Query psy1900
Match_columns 293
No_of_seqs 134 out of 602
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 19:08:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1900.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1900hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02667 inositol polyphosphat 100.0 1.5E-77 3.3E-82 555.9 26.7 260 26-290 1-280 (286)
2 PF03770 IPK: Inositol polypho 100.0 7.3E-59 1.6E-63 411.2 11.9 173 109-281 1-197 (197)
3 KOG1620|consensus 100.0 7E-51 1.5E-55 377.1 16.7 216 68-285 45-283 (284)
4 KOG1621|consensus 100.0 5.5E-44 1.2E-48 332.1 9.9 219 31-284 186-456 (458)
5 PF01504 PIP5K: Phosphatidylin 93.3 0.19 4.1E-06 46.3 5.9 77 48-129 22-103 (252)
6 cd00139 PIPKc Phosphatidylinos 93.2 0.25 5.5E-06 47.0 6.8 162 48-260 103-273 (313)
7 smart00330 PIPKc Phosphatidyli 92.5 0.32 7E-06 46.9 6.5 72 52-129 81-158 (342)
8 PF02958 EcKinase: Ecdysteroid 88.1 0.37 7.9E-06 44.4 2.6 41 232-273 221-263 (294)
9 KOG0229|consensus 86.9 1.3 2.8E-05 43.7 5.6 84 50-140 148-235 (420)
10 PLN03185 phosphatidylinositol 82.5 3.3 7.2E-05 44.1 6.7 72 52-128 456-530 (765)
11 COG5253 MSS4 Phosphatidylinosi 81.6 1.1 2.3E-05 45.2 2.5 90 31-132 369-468 (612)
12 PF08566 Pam17: Mitochondrial 63.3 5.3 0.00011 34.9 2.1 33 67-99 116-149 (173)
13 PF01163 RIO1: RIO1 family; I 60.0 9.6 0.00021 33.5 3.3 41 239-282 138-178 (188)
14 KOG0230|consensus 55.8 9.4 0.0002 43.2 2.9 81 47-132 1370-1462(1598)
15 cd05146 RIO3_euk RIO kinase fa 52.2 11 0.00023 33.6 2.2 43 237-282 154-196 (197)
16 COG0478 RIO-like serine/threon 39.6 36 0.00077 32.3 3.7 37 247-283 239-275 (304)
17 PF07914 DUF1679: Protein of u 39.1 33 0.00072 33.9 3.6 68 56-144 108-175 (414)
18 PF10707 YrbL-PhoP_reg: PhoP r 38.7 51 0.0011 29.2 4.5 29 67-100 59-88 (199)
19 PF13575 DUF4135: Domain of un 26.1 2.1E+02 0.0045 27.6 6.7 104 24-133 42-178 (370)
20 COG1718 RIO1 Serine/threonine 23.9 1.5E+02 0.0032 27.9 4.9 41 239-282 198-238 (268)
21 cd05144 RIO2_C RIO kinase fami 22.3 2.5E+02 0.0053 23.8 5.9 45 232-281 150-196 (198)
No 1
>PLN02667 inositol polyphosphate multikinase
Probab=100.00 E-value=1.5e-77 Score=555.89 Aligned_cols=260 Identities=31% Similarity=0.541 Sum_probs=231.0
Q ss_pred CCccccccccCCCCccCCcccceeecCCceEEeeecCCCCChHHHHHHHHHhcCCCchhhhccccccccceeeeeeccCC
Q psy1900 26 GTELLAEQVGGHEFIAGKQTMSMLKDKDGHVLKYINKPILGERETKFYEVLQSTEDPELLKLKKFVPQYFGTTTLKMSNQ 105 (293)
Q Consensus 26 ~l~~f~~QVaGH~~~~g~~~~~~l~~~~g~i~Kp~~~~~~g~~E~~FYe~l~~~~d~~~~~L~~fiP~y~G~~~~~~~~~ 105 (293)
.|+|.+||||||.+++++ .|+|++++|+|+||++++.||+||++||+.++++.+ .+..|++|+|+|+|++.++.+.
T Consensus 1 ~~~~~~hQvAGH~~~~~~--~g~L~~~~g~~~Kp~~~~~rg~rE~~FY~~~~~~~~-~~~~L~~~~P~y~G~~~~~~~~- 76 (286)
T PLN02667 1 DLKVPEHQVAGHRASDGK--LGPLVDDSGRFYKPLQDDSRGEREAAFYESFSSDTR-VPDHIRRFFPVFHGTQLVEASD- 76 (286)
T ss_pred CCCCccccccCCccccCC--ccceEcCCCcEEeccCCcccchHHHHHHHHHhcccc-chHHHHhhCcccceeEeeccCC-
Confidence 478999999999987765 599999999999999999999999999999986532 2357999999999999875432
Q ss_pred CceeeeehhhhhcCCcceEEEeeecceeCCCCCCHHHHHHHHhhhhc-CCCceeeEeeceeEEecCCCceeecccccccc
Q psy1900 106 DVKFLILSNLIGDLHEPRVMDIKIGYQTHEPGAPKEKVLAEESKYAG-TKKPWGFCIPGFQIYNKDTGKREKYGKEFGKH 184 (293)
Q Consensus 106 ~~~~i~LEdLt~g~~~PcIlDlKmG~rt~~~~as~eK~~r~~~K~~~-Ts~~lGfRi~G~~v~~~~~~~~~~~~K~~Gr~ 184 (293)
+..||+|||||++|++|||||||||+|||+|+||+||++++.+|+.. ||+++|||||||+||+++++.+.++||+|||+
T Consensus 77 ~~~~i~LeDLt~g~~~PcVlDlKmG~rt~~~~as~eK~~r~~~k~~~tTs~slGfRi~Gmkvy~~~~~~~~~~dK~~Gr~ 156 (286)
T PLN02667 77 GSGLLVLEDLLAGYTKPCVMDVKMGSRTWYPEASEEYIQKCLKKDRETTTVSLGFRVSGFKVYDHKESEFWKAERKLVKG 156 (286)
T ss_pred CceeEEehHHhcCCCCCeEEEEEeccEecCCCCCHHHHHHHHhhccccccccccEEEEEeEEEecCCCeeEEechHHhhc
Confidence 34899999999999999999999999999999999999999999874 78999999999999999889999999999999
Q ss_pred CChhhHHHHHHhcccCCCCCcch------HHH---HHHHHHHHHHHHHHHHhcCceEEeeeeEEEEEeCCC---------
Q psy1900 185 LKKDSVLNVFKMFVDQYSSPSVS------IET---VKSFLYSLKQIQSWFETQRIYHFYSSSLLFSYDEHK--------- 246 (293)
Q Consensus 185 lt~e~~~~~l~~Ff~~~~~~~r~------~~~---l~~~l~~L~~L~~~~e~~~~~~f~sSSLLivyD~~~--------- 246 (293)
+|.+++.++|+.||+++....+. .++ +..+|.||++|++|||+|..|||||||||||||++.
T Consensus 157 lt~~~~~~~l~~F~~~~~~~~~~~~~~~~~~v~~~~~~iL~qL~~L~~~fe~q~~~rfysSSLLivYDg~~~~~~~~~~~ 236 (286)
T PLN02667 157 LDADGVRLALRKFVSSNSPADPNPDCAFASAVYGGSHGILAQLLELKSWFEEQTLYHFFSASILIVYEGEAILKGNPEDS 236 (286)
T ss_pred CCHHHHHHHHHHHhcCCccccccchhhhHHHHhhhHHHHHHHHHHHHHHHHhCCceEEEEeEEEEEEcCCccccccCCCC
Confidence 99999999999999976543210 122 367999999999999999999999999999999953
Q ss_pred -ceEEEeecCCcCCCCCCCCChhHHHHHHHHHHHHHHHHhhhccC
Q psy1900 247 -AYVHMIDFAHVVPATDNNLDSNYLGGLNNIIKLFQTILDDLEQG 290 (293)
Q Consensus 247 -~~vrlIDFAh~~~~~~~~~D~g~l~GL~nLi~il~~il~~~~~~ 290 (293)
++||||||||+++.+ +++|+|||+||+|||++|++|+++.++.
T Consensus 237 ~v~VkmIDFAH~~~~~-~~~D~gyL~GL~nLi~~l~~il~~~~~~ 280 (286)
T PLN02667 237 RVEVKLVDFAHVLDGN-GVIDHNFLGGLCSLIKFISEILTSPDES 280 (286)
T ss_pred cceEEEEeCccccCCC-CCCCccHHHHHHHHHHHHHHHhhChhhc
Confidence 899999999999876 6899999999999999999999876653
No 2
>PF03770 IPK: Inositol polyphosphate kinase ; InterPro: IPR005522 ArgRIII has been demonstrated to be an inositol polyphosphate kinase [] which catalyses the reaction ATP + 1D-myo-inositol 1,4,5-trisphosphate = ADP + 1D-myo-inositol 1,3,4,5-tetrakisphosphate .; GO: 0008440 inositol trisphosphate 3-kinase activity; PDB: 2IF8_B 2IEW_B 1W2C_A 1W2F_A 1W2D_A 2A98_A 2AQX_A 1TZD_A.
Probab=100.00 E-value=7.3e-59 Score=411.21 Aligned_cols=173 Identities=41% Similarity=0.709 Sum_probs=149.2
Q ss_pred eeeehhhhhcCCcceEEEeeecceeCCCCCCHHHHHHHHhhhh-cCCCceeeEeeceeEEecCCCceeeccccccccCCh
Q psy1900 109 FLILSNLIGDLHEPRVMDIKIGYQTHEPGAPKEKVLAEESKYA-GTKKPWGFCIPGFQIYNKDTGKREKYGKEFGKHLKK 187 (293)
Q Consensus 109 ~i~LEdLt~g~~~PcIlDlKmG~rt~~~~as~eK~~r~~~K~~-~Ts~~lGfRi~G~~v~~~~~~~~~~~~K~~Gr~lt~ 187 (293)
||+|||||++|++|||||||||+|||+|+|+++|++++..|+. +|++++|||||||++|++.++++++++|+|||+++.
T Consensus 1 yi~LEdlt~~~~~PcVlDiKmG~rt~~~~a~~~K~~~~~~k~~~tts~~lGfRi~G~~~~~~~~~~~~~~~K~~Gr~l~~ 80 (197)
T PF03770_consen 1 YIVLEDLTYGFRKPCVLDIKMGTRTYDPDASPEKIRREEKKSRYTTSASLGFRICGMQVYDPDSGEYVKYDKYYGRSLTP 80 (197)
T ss_dssp EEEEE-TTTTSSSEEEEEEEESS-SS-HHHHBCHHHHHHHHHHCSTHHHHSEEEEEEEE-E-STTSEEEEEHHHTTH-SH
T ss_pred CceeehhhcCCCCceEEEEEEcCeEcCccccHHHHHHHHHHHccCCccccCeEEEEEEEeccCCCceEEEecHHhhhcCH
Confidence 8999999999999999999999999999999999999999976 478999999999999999999999999999999999
Q ss_pred hhHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHHHHHHhcCceEEeeeeEEEEEeCC----------------------
Q psy1900 188 DSVLNVFKMFVDQYSSPSVSIETVKSFLYSLKQIQSWFETQRIYHFYSSSLLFSYDEH---------------------- 245 (293)
Q Consensus 188 e~~~~~l~~Ff~~~~~~~r~~~~l~~~l~~L~~L~~~~e~~~~~~f~sSSLLivyD~~---------------------- 245 (293)
+++.++|+.||+.+....+...+++.+++||++|++||++|..|||||||||||||++
T Consensus 81 ~~~~~~l~~Ff~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~f~sSSLLivYd~~~~~~~~~~~~~~~~~~~~~~~~ 160 (197)
T PF03770_consen 81 EEVRDALKKFFNNGSSPRRRRELLRSILKQLEQLREWFESQRSFRFYSSSLLIVYDGDPSRLENESSSSSTSTSDSDDPP 160 (197)
T ss_dssp HHHHHHHHHHHT-TT-HHTHHHHHHHHHHHHHHHHHHHCC-CCEEEESEEEEEEEETTHHHHHHC---------------
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhcccCeeecceEEEEEcCCcccccccccccccccccccCCC
Confidence 9999999999998765545567999999999999999999999999999999999999
Q ss_pred -CceEEEeecCCcCCCCCCCCChhHHHHHHHHHHHHH
Q psy1900 246 -KAYVHMIDFAHVVPATDNNLDSNYLGGLNNIIKLFQ 281 (293)
Q Consensus 246 -~~~vrlIDFAh~~~~~~~~~D~g~l~GL~nLi~il~ 281 (293)
.++||||||||+.+.+.+++|+|||+||+|||++|+
T Consensus 161 ~~~~vklIDFAH~~~~~~~~~D~g~l~GL~nLi~~le 197 (197)
T PF03770_consen 161 NKVDVKLIDFAHVFPNPNGGPDEGFLFGLNNLISILE 197 (197)
T ss_dssp S-EEEEEE--TTEEE-TTTS--HHHHHHHHHHHHHH-
T ss_pred CcccEEEEECCCcccCCCCCCCccHHHHHHHHHHHhC
Confidence 299999999999996557999999999999999985
No 3
>KOG1620|consensus
Probab=100.00 E-value=7e-51 Score=377.10 Aligned_cols=216 Identities=29% Similarity=0.445 Sum_probs=183.5
Q ss_pred HHHHHHHHHhcCCCchhhhccccccccceeeeee--ccCCCceeeeehhhhhcCCcceEEEeeecceeCCCCCCHHHHHH
Q psy1900 68 RETKFYEVLQSTEDPELLKLKKFVPQYFGTTTLK--MSNQDVKFLILSNLIGDLHEPRVMDIKIGYQTHEPGAPKEKVLA 145 (293)
Q Consensus 68 ~E~~FYe~l~~~~d~~~~~L~~fiP~y~G~~~~~--~~~~~~~~i~LEdLt~g~~~PcIlDlKmG~rt~~~~as~eK~~r 145 (293)
.+..+|....+ .+....+++..+|.+.+..... .+.....||+|||||++|++|||||||||+|||+|+||+||+++
T Consensus 45 ~~~~~~~~~~s-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~LEdlt~~~~~PcVLDlKmGtrq~~~dAS~eK~~~ 123 (284)
T KOG1620|consen 45 ISPQLYGASSS-GDKILLPVSRYCHNYHLTGIYELVKDRVSAKFLLLEDLTSGYEKPCVLDLKMGTRQHGDDASEEKRAR 123 (284)
T ss_pred ccccccccccc-CcccccccccccchhhhcccccccccccccchhhhHHHHHhccCcceEEeeecceecccccCHHHHHH
Confidence 34444444422 2334567788888887755433 34455799999999999999999999999999999999999999
Q ss_pred HHhhhh-cCCCceeeEeeceeEEecCCCceeeccccccccCChhhHHHHHHhcccCCCC-CcchHHHHHHHHHHHHHHHH
Q psy1900 146 EESKYA-GTKKPWGFCIPGFQIYNKDTGKREKYGKEFGKHLKKDSVLNVFKMFVDQYSS-PSVSIETVKSFLYSLKQIQS 223 (293)
Q Consensus 146 ~~~K~~-~Ts~~lGfRi~G~~v~~~~~~~~~~~~K~~Gr~lt~e~~~~~l~~Ff~~~~~-~~r~~~~l~~~l~~L~~L~~ 223 (293)
+.+||. +||+++|||||||+||+..++.|++.+|+|||.++.+++..++..||+.... ..+...++..++.||.+|++
T Consensus 124 q~~Kc~~tTs~~LG~Ri~GmqV~~~~~~~~~~~~k~~gr~~~~~g~~~al~~f~~~~~~~~~~l~~~~~~il~qL~~l~~ 203 (284)
T KOG1620|consen 124 QLAKCTQTTSASLGVRICGMQVYEAENNSYVFRSKYYGRSLSVEGFRLALMRFFHNGSKLRHSLVGLLVEILRQLLGLKA 203 (284)
T ss_pred HHHHhhcccceeeceEEeccEEEeccCceEEecchhcccccchhhHHHHHHHHHhcchhhhHHHHhhhHHHHHHHHHHHH
Confidence 999986 4799999999999999999999999999999999999999999999998732 11233466789999999999
Q ss_pred HHHhcCceEEeeeeEEEEEeCC----C--------ceEEEeecCCcCCCCC-------CCCChhHHHHHHHHHHHHHHHH
Q psy1900 224 WFETQRIYHFYSSSLLFSYDEH----K--------AYVHMIDFAHVVPATD-------NNLDSNYLGGLNNIIKLFQTIL 284 (293)
Q Consensus 224 ~~e~~~~~~f~sSSLLivyD~~----~--------~~vrlIDFAh~~~~~~-------~~~D~g~l~GL~nLi~il~~il 284 (293)
|+++|.+|||||||||+|||+. . ++|+||||||+.+... ++ |+||++||+||+++++.++
T Consensus 204 ~~~~~~~~rf~ssSlLviYd~~~~~~~~~p~~~~~v~v~lidfah~~~~~~~~d~~~~~~-D~g~i~gl~~ll~~~~~~~ 282 (284)
T KOG1620|consen 204 VLEEQEGYRFYSSSLLVIYDGEILADSGDPEIAPEVDVKLIDFAHVTFSNTIIDHNTLGG-DEGYIFGLKNLLSILRSIL 282 (284)
T ss_pred HHHHhhceeeecceEEEEEeccccccCCCcccccccceeEeeeeecccCCceeccccccc-chhhHHHHHHHHHHHHhhc
Confidence 9999999999999999999999 2 9999999999987652 45 9999999999999999887
Q ss_pred h
Q psy1900 285 D 285 (293)
Q Consensus 285 ~ 285 (293)
+
T Consensus 283 ~ 283 (284)
T KOG1620|consen 283 D 283 (284)
T ss_pred c
Confidence 5
No 4
>KOG1621|consensus
Probab=100.00 E-value=5.5e-44 Score=332.05 Aligned_cols=219 Identities=30% Similarity=0.501 Sum_probs=185.5
Q ss_pred cccccCCCCccCCcccceeec-CCceEEeeecCCCCChHHHHHHHHHhcCCCchhhhccccccccceeeeeeccCCCcee
Q psy1900 31 AEQVGGHEFIAGKQTMSMLKD-KDGHVLKYINKPILGERETKFYEVLQSTEDPELLKLKKFVPQYFGTTTLKMSNQDVKF 109 (293)
Q Consensus 31 ~~QVaGH~~~~g~~~~~~l~~-~~g~i~Kp~~~~~~g~~E~~FYe~l~~~~d~~~~~L~~fiP~y~G~~~~~~~~~~~~~ 109 (293)
+.|.+||. |.++. .+|+|+|.+- ..|-..|++|+.+ .|+.|+|+|||.++- ++..|
T Consensus 186 WVQLsGH~--------Gsf~aat~g~ilKk~c-----~~E~r~l~~lmkD------aLrgfvPayyg~vek----dge~f 242 (458)
T KOG1621|consen 186 WVQLSGHE--------GSFVAATPGTILKKQC-----AGEGRALKNLMKD------ALRGFVPAYYGEVEK----DGEHF 242 (458)
T ss_pred heeecccc--------cccccCCCcchHHHhc-----chhHHHHHHHhHh------hhcccChhhhhhhhh----chhHH
Confidence 47999996 56665 8899999974 6999999999863 899999999999875 67799
Q ss_pred eeehhhhhcCCcceEEEeeecceeC-------------------------CCCCCHH--HHHHHHhh--hh------cCC
Q psy1900 110 LILSNLIGDLHEPRVMDIKIGYQTH-------------------------EPGAPKE--KVLAEESK--YA------GTK 154 (293)
Q Consensus 110 i~LEdLt~g~~~PcIlDlKmG~rt~-------------------------~~~as~e--K~~r~~~K--~~------~Ts 154 (293)
|.||||+.+|..|||||+|||+||| +++|+.| +.++...| |. +++
T Consensus 243 ~qieDLL~~F~~P~iMDcKmG~RTyLEeElskarkrp~lRkDmYeKMvavDp~aPTeEE~aqgAvTKpRYMQwRE~~SST 322 (458)
T KOG1621|consen 243 IQIEDLLQQFHDPAIMDCKMGTRTYLEEELSKARKRPKLRKDMYEKMVAVDPDAPTEEERAQGAVTKPRYMQWRERESST 322 (458)
T ss_pred HHHHHHHHhcCCCeeeeeecchhHHHHHHHHhhhcCcchhHHHHHHHhccCCCCCCHHHhhcccccchhhhhhhhccccc
Confidence 9999999999999999999999999 4555533 33333333 32 247
Q ss_pred CceeeEeeceeEEecCCCceeeccccccccCChhhHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHHHHHHhcC---ce
Q psy1900 155 KPWGFCIPGFQIYNKDTGKREKYGKEFGKHLKKDSVLNVFKMFVDQYSSPSVSIETVKSFLYSLKQIQSWFETQR---IY 231 (293)
Q Consensus 155 ~~lGfRi~G~~v~~~~~~~~~~~~K~~Gr~lt~e~~~~~l~~Ff~~~~~~~r~~~~l~~~l~~L~~L~~~~e~~~---~~ 231 (293)
++|||||.|++- .+|. .+|+|.++.|.|+|..+|..||... |. ++++++++|++||..+|-.. .+
T Consensus 323 atLGFRIEgiKk---~dG~---~~~nFKktrt~EqVt~~f~dF~~g~----~~--vlq~yi~rLk~mR~alE~S~FF~~H 390 (458)
T KOG1621|consen 323 ATLGFRIEGIKK---LDGA---LEKNFKKTRTVEQVTTTFMDFFGGQ----RS--VLQQYIERLKSMRKALEHSSFFNSH 390 (458)
T ss_pred ceeeeeeeehhh---hcch---hhhcchhhhhHHHHHHHHHHHhccc----HH--HHHHHHHHHHHHHHHhhhccccccc
Confidence 899999999984 3454 5689999999999999999999865 33 89999999999999998754 56
Q ss_pred EEeeeeEEEEEeCCC-ceEEEeecCCcCCCCC------------CCCChhHHHHHHHHHHHHHHHH
Q psy1900 232 HFYSSSLLFSYDEHK-AYVHMIDFAHVVPATD------------NNLDSNYLGGLNNIIKLFQTIL 284 (293)
Q Consensus 232 ~f~sSSLLivyD~~~-~~vrlIDFAh~~~~~~------------~~~D~g~l~GL~nLi~il~~il 284 (293)
..+|||||||+|... +.|||||||++.+.++ ++.++|||.||+||+.||+++-
T Consensus 391 EVvGSSlLfVhD~~~~agvWMIDFgKtsplP~gqtL~Hr~pW~eGNrEDGYL~GldNlv~IL~eL~ 456 (458)
T KOG1621|consen 391 EVVGSSLLFVHDTEKRAGVWMIDFGKTSPLPNGQTLNHRTPWIEGNREDGYLIGLDNLVKILEELP 456 (458)
T ss_pred ccccceEEEEeecccccceEEEeccccccCCCCccccCcCCcCCCCccCceeechhhHHHHHHhcc
Confidence 899999999999998 9999999999987653 6899999999999999999874
No 5
>PF01504 PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase; InterPro: IPR002498 This entry represents a conserved region from the common kinase core found in the type I phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family as described in []. This region is found in I, II and III phosphatidylinositol-4-phosphate 5-kinases (PIP5K enzymes). PIP5K catalyses the formation of phosphoinositol-4,5-bisphosphate via the phosphorylation of phosphatidylinositol-4-phosphate a precursor in the phosphinositide signalling pathway.; GO: 0016307 phosphatidylinositol phosphate kinase activity, 0046488 phosphatidylinositol metabolic process; PDB: 1BO1_A 2GK9_C 2YBX_B.
Probab=93.26 E-value=0.19 Score=46.28 Aligned_cols=77 Identities=18% Similarity=0.325 Sum_probs=44.3
Q ss_pred eeecCC-ceEEeeecCCCCChHHHHHHHHHhcCCCchh-hhccccccccceeeeee-ccC-CCceeeeehhhhhc-CCcc
Q psy1900 48 MLKDKD-GHVLKYINKPILGERETKFYEVLQSTEDPEL-LKLKKFVPQYFGTTTLK-MSN-QDVKFLILSNLIGD-LHEP 122 (293)
Q Consensus 48 ~l~~~~-g~i~Kp~~~~~~g~~E~~FYe~l~~~~d~~~-~~L~~fiP~y~G~~~~~-~~~-~~~~~i~LEdLt~g-~~~P 122 (293)
++...| ..|+|-+. ..|..+...+...--.-. ..-..++|+++|...+. ..+ ....||+|||+.+. ..-.
T Consensus 22 F~~T~D~kfiiKti~-----~~E~~~l~~~lp~Y~~~~~~~~~SlL~r~~Gl~~i~~~~~~~~~~fvVM~N~f~~~~~i~ 96 (252)
T PF01504_consen 22 FFFTSDGKFIIKTIS-----KSEFKFLLKILPAYFEHMSENPNSLLPRFYGLYSIKKSNGKEKIYFVVMENLFYTPRNIH 96 (252)
T ss_dssp EEE-TTSSEEEEEE------HHHHHHHHHHHHHHHHHHHHTTTSSS--EEEEEEE-EETT-EEEEEEEEE-SS-SSS--S
T ss_pred EEEeCCCCEEEEeCC-----HHHHHHHHHHHHHHHHHHHhCcCchHHHHHHHheecccCCceeEEEEEECCCccCCcccc
Confidence 444444 46999996 899998877632100000 01127899999999994 444 56799999999988 4455
Q ss_pred eEEEeee
Q psy1900 123 RVMDIKI 129 (293)
Q Consensus 123 cIlDlKm 129 (293)
..=|||=
T Consensus 97 ~~yDLKG 103 (252)
T PF01504_consen 97 ERYDLKG 103 (252)
T ss_dssp EEEEE--
T ss_pred eEEecCC
Confidence 6777774
No 6
>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate. CD alignment includes type II phosphatidylinositol phosphate kinases (PIPKII-beta), type I andII PIPK (-alpha, -beta, and -gamma) kinases and related yeast Fab1p and Mss4p kinases. Signaling by phosphorylated species of phosphatidylinositol regulates secretion, vesicular trafficking, membrane translocation, cell adhesion, chemotaxis, DNA synthesis, and cell cycling. The catalytic core domains of PIPKs are structurally similar to PI3K, PI4K, and cAMP-dependent protein kinases (PKA), the dimerization region is a unique feature of the PIPKs.
Probab=93.22 E-value=0.25 Score=47.04 Aligned_cols=162 Identities=19% Similarity=0.263 Sum_probs=92.7
Q ss_pred eeec-CCceEEeeecCCCCChHHHHHHHHHhcCCCc--hhhhccccccccceeeeeecc---CCCceeeeehhhhhc-CC
Q psy1900 48 MLKD-KDGHVLKYINKPILGERETKFYEVLQSTEDP--ELLKLKKFVPQYFGTTTLKMS---NQDVKFLILSNLIGD-LH 120 (293)
Q Consensus 48 ~l~~-~~g~i~Kp~~~~~~g~~E~~FYe~l~~~~d~--~~~~L~~fiP~y~G~~~~~~~---~~~~~~i~LEdLt~g-~~ 120 (293)
++.. ++..|+|-++ ..|.+|...+-..--. ...+..-++|+|+|...+... +....||+|+||-++ ..
T Consensus 103 F~~T~D~rfiIKti~-----~~E~~~l~~~Lp~Y~~~~~~n~~~TLL~k~~Gl~~i~~~~~~~~~~~fvVM~Nlf~~~~~ 177 (313)
T cd00139 103 FYKTLDDRFIIKTVS-----HSEIESLLKFLPNYYEYITQNPQNTLLPKFFGLYRVKVKSGTGKKVDFLVMENLFYSRLK 177 (313)
T ss_pred EEEecCCcEEEEecC-----HHHHHHHHHHHHHHHHHHHhCCCCcchhhheEEEEEEEcCCCCceEEEEEEecCCCCCcc
Confidence 4444 5556999997 8999998877322000 001125788999999999776 566789999999987 33
Q ss_pred cceEEEeeecceeCCCCCCHHHHHHHHhhhhcCCCceeeEeeceeEEecCCCceeeccccccccCChhhHHHHHHhcccC
Q psy1900 121 EPRVMDIKIGYQTHEPGAPKEKVLAEESKYAGTKKPWGFCIPGFQIYNKDTGKREKYGKEFGKHLKKDSVLNVFKMFVDQ 200 (293)
Q Consensus 121 ~PcIlDlKmG~rt~~~~as~eK~~r~~~K~~~Ts~~lGfRi~G~~v~~~~~~~~~~~~K~~Gr~lt~e~~~~~l~~Ff~~ 200 (293)
--.+=|||=-+ ++..+++. ...+......|.+| .+....-+..
T Consensus 178 i~~~yDLKGS~--~~R~~~~~--------------------------~~~~~~~vlKD~df---------~~~~~~~i~l 220 (313)
T cd00139 178 IHRKYDLKGST--RNREASKK--------------------------EKQKENPVLKDLNL---------LEMIEQPLFV 220 (313)
T ss_pred ceEEEECCCCC--CCCCcCcc--------------------------cccCCccccchhhh---------HhhcCceEEe
Confidence 33455665221 22222211 00011122223333 2222112222
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHhcCceEEeeeeEEEEEeCCC--ceEEEeecCCcCCC
Q psy1900 201 YSSPSVSIETVKSFLYSLKQIQSWFETQRIYHFYSSSLLFSYDEHK--AYVHMIDFAHVVPA 260 (293)
Q Consensus 201 ~~~~~r~~~~l~~~l~~L~~L~~~~e~~~~~~f~sSSLLivyD~~~--~~vrlIDFAh~~~~ 260 (293)
+. +.-..++++|++=-++++++. +.==|||+-.+... +-+=+||+=..+..
T Consensus 221 ~~------~~k~~l~~qL~~D~~FL~~~~---iMDYSLLvGi~~~~~i~~~GIID~L~~y~~ 273 (313)
T cd00139 221 GE------HSKKALLTQIKRDCEFLESLN---IMDYSLLVGIHDIRLVLYLGIIDILRTYTW 273 (313)
T ss_pred CH------HHHHHHHHHHHHHHHHHHHCC---CcccceEEEEecCCceEEEEEEeeeeeCCH
Confidence 21 234667788877667887743 44558888777654 77889999766544
No 7
>smart00330 PIPKc Phosphatidylinositol phosphate kinases.
Probab=92.48 E-value=0.32 Score=46.87 Aligned_cols=72 Identities=24% Similarity=0.362 Sum_probs=50.6
Q ss_pred CCceEEeeecCCCCChHHHHHHHHHhcCCCc--hhhhccccccccceeeeeeccCC---Cceeeeehhhhh-cCCcceEE
Q psy1900 52 KDGHVLKYINKPILGERETKFYEVLQSTEDP--ELLKLKKFVPQYFGTTTLKMSNQ---DVKFLILSNLIG-DLHEPRVM 125 (293)
Q Consensus 52 ~~g~i~Kp~~~~~~g~~E~~FYe~l~~~~d~--~~~~L~~fiP~y~G~~~~~~~~~---~~~~i~LEdLt~-g~~~PcIl 125 (293)
++..|+|-+. ..|..+...+...--. ...+ .-++|+++|...+...+. ...||+|+||-+ +..-..+-
T Consensus 81 D~rfiiKti~-----~~E~~~l~~~lp~Y~~~~~~n~-~SlL~ki~Gly~i~~~~~~~~~~~fiVM~NlF~~~~~i~~~y 154 (342)
T smart00330 81 DDRFIIKTVS-----KSEIKSLLPMLPNYYEHIVQNP-NTLLPKFFGLYRVKVKGGTEKKIYFLVMENLFYSDLKVHRKY 154 (342)
T ss_pred CCcEEEEecC-----HHHHHHHHHHHHHHHHHHHhCC-CcchhhhcEEEEEEECCCcceeEEEEEEecCCCCCCceeEEE
Confidence 4556999996 8999988776422000 0011 578999999999876655 568999999998 55555567
Q ss_pred Eeee
Q psy1900 126 DIKI 129 (293)
Q Consensus 126 DlKm 129 (293)
|||=
T Consensus 155 DLKG 158 (342)
T smart00330 155 DLKG 158 (342)
T ss_pred ECCC
Confidence 7773
No 8
>PF02958 EcKinase: Ecdysteroid kinase; InterPro: IPR004119 This family includes proteins of unknown function. All known members of this group are proteins from drosophila and Caenorhabditis elegans.
Probab=88.06 E-value=0.37 Score=44.36 Aligned_cols=41 Identities=27% Similarity=0.476 Sum_probs=30.7
Q ss_pred EEeeeeEEEEEeCCC--ceEEEeecCCcCCCCCCCCChhHHHHH
Q psy1900 232 HFYSSSLLFSYDEHK--AYVHMIDFAHVVPATDNNLDSNYLGGL 273 (293)
Q Consensus 232 ~f~sSSLLivyD~~~--~~vrlIDFAh~~~~~~~~~D~g~l~GL 273 (293)
-++..=+||=||+.. .++.+|||.=+.... +..|-.|+...
T Consensus 221 D~w~nNilf~~~~~g~~~~~~liDfQ~~~~g~-p~~Dl~~fl~~ 263 (294)
T PF02958_consen 221 DFWTNNILFKYDDDGKPIDVVLIDFQLARYGS-PAIDLAYFLYT 263 (294)
T ss_pred ccCHHhEeEccccccccccceeeccccccCCC-cHhHHHHHHHH
Confidence 456778899998764 899999999888776 45666665544
No 9
>KOG0229|consensus
Probab=86.94 E-value=1.3 Score=43.70 Aligned_cols=84 Identities=20% Similarity=0.277 Sum_probs=56.4
Q ss_pred ecCCceEEeeecCCCCChHHHHHHHHHhcCCC--chhhhccccccccceeeeeeccC-CCceeeeehhhhhcC-CcceEE
Q psy1900 50 KDKDGHVLKYINKPILGERETKFYEVLQSTED--PELLKLKKFVPQYFGTTTLKMSN-QDVKFLILSNLIGDL-HEPRVM 125 (293)
Q Consensus 50 ~~~~g~i~Kp~~~~~~g~~E~~FYe~l~~~~d--~~~~~L~~fiP~y~G~~~~~~~~-~~~~~i~LEdLt~g~-~~PcIl 125 (293)
+.++..|.|-++ ..|++|-..+-..-. .....=+-++|+|+|...+...+ +...|++|.||...= .-=..-
T Consensus 148 S~DdrFiIKTv~-----~~E~~~l~~mLp~Yy~~v~~~~~~TLl~kf~Gly~vk~~gg~k~yfvVM~Nlf~~~~~iH~ky 222 (420)
T KOG0229|consen 148 SYDDRFIIKTVR-----KSEVKVLLKMLPGYYQHVVEQNNRTLLPKFFGLYRVKPDGGKKIYFVVMNNLFPSRLKVHRKY 222 (420)
T ss_pred ecCceEEEEecc-----HHHHHHHHHHHHHHHHHHHccCCceeehhhceeEEEeeCCCceEEEEEecccCCCccceeEEe
Confidence 337778999997 899998777522100 00112246899999999998854 788999999997653 444677
Q ss_pred EeeecceeCCCCCCH
Q psy1900 126 DIKIGYQTHEPGAPK 140 (293)
Q Consensus 126 DlKmG~rt~~~~as~ 140 (293)
|||= .|++..|+.
T Consensus 223 DLKG--St~~R~ask 235 (420)
T KOG0229|consen 223 DLKG--STVGREASK 235 (420)
T ss_pred ecCC--Ccccccccc
Confidence 7773 344444544
No 10
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=82.52 E-value=3.3 Score=44.07 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=47.6
Q ss_pred CCceEEeeecCCCCChHHHHHHHHHhcCCCc-hhhhccccccccceeeeeec-cCCCceeeeehhhhhcC-CcceEEEee
Q psy1900 52 KDGHVLKYINKPILGERETKFYEVLQSTEDP-ELLKLKKFVPQYFGTTTLKM-SNQDVKFLILSNLIGDL-HEPRVMDIK 128 (293)
Q Consensus 52 ~~g~i~Kp~~~~~~g~~E~~FYe~l~~~~d~-~~~~L~~fiP~y~G~~~~~~-~~~~~~~i~LEdLt~g~-~~PcIlDlK 128 (293)
++..|+|-++ ..|.++...+...-.. -...-.-++|+|+|...+.. +++...||+|+||-..- .--..-|||
T Consensus 456 D~rFiIKTI~-----k~E~~~l~~iLp~Y~~hv~~n~~TLL~kf~Gl~~i~~~~g~k~~fvVM~NlF~~~~~I~~~yDLK 530 (765)
T PLN03185 456 DDRFMIKTLR-----KSEVKVLLRMLPDYHHHVKTYENTLITKFFGLHRIKPSSGQKFRFVVMGNMFCTELRIHRRFDLK 530 (765)
T ss_pred CCcEEEEecC-----HHHHHHHHHHHHHHHHHHhhCCCcchhhheEEEEEEeCCCcEEEEEEEecCCCCCCccceEEECC
Confidence 5567999997 8999988777422000 00011367999999999865 45567899999997642 222356666
No 11
>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=81.55 E-value=1.1 Score=45.24 Aligned_cols=90 Identities=19% Similarity=0.221 Sum_probs=57.6
Q ss_pred cccccCCCCccCCcccceeec-CCceEEeeecCCCCChHHHHHHHHHhcCC--CchhhhccccccccceeeeeeccC---
Q psy1900 31 AEQVGGHEFIAGKQTMSMLKD-KDGHVLKYINKPILGERETKFYEVLQSTE--DPELLKLKKFVPQYFGTTTLKMSN--- 104 (293)
Q Consensus 31 ~~QVaGH~~~~g~~~~~~l~~-~~g~i~Kp~~~~~~g~~E~~FYe~l~~~~--d~~~~~L~~fiP~y~G~~~~~~~~--- 104 (293)
+-+.||-++. .++.. +..+|+|-+. ..|..+++-....- ..-..++ -++.++||...+....
T Consensus 369 ~E~~~GKSGS------ff~~trD~kfIiKti~-----hsE~~~~r~~~~eY~~~V~~np~-T~l~ki~G~yrv~~~~s~~ 436 (612)
T COG5253 369 WESNGGKSGS------FFLFTRDYKFIIKTIS-----HSEHICFRPMIFEYYVHVLFNPL-TLLCKIFGFYRVKSRSSIS 436 (612)
T ss_pred eccCCCcccc------eEEEeccchhhhhhhh-----hhhHHHHHHHHHHHHHHHHcCch-HHHHHHhceeEEecccccc
Confidence 3455666531 45555 5567999886 56655433331110 0001345 7889999998886533
Q ss_pred ----CCceeeeehhhhhcCCcceEEEeeecce
Q psy1900 105 ----QDVKFLILSNLIGDLHEPRVMDIKIGYQ 132 (293)
Q Consensus 105 ----~~~~~i~LEdLt~g~~~PcIlDlKmG~r 132 (293)
....||+||||.++-.---|-|||=-+|
T Consensus 437 ~~k~~K~~fiVMeNlf~~~~i~~ifDLKGS~~ 468 (612)
T COG5253 437 SSKSRKIYFIVMENLFYPHGIHRIFDLKGSMR 468 (612)
T ss_pred ccccceeEEEEecccCCCCCcceEEeccCchh
Confidence 3468999999999888667899997666
No 12
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=63.28 E-value=5.3 Score=34.91 Aligned_cols=33 Identities=24% Similarity=0.550 Sum_probs=27.4
Q ss_pred hHHHHHHHHHhcC-CCchhhhccccccccceeee
Q psy1900 67 ERETKFYEVLQST-EDPELLKLKKFVPQYFGTTT 99 (293)
Q Consensus 67 ~~E~~FYe~l~~~-~d~~~~~L~~fiP~y~G~~~ 99 (293)
.+|.+||+.+... .||......+-+|.|||.--
T Consensus 116 ~Ke~eF~~rIkknRvDps~qS~sNPvPDYYGEKI 149 (173)
T PF08566_consen 116 AKEKEFLARIKKNRVDPSSQSFSNPVPDYYGEKI 149 (173)
T ss_pred HHHHHHHHHHHHcCCCccccccCCCCCchhhhhh
Confidence 7999999999766 46666778888999999843
No 13
>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.
Probab=60.00 E-value=9.6 Score=33.48 Aligned_cols=41 Identities=27% Similarity=0.464 Sum_probs=29.4
Q ss_pred EEEEeCCCceEEEeecCCcCCCCCCCCChhHHHHHHHHHHHHHH
Q psy1900 239 LFSYDEHKAYVHMIDFAHVVPATDNNLDSNYLGGLNNIIKLFQT 282 (293)
Q Consensus 239 LivyD~~~~~vrlIDFAh~~~~~~~~~D~g~l~GL~nLi~il~~ 282 (293)
.++.|+ ++.+|||..+....++...+=+.--++|+++.|+.
T Consensus 138 Ilv~~~---~~~iIDf~qav~~~~p~a~~~l~RDi~ni~~fF~~ 178 (188)
T PF01163_consen 138 ILVDDG---KVYIIDFGQAVDSSHPNAEELLRRDIENIIRFFKK 178 (188)
T ss_dssp EEEETT---CEEE--GTTEEETTSTTHHHHHHHHHHHHHHHHHC
T ss_pred EEeecc---eEEEEecCcceecCCccHHHHHHHHHHHHHHHHHH
Confidence 344444 89999999999888555566677789999998864
No 14
>KOG0230|consensus
Probab=55.75 E-value=9.4 Score=43.24 Aligned_cols=81 Identities=14% Similarity=0.243 Sum_probs=56.2
Q ss_pred ceeec-CCceEEeeecCCCCChHHHHHHHHHhcCC-----Cchhhhccccccccceeeeeecc----C--CCceeeeehh
Q psy1900 47 SMLKD-KDGHVLKYINKPILGERETKFYEVLQSTE-----DPELLKLKKFVPQYFGTTTLKMS----N--QDVKFLILSN 114 (293)
Q Consensus 47 ~~l~~-~~g~i~Kp~~~~~~g~~E~~FYe~l~~~~-----d~~~~~L~~fiP~y~G~~~~~~~----~--~~~~~i~LEd 114 (293)
.+++. +|..|+|-+. ..|++-+.....+- +.-...+--.+.|-+|+.++... + ....-++|||
T Consensus 1370 ~F~KTlDDRFIiKq~s-----k~EleSFikFAP~YFkYl~~s~~~~~PT~LAKIlGiyqV~vK~~~sgke~K~DvmVMEN 1444 (1598)
T KOG0230|consen 1370 FFAKTLDDRFIIKQMS-----KTELESFIKFAPAYFKYLTESISQKSPTCLAKILGIYQVSVKSPKSGKETKMDVMVMEN 1444 (1598)
T ss_pred eeeccccchhhhhhcc-----HHHHHHHHhhhHHHHHHHHHHHhcCCcchhhhhheeEEEEEecCCCCceeEeeeeeehh
Confidence 56775 8888999997 79988766552110 00012233456788899988653 2 2246899999
Q ss_pred hhhcCCcceEEEeeecce
Q psy1900 115 LIGDLHEPRVMDIKIGYQ 132 (293)
Q Consensus 115 Lt~g~~~PcIlDlKmG~r 132 (293)
|.++-.--.|-|||=-.|
T Consensus 1445 LfY~r~vsRifDLKGS~R 1462 (1598)
T KOG0230|consen 1445 LFYGRKVSRIFDLKGSLR 1462 (1598)
T ss_pred hhhccccceeeeccchhh
Confidence 999999889999996555
No 15
>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.
Probab=52.20 E-value=11 Score=33.58 Aligned_cols=43 Identities=23% Similarity=0.232 Sum_probs=31.2
Q ss_pred eEEEEEeCCCceEEEeecCCcCCCCCCCCChhHHHHHHHHHHHHHH
Q psy1900 237 SLLFSYDEHKAYVHMIDFAHVVPATDNNLDSNYLGGLNNIIKLFQT 282 (293)
Q Consensus 237 SLLivyD~~~~~vrlIDFAh~~~~~~~~~D~g~l~GL~nLi~il~~ 282 (293)
+=+++.++ ++++|||.++...+++...+=+.-=++|+.+.|+.
T Consensus 154 ~NIL~~~~---~v~iIDF~qav~~~hp~a~~~l~RD~~ni~~fF~~ 196 (197)
T cd05146 154 YNMLWHDG---KVWFIDVSQSVEPTHPHGLEFLFRDCRNVIQFFQK 196 (197)
T ss_pred HHEEEECC---cEEEEECCCceeCCCCCHHHHHHHHHHHHHHHhcC
Confidence 33444554 69999999999988666566666678888887753
No 16
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=39.57 E-value=36 Score=32.35 Aligned_cols=37 Identities=24% Similarity=0.421 Sum_probs=31.1
Q ss_pred ceEEEeecCCcCCCCCCCCChhHHHHHHHHHHHHHHH
Q psy1900 247 AYVHMIDFAHVVPATDNNLDSNYLGGLNNIIKLFQTI 283 (293)
Q Consensus 247 ~~vrlIDFAh~~~~~~~~~D~g~l~GL~nLi~il~~i 283 (293)
.++.+|||.++.+..++..++-+---|+|++..|+.-
T Consensus 239 g~~~vIDwPQ~v~~~hp~a~e~l~RDv~nii~yFrrk 275 (304)
T COG0478 239 GDIVVIDWPQAVPISHPDAEELLERDVENIIKYFRRK 275 (304)
T ss_pred CCEEEEeCcccccCCCCCHHHHHHhHHHHHHHHHHHh
Confidence 4799999999999887666777777899999998754
No 17
>PF07914 DUF1679: Protein of unknown function (DUF1679); InterPro: IPR012877 This region is found in a number of Caenorhabditis elegans and Caenorhabditis briggsae proteins, in one case (Q19034 from SWISSPROT) as a repeat. In many of the family members, this region is associated with the CHK region described by SMART as being found in zinc finger-C4 and HLH domain-containing kinases. In fact, one member of this family (Q9GUC1 from SWISSPROT) is annotated as being a member of the nuclear hormone receptor family, and contains regions typical of such proteins (IPR000536 from INTERPRO, IPR008946 from INTERPRO, and IPR001628 from INTERPRO).
Probab=39.07 E-value=33 Score=33.90 Aligned_cols=68 Identities=18% Similarity=0.294 Sum_probs=44.6
Q ss_pred EEeeecCCCCChHHHHHHHHHhcCCCchhhhccccccccceeeeeeccCCCceeeeehhhhhcCCcceEEEeeecceeCC
Q psy1900 56 VLKYINKPILGERETKFYEVLQSTEDPELLKLKKFVPQYFGTTTLKMSNQDVKFLILSNLIGDLHEPRVMDIKIGYQTHE 135 (293)
Q Consensus 56 i~Kp~~~~~~g~~E~~FYe~l~~~~d~~~~~L~~fiP~y~G~~~~~~~~~~~~~i~LEdLt~g~~~PcIlDlKmG~rt~~ 135 (293)
+++.+. .+|..||+.+....+| .--+|++|-...+...+....+|+||.+-..... -..
T Consensus 108 ~l~~~H-----NrEv~~Y~~~~k~~~~-----~l~~PKvY~~k~f~~en~~kG~IimE~ven~~~~-----------~~~ 166 (414)
T PF07914_consen 108 FLREMH-----NREVNFYKIFEKFNHP-----NLPYPKVYFGKKFDEENKLKGFIIMEYVENVHSM-----------DMY 166 (414)
T ss_pred HHHHhh-----HHHHHHHHHHHhcCCC-----CCCCCceeEEEecCCCCCCCCEEEEeccCCceee-----------ccc
Confidence 455554 7999999999654211 1237999988887654455689999987643322 334
Q ss_pred CCCCHHHHH
Q psy1900 136 PGAPKEKVL 144 (293)
Q Consensus 136 ~~as~eK~~ 144 (293)
++.+++-..
T Consensus 167 e~~~~eql~ 175 (414)
T PF07914_consen 167 ENLSVEQLL 175 (414)
T ss_pred CCCCHHHHH
Confidence 677776653
No 18
>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP. PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].
Probab=38.72 E-value=51 Score=29.21 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=23.2
Q ss_pred hHHHHHHHHHh-cCCCchhhhccccccccceeeee
Q psy1900 67 ERETKFYEVLQ-STEDPELLKLKKFVPQYFGTTTL 100 (293)
Q Consensus 67 ~~E~~FYe~l~-~~~d~~~~~L~~fiP~y~G~~~~ 100 (293)
.+|+..|..+. .. ...-.++|+|||.++-
T Consensus 59 ~~E~~~y~~l~~~~-----~~~~~~i~r~~G~veT 88 (199)
T PF10707_consen 59 RRELRYYKQLSLRR-----GVDWSHIPRFYGFVET 88 (199)
T ss_pred HHHHHHHHHHhhcc-----CCcccccccEeEEEec
Confidence 58999999997 43 4556889999999874
No 19
>PF13575 DUF4135: Domain of unknown function (DUF4135)
Probab=26.13 E-value=2.1e+02 Score=27.58 Aligned_cols=104 Identities=17% Similarity=0.258 Sum_probs=60.0
Q ss_pred CCCCccccccccCCCCccCCcccceeecCCc-e-EEeeecCCCCChHHHHHHHHHhcCC--C-chhhhcc--ccccc-c-
Q psy1900 24 PQGTELLAEQVGGHEFIAGKQTMSMLKDKDG-H-VLKYINKPILGERETKFYEVLQSTE--D-PELLKLK--KFVPQ-Y- 94 (293)
Q Consensus 24 ~~~l~~f~~QVaGH~~~~g~~~~~~l~~~~g-~-i~Kp~~~~~~g~~E~~FYe~l~~~~--d-~~~~~L~--~fiP~-y- 94 (293)
+..++...-.. |=...+|++. .+|.+++| . |+||-. -..|..|++-+.--. . .+...|+ +.+++ =
T Consensus 42 ~~~i~~I~~~~-GD~H~~Gr~V-~~l~f~~g~kivYKPRs----l~~d~~f~~l~~~ln~~~~~~~~~l~~~~~l~~g~~ 115 (370)
T PF13575_consen 42 PGKITSIEFGL-GDTHNGGRSV-AILEFSSGKKIVYKPRS----LSIDKAFNDLLEWLNEKNGTPSLDLPTPKVLDRGDG 115 (370)
T ss_pred CCCceEecCCC-CCcCCCCceE-EEEEECCCCEEEEeCcc----cHHHHHHHHHHHHHhhhccccccccccceeeeccCc
Confidence 34455444332 3222235543 67777676 4 899974 268888886663211 1 1112344 66665 4
Q ss_pred ceeeeeeccC--C----------------------CceeeeehhhhhcCCcceEEEeeeccee
Q psy1900 95 FGTTTLKMSN--Q----------------------DVKFLILSNLIGDLHEPRVMDIKIGYQT 133 (293)
Q Consensus 95 ~G~~~~~~~~--~----------------------~~~~i~LEdLt~g~~~PcIlDlKmG~rt 133 (293)
||+.+.-... . +..=+-.|||.+.=..|+++|+--=...
T Consensus 116 YgW~EfI~~~~c~~~~ev~~yY~r~G~llal~y~L~~~DlH~ENIIa~g~~PvlIDlETlf~~ 178 (370)
T PF13575_consen 116 YGWQEFIEHEPCNSEEEVERYYYRLGVLLALLYLLNGTDLHFENIIASGEYPVLIDLETLFHP 178 (370)
T ss_pred ceeEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCcccccceEEeCCCcEEEehhhhCCc
Confidence 7887652210 0 0122566999999999999999865554
No 20
>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]
Probab=23.91 E-value=1.5e+02 Score=27.87 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=29.8
Q ss_pred EEEEeCCCceEEEeecCCcCCCCCCCCChhHHHHHHHHHHHHHH
Q psy1900 239 LFSYDEHKAYVHMIDFAHVVPATDNNLDSNYLGGLNNIIKLFQT 282 (293)
Q Consensus 239 LivyD~~~~~vrlIDFAh~~~~~~~~~D~g~l~GL~nLi~il~~ 282 (293)
++++|+ .+.+|||+.++...++..-+=..--++|+.++|..
T Consensus 198 iL~~~~---~p~iID~~QaV~~~hp~a~e~L~RDv~Ni~~fF~r 238 (268)
T COG1718 198 ILVHDG---EPYIIDVSQAVTIDHPNAFEFLERDVRNIARFFRR 238 (268)
T ss_pred eEEECC---eEEEEECccccccCCCchHHHHHHHHHHHHHHHHH
Confidence 456665 78999999999887554444555678888888753
No 21
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=22.26 E-value=2.5e+02 Score=23.82 Aligned_cols=45 Identities=16% Similarity=0.363 Sum_probs=29.6
Q ss_pred EEeeeeEEEEEeCCCceEEEeecCCcCCCCCCCCChh--HHHHHHHHHHHHH
Q psy1900 232 HFYSSSLLFSYDEHKAYVHMIDFAHVVPATDNNLDSN--YLGGLNNIIKLFQ 281 (293)
Q Consensus 232 ~f~sSSLLivyD~~~~~vrlIDFAh~~~~~~~~~D~g--~l~GL~nLi~il~ 281 (293)
-+..+.+|+.= .-.+++|||..+.-... .+.. +-.-+.||.++|+
T Consensus 150 Dl~p~Nill~~---~~~~~liDfg~~~~~~~--~~~~~~~~~~~~~~~~~~~ 196 (198)
T cd05144 150 DLSEFNILVDD---DEKIYIIDWPQMVSTDH--PNAEELLDRDVENILRFFR 196 (198)
T ss_pred CCCcccEEEcC---CCcEEEEECCccccCCC--ccHHHHHHHHHHHHHHHHh
Confidence 45677777732 35899999998865552 2333 2245778888775
Done!