Your job contains 1 sequence.
>psy19
MDLHKLVSTAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKD
IEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEI
DWKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNV
QIEKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERA
FGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIA
YNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSG
NLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVR
PQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLFDYAIHG
LKEKHKGKPFPPRK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy19
(494 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-030131-9745 - symbol:thumpd3 "THUMP domain ... 546 1.1e-66 2
MGI|MGI:1277973 - symbol:Thumpd3 "THUMP domain containing... 537 1.1e-64 2
UNIPROTKB|F1N027 - symbol:THUMPD3 "THUMP domain-containin... 656 2.3e-64 1
UNIPROTKB|Q2T9W2 - symbol:THUMPD3 "THUMP domain-containin... 655 2.9e-64 1
RGD|1560852 - symbol:Thumpd3 "THUMP domain containing 3" ... 525 3.7e-64 2
UNIPROTKB|F1P5S9 - symbol:THUMPD3 "Uncharacterized protei... 645 3.3e-63 1
UNIPROTKB|E2R6J3 - symbol:E2R6J3 "Uncharacterized protein... 644 4.2e-63 1
UNIPROTKB|Q9BV44 - symbol:THUMPD3 "THUMP domain-containin... 642 6.9e-63 1
UNIPROTKB|E2R3N7 - symbol:THUMPD3 "Uncharacterized protei... 637 2.3e-62 1
UNIPROTKB|F6XPR6 - symbol:F6XPR6 "Uncharacterized protein... 507 1.4e-48 1
UNIPROTKB|F1SR31 - symbol:LOC100517782 "Uncharacterized p... 465 3.9e-44 1
UNIPROTKB|H7C3J3 - symbol:THUMPD3 "THUMP domain-containin... 253 5.0e-39 2
WB|WBGene00010846 - symbol:M04B2.2 species:6239 "Caenorha... 403 1.5e-37 1
UNIPROTKB|H7C0R6 - symbol:THUMPD3 "THUMP domain-containin... 364 2.0e-33 1
UNIPROTKB|E1B8U2 - symbol:THUMPD2 "Uncharacterized protei... 276 1.7e-21 1
UNIPROTKB|Q9BTF0 - symbol:THUMPD2 "THUMP domain-containin... 260 1.2e-19 1
UNIPROTKB|E2QUZ6 - symbol:THUMPD2 "Uncharacterized protei... 257 2.7e-19 1
UNIPROTKB|F1S4U6 - symbol:THUMPD2 "Uncharacterized protei... 246 4.9e-18 1
UNIPROTKB|D4A475 - symbol:Thumpd2 "Protein Thumpd2" speci... 246 5.3e-18 1
MGI|MGI:1919417 - symbol:Thumpd2 "THUMP domain containing... 244 9.3e-18 1
UNIPROTKB|E1BZ71 - symbol:THUMPD2 "Uncharacterized protei... 226 4.9e-16 1
UNIPROTKB|Q57880 - symbol:trm14 "tRNA (guanine(6)-N2)-met... 158 4.6e-12 2
ZFIN|ZDB-GENE-090428-2 - symbol:thumpd2 "THUMP domain con... 178 1.5e-10 1
UNIPROTKB|Q81SR2 - symbol:BAS1468 "Uncharacterized protei... 108 1.7e-05 3
TIGR_CMR|BA_1584 - symbol:BA_1584 "conserved hypothetical... 108 1.7e-05 3
UNIPROTKB|Q8EFW4 - symbol:rlmL "Ribosomal RNA large subun... 87 0.00047 2
TIGR_CMR|SO_1851 - symbol:SO_1851 "conserved hypothetical... 87 0.00047 2
>ZFIN|ZDB-GENE-030131-9745 [details] [associations]
symbol:thumpd3 "THUMP domain containing 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004114 Pfam:PF02926 PROSITE:PS51165 SMART:SM00981
Pfam:PF01170 ZFIN:ZDB-GENE-030131-9745 GO:GO:0003723
InterPro:IPR000241 PROSITE:PS01261 GeneTree:ENSGT00530000063557
EMBL:CR847536 IPI:IPI00494603 Ensembl:ENSDART00000135959
ArrayExpress:F1QMS0 Bgee:F1QMS0 Uniprot:F1QMS0
Length = 482
Score = 546 (197.3 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
Identities = 130/358 (36%), Positives = 194/358 (54%)
Query: 148 KYNDILRHKKSIRNEINIKKESSCETE----PQVNNVQIEKGDLQNQELKEI-----DIN 198
K N+ +R KK R N K CE P +E+ L+N E E+ D++
Sbjct: 109 KLNNSIRKKKGRRKRPNPTKSDQCENVSAKCPDTVPSDLEEL-LENCETLEVTENQADVS 167
Query: 199 SMCSSQNQKTNFTNPEEN-----LLKFRVTCNRVG-KHTVTSMESERAFGGKLNDTYFWL 252
+ +++ + P++ LKFRVTC+R G KH TS ++ R FGG + + + W
Sbjct: 168 PNLENDSEEDKPSEPQDQDSELMPLKFRVTCSRAGDKHCFTSNDAARDFGGAVQEFFQWK 227
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPG 312
D+ +D+++ L I NE VG+ +T SLHRRNI F TTL+ T+AY M+RL P
Sbjct: 228 ADMTKFDVEVLLNIHNNEVVVGIALTVESLHRRNITHFGPTTLRSTLAYGMLRLCKPQVS 287
Query: 313 DVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLV 372
DV +DPMCG G IP+E ++ + ++FF+ GD N V ++ N+ H S L
Sbjct: 288 DVIVDPMCGTGAIPLEGAMEWQNSFFIAGDNNGTAVSRSVNNIKHILKKTQDGGSPSGLP 347
Query: 373 CNVRQ--LCFKP---ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAI 427
++ Q LC P + VD I+TD+PFGKRVGS+ N+ LY L L E+ ++ +P G+A
Sbjct: 348 LDIVQWDLCNLPMRSSSVDIIITDMPFGKRVGSRKKNWELYPLCLREMARVCKPGTGKAA 407
Query: 428 LLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLFDYAIHGLKEKH 485
LLT D+K +AL LWK + +N+ G+ + VF+L RT +F + E H
Sbjct: 408 LLTQDKKCFTKALLQMGGLWKKLHTVWVNVGGLHAGVFVLKRTNVIFGISSEDKTEPH 465
Score = 150 (57.9 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
Identities = 30/83 (36%), Positives = 51/83 (61%)
Query: 11 QSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGI 70
Q ++ +TI ATV TGFE EE QEK G + + K+ GR++F+I + +V L+ +
Sbjct: 7 QDTDQTVTIGATVPTGFELTAAEEVQEKLGANARVSKNRGRIYFDITTDKLIEVHHLKSL 66
Query: 71 DNILFIIATFENFGFSNKGTEED 93
DN+ ++ +E++ F K T+E+
Sbjct: 67 DNLFVVVKEYEDYQF--KATKEE 87
>MGI|MGI:1277973 [details] [associations]
symbol:Thumpd3 "THUMP domain containing 3" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008168 "methyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0032259
"methylation" evidence=IEA] InterPro:IPR004114 Pfam:PF02926
PROSITE:PS51165 SMART:SM00981 Pfam:PF01170 MGI:MGI:1277973
GO:GO:0003723 GO:GO:0008168 eggNOG:COG0116 InterPro:IPR000241
PROSITE:PS01261 GeneTree:ENSGT00530000063557 CTD:25917
HOGENOM:HOG000007488 HOVERGEN:HBG094039 OrthoDB:EOG44MXS7
OMA:RISKDRG EMBL:U83176 EMBL:AK017246 EMBL:AK142140 EMBL:BC002024
EMBL:BC012688 EMBL:BC046800 IPI:IPI00129075 IPI:IPI00808335
IPI:IPI00808495 RefSeq:NP_032214.1 UniGene:Mm.781
ProteinModelPortal:P97770 SMR:P97770 PhosphoSite:P97770
PaxDb:P97770 PRIDE:P97770 Ensembl:ENSMUST00000032398 GeneID:14911
KEGG:mmu:14911 UCSC:uc009dek.1 UCSC:uc009del.1 InParanoid:P97770
NextBio:287197 Bgee:P97770 CleanEx:MM_THUMPD3 Genevestigator:P97770
GermOnline:ENSMUSG00000030264 Uniprot:P97770
Length = 505
Score = 537 (194.1 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
Identities = 117/305 (38%), Positives = 174/305 (57%)
Query: 196 DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFGGKLNDTYFWLVD 254
D+ S C + ++ E + KFRVTCNR G KH TS E+ R FGG + + + W D
Sbjct: 205 DVLSSCKDETGQSLREETEPQVQKFRVTCNRAGEKHCFTSNEAARDFGGAIQEYFKWKAD 264
Query: 255 LDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDV 314
+ ++D+++ L I NE V + +T+ SLHRRNI F TTL+ T+AY M+RL P P DV
Sbjct: 265 MTNFDVEVLLNIHDNEVIVAIALTEESLHRRNITHFGPTTLRSTLAYGMLRLCEPKPTDV 324
Query: 315 FLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANV---LHNS----GNLNRELK 367
+DPMCG G IP+E + + H + + GD N V + N+ L S G L
Sbjct: 325 IVDPMCGTGAIPIEGATEWSHCYHIAGDNNPLAVNRAANNISSLLTKSQIKDGKTTWGLP 384
Query: 368 VSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAI 427
+ + ++ L + A VD IVTD+PFGKR+GSK N+ LY L E+ ++ RP GRA+
Sbjct: 385 IDAVQWDICNLPLRTASVDIIVTDMPFGKRMGSKKRNWNLYPACLREMSRVCRPGTGRAV 444
Query: 428 LLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLFDYAIHGLKEKHKG 487
LLT D+K +AL +W+ + +N+ G+ + V++L RTA F +H ++ +G
Sbjct: 445 LLTQDKKCFTKALSGMGHVWRKVHVVWVNIGGLHAAVYLLKRTAQAF---VHP-SDQDEG 500
Query: 488 KPFPP 492
+ PP
Sbjct: 501 RD-PP 504
Score = 140 (54.3 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
Identities = 28/84 (33%), Positives = 51/84 (60%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE E +EK + K G+++F+I ++ + +V LR
Sbjct: 33 SESEHLQVTIGATVPTGFEQTAAGEVREKLKSACRISKDRGKIYFDIAVESLAQVHCLRS 92
Query: 70 IDNILFIIATFENFGFSNKGTEED 93
+DN+ ++ F+++ F K T+E+
Sbjct: 93 VDNLFVVVQEFKDYQF--KDTKEE 114
>UNIPROTKB|F1N027 [details] [associations]
symbol:THUMPD3 "THUMP domain-containing protein 3"
species:9913 "Bos taurus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004114 Pfam:PF02926 PROSITE:PS51165 SMART:SM00981
Pfam:PF01170 GO:GO:0003723 InterPro:IPR000241 PROSITE:PS01261
GeneTree:ENSGT00530000063557 IPI:IPI00689062 UniGene:Bt.22029
OMA:RISKDRG EMBL:DAAA02053763 Ensembl:ENSBTAT00000004047
Uniprot:F1N027
Length = 506
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 161/499 (32%), Positives = 261/499 (52%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE +E +EK G + K G+++F+I + + +V LR
Sbjct: 32 SESEHLQVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDISVDSLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESXXXXXXXXXVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ KD + ++ W ++IW
Sbjct: 92 VDNLFVVVQEFKDYQF--KETKEEV-LKD--------------FEELAGKLPWSDPLKIW 134
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQN 189
K T + + N N + + R + ++K+ E V++ QI +N
Sbjct: 135 KINTCFKKKKTKR-RKLNP-NSSKQKIDNGRGDTTVEKDVKKELTNSVSDSQISDY-YEN 191
Query: 190 QELKEI------DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFG 242
+KE D + C + ++ + + +LKFRVTCNR G KH +S E+ R FG
Sbjct: 192 PAIKEQVSTLIGDGLTSCKDETEENSKEEADPEVLKFRVTCNRAGEKHCFSSNEAARDFG 251
Query: 243 GKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYN 302
G + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY
Sbjct: 252 GAVQDYFKWKADMTNFDVEVLLNIHDNEVVVGIALTEESLHRRNITHFGPTTLRSTLAYG 311
Query: 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN---- 358
M+RL +P P D+ +DPMCG G IP+E + + + + + GD N L + AN + +
Sbjct: 312 MLRLCAPQPTDIIVDPMCGTGAIPIEGATEWSNCYHIAGD-NNPLAVNRAANNISSLLTK 370
Query: 359 ----SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIE 414
G L L + + ++ L + VD IVTD+PFGKR+GSK N+ LY L E
Sbjct: 371 IQVKEGKLPLGLPIDTIQWDICNLPLRTGSVDIIVTDMPFGKRMGSKKRNWNLYPACLRE 430
Query: 415 IGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
+ ++ RP GRA+LLT D+K +AL LW+ + +N+ G+ + V++L RT F
Sbjct: 431 MSRVCRPGTGRAVLLTQDKKCFAKALSGMGHLWRKVHTVWVNIGGLHAAVYLLKRTPQSF 490
Query: 475 DYAIHGLKEKHKGKPFPPR 493
+H +E + P R
Sbjct: 491 ---VHPSEEDGERCPCTQR 506
>UNIPROTKB|Q2T9W2 [details] [associations]
symbol:THUMPD3 "THUMP domain-containing protein 3"
species:9913 "Bos taurus" [GO:0008168 "methyltransferase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004114 Pfam:PF02926 PROSITE:PS51165 SMART:SM00981
Pfam:PF01170 GO:GO:0003723 GO:GO:0008168 eggNOG:COG0116
InterPro:IPR000241 PROSITE:PS01261 EMBL:BC111239 EMBL:BT025397
IPI:IPI00689062 RefSeq:NP_001033151.1 UniGene:Bt.22029
ProteinModelPortal:Q2T9W2 PRIDE:Q2T9W2 GeneID:508940
KEGG:bta:508940 CTD:25917 HOGENOM:HOG000007488 HOVERGEN:HBG094039
InParanoid:Q2T9W2 OrthoDB:EOG44MXS7 NextBio:20868748 Uniprot:Q2T9W2
Length = 506
Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
Identities = 161/499 (32%), Positives = 261/499 (52%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE +E +EK G + K G+++F+I + + +V LR
Sbjct: 32 SESEHLQVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDITVDSLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESXXXXXXXXXVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ KD + ++ W ++IW
Sbjct: 92 VDNLFVVVQEFKDYQF--KETKEEV-LKD--------------FEELAGKLPWSDPLKIW 134
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQN 189
K T + + N N + + R + ++K+ E V++ QI +N
Sbjct: 135 KINTCFKKKKTKR-RKLNP-NSSKQKIDNGRGDTTVEKDVKKELTNSVSDSQISDY-YEN 191
Query: 190 QELKEI------DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFG 242
+KE D + C + ++ + + +LKFRVTCNR G KH +S E+ R FG
Sbjct: 192 PAIKEQVSTLIGDGLTSCKDETEENSKEEADPEVLKFRVTCNRAGEKHCFSSNEAARDFG 251
Query: 243 GKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYN 302
G + D + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY
Sbjct: 252 GAVQDYFKWKADMTNFDVEVLLNIHDNEVVVGIALTEESLHRRNITHFGPTTLRSTLAYG 311
Query: 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN---- 358
M+RL +P P D+ +DPMCG G IP+E + + + + + GD N L + AN + +
Sbjct: 312 MLRLCAPQPTDIIVDPMCGTGAIPIEGATEWSNCYHIAGD-NNPLAVNRAANNISSLLTK 370
Query: 359 ----SGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIE 414
G L L + + ++ L + VD IVTD+PFGKR+GSK N+ LY L E
Sbjct: 371 IQVKEGKLPLGLPIDTIQWDICNLPLRTGSVDIIVTDMPFGKRMGSKKRNWNLYPACLRE 430
Query: 415 IGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
+ ++ RP GRA+LLT D+K +AL LW+ + +N+ G+ + V++L RT F
Sbjct: 431 MSRVCRPGTGRAVLLTQDKKCFAKALSGMGHLWRKVHTVWVNIGGLHAAVYLLKRTPQSF 490
Query: 475 DYAIHGLKEKHKGKPFPPR 493
+H +E + P R
Sbjct: 491 ---VHPSEEDGERCPCTQR 506
>RGD|1560852 [details] [associations]
symbol:Thumpd3 "THUMP domain containing 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004114 Pfam:PF02926 PROSITE:PS51165 SMART:SM00981
Pfam:PF01170 RGD:1560852 GO:GO:0003723 EMBL:CH473957
InterPro:IPR000241 PROSITE:PS01261 GeneTree:ENSGT00530000063557
CTD:25917 OrthoDB:EOG44MXS7 OMA:RISKDRG IPI:IPI00191430
RefSeq:NP_001164017.1 RefSeq:NP_001164018.1 RefSeq:NP_001164019.1
UniGene:Rn.203804 Ensembl:ENSRNOT00000009464 GeneID:500288
KEGG:rno:500288 UCSC:RGD:1560852 NextBio:705713 Uniprot:D3ZSV7
Length = 504
Score = 525 (189.9 bits), Expect = 3.7e-64, Sum P(2) = 3.7e-64
Identities = 120/337 (35%), Positives = 187/337 (55%)
Query: 166 KKESSCETEPQVNNVQIEKGDLQNQELKEI--DINSMCSSQNQKTNFTNPEENLLKFRVT 223
KK +S +P + + + +E+ + ++ + +N ++ E + KFRVT
Sbjct: 174 KKLASGAADPHI--LDYYENPAIKEEISTLIGEVLASGEDENGQSLREEAEPQVQKFRVT 231
Query: 224 CNRVG-KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSL 282
CNR G KH TS E+ R FGG + + + W D+ ++D+++ L I NE V + +T+ SL
Sbjct: 232 CNRAGEKHCFTSNEAARGFGGAVQEYFKWKADMTNFDVEVLLNIHNNEVIVAIALTEESL 291
Query: 283 HRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGD 342
HRRNI F TTL+ T+AY M+RL P P DV +DPMCG G IP+E + + H + + GD
Sbjct: 292 HRRNITHFGPTTLRSTLAYGMLRLCEPKPTDVIVDPMCGTGAIPIEGATEWSHCYHIAGD 351
Query: 343 INEKLVLKTQANV---LHNS----GNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFG 395
N V + N+ L S G + L + + ++ L + A VD IVTD+PFG
Sbjct: 352 NNPLAVNRAANNISSLLTKSQIKDGKTSWGLPIDAVQWDICNLPLRTASVDIIVTDMPFG 411
Query: 396 KRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKI 455
KR+GSK N+ LY L E+ ++ RP+ GRA+LLT D+K +AL +W+ + +
Sbjct: 412 KRMGSKKRNWNLYPACLREMSRVCRPRTGRAVLLTQDKKCFTKALSGMGHVWRKVHTVWV 471
Query: 456 NMSGMKSFVFILNRTADLFDYAIHGLKEKHKGKPFPP 492
N+ G+ + V++L RT F +H ++ GK PP
Sbjct: 472 NIGGLHAAVYLLKRTPQDF---VHP-SDQDGGKD-PP 503
Score = 147 (56.8 bits), Expect = 3.7e-64, Sum P(2) = 3.7e-64
Identities = 28/84 (33%), Positives = 52/84 (61%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ Q+TI ATV TGFE +E +EK + K G+++F+I ++ + +V LR
Sbjct: 32 SESEHLQVTIGATVPTGFEQTAADEVREKLKSSCRISKDRGKIYFDIAVESLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEED 93
+DN+ ++ F+++ F K T+E+
Sbjct: 92 VDNLFVVVEEFKDYQF--KATKEE 113
>UNIPROTKB|F1P5S9 [details] [associations]
symbol:THUMPD3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004114 Pfam:PF02926 PROSITE:PS51165 SMART:SM00981
Pfam:PF01170 GO:GO:0003723 InterPro:IPR000241 PROSITE:PS01261
GeneTree:ENSGT00530000063557 OMA:RISKDRG EMBL:AADN02014518
IPI:IPI00814299 Ensembl:ENSGALT00000013674 Uniprot:F1P5S9
Length = 454
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 155/464 (33%), Positives = 246/464 (53%)
Query: 19 IEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIA 78
I ATV TGFE E QEK G + + G+++F + + + +V LR +DN+ ++
Sbjct: 1 IGATVPTGFEVTAAAEVQEKLGSASRISRDRGKIYFEVPARSLPEVHRLRSVDNLFVVVE 60
Query: 79 TFENFGFSNKGTEEDSGQKDESXXXXXXXXXVATIQNKVLEIDWKKYMEIWKQITNYNGV 138
F+++ F K T+ED+ KD +++ V ++ W ++IW+ N
Sbjct: 61 EFKDYQF--KETKEDA-LKD--------------LEDLVKKLPWADPLKIWE----LNNS 99
Query: 139 LYPSIEQFNKYN-DILRHKKSIRNEINIKKESSC---ETEPQVNNVQIEKGDLQNQELKE 194
L + K N K+ + + +K+ + + N E Q+ E +
Sbjct: 100 LKKKKTKRKKQNLQRTASKEKLDDGGEEEKDHRAAGGQEDCAPNTAGAEPAADQSAEEMQ 159
Query: 195 IDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFGGKLNDTYFWLV 253
+ +S ++ N + +LKFRVTCNR G KH+ TS E+ R FGG + + + W
Sbjct: 160 GEASSGAETKAGDDNKDEGDAKVLKFRVTCNRAGDKHSFTSNEAARDFGGAVQEHFQWKA 219
Query: 254 DLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGD 313
D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY M+RL P P D
Sbjct: 220 DMTNFDVEVLLNIHNNEVVVGIALTEESLHRRNITHFGPTTLRSTLAYGMLRLCDPQPTD 279
Query: 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN-SGNLNRELKVS--- 369
+ +DPMCG G IP+E ++ +P + + GD N + V + +N+ N N+E S
Sbjct: 280 IIVDPMCGTGAIPIEGAMEWPGCYHIAGDNNPQAVKRAASNICSLLKKNENKESSASLGA 339
Query: 370 PLVCNVRQLCFKP---ACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRA 426
PL +C P VD IVTD+PFGKR+GSK N+ LY L+E+G+I P GRA
Sbjct: 340 PLDIIQWDICNLPLRTGSVDVIVTDMPFGKRIGSKKKNWDLYPACLMEMGRICTPGTGRA 399
Query: 427 ILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRT 470
+LLT D+K +AL +W+ + +N+ G+ + V++L RT
Sbjct: 400 VLLTQDKKCFAKALSRLGHIWRKNHTVWVNVGGLHAAVYLLKRT 443
>UNIPROTKB|E2R6J3 [details] [associations]
symbol:E2R6J3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004114 Pfam:PF02926 PROSITE:PS51165 SMART:SM00981
Pfam:PF01170 GO:GO:0003723 InterPro:IPR000241 PROSITE:PS01261
ProteinModelPortal:E2R6J3 Ensembl:ENSCAFT00000012854 Uniprot:E2R6J3
Length = 508
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 157/498 (31%), Positives = 266/498 (53%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S Q+TI ATV TGFE +E +EK G + K G+++F+I ++ + +V LR
Sbjct: 32 SESQHLQVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDISVESLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESXXXXXXXXXVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ KD + ++ W +++W
Sbjct: 92 VDNLFVVVKEFKDYPF--KETKEEV-LKD--------------FEELAGKLPWSDPLKVW 134
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDL-- 187
K T++ ++ N+ + K+ N K + + + +NN ++ L
Sbjct: 135 KINTSFKKKKTKR-KKINQNSS----KEKTNNGQGDKTDERDDKKGFINNT-LDSHILDY 188
Query: 188 -QNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESE 238
+N +KE +++++ C + +++ + LLKFRVTCNR G KH +S E+
Sbjct: 189 YENPAIKE-EVSTLVGDDLASCKDEKDESSKEETQPELLKFRVTCNRAGEKHCFSSNEAA 247
Query: 239 RAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPT 298
R FGG + D + W D+ ++D+++ L I E VG+ +T+ SLHRRNI F TTL+ T
Sbjct: 248 RDFGGAIQDYFKWKADMTNFDVEVLLNIHDKEIVVGIALTEESLHRRNITHFGPTTLRST 307
Query: 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANV--- 355
+AY M+RL +P P D+ +DPMCG GTIP+E + + + + + GD N V + N+
Sbjct: 308 LAYGMLRLCAPQPTDIIVDPMCGTGTIPIEGATEWSNCYHIAGDNNPLAVNRAANNISSL 367
Query: 356 LHNS----GNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLF 411
L S G ++ L + + ++ L + VD IVTD+PFGKR+GSK N+ LY
Sbjct: 368 LTKSQIKEGKVSWGLPIDAVQWDICNLPLRTGSVDIIVTDMPFGKRMGSKKRNWNLYPAC 427
Query: 412 LIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTA 471
L E+ ++ RP GRA LLT D+K +AL +W+ + +N+ G+ + V++L RT
Sbjct: 428 LREMSRVCRPGTGRAALLTQDKKCFAKALSGMGHVWRKIHTVWVNIGGLHAAVYLLKRTP 487
Query: 472 DLFDYAIHGLKEKHKGKP 489
F IH ++ + +P
Sbjct: 488 QAF---IHPSEQDGEKRP 502
>UNIPROTKB|Q9BV44 [details] [associations]
symbol:THUMPD3 "THUMP domain-containing protein 3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008168 "methyltransferase activity" evidence=IEA]
InterPro:IPR004114 Pfam:PF02926 PROSITE:PS51165 SMART:SM00981
Pfam:PF01170 GO:GO:0003723 GO:GO:0008168 eggNOG:COG0116
InterPro:IPR000241 PROSITE:PS01261 CTD:25917 HOGENOM:HOG000007488
HOVERGEN:HBG094039 OrthoDB:EOG44MXS7 EMBL:AK001680 EMBL:AK023263
EMBL:BC001622 EMBL:BC010421 EMBL:AL117483 IPI:IPI00306127
PIR:T17266 RefSeq:NP_001107564.1 RefSeq:NP_056268.2
UniGene:Hs.443081 ProteinModelPortal:Q9BV44 SMR:Q9BV44
IntAct:Q9BV44 PhosphoSite:Q9BV44 DMDM:74733286 PaxDb:Q9BV44
PeptideAtlas:Q9BV44 PRIDE:Q9BV44 DNASU:25917
Ensembl:ENST00000345094 Ensembl:ENST00000452837
Ensembl:ENST00000515662 GeneID:25917 KEGG:hsa:25917 UCSC:uc003brn.4
GeneCards:GC03P009408 HGNC:HGNC:24493 HPA:HPA036170
neXtProt:NX_Q9BV44 PharmGKB:PA134969445 InParanoid:Q9BV44
OMA:RISKDRG PhylomeDB:Q9BV44 GenomeRNAi:25917 NextBio:47433
ArrayExpress:Q9BV44 Bgee:Q9BV44 CleanEx:HS_THUMPD3
Genevestigator:Q9BV44 GermOnline:ENSG00000134077 Uniprot:Q9BV44
Length = 507
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 161/500 (32%), Positives = 266/500 (53%)
Query: 1 MDLH---KLVSTAQSD-----EKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRV 52
++LH K V +SD E +TI ATV TGFE +E +EK G + + G++
Sbjct: 14 VNLHENQKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDRGKI 73
Query: 53 FFNIDLKDIEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESXXXXXXXXXVAT 112
+F I ++ + +V LR +DN+ ++ F+++ F K T+E+ KD
Sbjct: 74 YFVISVESLAQVHCLRSVDNLFVVVQEFQDYQF--KQTKEEV-LKD-------------- 116
Query: 113 IQNKVLEIDWKKYMEIWKQITNYNG--VLYPSIEQFNKYNDILRHKKSIR-NEINIKKES 169
++ ++ W +++WK ++ I Q N + + + + ++ ++ N+KKE
Sbjct: 117 FEDLAGKLPWSNPLKVWKINASFKKKKAKRKKINQ-NSSKEKINNGQEVKIDQRNVKKEF 175
Query: 170 SCETEPQVNNVQIEKGDLQNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRV 222
T +++ ++ +N +KE D++++ C + +++ E +LKFRV
Sbjct: 176 ---TSHALDSHILDY--YENPAIKE-DVSTLIGDDLASCKDETDESSKEETEPQVLKFRV 229
Query: 223 TCNRVG-KHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTS 281
TCNR G KH TS E+ R FGG + D + W D+ ++D+++ L I NE VG+ +T+ S
Sbjct: 230 TCNRAGEKHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEES 289
Query: 282 LHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCG 341
LHRRNI F TTL+ T+AY M+RL P+P D+ +DPMCG G IP+E + + F + G
Sbjct: 290 LHRRNITHFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAG 349
Query: 342 DINEKLVLKTQANV---LHNS----GNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPF 394
D N V + N+ L S G + L + + ++ L + VD IVTDLPF
Sbjct: 350 DNNPLAVNRAANNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPF 409
Query: 395 GKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIK 454
GKR+GSK N+ LY L E+ ++ P GRA+LLT D K +AL +W+ +
Sbjct: 410 GKRMGSKKRNWNLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVW 469
Query: 455 INMSGMKSFVFILNRTADLF 474
+N+ G+++ V++L RT F
Sbjct: 470 VNVGGLRAAVYVLIRTPQAF 489
>UNIPROTKB|E2R3N7 [details] [associations]
symbol:THUMPD3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004114 Pfam:PF02926 PROSITE:PS51165 SMART:SM00981
Pfam:PF01170 GO:GO:0003723 InterPro:IPR000241 PROSITE:PS01261
GeneTree:ENSGT00530000063557 CTD:25917 OMA:RISKDRG
EMBL:AAEX03012082 RefSeq:NP_001239102.1 UniGene:Cfa.2075
UniGene:Cfa.45587 Ensembl:ENSCAFT00000035640 GeneID:610222
KEGG:cfa:610222 NextBio:20895788 Uniprot:E2R3N7
Length = 503
Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
Identities = 156/499 (31%), Positives = 265/499 (53%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S Q+TI ATV TGFE +E +EK G + K G+++F+I ++ + +V LR
Sbjct: 32 SESQHLQVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDISVESLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESXXXXXXXXXVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ KD + ++ W +++W
Sbjct: 92 VDNLFVVVKEFKDYPF--KETKEEV-LKD--------------FEELAGKLPWSDPLKVW 134
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDL-- 187
K T++ ++ N+ + K+ N K + + + +NN ++ L
Sbjct: 135 KINTSFKKKKTKR-KKINQNSS----KEKTNNGQGDKTDERDDKKGFINNT-LDSHILDY 188
Query: 188 -QNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESE 238
+N +KE +++++ C + +++ + LLKFRVTCNR G KH +S E+
Sbjct: 189 YENPAIKE-EVSTLVGDDLASCKDEKDESSKEETQPELLKFRVTCNRAGEKHCFSSNEAA 247
Query: 239 RAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPT 298
R FGG + D + W D+ ++D+++ L I E VG+ +T+ SLHRRNI F TTL+ T
Sbjct: 248 RDFGGAIQDYFKWKADMTNFDVEVLLNIHDKEIVVGIALTEESLHRRNITHFGPTTLRST 307
Query: 299 IAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANV--- 355
+AY M+RL +P P D+ +DPMCG G IP+E + + + + + GD N V + N+
Sbjct: 308 LAYGMLRLCAPQPTDIIVDPMCGTGAIPIEGATEWSNCYHIAGDNNPLAVNRAANNISSL 367
Query: 356 LHNS----GNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLF 411
L S G ++ L + + ++ L + VD IVTD+PFGKR+GSK N+ LY
Sbjct: 368 LTKSQIKEGKVSWGLPIDAVQWDICNLPLRTGSVDIIVTDMPFGKRMGSKKRNWNLYPAC 427
Query: 412 LIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTA 471
L E+ ++ RP GRA LLT D+K +AL +W+ + +N+ G+ + V++L RT
Sbjct: 428 LREMSRVCRPGTGRAALLTQDKKCFAKALSGMGHVWRKVHTVWVNIGGLHAAVYLLKRTP 487
Query: 472 DLFDYAIHGLKEKHKGKPF 490
F IH ++ + P+
Sbjct: 488 QAF---IHPSEQDGERTPW 503
>UNIPROTKB|F6XPR6 [details] [associations]
symbol:F6XPR6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004114 Pfam:PF02926 PROSITE:PS51165 SMART:SM00981
Pfam:PF01170 GO:GO:0003723 InterPro:IPR000241 PROSITE:PS01261
GeneTree:ENSGT00530000063557 EMBL:AAEX03011456
Ensembl:ENSCAFT00000012854 OMA:THEPESK Uniprot:F6XPR6
Length = 411
Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 130/412 (31%), Positives = 216/412 (52%)
Query: 61 IEKVKELRGIDNILFIIATFENFGFSNKGTEEDSGQKDESXXXXXXXXXVATIQNKVLEI 120
+ +V LR +DN+ ++ F+++ F K T+E+ KD + ++
Sbjct: 13 VPEVHCLRSVDNLFVVVKEFKDYPF--KETKEEV-LKD--------------FEELAGKL 55
Query: 121 DWKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNV 180
W +++WK T++ ++ N+ + K+ N K + + + +NN
Sbjct: 56 PWSDPLKVWKINTSFKKKKTKR-KKINQNSS----KEKTNNGQGDKTDERDDKKGFINNT 110
Query: 181 QIEKGDL---QNQELKEIDINSM-------CSSQNQKTNFTNPEENLLKFRVTCNRVG-K 229
++ L +N +KE +++++ C + +++ + LLKFRVTCNR G K
Sbjct: 111 -LDSHILDYYENPAIKE-EVSTLVGDDLASCKDEKDESSKEETQPELLKFRVTCNRAGEK 168
Query: 230 HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVE 289
H +S E+ R FGG + D + W D+ ++D+++ L I E VG+ +T+ SLHRRNI
Sbjct: 169 HCFSSNEAARDFGGAIQDYFKWKADMTNFDVEVLLNIHDKEIVVGIALTEESLHRRNITH 228
Query: 290 FNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVL 349
F TTL+ T+AY M+RL +P P D+ +DPMCG GTIP+E + + + + + GD N V
Sbjct: 229 FGPTTLRSTLAYGMLRLCAPQPTDIIVDPMCGTGTIPIEGATEWSNCYHIAGDNNPLAVN 288
Query: 350 KTQANV---LHNS----GNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKS 402
+ N+ L S G ++ L + + ++ L + VD IVTD+PFGKR+GSK
Sbjct: 289 RAANNISSLLTKSQIKEGKVSWGLPIDAVQWDICNLPLRTGSVDIIVTDMPFGKRMGSKK 348
Query: 403 NNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIK 454
N+ LY L E+ ++ RP GRA LLT D+K +AL +W+ K K
Sbjct: 349 RNWNLYPACLREMSRVCRPGTGRAALLTQDKKCFAKALSGMGHVWRKNKMGK 400
>UNIPROTKB|F1SR31 [details] [associations]
symbol:LOC100517782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004114 Pfam:PF02926 PROSITE:PS51165 SMART:SM00981
Pfam:PF01170 GO:GO:0003723 InterPro:IPR000241 PROSITE:PS01261
GeneTree:ENSGT00530000063557 OMA:RISKDRG EMBL:CU929960
Ensembl:ENSSSCT00000012632 Uniprot:F1SR31
Length = 406
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 112/353 (31%), Positives = 187/353 (52%)
Query: 10 AQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRG 69
++S+ ++TI ATV TGFE +E +EK G + K G+++F+I ++ + +V LR
Sbjct: 32 SESEHLRVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDISVESLAQVHCLRS 91
Query: 70 IDNILFIIATFENFGFSNKGTEEDSGQKDESXXXXXXXXXVATIQNKVLEIDWKKYMEIW 129
+DN+ ++ F+++ F K T+E+ KD + ++ W ++IW
Sbjct: 92 VDNLFVVVQEFKDYQF--KETKEEV-LKD--------------FEELAGKLPWSDPLKIW 134
Query: 130 KQITNYNG--VLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCET-EPQV----NNVQI 182
K T + I Q I + +E ++KKE + + Q+ N+ I
Sbjct: 135 KINTRFKKRKTKRKKISQNTSKEKIDNGQGDKTDEKDVKKEITNNVLDSQILDYYENLAI 194
Query: 183 EKGDLQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAF 241
++ + L D+ S C + +++ + +LKFRVTCNR G KH +S E R F
Sbjct: 195 KE---EISTLVGDDLVS-CKDETDESSKEETDPEVLKFRVTCNRAGEKHCFSSNEVARDF 250
Query: 242 GGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAY 301
GG + + + W D+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY
Sbjct: 251 GGAVQEYFKWKADMTNFDVEVLLNIHDNEVVVGIALTEESLHRRNITHFGPTTLRSTLAY 310
Query: 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN 354
M+RL +P P D+ +DPMCG G IP+E + + + + + GD N L + AN
Sbjct: 311 GMLRLCAPQPTDIIIDPMCGTGAIPIEGATEWSNCYHIAGD-NNPLAVNRAAN 362
>UNIPROTKB|H7C3J3 [details] [associations]
symbol:THUMPD3 "THUMP domain-containing protein 3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004114 Pfam:PF02926 PROSITE:PS51165 SMART:SM00981
Pfam:PF01170 GO:GO:0003723 InterPro:IPR000241 HGNC:HGNC:24493
EMBL:AC018506 EMBL:AC026191 ProteinModelPortal:H7C3J3
Ensembl:ENST00000416603 Uniprot:H7C3J3
Length = 269
Score = 253 (94.1 bits), Expect = 5.0e-39, Sum P(2) = 5.0e-39
Identities = 53/127 (41%), Positives = 76/127 (59%)
Query: 196 DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFGGKLNDTYFWLVD 254
D+ S C + +++ E +LKFRVTCNR G KH TS E+ R FGG + D + W D
Sbjct: 37 DLAS-CKDETDESSKEETEPQVLKFRVTCNRAGEKHCFTSNEAARDFGGAVQDYFKWKAD 95
Query: 255 LDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLAS-PIPGD 313
+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY M+ S +P D
Sbjct: 96 MTNFDVEVLLNIHDNEVIVGIALTEESLHRRNITHFGPTTLRSTLAYGMLSKPSWGLPID 155
Query: 314 VFLDPMC 320
+C
Sbjct: 156 AVQWDIC 162
Score = 192 (72.6 bits), Expect = 5.0e-39, Sum P(2) = 5.0e-39
Identities = 42/103 (40%), Positives = 61/103 (59%)
Query: 372 VCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431
+CN L + VD IVTDLPFGKR+GSK N+ LY L E+ ++ P GRA+LLT
Sbjct: 161 ICN---LPLRTGSVDIIVTDLPFGKRMGSKKRNWNLYPACLREMSRVCTPTTGRAVLLTQ 217
Query: 432 DRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF 474
D K +AL +W+ + +N+ G+++ V++L RT F
Sbjct: 218 DTKCFTKALSGMRHVWRKVDTVWVNVGGLRAAVYVLIRTPQAF 260
>WB|WBGene00010846 [details] [associations]
symbol:M04B2.2 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008168
"methyltransferase activity" evidence=IEA] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR004114
Pfam:PF02926 PROSITE:PS51165 SMART:SM00981 Pfam:PF01170
GO:GO:0009792 GO:GO:0003723 EMBL:Z77667 eggNOG:COG0116
InterPro:IPR000241 GeneTree:ENSGT00530000063557
HOGENOM:HOG000007488 PIR:T23698 RefSeq:NP_502174.2
UniGene:Cel.12579 ProteinModelPortal:Q21503 SMR:Q21503 PaxDb:Q21503
EnsemblMetazoa:M04B2.2 GeneID:178075 KEGG:cel:CELE_M04B2.2
UCSC:M04B2.2 CTD:178075 WormBase:M04B2.2 InParanoid:Q21503
OMA:TMRSTMC NextBio:899610 Uniprot:Q21503
Length = 391
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 99/349 (28%), Positives = 187/349 (53%)
Query: 130 KQITNYNGVLYPSIEQFNKYNDILRHK--KSIRNEINIKKESSCETEPQVNNVQIEKGDL 187
+ I N V Y E K +++ + K+I+++I S C + + Q+ +G+
Sbjct: 55 RSIDNLYMVFYE--ETIEKLSEMQKEDALKTIQSQI-----SFCNWKLAIEAYQLARGNA 107
Query: 188 QNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGK---HTVTSMESERAFGGK 244
N ++I + + + + ++ ++ KFRVTC R G+ H +SM++ FG +
Sbjct: 108 INGGSEKI-LKQIQQFKKDRI-YSEVTDDSPKFRVTCKRCGEKEIHKFSSMDAASKFGAE 165
Query: 245 LNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMV 304
+N+ + W + ++DI++ L+I N V + + + SL +RNI + TT++ T+ + M+
Sbjct: 166 INNAFGWKCSVKEFDIEVVLRIDRNNMTVMMALNEESLFKRNICAYGPTTMRSTMCHCML 225
Query: 305 RLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNR 364
+LA PGD+ +D MCGGG+IP+E ++S+ ++ F+ GD +E + + N NS +
Sbjct: 226 QLADIKPGDIIVDAMCGGGSIPIEGAISWKNSLFLGGDNHEMAMSRCLQNWSANSSSSRS 285
Query: 365 ELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIG 424
L + L + +D +VTDLPFGK++GS ++N LLY L E +++R G
Sbjct: 286 NCDF--LTWDATNLPLRDNSIDALVTDLPFGKKIGSTTDNRLLYPRLLAEWKRVLRKG-G 342
Query: 425 RAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSF-VFILNRTAD 472
R +L+T D++ L + + W+ +N+ G+ + ++NR +D
Sbjct: 343 RLVLMTHDKRSLENSFLKDRSSWQTDASHVVNVGGLSCLCICMINRKSD 391
>UNIPROTKB|H7C0R6 [details] [associations]
symbol:THUMPD3 "THUMP domain-containing protein 3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004114 Pfam:PF02926 PROSITE:PS51165 SMART:SM00981
Pfam:PF01170 GO:GO:0003723 InterPro:IPR000241 PROSITE:PS01261
HGNC:HGNC:24493 EMBL:AC018506 EMBL:AC026191
ProteinModelPortal:H7C0R6 Ensembl:ENST00000441127 Uniprot:H7C0R6
Length = 232
Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 70/160 (43%), Positives = 99/160 (61%)
Query: 196 DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG-KHTVTSMESERAFGGKLNDTYFWLVD 254
D+ S C + +++ E +LKFRVTCNR G KH TS E+ R FGG + D + W D
Sbjct: 61 DLAS-CKDETDESSKEETEPQVLKFRVTCNRAGEKHCFTSNEAARDFGGAVQDYFKWKAD 119
Query: 255 LDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDV 314
+ ++D+++ L I NE VG+ +T+ SLHRRNI F TTL+ T+AY M+RL P+P D+
Sbjct: 120 MTNFDVEVLLNIHDNEVIVGIALTEESLHRRNITHFGPTTLRSTLAYGMLRLCDPLPYDI 179
Query: 315 FLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN 354
+DPMCG G IP+E + + F + GD N L + AN
Sbjct: 180 IVDPMCGTGAIPIEGATEWSDCFHIAGD-NNPLAVNRAAN 218
>UNIPROTKB|E1B8U2 [details] [associations]
symbol:THUMPD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004114
Pfam:PF02926 PROSITE:PS51165 SMART:SM00981 Pfam:PF01170
GO:GO:0003723 InterPro:IPR000241 CTD:80745 OMA:RAYIKTA
GeneTree:ENSGT00530000063557 EMBL:DAAA02030615 EMBL:DAAA02030616
EMBL:DAAA02030617 EMBL:DAAA02030618 IPI:IPI00689313
RefSeq:NP_001179151.1 UniGene:Bt.57653 ProteinModelPortal:E1B8U2
Ensembl:ENSBTAT00000006195 GeneID:509460 KEGG:bta:509460
NextBio:20868975 Uniprot:E1B8U2
Length = 501
Score = 276 (102.2 bits), Expect = 1.7e-21, P = 1.7e-21
Identities = 108/422 (25%), Positives = 201/422 (47%)
Query: 22 TVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIATFE 81
T G E ++ E +E+ + S G+VFF D+ +K+L+ + + +I
Sbjct: 21 TAGRGLEPFLMREVRERLAATQVEYIS-GKVFFTT-CSDLNMLKQLKSAERLFLLIKKQL 78
Query: 82 NFGFSN--KGTEEDSGQKDESXXXXXXXXXVATIQNKVLEIDWKKYMEIWKQITNYNGVL 139
F S+ KG + Q+ + ++ +N +LE+D KK +++++ N
Sbjct: 79 PFPVSSVSKGKILNELQRLINDDPESWLNAISIWKN-LLELDAKK-----EKLSHKNA-- 130
Query: 140 YPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDL--QNQELKEI-- 195
P + + +DI K +++ C+ E Q+ +E+G+ + ++ +++
Sbjct: 131 NPLKRKVGE-DDITAKKLKTEQIQELQETKECQLEKQIEEKILEQGNFITEGEKFQKLQD 189
Query: 196 DINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLV 253
D+ ++NQ TN T FRV+C G T+T+ E R G L + W
Sbjct: 190 DVTEAVDTRNQ-TNLT--------FRVSCRCSGAVAKTLTAQEVGRVIGIALMKQFGWKA 240
Query: 254 DLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGD 313
DL + +++I + + + +G+PV + L R ++ L+ TIA+ M LA G
Sbjct: 241 DLRNPNLEIFIHLSDVYSVLGIPVFRVPLACRAYIK--TAGLRSTIAWAMASLAEIKAGA 298
Query: 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373
V LDPMCG GTI +E + +PH ++V D+++ + N+ + L R+ K+ L
Sbjct: 299 VVLDPMCGLGTILLEAAKEWPHVYYVGADVSDSQLSGAYDNL--RAAGL-RD-KIELLQV 354
Query: 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433
+V +L VD I++D+PFGK+ + + R+ L E+ +++R G +LL S+
Sbjct: 355 SVIELPLPSESVDIIISDIPFGKKFKLGKD---IKRM-LQEMERVLRVG-GTIVLLLSED 409
Query: 434 KH 435
H
Sbjct: 410 HH 411
>UNIPROTKB|Q9BTF0 [details] [associations]
symbol:THUMPD2 "THUMP domain-containing protein 2"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008168 "methyltransferase activity" evidence=IEA]
InterPro:IPR004114 Pfam:PF02926 PROSITE:PS51165 SMART:SM00981
Pfam:PF01170 EMBL:CH471053 GO:GO:0003723 GO:GO:0008168
eggNOG:COG0116 InterPro:IPR000241 EMBL:AC007246 EMBL:AF380576
EMBL:AF380566 EMBL:AF380567 EMBL:AF380568 EMBL:AF380569
EMBL:AF380570 EMBL:AF380571 EMBL:AF380573 EMBL:AF380574
EMBL:AF380575 EMBL:AK292002 EMBL:AK093580 EMBL:AC007253
EMBL:BC004163 EMBL:BC013299 IPI:IPI00892786 IPI:IPI01015863
RefSeq:NP_079540.2 UniGene:Hs.468254 ProteinModelPortal:Q9BTF0
SMR:Q9BTF0 STRING:Q9BTF0 PhosphoSite:Q9BTF0 DMDM:61248558
PRIDE:Q9BTF0 DNASU:80745 Ensembl:ENST00000260619
Ensembl:ENST00000378727 Ensembl:ENST00000505747 GeneID:80745
KEGG:hsa:80745 UCSC:uc002rru.2 CTD:80745 GeneCards:GC02M039875
H-InvDB:HIX0002000 HGNC:HGNC:14890 HPA:HPA043042 MIM:611751
neXtProt:NX_Q9BTF0 PharmGKB:PA134976355 HOGENOM:HOG000013141
HOVERGEN:HBG061192 InParanoid:Q9BTF0 OMA:RAYIKTA GenomeRNAi:80745
NextBio:71094 ArrayExpress:Q9BTF0 Bgee:Q9BTF0 CleanEx:HS_THUMPD2
Genevestigator:Q9BTF0 GermOnline:ENSG00000138050 Uniprot:Q9BTF0
Length = 503
Score = 260 (96.6 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 108/423 (25%), Positives = 193/423 (45%)
Query: 22 TVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIAT-F 80
T G E V+ E + + + S G+VFF D+ +K+L+ + + +I F
Sbjct: 21 TAGRGLEPFVMREVRARLAATQVEYIS-GKVFFTT-CSDLNMLKKLKSAERLFLLIKKQF 78
Query: 81 ENFGFS-NKGTEEDSGQKDESXXXXXXXXXVATIQNKVLEIDWKKYMEIWKQITNYNGVL 139
S +KG + Q+ + ++ +N +LE+D KK K + L
Sbjct: 79 PLIISSVSKGKIFNEMQRLINEDPGSWLNAISIWKN-LLELDAKKE----KLSQRDDNQL 133
Query: 140 YPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDL--QNQELKEIDI 197
+ + N+I+ K I I++ C+ E Q+ +E+ D ++++ +E +
Sbjct: 134 KRKVGE----NEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRDFTTKSEKFQEEEF 189
Query: 198 NSMCSSQNQKTNFTNPEENLLKFRVTCN---RVGKHTVTSMESERAFGGKLNDTYFWLVD 254
+ +K T+ +N L FRV+C +GK T+ E + G + + W D
Sbjct: 190 QN----DIEKAIDTH-NQNDLTFRVSCRCSGTIGK-AFTAQEVGKVIGIAIMKHFGWKAD 243
Query: 255 LDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDV 314
L + ++I + + + VG+PV + SL R ++ L+ TIA+ M LA G
Sbjct: 244 LRNPQLEIFIHLNDIYSVVGIPVFRVSLASRAYIK--TAGLRSTIAWAMASLADIKAGAF 301
Query: 315 FLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCN 374
LDPMCG GTI +E + +P ++V D+++ +L T N+ + L E K+ L +
Sbjct: 302 VLDPMCGLGTILLEAAKEWPDVYYVGADVSDSQLLGTWDNL--KAAGL--EDKIELLKIS 357
Query: 375 VRQLCFKPACVDGIVTDLPFGKR--VGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSD 432
V +L VD I++D+PFGK+ +G + L ++ +G G +LL S+
Sbjct: 358 VIELPLPSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVG-------GTIVLLLSE 410
Query: 433 RKH 435
H
Sbjct: 411 DHH 413
>UNIPROTKB|E2QUZ6 [details] [associations]
symbol:THUMPD2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004114 Pfam:PF02926 PROSITE:PS51165 SMART:SM00981
Pfam:PF01170 GO:GO:0003723 InterPro:IPR000241 CTD:80745 OMA:RAYIKTA
GeneTree:ENSGT00530000063557 EMBL:AAEX03010878 RefSeq:XP_540159.2
ProteinModelPortal:E2QUZ6 Ensembl:ENSCAFT00000010448 GeneID:483044
KEGG:cfa:483044 Uniprot:E2QUZ6
Length = 502
Score = 257 (95.5 bits), Expect = 2.7e-19, P = 2.7e-19
Identities = 111/425 (26%), Positives = 196/425 (46%)
Query: 22 TVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIAT-F 80
T G E ++ E + + + S G+VFF D+ +K+L+ + + +I F
Sbjct: 21 TAGRGLEPFLMREVRARLAATQVEYIS-GKVFFTT-CSDLNMLKKLKSAERLFLLIKKQF 78
Query: 81 E-NFGFSNKGTEEDSGQKDESXXXXXXXXXVATIQNKVLEIDWKKYMEIWKQITNYNGVL 139
N NKG + Q + ++ +N +LE+D KK ++ ++ N L
Sbjct: 79 PLNVPSVNKGKIFNEMQNLVNDDPESWLNAISIWKN-LLELDTKKG-KLSQRDAN---PL 133
Query: 140 YPSIEQFNKYNDILRHKKSIRNEINIKKES-SCETEPQVNNVQIEKGDL----QNQELKE 194
+E+ NDI+ KK ++ +ES C+ E ++ E+ L ++QE +
Sbjct: 134 KRKVEE----NDIINPKKLKTEQMQELQESRECQLEKEIEEETPEQDFLTKREKSQEAFQ 189
Query: 195 IDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWL 252
D+ +QNQK L FRV+C G T T+ E R G + + W
Sbjct: 190 NDVVKAGDTQNQKD---------LTFRVSCRCSGAIAKTFTAQEVGRVIGIAVMKQFGWK 240
Query: 253 VDLDDYDIDINLQIRYNEAY--VGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPI 310
DL + +++I + + N+ Y VG+PV + L R ++ L+ TIA+ M LA
Sbjct: 241 ADLRNPNLEIFIHL--NDVYSVVGIPVFRVPLASRAYIK--TAGLRSTIAWAMASLAEIK 296
Query: 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370
G LDPMCG GTI +E + +P ++V D ++ +L N+ + L ++++
Sbjct: 297 AGAFVLDPMCGLGTILLEAAKEWPDVYYVGADASDSQLLGACDNL--KAAGLKDKIEL-- 352
Query: 371 LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLT 430
L +V +L VD I++D+PFGK+ + + + L E+ +++ G +LL
Sbjct: 353 LKVSVIELPLPSESVDIIISDIPFGKKFKLRKD----IKSILQEMERVLHVG-GTIVLLL 407
Query: 431 SDRKH 435
S+ H
Sbjct: 408 SEDHH 412
>UNIPROTKB|F1S4U6 [details] [associations]
symbol:THUMPD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004114
Pfam:PF02926 PROSITE:PS51165 SMART:SM00981 Pfam:PF01170
GO:GO:0003723 InterPro:IPR000241 CTD:80745 OMA:RAYIKTA
GeneTree:ENSGT00530000063557 EMBL:CU463885 RefSeq:XP_003125255.3
UniGene:Ssc.6519 Ensembl:ENSSSCT00000009272 GeneID:100517336
KEGG:ssc:100517336 Uniprot:F1S4U6
Length = 504
Score = 246 (91.7 bits), Expect = 4.9e-18, P = 4.9e-18
Identities = 109/423 (25%), Positives = 196/423 (46%)
Query: 22 TVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIATFE 81
T G E +++E + + + S G+VFF D+ +K L+ + + +I
Sbjct: 21 TASRGLEPFLLQEVRARLRATQVEYIS-GKVFFTTCC-DLNMLKRLKSAERLFLLIKKQF 78
Query: 82 NFGFSN--KGTEEDSGQKDESXXXXXXXXXVATIQNKVLEIDWKKYMEIWKQITNYNGVL 139
F S+ KG + +K + ++ +N +LE D K+ K + + L
Sbjct: 79 PFNVSSVSKGQIFNEMEKLINDDPENWLNTLSIWKN-LLEFDAKEEELSQKDVNS----L 133
Query: 140 YPSIEQFNKYNDILRHKKSIR-NEINIKKESSCETEPQVNNVQIEKGDL--QNQELKEID 196
+ + + N I + K+ + EI+ KE C+ E Q +E+G+ Q +EL+E +
Sbjct: 134 KRKVGEDD--NTIAKKVKTEQVQEIHENKE--CQREKQTEET-LEQGNCITQREELQEEE 188
Query: 197 I-NSMCSSQNQKTNFTNPEENLLKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLV 253
+ N + + T + L FRV+C G T T+ E R G L + W V
Sbjct: 189 LQNDAVEAVDTPTKGKH-----LTFRVSCRCSGAIAKTFTTQEIGRVIGIALKKQFGWKV 243
Query: 254 DLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGD 313
DL + +++I + + + VG+PV + L R ++ L+ TIA+ M LA G
Sbjct: 244 DLRNPNLEIFIHLSDIYSVVGIPVFRVPLASRAYIK--TAGLRSTIAWAMASLAEIKAGA 301
Query: 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373
LDPMCG GTI +E + +P ++V D+++ +L N+ + L ++++ L
Sbjct: 302 FVLDPMCGLGTILLEAAKEWPDVYYVGADVSDSQLLGASDNL--KAAGLKDKIEL--LKG 357
Query: 374 NVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR 433
+V +L VD I++D+PFGK+ K + + L E+ +++ +G I+L
Sbjct: 358 SVIELPLPSESVDIIISDIPFGKKF--KLGKDI--KSILQEMERVLH--VGGTIVLLLSG 411
Query: 434 KHL 436
HL
Sbjct: 412 DHL 414
>UNIPROTKB|D4A475 [details] [associations]
symbol:Thumpd2 "Protein Thumpd2" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004114 Pfam:PF02926 PROSITE:PS51165 SMART:SM00981
Pfam:PF01170 GO:GO:0003723 InterPro:IPR000241
GeneTree:ENSGT00530000063557 OrthoDB:EOG4Q84XB IPI:IPI00360067
ProteinModelPortal:D4A475 Ensembl:ENSRNOT00000011000 RGD:1306878
ArrayExpress:D4A475 Uniprot:D4A475
Length = 519
Score = 246 (91.7 bits), Expect = 5.3e-18, P = 5.3e-18
Identities = 89/325 (27%), Positives = 156/325 (48%)
Query: 122 WKKYMEIWKQITNY--NG--VLYPSIEQFNKY---NDILRHKKSIRNEINIKKESSCETE 174
W K + +W+++ ++ NG V + ND + KK E+ + +S E++
Sbjct: 75 WLKAISLWRKLLDHDTNGEKVSQGDANPLKRKAGENDSITPKKLKLEEMQVVDKSHGESQ 134
Query: 175 PQVNNVQIEKGDL--QNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVG--KH 230
+E+G+ + EL+E ++ +S+ + +PE+ L FR++C G +
Sbjct: 135 QDQPQGPLEQGETLARTDELQEQRLHR--ASETA-AHAQSPED--LTFRISCRCSGSIRK 189
Query: 231 TVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEF 290
VT E+ R G L + W DL D++I + + + VG+P+ + L R ++
Sbjct: 190 VVTGQEAGRVAGLALMRQFGWKADLRKPDLEIFMHLSDAYSVVGIPLLRVPLASRTYLQ- 248
Query: 291 NITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLK 350
L+ TIA+ M +A G + LDPMCG GTI VE + +P F+V D+++ +L
Sbjct: 249 -TAGLRSTIAWAMASIAEIKAGALVLDPMCGLGTILVEAAEEWPDVFYVGADVSDSQLLG 307
Query: 351 TQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRL 410
N L +G +R + L +V L VD I++D+PFGK+ K + +
Sbjct: 308 ACDN-LKAAGLAHR---IELLKGSVADLPLPAQSVDVIISDIPFGKKF--KLGKDI--KS 359
Query: 411 FLIEIGKIVRPQIGRAILLTSDRKH 435
L E+ +++ G ILL S+ H
Sbjct: 360 ILQEMERVLHVD-GVMILLLSEDHH 383
>MGI|MGI:1919417 [details] [associations]
symbol:Thumpd2 "THUMP domain containing 2" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008168 "methyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0032259
"methylation" evidence=IEA] InterPro:IPR004114 Pfam:PF02926
PROSITE:PS51165 SMART:SM00981 Pfam:PF01170 MGI:MGI:1919417
GO:GO:0003723 GO:GO:0008168 eggNOG:COG1041 InterPro:IPR000241
EMBL:AC165966 CTD:80745 HOGENOM:HOG000013141 HOVERGEN:HBG061192
OMA:RAYIKTA EMBL:AK012806 IPI:IPI00662204 RefSeq:NP_082414.1
UniGene:Mm.273257 ProteinModelPortal:Q9CZB3 SMR:Q9CZB3
PhosphoSite:Q9CZB3 PaxDb:Q9CZB3 PRIDE:Q9CZB3
Ensembl:ENSMUST00000025093 GeneID:72167 KEGG:mmu:72167
UCSC:uc008drp.2 GeneTree:ENSGT00530000063557 OrthoDB:EOG4Q84XB
ChiTaRS:THUMPD2 NextBio:335601 Bgee:Q9CZB3 CleanEx:MM_THUMPD2
Genevestigator:Q9CZB3 GermOnline:ENSMUSG00000024246 Uniprot:Q9CZB3
Length = 528
Score = 244 (91.0 bits), Expect = 9.3e-18, P = 9.3e-18
Identities = 102/421 (24%), Positives = 191/421 (45%)
Query: 22 TVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIATFE 81
T G E ++ E + + + S G+VFF D+ +K+L+ + + +I
Sbjct: 21 TAGRGLEPFLMREVRARLEATQVEYIS-GKVFFTT-CSDLPSMKKLKSAERLFVLIKKQL 78
Query: 82 NFGFSN--KGTEEDSGQKDESXXXXXXXXXVATIQNKVLEIDWKKYMEIWKQITNYNGVL 139
S+ KG + Q+ + ++ + K+LE D K+ ++ ++ N
Sbjct: 79 PIAVSSLHKGKILNEMQRFVNDDPGSWLEAIS-LWKKLLEHDPKRE-KVSQRDAN----- 131
Query: 140 YPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGD-LQNQELKEIDIN 198
P + + I+ K + + + K+ E ++ E+G+ + EL++ +N
Sbjct: 132 -PLKRKAGENETIIAKKLKVEEKQEVAKDHGESQEDKLLQGSPEQGEAVTRTELQDHRLN 190
Query: 199 SMCSSQNQKTNFTNPEENLLKFRVTCNRVG--KHTVTSMESERAFGGKLNDTYFWLVDLD 256
S +K +E+L FRV+C G + +T E+ R G L + W DL
Sbjct: 191 ST----TEKAADAQDQEDLT-FRVSCRCTGNVRKVITGQEAGRVIGLALMRQFGWKADLR 245
Query: 257 DYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFL 316
+ +I+I + + + VG+P+ + L R ++ L+ TIA+ M +A G + L
Sbjct: 246 NPNIEIFMHLSDAYSVVGIPLLRMPLASRTYIQ--TAGLRSTIAWAMASIAEIKAGALVL 303
Query: 317 DPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVR 376
DPMCG GTI VE + +P F++ D+++ +L N L +G +R + L +V
Sbjct: 304 DPMCGLGTILVEAAEEWPDVFYMGADMSDAQLLGACDN-LKAAGLTDR---IELLKSSVT 359
Query: 377 QLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDR-KH 435
L D I++D+PFGK+ K + + L E+ +++R +LL+ D +H
Sbjct: 360 DLPLPSQSTDVIISDIPFGKKF--KLGKDI--KSILQEMERVLRVGGAMVLLLSEDHHRH 415
Query: 436 L 436
L
Sbjct: 416 L 416
>UNIPROTKB|E1BZ71 [details] [associations]
symbol:THUMPD2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004114 Pfam:PF02926 PROSITE:PS51165 SMART:SM00981
Pfam:PF01170 GO:GO:0003723 InterPro:IPR000241
GeneTree:ENSGT00530000063557 EMBL:AADN02012194 EMBL:AADN02012195
EMBL:AADN02012196 EMBL:AADN02041285 EMBL:AADN02041286
EMBL:AADN02041287 EMBL:AADN02041288 EMBL:AADN02041289
EMBL:AADN02062829 IPI:IPI00594634 ProteinModelPortal:E1BZ71
Ensembl:ENSGALT00000014845 Uniprot:E1BZ71
Length = 417
Score = 226 (84.6 bits), Expect = 4.9e-16, P = 4.9e-16
Identities = 79/298 (26%), Positives = 140/298 (46%)
Query: 155 HKKSIRNEINI-KKESSCETEPQVNNVQIEKGDLQNQELKEIDINSMCSSQNQ------- 206
HK+ EINI K E ++ + + + G +N + E + + C ++++
Sbjct: 44 HKRKPEEEINIASKRQKTEQVREIASEECQAGAGENCVVSEEESDQDCQAESKASLEGPT 103
Query: 207 KTNFTNPEENL---LKFRVTCNRVGK--HTVTSMESERAFGGKLNDTYFWLVDLDDYDID 261
+++ P EN FRV+C G +TS E RA G L + W DL D++
Sbjct: 104 RSSIEKPIENEKQNFSFRVSCRCSGAIAKILTSQEIGRAVGIALRKQFGWQADLRAPDLE 163
Query: 262 INLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCG 321
I L + + VG+P+ + L R ++ L+ T+A+ M LA G LDPMCG
Sbjct: 164 IFLHLNDIHSVVGIPLFRLPLANREYIK--TAGLRSTVAWAMASLAEISVGAFVLDPMCG 221
Query: 322 GGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFK 381
GTI +E + +P + D ++ + N+ + L+ ++++ +V+ L
Sbjct: 222 LGTILLEAAKEWPEACYWGTDTSDSQLEGASVNI--KAAGLDDKIEL--FKASVKALPLP 277
Query: 382 PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAI--LLTSD-RKHL 436
D +++D+PFGK+ + LL + L E+ +++R +G I LL D RK +
Sbjct: 278 SESFDAVISDIPFGKKFKITKDIQLLPDI-LQEMERVLR--VGGIIVLLLNQDLRKRM 332
>UNIPROTKB|Q57880 [details] [associations]
symbol:trm14 "tRNA (guanine(6)-N2)-methyltransferase"
species:243232 "Methanocaldococcus jannaschii DSM 2661" [GO:0016423
"tRNA (guanine) methyltransferase activity" evidence=IDA]
[GO:0030488 "tRNA methylation" evidence=IDA] InterPro:IPR002052
InterPro:IPR004114 Pfam:PF02926 PROSITE:PS00092 PROSITE:PS51165
SMART:SM00981 Pfam:PF01170 GO:GO:0005737 GO:GO:0003723 EMBL:L77117
GenomeReviews:L77117_GR eggNOG:COG0116 InterPro:IPR000241
PROSITE:PS01261 GO:GO:0016423 PIR:F64354 RefSeq:NP_247412.1
ProteinModelPortal:Q57880 GeneID:1451298 KEGG:mja:MJ_0438 KO:K16318
OMA:KLYNGRI ProtClustDB:CLSK688067 Uniprot:Q57880
Length = 381
Score = 158 (60.7 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 61/214 (28%), Positives = 107/214 (50%)
Query: 134 NYNGVLYPSIEQFNKYNDI--LRHK-KSIR-NEINIKKESSCETEPQVNNVQ--IEKGD- 186
+Y L P +E+ +K N+I K K IR N+ I + P++N + IE+ +
Sbjct: 2 DYYVTLSPGLEKISK-NEIESFGGKIKEIRENKGRIFFSGDLKLIPKINYLSRTIERMNI 60
Query: 187 -LQNQELKEIDINSMCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKL 245
L +E+ I ++ + + ++T + F + R G+H TS++ R G +
Sbjct: 61 LLHREEIPNIALDDIYK-RVYNIDWTEWIKENQSFAIRPLRAGEHNFTSIDIGRVAGEAV 119
Query: 246 NDTY-----FWL-VDLDDYDIDINLQIRYNEAYVGLPVT-QTSLHRRNIVEFNITT-LKP 297
+Y L V+LD+ D+ + +++ ++E VG+ T +L +R FN L
Sbjct: 120 IKSYQRDKNIRLKVNLDEPDVIVRVEVIFDELIVGIDTTGDIALDKRGYRVFNHPAHLNA 179
Query: 298 TIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
TIA ++V L+ ++ LDPMCG GTIP+E +L
Sbjct: 180 TIASSLVYLSDWKDDEMLLDPMCGSGTIPIEGAL 213
Score = 76 (31.8 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 386 DGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSA 445
D I+ + P+G R+GSK + LY FL +I+ R I++T++ K A I
Sbjct: 301 DVIIANPPYGIRIGSKRSVKKLYDEFLSSAKEIMHGS-SRLIVITAEDKMFKDA--IAKN 357
Query: 446 LWKCRKQIKINMSGMKSFVFIL 467
++ +++ + G+ + VF L
Sbjct: 358 NFEVKEEFNVMFGGLMTRVFYL 379
>ZFIN|ZDB-GENE-090428-2 [details] [associations]
symbol:thumpd2 "THUMP domain containing 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004114 Pfam:PF02926 SMART:SM00981 Pfam:PF01170
ZFIN:ZDB-GENE-090428-2 GO:GO:0003723 InterPro:IPR000241
GeneTree:ENSGT00530000063557 EMBL:CR626962 IPI:IPI00993963
Ensembl:ENSDART00000144016 Bgee:F1R289 Uniprot:F1R289
Length = 449
Score = 178 (67.7 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 59/218 (27%), Positives = 101/218 (46%)
Query: 220 FRVTCNRVG--KHTVTSMESERAFGGKLNDTYFWLVDLDDYDID---INLQIRYNEAYVG 274
FRV+C G + R G + + W VDL + ++ +N+ + + VG
Sbjct: 159 FRVSCRCSGVIARSNNPQRLSRIIGMAIKEQLGWKVDLREPVLEHNQVNVYLSDDHCIVG 218
Query: 275 LPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLA-SPIPGDVFLDPMCGGGTIPVECSLSY 333
+P+ + L R+ ++ N L+ TIA+ M L + V LDPMCG G + +E + Y
Sbjct: 219 IPLLKHPLASRSYMKHN--GLRSTIAWAMTSLCPDELNNCVILDPMCGVGAVLLEAAQEY 276
Query: 334 PHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLP 393
+ F+ D + + K NV SG E +V L + ++ VD ++ D+P
Sbjct: 277 SNAVFLGMDTDGSQLQKAAENV-KASG---MEGRVQLLQSSALEIPLADGMVDAVLCDVP 332
Query: 394 FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTS 431
FG++ S+ L L E+ +++R G +LL S
Sbjct: 333 FGRKFSCSSDMTTALPLLLREMERVLRVG-GHLVLLLS 369
>UNIPROTKB|Q81SR2 [details] [associations]
symbol:BAS1468 "Uncharacterized protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR002052
InterPro:IPR004114 Pfam:PF02926 PROSITE:PS00092 PROSITE:PS51165
SMART:SM00981 Pfam:PF01170 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 GO:GO:0008168
InterPro:IPR000241 PROSITE:PS01261 OMA:KLYNGRI HOGENOM:HOG000040914
KO:K07444 RefSeq:NP_844033.1 RefSeq:YP_018208.1 RefSeq:YP_027737.1
ProteinModelPortal:Q81SR2 DNASU:1085769
EnsemblBacteria:EBBACT00000011372 EnsemblBacteria:EBBACT00000018504
EnsemblBacteria:EBBACT00000019504 GeneID:1085769 GeneID:2815857
GeneID:2852131 KEGG:ban:BA_1584 KEGG:bar:GBAA_1584 KEGG:bat:BAS1468
ProtClustDB:CLSK916288 BioCyc:BANT260799:GJAJ-1542-MONOMER
BioCyc:BANT261594:GJ7F-1607-MONOMER Uniprot:Q81SR2
Length = 379
Score = 108 (43.1 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 30/98 (30%), Positives = 50/98 (51%)
Query: 238 ERAFGGKLNDTY---FWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNIT 293
++A KL TY W + D I + + + A + + + LH+R V+
Sbjct: 114 KKAVVEKLKTTYKRTTWFEE-DGPLFRIEIAMLKDIATLTIDASGVGLHKRGYRVDQGEA 172
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
LK T+A ++++L + P F+DP CG GTIP+E +L
Sbjct: 173 PLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEAAL 210
Score = 57 (25.1 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRP-QIGRAILLTS 431
+VT+ P+G+R+ K+ LY+ E+G++ RP A +LTS
Sbjct: 300 VVTNPPYGERLSEKALVEQLYK----EMGQVFRPLDTWSAYVLTS 340
Score = 47 (21.6 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 16 QITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKE-LRGIDNIL 74
++T+ AT G E +V E ++ G + + S +V F D K I + LR D +
Sbjct: 3 KVTLIATAAMGIEALVAREVRD-LGYECQVENS--KVTFEADEKAICRTNLWLRTADRVK 59
Query: 75 FIIATFE 81
+ F+
Sbjct: 60 IKVGEFK 66
>TIGR_CMR|BA_1584 [details] [associations]
symbol:BA_1584 "conserved hypothetical protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR002052 InterPro:IPR004114 Pfam:PF02926 PROSITE:PS00092
PROSITE:PS51165 SMART:SM00981 Pfam:PF01170 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
GO:GO:0008168 InterPro:IPR000241 PROSITE:PS01261 OMA:KLYNGRI
HOGENOM:HOG000040914 KO:K07444 RefSeq:NP_844033.1
RefSeq:YP_018208.1 RefSeq:YP_027737.1 ProteinModelPortal:Q81SR2
DNASU:1085769 EnsemblBacteria:EBBACT00000011372
EnsemblBacteria:EBBACT00000018504 EnsemblBacteria:EBBACT00000019504
GeneID:1085769 GeneID:2815857 GeneID:2852131 KEGG:ban:BA_1584
KEGG:bar:GBAA_1584 KEGG:bat:BAS1468 ProtClustDB:CLSK916288
BioCyc:BANT260799:GJAJ-1542-MONOMER
BioCyc:BANT261594:GJ7F-1607-MONOMER Uniprot:Q81SR2
Length = 379
Score = 108 (43.1 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 30/98 (30%), Positives = 50/98 (51%)
Query: 238 ERAFGGKLNDTY---FWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNIT 293
++A KL TY W + D I + + + A + + + LH+R V+
Sbjct: 114 KKAVVEKLKTTYKRTTWFEE-DGPLFRIEIAMLKDIATLTIDASGVGLHKRGYRVDQGEA 172
Query: 294 TLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSL 331
LK T+A ++++L + P F+DP CG GTIP+E +L
Sbjct: 173 PLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEAAL 210
Score = 57 (25.1 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 388 IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRP-QIGRAILLTS 431
+VT+ P+G+R+ K+ LY+ E+G++ RP A +LTS
Sbjct: 300 VVTNPPYGERLSEKALVEQLYK----EMGQVFRPLDTWSAYVLTS 340
Score = 47 (21.6 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 16 QITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKE-LRGIDNIL 74
++T+ AT G E +V E ++ G + + S +V F D K I + LR D +
Sbjct: 3 KVTLIATAAMGIEALVAREVRD-LGYECQVENS--KVTFEADEKAICRTNLWLRTADRVK 59
Query: 75 FIIATFE 81
+ F+
Sbjct: 60 IKVGEFK 66
>UNIPROTKB|Q8EFW4 [details] [associations]
symbol:rlmL "Ribosomal RNA large subunit methyltransferase
K/L" species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01858 InterPro:IPR002052 InterPro:IPR004114
InterPro:IPR017244 InterPro:IPR019614 Pfam:PF02926 Pfam:PF10672
PIRSF:PIRSF037618 PROSITE:PS51165 SMART:SM00981 Pfam:PF01170
GO:GO:0005737 GO:GO:0003723 EMBL:AE014299 GenomeReviews:AE014299_GR
HSSP:Q5SIT4 eggNOG:COG0116 HOGENOM:HOG000218371 KO:K12297
OMA:NKRGFKM ProtClustDB:PRK11783 GO:GO:0052915 InterPro:IPR000241
PROSITE:PS01261 RefSeq:NP_717459.1 ProteinModelPortal:Q8EFW4
GeneID:1169620 KEGG:son:SO_1851 PATRIC:23523329 Uniprot:Q8EFW4
Length = 711
Score = 87 (35.7 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 26/80 (32%), Positives = 37/80 (46%)
Query: 257 DYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT----LKPTIAYNM-VRLASPIP 311
D DI ++ R + + + SLH+R + TT LK +A NM VR
Sbjct: 134 DADIKVDAHFRNGVITIAMNFSGPSLHQRG---YRSTTGEAPLKENLAANMLVRSGWKAA 190
Query: 312 GDVFLDPMCGGGTIPVECSL 331
LDP CG GT+ +E +L
Sbjct: 191 PTTLLDPFCGSGTVLIEAAL 210
Score = 82 (33.9 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 38/121 (31%), Positives = 61/121 (50%)
Query: 338 FVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG-IVTDLPFGK 396
F DI+ +LV + N N+G L EL + V N L +P +G ++T+ P+G+
Sbjct: 259 FYGSDIDSRLVALAKRNA-QNAGVL--EL-IEFNVANA--LNVEPPAAEGYLITNPPYGE 312
Query: 397 RVGSKSNNFLLYRLFLIEIGKIVRPQIG--RAILLTSDRKHLIQALHITSALWKCRKQIK 454
R+GS S LY ++G + + G + +L SD + LI AL + K KQ+K
Sbjct: 313 RLGSVSELLQLY----YQLGDKFKKEFGGWKVAMLCSDIE-LISALKL-----KADKQMK 362
Query: 455 I 455
+
Sbjct: 363 M 363
>TIGR_CMR|SO_1851 [details] [associations]
symbol:SO_1851 "conserved hypothetical protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
HAMAP:MF_01858 InterPro:IPR002052 InterPro:IPR004114
InterPro:IPR017244 InterPro:IPR019614 Pfam:PF02926 Pfam:PF10672
PIRSF:PIRSF037618 PROSITE:PS51165 SMART:SM00981 Pfam:PF01170
GO:GO:0005737 GO:GO:0003723 EMBL:AE014299 GenomeReviews:AE014299_GR
HSSP:Q5SIT4 eggNOG:COG0116 HOGENOM:HOG000218371 KO:K12297
OMA:NKRGFKM ProtClustDB:PRK11783 GO:GO:0052915 InterPro:IPR000241
PROSITE:PS01261 RefSeq:NP_717459.1 ProteinModelPortal:Q8EFW4
GeneID:1169620 KEGG:son:SO_1851 PATRIC:23523329 Uniprot:Q8EFW4
Length = 711
Score = 87 (35.7 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 26/80 (32%), Positives = 37/80 (46%)
Query: 257 DYDIDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITT----LKPTIAYNM-VRLASPIP 311
D DI ++ R + + + SLH+R + TT LK +A NM VR
Sbjct: 134 DADIKVDAHFRNGVITIAMNFSGPSLHQRG---YRSTTGEAPLKENLAANMLVRSGWKAA 190
Query: 312 GDVFLDPMCGGGTIPVECSL 331
LDP CG GT+ +E +L
Sbjct: 191 PTTLLDPFCGSGTVLIEAAL 210
Score = 82 (33.9 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 38/121 (31%), Positives = 61/121 (50%)
Query: 338 FVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG-IVTDLPFGK 396
F DI+ +LV + N N+G L EL + V N L +P +G ++T+ P+G+
Sbjct: 259 FYGSDIDSRLVALAKRNA-QNAGVL--EL-IEFNVANA--LNVEPPAAEGYLITNPPYGE 312
Query: 397 RVGSKSNNFLLYRLFLIEIGKIVRPQIG--RAILLTSDRKHLIQALHITSALWKCRKQIK 454
R+GS S LY ++G + + G + +L SD + LI AL + K KQ+K
Sbjct: 313 RLGSVSELLQLY----YQLGDKFKKEFGGWKVAMLCSDIE-LISALKL-----KADKQMK 362
Query: 455 I 455
+
Sbjct: 363 M 363
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 494 485 0.00081 119 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 616 (65 KB)
Total size of DFA: 293 KB (2153 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 42.71u 0.10s 42.81t Elapsed: 00:00:08
Total cpu time: 42.72u 0.10s 42.82t Elapsed: 00:00:08
Start: Thu Aug 15 14:23:07 2013 End: Thu Aug 15 14:23:15 2013