RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy19
(494 letters)
>d1vbka2 d.308.1.1 (A:1-175) Hypothetical protein PH1313, N-terminal
domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 175
Score = 53.3 bits (128), Expect = 6e-09
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 219 KFRVTCNRVGKH-TVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQIRYNEAYV 273
KFRVT R+ K + S+E + G + + VDL +YDI+I ++I +AY+
Sbjct: 108 KFRVTARRITKEFPLDSLEIQAKVGEYILNNENCEVDLKNYDIEIGIEIMQGKAYI 163
>d2c5sa2 d.308.1.1 (A:3-173) Thiamine biosynthesis protein ThiI,
N-terminal domain {Bacillus anthracis [TaxId: 1392]}
Length = 171
Score = 52.5 bits (126), Expect = 9e-09
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 219 KFRVTCNRVGKH-TVTSMESERAFGGKLNDTYFWL-VDLDDYDIDINLQIRYNEAYV--- 273
F++T +R KH + +ME GG + + + VD+ + D+++ ++IR +Y+
Sbjct: 103 TFKITVHRSYKHFPMRTMELLPEIGGHILENTEDITVDVHNPDVNVRVEIRSGYSYIMCD 162
Query: 274 ------GLP 276
GLP
Sbjct: 163 ERMGAGGLP 171
>d2dira1 d.308.1.3 (A:8-92) THUMP domain-containing protein 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 48.2 bits (115), Expect = 5e-08
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 1/63 (1%)
Query: 213 PEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWL-VDLDDYDIDINLQIRYNEA 271
N F++ V E R G + VDL + + ++I
Sbjct: 20 KAPNKGTFQIVYKSRNNSHVNREEVIRELAGIVCTLNSENKVDLTNPQYTVVVEIIKAVC 79
Query: 272 YVG 274
+
Sbjct: 80 CLS 82
>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces
viridochromogenes [TaxId: 1938]}
Length = 249
Score = 49.3 bits (117), Expect = 3e-07
Identities = 33/234 (14%), Positives = 58/234 (24%), Gaps = 56/234 (23%)
Query: 281 SLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVEC---------SL 331
LH L I + DP CG G + +
Sbjct: 20 VLHSAPGYPAFPVRLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQV 79
Query: 332 SYPHTFFVCGDINEKLVLKTQANVL---------------------------HNSGNLNR 364
++ K + L L
Sbjct: 80 IASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAARRLRERLTA 139
Query: 365 ---ELKVSPLVCNVRQL-----CFKPACVDGIVTDLPFGKRVGSKSNNFL-LYRLFLIEI 415
L + +V + D ++TDLP+G+R + L +
Sbjct: 140 EGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 199
Query: 416 GKIVRPQIGRAILLTSDRKHLIQALHITSALWKCRKQIKINMSGMKSFVFILNR 469
+ P A++ +DR I + K +++KI G +S V +
Sbjct: 200 ASAL-P--AHAVIAVTDRSRKIPVAPV-----KALERLKI---GTRSAVMVRAA 242
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 186
Score = 38.3 bits (88), Expect = 8e-04
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 6/100 (6%)
Query: 296 KPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANV 355
+ ++ LA P DV +D CG G + +E + D N + + T+ N+
Sbjct: 18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLEL--AGRVRRVYAIDRNPEAISTTEMNL 75
Query: 356 LHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFG 395
+ V+ + + + K +D V G
Sbjct: 76 QRH----GLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGG 111
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 37.0 bits (85), Expect = 0.005
Identities = 12/61 (19%), Positives = 20/61 (32%)
Query: 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN 354
L P ++ + GD F+D G G V+ +L +I + T
Sbjct: 200 LLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQ 259
Query: 355 V 355
Sbjct: 260 Y 260
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 264
Score = 34.6 bits (79), Expect = 0.020
Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 3/115 (2%)
Query: 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCG-DINEKLVLKT 351
+ P A +V PG L+ G G + + + V +
Sbjct: 78 QVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHA 137
Query: 352 QANVLHNSGNLNRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFL 406
+ NV G +V ++ VD V D+ V + L
Sbjct: 138 RRNVSGCYGQPPDN--WRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLL 190
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 34.0 bits (77), Expect = 0.030
Identities = 6/61 (9%), Positives = 18/61 (29%)
Query: 295 LKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQAN 354
+ M+ D+F+D G G + ++ + + + + +
Sbjct: 135 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETM 194
Query: 355 V 355
Sbjct: 195 D 195
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain
{Thermus aquaticus [TaxId: 271]}
Length = 223
Score = 33.5 bits (75), Expect = 0.035
Identities = 11/50 (22%), Positives = 17/50 (34%)
Query: 297 PTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEK 346
P + MV LA G L+P C G ++ + G +
Sbjct: 5 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDP 54
>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA
methyltransferase {Proteus vulgaris [TaxId: 585]}
Length = 320
Score = 32.8 bits (73), Expect = 0.085
Identities = 26/282 (9%), Positives = 68/282 (24%), Gaps = 18/282 (6%)
Query: 87 NKGTEEDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEIWKQITNYNGVLYPSIEQF 146
+++ G ++ + + D A + NK L+ D ++ GV SI F
Sbjct: 42 ALQRKKEYGNLEQHEYV-DWFLSFAKVVNKKLKPDGSFVVDFGGAYMK--GVPARSIYNF 98
Query: 147 NKYNDILRHKKSIRNEINIKKESSCETEPQVNNVQIEKGDLQNQELKEIDINSMCSSQNQ 206
++ E S P + + + +
Sbjct: 99 RVLIRMIDEVGFFLAEDFYWFNPSKLPSPIEWVNKRKIRVKDAVNTVWWFSKTEWPKSDI 158
Query: 207 KTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYDIDINLQI 266
+ + K ++ + ++ +L +
Sbjct: 159 TKVLAPYSDRMKKLIEDPDKFYTPKTRPSGHDIGKSFSKDNGGSIPPNLLQISNSESNGQ 218
Query: 267 RYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIP 326
+ + + P P D+ +D G T
Sbjct: 219 YLA-------------NCKLMGIKAHPARFPAKLPEFFIRMLTEPDDLVVDIFGGSNTTG 265
Query: 327 VECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKV 368
+ ++ ++ + V + L N+ + + +
Sbjct: 266 LVAERESRK--WISFEMKPEYVAASAFRFLDNNISEEKITDI 305
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 32.5 bits (73), Expect = 0.11
Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 11/111 (9%)
Query: 293 TTLKPTIAYNMVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCG-DINEKLVLKT 351
P ++ + PGD L+ G G + + S + V ++ +
Sbjct: 80 AITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLA 139
Query: 352 QANVLHNSGNLNRELKVSPLVCNVRQLC---------FKPACVDGIVTDLP 393
+ N + + + V NV + K D + D+
Sbjct: 140 KKN-YKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDML 189
>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA
methyltransferase Trm1 {Pyrococcus horikoshii [TaxId:
53953]}
Length = 375
Score = 31.5 bits (71), Expect = 0.24
Identities = 16/77 (20%), Positives = 29/77 (37%)
Query: 304 VRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLN 363
V L + + + LD + G + +L P DI+E + NV+ N
Sbjct: 38 VVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGEL 97
Query: 364 RELKVSPLVCNVRQLCF 380
RE K ++ + +
Sbjct: 98 RESKGRAILKGEKTIVI 114
>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis
[TaxId: 476]}
Length = 256
Score = 30.0 bits (66), Expect = 0.51
Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 1/130 (0%)
Query: 200 MCSSQNQKTNFTNPEENLLKFRVTCNRVGKHTVTSMESERAFGGKLNDTYFWLVDLDDYD 259
+ K F+ +E +L F + N + + E K L + +
Sbjct: 102 RDGMGSAKRRFSTGQETILFFSKSKNHTFNYDEVRVPYESTDRIKHASEKGILKNGKRWF 161
Query: 260 IDINLQIRYNEAYVGLPVTQTSLHRRNIVEFNITTLKPTIAYNMVRLASPIPGDVFLDPM 319
+ N ++ + + ++ + + +IT + ++R +S P D+ LD
Sbjct: 162 PNPNGRLCGEVWHFSSQRHKEKVNGKTVKLTHITPKPRDLIERIIRASSN-PNDLVLDCF 220
Query: 320 CGGGTIPVEC 329
G GT +
Sbjct: 221 MGSGTTAIVA 230
>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 309
Score = 29.8 bits (66), Expect = 0.83
Identities = 17/127 (13%), Positives = 43/127 (33%), Gaps = 4/127 (3%)
Query: 312 GDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANV-LHNSGNLNRELKVSP 370
L+ G + + + V D ++K + + N L
Sbjct: 133 PLKVLNLFGYTGVASLVAAAAGAEVTHV--DASKKAIGWAKENQVLAGLEQAPIRWICED 190
Query: 371 LVCNVRQLCFKPACVDGIVTDLP-FGKRVGSKSNNFLLYRLFLIEIGKIVRPQIGRAILL 429
+ +++ + + D I+TD P FG+ + + +++I + + ++L
Sbjct: 191 AMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL 250
Query: 430 TSDRKHL 436
T+
Sbjct: 251 TAYSIRA 257
>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 260
Score = 29.0 bits (64), Expect = 1.1
Identities = 17/142 (11%), Positives = 39/142 (27%), Gaps = 8/142 (5%)
Query: 259 DIDINLQIRYNEAYVGLPVTQTSL--HRRNIVEFNITTLKPTIAYNMVRLASPI-PGDVF 315
I + E G + + ++ P VR+A P ++
Sbjct: 52 HIHGETRKPDYELLYGSDTVTVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPDELV 111
Query: 316 LDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRELKVSPLVCNV 375
+D G G + + Y + + + N+ N E ++S +
Sbjct: 112 VDMFAGIGHLSLPI-AVYGKAKVIAIEKDPYTFKFLVENIHLN----KVEDRMSAYNMDN 166
Query: 376 RQLCFKPACVDGIVTDLPFGKR 397
R + ++ +
Sbjct: 167 RDFPGENIADRILMGYVVRTHE 188
>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase
3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 311
Score = 29.1 bits (64), Expect = 1.2
Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 6/106 (5%)
Query: 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNL 362
+ + V LD CG G + + + + V G +++ + + N
Sbjct: 27 IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKK--VLGVDQSEILYQAMDIIRLNKLED 84
Query: 363 NRELKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLY 408
L + + ++ VD I+++ + + +LY
Sbjct: 85 TITL----IKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLY 126
>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538
{Streptococcus pyogenes [TaxId: 1314]}
Length = 152
Score = 28.3 bits (62), Expect = 1.2
Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 4/114 (3%)
Query: 306 LASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNLNRE 365
+ G LD G G + +E + + + ++ + N
Sbjct: 9 IGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTL 68
Query: 366 LKVSPLVCNVRQLCFKPACVDGIVTDLPFGKRVGSKSNNFLLYRLFLIEIGKIV 419
LK + R + D + D P+ K + L + L E +V
Sbjct: 69 LK----MEAERAIDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVV 118
>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase
domain {Thermotoga maritima [TaxId: 2336]}
Length = 192
Score = 28.6 bits (63), Expect = 1.3
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 1/92 (1%)
Query: 303 MVRLASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEKLVLKTQANVLHNSGNL 362
++ P + LD G G P + D++ + VL+ L +
Sbjct: 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSE-VLRIAEEKLKEFSDR 73
Query: 363 NRELKVSPLVCNVRQLCFKPACVDGIVTDLPF 394
KVS + VDGI+ DL
Sbjct: 74 VSLFKVSYREADFLLKTLGIEKVDGILMDLGV 105
>d1dc1a_ c.52.1.11 (A:) Restriction endonuclease BsobI {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 27.9 bits (62), Expect = 2.7
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 334 PHTFFVCGDINEKLVL----KTQANVLHNSGNLNRELKVSPL 371
P T F+ I + + Q+ L NS NL + +V L
Sbjct: 271 PKTIFIGAAIEHSMAEEIWDQLQSGSLTNSANLTKTEQVGSL 312
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Length = 297
Score = 27.6 bits (61), Expect = 3.1
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 16/88 (18%)
Query: 92 EDSGQKDESDLLKDKLKDVATIQNKVLEIDWKKYMEI------------WKQITNYNGVL 139
++ +K+E + L + V+ + +K+ E KY + + I +YN +
Sbjct: 95 KEEKEKNEKEALLKASELVSGMGDKLGEYLGVKYKNVAKEVANDIKNFHGRNIRSYNEAM 154
Query: 140 YPSIEQFNKYNDILRHKKSIRNEINIKK 167
NK + K + ++ I
Sbjct: 155 ----ASLNKVLANPKMKVNKSDKDAIVN 178
>d2apla1 a.258.1.1 (A:2-150) Hypothetical protein PG0816
{Porphyromonas gingivalis [TaxId: 837]}
Length = 149
Score = 26.7 bits (59), Expect = 3.8
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 18 TIEATVVTGFEDVVVEECQEKFGKDLLLMKSIGRVFFNIDLKD 60
T+ + + FE + E+ LL K+I VF DL D
Sbjct: 76 TLVSVLEREFEQELPSPLPERLAPILLKNKAIQSVFAKYDLTD 118
>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA
methyltransferase {Rhodobacter sphaeroides [TaxId:
1063]}
Length = 279
Score = 27.0 bits (58), Expect = 4.9
Identities = 9/40 (22%), Positives = 11/40 (27%), Gaps = 2/40 (5%)
Query: 307 ASPIPGDVFLDPMCGGGTIPVECSLSYPHTFFVCGDINEK 346
A PG LD G G + +C D
Sbjct: 203 ALSHPGSTVLDFFAGSGVTARVAIQEGRN--SICTDAAPV 240
>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human
(Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 463
Score = 27.4 bits (60), Expect = 5.2
Identities = 19/144 (13%), Positives = 45/144 (31%), Gaps = 10/144 (6%)
Query: 186 DLQNQELKEIDINSMCSSQNQ-----KTNFTNPEENLLKFRVTCNRVGKHTVTSMESERA 240
+ + + + +N S + T P + ++ + H S +
Sbjct: 84 EAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRIS 143
Query: 241 FGGKLNDTYFWLVDLDDYDIDIN-LQIRYNEAYVGLPVTQTSLHRRNI----VEFNITTL 295
++ + ++ ID N L + L + TS + R I + +
Sbjct: 144 ATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEV 203
Query: 296 KPTIAYNMVRLASPIPGDVFLDPM 319
K + +M ++ + V P
Sbjct: 204 KAHLLADMAHISGLVAAKVIPSPF 227
>d1ylea1 d.108.1.8 (A:1-338) Arginine N-succinyltransferase, alpha
chain, AstA {Pseudomonas aeruginosa [TaxId: 287]}
Length = 338
Score = 26.6 bits (59), Expect = 8.3
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 27 FEDVVVEECQEKFGKD--LLLMKSIGRVFFNIDLKDIEKVKELRGIDNILFI 76
F D VV E + ++GR FF+++ + E +L G+ + F+
Sbjct: 156 FADAVVVEIVGYSDEQGESPFWNAVGRNFFDLNYIEAE---KLSGLKSRTFL 204
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.403
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,856,560
Number of extensions: 89345
Number of successful extensions: 233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 34
Length of query: 494
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 405
Effective length of database: 1,185,626
Effective search space: 480178530
Effective search space used: 480178530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)