RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy19
(494 letters)
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 208 bits (530), Expect = 6e-63
Identities = 79/252 (31%), Positives = 115/252 (45%), Gaps = 10/252 (3%)
Query: 219 KFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVT 278
FRV R G+H TS E ER G L+ Y VDL + + + +R EA++G+ +T
Sbjct: 111 SFRVEARREGEHPFTSPEVERRVGEALHRAYGVPVDLKRPAVRVRVDVRGEEAFLGVQLT 170
Query: 279 QTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVE-CSLSYPHTF 337
+ L RR +L P +A ++RLA PG LDP G GTI +E S P +
Sbjct: 171 ERPLSRRFPKAALRGSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSP 230
Query: 338 FVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKR 397
GD++EK + + L + L+ + L + R L VD I+ + P G R
Sbjct: 231 VYAGDLDEKRLGLAREAALAS--GLSW---IRFLRADARHLPRFFPEVDRILANPPHGLR 285
Query: 398 VGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINM 457
+G K F LY FL ++ P GR LLT L +AL + R +
Sbjct: 286 LGRKEGLFHLYWDFLRGALALLPPG-GRVALLTLRPALLKRAL---PPGFALRHARVVEQ 341
Query: 458 SGMKSFVFILNR 469
G+ VF+L +
Sbjct: 342 GGVYPRVFVLEK 353
Score = 45.9 bits (109), Expect = 2e-05
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 8 STAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVK-E 66
S + +EAT G ED+++EE + + + + I + +
Sbjct: 11 SGLVPRGSHMWLEATTHPGLEDLLLEELSALYPGEGAEVD-ARKGRVRIPRAWVGEEALG 69
Query: 67 LRGIDNILFIIATFENF 83
LR +++ A
Sbjct: 70 LRLAHHLVLFRARLLLS 86
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump
domain, tRNA methyltransferase; HET: SAM; 1.95A
{Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Length = 373
Score = 177 bits (450), Expect = 4e-51
Identities = 63/258 (24%), Positives = 110/258 (42%), Gaps = 16/258 (6%)
Query: 219 KFRVTCNRVGKHTVTSMESERAFGG----KLNDTYFWLVDLDDYDIDINLQIRYNEAYVG 274
F V R G H +TS++ R G +L+ LV+LD + ++ + ++G
Sbjct: 120 TFAVRSFRKGDHNITSIDIARTVGEAIFERLSRFGTPLVNLDHPAVIFRAELIKDVFFLG 179
Query: 275 LPVT-QTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLS 332
+ T +SLH+R V + LK +IA M+ LA + G LDPMCG GTI +E +L
Sbjct: 180 IDTTGDSSLHKRPWRVYDHPAHLKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALR 238
Query: 333 YPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDL 392
+ + K ++ + N L K+ + + QL VD +++L
Sbjct: 239 RYSGEIIGIEKYRKHLIGAEMNAL----AAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294
Query: 393 PFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQ 452
P+G ++G KS LY F E+ K++ + T + I ++
Sbjct: 295 PYGLKIGKKSMIPDLYMKFFNELAKVLEK--RGVFITTEKKAI---EEAIAENGFEIIHH 349
Query: 453 IKINMSGMKSFVFILNRT 470
I G+ ++++
Sbjct: 350 RVIGHGGLMVHLYVVKLE 367
Score = 35.6 bits (82), Expect = 0.029
Identities = 18/131 (13%), Positives = 42/131 (32%), Gaps = 37/131 (28%)
Query: 21 ATVVTGFEDVVVEECQEKFGKDLLLMKSI-------GRVFFNIDLKDIEKVKE------- 66
T G ED+ E K + + GR+ + K
Sbjct: 5 LTTAQGIEDIAKREVSLLLKKLGISFQIEEKPLGIEGRLLLEAEKAYYVDEKGRKRELSI 64
Query: 67 -------LRGIDNILFIIATFENFGFSNKGTEEDSGQKDESDLLKDKLKDVATIQNKVLE 119
R + ++ IA+ + F+ +E ++ LK I++ V
Sbjct: 65 STYLNENSRLLHRVIIEIASEK---FNGIEKDE----------SEEALKR---IKDFVSS 108
Query: 120 IDWKKYMEIWK 130
+ ++++++ +
Sbjct: 109 LPVEQFVKVSE 119
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA
methyltransferase, ribosome RNA, SAH, RLML; HET: SAH
OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Length = 703
Score = 70.8 bits (174), Expect = 4e-13
Identities = 54/291 (18%), Positives = 101/291 (34%), Gaps = 65/291 (22%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
VD D DI +N+ + A + L ++ LH R I +K T+A +V + P
Sbjct: 131 VDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQP 190
Query: 312 GDVFLDPMCGGGTIPVE------------------------------------------C 329
G LDPMCG GT+ +E
Sbjct: 191 GTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARK 250
Query: 330 SLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG-- 387
L+ + F D + +++ + + N +G + + V +V Q G
Sbjct: 251 GLAEYSSHFYGSDSDARVIQRARTNA-RLAG-IGELITFE--VKDVAQ--LTNPLPKGPY 304
Query: 388 --IVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIG--RAILLTSDRKHLIQALHIT 443
++++ P+G+R+ S+ L+ +G+I++ Q G L ++ L+ L +
Sbjct: 305 GTVLSNPPYGERLDSEPALIALHS----LLGRIMKNQFGGWNLSLFSASPD-LLSCLQL- 358
Query: 444 SALWKCRKQIKINMSGMKSFVFILNRTADLFDYAIHGLKEKHKGKPFPPRK 494
+ KQ K + + D + E + + K
Sbjct: 359 ----RADKQYKAKNGPLDCVQKNYHVAESTPDSKPAMVAEDYTNRLRKNLK 405
Score = 32.3 bits (74), Expect = 0.46
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 21 ATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVK-ELRGIDNILFIIAT 79
A+ G E+++ E + + G V F D + + + R I+ +
Sbjct: 7 ASTARGLEELLKTELENLGAVE--CQVVQGGVHFKGDTRLVYQSLMWSRLASRIMLPLGE 64
Query: 80 FE 81
+
Sbjct: 65 CK 66
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170,
putative RNA methylase, PSI,MCSG, structu genomics;
1.50A {Listeria monocytogenes str}
Length = 393
Score = 68.9 bits (169), Expect = 7e-13
Identities = 46/225 (20%), Positives = 80/225 (35%), Gaps = 51/225 (22%)
Query: 251 WLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASP 309
+ + + I +E + + + LH+R + +K T+A +V L S
Sbjct: 140 GRLMETGALFKLEVSILKDEVTLTIDTSGAGLHKRGYRLAQGSAPIKETMAAALVLLTSW 199
Query: 310 IPGDVFLDPMCGGGTIPVECSL-------------------------------------S 332
P F DP+CG GTIP+E +L +
Sbjct: 200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLAN 259
Query: 333 YPHTFFVCG-DINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG-IVT 390
Y + G DI+ +L+ + N +G L + V F+ G +V
Sbjct: 260 YDQPLNIIGGDIDARLIEIAKQNA-VEAG-LGDLITFR--QLQVAD--FQTEDEYGVVVA 313
Query: 391 DLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIG-RAILLTSDRK 434
+ P+G+R+ + LYR E+G + + +LTS
Sbjct: 314 NPPYGERLEDEEAVRQLYR----EMGIVYKRMPTWSVYVLTSYEL 354
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Length = 385
Score = 68.1 bits (167), Expect = 1e-12
Identities = 52/250 (20%), Positives = 94/250 (37%), Gaps = 57/250 (22%)
Query: 253 VDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIP 311
+ D I + I ++ + + T +LH+R + N ++ T+A ++ L
Sbjct: 136 LKEDKEKYPIFVFIHKDKVTISIDTTGDALHKRGYREKANKAPIRETLAAGLIYLTPWKA 195
Query: 312 GDVFLDPMCGGGTIPVECSL-------------------------------------SYP 334
G V +DPMCG GTI +E ++
Sbjct: 196 GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNE 255
Query: 335 HTFFVCG-DINEKLVLKTQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG-IVTDL 392
F + G DI+E+ + + N +G ++ ++ + V + Q FK G I+T+
Sbjct: 256 SKFKIYGYDIDEESIDIARENA-EIAG-VDEYIEFN--VGDATQ--FKSEDEFGFIITNP 309
Query: 393 PFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIG-RAILLTSDRKHLIQALHITSALWKCRK 451
P+G+R+ K + LY+ E+G R L+TS K K
Sbjct: 310 PYGERLEDKDSVKQLYK----ELGYAFRKLKNWSYYLITSYED-FEYEFGQ-----KADK 359
Query: 452 QIKINMSGMK 461
+ K+ +K
Sbjct: 360 KRKLYNGMLK 369
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase,
transferase; HET: SAH; 1.96A {Streptococcus mutans}
Length = 384
Score = 66.2 bits (162), Expect = 6e-12
Identities = 51/293 (17%), Positives = 104/293 (35%), Gaps = 66/293 (22%)
Query: 219 KFRVTCNRVGKHTVTS-----MESERA----FGGKLNDTYFWLVDLDDYDIDINLQIRYN 269
+F V + K + + +++A + + + + I + + +
Sbjct: 92 QFPVAKAKSVKSKLHNEPSIQGITKKAIVKKLQHYFHRPDSVPLPENGPEFKIEISLLKD 151
Query: 270 EAYVGLPVTQTSLHRRNI-VEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVE 328
+A V + T SL +R E +K +A ++ L++ P F+DP CG GT +E
Sbjct: 152 QARVMIDTTGPSLFKRGYRTEKGGAPIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIE 211
Query: 329 CSL-------------------------------------SYPHTFFVCG-DINEKLVLK 350
++ Y + G D + ++V
Sbjct: 212 AAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI 271
Query: 351 TQANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDG-IVTDLPFGKRVGSKSNNFLLYR 409
+ N G L +K+ ++ FK ++G ++++ P+G+R+ +LY
Sbjct: 272 ARKNA-REVG-LEDVVKLK--QMRLQD--FKTNKINGVLISNPPYGERLLDDKAVDILYN 325
Query: 410 LFLIEIGKIVRPQIG-RAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMK 461
E+G+ P +LT+D Q K K+ K+ +K
Sbjct: 326 ----EMGETFAPLKTWSQFILTNDTD-FEQKFGR-----KADKKRKLYNGSLK 368
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.5 bits (156), Expect = 5e-11
Identities = 63/380 (16%), Positives = 117/380 (30%), Gaps = 97/380 (25%)
Query: 144 EQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQ-IEKGDLQNQELKEIDINSMCS 202
E +Y DIL E C +VQ + K L +E+ I I S
Sbjct: 13 EHQYQYKDILSV-----FEDAFVDNFDC------KDVQDMPKSILSKEEIDHI-IMS--- 57
Query: 203 SQNQKTNFTNPEENLLK-FRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVD-LDDYDI 260
+ L+ F ++ + V ++ L Y +L+ +
Sbjct: 58 --------KDAVSGTLRLFWTLLSK-QEEMV-----QKFVEEVLRINYKFLMSPIKTEQR 103
Query: 261 DINL-QIRYNEAYVGLPVTQTSLHRRN--IVEFNITTLKPTIAYNMVRLA----SPIPGD 313
++ Y E + L+ N ++N++ L+P Y +R A P
Sbjct: 104 QPSMMTRMYIE-------QRDRLYNDNQVFAKYNVSRLQP---YLKLRQALLELRPAKN- 152
Query: 314 VFLDPMCGGG--TIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH--NSGNLNRELKVS 369
V +D + G G + ++ VC K+ K + N N N
Sbjct: 153 VLIDGVLGSGKTWVALD----------VCLS--YKVQCKMDFKI-FWLNLKNCNSP---E 196
Query: 370 PLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGK----IVR----P 421
++ +++L ++ +D ++ S L RL + + ++
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 422 QIGRA------ILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNRTADLF- 474
+ A ILLT+ K + L + I ++ S + L
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAAT-----TTHISLDHH---SMTLTPDEVKSLLL 308
Query: 475 ---DYAIHGL-KEKHKGKPF 490
D L +E P
Sbjct: 309 KYLDCRPQDLPREVLTTNPR 328
Score = 61.0 bits (147), Expect = 5e-10
Identities = 69/532 (12%), Positives = 144/532 (27%), Gaps = 172/532 (32%)
Query: 26 GFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFIIATFENFGF 85
++D++ ++ F + D KD++ + I
Sbjct: 17 QYKDIL-SVFEDAFVDNF-------------DCKDVQD--MPKSI--------------L 46
Query: 86 SNKGTEEDSGQKDES-------DLLKDKLKD-VATIQNKVLEIDWKKYMEIWKQITN--- 134
S + + KD L K ++ V +VL I++K M K
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 135 --------YNGVLYPSIEQFNKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGD 186
LY + F KYN + R + + ++ +
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYN-VSRLQPYL---------------------KLRQAL 144
Query: 187 LQNQELKEIDINSM--CSSQNQKTNFTNPEENLLKFRVTCNRVGK-H--TVTSMESERAF 241
L+ + K + I+ + KT + L ++V C K + + S
Sbjct: 145 LELRPAKNVLIDGVLGSG----KTWVAL--DVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 242 GGKLNDTYFWLV--DLDDYDIDINLQIRYNEAYVGL------PVTQTSL------HRRNI 287
L + + D N+++R + L + L
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 288 VE-FN------ITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVC 340
FN +TT + L++ + LD T
Sbjct: 259 WNAFNLSCKILLTTRFKQVTD---FLSAATTTHISLDHHSMTLT---------------- 299
Query: 341 GDINEKLVLKTQANVLHNS-GNLNRE-LKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRV 398
V L +L RE L +P ++ + DG+ T
Sbjct: 300 ----PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI----IAESIRDGLAT-------- 343
Query: 399 GSKSNNFLLYRLFLIEIGKIVRPQIGRAILLTSDRKHLIQAL-------HITSA----LW 447
+N+ + ++ I+ + +L ++ + + L HI + +W
Sbjct: 344 ---WDNWK--HVNCDKLTTIIESSL--NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 448 KCRKQIKINMSGMKSFV--FILNRTADLFDYAIHGL-----------KEKHK 486
+ + M + ++ + +I + H+
Sbjct: 397 FDVIKSDV-MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Score = 56.8 bits (136), Expect = 1e-08
Identities = 55/337 (16%), Positives = 106/337 (31%), Gaps = 75/337 (22%)
Query: 1 MDLH-K-LVSTAQSDEKQITIEATVVTGFEDVVVEECQEKFGKDL---LLMKSIGRVFFN 55
+L K L++T KQ+T + + ++ D LL+K + +
Sbjct: 262 FNLSCKILLTTRF---KQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLK-----YLD 312
Query: 56 IDLKDIEKVKELRGIDNILF-IIA--------TFENFGFSN----KGTEEDSGQKDESDL 102
+D+ + E+ + IIA T++N+ N E S E
Sbjct: 313 CRPQDLPR--EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 103 LKDKLKDVA------TIQNKVLEIDWKKYMEIWKQITNYNGVLYPSIEQFNKYNDILRHK 156
+ ++ I +L + IW + + ++ + + +KY+ + +
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSL-------IWFDVIKSDVMV--VVNKLHKYSLVEKQP 421
Query: 157 KSIRNEIN---IKKESSCETEPQ-----VNNVQIEKGDLQNQELKEIDINSMCS------ 202
K I ++ + E E V++ I K + + S
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 203 -SQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDID 261
+ T L FR ++ +H T+ A G LN L L Y
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKI-RHDSTAWN---ASGSILNT----LQQLKFYKPY 533
Query: 262 INLQIRYNEAYVG-----LPVTQTSLHR---RNIVEF 290
I E V LP + +L +++
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 1.90A
{Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Length = 307
Score = 54.8 bits (132), Expect = 2e-08
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 219 KFRVTCNRVGK-HTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYV---- 273
KFRVT R+ K + S+E + G + + VDL +YDI+I ++I +AY+
Sbjct: 108 KFRVTARRITKEFPLDSLEIQAKVGEYILNNENCEVDLKNYDIEIGIEIMQGKAYIYTEK 167
Query: 274 -----GLPVT 278
GLP+
Sbjct: 168 IKGWGGLPIG 177
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding
protein, RNA binding protein, tRNA modification,
4-thiouridine synthase; HET: AMP; 2.5A {Bacillus
anthracis} SCOP: c.26.2.6 d.308.1.1
Length = 413
Score = 47.6 bits (113), Expect = 6e-06
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 220 FRVTCNRVGKH-TVTSMESERAFGGKLNDTYFWL-VDLDDYDIDINLQIRYNEAYV 273
F++T +R KH + +ME GG + + + VD+ + D+++ ++IR +Y+
Sbjct: 116 FKITVHRSYKHFPMRTMELLPEIGGHILENTEDITVDVHNPDVNVRVEIRSGYSYI 171
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 3e-04
Identities = 59/356 (16%), Positives = 105/356 (29%), Gaps = 157/356 (44%)
Query: 185 GDLQNQELKEIDINSMCSSQNQKTNFTNPE-ENLLKF----RVTCNRVGKHTVTS----- 234
+ +N L+ DI+++ + Q+ + T + + L+K R+ R S
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 235 MESERA-----FGGK-LNDTYFWLVDLDDYDIDINLQIRYNEAYVGL------------- 275
+ A FGG+ D YF ++ L+ Y + Y L
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYF-----EE------LRDLY-QTYHVLVGDLIKFSAETLS 196
Query: 276 -----PVTQTSLHRR--NIVEF-NITTLKPTIAYNMVRLAS-----PI------------ 310
+ + + NI+E+ + P Y L S P+
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY----LLSIPISCPLIGVIQLAHYVVT 252
Query: 311 -------PGDVFLDPMCG----------------GGT-----------------IPVECS 330
PG++ + G + I V C
Sbjct: 253 AKLLGFTPGELR-SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY 311
Query: 331 LSYPHTFF---------------------VCG---DINEKLVLKTQANV---------LH 357
+YP+T + + + V KT +++ L
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Query: 358 NSGNLNRELKVS--P-----LVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFL 406
N + L VS P L +R+ P+ +D + +PF +R SN FL
Sbjct: 372 NGA---KNLVVSGPPQSLYGLNLTLRKAK-APSGLD--QSRIPFSERKLKFSNRFL 421
Score = 30.4 bits (68), Expect = 1.8
Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 35/141 (24%)
Query: 48 SIGRVFFNIDLKDIEKVKELRGIDNILFIIATFENFGFSNKG----TEEDSGQKDESDLL 103
S+ V ++ + +V RG+ + + + G SN G + L
Sbjct: 1772 SLADVM---SIESLVEVVFYRGM--TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL 1826
Query: 104 KDKLKDVATIQNKVLEIDWKKYMEIWKQITNYN--GVLY------PSIEQFNKYNDILRH 155
+ ++ V ++EI NYN Y +++ +L
Sbjct: 1827 QYVVERVGKRTGWLVEI------------VNYNVENQQYVAAGDLRALDTVTN---VLNF 1871
Query: 156 KKSIRNEINIKK-ESSCETEP 175
K ++ I+I + + S E
Sbjct: 1872 IK-LQK-IDIIELQKSLSLEE 1890
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 39.9 bits (93), Expect = 0.001
Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
Query: 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370
+ D +P + +F + G++ + Q V + ++
Sbjct: 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSS----GLTEQIDV 76
Query: 371 LVCNVRQLCFKPACVDGIV 389
N + K +D IV
Sbjct: 77 RKGNGLAVIEKKDAIDTIV 95
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 39.5 bits (92), Expect = 0.002
Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 6/106 (5%)
Query: 306 LASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRE 365
L + G++ +D CG G I + P V D + V ++ NV N
Sbjct: 218 LPENLEGEI-VDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN--MPEAL 274
Query: 366 LKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLF 411
+ ++ N +P + ++ + PF + + + +F
Sbjct: 275 DRCEFMINNALS-GVEPFRFNAVLCNPPF--HQQHALTDNVAWEMF 317
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 37.1 bits (86), Expect = 0.005
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 304 VRLAS-----PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN 358
VR + P P + D G G+I +E S P T VC +I+E+ + +N ++
Sbjct: 13 VRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINL 72
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 35.2 bits (81), Expect = 0.026
Identities = 12/79 (15%), Positives = 22/79 (27%), Gaps = 4/79 (5%)
Query: 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370
G LD +P+ F + G++ NV + K+
Sbjct: 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEH----GLTSKIDV 76
Query: 371 LVCNVRQLCFKPACVDGIV 389
+ N + +D I
Sbjct: 77 RLANGLSAFEEADNIDTIT 95
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 35.8 bits (83), Expect = 0.026
Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 11/106 (10%)
Query: 306 LASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRE 365
L G V LD CG G + V + P D++ V ++A + N + E
Sbjct: 192 LTPHTKGKV-LDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN--GVEGE 248
Query: 366 LKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLF 411
+ S + V D I+++ PF G +++ L
Sbjct: 249 VFASNVFSEV------KGRFDMIISNPPF--HDGMQTSLDAAQTLI 286
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Length = 421
Score = 35.8 bits (82), Expect = 0.033
Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 8/144 (5%)
Query: 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCG-DINEKLVLKTQANV 355
P + MV LA G L+P C G ++ + G +I+ K +
Sbjct: 25 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAE 84
Query: 356 LHNSGNLNRELKVSP--LVCN---VRQLCFKPACVDGIVTDLPFGKRVGSK-SNNFLLYR 409
+ L E + ++ N + K+ S + LY
Sbjct: 85 GILADFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYG 144
Query: 410 LFLIEIGKIVRPQIGRAILLTSDR 433
FL + ++++P G + +
Sbjct: 145 AFLEKAVRLLKPG-GVLVFVVPAT 167
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 34.8 bits (80), Expect = 0.037
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
Query: 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370
G + LD +P+E + G++ E NV + G + +
Sbjct: 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAH-GLKEK---IQV 70
Query: 371 LVCNVRQLCFKPACVDGIV 389
+ N + V I
Sbjct: 71 RLANGLAAFEETDQVSVIT 89
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 34.8 bits (79), Expect = 0.046
Identities = 16/127 (12%), Positives = 37/127 (29%), Gaps = 7/127 (5%)
Query: 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370
V +D G G + +++ +TF++ D ++ + ++ V
Sbjct: 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVF 82
Query: 371 LVCNVRQLCFK-PACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429
++ L F+ D I P+G R L + + +
Sbjct: 83 VIAAAESLPFELKNIADSISILFPWGTL---LEYVIKPNRDILSNVADLAKK--EAHFEF 137
Query: 430 TSDRKHL 436
+
Sbjct: 138 VTTYSDS 144
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 34.0 bits (77), Expect = 0.11
Identities = 6/61 (9%), Positives = 18/61 (29%)
Query: 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN 354
+ M+ D+F+D G G + ++ + + + + +
Sbjct: 157 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETM 216
Query: 355 V 355
Sbjct: 217 D 217
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 33.1 bits (76), Expect = 0.12
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 304 VRLAS-----PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN 354
VR P DV +D CG G + +E + + + D N + + T+ N
Sbjct: 21 VRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAI--DRNPEAISTTEMN 74
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 33.5 bits (76), Expect = 0.14
Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 7/98 (7%)
Query: 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVE-CSLSYPHTFFVCGDINEKLVLKTQANV 355
+Y ++ PG L+ G G + + +E + K N+
Sbjct: 97 IDASY-IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL 155
Query: 356 LHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLP 393
N V ++ D ++ D+P
Sbjct: 156 SEFYDIGN----VRTSRSDIADFIS-DQMYDAVIADIP 188
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 33.2 bits (75), Expect = 0.15
Identities = 17/99 (17%), Positives = 28/99 (28%), Gaps = 3/99 (3%)
Query: 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVE-CSLSYPHTFFVCGDINEKLVLKTQANV 355
P A +V PG L+ G G + + P + + + NV
Sbjct: 85 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNV 144
Query: 356 LHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPF 394
G +V ++ VD V D+
Sbjct: 145 SGCYGQP--PDNWRLVVSDLADSELPDGSVDRAVLDMLA 181
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 32.9 bits (75), Expect = 0.18
Identities = 7/107 (6%), Positives = 28/107 (26%), Gaps = 8/107 (7%)
Query: 305 RLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNR 364
L + D G G + + + ++++ + ++
Sbjct: 30 SLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNA-AF 88
Query: 365 ELKVSPLVCNVRQLC-------FKPACVDGIVTDLPFGKRVGSKSNN 404
++ L +V ++ + P+ ++ +
Sbjct: 89 SARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPD 135
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 32.5 bits (74), Expect = 0.19
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 304 VRLAS-----PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN 354
+R + P G++ D G G++ VE L+ + + + Q N
Sbjct: 43 MRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITI--EPRADRIENIQKN 96
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 33.1 bits (75), Expect = 0.21
Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 26/160 (16%)
Query: 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCG-DINEKLVLKTQANVLHNSG 360
+ + + G LD CG G S V G D+ + + + V +++
Sbjct: 74 STLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHA- 132
Query: 361 NLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNF------LLYRLF--- 411
+ SP NVR + G + +L + G ++ + L
Sbjct: 133 ---EKFFGSPSRSNVR-------FLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNK 182
Query: 412 ---LIEIGKIVRPQIGR-AILLTSDRKHLIQALHITSALW 447
EI +++R G + L +A L+
Sbjct: 183 LALFKEIHRVLRDG-GELYFSDVYADRRLSEAAQQDPILY 221
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 31.8 bits (72), Expect = 0.32
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 304 VRLAS-----PIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLH 357
VR + V D G ++ +E S P+ + N + + + N+
Sbjct: 28 VRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKK 86
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 31.9 bits (72), Expect = 0.33
Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 10/124 (8%)
Query: 299 IAYNMV-RLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCG-DINEKLVLKTQANVL 356
IA ++ R++ DV +D CG G ++ +L+ V DI+ + + N
Sbjct: 65 IAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMR---VIAIDIDPVKIALARNNAE 121
Query: 357 HNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIG 416
G ++ + + + L D + P+G + + F + + +
Sbjct: 122 VY-GIADK---IEFICGDFLLLASFLK-ADVVFLSPPWGGPDYATAETFDIRTMMSPDGF 176
Query: 417 KIVR 420
+I R
Sbjct: 177 EIFR 180
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA
modification enzyme, guanine 26, N(2),N(2)-dimethyltran
structural genomics; 1.90A {Pyrococcus horikoshii} SCOP:
c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Length = 378
Score = 31.7 bits (71), Expect = 0.54
Identities = 16/77 (20%), Positives = 29/77 (37%)
Query: 304 VRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLN 363
V L + + + LD + G + +L P DI+E + NV+ N
Sbjct: 40 VVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGEL 99
Query: 364 RELKVSPLVCNVRQLCF 380
RE K ++ + +
Sbjct: 100 RESKGRAILKGEKTIVI 116
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 31.9 bits (72), Expect = 0.55
Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 10/105 (9%)
Query: 307 ASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNREL 366
+ G LD G G + + + V + + VL Q + N L
Sbjct: 229 PEGVRGRQVLDLGAGYGALTLPLARMGAEVVGV--EDDLASVLSLQKGLEAN------AL 280
Query: 367 KVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLF 411
K L +V + + A D IVT+ PF VG +
Sbjct: 281 KAQALHSDVDEALTEEARFDIIVTNPPF--HVGGAVILDVAQAFV 323
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 31.3 bits (71), Expect = 0.59
Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 18/128 (14%)
Query: 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCG-DINEKLVLKTQANVLHNSGN 361
M++ A LD G G P+ G D +++V + G
Sbjct: 13 MIKTAECRAEHRVLDIGAGAGHT---ALAFSPYVQECIGVDATKEMVEVASSF-AQEKGV 68
Query: 362 LNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRP 421
N V L F D I + +F R + E+ ++++
Sbjct: 69 EN----VRFQQGTAESLPFPDDSFDIITCR--YAAH------HFSDVRKAVREVARVLKQ 116
Query: 422 QIGRAILL 429
GR +L+
Sbjct: 117 D-GRFLLV 123
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 30.3 bits (69), Expect = 0.99
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 307 ASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHN 358
+ DV +D CG G + VE + + + D + + T+ N+
Sbjct: 31 LNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAI--DYLDGAIEVTKQNLAKF 80
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 30.6 bits (69), Expect = 1.1
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 11/94 (11%)
Query: 301 YNMVRLASPI-PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNS 359
R+ + DV +D G G + C DIN + + N+ N
Sbjct: 184 GERARIMKKVSLNDVVVDMFAGVGPFSIACKN---AKKIYAIDINPHAIELLKKNIKLN- 239
Query: 360 GNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLP 393
E K+ P++ +VR++ + ++ +LP
Sbjct: 240 ---KLEHKIIPILSDVREV---DVKGNRVIMNLP 267
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 29.7 bits (67), Expect = 1.9
Identities = 22/128 (17%), Positives = 39/128 (30%), Gaps = 15/128 (11%)
Query: 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCG-DINEKLVLKTQANVLHNSGN 361
+++ G LD G G S V D+ E++V ++ G
Sbjct: 29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEK-VNKLGL 87
Query: 362 LNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRP 421
N V L ++ VD I F + FL E+ ++ +P
Sbjct: 88 KN----VEVLKSEENKIPLPDNTVDFIFMAFTF--------HELSEPLKFLEELKRVAKP 135
Query: 422 QIGRAILL 429
++
Sbjct: 136 F-AYLAII 142
>3p30_A HIV-1 GP41; HIV, GP41, cluster 2, 6-helix bundle, immune system;
3.30A {Human immunodeficiency virus 1}
Length = 96
Score = 28.3 bits (63), Expect = 1.9
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 113 IQNKVLEIDWKKYMEIWKQITNYNGVLYPSIEQ 145
+Q +VL +++ K+I+NY ++Y IE+
Sbjct: 43 LQARVLSGGRGGWLQWDKEISNYTHIIYELIEE 75
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 29.4 bits (66), Expect = 2.1
Identities = 26/138 (18%), Positives = 42/138 (30%), Gaps = 26/138 (18%)
Query: 302 NMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCG-DINEKLVLKTQANVLHNSG 360
+ D LD CG G I +E + + V G DIN + + +
Sbjct: 21 YPIIHNYLQEDDEILDIGCGSGKISLELA---SKGYSVTGIDINSEAIRLAETAARSPGL 77
Query: 361 NLNRELKVSPLVCNVRQLCFKPACVDGI--------VTDLPFGKRVGSKSNNFLLYRLFL 412
N K V N L F + D V D R+ +
Sbjct: 78 NQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRI-------------I 124
Query: 413 IEIGKIVRPQIGRAILLT 430
E+ ++++P L+
Sbjct: 125 KEVFRVLKPG-AYLYLVE 141
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Length = 530
Score = 29.8 bits (66), Expect = 2.1
Identities = 21/193 (10%), Positives = 48/193 (24%), Gaps = 26/193 (13%)
Query: 122 WKKYMEIWKQITNYNGV---------LYPSIEQFNKYNDILRHKKSIRNEINIKKESSCE 172
WK Y+E + NY+ V I+ + Y +R K K + +
Sbjct: 49 WKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYD 108
Query: 173 TEPQVNNVQIEKGDL---------------QNQELKEIDINSMCSSQNQKTNFTNPEENL 217
++I + E + I + N E+
Sbjct: 109 FALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168
Query: 218 LKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPV 277
+ + H M +R+ + + + ++
Sbjct: 169 RDYNKYEEGINIHLAKKMIEDRS--RDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 226
Query: 278 TQTSLHRRNIVEF 290
Q + +++
Sbjct: 227 AQQVDMWKKYIQW 239
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 29.4 bits (66), Expect = 2.5
Identities = 19/127 (14%), Positives = 47/127 (37%), Gaps = 16/127 (12%)
Query: 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNL 362
++++A+ + LD GGG + + V D+ E ++ +A + +G+
Sbjct: 29 LMQIAALKGNEEVLDVATGGGHVANAFAPFVKKV--VAFDLTEDILKVARAF-IEGNGHQ 85
Query: 363 NRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIVRPQ 422
V + + Q+ F + +F F+ E ++++
Sbjct: 86 Q----VEYVQGDAEQMPFTDERFHIVTCR--IAAH------HFPNPASFVSEAYRVLKKG 133
Query: 423 IGRAILL 429
G+ +L+
Sbjct: 134 -GQLLLV 139
>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.308.1.3
Length = 98
Score = 27.9 bits (62), Expect = 2.9
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 1/63 (1%)
Query: 213 PEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYF-WLVDLDDYDIDINLQIRYNEA 271
N F++ V E R G + VDL + + ++I
Sbjct: 27 KAPNKGTFQIVYKSRNNSHVNREEVIRELAGIVCTLNSENKVDLTNPQYTVVVEIIKAVC 86
Query: 272 YVG 274
+
Sbjct: 87 CLS 89
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A
{Escherichia coli}
Length = 505
Score = 29.5 bits (65), Expect = 3.1
Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 90 TEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQIT----NYNGVLYPSIEQ 145
+ + + +SD+L + ++ I NKV + Y + ++I N+ G S +
Sbjct: 294 SFSMNRDRIQSDVLNKAAEVISDIGNKVGDYLGDAYKSLAREIADDVKNFQGKTIRSYDD 353
Query: 146 ----FNKYNDILRHKKSIRNEINIKK 167
NK K + + +
Sbjct: 354 AMASLNKVLSNPGFKFNRADSDALAN 379
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 29.1 bits (64), Expect = 3.5
Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 1/98 (1%)
Query: 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN 354
L P ++ + GD F+D G G V+ +L +I + T
Sbjct: 226 LLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQ 285
Query: 355 VLHNSGNLNRE-LKVSPLVCNVRQLCFKPACVDGIVTD 391
++++ + ++++ V ++
Sbjct: 286 YEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQ 323
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 29.0 bits (64), Expect = 3.6
Identities = 12/110 (10%), Positives = 27/110 (24%), Gaps = 9/110 (8%)
Query: 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTI-PVECSLSYPHTFFVCGDINEKLVLKT 351
P ++ + PGD L+ G G + + ++ +
Sbjct: 87 AITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLA 146
Query: 352 QANV------LHNSGNLNRELKVSPLVCNVRQLCFKP--ACVDGIVTDLP 393
+ N S V + ++ D + D+
Sbjct: 147 KKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDML 196
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification,
transferase; HET: SAM; 2.00A {Methanocaldococcus
jannaschii}
Length = 272
Score = 28.9 bits (64), Expect = 3.7
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 5/83 (6%)
Query: 311 PGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSP 370
+V +D G G + + + N + L + LN+ V P
Sbjct: 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAY-----HYLCENIKLNKLNNVIP 173
Query: 371 LVCNVRQLCFKPACVDGIVTDLP 393
++ + R + K I+ +
Sbjct: 174 ILADNRDVELKDVADRVIMGYVH 196
>2apl_A Hypothetical protein PG0816; structural genomics, PSI, protein
initiative, midwest center for structural genomics,
MCSG, U function; 2.01A {Porphyromonas gingivalis} SCOP:
a.258.1.1
Length = 157
Score = 28.1 bits (62), Expect = 3.8
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 13/85 (15%)
Query: 18 TIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKDIEKVK--------ELRG 69
T+ + + FE + E+ LL K+I VF DL D + EL G
Sbjct: 77 TLVSVLEREFEQELPSPLPERLAPILLKNKAIQSVFAKYDLTDDFEASPEYEHLYTELTG 136
Query: 70 IDNILFIIATFENFGFSNKGTEEDS 94
I+ E+ G D+
Sbjct: 137 -----TIVLLIESNHLPTIGGGNDT 156
>1qbz_A Protein (SIV GP41 ectodomain); HIV, membrane fusion, peptide
inhibitor, coiled coil, SIV envelope glycoprotein GP41;
1.47A {Simian immunodeficiency virus} SCOP: h.3.2.1 PDB:
1qce_A 2ezo_A 2ezp_A 2ezq_A 2ezr_A 2ezs_A 2siv_B 2siv_A
Length = 123
Score = 27.6 bits (61), Expect = 4.9
Identities = 5/33 (15%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 115 NKVLEIDWKK--YMEIWKQITNYNGVLYPSIEQ 145
N L W + E +++ + +E+
Sbjct: 74 NASLTPKWNNETWQEWERKVDFLEENITALLEE 106
>1m1c_A GAG protein, major coat protein; dsRNA virus structure, RNA-protein
interaction, mRNA decapping, L-A virus,
QUAI-equivalence; 3.50A {Saccharomyces cerevisiae virus
l-a} SCOP: e.42.1.1
Length = 680
Score = 28.8 bits (63), Expect = 5.2
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Query: 227 VGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYVGLPVTQTSLHRRN 286
VG TV E G + Y L D + I+ + + G+P + H N
Sbjct: 56 VGNPTVCFNEGSSYLEG-IAKKYLTL----DGGLAIDNVLNELRSTCGIPGNAVASHAYN 110
Query: 287 IVEFNITTLKPTIAYNMVRL 306
I + + NM+R
Sbjct: 111 ITSWRWYDNHVALLMNMLRA 130
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural
genomics, protein structure initiative, nysgxrc; 2.80A
{Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Length = 541
Score = 28.5 bits (64), Expect = 6.4
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 303 MVRLASPIPGDVFLDPMCG-GG 323
++ L P P +V DP G G
Sbjct: 161 IIHLLKPQPREVVQDPAAGTAG 182
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine,
phosphorylation, M7G, spout MT, tRNA processing; HET:
SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Length = 246
Score = 27.8 bits (62), Expect = 7.8
Identities = 11/85 (12%), Positives = 28/85 (32%), Gaps = 14/85 (16%)
Query: 314 VFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVC 373
D CG G + ++ S ++P + +I ++ + ++ N +
Sbjct: 52 TIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ---- 107
Query: 374 NVRQL----------CFKPACVDGI 388
N+ L F+ + +
Sbjct: 108 NINVLRGNAMKFLPNFFEKGQLSKM 132
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA
methylase, type I restriction enzyme ST protein; HET:
SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP:
c.66.1.45
Length = 445
Score = 28.0 bits (63), Expect = 8.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 303 MVRLASPIPGDVFLDPMCGGG 323
MV +P G+ DP CG G
Sbjct: 163 MVDCINPQMGETVCDPACGTG 183
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 27.6 bits (61), Expect = 8.7
Identities = 12/101 (11%), Positives = 27/101 (26%), Gaps = 6/101 (5%)
Query: 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQ 352
+ P ++ + + L+ G G+ + LS + E+ Q
Sbjct: 73 QIIYPKDSFYIALKLNLNKEKRVLE--FGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQ 130
Query: 353 ANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLP 393
N+ + N V + + D+
Sbjct: 131 KNLKKFNLGKN----VKFFNVDFKDAEVPEGIFHAAFVDVR 167
>2h00_A Methyltransferase 10 domain containing protein; structural
genomics, structural genomics consortium, SGC; HET: SAH;
2.00A {Homo sapiens} SCOP: c.66.1.54
Length = 254
Score = 27.4 bits (60), Expect = 9.1
Identities = 11/91 (12%), Positives = 31/91 (34%), Gaps = 2/91 (2%)
Query: 307 ASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNREL 366
+ +D G I + +F+ ++++ + NV N+ + ++
Sbjct: 61 SDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKV 120
Query: 367 KVSPLVCNVRQLCFKPACV--DGIVTDLPFG 395
P + + + + D + + PF
Sbjct: 121 VKVPQKTLLMDALKEESEIIYDFCMCNPPFF 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.403
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,497,920
Number of extensions: 455669
Number of successful extensions: 942
Number of sequences better than 10.0: 1
Number of HSP's gapped: 921
Number of HSP's successfully gapped: 83
Length of query: 494
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 397
Effective length of database: 3,993,456
Effective search space: 1585402032
Effective search space used: 1585402032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.0 bits)