BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1900
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FRF|A Chain A, Structural Studies And Protein Engineering Of Inositol
Phosphate Multikinase
pdb|4FRF|B Chain B, Structural Studies And Protein Engineering Of Inositol
Phosphate Multikinase
Length = 275
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 116/259 (44%), Gaps = 27/259 (10%)
Query: 49 LKDKDGHVLKYINKPILGERETKFYEVLQS-TEDPELLKLKKFVPQYFGTTTLKMSNQDV 107
L D G K + GE E KFYE S TE PE + ++ P Y GT ++ S+
Sbjct: 12 LVDDKGRFFKPLQGDSRGEIEVKFYESFSSNTEVPE--HIHRYFPVYHGTQAVEGSDG-A 68
Query: 108 KFLILSNLIGDLHEPRVMDIKIGYQTHEPGAPKEKVLAEESKYAGTKK-PWGFCIPGFQI 166
++L NL+ + +P VMD+K+G +T P A +E + K GT GF I GF++
Sbjct: 69 AMMVLENLLAEYTKPSVMDVKMGSRTWYPDASEEYIQKCLKKDTGTTTVSSGFRISGFEV 128
Query: 167 YNKDTGKREKYGKEFGKHLKKDSVLNVFKMFV------DQYSSPSVSIET-----VKSFL 215
Y+ K ++ + L D + FV D S P + + L
Sbjct: 129 YDHKESSFWKPERKLLRGLDVDGARLTLRKFVSSNSLSDTGSKPDSAFASSVYGGSHGIL 188
Query: 216 YSLKQIQSWFETQRIYHXXXXX----------XXXXXDEHKAYVHMIDFAHVVPATDNNL 265
L ++++WFE Q +YH D+ + V ++DFAHV+ + +
Sbjct: 189 TQLLELKTWFENQTLYHFNSCSILMVYENESILKGNDDDARPQVKLVDFAHVLDG-NGVI 247
Query: 266 DSNYLGGLNNIIKLFQTIL 284
D N+LGGL + I + IL
Sbjct: 248 DHNFLGGLCSFINFIREIL 266
>pdb|2AQX|A Chain A, Crystal Structure Of The Catalytic And Cam-binding Domains
Of Inositol 1,4,5-trisphosphate 3-kinase B
pdb|2AQX|B Chain B, Crystal Structure Of The Catalytic And Cam-binding Domains
Of Inositol 1,4,5-trisphosphate 3-kinase B
Length = 289
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 91/248 (36%), Gaps = 57/248 (22%)
Query: 87 LKKFVPQYFGTTTLKMSNQDVKFLILSNLIGDLHEPRVMDIKIGYQTH------------ 134
L+ FVP Y G ++ + +L+ D P VMD K+G +T+
Sbjct: 55 LRPFVPAYHGDVV----KDGERYNQMDDLLADFDSPCVMDCKMGVRTYLEEELTKARKKP 110
Query: 135 -------------EPGAPKEKVLAEESKYAGTKKPWGFCIP-----GFQI--YNKDTGKR 174
+P AP E+ A+ + W I GF+I K+ G
Sbjct: 111 SLRKDMYQKMVEVDPEAPTEEEKAQRAVTKPRYMQWRETISSTATLGFRIEGIKKEDGS- 169
Query: 175 EKYGKEFGKHLKKDSVLNVFKMFVDQYSSPSVSIETVKSFLYSLKQIQSWFETQRIYHXX 234
++F K ++ V F+ F + ++ + + +I +F+ +
Sbjct: 170 --VNRDFKKTKTREQVTEAFREFTKGNQNILIAYRDRLKAIRATLEISPFFKCHEVIGSS 227
Query: 235 XXXXXXXXDEHKAYVHMIDFA------------HVVPATDNNLDSNYLGGLNNIIKLFQT 282
++ K + MIDF H VP + N + YL GL+N+I
Sbjct: 228 LLFIHDKKEQAKVW--MIDFGKTTPLPEGQTLQHDVPWQEGNREDGYLSGLDNLI----D 281
Query: 283 ILDDLEQG 290
IL ++ QG
Sbjct: 282 ILTEMSQG 289
>pdb|2A98|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Inositol 1,4,5- Trisphosphate 3-kinase C
Length = 259
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 107/289 (37%), Gaps = 90/289 (31%)
Query: 52 KDGHVLKYINKPILGERETKFYEVLQSTEDPELLKLKKFVPQYFGTTTLKMSNQDVK-FL 110
+DG +LK + E + E Q +DP L+ FVP Y+G M QD + F
Sbjct: 1 EDGRILKRFCQC-----EQRSLE--QLMKDP----LRPFVPAYYG-----MVLQDGQTFN 44
Query: 111 ILSNLIGDLHEPRVMDIKIGYQTH-------------------------EPGAPKEKVLA 145
+ +L+ D P +MD K+G +T+ +PGAP
Sbjct: 45 QMEDLLADFEGPSIMDCKMGSRTYLEEELVKARERPRPRKDMYEKMVAVDPGAPT----P 100
Query: 146 EESKYAGTKKP----W----------GFCIPGFQIYNKDTGKREKYGKEFGKHLKKDSVL 191
EE KP W GF I G + + F K + V
Sbjct: 101 EEHAQGAVTKPRYMQWRETMSSTSTLGFRIEGIKKADGTCNT------NFKKTQALEQVT 154
Query: 192 NVFKMFVDQYSSPSVSIETVKSFLYSLKQ---IQSWFETQRIYHXXXXXXXXXXDEHK-- 246
V + FVD V ++ + L L++ I +F+T H +H
Sbjct: 155 KVLEDFVD---GDHVILQKYVACLEELREALEISPFFKT----HEVVGSSLLFVHDHTGL 207
Query: 247 AYVHMIDF------------AHVVPATDNNLDSNYLGGLNNIIKLFQTI 283
A V MIDF +H +P + N + YL GL+N+I L Q +
Sbjct: 208 AKVWMIDFGKTVALPDHQTLSHRLPWAEGNREDGYLWGLDNMICLLQGL 256
>pdb|1W2C|A Chain A, Human Inositol (1,4,5) Trisphosphate 3-Kinase Complexed
With Mn2+AMPPNPINS(1,4,5)P3
pdb|1W2C|B Chain B, Human Inositol (1,4,5) Trisphosphate 3-Kinase Complexed
With Mn2+AMPPNPINS(1,4,5)P3
pdb|1W2D|A Chain A, Human Inositol (1,4,5)-Trisphosphate 3-Kinase Complexed
With Mn2+ADPINS(1,3,4,5)P4
pdb|1W2D|B Chain B, Human Inositol (1,4,5)-Trisphosphate 3-Kinase Complexed
With Mn2+ADPINS(1,3,4,5)P4
Length = 265
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 85/248 (34%), Gaps = 67/248 (27%)
Query: 87 LKKFVPQYFGTTTLKMSNQDVKFLILSNLIGDLHEPRVMDIKIGYQTH------------ 134
L+ VP + G + +L L +L+ P V+D K+G +T+
Sbjct: 31 LRGCVPAFHGV----VERDGESYLQLQDLLDGFDGPCVLDCKMGVRTYLEEELTKARERP 86
Query: 135 -------------EPGAPKEKVLAEESKYAGTKKPW----------GFCIPGFQIYNKDT 171
+P AP E+ A+ + W GF I G + +
Sbjct: 87 KLRKDMYKKMLAVDPEAPTEEEHAQRAVTKPRYMQWREGISSSTTLGFRIEGIKKADGSC 146
Query: 172 GKREKYGKEFGKHLKKDSVLNVFKMFVDQYSSPSVSIETVKSFLYSLKQIQSWFETQRIY 231
+F ++ VL VF+ FV E ++ +L L+QI+ E +
Sbjct: 147 ST------DFKTTRSREQVLRVFEEFVQGDE------EVLRRYLNRLQQIRDTLEVSEFF 194
Query: 232 HXXXXXXXXXX----DEHKAYVHMIDFAHVVPATDN------------NLDSNYLGGLNN 275
H+A V +IDF P D N + YL GL+N
Sbjct: 195 RRHEVIGSSLLFVHDHCHRAGVWLIDFGKTTPLPDGQILDHRRPWEEGNREDGYLLGLDN 254
Query: 276 IIKLFQTI 283
+I + ++
Sbjct: 255 LIGILASL 262
>pdb|1W2F|A Chain A, Human Inositol (1,4,5)-Trisphosphate 3-Kinase Substituted
With Selenomethionine
pdb|1W2F|B Chain B, Human Inositol (1,4,5)-Trisphosphate 3-Kinase Substituted
With Selenomethionine
Length = 276
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 85/250 (34%), Gaps = 67/250 (26%)
Query: 87 LKKFVPQYFGTTTLKMSNQDVKFLILSNLIGDLHEPRVMDIKIGYQTH------------ 134
L+ VP + G + +L L +L+ P V+D K G +T+
Sbjct: 42 LRGCVPAFHGV----VERDGESYLQLQDLLDGFDGPCVLDCKXGVRTYLEEELTKARERP 97
Query: 135 -------------EPGAPKEKVLAEESKYAGTKKPW----------GFCIPGFQIYNKDT 171
+P AP E+ A+ + W GF I G + +
Sbjct: 98 KLRKDXYKKXLAVDPEAPTEEEHAQRAVTKPRYXQWREGISSSTTLGFRIEGIKKADGSC 157
Query: 172 GKREKYGKEFGKHLKKDSVLNVFKMFVDQYSSPSVSIETVKSFLYSLKQIQSWFETQRIY 231
+F ++ VL VF+ FV E ++ +L L+QI+ E +
Sbjct: 158 ST------DFKTTRSREQVLRVFEEFVQGDE------EVLRRYLNRLQQIRDTLEVSEFF 205
Query: 232 HXXXXXXXXX----XDEHKAYVHMIDFAHVVPATDN------------NLDSNYLGGLNN 275
H+A V +IDF P D N + YL GL+N
Sbjct: 206 RRHEVIGSSLLFVHDHCHRAGVWLIDFGKTTPLPDGQILDHRRPWEEGNREDGYLLGLDN 265
Query: 276 IIKLFQTILD 285
+I + ++ +
Sbjct: 266 LIGILASLAE 275
>pdb|1TZD|A Chain A, Crystal Structure Of The Catalytic Core Of Inositol 1,4,5-
Trisphosphate 3-Kinase
pdb|1TZD|B Chain B, Crystal Structure Of The Catalytic Core Of Inositol 1,4,5-
Trisphosphate 3-Kinase
Length = 275
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 85/250 (34%), Gaps = 67/250 (26%)
Query: 87 LKKFVPQYFGTTTLKMSNQDVKFLILSNLIGDLHEPRVMDIKIGYQTH------------ 134
L+ VP + G + +L L +L+ P V+D K G +T+
Sbjct: 41 LRGCVPAFHGV----VERDGESYLQLQDLLDGFDGPCVLDCKXGVRTYLEEELTKARERP 96
Query: 135 -------------EPGAPKEKVLAEESKYAGTKKPW----------GFCIPGFQIYNKDT 171
+P AP E+ A+ + W GF I G + +
Sbjct: 97 KLRKDXYKKXLAVDPEAPTEEEHAQRAVTKPRYXQWREGISSSTTLGFRIEGIKKADGSC 156
Query: 172 GKREKYGKEFGKHLKKDSVLNVFKMFVDQYSSPSVSIETVKSFLYSLKQIQSWFETQ--- 228
+F ++ V VF+ F E +K +L L+QI+ E
Sbjct: 157 ST------DFKTTRSREQVTRVFEEFXQG------DAEVLKRYLNRLQQIRDTLEISDFF 204
Query: 229 RIYHXXXXXXXXXXDE-HKAYVHMIDFA------------HVVPATDNNLDSNYLGGLNN 275
R + D H+A V +IDF H P + N + YL GL+N
Sbjct: 205 RRHEVIGSSLLFVHDHCHRAGVWLIDFGKTTPLPNGQILDHRRPWEEGNREDGYLLGLDN 264
Query: 276 IIKLFQTILD 285
+I + + +
Sbjct: 265 LIGILANLAE 274
>pdb|2IEW|A Chain A, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
From S. Cerevisiae
pdb|2IEW|B Chain B, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
From S. Cerevisiae
pdb|2IF8|A Chain A, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
In Complex With Adp And Mn2+ From S. Cerevisiae
pdb|2IF8|B Chain B, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
In Complex With Adp And Mn2+ From S. Cerevisiae
Length = 363
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 103 SNQDVKFLILSNLIGDLHEPRVMDIKIGYQTHEPGAPKEKVLAEESKYAG---TKKPWGF 159
S + ++L+L NL+ +P ++DIK+G ++ A EK E K T GF
Sbjct: 108 SEKSKQYLVLENLLYGFSKPNILDIKLGKTLYDSKASLEK--RERMKRVSETTTSGSLGF 165
Query: 160 CIPGFQI 166
I G +I
Sbjct: 166 RICGMKI 172
>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|C Chain C, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|D Chain D, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|E Chain E, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|F Chain F, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
Length = 384
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 209 ETVKSFLYSLKQIQSWFETQRIYHXXXXXXXXXXDEHKAYVHMIDF 254
ETVK F+ L + + QRI H DEH +VH+ DF
Sbjct: 115 ETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEH-GHVHITDF 159
>pdb|3VF0|B Chain B, Raver1 In Complex With Metavinculin L954 Deletion Mutant
Length = 285
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 18/109 (16%)
Query: 90 FVPQYFGTTTLKMSNQDVKFLILSNLIGDLHEPRVMDIKIGYQTHEPGAPKEKVLA---- 145
FV +Y GT + + N + I H+ R+ + ++ Q P + +L
Sbjct: 52 FVDKYKGTAFVTLLNGEQA----EAAINAFHQSRLRERELSVQLQ----PTDALLCVANL 103
Query: 146 ----EESKYAGTKKPWGFCIPGFQIYNKDTGKREKYGKEFGKHLKKDSV 190
+ ++ +P+G F +Y++ TG+ + YG F +++KKDS
Sbjct: 104 PPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYG--FAEYMKKDSA 150
>pdb|3SMZ|A Chain A, Human Raver1 Rrm1-3 Domains (Residues 39-320)
Length = 284
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 18/109 (16%)
Query: 90 FVPQYFGTTTLKMSNQDVKFLILSNLIGDLHEPRVMDIKIGYQTHEPGAPKEKVLA---- 145
FV +Y GT + + N + I H+ R+ + ++ Q P + +L
Sbjct: 52 FVDKYKGTAFVTLLNGEQA----EAAINAFHQSRLRERELSVQLQ----PTDALLCVANL 103
Query: 146 ----EESKYAGTKKPWGFCIPGFQIYNKDTGKREKYGKEFGKHLKKDSV 190
+ ++ +P+G F +Y++ TG+ + YG F +++KKDS
Sbjct: 104 PPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYG--FAEYMKKDSA 150
>pdb|3H2U|B Chain B, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With
Human Vinculin Tail Domain Vt
pdb|3H2U|D Chain D, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With
Human Vinculin Tail Domain Vt
Length = 283
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 18/109 (16%)
Query: 90 FVPQYFGTTTLKMSNQDVKFLILSNLIGDLHEPRVMDIKIGYQTHEPGAPKEKVLA---- 145
FV +Y GT + + N + I H+ R+ + ++ Q P + +L
Sbjct: 50 FVDKYKGTAFVTLLNGEQA----EAAINAFHQSRLRERELSVQLQ----PTDALLCVANL 101
Query: 146 ----EESKYAGTKKPWGFCIPGFQIYNKDTGKREKYGKEFGKHLKKDSV 190
+ ++ +P+G F +Y++ TG+ + YG F +++KKDS
Sbjct: 102 PPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYG--FAEYMKKDSA 148
>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia
pdb|3GC0|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia In
Complex With Amp
Length = 329
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 184 HLKKDSVLNVFKMFVDQYSSPSVSIETVKSFLYSLKQIQSWFETQRIYH 232
HL + N K ++D+ +P VS+ +KSFLY L ++ ++R H
Sbjct: 109 HLIFEYAENDLKKYMDK--NPDVSMRVIKSFLYQLINGVNFCHSRRCLH 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,798,684
Number of Sequences: 62578
Number of extensions: 367491
Number of successful extensions: 867
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 851
Number of HSP's gapped (non-prelim): 17
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)