888887665 34566667667654 6789999988887776654 232 1111111112111 1 11
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
....+|+|+- ..+. ..+..+.+.|+++ |+++.+.
T Consensus 208 ~~~gvd~vld------~~g~---------~~~~~~~~~l~~~-G~iv~~g 241 (329)
T cd08294 208 APDGIDCYFD------NVGG---------EFSSTVLSHMNDF-GRVAVCG 241 (329)
T ss_pred CCCCcEEEEE------CCCH---------HHHHHHHHhhccC-CEEEEEc
Confidence 1245888774 1221 1123577788998 9987653
No 342
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=60.13 E-value=5.4 Score=40.38 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=32.2
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHH
Q psy19 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLK 350 (494)
Q Consensus 299 lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~ 350 (494)
++..++.+.. ... ..++||||+|.+.|..+.. ...+..||++..+..
T Consensus 15 l~~~i~~~lP-~~~-~y~EPF~GggaV~i~~~~~---~~~i~~Din~~Lvn~ 61 (274)
T COG0338 15 LLDQIIPHLP-EGV-SYIEPFVGGGAVFINLAAK---KKYILNDINPDLVNL 61 (274)
T ss_pred HHHHHHHhCC-CCc-eeeCCccCcceeeeehhhh---hhhhHhcCCHHHHHH
Confidence 3444444433 223 9999999999998877653 357778888877654
No 343
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=59.14 E-value=72 Score=32.78 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=31.3
Q ss_pred HHhCCCCCCEEEEEcCCcChHH---HHHHhcCCCC-eEEEEeCCHHHHHHHHH
Q psy19 305 RLASPIPGDVFLDPMCGGGTIP---VECSLSYPHT-FFVCGDINEKLVLKTQA 353 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGSGtil---IEAA~~~~~~-~v~G~Did~~al~~Ar~ 353 (494)
..+...++++||=.+| |.++ +.+|+.. ++ .++++|.++...+.++.
T Consensus 170 ~~~~~~~g~~VlV~G~--g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 170 NTGGVKRGDSVAVIGC--GGVGDAAIAGAALA-GASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred hccCCCCCCEEEEECC--CHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH
Confidence 3456778888887765 4554 4444443 55 49999999988877754
No 344
>PRK10904 DNA adenine methylase; Provisional
Probab=59.07 E-value=38 Score=34.04 Aligned_cols=28 Identities=7% Similarity=-0.043 Sum_probs=19.9
Q ss_pred eeeeeeccccccCCCCCeeEEEEcCCCc
Q psy19 368 VSPLVCNVRQLCFKPACVDGIVTDLPFG 395 (494)
Q Consensus 368 i~~~~~Da~~l~~~~~~~D~IVtNPPYG 395 (494)
+.+.+.|+.++--....-|+|.+||||-
T Consensus 158 v~i~~~Df~~~i~~~~~~~fvYlDPPY~ 185 (271)
T PRK10904 158 AFFYCESYADSMARADKGSVVYCDPPYA 185 (271)
T ss_pred CEEEECCHHHHHhhcCCCcEEEECCCCC
Confidence 4688889877621123557999999994
No 345
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=56.98 E-value=26 Score=36.71 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=40.8
Q ss_pred HHHHHhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q psy19 302 NMVRLASPIPGDVFLDPMCGG-GTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~~v~G~Did~~al~~Ar~ 353 (494)
+.++-+++++|++|.=.|||. |--.|..|......+|+++|+++.-++.|++
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 356778889999999999875 4445555665555789999999999999886
No 346
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=56.57 E-value=1.2e+02 Score=30.64 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=53.4
Q ss_pred CCCCEEEEEcCCc-ChHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeE
Q psy19 310 IPGDVFLDPMCGG-GTIPVECSLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG 387 (494)
Q Consensus 310 ~~g~~VLDP~CGS-GtilIEAA~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~ 387 (494)
.++.+||-.+||. |.+++.+|+.. +. .+++++.++...+.++. + +.+ ..+.....+...+......+|+
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~-~---g~~----~vi~~~~~~~~~~~~~~~~vd~ 234 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARA-M---GAD----ETVNLARDPLAAYAADKGDFDV 234 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH-c---CCC----EEEcCCchhhhhhhccCCCccE
Confidence 3778888777765 55666666543 55 78999998887775543 2 210 0111111111122111235888
Q ss_pred EEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 388 IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
++-.- | .. ..+..+.+.|+++ |+++.+.
T Consensus 235 vld~~--g----~~--------~~~~~~~~~L~~~-G~~v~~g 262 (339)
T cd08232 235 VFEAS--G----AP--------AALASALRVVRPG-GTVVQVG 262 (339)
T ss_pred EEECC--C----CH--------HHHHHHHHHHhcC-CEEEEEe
Confidence 87621 1 11 1233577788998 9988764
No 347
>KOG0024|consensus
Probab=56.31 E-value=25 Score=36.56 Aligned_cols=51 Identities=16% Similarity=0.047 Sum_probs=40.0
Q ss_pred HHHHhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q psy19 303 MVRLASPIPGDVFLDPMCGG-GTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~~v~G~Did~~al~~Ar~ 353 (494)
-..+++.+.|.+||=.|||. |-..+-+|+......|+.+|+++..++.|++
T Consensus 161 Acr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 161 ACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred hhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 35677889999999998885 4334444555545789999999999999998
No 348
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=56.18 E-value=26 Score=31.23 Aligned_cols=42 Identities=19% Similarity=-0.028 Sum_probs=28.3
Q ss_pred EEcCCcC--hHHHHHH--hcCCCCeEEEEeCCHHHHHHHHHH--HHhc
Q psy19 317 DPMCGGG--TIPVECS--LSYPHTFFVCGDINEKLVLKTQAN--VLHN 358 (494)
Q Consensus 317 DP~CGSG--tilIEAA--~~~~~~~v~G~Did~~al~~Ar~N--l~~~ 358 (494)
|+|++.| +..+..+ ...++..++++|-+|..++..+.| +..+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 6655543 456678999999999999999999 5544
No 349
>KOG3924|consensus
Probab=55.68 E-value=11 Score=39.98 Aligned_cols=103 Identities=16% Similarity=0.005 Sum_probs=66.9
Q ss_pred cccccccccchHHHHHHHHH---HhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHh-----
Q psy19 286 NIVEFNITTLKPTIAYNMVR---LASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH----- 357 (494)
Q Consensus 286 gy~~~~~a~L~e~lAa~ll~---la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~----- 357 (494)
+|..+......|+....|.. -+...++++..|||.|.|.+...+|.......-+|+++....-..|..|...
T Consensus 164 hYk~~ss~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~ 243 (419)
T KOG3924|consen 164 HYKSFSSETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLM 243 (419)
T ss_pred hhccccccchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHH
Confidence 55544455556666665554 4567899999999999999987776664445677888887777777766543
Q ss_pred --ccCCCCcccceeeeeeccccccCC---CCCeeEEEEc
Q psy19 358 --NSGNLNRELKVSPLVCNVRQLCFK---PACVDGIVTD 391 (494)
Q Consensus 358 --~g~~~~~~~~i~~~~~Da~~l~~~---~~~~D~IVtN 391 (494)
+|.. ...+..+++++...... ....++|+.|
T Consensus 244 k~fGk~---~~~~~~i~gsf~~~~~v~eI~~eatvi~vN 279 (419)
T KOG3924|consen 244 KHFGKK---PNKIETIHGSFLDPKRVTEIQTEATVIFVN 279 (419)
T ss_pred HHhCCC---cCceeecccccCCHHHHHHHhhcceEEEEe
Confidence 3321 23567788887654211 1345666665
No 350
>PRK10904 DNA adenine methylase; Provisional
Probab=54.26 E-value=20 Score=36.07 Aligned_cols=49 Identities=18% Similarity=0.455 Sum_probs=33.8
Q ss_pred HHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q psy19 298 TIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQ 352 (494)
Q Consensus 298 ~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar 352 (494)
.++..|+.+... ..+.++||||+|++++.. . ...++..|+|+..+..-+
T Consensus 16 ~l~~~i~~~~P~--~~~yvEPF~GggaV~l~~--~--~~~~ilND~n~~Lin~y~ 64 (271)
T PRK10904 16 PLLDDIKRHLPK--GECLIEPFVGAGSVFLNT--D--FSRYILADINSDLISLYN 64 (271)
T ss_pred HHHHHHHHhCCC--CCcEEeccCCcceeeEec--C--CCeEEEEeCCHHHHHHHH
Confidence 455555555542 368999999999987743 2 235677899998876543
No 351
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=52.93 E-value=54 Score=32.84 Aligned_cols=28 Identities=11% Similarity=-0.004 Sum_probs=19.8
Q ss_pred eeeeeeccccccCCCCCeeEEEEcCCCc
Q psy19 368 VSPLVCNVRQLCFKPACVDGIVTDLPFG 395 (494)
Q Consensus 368 i~~~~~Da~~l~~~~~~~D~IVtNPPYG 395 (494)
+.+.++|+.++--....-|+|.+||||-
T Consensus 156 v~i~~~Df~~~i~~~~~~dfvYlDPPY~ 183 (266)
T TIGR00571 156 TTFLCGSFEKILAMVDDDSFVYCDPPYL 183 (266)
T ss_pred CEEEECCHHHHHhhcCCCCEEEECCCCC
Confidence 4688889877621123456999999994
No 352
>KOG0821|consensus
Probab=51.96 E-value=52 Score=32.51 Aligned_cols=98 Identities=12% Similarity=0.068 Sum_probs=66.9
Q ss_pred ccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeee
Q psy19 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372 (494)
Q Consensus 293 a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~ 372 (494)
.-|..++...++.-|+.-.++-|+.++.|.|+|.-...... ..++.-+++|+..+...+.-.+++. .+..+.+
T Consensus 32 fLMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~-~~RL~vVE~D~RFip~LQ~L~EAa~------~~~~IHh 104 (326)
T KOG0821|consen 32 FLMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNAD-VARLLVVEKDTRFIPGLQMLSEAAP------GKLRIHH 104 (326)
T ss_pred HHhhhHHHHHHHHhccccccceeEEecCCCCchhHHHHhcc-hhheeeeeeccccChHHHHHhhcCC------cceEEec
Confidence 34777888888888887778899999999999865544331 2467888999988887776666432 2345666
Q ss_pred ecccccc------------CCCC-CeeEEEEcCCCccc
Q psy19 373 CNVRQLC------------FKPA-CVDGIVTDLPFGKR 397 (494)
Q Consensus 373 ~Da~~l~------------~~~~-~~D~IVtNPPYG~r 397 (494)
+|+.... +.+. .--.||-|.||...
T Consensus 105 ~D~LR~~I~~~~~~~~~Rpw~d~~p~~H~IGNLPf~i~ 142 (326)
T KOG0821|consen 105 GDVLRFKIEKAFSESLKRPWEDDPPNVHIIGNLPFSVS 142 (326)
T ss_pred cccceehHHhhcchhhcCCcccCCCceEEeccCCcccc
Confidence 6665432 2221 22478999998643
No 353
>KOG1099|consensus
Probab=51.61 E-value=29 Score=34.45 Aligned_cols=115 Identities=17% Similarity=0.113 Sum_probs=68.8
Q ss_pred chHHHHHHHHHHhC----CCCCCEEEEEcCCcChHHHHHHhcC----C-----CCeEEEEeCCHHHHHHHHHHHHhccCC
Q psy19 295 LKPTIAYNMVRLAS----PIPGDVFLDPMCGGGTIPVECSLSY----P-----HTFFVCGDINEKLVLKTQANVLHNSGN 361 (494)
Q Consensus 295 L~e~lAa~ll~la~----~~~g~~VLDP~CGSGtilIEAA~~~----~-----~~~v~G~Did~~al~~Ar~Nl~~~g~~ 361 (494)
.|..-|.-|+++-. .++-.+++|+|+-.|+-.--+.... + ...|+++|+.+.+
T Consensus 21 wRARSAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-------------- 86 (294)
T KOG1099|consen 21 WRARSAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-------------- 86 (294)
T ss_pred chHHhHHHHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------------
Confidence 44444555555432 1234679999999998876665541 1 1249999998753
Q ss_pred CCcccceeeeeecccccc--------CCCCCeeEEEEcCCCccccCCccch-----HHHHHHHHHHHhhcccCCCcEEEE
Q psy19 362 LNRELKVSPLVCNVRQLC--------FKPACVDGIVTDLPFGKRVGSKSNN-----FLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 362 ~~~~~~i~~~~~Da~~l~--------~~~~~~D~IVtNPPYG~r~~~~~~~-----~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
++.. +.-+++|++... |.....|+||||=--. -.|.+ ++ .+|.-..|.-...+|+|| |.++-
T Consensus 87 -PI~G-V~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPD-vTGlH-d~DEy~Q~qLllaAl~i~t~Vlk~G-g~FVa 161 (294)
T KOG1099|consen 87 -PIEG-VIQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPD-VTGLH-DLDEYVQAQLLLAALNIATCVLKPG-GSFVA 161 (294)
T ss_pred -ccCc-eEEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCC-ccccc-cHHHHHHHHHHHHHHHHHhheecCC-Ceeeh
Confidence 2322 345678887642 3445889999983110 01111 22 344555667778899999 87763
No 354
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=51.02 E-value=1.9e+02 Score=29.09 Aligned_cols=101 Identities=11% Similarity=0.053 Sum_probs=56.7
Q ss_pred HHhCCCCCCEEEEEcC--CcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeee-ccccc--c
Q psy19 305 RLASPIPGDVFLDPMC--GGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC-NVRQL--C 379 (494)
Q Consensus 305 ~la~~~~g~~VLDP~C--GSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~-Da~~l--~ 379 (494)
..+..++|++||=.++ |.|.+++.+|+. .++.+++++.+++-.+.++. .|.. ..+..... +.... .
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~-~G~~Vi~~~~s~~~~~~~~~----lGa~----~vi~~~~~~~~~~~~~~ 202 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKL-KGCKVVGAAGSDEKVAYLKK----LGFD----VAFNYKTVKSLEETLKK 202 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHH----cCCC----EEEeccccccHHHHHHH
Confidence 4566778888876663 355666666654 36789999988887777643 2321 01111111 11111 1
Q ss_pred CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 380 FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 380 ~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
.....+|+|+- . .+.. .+..+.+.|+++ |+++.+.
T Consensus 203 ~~~~gvdvv~d-~-----~G~~---------~~~~~~~~l~~~-G~iv~~G 237 (325)
T TIGR02825 203 ASPDGYDCYFD-N-----VGGE---------FSNTVIGQMKKF-GRIAICG 237 (325)
T ss_pred hCCCCeEEEEE-C-----CCHH---------HHHHHHHHhCcC-cEEEEec
Confidence 11236888874 1 2211 123567789998 9988764
No 355
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=50.65 E-value=1.3e+02 Score=30.30 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=55.6
Q ss_pred HHhCCCCC--CEEEEEcC--CcChHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc-c
Q psy19 305 RLASPIPG--DVFLDPMC--GGGTIPVECSLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ-L 378 (494)
Q Consensus 305 ~la~~~~g--~~VLDP~C--GSGtilIEAA~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~-l 378 (494)
..+..+++ ++||=-++ |.|.+++..|+.. ++ .+++++.+++-.+.++..+ |. ...+.....|+.+ +
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~l---Ga----~~vi~~~~~~~~~~i 217 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSEL---GF----DAAINYKTDNVAERL 217 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhc---CC----cEEEECCCCCHHHHH
Confidence 34456655 77776664 4666666666653 66 7999998887766665532 21 1111111112111 0
Q ss_pred -cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 379 -CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 379 -~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
......+|+|+-. .+.. .+..+.+.|+++ |+++.+.
T Consensus 218 ~~~~~~gvd~vid~------~g~~---------~~~~~~~~l~~~-G~iv~~G 254 (345)
T cd08293 218 RELCPEGVDVYFDN------VGGE---------ISDTVISQMNEN-SHIILCG 254 (345)
T ss_pred HHHCCCCceEEEEC------CCcH---------HHHHHHHHhccC-CEEEEEe
Confidence 1112468888741 2221 113567789998 9988764
No 356
>TIGR01213 conserved hypothetical protein TIGR01213. Members of this family show twilight-zone similarity to several predicted RNA pseudouridine synthases. All trusted members of this family are archaeal. Several eukaryotic homologs lack N-terminal homology including two CXXC motifs.
Probab=50.50 E-value=22 Score=37.75 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCEEEEEEEecCcceeccc---cccc------cccccccc--ccccccchHHHHHHH
Q psy19 235 MESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLP---VTQT------SLHRRNIV--EFNITTLKPTIAYNM 303 (494)
Q Consensus 235 ~~~~~~v~~aI~d~~~~~vdl~~pdi~i~v~l~~~~~~l~l~---lsg~------sL~~Rgy~--~~~~a~L~e~lAa~l 303 (494)
.++.|.+|..|..+.+..||..+||+.|.+.+..+.+.+-+. +.|. .+-+..|. ...+.+.-+-++..+
T Consensus 116 ~E~nRevGk~~~~~~gk~~d~~~Pdv~i~vd~~~~~v~vq~~pifi~GRY~Kl~R~ipQT~W~~~~~~~~SVeelI~~~v 195 (388)
T TIGR01213 116 REFNREVGKLFVKRTGKEVDFERPDLVIMVEFEYEFVDVQVNSLFIYGRYRKLVRGIPQTRWPCRKNYPESVEELIASPF 195 (388)
T ss_pred HHHhHHHHHHHHHHhCCCccCCCCCEEEEEEcCCCeEEEEECcEEEEEEEeecccCCCCCccccCCCcCchHHHHHHHHH
Confidence 457788999999999999999999999999998887665322 1221 11122221 123566667777766
Q ss_pred HHHhC
Q psy19 304 VRLAS 308 (494)
Q Consensus 304 l~la~ 308 (494)
....+
T Consensus 196 ~~~~~ 200 (388)
T TIGR01213 196 LKATG 200 (388)
T ss_pred HHHhC
Confidence 66654
No 357
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=48.76 E-value=1.1e+02 Score=34.31 Aligned_cols=91 Identities=11% Similarity=0.007 Sum_probs=55.7
Q ss_pred CCcChHHHHHHhc--CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C---CCCCeeEEEEcCC
Q psy19 320 CGGGTIPVECSLS--YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F---KPACVDGIVTDLP 393 (494)
Q Consensus 320 CGSGtilIEAA~~--~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~---~~~~~D~IVtNPP 393 (494)
||.|.++...+.. -.+..++.+|.|++.++.+++ .|. .++.+|+.+.. + .-...|++|+-
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g~--------~v~~GDat~~~~L~~agi~~A~~vv~~-- 471 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YGY--------KVYYGDATQLELLRAAGAEKAEAIVIT-- 471 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CCC--------eEEEeeCCCHHHHHhcCCccCCEEEEE--
Confidence 8888888777654 235789999999999988764 232 57889988753 1 12356766662
Q ss_pred CccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecCHH
Q psy19 394 FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRK 434 (494)
Q Consensus 394 YG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~ 434 (494)
.++...+..+. ...|.+.|. .+++.-+.+..
T Consensus 472 ----~~d~~~n~~i~-----~~~r~~~p~-~~IiaRa~~~~ 502 (601)
T PRK03659 472 ----CNEPEDTMKIV-----ELCQQHFPH-LHILARARGRV 502 (601)
T ss_pred ----eCCHHHHHHHH-----HHHHHHCCC-CeEEEEeCCHH
Confidence 23322222111 244455566 66666666654
No 358
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=48.42 E-value=94 Score=31.33 Aligned_cols=47 Identities=19% Similarity=0.098 Sum_probs=31.7
Q ss_pred HhCCCCCCEEEEEcCC-cChHHHHHHhcCCCC-eEEEEeCCHHHHHHHHH
Q psy19 306 LASPIPGDVFLDPMCG-GGTIPVECSLSYPHT-FFVCGDINEKLVLKTQA 353 (494)
Q Consensus 306 la~~~~g~~VLDP~CG-SGtilIEAA~~~~~~-~v~G~Did~~al~~Ar~ 353 (494)
.+..+++.+||--++| .|.+++..|+.. +. .+++++.++...+.++.
T Consensus 162 ~~~~~~~~~VlI~g~g~vg~~~iqlak~~-g~~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 162 LAGIKPGSTVAVIGAGPVGLCAVAGARLL-GAARIIAVDSNPERLDLAKE 210 (347)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Confidence 4456678888886654 355666666654 43 78888888877766654
No 359
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=48.14 E-value=15 Score=38.10 Aligned_cols=13 Identities=38% Similarity=0.491 Sum_probs=11.2
Q ss_pred CeeEEEEcCCCcc
Q psy19 384 CVDGIVTDLPFGK 396 (494)
Q Consensus 384 ~~D~IVtNPPYG~ 396 (494)
..|+|||||||..
T Consensus 135 eADIVVTNPPFSL 147 (336)
T PF13651_consen 135 EADIVVTNPPFSL 147 (336)
T ss_pred cCCEEEeCCCcHH
Confidence 6899999999953
No 360
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.87 E-value=2.5e+02 Score=27.23 Aligned_cols=77 Identities=14% Similarity=0.078 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCc-ChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C------
Q psy19 311 PGDVFLDPMCGG-GTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F------ 380 (494)
Q Consensus 311 ~g~~VLDP~CGS-GtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~------ 380 (494)
.+.++|=.|+++ +.|+.+.|..+ .+..|+..+.+.+..+...+-....+ .+.++.+|+.+.. .
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~-------~~~~~~~D~~~~~~v~~~~~~ 81 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD-------APIFLPLDVREPGQLEAVFAR 81 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc-------cceEEecCcCCHHHHHHHHHH
Confidence 356888888887 47887777653 35778888887654332222222111 1234566765431 0
Q ss_pred ---CCCCeeEEEEcCCC
Q psy19 381 ---KPACVDGIVTDLPF 394 (494)
Q Consensus 381 ---~~~~~D~IVtNPPY 394 (494)
.-+.+|++|.|.-+
T Consensus 82 ~~~~~g~ld~lv~nAg~ 98 (258)
T PRK07533 82 IAEEWGRLDFLLHSIAF 98 (258)
T ss_pred HHHHcCCCCEEEEcCcc
Confidence 11578999999744
No 361
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=47.85 E-value=3.2e+02 Score=27.76 Aligned_cols=124 Identities=15% Similarity=0.135 Sum_probs=66.3
Q ss_pred cccchHHHHHHHHHHhCCCCCCEEEEEcCCcChHHHH---H-HhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccc
Q psy19 292 ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVE---C-SLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELK 367 (494)
Q Consensus 292 ~a~L~e~lAa~ll~la~~~~g~~VLDP~CGSGtilIE---A-A~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~ 367 (494)
.+.+-...|+.+.... .+..++|+|.|+-+=.-. + +...--.+.+.+|++...++...+-+..-- ....
T Consensus 62 EaaIl~~~a~Eia~~~---g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y----~~l~ 134 (321)
T COG4301 62 EAAILQARAAEIASIT---GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREY----PGLE 134 (321)
T ss_pred HHHHHHHHHHHHHHhh---CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhC----CCCe
Confidence 3444444455554444 478999999998864322 2 222222578899999999887766654321 1123
Q ss_pred eeeeeeccccc--cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 368 VSPLVCNVRQL--CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 368 i~~~~~Da~~l--~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+.-+.+|...- .++...--+++. -|..+|.-. ..-...||.++...|+|| -.+.+
T Consensus 135 v~~l~~~~~~~La~~~~~~~Rl~~f---lGStlGN~t--p~e~~~Fl~~l~~a~~pG-d~~Ll 191 (321)
T COG4301 135 VNALCGDYELALAELPRGGRRLFVF---LGSTLGNLT--PGECAVFLTQLRGALRPG-DYFLL 191 (321)
T ss_pred EeehhhhHHHHHhcccCCCeEEEEE---ecccccCCC--hHHHHHHHHHHHhcCCCc-ceEEE
Confidence 34455564321 111111112221 133333321 222446888999999997 54433
No 362
>COG1258 Predicted pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
Probab=47.47 E-value=29 Score=36.65 Aligned_cols=40 Identities=25% Similarity=0.190 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCEEEEEEEecCcceec
Q psy19 235 MESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVG 274 (494)
Q Consensus 235 ~~~~~~v~~aI~d~~~~~vdl~~pdi~i~v~l~~~~~~l~ 274 (494)
.++.|.+|..+..+.|..+|..+||++|.+.+....+.+-
T Consensus 122 ~E~nREvGK~~~~~~G~~~d~~~Pdi~i~vd~~~~~v~vq 161 (398)
T COG1258 122 HEFNREVGKRLASKTGKEPDFDNPDIVIVVDLETLKVEVQ 161 (398)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCCcEEEEE
Confidence 4577788888888888899999999999999966555543
No 363
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=47.38 E-value=57 Score=35.84 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=26.3
Q ss_pred CCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 381 KPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
.+.+||+|=+|-=|.... . ......++-++-|+|||+ |.++|
T Consensus 424 YPRTYDLlHA~~lfs~~~-~----rC~~~~illEmDRILRP~-G~~ii 465 (506)
T PF03141_consen 424 YPRTYDLLHADGLFSLYK-D----RCEMEDILLEMDRILRPG-GWVII 465 (506)
T ss_pred CCcchhheehhhhhhhhc-c----cccHHHHHHHhHhhcCCC-ceEEE
Confidence 347899987764433211 1 112345667899999999 87544
No 364
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=47.34 E-value=1.6e+02 Score=29.76 Aligned_cols=48 Identities=10% Similarity=0.096 Sum_probs=34.0
Q ss_pred HhCCCCCCEEEEEcC--CcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHH
Q psy19 306 LASPIPGDVFLDPMC--GGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN 354 (494)
Q Consensus 306 la~~~~g~~VLDP~C--GSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~N 354 (494)
.++.++|++||=-++ |.|.+++..|+.. ++.+++++.+++-.+.++..
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~ 195 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNK 195 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHh
Confidence 456788998887765 4556666666543 67899998888877776653
No 365
>KOG1201|consensus
Probab=46.89 E-value=63 Score=33.17 Aligned_cols=73 Identities=21% Similarity=0.229 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCcC---hHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc--------
Q psy19 311 PGDVFLDPMCGGG---TIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-------- 379 (494)
Q Consensus 311 ~g~~VLDP~CGSG---tilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-------- 379 (494)
.|+.||=-|.|+| .++.|.|.+ ++.+...|++.+......+.++..| .+....+|..+..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r--g~~~vl~Din~~~~~etv~~~~~~g-------~~~~y~cdis~~eei~~~a~~ 107 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR--GAKLVLWDINKQGNEETVKEIRKIG-------EAKAYTCDISDREEIYRLAKK 107 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh--CCeEEEEeccccchHHHHHHHHhcC-------ceeEEEecCCCHHHHHHHHHH
Confidence 5788999999988 456777777 6788899999999988888888654 2456777776542
Q ss_pred --CCCCCeeEEEEcC
Q psy19 380 --FKPACVDGIVTDL 392 (494)
Q Consensus 380 --~~~~~~D~IVtNP 392 (494)
-.-+.+|++|.|-
T Consensus 108 Vk~e~G~V~ILVNNA 122 (300)
T KOG1201|consen 108 VKKEVGDVDILVNNA 122 (300)
T ss_pred HHHhcCCceEEEecc
Confidence 1136889999984
No 366
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=45.60 E-value=68 Score=30.80 Aligned_cols=105 Identities=11% Similarity=0.077 Sum_probs=60.1
Q ss_pred cCC-cChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc----C------CC-CC
Q psy19 319 MCG-GGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC----F------KP-AC 384 (494)
Q Consensus 319 ~CG-SGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~----~------~~-~~ 384 (494)
|+| |+.|+...|..+ .++.|+..+.+++.++.+...+.... + ..++..|+.+.. + .. +.
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~---~----~~~~~~D~~~~~~v~~~~~~~~~~~~g~ 73 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEY---G----AEVIQCDLSDEESVEALFDEAVERFGGR 73 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHT---T----SEEEESCTTSHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHc---C----CceEeecCcchHHHHHHHHHHHhhcCCC
Confidence 344 455655555432 37899999999998766665555321 1 135777775431 0 12 68
Q ss_pred eeEEEEcCCCccc---cCCc-----cchHHH-------HHHHHHHHhhcccCCCcEEEEEec
Q psy19 385 VDGIVTDLPFGKR---VGSK-----SNNFLL-------YRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 385 ~D~IVtNPPYG~r---~~~~-----~~~~~l-------y~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
+|++|.|..+... ...- ++.... +-.+.+.+...++++ |.++++++
T Consensus 74 iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gsii~iss 134 (241)
T PF13561_consen 74 IDILVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKG-GSIINISS 134 (241)
T ss_dssp ESEEEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHE-EEEEEEEE
T ss_pred eEEEEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCcccccc
Confidence 9999998755433 1110 111111 113455666678888 88888755
No 367
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=45.51 E-value=1.4e+02 Score=30.75 Aligned_cols=100 Identities=14% Similarity=0.111 Sum_probs=56.2
Q ss_pred hCCCCCCEEEEEcC--CcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccc--cCCC
Q psy19 307 ASPIPGDVFLDPMC--GGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL--CFKP 382 (494)
Q Consensus 307 a~~~~g~~VLDP~C--GSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l--~~~~ 382 (494)
.+.++|++||=.++ |.|++++..|+.. +..++++--+++-.+.++. .|. ...+++...|+.+. .+-.
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~-G~~~v~~~~s~~k~~~~~~----lGA----d~vi~y~~~~~~~~v~~~t~ 208 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKAL-GATVVAVVSSSEKLELLKE----LGA----DHVINYREEDFVEQVRELTG 208 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHc-CCcEEEEecCHHHHHHHHh----cCC----CEEEcCCcccHHHHHHHHcC
Confidence 45678999888874 5668888888765 3356666665554443333 221 11233334443322 1112
Q ss_pred -CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 383 -ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 383 -~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
..+|+|+- ..+. ..+....+.|+++ |+++.+..
T Consensus 209 g~gvDvv~D------~vG~---------~~~~~~l~~l~~~-G~lv~ig~ 242 (326)
T COG0604 209 GKGVDVVLD------TVGG---------DTFAASLAALAPG-GRLVSIGA 242 (326)
T ss_pred CCCceEEEE------CCCH---------HHHHHHHHHhccC-CEEEEEec
Confidence 36898876 2222 1222467788998 98888644
No 368
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=45.40 E-value=2.6e+02 Score=26.82 Aligned_cols=77 Identities=10% Similarity=0.038 Sum_probs=49.6
Q ss_pred CCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-----C----
Q psy19 312 GDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-----F---- 380 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-----~---- 380 (494)
+.++|=.| |+|.++.+.+..+ .+..|++.+.++..++.....+...+ ..+.++.+|+.+.. +
T Consensus 10 ~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~------~~~~~~~~D~~~~~~~~~~~~~~~ 82 (255)
T PRK07523 10 GRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG------LSAHALAFDVTDHDAVRAAIDAFE 82 (255)
T ss_pred CCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC------ceEEEEEccCCCHHHHHHHHHHHH
Confidence 45677666 5777777766542 36789999999887776666665332 12456777776531 0
Q ss_pred -CCCCeeEEEEcCCCc
Q psy19 381 -KPACVDGIVTDLPFG 395 (494)
Q Consensus 381 -~~~~~D~IVtNPPYG 395 (494)
.-+.+|+||.|.-+.
T Consensus 83 ~~~~~~d~li~~ag~~ 98 (255)
T PRK07523 83 AEIGPIDILVNNAGMQ 98 (255)
T ss_pred HhcCCCCEEEECCCCC
Confidence 014689999987543
No 369
>KOG2920|consensus
Probab=45.02 E-value=16 Score=37.19 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHH
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~ 349 (494)
.+.+|||.|||+|--.|.+.+... ..+...|.+...++
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVLR 153 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc-ceeeeEecchhhee
Confidence 678999999999999999887632 67888888888773
No 370
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=44.26 E-value=37 Score=31.71 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=24.6
Q ss_pred eeEEEEcCCCccccCCcc----------chHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 385 VDGIVTDLPFGKRVGSKS----------NNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 385 ~D~IVtNPPYG~r~~~~~----------~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
||+|++||||-.+..... ...++..- -+.+++.++ +.+++=+.+
T Consensus 1 fdvI~~DPPW~~~~~~~~~~~~~~Y~tm~~~~i~~L---pv~~l~~~~-~~lflWvTn 54 (176)
T PF05063_consen 1 FDVIYADPPWPNKSASRKGGAEAHYPTMSLDEIKSL---PVPQLAAPG-ALLFLWVTN 54 (176)
T ss_pred CCEEEEeCCCCCcCcccccccccCCCccCHHHHHhC---CHHHhCCCC-cEEEEEecc
Confidence 799999999854432111 11222111 255667777 777774443
No 371
>PRK06940 short chain dehydrogenase; Provisional
Probab=42.78 E-value=1.5e+02 Score=29.24 Aligned_cols=73 Identities=16% Similarity=0.077 Sum_probs=44.5
Q ss_pred EEEEEcCCcChHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-----C----CCC
Q psy19 314 VFLDPMCGGGTIPVECSLSY-PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-----F----KPA 383 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~-~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-----~----~~~ 383 (494)
++|=-| +|.|+.++|..+ .+..|+..|.++..++.+...+...+ ..+.++.+|+.+.. + ..+
T Consensus 4 ~~lItG--a~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dv~d~~~i~~~~~~~~~~g 75 (275)
T PRK06940 4 VVVVIG--AGGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG------FDVSTQEVDVSSRESVKALAATAQTLG 75 (275)
T ss_pred EEEEEC--CChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEEeecCCHHHHHHHHHHHHhcC
Confidence 344444 356877766543 36789999998877665555554322 13456777776531 0 114
Q ss_pred CeeEEEEcCCC
Q psy19 384 CVDGIVTDLPF 394 (494)
Q Consensus 384 ~~D~IVtNPPY 394 (494)
.+|++|.|.-+
T Consensus 76 ~id~li~nAG~ 86 (275)
T PRK06940 76 PVTGLVHTAGV 86 (275)
T ss_pred CCCEEEECCCc
Confidence 68999999754
No 372
>PRK07576 short chain dehydrogenase; Provisional
Probab=42.73 E-value=3.1e+02 Score=26.58 Aligned_cols=76 Identities=12% Similarity=0.104 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C-------
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F------- 380 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~------- 380 (494)
.+.++|=.| |+|.++.+.+..+ .++.|++++.++..+......+...+ ..+.++..|+.+.. .
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~~~~i~~~~~~~ 80 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG------PEGLGVSADVRDYAAVEAAFAQI 80 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC------CceEEEECCCCCHHHHHHHHHHH
Confidence 355666665 5777776655432 36789999999887666555554322 12356667775431 0
Q ss_pred --CCCCeeEEEEcCC
Q psy19 381 --KPACVDGIVTDLP 393 (494)
Q Consensus 381 --~~~~~D~IVtNPP 393 (494)
..+.+|++|.|.-
T Consensus 81 ~~~~~~iD~vi~~ag 95 (264)
T PRK07576 81 ADEFGPIDVLVSGAA 95 (264)
T ss_pred HHHcCCCCEEEECCC
Confidence 0136899999873
No 373
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=41.88 E-value=1.9e+02 Score=29.02 Aligned_cols=86 Identities=10% Similarity=-0.069 Sum_probs=46.2
Q ss_pred CCCEEEEEcCC-cChHHHHHHhcCCCCe-EEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCCeeEE
Q psy19 311 PGDVFLDPMCG-GGTIPVECSLSYPHTF-FVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGI 388 (494)
Q Consensus 311 ~g~~VLDP~CG-SGtilIEAA~~~~~~~-v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~~D~I 388 (494)
++++++=.||| .|.+++.+|+.+ ++. ++++|.++..++.|... .+ + |..+. ....+|+|
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~-G~~~v~~~~~~~~rl~~a~~~----~~----------i--~~~~~--~~~g~Dvv 204 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAA-GGSPPAVWETNPRRRDGATGY----EV----------L--DPEKD--PRRDYRAI 204 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHhhhhc----cc----------c--Chhhc--cCCCCCEE
Confidence 46667766553 233334444443 454 67789988776665531 10 0 11000 12357877
Q ss_pred EEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 389 VTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 389 VtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+-. .+.. ..+..+.+.|+++ |+++++.
T Consensus 205 id~------~G~~--------~~~~~~~~~l~~~-G~iv~~G 231 (308)
T TIGR01202 205 YDA------SGDP--------SLIDTLVRRLAKG-GEIVLAG 231 (308)
T ss_pred EEC------CCCH--------HHHHHHHHhhhcC-cEEEEEe
Confidence 652 3321 2233577789999 9988764
No 374
>PRK05854 short chain dehydrogenase; Provisional
Probab=40.31 E-value=3.9e+02 Score=26.92 Aligned_cols=78 Identities=8% Similarity=-0.013 Sum_probs=49.2
Q ss_pred CCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc----C-----
Q psy19 312 GDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC----F----- 380 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~----~----- 380 (494)
+.+++=.|+ +|.|+.+.|... .+.+|+....+....+.+...+....- ...+.++..|+.+.. +
T Consensus 14 gk~~lITGa-s~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~----~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 14 GKRAVVTGA-SDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVP----DAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC----CCceEEEEecCCCHHHHHHHHHHHH
Confidence 456665555 566777666532 367899889988877776666653211 123567788876642 0
Q ss_pred -CCCCeeEEEEcCCC
Q psy19 381 -KPACVDGIVTDLPF 394 (494)
Q Consensus 381 -~~~~~D~IVtNPPY 394 (494)
..+.+|++|.|.-.
T Consensus 89 ~~~~~iD~li~nAG~ 103 (313)
T PRK05854 89 AEGRPIHLLINNAGV 103 (313)
T ss_pred HhCCCccEEEECCcc
Confidence 12468999998754
No 375
>KOG1098|consensus
Probab=40.19 E-value=28 Score=39.04 Aligned_cols=51 Identities=22% Similarity=0.248 Sum_probs=38.6
Q ss_pred chHHHHHHHHHHhC----CCCCCEEEEEcCCcChHHHHHHhcCC-CCeEEEEeCCH
Q psy19 295 LKPTIAYNMVRLAS----PIPGDVFLDPMCGGGTIPVECSLSYP-HTFFVCGDINE 345 (494)
Q Consensus 295 L~e~lAa~ll~la~----~~~g~~VLDP~CGSGtilIEAA~~~~-~~~v~G~Did~ 345 (494)
.+..-|.-|+++-. ..++..|||+||-.|+-+--|+...| +..|+|+|+-|
T Consensus 24 yrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 24 YRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred hhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 44555666776542 46788999999999999888776655 56789999876
No 376
>PRK08267 short chain dehydrogenase; Provisional
Probab=38.51 E-value=2e+02 Score=27.72 Aligned_cols=73 Identities=12% Similarity=-0.031 Sum_probs=44.8
Q ss_pred EEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-----CC-----
Q psy19 314 VFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-----FK----- 381 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-----~~----- 381 (494)
++|=.|+ +|.++.+.+..+ .+..|+..+.++..++.....+. + ..+.++++|+.+.. +.
T Consensus 3 ~vlItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~------~~~~~~~~D~~~~~~v~~~~~~~~~~ 73 (260)
T PRK08267 3 SIFITGA-ASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A------GNAWTGALDVTDRAAWDAALADFAAA 73 (260)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C------CceEEEEecCCCHHHHHHHHHHHHHH
Confidence 3555554 466666655432 36789999999887666554433 1 23467778876531 00
Q ss_pred -CCCeeEEEEcCCCc
Q psy19 382 -PACVDGIVTDLPFG 395 (494)
Q Consensus 382 -~~~~D~IVtNPPYG 395 (494)
.+.+|+||.|.-+.
T Consensus 74 ~~~~id~vi~~ag~~ 88 (260)
T PRK08267 74 TGGRLDVLFNNAGIL 88 (260)
T ss_pred cCCCCCEEEECCCCC
Confidence 24689999987653
No 377
>PRK14554 putative pseudouridylate synthase; Provisional
Probab=38.18 E-value=48 Score=35.72 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCEEEEEEEecCcceecccc---ccc------ccccccccc-c----ccccchHHHH
Q psy19 235 MESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPV---TQT------SLHRRNIVE-F----NITTLKPTIA 300 (494)
Q Consensus 235 ~~~~~~v~~aI~d~~~~~vdl~~pdi~i~v~l~~~~~~l~l~l---sg~------sL~~Rgy~~-~----~~a~L~e~lA 300 (494)
.++.|.+|..|.+.++..+|.++||+.|.+.+..+.+.+-..- .|. .+-+..|.. . .+.|+.+-++
T Consensus 148 ~e~nRevGk~l~~~~gk~~d~~~Pdv~i~~d~~~~~V~~~~~pi~i~GrY~Kl~R~ipQT~W~~~~g~~~~~~SVeelI~ 227 (422)
T PRK14554 148 SEINREVGKRLAARTGKEVDFENPDVVIVVDLETDKVELQVNPLFIYGRYRKLVRGIPQTRWPCRKCKKQYPESVEELIA 227 (422)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCcEEEEEEcCCCeEEEEECCEEEEEEEeeccCCCCCCccccCCCCCCCCCCHHHHHH
Confidence 4577889999999999999999999999999887766543221 121 111222311 1 2467777777
Q ss_pred HHHHHHhC
Q psy19 301 YNMVRLAS 308 (494)
Q Consensus 301 a~ll~la~ 308 (494)
..++...+
T Consensus 228 ~~i~~~f~ 235 (422)
T PRK14554 228 KPVIEAFG 235 (422)
T ss_pred HHHHHHhC
Confidence 77766654
No 378
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=38.04 E-value=2.2e+02 Score=29.41 Aligned_cols=100 Identities=18% Similarity=0.107 Sum_probs=54.4
Q ss_pred HHhCCCCCCEEEEEcCCcChHHHH---HHhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccc-c-
Q psy19 305 RLASPIPGDVFLDPMCGGGTIPVE---CSLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQ-L- 378 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGSGtilIE---AA~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~-l- 378 (494)
..+..+++++||=.++ |.++.. +|+. .++ .|+++|.++.-++.++. .|.. ..+.....|..+ +
T Consensus 185 ~~~~i~~g~~VlV~G~--G~vG~~a~~lak~-~G~~~Vi~~~~~~~r~~~a~~----~Ga~----~~i~~~~~~~~~~i~ 253 (371)
T cd08281 185 NTAGVRPGQSVAVVGL--GGVGLSALLGAVA-AGASQVVAVDLNEDKLALARE----LGAT----ATVNAGDPNAVEQVR 253 (371)
T ss_pred hccCCCCCCEEEEECC--CHHHHHHHHHHHH-cCCCcEEEEcCCHHHHHHHHH----cCCc----eEeCCCchhHHHHHH
Confidence 4456778888777665 455444 3433 356 69999999998887764 2321 011111112111 1
Q ss_pred cCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 379 CFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 379 ~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
....+.+|+|+- ..+.. ..+..+.+.|+++ |+++++.
T Consensus 254 ~~~~~g~d~vid------~~G~~--------~~~~~~~~~l~~~-G~iv~~G 290 (371)
T cd08281 254 ELTGGGVDYAFE------MAGSV--------PALETAYEITRRG-GTTVTAG 290 (371)
T ss_pred HHhCCCCCEEEE------CCCCh--------HHHHHHHHHHhcC-CEEEEEc
Confidence 111135788875 22221 1233466788998 9888763
No 379
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=37.95 E-value=2.5e+02 Score=28.54 Aligned_cols=101 Identities=17% Similarity=0.068 Sum_probs=54.0
Q ss_pred HHHhCCCCCCEEEEEcCC-cChHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecc----cc
Q psy19 304 VRLASPIPGDVFLDPMCG-GGTIPVECSLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV----RQ 377 (494)
Q Consensus 304 l~la~~~~g~~VLDP~CG-SGtilIEAA~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da----~~ 377 (494)
+..+..+++.+||=.++| .|.+++.+|+.. +. .++++|.++.....++. .|. ...+.....+. ..
T Consensus 159 ~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~----~g~----~~~v~~~~~~~~~~i~~ 229 (351)
T cd08285 159 AELANIKLGDTVAVFGIGPVGLMAVAGARLR-GAGRIIAVGSRPNRVELAKE----YGA----TDIVDYKNGDVVEQILK 229 (351)
T ss_pred HHccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCC----ceEecCCCCCHHHHHHH
Confidence 345566778887776543 233334444433 45 58899999887777664 232 11111111111 11
Q ss_pred ccCCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEE
Q psy19 378 LCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429 (494)
Q Consensus 378 l~~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvll 429 (494)
+ .....+|+|+- ..+.. ..+..+.+.|+++ |+++.+
T Consensus 230 ~-~~~~~~d~vld------~~g~~--------~~~~~~~~~l~~~-G~~v~~ 265 (351)
T cd08285 230 L-TGGKGVDAVII------AGGGQ--------DTFEQALKVLKPG-GTISNV 265 (351)
T ss_pred H-hCCCCCcEEEE------CCCCH--------HHHHHHHHHhhcC-CEEEEe
Confidence 1 11235888875 22221 2334677788998 988765
No 380
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=37.40 E-value=2.1e+02 Score=32.47 Aligned_cols=59 Identities=7% Similarity=-0.028 Sum_probs=39.4
Q ss_pred CCcChHHHHHHhc--CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C---CCCCeeEEEE
Q psy19 320 CGGGTIPVECSLS--YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F---KPACVDGIVT 390 (494)
Q Consensus 320 CGSGtilIEAA~~--~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~---~~~~~D~IVt 390 (494)
||.|.++...+.. -.+..++.+|.|++.++.+++ .|. .++.+|+.+.. + .-...+++|+
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g~--------~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 406 AGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----FGM--------KVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred EecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----cCC--------eEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 6777776666543 235679999999999988865 232 57889988763 1 1135666665
No 381
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=37.31 E-value=3.1e+02 Score=27.60 Aligned_cols=48 Identities=13% Similarity=0.020 Sum_probs=31.3
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHH---HhcCCCCe-EEEEeCCHHHHHHHHH
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVEC---SLSYPHTF-FVCGDINEKLVLKTQA 353 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEA---A~~~~~~~-v~G~Did~~al~~Ar~ 353 (494)
.+..+...+|++||=.++ |.++..+ |+. .++. +++++.++.-.+.+++
T Consensus 155 ~l~~~~~~~g~~vlV~G~--G~vG~~~~~~ak~-~G~~~vi~~~~~~~~~~~~~~ 206 (339)
T cd08239 155 ALRRVGVSGRDTVLVVGA--GPVGLGALMLARA-LGAEDVIGVDPSPERLELAKA 206 (339)
T ss_pred HHHhcCCCCCCEEEEECC--CHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHH
Confidence 344456677888877754 5555443 333 3566 9999999887776643
No 382
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=36.55 E-value=1.3e+02 Score=30.50 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCcC--hHHHH-HHhc-CC-CCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCC
Q psy19 310 IPGDVFLDPMCGGG--TIPVE-CSLS-YP-HTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPAC 384 (494)
Q Consensus 310 ~~g~~VLDP~CGSG--tilIE-AA~~-~~-~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~ 384 (494)
..+.+|+-.|+||- .-+=. ..++ +| ++.++-.|+++-. .+.-..+.+|...+..+ ..
T Consensus 60 P~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v-----------------SDa~~~~~~Dc~t~~~~-~k 121 (299)
T PF06460_consen 60 PHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV-----------------SDADQSIVGDCRTYMPP-DK 121 (299)
T ss_dssp -TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B------------------SSSEEEES-GGGEEES-S-
T ss_pred ccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc-----------------cccCCceeccccccCCC-Cc
Confidence 35789999999972 22222 2233 33 5677778887642 22224677898887654 68
Q ss_pred eeEEEEcCCCccccCCc----cchHHHHHHHHHHHhhcccCCCcEEEE-Eec
Q psy19 385 VDGIVTDLPFGKRVGSK----SNNFLLYRLFLIEIGKIVRPQIGRAIL-LTS 431 (494)
Q Consensus 385 ~D~IVtNPPYG~r~~~~----~~~~~ly~~fL~~l~rvLkpg~G~lvl-lt~ 431 (494)
+|+||+|+ |..+...- ..-..++.-+..-+..-|+-| |.+++ +|-
T Consensus 122 ~DlIiSDm-Yd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLG-GSvaiKiTE 171 (299)
T PF06460_consen 122 FDLIISDM-YDGRTKNCDGENNSKEGFFTYLCGFIKEKLALG-GSVAIKITE 171 (299)
T ss_dssp EEEEEE-----TTS-SS-S------THHHHHHHHHHHHEEEE-EEEEEEE-S
T ss_pred ccEEEEec-ccccccccccccCCccccHHHHHHHHHhhhhcC-ceEEEEeec
Confidence 99999997 64443221 112345555666677778888 88877 554
No 383
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=36.35 E-value=2.8e+02 Score=27.71 Aligned_cols=53 Identities=11% Similarity=-0.020 Sum_probs=30.0
Q ss_pred HHHHHHHhCCCCCCEEEE--EcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q psy19 300 AYNMVRLASPIPGDVFLD--PMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353 (494)
Q Consensus 300 Aa~ll~la~~~~g~~VLD--P~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~ 353 (494)
|+.++..+...++..++= ..-|.|.+++.+|+. .++.+++++.++...+.++.
T Consensus 132 a~~~~~~~~~~~~~vlv~~~g~g~vG~~a~q~a~~-~G~~vi~~~~~~~~~~~~~~ 186 (324)
T cd08291 132 ALGMLETAREEGAKAVVHTAAASALGRMLVRLCKA-DGIKVINIVRRKEQVDLLKK 186 (324)
T ss_pred HHHHHHhhccCCCcEEEEccCccHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHH
Confidence 334444444434444442 222344445555543 36789999999887777765
No 384
>PRK12939 short chain dehydrogenase; Provisional
Probab=36.02 E-value=3.2e+02 Score=25.74 Aligned_cols=75 Identities=11% Similarity=0.081 Sum_probs=47.4
Q ss_pred CCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-----CC---
Q psy19 312 GDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-----FK--- 381 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-----~~--- 381 (494)
+.++| +..|+|.++...+..+ .+..+++++.++..+......++..+ ..+.++.+|+.+.. +.
T Consensus 7 ~~~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (250)
T PRK12939 7 GKRAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG------GRAHAIAADLADPASVQRFFDAAA 79 (250)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHHH
Confidence 45666 4446778877776543 36788889998887766655554322 23567778876542 00
Q ss_pred --CCCeeEEEEcCC
Q psy19 382 --PACVDGIVTDLP 393 (494)
Q Consensus 382 --~~~~D~IVtNPP 393 (494)
-+.+|+||.+.-
T Consensus 80 ~~~~~id~vi~~ag 93 (250)
T PRK12939 80 AALGGLDGLVNNAG 93 (250)
T ss_pred HHcCCCCEEEECCC
Confidence 146899998753
No 385
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=35.74 E-value=1.1e+02 Score=31.22 Aligned_cols=47 Identities=21% Similarity=0.205 Sum_probs=33.6
Q ss_pred HhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q psy19 306 LASPIPGDVFLDPMCGG-GTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353 (494)
Q Consensus 306 la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~~v~G~Did~~al~~Ar~ 353 (494)
.+.+++|.+|+=.+||+ |.+++.+|+.. ++.++++|.++.-++.++.
T Consensus 161 ~~~~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 161 QAGLKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH
Confidence 35677889999888743 44445555544 5689999999988877754
No 386
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=35.15 E-value=2.6e+02 Score=31.01 Aligned_cols=60 Identities=10% Similarity=0.076 Sum_probs=41.5
Q ss_pred cCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc----CCCCCeeEEEE
Q psy19 319 MCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC----FKPACVDGIVT 390 (494)
Q Consensus 319 ~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~----~~~~~~D~IVt 390 (494)
=||.|.++...+... .+..++.+|.|++.++.+++ .+ ...+.+|+.+.. ..-+..|.++.
T Consensus 422 I~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~g--------~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 422 LVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----RG--------IRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred EECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----CC--------CeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 378888887777652 35689999999998888863 12 257888887752 11246776665
No 387
>PRK07102 short chain dehydrogenase; Provisional
Probab=34.84 E-value=3.3e+02 Score=25.79 Aligned_cols=75 Identities=12% Similarity=0.101 Sum_probs=46.5
Q ss_pred EEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C----C--CCC
Q psy19 314 VFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F----K--PAC 384 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~----~--~~~ 384 (494)
+++=.| |+|.++...+..+ .+..|++++.++...+....++...+ ..++.++.+|+.+.. . . ...
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 76 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-----AVAVSTHELDILDTASHAAFLDSLPAL 76 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-----CCeEEEEecCCCChHHHHHHHHHHhhc
Confidence 455455 5677776655442 36789999999887665555554321 124577888877642 1 0 124
Q ss_pred eeEEEEcCCC
Q psy19 385 VDGIVTDLPF 394 (494)
Q Consensus 385 ~D~IVtNPPY 394 (494)
+|++|.|..+
T Consensus 77 ~d~vv~~ag~ 86 (243)
T PRK07102 77 PDIVLIAVGT 86 (243)
T ss_pred CCEEEECCcC
Confidence 7999988754
No 388
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=34.04 E-value=45 Score=29.16 Aligned_cols=24 Identities=29% Similarity=0.384 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhcccCCCcEEEEEec
Q psy19 407 LYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 407 ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
-...|++.+.+.|+|| |.+++-..
T Consensus 22 Gl~~~f~~~~~~L~pG-G~lilEpQ 45 (110)
T PF06859_consen 22 GLKRFFRRIYSLLRPG-GILILEPQ 45 (110)
T ss_dssp HHHHHHHHHHHHEEEE-EEEEEE--
T ss_pred HHHHHHHHHHHhhCCC-CEEEEeCC
Confidence 3556888899999999 98877543
No 389
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=33.13 E-value=26 Score=35.39 Aligned_cols=47 Identities=19% Similarity=0.313 Sum_probs=30.4
Q ss_pred chHHHHHHHHHHhC-CCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeC
Q psy19 295 LKPTIAYNMVRLAS-PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDI 343 (494)
Q Consensus 295 L~e~lAa~ll~la~-~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Di 343 (494)
|-+-+...+...+. ...+..++|+|.|||.++-.+-.+ +-.|++-|+
T Consensus 10 LlsFi~~~i~~~~k~~~s~k~f~DiFaGtGVV~~~fkk~--~n~iiaNDl 57 (330)
T COG3392 10 LLSFIKENIHEVKKEDLSGKIFCDIFAGTGVVGRFFKKA--GNKIIANDL 57 (330)
T ss_pred HHHHHHHHHHHHhhcccCCCeeeeeccCccHHHHHHHHh--cchhhhchH
Confidence 33334444444443 245679999999999999887766 445555554
No 390
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.65 E-value=2.3e+02 Score=26.74 Aligned_cols=75 Identities=15% Similarity=0.071 Sum_probs=47.1
Q ss_pred EEEEEcCCcChHHHHHHhcC--CCCeEEEE-eCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C----C----
Q psy19 314 VFLDPMCGGGTIPVECSLSY--PHTFFVCG-DINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F----K---- 381 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~--~~~~v~G~-Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~----~---- 381 (494)
++|=.| |+|.++.+.+..+ .+..++.. +.++..+......+...+ ..+.+..+|+.+.. . .
T Consensus 7 ~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (247)
T PRK05565 7 VAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG------GDAIAVKADVSSEEDVENLVEQIVE 79 (247)
T ss_pred EEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC------CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 454444 5777877766542 35678888 888877766666555321 23567778876542 1 0
Q ss_pred -CCCeeEEEEcCCCc
Q psy19 382 -PACVDGIVTDLPFG 395 (494)
Q Consensus 382 -~~~~D~IVtNPPYG 395 (494)
-+.+|+||.++.+.
T Consensus 80 ~~~~id~vi~~ag~~ 94 (247)
T PRK05565 80 KFGKIDILVNNAGIS 94 (247)
T ss_pred HhCCCCEEEECCCcC
Confidence 13689999998764
No 391
>KOG3350|consensus
Probab=31.77 E-value=60 Score=31.00 Aligned_cols=41 Identities=32% Similarity=0.294 Sum_probs=25.1
Q ss_pred CCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEecC
Q psy19 383 ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 383 ~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
+.||+||.||||-..-- ..+--..+.+++++. -++.+.|+.
T Consensus 134 ~~fdiivaDPPfL~~eC--------l~Kts~tik~L~r~~-~kvilCtGe 174 (217)
T KOG3350|consen 134 AHFDIIVADPPFLSEEC--------LAKTSETIKRLQRNQ-KKVILCTGE 174 (217)
T ss_pred hcccEEEeCCccccchh--------hhhhHHHHHHHhcCC-ceEEEechh
Confidence 57999999999953210 111122355667776 676666665
No 392
>PRK06914 short chain dehydrogenase; Provisional
Probab=31.70 E-value=3.4e+02 Score=26.35 Aligned_cols=77 Identities=6% Similarity=-0.001 Sum_probs=45.1
Q ss_pred CEEEEEcCCcChHHHHHHhc--CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C--------C
Q psy19 313 DVFLDPMCGGGTIPVECSLS--YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F--------K 381 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~--~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~--------~ 381 (494)
.++|=.| |+|.++...+.. -.+..|++++.++..++.....+...+. ...+.++.+|+.+.. . .
T Consensus 4 k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~d~~~~~~~~~~~~~ 78 (280)
T PRK06914 4 KIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNL----QQNIKVQQLDVTDQNSIHNFQLVLKE 78 (280)
T ss_pred CEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC----CCceeEEecCCCCHHHHHHHHHHHHh
Confidence 3455555 455555554432 2367899999888776665544443321 234567778876632 0 0
Q ss_pred CCCeeEEEEcCCC
Q psy19 382 PACVDGIVTDLPF 394 (494)
Q Consensus 382 ~~~~D~IVtNPPY 394 (494)
-+.+|+||.|.-+
T Consensus 79 ~~~id~vv~~ag~ 91 (280)
T PRK06914 79 IGRIDLLVNNAGY 91 (280)
T ss_pred cCCeeEEEECCcc
Confidence 1468999998753
No 393
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.22 E-value=5e+02 Score=25.18 Aligned_cols=78 Identities=13% Similarity=-0.048 Sum_probs=42.5
Q ss_pred CCCEEEEEcCCcC-hHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-----C--
Q psy19 311 PGDVFLDPMCGGG-TIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-----F-- 380 (494)
Q Consensus 311 ~g~~VLDP~CGSG-tilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-----~-- 380 (494)
.+.++|=.|+++| .|+.+.|..+ .++.|+..+.+...-+.++......+. ..+++.|+.+.. +
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~-------~~~~~~Dv~~~~~v~~~~~~ 79 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGC-------NFVSELDVTNPKSISNLFDD 79 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCC-------ceEEEccCCCHHHHHHHHHH
Confidence 3456777777664 4665555432 367888777775433333332222121 124566765531 0
Q ss_pred ---CCCCeeEEEEcCCCc
Q psy19 381 ---KPACVDGIVTDLPFG 395 (494)
Q Consensus 381 ---~~~~~D~IVtNPPYG 395 (494)
.-+.+|++|.|.-+.
T Consensus 80 ~~~~~g~iDilVnnag~~ 97 (260)
T PRK06603 80 IKEKWGSFDFLLHGMAFA 97 (260)
T ss_pred HHHHcCCccEEEEccccC
Confidence 125799999998653
No 394
>PRK05650 short chain dehydrogenase; Provisional
Probab=31.08 E-value=3.1e+02 Score=26.58 Aligned_cols=74 Identities=16% Similarity=0.081 Sum_probs=46.0
Q ss_pred EEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C---------CC
Q psy19 315 FLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F---------KP 382 (494)
Q Consensus 315 VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~---------~~ 382 (494)
+|=.| |+|.|+.+.+..+ .+..|+.++.+...++.+...+...+ ..+.++.+|+.+.. . ..
T Consensus 3 vlVtG-asggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~~~~~~~~~~i~~~~ 75 (270)
T PRK05650 3 VMITG-AASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG------GDGFYQRCDVRDYSQLTALAQACEEKW 75 (270)
T ss_pred EEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 44444 4666766665442 36788999999887777666665432 23456777876541 0 01
Q ss_pred CCeeEEEEcCCCc
Q psy19 383 ACVDGIVTDLPFG 395 (494)
Q Consensus 383 ~~~D~IVtNPPYG 395 (494)
+.+|++|.|....
T Consensus 76 ~~id~lI~~ag~~ 88 (270)
T PRK05650 76 GGIDVIVNNAGVA 88 (270)
T ss_pred CCCCEEEECCCCC
Confidence 4689999987543
No 395
>PRK07109 short chain dehydrogenase; Provisional
Probab=30.68 E-value=3.5e+02 Score=27.71 Aligned_cols=76 Identities=12% Similarity=0.051 Sum_probs=49.2
Q ss_pred CCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C--------
Q psy19 312 GDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F-------- 380 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~-------- 380 (494)
+.++|=.| |+|.|+.+.+..+ .+..|+.++.++..++.....+...+. .+.++.+|+.+.. .
T Consensus 8 ~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~------~~~~v~~Dv~d~~~v~~~~~~~~ 80 (334)
T PRK07109 8 RQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG------EALAVVADVADAEAVQAAADRAE 80 (334)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC------cEEEEEecCCCHHHHHHHHHHHH
Confidence 34555555 5666776665432 367899999999888877777765432 3456777776541 0
Q ss_pred -CCCCeeEEEEcCCC
Q psy19 381 -KPACVDGIVTDLPF 394 (494)
Q Consensus 381 -~~~~~D~IVtNPPY 394 (494)
.-+.+|++|.|.-+
T Consensus 81 ~~~g~iD~lInnAg~ 95 (334)
T PRK07109 81 EELGPIDTWVNNAMV 95 (334)
T ss_pred HHCCCCCEEEECCCc
Confidence 01478999998754
No 396
>PRK07890 short chain dehydrogenase; Provisional
Probab=30.58 E-value=4.8e+02 Score=24.79 Aligned_cols=75 Identities=11% Similarity=0.027 Sum_probs=45.7
Q ss_pred CCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C--------
Q psy19 312 GDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F-------- 380 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~-------- 380 (494)
+.++|=.| |+|.|+...+..+ .+..|++++.++..++.....+...+ .++.++..|+.+.. .
T Consensus 5 ~k~vlItG-a~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~ 77 (258)
T PRK07890 5 GKVVVVSG-VGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG------RRALAVPTDITDEDQCANLVALAL 77 (258)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC------CceEEEecCCCCHHHHHHHHHHHH
Confidence 44566444 5667776655432 36789999999877666655554322 23456777775431 0
Q ss_pred -CCCCeeEEEEcCC
Q psy19 381 -KPACVDGIVTDLP 393 (494)
Q Consensus 381 -~~~~~D~IVtNPP 393 (494)
.-+.+|+||.|.-
T Consensus 78 ~~~g~~d~vi~~ag 91 (258)
T PRK07890 78 ERFGRVDALVNNAF 91 (258)
T ss_pred HHcCCccEEEECCc
Confidence 0146899999874
No 397
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=30.47 E-value=3.7e+02 Score=23.54 Aligned_cols=71 Identities=6% Similarity=0.017 Sum_probs=44.6
Q ss_pred CCcChHHHHHHhcC--C-CCeEEEEeCC--HHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C---------CCCC
Q psy19 320 CGGGTIPVECSLSY--P-HTFFVCGDIN--EKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F---------KPAC 384 (494)
Q Consensus 320 CGSGtilIEAA~~~--~-~~~v~G~Did--~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~---------~~~~ 384 (494)
-|+|.++.+.+..+ . +..++.+..+ ...++.....+...+ ..+.+.+.|+.+.. . ..+.
T Consensus 7 Ga~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 7 GASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG------AKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp TTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT------SEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc------ccccccccccccccccccccccccccccc
Confidence 35677877776543 1 3467777777 555665555565332 34678888876541 0 1258
Q ss_pred eeEEEEcCCCcc
Q psy19 385 VDGIVTDLPFGK 396 (494)
Q Consensus 385 ~D~IVtNPPYG~ 396 (494)
+|++|.|.....
T Consensus 81 ld~li~~ag~~~ 92 (167)
T PF00106_consen 81 LDILINNAGIFS 92 (167)
T ss_dssp ESEEEEECSCTT
T ss_pred cccccccccccc
Confidence 999999987644
No 398
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=30.33 E-value=25 Score=35.70 Aligned_cols=29 Identities=10% Similarity=0.035 Sum_probs=21.0
Q ss_pred eeeeeeccccccCCCCCe-eEEEEcCCCcc
Q psy19 368 VSPLVCNVRQLCFKPACV-DGIVTDLPFGK 396 (494)
Q Consensus 368 i~~~~~Da~~l~~~~~~~-D~IVtNPPYG~ 396 (494)
+.+.++|+.++-....+- |+|.+||||-.
T Consensus 157 ~~i~~~df~~v~~~a~~~~dfvY~DPPY~~ 186 (274)
T COG0338 157 ATIENGDFEEVLADADSGDDFVYCDPPYLP 186 (274)
T ss_pred CeEEcCCHHHHHhhccCCCcEEEeCCCCCc
Confidence 468888988874322345 79999999953
No 399
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=30.08 E-value=3.5e+02 Score=26.99 Aligned_cols=102 Identities=10% Similarity=-0.093 Sum_probs=52.1
Q ss_pred CEEEEEcCCcChHHHHHHhc-----CCCCeEEEEeCC--------------------------HHHHHHHHHHHHhccCC
Q psy19 313 DVFLDPMCGGGTIPVECSLS-----YPHTFFVCGDIN--------------------------EKLVLKTQANVLHNSGN 361 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~-----~~~~~v~G~Did--------------------------~~al~~Ar~Nl~~~g~~ 361 (494)
.-|++.||--|+.++.++.. .++.++++.|.- ...++..+.|+...|+
T Consensus 76 GdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl- 154 (248)
T PF05711_consen 76 GDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL- 154 (248)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT-
T ss_pred eEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC-
Confidence 35999999999765543221 234567777631 1134555566655543
Q ss_pred CCcccceeeeeeccccc-c-CCCCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 362 LNRELKVSPLVCNVRQL-C-FKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 362 ~~~~~~i~~~~~Da~~l-~-~~~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
...++.++.+.+.+- | .+...+-++-.| .++-+-....|+.+...|.|| |.+++
T Consensus 155 --~~~~v~~vkG~F~dTLp~~p~~~IAll~lD----------~DlYesT~~aLe~lyprl~~G-GiIi~ 210 (248)
T PF05711_consen 155 --LDDNVRFVKGWFPDTLPDAPIERIALLHLD----------CDLYESTKDALEFLYPRLSPG-GIIIF 210 (248)
T ss_dssp --SSTTEEEEES-HHHHCCC-TT--EEEEEE-------------SHHHHHHHHHHHGGGEEEE-EEEEE
T ss_pred --CcccEEEECCcchhhhccCCCccEEEEEEe----------ccchHHHHHHHHHHHhhcCCC-eEEEE
Confidence 245788999988653 2 112233333332 133333445667777788898 86554
No 400
>PRK07832 short chain dehydrogenase; Provisional
Probab=29.92 E-value=4.8e+02 Score=25.30 Aligned_cols=70 Identities=10% Similarity=0.014 Sum_probs=41.3
Q ss_pred CcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC----------CCCCeeEE
Q psy19 321 GGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF----------KPACVDGI 388 (494)
Q Consensus 321 GSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~----------~~~~~D~I 388 (494)
|+|.++.+++... .+..++.++.++..++.+...+...+. ..+.+..+|+.+... ..+.+|.+
T Consensus 8 as~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l 82 (272)
T PRK07832 8 AASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGG-----TVPEHRALDISDYDAVAAFAADIHAAHGSMDVV 82 (272)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEeeCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 4666766655432 367888889888877766666553321 112345667654310 11468999
Q ss_pred EEcCCCc
Q psy19 389 VTDLPFG 395 (494)
Q Consensus 389 VtNPPYG 395 (494)
|.|.-+.
T Consensus 83 v~~ag~~ 89 (272)
T PRK07832 83 MNIAGIS 89 (272)
T ss_pred EECCCCC
Confidence 9987543
No 401
>PRK07806 short chain dehydrogenase; Provisional
Probab=29.58 E-value=4.8e+02 Score=24.66 Aligned_cols=112 Identities=14% Similarity=0.050 Sum_probs=56.0
Q ss_pred CCEEEEEcCCcChHHHHHHhc--CCCCeEEEEeCCH-HHHHHHHHHHHhccCCCCcccceeeeeecccccc-C----C--
Q psy19 312 GDVFLDPMCGGGTIPVECSLS--YPHTFFVCGDINE-KLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F----K-- 381 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~--~~~~~v~G~Did~-~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~----~-- 381 (494)
+.++|-.|+ +|.++...+.. -.+..|++.+.+. ...+.....+...+ ..+.++.+|+.+.. . .
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~~~~~~~~~~~ 78 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG------GRASAVGADLTDEESVAALMDTA 78 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC------CceEEEEcCCCCHHHHHHHHHHH
Confidence 456777665 45565555433 2356788877654 23333333333221 12456777776541 0 0
Q ss_pred ---CCCeeEEEEcCCCccccCC-cc----chHHHHHHHHHHHhhcccCCCcEEEEEec
Q psy19 382 ---PACVDGIVTDLPFGKRVGS-KS----NNFLLYRLFLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 382 ---~~~~D~IVtNPPYG~r~~~-~~----~~~~ly~~fL~~l~rvLkpg~G~lvllt~ 431 (494)
-+.+|+||.|..+...... .. .+..-...+++.+...++.+ |+++++++
T Consensus 79 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~-~~iv~isS 135 (248)
T PRK07806 79 REEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAG-SRVVFVTS 135 (248)
T ss_pred HHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCC-ceEEEEeC
Confidence 1368999988754321100 00 01111123444555555556 78887765
No 402
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=29.55 E-value=5e+02 Score=24.74 Aligned_cols=78 Identities=14% Similarity=-0.008 Sum_probs=45.5
Q ss_pred CEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-----C-----
Q psy19 313 DVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-----F----- 380 (494)
Q Consensus 313 ~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-----~----- 380 (494)
.++|=.| |+|.++.+.+..+ .+..++.+|.++...+.....+.... + ...+.++.+|+.+.. +
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~---~-~~~~~~~~~D~~~~~~i~~~~~~~~~ 77 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEY---G-EGMAYGFGADATSEQSVLALSRGVDE 77 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc---C-CceeEEEEccCCCHHHHHHHHHHHHH
Confidence 3556555 5666766555432 36789999998876665554443211 0 123567777776531 0
Q ss_pred CCCCeeEEEEcCCCc
Q psy19 381 KPACVDGIVTDLPFG 395 (494)
Q Consensus 381 ~~~~~D~IVtNPPYG 395 (494)
.-+.+|.||.|.-+.
T Consensus 78 ~~~~id~vv~~ag~~ 92 (259)
T PRK12384 78 IFGRVDLLVYNAGIA 92 (259)
T ss_pred HcCCCCEEEECCCcC
Confidence 014689999987543
No 403
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=29.33 E-value=5.1e+02 Score=24.75 Aligned_cols=76 Identities=12% Similarity=0.069 Sum_probs=49.3
Q ss_pred CCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C--------
Q psy19 312 GDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F-------- 380 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~-------- 380 (494)
+.++|=.| |+|.++...+..+ .+..|+.++.+...++.....+...+ .++.++.+|+.+.. .
T Consensus 12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~------~~~~~~~~Dl~d~~~i~~~~~~~~ 84 (259)
T PRK08213 12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG------IDALWIAADVADEADIERLAEETL 84 (259)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEEccCCCHHHHHHHHHHHH
Confidence 45677666 5777777766542 36789999998877776665555332 23456778877541 1
Q ss_pred -CCCCeeEEEEcCCC
Q psy19 381 -KPACVDGIVTDLPF 394 (494)
Q Consensus 381 -~~~~~D~IVtNPPY 394 (494)
..+.+|.||.+..+
T Consensus 85 ~~~~~id~vi~~ag~ 99 (259)
T PRK08213 85 ERFGHVDILVNNAGA 99 (259)
T ss_pred HHhCCCCEEEECCCC
Confidence 01468999998764
No 404
>PRK06139 short chain dehydrogenase; Provisional
Probab=28.51 E-value=5.4e+02 Score=26.34 Aligned_cols=77 Identities=13% Similarity=0.092 Sum_probs=49.7
Q ss_pred CCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc----C-----
Q psy19 312 GDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC----F----- 380 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~----~----- 380 (494)
+.++|=.|+ ||.|+.+.+..+ .+..|+.++.++..++.....+...+. .+.++..|+.+.. +
T Consensus 7 ~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~------~~~~~~~Dv~d~~~v~~~~~~~~ 79 (330)
T PRK06139 7 GAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA------EVLVVPTDVTDADQVKALATQAA 79 (330)
T ss_pred CCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC------cEEEEEeeCCCHHHHHHHHHHHH
Confidence 456665555 566666655432 367899999999988887777765432 2455667765431 0
Q ss_pred -CCCCeeEEEEcCCCc
Q psy19 381 -KPACVDGIVTDLPFG 395 (494)
Q Consensus 381 -~~~~~D~IVtNPPYG 395 (494)
..+.+|++|.|--++
T Consensus 80 ~~~g~iD~lVnnAG~~ 95 (330)
T PRK06139 80 SFGGRIDVWVNNVGVG 95 (330)
T ss_pred HhcCCCCEEEECCCcC
Confidence 015789999997543
No 405
>PRK08643 acetoin reductase; Validated
Probab=28.51 E-value=5e+02 Score=24.72 Aligned_cols=75 Identities=13% Similarity=0.028 Sum_probs=46.5
Q ss_pred EEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-----C-----C
Q psy19 314 VFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-----F-----K 381 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-----~-----~ 381 (494)
++|=.| |+|.++...+..+ .+.+++.++.++..++.....+...+ ..+.++.+|+.+.. + .
T Consensus 4 ~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~~~ 76 (256)
T PRK08643 4 VALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG------GKAIAVKADVSDRDQVFAAVRQVVDT 76 (256)
T ss_pred EEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 444444 5666766655442 36789999999887777766665432 13456777776532 0 1
Q ss_pred CCCeeEEEEcCCCc
Q psy19 382 PACVDGIVTDLPFG 395 (494)
Q Consensus 382 ~~~~D~IVtNPPYG 395 (494)
.+.+|++|.|-.+.
T Consensus 77 ~~~id~vi~~ag~~ 90 (256)
T PRK08643 77 FGDLNVVVNNAGVA 90 (256)
T ss_pred cCCCCEEEECCCCC
Confidence 14689999987553
No 406
>PRK08303 short chain dehydrogenase; Provisional
Probab=28.38 E-value=5.6e+02 Score=25.81 Aligned_cols=75 Identities=11% Similarity=-0.016 Sum_probs=43.6
Q ss_pred CCCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCH----------HHHHHHHHHHHhccCCCCcccceeeeeeccccc
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINE----------KLVLKTQANVLHNSGNLNRELKVSPLVCNVRQL 378 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~----------~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l 378 (494)
.+.++|-.|+++ .|+.+.|..+ .++.|+..+.+. +.++.+...+...+ ..+.++++|+.+.
T Consensus 7 ~~k~~lITGgs~-GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~Dv~~~ 79 (305)
T PRK08303 7 RGKVALVAGATR-GAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAG------GRGIAVQVDHLVP 79 (305)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcC------CceEEEEcCCCCH
Confidence 356777777654 4776666543 367888888763 33444434443322 1234667777654
Q ss_pred c-C---------CCCCeeEEEEcC
Q psy19 379 C-F---------KPACVDGIVTDL 392 (494)
Q Consensus 379 ~-~---------~~~~~D~IVtNP 392 (494)
. . .-+.+|++|.|.
T Consensus 80 ~~v~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 80 EQVRALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHHHHHcCCccEEEECC
Confidence 1 0 114789999997
No 407
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=27.82 E-value=3e+02 Score=22.95 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=18.0
Q ss_pred eeeeeeccccccCCCCCeeEEEEcCCCccc
Q psy19 368 VSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397 (494)
Q Consensus 368 i~~~~~Da~~l~~~~~~~D~IVtNPPYG~r 397 (494)
+++.+.++.+++-....+|+|++=||+...
T Consensus 34 ~~v~~~~~~e~~~~~~~~D~iv~t~~~~~~ 63 (94)
T PRK10310 34 VELIQCRVNEIETYMDGVHLICTTARVDRS 63 (94)
T ss_pred EEEEEecHHHHhhhcCCCCEEEECCccccc
Confidence 356666666553212457888887776443
No 408
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=27.70 E-value=4.8e+02 Score=24.51 Aligned_cols=77 Identities=17% Similarity=0.026 Sum_probs=47.2
Q ss_pred CCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-----C----
Q psy19 312 GDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-----F---- 380 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-----~---- 380 (494)
+.++|= ..|+|.++...+..+ .+..|++++.++..+..+...+...+ ..+.++.+|+.+.. +
T Consensus 6 ~~~ilI-tGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~ 78 (251)
T PRK12826 6 GRVALV-TGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG------GKARARQVDVRDRAALKAAVAAGV 78 (251)
T ss_pred CCEEEE-cCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEECCCCCHHHHHHHHHHHH
Confidence 446664 445777776665432 25689999999876666555555322 12567777776531 0
Q ss_pred -CCCCeeEEEEcCCCc
Q psy19 381 -KPACVDGIVTDLPFG 395 (494)
Q Consensus 381 -~~~~~D~IVtNPPYG 395 (494)
.-+.+|+||.+..+.
T Consensus 79 ~~~~~~d~vi~~ag~~ 94 (251)
T PRK12826 79 EDFGRLDILVANAGIF 94 (251)
T ss_pred HHhCCCCEEEECCCCC
Confidence 013689999988643
No 409
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=27.63 E-value=5.4e+02 Score=24.45 Aligned_cols=76 Identities=14% Similarity=0.083 Sum_probs=47.1
Q ss_pred CCEEEEEcCCcChHHHHHHhc--CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC---------
Q psy19 312 GDVFLDPMCGGGTIPVECSLS--YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF--------- 380 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~--~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~--------- 380 (494)
+.++| +..|+|.++..++.. ..+..|++++.++.....+...+...+ ..+.++.+|+.+...
T Consensus 7 ~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (262)
T PRK13394 7 GKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG------GKAIGVAMDVTNEDAVNAGIDKVA 79 (262)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC------ceEEEEECCCCCHHHHHHHHHHHH
Confidence 45566 455566776665543 236789999999977766666555332 234567788765420
Q ss_pred -CCCCeeEEEEcCCC
Q psy19 381 -KPACVDGIVTDLPF 394 (494)
Q Consensus 381 -~~~~~D~IVtNPPY 394 (494)
..+.+|+||.|.-+
T Consensus 80 ~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 80 ERFGSVDILVSNAGI 94 (262)
T ss_pred HHcCCCCEEEECCcc
Confidence 01358999998754
No 410
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.62 E-value=5.7e+02 Score=24.74 Aligned_cols=76 Identities=16% Similarity=0.157 Sum_probs=44.1
Q ss_pred CCCEEEEEcCCc-ChHHHHHHhcC--CCCeEEEEeCCH---HHHHHHHHHHHhccCCCCcccceeeeeecccccc-C---
Q psy19 311 PGDVFLDPMCGG-GTIPVECSLSY--PHTFFVCGDINE---KLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F--- 380 (494)
Q Consensus 311 ~g~~VLDP~CGS-GtilIEAA~~~--~~~~v~G~Did~---~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~--- 380 (494)
.+.++|=.|+++ +.|+.++|..+ .+.+|+..+.+. ..++.....+. + ..+.+++.|+.+.. .
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~--~------~~~~~~~~Dv~d~~~v~~~ 77 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE--G------QESLLLPCDVTSDEEITAC 77 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC--C------CceEEEecCCCCHHHHHHH
Confidence 356788888873 78888877653 356777776542 33333222211 1 23456667775531 0
Q ss_pred ------CCCCeeEEEEcCCC
Q psy19 381 ------KPACVDGIVTDLPF 394 (494)
Q Consensus 381 ------~~~~~D~IVtNPPY 394 (494)
.-+.+|++|.|.-+
T Consensus 78 ~~~~~~~~g~ld~lv~nag~ 97 (257)
T PRK08594 78 FETIKEEVGVIHGVAHCIAF 97 (257)
T ss_pred HHHHHHhCCCccEEEECccc
Confidence 12578999998754
No 411
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=27.39 E-value=3.8e+02 Score=27.31 Aligned_cols=96 Identities=14% Similarity=-0.001 Sum_probs=50.1
Q ss_pred CCCCCEEEEEcCCc-ChHHHHHHhcCCCCeEEEEeC---CHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCCCCC
Q psy19 309 PIPGDVFLDPMCGG-GTIPVECSLSYPHTFFVCGDI---NEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPAC 384 (494)
Q Consensus 309 ~~~g~~VLDP~CGS-GtilIEAA~~~~~~~v~G~Di---d~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~~~~ 384 (494)
..+|.+|+=.|||. |.+++.+|+. .++.+++++. ++.-++.+++ .|.. .+.....|..+... ...
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~-~G~~vi~~~~~~~~~~~~~~~~~----~Ga~-----~v~~~~~~~~~~~~-~~~ 238 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRL-RGFEVYVLNRRDPPDPKADIVEE----LGAT-----YVNSSKTPVAEVKL-VGE 238 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHH----cCCE-----EecCCccchhhhhh-cCC
Confidence 45778888776642 3333444443 3568999886 6766666653 2320 11111111111101 135
Q ss_pred eeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Q psy19 385 VDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430 (494)
Q Consensus 385 ~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt 430 (494)
+|+|+- ..+.. ..+..+.+.|+++ |+++++.
T Consensus 239 ~d~vid------~~g~~--------~~~~~~~~~l~~~-G~~v~~G 269 (355)
T cd08230 239 FDLIIE------ATGVP--------PLAFEALPALAPN-GVVILFG 269 (355)
T ss_pred CCEEEE------CcCCH--------HHHHHHHHHccCC-cEEEEEe
Confidence 777765 12221 1334677889999 9887753
No 412
>PRK06101 short chain dehydrogenase; Provisional
Probab=26.84 E-value=5.2e+02 Score=24.48 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=38.2
Q ss_pred CCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C----C--CCCeeEEEE
Q psy19 320 CGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F----K--PACVDGIVT 390 (494)
Q Consensus 320 CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~----~--~~~~D~IVt 390 (494)
-|+|.++.+.+..+ .+..|+.++.++..++..... + ..+.++.+|+.+.. . . ....|.+|.
T Consensus 8 Gas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~----~------~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~ 77 (240)
T PRK06101 8 GATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ----S------ANIFTLAFDVTDHPGTKAALSQLPFIPELWIF 77 (240)
T ss_pred cCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh----c------CCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence 35777877766442 367899999988755433221 1 12456777776542 0 0 123578888
Q ss_pred cCCC
Q psy19 391 DLPF 394 (494)
Q Consensus 391 NPPY 394 (494)
|...
T Consensus 78 ~ag~ 81 (240)
T PRK06101 78 NAGD 81 (240)
T ss_pred cCcc
Confidence 8754
No 413
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=26.52 E-value=1.8e+02 Score=29.79 Aligned_cols=44 Identities=11% Similarity=-0.086 Sum_probs=30.3
Q ss_pred CCCCCCEEEEEcCCcChHHH---HHHhc-CCCCeEEEEeCCHHHHHHHHH
Q psy19 308 SPIPGDVFLDPMCGGGTIPV---ECSLS-YPHTFFVCGDINEKLVLKTQA 353 (494)
Q Consensus 308 ~~~~g~~VLDP~CGSGtilI---EAA~~-~~~~~v~G~Did~~al~~Ar~ 353 (494)
..++|++||=.||| .+++ .+|.. +.+..++++|.++.-++.|+.
T Consensus 160 ~~~~g~~VlV~G~G--~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 160 AHKDRNVIGVWGDG--NLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCCEEEEECCC--HHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 35678999988764 4543 33432 334679999999988887764
No 414
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=26.32 E-value=2e+02 Score=29.68 Aligned_cols=48 Identities=19% Similarity=0.089 Sum_probs=32.3
Q ss_pred HHhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCC-eEEEEeCCHHHHHHHHH
Q psy19 305 RLASPIPGDVFLDPMCGG-GTIPVECSLSYPHT-FFVCGDINEKLVLKTQA 353 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~-~v~G~Did~~al~~Ar~ 353 (494)
..+..++|++||=.+||. |.+++.+|+.. ++ .|+++|.+++.++.|++
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~-G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 179 NTAKVEEGDTVAVFGLGGIGLSVIQGARMA-KASRIIAIDINPAKFELAKK 228 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH
Confidence 456677888888776532 33344445443 55 79999999988887754
No 415
>PRK07326 short chain dehydrogenase; Provisional
Probab=26.24 E-value=5.4e+02 Score=24.03 Aligned_cols=74 Identities=16% Similarity=0.100 Sum_probs=46.3
Q ss_pred CCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-----CC---
Q psy19 312 GDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-----FK--- 381 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-----~~--- 381 (494)
+..+|=.| |+|.++..++..+ .+..|++++.++.........+... ..+.++.+|+.+.. +.
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-------~~~~~~~~D~~~~~~~~~~~~~~~ 77 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK-------GNVLGLAADVRDEADVQRAVDAIV 77 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc-------CcEEEEEccCCCHHHHHHHHHHHH
Confidence 45677666 5777877766542 3678999999987766665555421 23456777765431 10
Q ss_pred --CCCeeEEEEcCC
Q psy19 382 --PACVDGIVTDLP 393 (494)
Q Consensus 382 --~~~~D~IVtNPP 393 (494)
.+.+|+||.+.-
T Consensus 78 ~~~~~~d~vi~~ag 91 (237)
T PRK07326 78 AAFGGLDVLIANAG 91 (237)
T ss_pred HHcCCCCEEEECCC
Confidence 136899998753
No 416
>PRK06223 malate dehydrogenase; Reviewed
Probab=25.74 E-value=6.4e+02 Score=25.30 Aligned_cols=120 Identities=13% Similarity=-0.009 Sum_probs=55.6
Q ss_pred EEEEEcCCc-ChHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHHHHhccCCCCcccceeee-eeccccccCCCCCeeEEEE
Q psy19 314 VFLDPMCGG-GTIPVECSLSYPHT-FFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPL-VCNVRQLCFKPACVDGIVT 390 (494)
Q Consensus 314 ~VLDP~CGS-GtilIEAA~~~~~~-~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~-~~Da~~l~~~~~~~D~IVt 390 (494)
+|.=.|+|+ |.-....+... +. .++.+|++++..+....-+......... ...+. ..|... +. ..|+||.
T Consensus 4 KI~VIGaG~vG~~ia~~la~~-~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~--~~~i~~~~d~~~--~~--~aDiVii 76 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALK-ELGDVVLFDIVEGVPQGKALDIAEAAPVEGF--DTKITGTNDYED--IA--GSDVVVI 76 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEEECCCchhHHHHHHHHhhhhhcCC--CcEEEeCCCHHH--HC--CCCEEEE
Confidence 455667776 44333322222 22 8999999988754332222221110011 11222 134332 22 3466654
Q ss_pred --cCCCccccC---CccchHHHHHHHHHHHhhcccCCCcEEEEEecCHHHHHHHHHh
Q psy19 391 --DLPFGKRVG---SKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHI 442 (494)
Q Consensus 391 --NPPYG~r~~---~~~~~~~ly~~fL~~l~rvLkpg~G~lvllt~~~~~l~~~l~~ 442 (494)
..|...... .......++..+++.+.+.. |. +.+++++.-...+-..+.+
T Consensus 77 ~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~-~~viv~tNP~d~~~~~~~~ 131 (307)
T PRK06223 77 TAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PD-AIVIVVTNPVDAMTYVALK 131 (307)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CC-eEEEEecCcHHHHHHHHHH
Confidence 455432111 01134466777777777776 55 5555555433434444443
No 417
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=25.68 E-value=1.1e+02 Score=31.38 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=31.0
Q ss_pred cchHHHHHHHHHHhC----CCCCCEEEEEcCCcChHHHHHH
Q psy19 294 TLKPTIAYNMVRLAS----PIPGDVFLDPMCGGGTIPVECS 330 (494)
Q Consensus 294 ~L~e~lAa~ll~la~----~~~g~~VLDP~CGSGtilIEAA 330 (494)
|++..+|..|+..+. .++|.+|+++-.|.-.|++..+
T Consensus 40 SvKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~LA~v 80 (300)
T COG0031 40 SVKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMV 80 (300)
T ss_pred chhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHHHHH
Confidence 699999999999874 6899999999988877766543
No 418
>PRK06500 short chain dehydrogenase; Provisional
Probab=25.63 E-value=4e+02 Score=25.16 Aligned_cols=74 Identities=9% Similarity=0.071 Sum_probs=42.2
Q ss_pred CCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC---------
Q psy19 312 GDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF--------- 380 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~--------- 380 (494)
+.++|=.| |+|.++...+..+ .+..+++++.++..+......+ + ..+.++++|..+..-
T Consensus 6 ~k~vlItG-asg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~---~------~~~~~~~~D~~~~~~~~~~~~~~~ 75 (249)
T PRK06500 6 GKTALITG-GTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL---G------ESALVIRADAGDVAAQKALAQALA 75 (249)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh---C------CceEEEEecCCCHHHHHHHHHHHH
Confidence 34455444 4566766655432 3678999998876555443322 1 123456666654310
Q ss_pred -CCCCeeEEEEcCCCc
Q psy19 381 -KPACVDGIVTDLPFG 395 (494)
Q Consensus 381 -~~~~~D~IVtNPPYG 395 (494)
..+.+|+||.|..+.
T Consensus 76 ~~~~~id~vi~~ag~~ 91 (249)
T PRK06500 76 EAFGRLDAVFINAGVA 91 (249)
T ss_pred HHhCCCCEEEECCCCC
Confidence 014689999988654
No 419
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=25.41 E-value=5.9e+02 Score=24.20 Aligned_cols=76 Identities=13% Similarity=0.077 Sum_probs=47.1
Q ss_pred CCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-----C----
Q psy19 312 GDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-----F---- 380 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-----~---- 380 (494)
+.++|=.| |+|.++...+... .+..++..+.++..+......+...+ ..+.++.+|+.+.. +
T Consensus 9 ~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (254)
T PRK08085 9 GKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG------IKAHAAPFNVTHKQEVEAAIEHIE 81 (254)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC------CeEEEEecCCCCHHHHHHHHHHHH
Confidence 44566555 5666776666442 36789999999877776666665332 12345666765431 0
Q ss_pred -CCCCeeEEEEcCCC
Q psy19 381 -KPACVDGIVTDLPF 394 (494)
Q Consensus 381 -~~~~~D~IVtNPPY 394 (494)
..+.+|+||.|.-+
T Consensus 82 ~~~~~id~vi~~ag~ 96 (254)
T PRK08085 82 KDIGPIDVLINNAGI 96 (254)
T ss_pred HhcCCCCEEEECCCc
Confidence 11468999998854
No 420
>PRK08339 short chain dehydrogenase; Provisional
Probab=25.40 E-value=6.3e+02 Score=24.49 Aligned_cols=76 Identities=13% Similarity=0.075 Sum_probs=46.6
Q ss_pred CCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C--------
Q psy19 312 GDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F-------- 380 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~-------- 380 (494)
+.++|=.|++ |.|+.+.|..+ .+.+|+..+.++..++.+...+.... ..++.++.+|+.+.. .
T Consensus 8 ~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (263)
T PRK08339 8 GKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-----NVDVSYIVADLTKREDLERTVKELK 81 (263)
T ss_pred CCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCCHHHHHHHHHHHH
Confidence 4566655554 55666555442 36789999999888777766664321 123456777776541 0
Q ss_pred CCCCeeEEEEcCC
Q psy19 381 KPACVDGIVTDLP 393 (494)
Q Consensus 381 ~~~~~D~IVtNPP 393 (494)
.-+.+|++|.|.-
T Consensus 82 ~~g~iD~lv~nag 94 (263)
T PRK08339 82 NIGEPDIFFFSTG 94 (263)
T ss_pred hhCCCcEEEECCC
Confidence 1146899998863
No 421
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=25.30 E-value=92 Score=31.11 Aligned_cols=101 Identities=10% Similarity=-0.046 Sum_probs=45.0
Q ss_pred CCCEEEEEc-------CCcChHHHHHHhcCCCCe-EEEE-eCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccCC
Q psy19 311 PGDVFLDPM-------CGGGTIPVECSLSYPHTF-FVCG-DINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381 (494)
Q Consensus 311 ~g~~VLDP~-------CGSGtilIEAA~~~~~~~-v~G~-Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~~ 381 (494)
.|-+++||- --.-..+..|..+|+.+. ++-. =++...++...+.++..+... ...+++....... +..
T Consensus 126 RglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~~~~~~--~l~~El~v~~~~~-~~g 202 (245)
T PF04378_consen 126 RGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKALGIKK--VLRAELRVRPPDS-PRG 202 (245)
T ss_dssp -EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHH-SSE---EEEEEE---SS----S
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHhcCCCC--eEEEEEEecCCCC-cCc
Confidence 456677772 112233445556676542 1111 245666676667776554310 0112222111110 111
Q ss_pred CCCeeEEEEcCCCccccCCccchHHHHHHHHHHHhhcccCC
Q psy19 382 PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQ 422 (494)
Q Consensus 382 ~~~~D~IVtNPPYG~r~~~~~~~~~ly~~fL~~l~rvLkpg 422 (494)
=..-.++|.||||+.. .-.+.++..+.+.|.++
T Consensus 203 m~GSGm~iiNPPw~l~--------~~l~~~l~~L~~~L~~~ 235 (245)
T PF04378_consen 203 MNGSGMLIINPPWTLD--------EELEEILPWLAETLAQD 235 (245)
T ss_dssp --EEEEEEES--TTHH--------HHHHHHHHHHHHHSSTT
T ss_pred eecceEEEEcCCccHH--------HHHHHHHHHHHHHhCcC
Confidence 1256899999999843 23456667788888876
No 422
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.77 E-value=6.3e+02 Score=24.27 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=44.1
Q ss_pred CCCEEEEEcCCc-ChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C------
Q psy19 311 PGDVFLDPMCGG-GTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F------ 380 (494)
Q Consensus 311 ~g~~VLDP~CGS-GtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~------ 380 (494)
.+.++|-.|.++ +.|+.+.|..+ .+.+|+..+.+....+.+++. . + ..+.+++.|+.+.. .
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~-~--~------~~~~~~~~Dl~~~~~v~~~~~~ 76 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL-V--D------EEDLLVECDVASDESIERAFAT 76 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh-c--c------CceeEEeCCCCCHHHHHHHHHH
Confidence 456777777664 56776666543 367888887774433222221 1 1 12456777776531 0
Q ss_pred ---CCCCeeEEEEcCCCc
Q psy19 381 ---KPACVDGIVTDLPFG 395 (494)
Q Consensus 381 ---~~~~~D~IVtNPPYG 395 (494)
.-+.+|++|.|.-+.
T Consensus 77 ~~~~~g~iD~lv~nAg~~ 94 (252)
T PRK06079 77 IKERVGKIDGIVHAIAYA 94 (252)
T ss_pred HHHHhCCCCEEEEccccc
Confidence 115789999997653
No 423
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=24.74 E-value=2.3e+02 Score=30.10 Aligned_cols=51 Identities=16% Similarity=0.036 Sum_probs=36.5
Q ss_pred HHhCCCCCCEEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHh
Q psy19 305 RLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH 357 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~ 357 (494)
......++++||-+..|....+- .+...| .+|+++|+||..+...+-.+.+
T Consensus 29 ~aL~i~~~d~vl~ItSaG~N~L~-yL~~~P-~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 29 EALNIGPDDRVLTITSAGCNALD-YLLAGP-KRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred HHhCCCCCCeEEEEccCCchHHH-HHhcCC-ceEEEEeCCHHHHHHHHHHHHH
Confidence 44566789999998766555544 344545 7999999999988877655543
No 424
>PRK06196 oxidoreductase; Provisional
Probab=24.69 E-value=7.1e+02 Score=24.86 Aligned_cols=73 Identities=10% Similarity=0.108 Sum_probs=45.8
Q ss_pred CCCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C-------
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F------- 380 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~------- 380 (494)
.+.++|=.| |+|.|+.+++..+ .+..|++++.++..++.+...+.. +.++.+|+.+.. .
T Consensus 25 ~~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~----------v~~~~~Dl~d~~~v~~~~~~~ 93 (315)
T PRK06196 25 SGKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDG----------VEVVMLDLADLESVRAFAERF 93 (315)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhh----------CeEEEccCCCHHHHHHHHHHH
Confidence 345677666 4566777766542 367899999988766555443321 346667776542 0
Q ss_pred --CCCCeeEEEEcCCC
Q psy19 381 --KPACVDGIVTDLPF 394 (494)
Q Consensus 381 --~~~~~D~IVtNPPY 394 (494)
..+.+|++|.|..+
T Consensus 94 ~~~~~~iD~li~nAg~ 109 (315)
T PRK06196 94 LDSGRRIDILINNAGV 109 (315)
T ss_pred HhcCCCCCEEEECCCC
Confidence 11468999998764
No 425
>PRK06181 short chain dehydrogenase; Provisional
Probab=24.63 E-value=4.1e+02 Score=25.42 Aligned_cols=72 Identities=11% Similarity=0.033 Sum_probs=44.4
Q ss_pred EEEEEcCCcChHHHHHHhc--CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C---------C
Q psy19 314 VFLDPMCGGGTIPVECSLS--YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F---------K 381 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~--~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~---------~ 381 (494)
++|=.| |+|.++.+++.. -.+..|++++.++...+.....+...+ ..+.+..+|+.+.. . .
T Consensus 3 ~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~~~ 75 (263)
T PRK06181 3 VVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG------GEALVVPTDVSDAEACERLIEAAVAR 75 (263)
T ss_pred EEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 455444 566677666543 235789999999877766655555332 23456777876542 0 0
Q ss_pred CCCeeEEEEcC
Q psy19 382 PACVDGIVTDL 392 (494)
Q Consensus 382 ~~~~D~IVtNP 392 (494)
-+.+|+||.+.
T Consensus 76 ~~~id~vi~~a 86 (263)
T PRK06181 76 FGGIDILVNNA 86 (263)
T ss_pred cCCCCEEEECC
Confidence 13689999885
No 426
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=24.55 E-value=1.9e+02 Score=29.46 Aligned_cols=51 Identities=14% Similarity=-0.022 Sum_probs=33.9
Q ss_pred HHHHHhCCCCCCEEEEEcCC-cChHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q psy19 302 NMVRLASPIPGDVFLDPMCG-GGTIPVECSLSYPHTFFVCGDINEKLVLKTQA 353 (494)
Q Consensus 302 ~ll~la~~~~g~~VLDP~CG-SGtilIEAA~~~~~~~v~G~Did~~al~~Ar~ 353 (494)
..+..+..++|++||=.+|| .|.+++..|+. .++.+++++.++.-.+.|++
T Consensus 156 ~~~~~~~~~~g~~VlV~G~g~iG~~a~~~a~~-~G~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 156 RALLRASLPPGGRLGLYGFGGSAHLTAQVALA-QGATVHVMTRGAAARRLALA 207 (329)
T ss_pred HHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHH-CCCeEEEEeCChHHHHHHHH
Confidence 33445677889999888764 33334444444 36789999999887766655
No 427
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=24.53 E-value=87 Score=29.51 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=16.3
Q ss_pred HHHHHhhcccCCCcEEEEEec
Q psy19 411 FLIEIGKIVRPQIGRAILLTS 431 (494)
Q Consensus 411 fL~~l~rvLkpg~G~lvllt~ 431 (494)
.+..+.++||+| |.+++..|
T Consensus 93 ~m~~i~~vLK~G-G~L~l~vP 112 (177)
T PF03269_consen 93 AMAKIKCVLKPG-GLLFLGVP 112 (177)
T ss_pred HHHHHHHhhccC-CeEEEEee
Confidence 344688999999 99998777
No 428
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=24.35 E-value=58 Score=31.71 Aligned_cols=29 Identities=14% Similarity=0.043 Sum_probs=16.5
Q ss_pred eeeeeeccccccCC-CCCeeEEEEcCCCcc
Q psy19 368 VSPLVCNVRQLCFK-PACVDGIVTDLPFGK 396 (494)
Q Consensus 368 i~~~~~Da~~l~~~-~~~~D~IVtNPPYG~ 396 (494)
+.+.+.|+..+-.. +..-|+|.+||||-.
T Consensus 160 ~~i~~~d~~~~~~~~~~~~d~vYlDPPY~~ 189 (260)
T PF02086_consen 160 VEIENRDFDEVIERYDSPNDFVYLDPPYYS 189 (260)
T ss_dssp EEEEEC-CHGGGTT--TTE-EEEE--S-TT
T ss_pred ceeEehhHHHHHhhccCCCeEEEEcCcccc
Confidence 46778888776322 357889999999965
No 429
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.29 E-value=2.4e+02 Score=26.61 Aligned_cols=77 Identities=10% Similarity=0.024 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C-------
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F------- 380 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~------- 380 (494)
.+.++|=.|+ +|.++..++..+ .+..++.++.++..++.+...+...+ ..+.+++.|+.+.. .
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~ 76 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG------TEVRGYAANVTDEEDVEATFAQI 76 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEcCCCCHHHHHHHHHHH
Confidence 3557776665 566666665432 35789999999877766665555332 23456777765431 0
Q ss_pred --CCCCeeEEEEcCCC
Q psy19 381 --KPACVDGIVTDLPF 394 (494)
Q Consensus 381 --~~~~~D~IVtNPPY 394 (494)
.-+.+|.||.|..+
T Consensus 77 ~~~~~~id~vi~~ag~ 92 (253)
T PRK08217 77 AEDFGQLNGLINNAGI 92 (253)
T ss_pred HHHcCCCCEEEECCCc
Confidence 01468999998754
No 430
>PRK05867 short chain dehydrogenase; Provisional
Probab=23.91 E-value=6.4e+02 Score=24.02 Aligned_cols=78 Identities=18% Similarity=0.128 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C-------
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F------- 380 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~------- 380 (494)
.+.++|=.|+ +|.|+.+.+..+ .+.+|+..+.++..++.....+...+ ..+.++.+|+.+.. .
T Consensus 8 ~~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~~~~~~~~~~~ 80 (253)
T PRK05867 8 HGKRALITGA-STGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG------GKVVPVCCDVSQHQQVTSMLDQV 80 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC------CeEEEEEccCCCHHHHHHHHHHH
Confidence 3567777776 455666655442 36789999999888777766665432 23456677776531 0
Q ss_pred --CCCCeeEEEEcCCCc
Q psy19 381 --KPACVDGIVTDLPFG 395 (494)
Q Consensus 381 --~~~~~D~IVtNPPYG 395 (494)
.-+.+|++|.|.-+.
T Consensus 81 ~~~~g~id~lv~~ag~~ 97 (253)
T PRK05867 81 TAELGGIDIAVCNAGII 97 (253)
T ss_pred HHHhCCCCEEEECCCCC
Confidence 014789999997543
No 431
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=23.89 E-value=53 Score=31.64 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=29.7
Q ss_pred CCEEEEEcCCcChHHHHHHhc-----CC--CCeEEEEeCCHHHHHHHHHHHH
Q psy19 312 GDVFLDPMCGGGTIPVECSLS-----YP--HTFFVCGDINEKLVLKTQANVL 356 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~-----~~--~~~v~G~Did~~al~~Ar~Nl~ 356 (494)
.-.|+|||++||.-++.+... ++ ...++++=.+++.++....+.-
T Consensus 123 ~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~v~~ias~~Gl~~l~~~~P 174 (207)
T PF14681_consen 123 KVILLDPMLATGGSAIAAIEILKEHGVPEENIIIVSVIASPEGLERLLKAFP 174 (207)
T ss_dssp EEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEEEEEEEEHHHHHHHHHHST
T ss_pred EEEEEeccccchhhHHHHHHHHHHcCCCcceEEEEEEEecHHHHHHHHHhCC
Confidence 357999999999988776543 11 1344555667777776665543
No 432
>KOG1205|consensus
Probab=23.80 E-value=7.9e+02 Score=25.07 Aligned_cols=80 Identities=16% Similarity=0.065 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCcC---hHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeeccccccC-------
Q psy19 311 PGDVFLDPMCGGG---TIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCF------- 380 (494)
Q Consensus 311 ~g~~VLDP~CGSG---tilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~~------- 380 (494)
.+.+|+=-||-|| .++.+.|.. +++++-+-...+.++...+-++..+-. .++.++++|..+...
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~--G~~l~lvar~~rrl~~v~~~l~~~~~~----~~v~~~~~Dvs~~~~~~~~~~~ 84 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKR--GAKLVLVARRARRLERVAEELRKLGSL----EKVLVLQLDVSDEESVKKFVEW 84 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhC--CCceEEeehhhhhHHHHHHHHHHhCCc----CccEEEeCccCCHHHHHHHHHH
Confidence 4678888899887 233444444 666666666677777776666654421 156788898877521
Q ss_pred ---CCCCeeEEEEcCCCcc
Q psy19 381 ---KPACVDGIVTDLPFGK 396 (494)
Q Consensus 381 ---~~~~~D~IVtNPPYG~ 396 (494)
.-+..|+.|.|-=++.
T Consensus 85 ~~~~fg~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 85 AIRHFGRVDVLVNNAGISL 103 (282)
T ss_pred HHHhcCCCCEEEecCcccc
Confidence 2368999999977665
No 433
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=23.61 E-value=2.4e+02 Score=27.36 Aligned_cols=49 Identities=20% Similarity=0.061 Sum_probs=32.5
Q ss_pred HHHhCCCCCCEEEEEcCCc-ChHHHHHHhcCCCCe-EEEEeCCHHHHHHHHH
Q psy19 304 VRLASPIPGDVFLDPMCGG-GTIPVECSLSYPHTF-FVCGDINEKLVLKTQA 353 (494)
Q Consensus 304 l~la~~~~g~~VLDP~CGS-GtilIEAA~~~~~~~-v~G~Did~~al~~Ar~ 353 (494)
+..+...++++||=.+||. |..++..|... +.. +++++.+++....++.
T Consensus 90 ~~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 90 VRDAEPRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEA 140 (277)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHH
Confidence 4456677788777766654 44555555543 566 9999998887766554
No 434
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=23.54 E-value=6.4e+02 Score=23.94 Aligned_cols=77 Identities=12% Similarity=0.070 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C-------
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F------- 380 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~------- 380 (494)
.+.+++=.| |+|.++...+..+ .+..|+.++.++..+......++..+ ..+.++.+|+.+.. .
T Consensus 10 ~~k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~ 82 (256)
T PRK06124 10 AGQVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG------GAAEALAFDIADEEAVAAAFARI 82 (256)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC------CceEEEEccCCCHHHHHHHHHHH
Confidence 456777666 4666666655432 36789999999887766666555432 12456777765431 0
Q ss_pred --CCCCeeEEEEcCCC
Q psy19 381 --KPACVDGIVTDLPF 394 (494)
Q Consensus 381 --~~~~~D~IVtNPPY 394 (494)
.-+.+|.||.|.-+
T Consensus 83 ~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 83 DAEHGRLDILVNNVGA 98 (256)
T ss_pred HHhcCCCCEEEECCCC
Confidence 11467999998754
No 435
>PRK08324 short chain dehydrogenase; Validated
Probab=23.47 E-value=7.1e+02 Score=28.38 Aligned_cols=76 Identities=20% Similarity=0.198 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCcChHHHHHHhc--CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-----C---
Q psy19 311 PGDVFLDPMCGGGTIPVECSLS--YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-----F--- 380 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~--~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-----~--- 380 (494)
.|.++|=.|+ +|.|+..++.. ..+..|+++|.++..++.+...+... ..+.++.+|+.+.. +
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~-------~~v~~v~~Dvtd~~~v~~~~~~~ 492 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP-------DRALGVACDVTDEAAVQAAFEEA 492 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc-------CcEEEEEecCCCHHHHHHHHHHH
Confidence 4567776554 56676665543 23678999999998776665544321 23456777765431 1
Q ss_pred --CCCCeeEEEEcCCC
Q psy19 381 --KPACVDGIVTDLPF 394 (494)
Q Consensus 381 --~~~~~D~IVtNPPY 394 (494)
..+.+|+||.|.-+
T Consensus 493 ~~~~g~iDvvI~~AG~ 508 (681)
T PRK08324 493 ALAFGGVDIVVSNAGI 508 (681)
T ss_pred HHHcCCCCEEEECCCC
Confidence 01468999998754
No 436
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.46 E-value=6.7e+02 Score=24.15 Aligned_cols=76 Identities=14% Similarity=0.123 Sum_probs=45.1
Q ss_pred CCCEEEEEcCC-cChHHHHHHhcC--CCCeEEEEeCCH--HHHHHHHHHHHhccCCCCcccceeeeeecccccc-C----
Q psy19 311 PGDVFLDPMCG-GGTIPVECSLSY--PHTFFVCGDINE--KLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F---- 380 (494)
Q Consensus 311 ~g~~VLDP~CG-SGtilIEAA~~~--~~~~v~G~Did~--~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~---- 380 (494)
.+.++|=.|+| ++.|+.+.|..+ .+..|+..+.+. +.++.....+. ..+.++..|+.+.. .
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~i~~~~ 76 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP---------EPAPVLELDVTNEEHLASLA 76 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC---------CCCcEEeCCCCCHHHHHHHH
Confidence 35678888885 688888877642 367888887653 33333322221 12345666765431 0
Q ss_pred -----CCCCeeEEEEcCCCc
Q psy19 381 -----KPACVDGIVTDLPFG 395 (494)
Q Consensus 381 -----~~~~~D~IVtNPPYG 395 (494)
..+.+|++|.|.-+.
T Consensus 77 ~~~~~~~g~iD~li~nAG~~ 96 (256)
T PRK07889 77 DRVREHVDGLDGVVHSIGFA 96 (256)
T ss_pred HHHHHHcCCCcEEEEccccc
Confidence 125799999987543
No 437
>PRK07904 short chain dehydrogenase; Provisional
Probab=23.31 E-value=6.8e+02 Score=24.13 Aligned_cols=78 Identities=10% Similarity=-0.018 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCcChHHHHHHhcC--C-CCeEEEEeCCHHH-HHHHHHHHHhccCCCCcccceeeeeecccccc-----C-
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSY--P-HTFFVCGDINEKL-VLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-----F- 380 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~--~-~~~v~G~Did~~a-l~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-----~- 380 (494)
.+.++|=.|| +|.++.+.|..+ . +..|+.++.++.. ++.+...+...+. ..+.++.+|+.+.. .
T Consensus 7 ~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-----~~v~~~~~D~~~~~~~~~~~~ 80 (253)
T PRK07904 7 NPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-----SSVEVIDFDALDTDSHPKVID 80 (253)
T ss_pred CCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-----CceEEEEecCCChHHHHHHHH
Confidence 4556777776 566776666542 2 3688888888764 5655555554321 23567778875532 0
Q ss_pred ---CCCCeeEEEEcCCC
Q psy19 381 ---KPACVDGIVTDLPF 394 (494)
Q Consensus 381 ---~~~~~D~IVtNPPY 394 (494)
..+.+|++|.|..+
T Consensus 81 ~~~~~g~id~li~~ag~ 97 (253)
T PRK07904 81 AAFAGGDVDVAIVAFGL 97 (253)
T ss_pred HHHhcCCCCEEEEeeec
Confidence 11479999988654
No 438
>PRK09242 tropinone reductase; Provisional
Probab=23.28 E-value=6.6e+02 Score=23.95 Aligned_cols=80 Identities=10% Similarity=0.005 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-----C---
Q psy19 311 PGDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-----F--- 380 (494)
Q Consensus 311 ~g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-----~--- 380 (494)
.+.++|=.|+ +|.++.+.+..+ .+..|+.++.+++.++....++....- ...+.++.+|+.+.. +
T Consensus 8 ~~k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (257)
T PRK09242 8 DGQTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFP----EREVHGLAADVSDDEDRRAILDWV 82 (257)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC----CCeEEEEECCCCCHHHHHHHHHHH
Confidence 3556777666 455665555442 367899999998887777766654310 123566777876531 0
Q ss_pred --CCCCeeEEEEcCCCc
Q psy19 381 --KPACVDGIVTDLPFG 395 (494)
Q Consensus 381 --~~~~~D~IVtNPPYG 395 (494)
.-+.+|.||.+.-+.
T Consensus 83 ~~~~g~id~li~~ag~~ 99 (257)
T PRK09242 83 EDHWDGLHILVNNAGGN 99 (257)
T ss_pred HHHcCCCCEEEECCCCC
Confidence 114689999988653
No 439
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=22.51 E-value=6.8e+02 Score=25.22 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=29.1
Q ss_pred HHhCCCCCCEEEEEcCCcChHHHH---HHhcCCCCe-EEEEeCCHHHHHHHH
Q psy19 305 RLASPIPGDVFLDPMCGGGTIPVE---CSLSYPHTF-FVCGDINEKLVLKTQ 352 (494)
Q Consensus 305 ~la~~~~g~~VLDP~CGSGtilIE---AA~~~~~~~-v~G~Did~~al~~Ar 352 (494)
..+...++++||=.+| |+++.. +|... ++. +++++.++...+.++
T Consensus 154 ~~~~~~~g~~vlV~G~--g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~ 202 (347)
T PRK10309 154 HLAQGCEGKNVIIIGA--GTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAK 202 (347)
T ss_pred HhcCCCCCCEEEEECC--CHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHH
Confidence 4456677888877755 445444 34332 554 788999998877764
No 440
>PRK05884 short chain dehydrogenase; Provisional
Probab=22.17 E-value=3.6e+02 Score=25.51 Aligned_cols=62 Identities=13% Similarity=0.109 Sum_probs=35.1
Q ss_pred CcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-----CC--CCCeeEEEEc
Q psy19 321 GGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-----FK--PACVDGIVTD 391 (494)
Q Consensus 321 GSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-----~~--~~~~D~IVtN 391 (494)
|+|.++.+.+..+ .+..++..+.+++.++.....+. +.++.+|+.+.. +. ...+|++|.|
T Consensus 8 as~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~-----------~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ 76 (223)
T PRK05884 8 GDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELD-----------VDAIVCDNTDPASLEEARGLFPHHLDTIVNV 76 (223)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc-----------CcEEecCCCCHHHHHHHHHHHhhcCcEEEEC
Confidence 4455666655443 36788889998876654433221 134556655431 00 1258999988
Q ss_pred CC
Q psy19 392 LP 393 (494)
Q Consensus 392 PP 393 (494)
..
T Consensus 77 ag 78 (223)
T PRK05884 77 PA 78 (223)
T ss_pred CC
Confidence 54
No 441
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=21.47 E-value=91 Score=32.16 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=21.4
Q ss_pred HHHHHHHHhhcccCCCcEEEEEecCH
Q psy19 408 YRLFLIEIGKIVRPQIGRAILLTSDR 433 (494)
Q Consensus 408 y~~fL~~l~rvLkpg~G~lvllt~~~ 433 (494)
...+|..+..+|+|| |++++||-+.
T Consensus 219 L~~~L~~~~~~L~~g-Grl~VISfHS 243 (305)
T TIGR00006 219 LEEALQFAPNLLAPG-GRLSIISFHS 243 (305)
T ss_pred HHHHHHHHHHHhcCC-CEEEEEecCc
Confidence 446888999999999 9999998853
No 442
>KOG4174|consensus
Probab=21.36 E-value=2.4e+02 Score=28.54 Aligned_cols=59 Identities=22% Similarity=0.318 Sum_probs=40.4
Q ss_pred eeeeccccccC----CCCCeeEEEEcCCC-ccccCCcc------chHHHHHHHHHHHhhcccCCCcEEEE
Q psy19 370 PLVCNVRQLCF----KPACVDGIVTDLPF-GKRVGSKS------NNFLLYRLFLIEIGKIVRPQIGRAIL 428 (494)
Q Consensus 370 ~~~~Da~~l~~----~~~~~D~IVtNPPY-G~r~~~~~------~~~~ly~~fL~~l~rvLkpg~G~lvl 428 (494)
+...|++.+.+ .-..+|-||.|.|+ |..+.... ...+|.+.|++.+...|+.+.|.+.+
T Consensus 119 ~h~Vdv~sl~~~~~~~~~~~d~IiFNFPH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~i 188 (282)
T KOG4174|consen 119 LHGVDVTSLKFHADLRLQRYDNIIFNFPHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHI 188 (282)
T ss_pred EecccceeEEecccccccccceEEEcCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 45567776633 34689999999997 44333111 14678889999999999944477666
No 443
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=21.33 E-value=86 Score=32.35 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.1
Q ss_pred HHHHHHHHhhcccCCCcEEEEEecC
Q psy19 408 YRLFLIEIGKIVRPQIGRAILLTSD 432 (494)
Q Consensus 408 y~~fL~~l~rvLkpg~G~lvllt~~ 432 (494)
...+|..+.++|+|| ||+++||-+
T Consensus 223 L~~~L~~a~~~L~~g-GRl~VIsFH 246 (314)
T COG0275 223 LEEALEAALDLLKPG-GRLAVISFH 246 (314)
T ss_pred HHHHHHHHHHhhCCC-cEEEEEEec
Confidence 567899999999999 999999875
No 444
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.29 E-value=2.9e+02 Score=27.66 Aligned_cols=43 Identities=9% Similarity=-0.007 Sum_probs=28.7
Q ss_pred EEEEEcCCcChHHHHHHhcCCCCeEEEEeCCHHHHHHHHHHHH
Q psy19 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVL 356 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~~~~~~v~G~Did~~al~~Ar~Nl~ 356 (494)
+|.=+|+|+-+..+.++....+..|+.+|.+++.++.++.++.
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~ 47 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIA 47 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 3454566654444444333346789999999999998887653
No 445
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=21.02 E-value=2.1e+02 Score=28.82 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=32.0
Q ss_pred HHHHhCCCCCCEEEEEcCCcChHHHHHHhcC-----CCCeEEEEeCCH
Q psy19 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSY-----PHTFFVCGDINE 345 (494)
Q Consensus 303 ll~la~~~~g~~VLDP~CGSGtilIEAA~~~-----~~~~v~G~Did~ 345 (494)
|-..--+.+...+++.|||.|.++-..+... +...++.+|...
T Consensus 10 l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 10 LEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred HHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 3333335677799999999999998888775 346788888754
No 446
>PRK06125 short chain dehydrogenase; Provisional
Probab=21.01 E-value=7.3e+02 Score=23.67 Aligned_cols=77 Identities=9% Similarity=0.015 Sum_probs=47.3
Q ss_pred CCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-----C-CCC
Q psy19 312 GDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-----F-KPA 383 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-----~-~~~ 383 (494)
+.++|=.|+ +|.++.+.+..+ .++.|++.+.++..++.+...+.... ..++.++..|+.+.. + .-+
T Consensus 7 ~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~g 80 (259)
T PRK06125 7 GKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-----GVDVAVHALDLSSPEAREQLAAEAG 80 (259)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCCHHHHHHHHHHhC
Confidence 456776675 555666655432 36789999999887776666555321 123456677775431 0 124
Q ss_pred CeeEEEEcCCC
Q psy19 384 CVDGIVTDLPF 394 (494)
Q Consensus 384 ~~D~IVtNPPY 394 (494)
.+|++|.|.-.
T Consensus 81 ~id~lv~~ag~ 91 (259)
T PRK06125 81 DIDILVNNAGA 91 (259)
T ss_pred CCCEEEECCCC
Confidence 78999998743
No 447
>PRK09291 short chain dehydrogenase; Provisional
Probab=20.78 E-value=7.2e+02 Score=23.50 Aligned_cols=74 Identities=14% Similarity=0.042 Sum_probs=44.8
Q ss_pred EEEEEcCCcChHHHHHHhc--CCCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc----CCCCCeeE
Q psy19 314 VFLDPMCGGGTIPVECSLS--YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC----FKPACVDG 387 (494)
Q Consensus 314 ~VLDP~CGSGtilIEAA~~--~~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~----~~~~~~D~ 387 (494)
++|=.|+ +|.++..++.. -.+..+++.+.++......+......+ ..+.++.+|+.+.. .....+|+
T Consensus 4 ~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~id~ 76 (257)
T PRK09291 4 TILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG------LALRVEKLDLTDAIDRAQAAEWDVDV 76 (257)
T ss_pred EEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcceEEEeeCCCHHHHHHHhcCCCCE
Confidence 5665555 66676665543 236789999888776555544444332 13567778876541 11247899
Q ss_pred EEEcCCC
Q psy19 388 IVTDLPF 394 (494)
Q Consensus 388 IVtNPPY 394 (494)
||.|--+
T Consensus 77 vi~~ag~ 83 (257)
T PRK09291 77 LLNNAGI 83 (257)
T ss_pred EEECCCc
Confidence 9998654
No 448
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=20.62 E-value=7.2e+02 Score=28.07 Aligned_cols=84 Identities=7% Similarity=-0.049 Sum_probs=49.1
Q ss_pred CCCCCEEEEEcCCcChHHHHHHhc--CCCCeEEEEeCCHHHHHHHHHHHHhccCC-CC--cccceeeeeecccccc-C--
Q psy19 309 PIPGDVFLDPMCGGGTIPVECSLS--YPHTFFVCGDINEKLVLKTQANVLHNSGN-LN--RELKVSPLVCNVRQLC-F-- 380 (494)
Q Consensus 309 ~~~g~~VLDP~CGSGtilIEAA~~--~~~~~v~G~Did~~al~~Ar~Nl~~~g~~-~~--~~~~i~~~~~Da~~l~-~-- 380 (494)
.+.|.+||=.| |+|.++..++.. -.+..|++++.+...+.....++...++. .+ ...++.++.+|+.+.. +
T Consensus 77 ~~~gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~ 155 (576)
T PLN03209 77 TKDEDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP 155 (576)
T ss_pred cCCCCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence 34666666555 466676655433 23678999999887766555544321110 00 1124678888887652 1
Q ss_pred CCCCeeEEEEcCC
Q psy19 381 KPACVDGIVTDLP 393 (494)
Q Consensus 381 ~~~~~D~IVtNPP 393 (494)
.-+.+|+||++.-
T Consensus 156 aLggiDiVVn~AG 168 (576)
T PLN03209 156 ALGNASVVICCIG 168 (576)
T ss_pred HhcCCCEEEEccc
Confidence 1146899999854
No 449
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.57 E-value=7e+02 Score=23.26 Aligned_cols=74 Identities=11% Similarity=0.053 Sum_probs=45.1
Q ss_pred CCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C--------
Q psy19 312 GDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F-------- 380 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~-------- 380 (494)
+.+|+=.|++ |.++..++..+ .+..|++.+.++.....+...+...+ .+.++.+|+.+.. .
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~Dl~~~~~~~~~~~~~~ 76 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG-------NIHYVVGDVSSTESARNVIEKAA 76 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------CeEEEECCCCCHHHHHHHHHHHH
Confidence 5678888874 66666655442 36789999999877665544443211 2456677776431 0
Q ss_pred -CCCCeeEEEEcCC
Q psy19 381 -KPACVDGIVTDLP 393 (494)
Q Consensus 381 -~~~~~D~IVtNPP 393 (494)
.-+.+|.++.+..
T Consensus 77 ~~~~~id~ii~~ag 90 (238)
T PRK05786 77 KVLNAIDGLVVTVG 90 (238)
T ss_pred HHhCCCCEEEEcCC
Confidence 0135788888764
No 450
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.27 E-value=8.1e+02 Score=23.88 Aligned_cols=78 Identities=17% Similarity=0.108 Sum_probs=42.7
Q ss_pred CCCEEEEEcCCc-ChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-C------
Q psy19 311 PGDVFLDPMCGG-GTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-F------ 380 (494)
Q Consensus 311 ~g~~VLDP~CGS-GtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-~------ 380 (494)
.+.++|=.|+|+ +.|+.+.|..+ .++.|+..+.+...-+.+ .-+.... ..+.++..|+.+.. .
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~-~~~~~~~------~~~~~~~~Dl~~~~~v~~~~~~ 77 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV-EEFAAQL------GSDIVLPCDVAEDASIDAMFAE 77 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHH-HHHHhcc------CCceEeecCCCCHHHHHHHHHH
Confidence 356777788876 37776655543 366787777764322222 2222111 11235566765531 0
Q ss_pred ---CCCCeeEEEEcCCCc
Q psy19 381 ---KPACVDGIVTDLPFG 395 (494)
Q Consensus 381 ---~~~~~D~IVtNPPYG 395 (494)
.-+.+|++|.|.-++
T Consensus 78 ~~~~~g~iD~linnAg~~ 95 (262)
T PRK07984 78 LGKVWPKFDGFVHSIGFA 95 (262)
T ss_pred HHhhcCCCCEEEECCccC
Confidence 114689999998643
No 451
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=20.08 E-value=5.4e+02 Score=24.22 Aligned_cols=77 Identities=16% Similarity=0.191 Sum_probs=47.9
Q ss_pred CCEEEEEcCCcChHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHhccCCCCcccceeeeeecccccc-----C----
Q psy19 312 GDVFLDPMCGGGTIPVECSLSY--PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLC-----F---- 380 (494)
Q Consensus 312 g~~VLDP~CGSGtilIEAA~~~--~~~~v~G~Did~~al~~Ar~Nl~~~g~~~~~~~~i~~~~~Da~~l~-----~---- 380 (494)
+.++|=.| |+|.++.+.+..+ .+..|++++.++.....+...+...+ .++.++.+|+.+.. +
T Consensus 3 ~~~ilItG-as~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~ 75 (250)
T TIGR03206 3 DKTAIVTG-GGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG------GNAQAFACDITDRDSVDTAVAAAE 75 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC------CcEEEEEcCCCCHHHHHHHHHHHH
Confidence 34555555 4667776665442 35689999999887776666655332 23567777776531 0
Q ss_pred -CCCCeeEEEEcCCCc
Q psy19 381 -KPACVDGIVTDLPFG 395 (494)
Q Consensus 381 -~~~~~D~IVtNPPYG 395 (494)
..+.+|++|.+..+.
T Consensus 76 ~~~~~~d~vi~~ag~~ 91 (250)
T TIGR03206 76 QALGPVDVLVNNAGWD 91 (250)
T ss_pred HHcCCCCEEEECCCCC
Confidence 013589999998653
Done!