RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1900
         (293 letters)



>4frf_A Inositol polyphosphate multikinase alpha; ATP grAsp, inositol
           phosphate kinase, transferase; 2.90A {Arabidopsis
           thaliana}
          Length = 275

 Score =  191 bits (487), Expect = 3e-60
 Identities = 77/278 (27%), Positives = 120/278 (43%), Gaps = 27/278 (9%)

Query: 36  GHEFIAGKQTMSMLKDKDGHVLKYINKPILGERETKFYEVLQSTEDPELLKLKKFVPQYF 95
           G     GK     L D  G   K +     GE E KFYE   S        + ++ P Y 
Sbjct: 1   GSHMKDGKP--GPLVDDKGRFFKPLQGDSRGEIEVKFYESFSS-NTEVPEHIHRYFPVYH 57

Query: 96  GTTTLKMSNQDVKFLILSNLIGDLHEPRVMDIKIGYQTHEPGAPKEKVLAEESKYAG-TK 154
           GT  ++ S+     ++L NL+ +  +P VMD+K+G +T  P A +E +     K  G T 
Sbjct: 58  GTQAVEGSDGA-AMMVLENLLAEYTKPSVMDVKMGSRTWYPDASEEYIQKCLKKDTGTTT 116

Query: 155 KPWGFCIPGFQIYNKDTGKREKYGKEFGKHLKKDSVLNVFKMFVDQYSSPSVSIETVKSF 214
              GF I GF++Y+       K  ++  + L  D      + FV   S      +   +F
Sbjct: 117 VSSGFRISGFEVYDHKESSFWKPERKLLRGLDVDGARLTLRKFVSSNSLSDTGSKPDSAF 176

Query: 215 LYS-----------LKQIQSWFETQRIYHFYSSSLLFSYDEHKAY----------VHMID 253
             S           L ++++WFE Q +YHF S S+L  Y+               V ++D
Sbjct: 177 ASSVYGGSHGILTQLLELKTWFENQTLYHFNSCSILMVYENESILKGNDDDARPQVKLVD 236

Query: 254 FAHVVPATDNNLDSNYLGGLNNIIKLFQTILDDLEQGT 291
           FAHV+   +  +D N+LGGL + I   + IL   ++  
Sbjct: 237 FAHVLD-GNGVIDHNFLGGLCSFINFIREILQSPDESA 273


>2iew_A Inositol polyphosphate multikinase; ATP-grAsp fold related,
           transferase; 2.00A {Saccharomyces cerevisiae} PDB:
           2if8_A*
          Length = 363

 Score =  151 bits (381), Expect = 2e-43
 Identities = 61/371 (16%), Positives = 113/371 (30%), Gaps = 118/371 (31%)

Query: 24  PQGTELLAEQVGGHEFIAGKQTMSMLKDKDGHVLKYINKPILGERETKFYEVLQS----- 78
                +L  +  GH+          L D DG ++    KP    +E +FY+ +Q      
Sbjct: 4   VNNYRVLEHKAAGHD--------GTLTDGDGLLIF---KP-AFPQELEFYKAIQVRDVSR 51

Query: 79  --TEDPELLKLKKFVPQYFGT------------------------------TTLKMSNQD 106
             +       L  ++P Y G                               +    S + 
Sbjct: 52  RKSSADGDAPLCSWMPTYLGVLNEGAKIEQSGDAALLKIDERLSDSTDNLDSIPVKSEKS 111

Query: 107 VKFLILSNLIGDLHEPRVMDIKIGYQTHEPGAPKEKVLAEESKYAG-TKKPWGFCIPGFQ 165
            ++L+L NL+    +P ++DIK+G   ++  A  EK    +      T    GF I G +
Sbjct: 112 KQYLVLENLLYGFSKPNILDIKLGKTLYDSKASLEKRERMKRVSETTTSGSLGFRICGMK 171

Query: 166 IYNKDT---------------GKREKYGKEFGKHLKKDSVLNVFKMFV-DQYSSPSVSIE 209
           I    +                      K +G+     +V +  +++  + + S +   +
Sbjct: 172 IQKNPSVLNQLSLEYYEEEADSDYIFINKLYGRSRTDQNVSDAIELYFNNPHLSDARKHQ 231

Query: 210 TVKSFLYSLKQIQSWFETQRIYHFYSSSLLFSYD-------------------------- 243
             K+FL  L+   +    +      SSSLLF Y+                          
Sbjct: 232 LKKTFLKRLQLFYNTML-EEEVRMISSSLLFIYEGDPERWELLNDVDKLMRDDFIDDDDD 290

Query: 244 -------------------------EHKAYVHMIDFAHVVPATDNNLDSNYLGGLNNIIK 278
                                       + + +IDFAH         D N + G+  ++ 
Sbjct: 291 DDDNDDDDDDDAEGSSEGPKDKKTTGSLSSMSLIDFAHSEITPGKGYDENVIEGVETLLD 350

Query: 279 LFQTILDDLEQ 289
           +F   L+    
Sbjct: 351 IFMKFLEHHHH 361


>2a98_A Inositol 1,4,5-trisphosphate 3-kinase C; structural genomics,
           structural genomics consortium, SGC, transferase; HET:
           I3P; 2.60A {Homo sapiens}
          Length = 259

 Score =  136 bits (344), Expect = 6e-39
 Identities = 65/284 (22%), Positives = 101/284 (35%), Gaps = 78/284 (27%)

Query: 52  KDGHVLKYINKPILGERETKFYEVLQSTEDPELLKLKKFVPQYFGTTTLKMSNQDVKFLI 111
           +DG +LK        + E +  E L    DP    L+ FVP Y+G            F  
Sbjct: 1   EDGRILKRFC-----QCEQRSLEQLMK--DP----LRPFVPAYYGMVLQ----DGQTFNQ 45

Query: 112 LSNLIGDLHEPRVMDIKIGYQTHEPGA----------------------PKEKVLAEESK 149
           + +L+ D   P +MD K+G +T+                          P      E ++
Sbjct: 46  MEDLLADFEGPSIMDCKMGSRTYLEEELVKARERPRPRKDMYEKMVAVDPGAPTPEEHAQ 105

Query: 150 YAGTKKPW-------------GFCIPGFQIYNKDTGKREKYGKEFGKHLKKDSVLNVFKM 196
            A TK  +             GF I G +  +            F K    + V  V + 
Sbjct: 106 GAVTKPRYMQWRETMSSTSTLGFRIEGIKKADGTC------NTNFKKTQALEQVTKVLED 159

Query: 197 FVDQYSSPSVSIETVKSFLYSLKQIQSWFETQ---RIYHFYSSSLLFSYD-EHKAYVHMI 252
           FVD           ++ ++  L++++   E     + +    SSLLF +D    A V MI
Sbjct: 160 FVDGDHV------ILQKYVACLEELREALEISPFFKTHEVVGSSLLFVHDHTGLAKVWMI 213

Query: 253 DFAHVVPATDN------------NLDSNYLGGLNNIIKLFQTIL 284
           DF   V   D+            N +  YL GL+N+I L Q + 
Sbjct: 214 DFGKTVALPDHQTLSHRLPWAEGNREDGYLWGLDNMICLLQGLA 257


>1w2f_A Inositol-trisphosphate 3-kinase A; inositol phosphate kinase,
           transferase, calmodulin-binding; 1.8A {Homo sapiens}
           SCOP: d.143.1.3 PDB: 1tzd_A* 1w2d_A* 1w2c_A*
          Length = 276

 Score =  136 bits (342), Expect = 2e-38
 Identities = 59/301 (19%), Positives = 95/301 (31%), Gaps = 78/301 (25%)

Query: 33  QVGGHEFIAGKQTMSMLKDKDGHVLKYINKPILGERETKFYEVLQSTEDPELLKLKKFVP 92
           Q+ GH                G +LK        E E      L +        L+  VP
Sbjct: 5   QLAGHTGSF------KAAGTSGLILK-----RCSEPERYCLARLMADA------LRGCVP 47

Query: 93  QYFGTTTLKMSNQDVKFLILSNLIGDLHEPRVMDIKIGYQTHEPGAPKEKVLAEESKYAG 152
            + G            +L L +L+     P V+D K+G +T+      +     + +   
Sbjct: 48  AFHGVVERD----GESYLQLQDLLDGFDGPCVLDCKMGVRTYLEEELTKARERPKLRKDM 103

Query: 153 TKKP-----------------------------------WGFCIPGFQIYNKDTGKREKY 177
            KK                                     GF I G +  +         
Sbjct: 104 YKKMLAVDPEAPTEEEHAQRAVTKPRYMQWREGISSSTTLGFRIEGIKKADG------SC 157

Query: 178 GKEFGKHLKKDSVLNVFKMFVDQYSSPSVSIETVKSFLYSLKQIQSWFETQRIYHFYSSS 237
             +F     ++ VL VF+ FV         +    + L  ++      E  R +    SS
Sbjct: 158 STDFKTTRSREQVLRVFEEFVQGDEE---VLRRYLNRLQQIRDTLEVSEFFRRHEVIGSS 214

Query: 238 LLFSYD-EHKAYVHMIDFAHVVPATDN------------NLDSNYLGGLNNIIKLFQTIL 284
           LLF +D  H+A V +IDF    P  D             N +  YL GL+N+I +  ++ 
Sbjct: 215 LLFVHDHCHRAGVWLIDFGKTTPLPDGQILDHRRPWEEGNREDGYLLGLDNLIGILASLA 274

Query: 285 D 285
           +
Sbjct: 275 E 275


>2aqx_A Predicted: inositol 1,4,5-trisphosphate 3-kinase; IP3K, ITPKB,
           IP3-3K, IP3-3KB, IP3, calmodu binding, transferase; HET:
           ATP; 2.50A {Mus musculus}
          Length = 289

 Score =  123 bits (309), Expect = 1e-33
 Identities = 58/303 (19%), Positives = 100/303 (33%), Gaps = 85/303 (28%)

Query: 33  QVGGHEFIAGKQTMSMLKDKDGHVLKYINKPILGERETKFYEVLQSTEDPELLKLKKFVP 92
           Q+ GH         S     +G +LK        E E +  + L +        L+ FVP
Sbjct: 19  QLAGH-------AGSFKAAANGRILK-----KHCESEQRCLDRLMADV------LRPFVP 60

Query: 93  QYFGTTTLKMSNQDVKFLILSNLIGDLHEPRVMDIKIGYQTHEPGAPKEKVLAEESKYAG 152
            Y G           ++  + +L+ D   P VMD K+G +T+      +       +   
Sbjct: 61  AYHGDVVK----DGERYNQMDDLLADFDSPCVMDCKMGVRTYLEEELTKARKKPSLRKDM 116

Query: 153 -----------------------------------TKKPWGFCIPGFQIYNKDTGKREKY 177
                                              +    GF I G +  +         
Sbjct: 117 YQKMVEVDPEAPTEEEKAQRAVTKPRYMQWRETISSTATLGFRIEGIKKEDG------SV 170

Query: 178 GKEFGKHLKKDSVLNVFKMFVDQYSSPSVSIETVKSFLYSLKQIQSWFETQ---RIYHFY 234
            ++F K   ++ V   F+ F     +       + ++   LK I++  E     + +   
Sbjct: 171 NRDFKKTKTREQVTEAFREFTKGNQN------ILIAYRDRLKAIRATLEISPFFKCHEVI 224

Query: 235 SSSLLFSYD-EHKAYVHMIDFAHVVPATD------------NNLDSNYLGGLNNIIKLFQ 281
            SSLLF +D + +A V MIDF    P  +             N +  YL GL+N+I +  
Sbjct: 225 GSSLLFIHDKKEQAKVWMIDFGKTTPLPEGQTLQHDVPWQEGNREDGYLSGLDNLIDILT 284

Query: 282 TIL 284
            + 
Sbjct: 285 EMS 287


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 39.1 bits (90), Expect = 0.001
 Identities = 38/287 (13%), Positives = 77/287 (26%), Gaps = 93/287 (32%)

Query: 51  DKDGHVLKYINKPILGERETKFYE-------------VLQSTEDPELLKLKKFVPQ---Y 94
           D +    +Y  K IL   E  F +             +L   E   ++  K  V      
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 95  FGTTTLKMSNQDVKFLILSNLIGDLHEPR---VMDIKIGYQTHEPGAPKEKVLAEESKYA 151
           F T   K      KF      + ++       +M   I  +  +P       + +  +  
Sbjct: 68  FWTLLSKQEEMVQKF------VEEVLRINYKFLMS-PIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 152 GTKKPWGFCIPGFQIYNKDTGKREKYGKEFGKHLKKD----------------SVL---- 191
                        Q++ K    R +   +  + L +                 + +    
Sbjct: 121 NDN----------QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 192 ------------NVFKMFVDQYSSPSVSIETVKSFLYSLKQIQSWFETQRIYHFYSSSLL 239
                        +F + +   +SP   +E ++  LY +        T R  H  SS++ 
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW----TSRSDH--SSNIK 224

Query: 240 FSYDEHKAYVHMIDFAHVVPATDNNLDSNYLGGLNNIIKLFQTILDD 286
                 +A +  +  +       N L                 +L +
Sbjct: 225 LRIHSIQAELRRLLKSKPYE---NCLL----------------VLLN 252



 Score = 37.5 bits (86), Expect = 0.005
 Identities = 49/360 (13%), Positives = 96/360 (26%), Gaps = 125/360 (34%)

Query: 35  GGHEFIAGKQTM--SMLKDKDGHVLKYINKPI----LGERETKFYEVLQSTEDPELLKLK 88
            G    +GK  +   +       V   ++  I    L    +    VL+  +        
Sbjct: 159 LG----SGKTWVALDVCLSYK--VQCKMDFKIFWLNLKNCNSP-ETVLEMLQKLLYQIDP 211

Query: 89  KFVPQYFGTTTLKMSNQDVK---------------FLILSNLIGDLHEPRVMDI--KI-- 129
            +  +   ++ +K+    ++                L+L N + +       ++  KI  
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNAFNLSCKILL 270

Query: 130 -------------GYQTHEPGAPKEKVLAEE------SKYAGTKK-----------PWGF 159
                           TH         L  +       KY   +            P   
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 160 CIPGFQIYNKDTGKREKYGKEFGKHLKKDSVLNVFKMFVDQ---------YSS-----PS 205
            I    I  +D          + KH+  D +  + +  ++          +       PS
Sbjct: 331 SIIAESI--RDGLATWDN---W-KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 206 VSI--------------ETVKSFL-----YSLKQIQSWFETQRIYHFYSS---------- 236
             I                V   +     YSL + Q    T  I   Y            
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 237 ---SLLFSYDEHKAYVHMIDFAHVVPATDNNLDSNYLG-GLNNI-----IKLFQTILDDL 287
              S++  Y+  K +    D   ++P   +    +++G  L NI     + LF+ +  D 
Sbjct: 445 LHRSIVDHYNIPKTF----DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 12/40 (30%)

Query: 175 EKYGKEFGKHLKK-DSVLNVFKMFVDQYSSPSVSIE-TVK 212
           EK      + LKK  + L   K++ D  S+P+++I+ T++
Sbjct: 18  EK------QALKKLQASL---KLYADD-SAPALAIKATME 47


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 44/289 (15%), Positives = 83/289 (28%), Gaps = 107/289 (37%)

Query: 7   TLWMAECVMEDGTRFA--IPQGTELLA---EQVGGHEFIAGKQTMSMLKDKDGHVLKYIN 61
             +     +++  +F   +P+ TE  A   E     E +                L Y++
Sbjct: 25  ASFFIASQLQE--QFNKILPEPTEGFAADDEPTTPAELVG-------------KFLGYVS 69

Query: 62  KPILGERETKFYEVLQSTEDPELLKLKKFVPQYFGTTTLKMSNQDVKFLILSNLIGDLHE 121
             +   +  +F +VL        L L +F   Y       +   D+  L    L+ +   
Sbjct: 70  SLVEPSKVGQFDQVLN-------LCLTEFENCY-------LEGNDIHALAAK-LLQE--- 111

Query: 122 PRVMDIKIGYQTHEPGAPKEKVLAEESKYAGTKKPWGFCIPGFQIYNKDTGKREKYGKEF 181
                       ++    K K L + +                         R    + F
Sbjct: 112 ------------NDTTLVKTKELIK-NYITA---------------------RIMAKRPF 137

Query: 182 GKHLKKDSVLNVFKMFVDQYSSPSVSIETVKSFLYSL--KQ--IQSWF-ETQRIYHFY-- 234
            K  K +S L  F+         +V     +  L ++   Q     +F E + +Y  Y  
Sbjct: 138 DK--KSNSAL--FR---------AVGEGNAQ--LVAIFGGQGNTDDYFEELRDLYQTYHV 182

Query: 235 --------SSSLLFSY-----DEHKAYVHMIDFAHVVPATDNNLDSNYL 270
                   S+  L        D  K +   ++    +    N  D +YL
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231



 Score = 28.9 bits (64), Expect = 2.5
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 34/107 (31%)

Query: 198 VDQYSS-PSV----SIETVKSFLYSLKQIQSWFETQRIYHFYSSSL------LFSYDEHK 246
           +D YS+ P      S+E     L       S+F   ++   ++  L        + DE  
Sbjct: 1   MDAYSTRPLTLSHGSLEH--VLLVP---TASFFIASQLQEQFNKILPEPTEGFAADDEPT 55

Query: 247 AYVHM----IDF-AHVVPATD------------NNLDSNYLGGLNNI 276
               +    + + + +V  +                ++ YL G N+I
Sbjct: 56  TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG-NDI 101


>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1,
           alternative splicing, phosphoprotein, protein binding;
           1.80A {Homo sapiens} PDB: 3frs_A
          Length = 191

 Score = 29.5 bits (66), Expect = 1.0
 Identities = 10/41 (24%), Positives = 19/41 (46%)

Query: 175 EKYGKEFGKHLKKDSVLNVFKMFVDQYSSPSVSIETVKSFL 215
            KY KE+GK  + + +  V    + + S  +     V+ +L
Sbjct: 128 AKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYL 168


>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
           base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
           5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
           d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
           2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
          Length = 421

 Score = 28.8 bits (64), Expect = 2.3
 Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 219 KQIQSWFETQR--IYHFYSSSLLFSYDEHKAYVHMIDFAHVVPATDNNLDSNYLGGL 273
           K+++ ++ T    + H   + ++ ++DE           H++P     LD + L   
Sbjct: 320 KELRDFYATPHLVVAHTKGTRVVAAWDERAYPWREE--FHLLPKEGVRLDPSSLVQW 374


>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe;
           acetyltransferase, bifunctional, drug design; HET: ACO
           UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4
           c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A*
           1g95_A*
          Length = 468

 Score = 27.8 bits (63), Expect = 4.0
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 13/51 (25%)

Query: 11  AECV---MEDGTRFAIPQGTELLAEQVG-GHEFIAGKQTMSMLKDKDGHVL 57
           AE V   +   T F   Q     +EQ+G GH   A   T  +L+   GH L
Sbjct: 65  AELVEEVLAGQTEFVT-Q-----SEQLGTGH---AVMMTEPILEGLSGHTL 106


>3mvu_A TENA family transcriptional regulator; TENA/THI-4/PQQC family,
           structural genomics, joint center FO structural
           genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
          Length = 226

 Score = 27.0 bits (59), Expect = 6.3
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 180 EFGKHLKKDSVLNVFKMFVDQYSSP 204
           E GK L  ++   ++  ++D Y   
Sbjct: 147 EIGKRLTAEATSTLYGDWIDTYGGD 171


>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase,
           ATP-binding, folate biosynthesis, ligase,
           multifunctional enzyme; HET: KCX PD8 ADP; 1.82A
           {Escherichia coli} PDB: 1w7k_A*
          Length = 422

 Score = 27.5 bits (62), Expect = 6.3
 Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 3/32 (9%)

Query: 24  PQGTELLAEQVGGHEFIAGKQT--MSMLKDKD 53
           P   E L  ++       G+    + ML DKD
Sbjct: 307 PHAAEYLTGRMK-ALPKNGRVLAVIGMLHDKD 337


>2pzz_A UPF0201 protein MJ1564; methanococcus jannaschii, PSI2, NYSGXRC,
           structural genomics, protein structure initiative; 2.20A
           {Methanocaldococcus jannaschii DSM2661} SCOP: d.77.1.2
          Length = 147

 Score = 26.5 bits (58), Expect = 7.1
 Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 187 KDSVLNVFKMFVDQYSSPSVSIETVKSFLYSLKQIQSWFETQRI---------YHFYSSS 237
           K ++LN+F      +          +    S+++++    +Q I              ++
Sbjct: 20  KKAILNIFPKAKLTFIEKDNEFGEWEGKTKSVEKLKELLRSQSILDAARMVLEKGMTENA 79

Query: 238 LLFSYDEHKAYVHMIDF 254
             F  ++  AYV  ++F
Sbjct: 80  TKFYLNKQAAYVGAVNF 96


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0505    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,377,607
Number of extensions: 254295
Number of successful extensions: 467
Number of sequences better than 10.0: 1
Number of HSP's gapped: 436
Number of HSP's successfully gapped: 22
Length of query: 293
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 200
Effective length of database: 4,105,140
Effective search space: 821028000
Effective search space used: 821028000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.3 bits)