RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1900
         (293 letters)



>d1w2fa_ d.143.1.3 (A:) Inositol 1,4,5-trisphosphate 3-kinase A,
           IP3K A {Human (Homo sapiens) [TaxId: 9606]}
          Length = 276

 Score =  148 bits (375), Expect = 8e-44
 Identities = 56/295 (18%), Positives = 96/295 (32%), Gaps = 66/295 (22%)

Query: 33  QVGGHEFIAGKQTMSMLKDKDGHVLKYINKPILGERETKFYEVLQSTEDPELLKLKKFVP 92
           Q+ GH                G +LK        E E      L +        L+  VP
Sbjct: 5   QLAGHTGSF------KAAGTSGLILK-----RCSEPERYCLARLMADA------LRGCVP 47

Query: 93  QYFGTTTLKMSNQDVKFLILSNLIGDLHEPRVMDIKIGYQTHEPGAPKEKVLAEESKYAG 152
            + G            +L L +L+     P V+D K+G +T+      +     + +   
Sbjct: 48  AFHGVVERDGE----SYLQLQDLLDGFDGPCVLDCKMGVRTYLEEELTKARERPKLRKDM 103

Query: 153 TKKPWGFC--IPGFQIYNKDTGKREKY---------------------------GKEFGK 183
            KK        P  + + +    + +Y                             +F  
Sbjct: 104 YKKMLAVDPEAPTEEEHAQRAVTKPRYMQWREGISSSTTLGFRIEGIKKADGSCSTDFKT 163

Query: 184 HLKKDSVLNVFKMFVDQYSSPSVSIETVKSFLYSLKQIQSWFETQRIYHFYSSSLLFSYD 243
              ++ VL VF+ FV         +    + L  ++      E  R +    SSLLF +D
Sbjct: 164 TRSREQVLRVFEEFVQGDEEV---LRRYLNRLQQIRDTLEVSEFFRRHEVIGSSLLFVHD 220

Query: 244 -EHKAYVHMIDFAHVV------------PATDNNLDSNYLGGLNNIIKLFQTILD 285
             H+A V +IDF                P  + N +  YL GL+N+I +  ++ +
Sbjct: 221 HCHRAGVWLIDFGKTTPLPDGQILDHRRPWEEGNREDGYLLGLDNLIGILASLAE 275


>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 53

 Score = 26.0 bits (57), Expect = 1.1
 Identities = 7/31 (22%), Positives = 12/31 (38%)

Query: 199 DQYSSPSVSIETVKSFLYSLKQIQSWFETQR 229
            Q  +     E  K    +  Q++ WF  +R
Sbjct: 19  KQSLNSKEKEEVAKKCGITPLQVRVWFINKR 49


>d1lxja_ d.58.48.1 (A:) Hypothetical protein YB1001C {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 104

 Score = 26.6 bits (59), Expect = 1.7
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 8/43 (18%)

Query: 115 LIGDLHE-------PRVM-DIKIGYQTHEPGAPKEKVLAEESK 149
           LIG++HE        RV  DI++G +T +    ++K+     K
Sbjct: 59  LIGEIHEYGHEKGYVRVHTDIRVGTRTDKHQTAQDKIDVVLKK 101


>d1yqha1 d.58.48.1 (A:1-101) Hypothetical protein BC0424 {Bacillus
           cereus [TaxId: 1396]}
          Length = 101

 Score = 25.0 bits (55), Expect = 4.5
 Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 8/45 (17%)

Query: 115 LIGDLHE-------PRVM-DIKIGYQTHEPGAPKEKVLAEESKYA 151
           ++    +         V+  IKI Y+        EKV     +YA
Sbjct: 57  VVKRAQQACVDAGAEEVITSIKIHYRPSTGVTIDEKVWKYRDEYA 101


>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 65

 Score = 24.5 bits (53), Expect = 4.7
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 199 DQYSSPSVSIETVKSFLYSLKQIQSWFETQRI 230
            QY       E  +    +  +IQ WF+ +R 
Sbjct: 24  TQYPDIYTREELAQRTNLTEARIQVWFQNRRA 55


>d1lxna_ d.58.48.1 (A:) Hypothetical protein MTH1187 {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 99

 Score = 24.6 bits (54), Expect = 7.0
 Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 8/46 (17%)

Query: 112 LSNLIGDLHE-------PRVM-DIKIGYQTHEPGAPKEKVLAEESK 149
           L   +   HE        RV   +KI  +       ++KV + + K
Sbjct: 53  LMEAVKAAHEAVLQAGSDRVYTTLKIDDRRDADRGLRDKVESVKEK 98


>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
           acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 317

 Score = 25.9 bits (55), Expect = 7.3
 Identities = 8/55 (14%), Positives = 26/55 (47%), Gaps = 11/55 (20%)

Query: 229 RIYHFYSSSLLFSYDEHKAYVHMIDFAHVVPATDNNLDSNYL--GGLNNIIKLFQ 281
           R++ + +   + + + H+ +V  +DF            + Y+  G ++  +K+++
Sbjct: 272 RVWDYKNKRCMKTLNAHEHFVTSLDFHK---------TAPYVVTGSVDQTVKVWE 317


>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase
           {Escherichia coli [TaxId: 562]}
          Length = 304

 Score = 25.7 bits (55), Expect = 8.3
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 5/45 (11%)

Query: 201 YSSPSVSIETVKSFLYSLKQIQSWFETQRIYHFYSSSLLFSYDEH 245
           +    V + +  +  Y      S FE  R Y  +   ++F + EH
Sbjct: 14  WEDAKVHVMS-HALHYG----TSVFEGIRCYDSHKGPVVFRHREH 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,079,645
Number of extensions: 49665
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 14
Length of query: 293
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 208
Effective length of database: 1,240,546
Effective search space: 258033568
Effective search space used: 258033568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.4 bits)