Query psy1900
Match_columns 293
No_of_seqs 134 out of 602
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 19:09:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4frf_A Inositol polyphosphate 100.0 8.4E-76 2.9E-80 542.2 15.1 249 32-291 3-273 (275)
2 2iew_A Inositol polyphosphate 100.0 2.7E-72 9.2E-77 536.2 19.1 250 24-287 4-359 (363)
3 2aqx_A Predicted: inositol 1,4 100.0 1.2E-66 3.9E-71 482.1 13.7 224 28-286 14-289 (289)
4 1w2f_A Inositol-trisphosphate 100.0 3.8E-66 1.3E-70 476.5 14.0 220 31-285 3-275 (276)
5 2a98_A Inositol 1,4,5-trisphos 100.0 6.9E-63 2.4E-67 451.1 15.4 207 52-285 1-258 (259)
6 2ybx_A Phosphatidylinositol-5- 92.7 0.15 5.2E-06 48.6 6.0 86 48-140 123-212 (394)
7 2gk9_A Phosphatidylinositol-4- 91.7 0.16 5.5E-06 48.5 4.8 72 52-128 117-191 (392)
8 3owt_C Regulatory protein SIR3 60.9 2 6.9E-05 24.4 0.3 10 248-257 5-14 (27)
9 3qf7_D MRE11; ABC-ATPase, ATPa 19.1 68 0.0023 20.7 2.2 15 274-288 25-39 (50)
10 1zar_A RIO2 kinase; serine kin 17.9 97 0.0033 26.9 3.8 46 233-282 219-264 (282)
No 1
>4frf_A Inositol polyphosphate multikinase alpha; ATP grAsp, inositol phosphate kinase, transferase; 2.90A {Arabidopsis thaliana}
Probab=100.00 E-value=8.4e-76 Score=542.18 Aligned_cols=249 Identities=29% Similarity=0.523 Sum_probs=185.8
Q ss_pred ccccCCCCccCCcccceeecCCceEEeeecCCCCChHHHHHHHHHhcCCCchhhhccccccccceeeeeeccCCCceeee
Q psy1900 32 EQVGGHEFIAGKQTMSMLKDKDGHVLKYINKPILGERETKFYEVLQSTEDPELLKLKKFVPQYFGTTTLKMSNQDVKFLI 111 (293)
Q Consensus 32 ~QVaGH~~~~g~~~~~~l~~~~g~i~Kp~~~~~~g~~E~~FYe~l~~~~d~~~~~L~~fiP~y~G~~~~~~~~~~~~~i~ 111 (293)
||+||| .|+|++++|+|+||+++++||++|++||+++..+. +....|++|||+|+|+++++ +.++..||+
T Consensus 3 ~~~~Gh--------~G~l~~~~G~v~KP~~~~~rg~~E~~FYe~l~~~~-~~~~~L~~fvP~y~G~~~~~-~~~~~~~i~ 72 (275)
T 4frf_A 3 HMKDGK--------PGPLVDDKGRFFKPLQGDSRGEIEVKFYESFSSNT-EVPEHIHRYFPVYHGTQAVE-GSDGAAMMV 72 (275)
T ss_dssp -----------------------------------CCHHHHHHHHHHCT-TSCHHHHTTSCCBCCC-----------CCC
T ss_pred CCCCCC--------CCceECCCCcEEeecCCCCcchHHHHHHHHHhhCC-CchHHHHhhCcCCceeEEec-CCCCccEEE
Confidence 789999 48999989999999999999999999999997642 22356999999999999874 234568999
Q ss_pred ehhhhhcCCcceEEEeeecceeCCCCCCHHHHHHHHhhhhc-CCCceeeEeeceeEEecCCCceeeccccccccCChhhH
Q psy1900 112 LSNLIGDLHEPRVMDIKIGYQTHEPGAPKEKVLAEESKYAG-TKKPWGFCIPGFQIYNKDTGKREKYGKEFGKHLKKDSV 190 (293)
Q Consensus 112 LEdLt~g~~~PcIlDlKmG~rt~~~~as~eK~~r~~~K~~~-Ts~~lGfRi~G~~v~~~~~~~~~~~~K~~Gr~lt~e~~ 190 (293)
|||||++|++|||||||||+|||+|+||+||++++..|++. ||++||||||||+||+.+++.|.++||+|||+++.+++
T Consensus 73 LEdLt~gf~~PcVlDiKmG~Rt~~~~as~eK~~~~~~k~~~tTs~sLGfRi~Gm~vy~~~~~~~~~~dK~~Gr~l~~~~~ 152 (275)
T 4frf_A 73 LENLLAEYTKPSVMDVKMGSRTWYPDASEEYIQKCLKKDTGTTTVSSGFRISGFEVYDHKESSFWKPERKLLRGLDVDGA 152 (275)
T ss_dssp BCCGGGGCSSEEEEEEEECSSSCCTTSCHHHHHHHHHHHTTSHHHHSSEEEEEEEEEETTTTEEECCCHHHHHTCCHHHH
T ss_pred EeecccccCCCceeEeeeecEEcCCCCCHHHHHHHHHhcccccccccceEEEEEEEecCCCCcceecchhHhccCCHHHH
Confidence 99999999999999999999999999999999999999975 68899999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCc-----------chHHHHHHHHHHHHHHHHHHHhcCceEEeeeeEEEEEeCCC----------ceE
Q psy1900 191 LNVFKMFVDQYSSPS-----------VSIETVKSFLYSLKQIQSWFETQRIYHFYSSSLLFSYDEHK----------AYV 249 (293)
Q Consensus 191 ~~~l~~Ff~~~~~~~-----------r~~~~l~~~l~~L~~L~~~~e~~~~~~f~sSSLLivyD~~~----------~~v 249 (293)
.++|++||+.+.... ....+++.+|+||++|++||++|..|||||||||||||++. ++|
T Consensus 153 ~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~e~~~~~rfysSSLL~vYD~~~~~~~~~~~~~~~v 232 (275)
T 4frf_A 153 RLTLRKFVSSNSLSDTGSKPDSAFASSVYGGSHGILTQLLELKTWFENQTLYHFNSCSILMVYENESILKGNDDDARPQV 232 (275)
T ss_dssp HHHHHHTTCSCCC------CCCCCHHHHTSSTTSHHHHHHHHHHHHHHCCSEECCSEEEEEEEECCC-------CCCCEE
T ss_pred HHHHHHHhcCCccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCceEEEecceeeEecCcccccccCCCCcccE
Confidence 999999998764310 00123567999999999999999999999999999999874 899
Q ss_pred EEeecCCcCCCCCCCCChhHHHHHHHHHHHHHHHHhhhccCC
Q psy1900 250 HMIDFAHVVPATDNNLDSNYLGGLNNIIKLFQTILDDLEQGT 291 (293)
Q Consensus 250 rlIDFAh~~~~~~~~~D~g~l~GL~nLi~il~~il~~~~~~~ 291 (293)
|||||||+++.+ +++|+|||+||+|||++|++|+++.++++
T Consensus 233 rmIDFAh~~~~~-~~~D~gyl~GL~nLi~~l~~il~~~~~~~ 273 (275)
T 4frf_A 233 KLVDFAHVLDGN-GVIDHNFLGGLCSFINFIREILQSPDESA 273 (275)
T ss_dssp EEECCTTCEECC-SCCCHHHHHHHHHHHHHHHHHC-------
T ss_pred EEEECCCCCCCC-CCCCccHHHHHHHHHHHHHHHHhccccCC
Confidence 999999999877 68999999999999999999999888764
No 2
>2iew_A Inositol polyphosphate multikinase; ATP-grAsp fold related, transferase; 2.00A {Saccharomyces cerevisiae} PDB: 2if8_A*
Probab=100.00 E-value=2.7e-72 Score=536.18 Aligned_cols=250 Identities=22% Similarity=0.364 Sum_probs=197.2
Q ss_pred CCCCccccccccCCCCccCCcccceeec-CCceEEeeecCCCCChHHHHHHHHHhcCC-------Cchhhhccccccccc
Q psy1900 24 PQGTELLAEQVGGHEFIAGKQTMSMLKD-KDGHVLKYINKPILGERETKFYEVLQSTE-------DPELLKLKKFVPQYF 95 (293)
Q Consensus 24 ~~~l~~f~~QVaGH~~~~g~~~~~~l~~-~~g~i~Kp~~~~~~g~~E~~FYe~l~~~~-------d~~~~~L~~fiP~y~ 95 (293)
.+.|+||.||||||. |+|+. ++++|+||++ .+|++||+.++... ++....|++|||+|+
T Consensus 4 ~~~l~~f~hQVaGH~--------g~l~~~dg~~i~Kp~~-----~~E~~FYe~l~~~~~~~~~~~~~~~~~L~~fvP~y~ 70 (363)
T 2iew_A 4 VNNYRVLEHKAAGHD--------GTLTDGDGLLIFKPAF-----PQELEFYKAIQVRDVSRRKSSADGDAPLCSWMPTYL 70 (363)
T ss_dssp ------------------------------CCEEEEECC-----HHHHHHHHHHC------------CCCCGGGGSCCEE
T ss_pred cccCcCccccccCCc--------ceeEcCCCCEEeCcCC-----hHHHHHHHHHhhhcccccccccccchhHHhhCcccc
Confidence 357999999999995 88987 5668999997 99999999997631 112468999999999
Q ss_pred eeeeeeccCC------------------------------CceeeeehhhhhcCCcceEEEeeecceeCCCCCCHHHHHH
Q psy1900 96 GTTTLKMSNQ------------------------------DVKFLILSNLIGDLHEPRVMDIKIGYQTHEPGAPKEKVLA 145 (293)
Q Consensus 96 G~~~~~~~~~------------------------------~~~~i~LEdLt~g~~~PcIlDlKmG~rt~~~~as~eK~~r 145 (293)
|++.+..+.. ...||+|||||+||++|||||||||+|||+++||+||++|
T Consensus 71 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~LEdLt~gf~~PcVlDiKmG~Rt~~~~As~eK~~r 150 (363)
T 2iew_A 71 GVLNEGAKIEQSGDAALLKIDERLSDSTDNLDSIPVKSEKSKQYLVLENLLYGFSKPNILDIKLGKTLYDSKASLEKRER 150 (363)
T ss_dssp EEEEC-----------------------------------CCEEEEEECTTTTCSSEEEEEEEECSCCCCTTCCHHHHHH
T ss_pred eeEecccccccccchhhcccccccccCccchhcccccCCCCccEEEechhhcCCCCceEEEEEEcCEECCCCCCHHHHHH
Confidence 9998863211 4689999999999999999999999999999999999999
Q ss_pred HHhhhh-cCCCceeeEeeceeEEecC---------------CCceeeccccccccCChhhHHHHHHhcccCCCC-CcchH
Q psy1900 146 EESKYA-GTKKPWGFCIPGFQIYNKD---------------TGKREKYGKEFGKHLKKDSVLNVFKMFVDQYSS-PSVSI 208 (293)
Q Consensus 146 ~~~K~~-~Ts~~lGfRi~G~~v~~~~---------------~~~~~~~~K~~Gr~lt~e~~~~~l~~Ff~~~~~-~~r~~ 208 (293)
+.+|+. +||++||||||||+||+.. ++.|.++||+|||++|.++|.++|+.||+.+.. .....
T Consensus 151 ~~~k~~~tTs~sLGfRI~Gmkv~~~~~~~~~~~~~~~~~~~~~~y~~~dK~~Gr~lt~~~~~~~l~~Ff~~~~~~~~~~~ 230 (363)
T 2iew_A 151 MKRVSETTTSGSLGFRICGMKIQKNPSVLNQLSLEYYEEEADSDYIFINKLYGRSRTDQNVSDAIELYFNNPHLSDARKH 230 (363)
T ss_dssp HHHHHHHSHHHHHSEEEEEEEEECCHHHHHHSCGGGEECCSSCSEEEECHHHHHHCCTTTHHHHHHHHHCCTTSCHHHHH
T ss_pred HHHHhccCCccccCEEEEEEEecCCCcccccccccccccccCCceeeechHhCccCCHHHHHHHHHHHhCCCCCcHHHHH
Confidence 999986 4689999999999999982 678999999999999999999999999986321 11224
Q ss_pred HHHHHHHHHHHHHHHHHHhcCceEEeeeeEEEEEeCC-------------------------------------------
Q psy1900 209 ETVKSFLYSLKQIQSWFETQRIYHFYSSSLLFSYDEH------------------------------------------- 245 (293)
Q Consensus 209 ~~l~~~l~~L~~L~~~~e~~~~~~f~sSSLLivyD~~------------------------------------------- 245 (293)
.+++.+|+||++|++||+++. +||||||||||||++
T Consensus 231 ~~~~~~l~~L~~L~~~le~~~-~rfysSSLL~vYD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (363)
T 2iew_A 231 QLKKTFLKRLQLFYNTMLEEE-VRMISSSLLFIYEGDPERWELLNDVDKLMRDDFIDDDDDDDDNDDDDDDDAEGSSEGP 309 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-EEESSEEEEEEEECCHHHHHHTTTCCCSSCCCSCC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCC-eEEEeeeEEEEEeCCccccccccccccccccccccccccccccccccccccccccccc
Confidence 689999999999999999975 899999999999987
Q ss_pred --------CceEEEeecCCcCCCCCCCCChhHHHHHHHHHHHHHHHHhhh
Q psy1900 246 --------KAYVHMIDFAHVVPATDNNLDSNYLGGLNNIIKLFQTILDDL 287 (293)
Q Consensus 246 --------~~~vrlIDFAh~~~~~~~~~D~g~l~GL~nLi~il~~il~~~ 287 (293)
.++||||||||+++.+.+++|+|||+||+|||++|++|++.-
T Consensus 310 ~~~~~~~~~~~vrmIDFAH~~~~~~~g~D~g~l~GL~nLi~il~~i~~~~ 359 (363)
T 2iew_A 310 KDKKTTGSLSSMSLIDFAHSEITPGKGYDENVIEGVETLLDIFMKFLEHH 359 (363)
T ss_dssp -------CCEEEEEECCTTEEECTTSCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccccCCCCcceEEEEeCCCcccCCCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence 168999999999987766899999999999999999998753
No 3
>2aqx_A Predicted: inositol 1,4,5-trisphosphate 3-kinase; IP3K, ITPKB, IP3-3K, IP3-3KB, IP3, calmodu binding, transferase; HET: ATP; 2.50A {Mus musculus}
Probab=100.00 E-value=1.2e-66 Score=482.15 Aligned_cols=224 Identities=28% Similarity=0.460 Sum_probs=196.4
Q ss_pred ccccccccCCCCccCCcccceeec-CCceEEeeecCCCCChHHHHHHHHHhcCCCchhhhccccccccceeeeeeccCCC
Q psy1900 28 ELLAEQVGGHEFIAGKQTMSMLKD-KDGHVLKYINKPILGERETKFYEVLQSTEDPELLKLKKFVPQYFGTTTLKMSNQD 106 (293)
Q Consensus 28 ~~f~~QVaGH~~~~g~~~~~~l~~-~~g~i~Kp~~~~~~g~~E~~FYe~l~~~~d~~~~~L~~fiP~y~G~~~~~~~~~~ 106 (293)
...+||||||. |.++. ++|+|+||++ ++|++||++++.+ .|++|+|+|+|+++. ++
T Consensus 14 ~~~~~QvaGH~--------g~~~~~~~G~i~Kp~~-----~~E~~fYe~l~~~------~L~~fvP~y~G~~~~----~~ 70 (289)
T 2aqx_A 14 KYPWIQLAGHA--------GSFKAAANGRILKKHC-----ESEQRCLDRLMAD------VLRPFVPAYHGDVVK----DG 70 (289)
T ss_dssp EEECCCCSSCT--------TSEEECSTTEEEEECC-----HHHHHHHHHHTTS------TTGGGSCCEEEEEEE----TT
T ss_pred CCCcEEeeCCC--------CcceECCCCEEEeeCc-----HHHHHHHHHHhhh------hhHHhCchheEeecc----CC
Confidence 46789999996 56654 7899999997 8999999999753 799999999999987 56
Q ss_pred ceeeeehhhhhcCCcceEEEeeecceeCCCC-------------------------C--CHHHHHHHHhhh--------h
Q psy1900 107 VKFLILSNLIGDLHEPRVMDIKIGYQTHEPG-------------------------A--PKEKVLAEESKY--------A 151 (293)
Q Consensus 107 ~~~i~LEdLt~g~~~PcIlDlKmG~rt~~~~-------------------------a--s~eK~~r~~~K~--------~ 151 (293)
..||+|||||+||++|||||||||+|||+++ | ++||++++..|+ .
T Consensus 71 ~~~i~LEDLt~gf~~PcVmDiKmG~Rt~~~~e~~kA~~~p~~r~d~y~Kmi~~dp~apt~eek~~~~~~K~rym~~r~~~ 150 (289)
T 2aqx_A 71 ERYNQMDDLLADFDSPCVMDCKMGVRTYLEEELTKARKKPSLRKDMYQKMVEVDPEAPTEEEKAQRAVTKPRYMQWRETI 150 (289)
T ss_dssp EEEEEEECTTTTCSSCEEEEEEESSCSSCHHHHHHHTTSCCCBHHHHHHHHHHCTTCSCHHHHHHTCBCHHHHHHHHTTS
T ss_pred ceEEEehhhhcCCCCceEEEEeEeeeEcCcccchhhhccchhhhhhhhhhhccCccCCccHHHHHHHHhhhhhhhccccc
Confidence 6899999999999999999999999999987 3 567877776662 2
Q ss_pred cCCCceeeEeeceeEEecCCCceeeccccccccCChhhHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHHHHHHhcCce
Q psy1900 152 GTKKPWGFCIPGFQIYNKDTGKREKYGKEFGKHLKKDSVLNVFKMFVDQYSSPSVSIETVKSFLYSLKQIQSWFETQRIY 231 (293)
Q Consensus 152 ~Ts~~lGfRi~G~~v~~~~~~~~~~~~K~~Gr~lt~e~~~~~l~~Ff~~~~~~~r~~~~l~~~l~~L~~L~~~~e~~~~~ 231 (293)
+||+++|||||||++|+.. .+|+|||.++.+++.++|..||+.. ..+++.+|+||++|++||+++..|
T Consensus 151 tTs~~LGfRI~G~kv~~~~------~~K~~gr~~t~e~~~~~l~~F~~~~------~~i~~~~l~~L~~l~~~~e~~~~f 218 (289)
T 2aqx_A 151 SSTATLGFRIEGIKKEDGS------VNRDFKKTKTREQVTEAFREFTKGN------QNILIAYRDRLKAIRATLEISPFF 218 (289)
T ss_dssp SSHHHHSEEEEEEECTTSC------EECCCTTCCSHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcccCCEEEEEEEecCCC------CCCcccccCCHHHHHHHHHHHhcCc------HHHHHHHHHHHHHHHHHHHhCccc
Confidence 4789999999999999743 6899999999999999999999864 248899999999999999998765
Q ss_pred E---EeeeeEEEEEeCCC-ceEEEeecCCcCCCCC------------CCCChhHHHHHHHHHHHHHHHHhh
Q psy1900 232 H---FYSSSLLFSYDEHK-AYVHMIDFAHVVPATD------------NNLDSNYLGGLNNIIKLFQTILDD 286 (293)
Q Consensus 232 ~---f~sSSLLivyD~~~-~~vrlIDFAh~~~~~~------------~~~D~g~l~GL~nLi~il~~il~~ 286 (293)
+ |||||||||||++. ++||||||||+++.++ +++|+|||+||+|||++|++|+++
T Consensus 219 ~~~~f~sSSLL~vYD~~~~~~v~mIDFAh~~~~~~~~~~~h~~~~~~g~~D~gyL~GL~nLi~il~~i~~~ 289 (289)
T 2aqx_A 219 KCHEVIGSSLLFIHDKKEQAKVWMIDFGKTTPLPEGQTLQHDVPWQEGNREDGYLSGLDNLIDILTEMSQG 289 (289)
T ss_dssp HTEEECSCEEEEEECTTCCEEEEEECCTTEEECSTTCCCCSSSCCCTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred cccEEEeeeEEEEEeCCCcCcEEEEECCceeEcCCCccccCCCCccCCCCCchHHHHHHHHHHHHHHHhcC
Confidence 5 99999999999975 9999999999987542 368999999999999999999863
No 4
>1w2f_A Inositol-trisphosphate 3-kinase A; inositol phosphate kinase, transferase, calmodulin-binding; 1.8A {Homo sapiens} SCOP: d.143.1.3 PDB: 1tzd_A* 1w2d_A* 1w2c_A*
Probab=100.00 E-value=3.8e-66 Score=476.49 Aligned_cols=220 Identities=29% Similarity=0.462 Sum_probs=191.3
Q ss_pred cccccCCCCccCCcccceeec--CCceEEeeecCCCCChHHHHHHHHHhcCCCchhhhccccccccceeeeeeccCCCce
Q psy1900 31 AEQVGGHEFIAGKQTMSMLKD--KDGHVLKYINKPILGERETKFYEVLQSTEDPELLKLKKFVPQYFGTTTLKMSNQDVK 108 (293)
Q Consensus 31 ~~QVaGH~~~~g~~~~~~l~~--~~g~i~Kp~~~~~~g~~E~~FYe~l~~~~d~~~~~L~~fiP~y~G~~~~~~~~~~~~ 108 (293)
+||||||. |+|+. ++|+|+||++ ++|++||++++. ..|++|+|+|+|+++. ++..
T Consensus 3 ~~QvaGH~--------g~l~~~~~~g~i~Kp~~-----~~E~~fY~~l~~------~~L~~fvP~y~G~~~~----~~~~ 59 (276)
T 1w2f_A 3 WVQLAGHT--------GSFKAAGTSGLILKRCS-----EPERYCLARLMA------DALRGCVPAFHGVVER----DGES 59 (276)
T ss_dssp HHHHTTCC--------SCCEECSSTTEEEEECC-----HHHHHHHHHHHT------SGGGGGSCCEEEEEEE----TTEE
T ss_pred CeEEeCCC--------CceeecCCCCEEEeeCC-----HHHHHHHHHhhh------hhHHHhChhhheeecc----CCce
Confidence 58999996 77887 5899999997 899999999975 3899999999999886 5679
Q ss_pred eeeehhhhhcCCcceEEEeeecceeCCCCC-------------------------C--HHHHHHHHhhh--------hcC
Q psy1900 109 FLILSNLIGDLHEPRVMDIKIGYQTHEPGA-------------------------P--KEKVLAEESKY--------AGT 153 (293)
Q Consensus 109 ~i~LEdLt~g~~~PcIlDlKmG~rt~~~~a-------------------------s--~eK~~r~~~K~--------~~T 153 (293)
||+|||||+||++|||||||||+|||++++ | +||++++..|+ .+|
T Consensus 60 ~i~LEdLt~gf~~PcVmDiKmG~rt~~~~~~~ka~~~p~~R~~ly~km~~~dp~apt~ee~~~~~~~K~rym~~r~~~tt 139 (276)
T 1w2f_A 60 YLQLQDLLDGFDGPCVLDCKMGVRTYLEEELTKARERPKLRKDMYKKMLAVDPEAPTEEEHAQRAVTKPRYMQWREGISS 139 (276)
T ss_dssp EEEEECTTTTCSSCEEEEEEESSCCSCHHHHHHHHHSCCEEHHHHHHHHHHCTTSSCHHHHHHTCEEHHHHHHHHHHHSS
T ss_pred EEEechHhcCCCCceEEEEEEeeeecCchhhhhhccchhhhhhhhhhhhccCcCCCcHHHHHHHHHhhhhhhhhhhcccc
Confidence 999999999999999999999999998873 2 34444444453 347
Q ss_pred CCceeeEeeceeEEecCCCceeeccccccccCChhhHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHHHHHHhcCce--
Q psy1900 154 KKPWGFCIPGFQIYNKDTGKREKYGKEFGKHLKKDSVLNVFKMFVDQYSSPSVSIETVKSFLYSLKQIQSWFETQRIY-- 231 (293)
Q Consensus 154 s~~lGfRi~G~~v~~~~~~~~~~~~K~~Gr~lt~e~~~~~l~~Ff~~~~~~~r~~~~l~~~l~~L~~L~~~~e~~~~~-- 231 (293)
|+++|||||||++|+.. .+|+|||++|.+++.++|+.||+.+ ..+++.+|+||++|++||+++..|
T Consensus 140 s~~lGfRi~G~k~~~~~------~~K~~gr~~s~~~~~~~l~~F~~~~------~~i~~~~l~~L~~l~~~~e~~~~~~~ 207 (276)
T 1w2f_A 140 STTLGFRIEGIKKADGS------CSTDFKTTRSREQVLRVFEEFVQGD------EEVLRRYLNRLQQIRDTLEVSEFFRR 207 (276)
T ss_dssp HHHHSEEEEEEECTTSC------EECCCTTCCSHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHHTTCHHHHT
T ss_pred cccCCEEEEEEEccCCc------ccchhcccCCHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHHHHhCccccc
Confidence 89999999999998742 5899999999999999999999863 248999999999999999998865
Q ss_pred -EEeeeeEEEEEeCCC-ceEEEeecCCcCCCCC------------CCCChhHHHHHHHHHHHHHHHHh
Q psy1900 232 -HFYSSSLLFSYDEHK-AYVHMIDFAHVVPATD------------NNLDSNYLGGLNNIIKLFQTILD 285 (293)
Q Consensus 232 -~f~sSSLLivyD~~~-~~vrlIDFAh~~~~~~------------~~~D~g~l~GL~nLi~il~~il~ 285 (293)
+|||||||||||++. ++||||||||+++.++ +++|+|||+||+|||++|++|++
T Consensus 208 ~~f~sSSLL~vYD~~~~~~v~mIDFAh~~~~~~~~~~~h~~~~~~~~~D~gyL~GL~nLi~il~~i~~ 275 (276)
T 1w2f_A 208 HEVIGSSLLFVHDHCHRAGVWLIDFGKTTPLPDGQILDHRRPWEEGNREDGYLLGLDNLIGILASLAE 275 (276)
T ss_dssp EEEESCEEEEEECTTCCEEEEEECCTEEEECSTTCCCCSCSCCCTTSCCCCHHHHHHHHHHHHHHHHT
T ss_pred cccccceEEEEEeCCCcCcEEEEECCceEEcCCCccccCCCCccCCCCCccHHHHHHHHHHHHHHHhh
Confidence 699999999999975 9999999999986542 36899999999999999999975
No 5
>2a98_A Inositol 1,4,5-trisphosphate 3-kinase C; structural genomics, structural genomics consortium, SGC, transferase; HET: I3P; 2.60A {Homo sapiens}
Probab=100.00 E-value=6.9e-63 Score=451.10 Aligned_cols=207 Identities=29% Similarity=0.467 Sum_probs=183.8
Q ss_pred CCceEEeeecCCCCChHHHHHHHHHhcCCCchhhhccccccccceeeeeeccCCCceeeeehhhhhcCCcceEEEeeecc
Q psy1900 52 KDGHVLKYINKPILGERETKFYEVLQSTEDPELLKLKKFVPQYFGTTTLKMSNQDVKFLILSNLIGDLHEPRVMDIKIGY 131 (293)
Q Consensus 52 ~~g~i~Kp~~~~~~g~~E~~FYe~l~~~~d~~~~~L~~fiP~y~G~~~~~~~~~~~~~i~LEdLt~g~~~PcIlDlKmG~ 131 (293)
++|+|+||++ ++|++||++++. ..|++|+|+|+|+++. ++..||+|||||+||++|||||||||+
T Consensus 1 ~~g~i~K~~~-----~~E~~fY~~l~~------~~L~~fvP~y~G~~~~----~~~~~i~LEdLt~g~~~PcVmDiKmG~ 65 (259)
T 2a98_A 1 EDGRILKRFC-----QCEQRSLEQLMK------DPLRPFVPAYYGMVLQ----DGQTFNQMEDLLADFEGPSIMDCKMGS 65 (259)
T ss_dssp CCSEEEEECC-----HHHHHHHHHHTT------STTGGGSCCEEEEEEE----TTEEEEEEECTTTTCSSCEEEEEEESS
T ss_pred CCCEEeccCC-----HHHHHHHHHhhh------hhHHHhCcCceEEEEE----CCceEEEeehHhcCCCCceEEEEEEee
Confidence 4799999997 899999999974 3799999999999886 466899999999999999999999999
Q ss_pred eeCCCCC---------------------------CHHHHHHHHhhh--------hcCCCceeeEeeceeEEecCCCceee
Q psy1900 132 QTHEPGA---------------------------PKEKVLAEESKY--------AGTKKPWGFCIPGFQIYNKDTGKREK 176 (293)
Q Consensus 132 rt~~~~a---------------------------s~eK~~r~~~K~--------~~Ts~~lGfRi~G~~v~~~~~~~~~~ 176 (293)
|||++++ ++||++++..|+ .+||+++|||||||++|+..
T Consensus 66 Rt~~~~~~~~~~~~~~~r~d~y~Kmv~~dp~apt~eek~~~~~~K~rym~~re~~tTs~~lGfRI~G~k~~~~~------ 139 (259)
T 2a98_A 66 RTYLEEELVKARERPRPRKDMYEKMVAVDPGAPTPEEHAQGAVTKPRYMQWRETMSSTSTLGFRIEGIKKADGT------ 139 (259)
T ss_dssp CCSCGGGTSSTTTSCCCBHHHHHHHHTTCTTCSCHHHHHHTCBCHHHHHHHHHHHSTHHHHSEEEEEEECTTSC------
T ss_pred eecCchhhhhhcccchhhhhhhhhhhccCCCCCchHHHHHHHHHHhhhhhhhcccCccccCCEEEEeEEccCCC------
Confidence 9998763 367777777776 35789999999999998742
Q ss_pred ccccccccCChhhHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHHHHHHhcCce---EEeeeeEEEEEeCCC-ceEEEe
Q psy1900 177 YGKEFGKHLKKDSVLNVFKMFVDQYSSPSVSIETVKSFLYSLKQIQSWFETQRIY---HFYSSSLLFSYDEHK-AYVHMI 252 (293)
Q Consensus 177 ~~K~~Gr~lt~e~~~~~l~~Ff~~~~~~~r~~~~l~~~l~~L~~L~~~~e~~~~~---~f~sSSLLivyD~~~-~~vrlI 252 (293)
.+|+|||++|.+++.++|..||+.+. .+++.+|+||++|++||+++..| ||||||||||||++. ++||||
T Consensus 140 ~~K~~gr~~~~~~~~~~l~~F~~~~~------~~~~~~l~~L~~l~~~~e~~~~f~~~rf~sSSLL~vYD~~~~~~v~lI 213 (259)
T 2a98_A 140 CNTNFKKTQALEQVTKVLEDFVDGDH------VILQKYVACLEELREALEISPFFKTHEVVGSSLLFVHDHTGLAKVWMI 213 (259)
T ss_dssp EECCCTTCCSHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHHHHCHHHHTEEECSCEEEEEECTTSCEEEEEE
T ss_pred CCchhhhcCCHHHHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHhCcCccceEEEeeeEEEEEeCCCcCcEEEE
Confidence 68999999999999999999998642 48999999999999999999877 999999999999975 999999
Q ss_pred ecCCcCCCCC------------CCCChhHHHHHHHHHHHHHHHHh
Q psy1900 253 DFAHVVPATD------------NNLDSNYLGGLNNIIKLFQTILD 285 (293)
Q Consensus 253 DFAh~~~~~~------------~~~D~g~l~GL~nLi~il~~il~ 285 (293)
||||+++.++ +++|+|||+||+|||++|++|++
T Consensus 214 DFAh~~~~~~~~~~dh~~p~~~~~~D~gyL~GL~nLi~il~~i~~ 258 (259)
T 2a98_A 214 DFGKTVALPDHQTLSHRLPWAEGNREDGYLWGLDNMICLLQGLAQ 258 (259)
T ss_dssp CCTTEEECSTTCCCCSSSCCCTTTCCCCHHHHHHHHHHHHHHHHT
T ss_pred ECCceeecCCCccccCCCCcccCCCCccHHHHHHHHHHHHHHHhh
Confidence 9999986432 58999999999999999999985
No 6
>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase, signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A
Probab=92.69 E-value=0.15 Score=48.64 Aligned_cols=86 Identities=13% Similarity=0.154 Sum_probs=58.8
Q ss_pred eeec-CCceEEeeecCCCCChHHHHHHHHHhcCCCch--hhhccccccccceeeeeeccCCCceeeeehhhhhcC-Ccce
Q psy1900 48 MLKD-KDGHVLKYINKPILGERETKFYEVLQSTEDPE--LLKLKKFVPQYFGTTTLKMSNQDVKFLILSNLIGDL-HEPR 123 (293)
Q Consensus 48 ~l~~-~~g~i~Kp~~~~~~g~~E~~FYe~l~~~~d~~--~~~L~~fiP~y~G~~~~~~~~~~~~~i~LEdLt~g~-~~Pc 123 (293)
++.. ++..|+|-++ ..|.+|...+...--.- ...-.-++|+|+|...+...+....||+||||.++- .-..
T Consensus 123 F~~T~D~rfiIKti~-----~~E~~~l~~~lp~Y~~~~~~~~~~TLL~k~~Gly~v~~~~~~~~fvVM~Nlf~~~~~i~~ 197 (394)
T 2ybx_A 123 FHTSYDKRYIIKTIT-----SEDVAEMHNILKKYHQYIVECHGITLLPQFLGMYRLNVDGVEIYVIVTRNVFSHRLSVYR 197 (394)
T ss_dssp EEECTTSSEEEEEEC-----HHHHHHHHHHHHHHHHHHHHTTTCCSSCCEEEEEEEEETTEEEEEEEEECSSCSSSCCSE
T ss_pred EEEeCCCcEEEEeeC-----HHHHHHHHHHHHHHHHHHHhcCCCcChhhhcEEEEEEECCeEEEEEEEecCCCCCcceee
Confidence 4444 5567999997 89999887763210000 002246799999999998888778899999999864 4457
Q ss_pred EEEeeecceeCCCCCCH
Q psy1900 124 VMDIKIGYQTHEPGAPK 140 (293)
Q Consensus 124 IlDlKmG~rt~~~~as~ 140 (293)
.=|||=-+ ++..+++
T Consensus 198 ~yDLKGS~--~~R~~~~ 212 (394)
T 2ybx_A 198 KYDLKGST--VAREASD 212 (394)
T ss_dssp EEEECCSS--SCCCCCH
T ss_pred eeeecccc--cCCccCc
Confidence 88998433 3444443
No 7
>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma; phosphoinositide, structural genomics, structural genomics consortium, SGC, transferase; 2.80A {Homo sapiens}
Probab=91.66 E-value=0.16 Score=48.46 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=51.5
Q ss_pred CCceEEeeecCCCCChHHHHHHHHHhcCCCch--hhhccccccccceeeeeeccCCCceeeeehhhhhcC-CcceEEEee
Q psy1900 52 KDGHVLKYINKPILGERETKFYEVLQSTEDPE--LLKLKKFVPQYFGTTTLKMSNQDVKFLILSNLIGDL-HEPRVMDIK 128 (293)
Q Consensus 52 ~~g~i~Kp~~~~~~g~~E~~FYe~l~~~~d~~--~~~L~~fiP~y~G~~~~~~~~~~~~~i~LEdLt~g~-~~PcIlDlK 128 (293)
++..|+|-++ ..|.+|...+...--.- ...-.-++|+|+|...+...+....||+||||.++- .-.-.=|||
T Consensus 117 D~rfiIKti~-----~~E~~~l~~~lp~Y~~~~~~~~~~TLL~k~~Gly~v~~~~~~~~~vVM~Nlf~~~~~i~~~yDLK 191 (392)
T 2gk9_A 117 DRTLVIKEVS-----SEDIADMHSNLSNYHQYIVKCHGNTLLPQFLGMYRVSVDNEDSYMLVMRNMFSHRLPVHRKYDLK 191 (392)
T ss_dssp TSSEEEEECC-----HHHHHHHHHHHHHHHHHHHHTTSCSSSCCEEEEEECCBSSCCCEEEEEECSSCSSSCCSCCCEEC
T ss_pred CCcEEEEeeC-----HHHHHHHHHHHHHHHHHHHhhCCCcchhhhceEEEEEECCeEEEEEEEecCCCCCcceeeeeeec
Confidence 5567999997 89999887763210000 001246799999999998888888999999998864 234566777
No 8
>3owt_C Regulatory protein SIR3; RCT domain, protein binding; 2.00A {Saccharomyces cerevisiae}
Probab=60.90 E-value=2 Score=24.42 Aligned_cols=10 Identities=50% Similarity=0.773 Sum_probs=7.9
Q ss_pred eEEEeecCCc
Q psy1900 248 YVHMIDFAHV 257 (293)
Q Consensus 248 ~vrlIDFAh~ 257 (293)
+.+|||||-.
T Consensus 5 nakmidfatl 14 (27)
T 3owt_C 5 NAKMIDFATL 14 (27)
T ss_pred cceeeehHHH
Confidence 5799999853
No 9
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=19.12 E-value=68 Score=20.73 Aligned_cols=15 Identities=20% Similarity=0.740 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhhhc
Q psy1900 274 NNIIKLFQTILDDLE 288 (293)
Q Consensus 274 ~nLi~il~~il~~~~ 288 (293)
+|||.+|++++++..
T Consensus 25 e~l~k~~~ell~evk 39 (50)
T 3qf7_D 25 EKLLKILDELLDEVK 39 (50)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 689999999987753
No 10
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=17.94 E-value=97 Score=26.86 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=32.5
Q ss_pred EeeeeEEEEEeCCCceEEEeecCCcCCCCCCCCChhHHHHHHHHHHHHHH
Q psy1900 233 FYSSSLLFSYDEHKAYVHMIDFAHVVPATDNNLDSNYLGGLNNIIKLFQT 282 (293)
Q Consensus 233 f~sSSLLivyD~~~~~vrlIDFAh~~~~~~~~~D~g~l~GL~nLi~il~~ 282 (293)
+-.+-+|+- + -.+++|||.-+.........+-+-..+++++..|..
T Consensus 219 lkp~NILl~-~---~~vkl~DFG~a~~~~~~~a~e~l~rdv~~i~~~f~~ 264 (282)
T 1zar_A 219 LSQYNVLVS-E---EGIWIIDFPQSVEVGEEGWREILERDVRNIITYFSR 264 (282)
T ss_dssp CSTTSEEEE-T---TEEEECCCTTCEETTSTTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHEEEE-C---CcEEEEECCCCeECCCCCHHHHHHHHHHHHHHHHHH
Confidence 445667776 4 479999999998766433444555678899888843
Done!