BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1901
(205 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28DP6|PAX3_XENTR Paired box protein Pax-3 OS=Xenopus tropicalis GN=pax3 PE=2 SV=2
Length = 461
Score = 144 bits (362), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 68/91 (74%), Positives = 77/91 (84%)
Query: 15 PSSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKL 74
P S + SD +SEP +PLKRKQRRSRTTFT +QLEELERAF+RT YPD+YTREELAQ+ KL
Sbjct: 176 PESEEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKL 235
Query: 75 TEARVQVWFSNRRARLRKQLNSQQLNAFNSM 105
TEARVQVWFSNRRAR RKQ + QL AFN +
Sbjct: 236 TEARVQVWFSNRRARWRKQAGANQLMAFNHL 266
>sp|P23759|PAX7_HUMAN Paired box protein Pax-7 OS=Homo sapiens GN=PAX7 PE=2 SV=3
Length = 520
Score = 144 bits (362), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 76/87 (87%)
Query: 19 DESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEAR 78
+ SD ESEP +PLKRKQRRSRTTFT +QLEELE+AF+RT YPD+YTREELAQ+TKLTEAR
Sbjct: 201 EGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEAR 260
Query: 79 VQVWFSNRRARLRKQLNSQQLNAFNSM 105
VQVWFSNRRAR RKQ + QL AFN +
Sbjct: 261 VQVWFSNRRARWRKQAGANQLAAFNHL 287
>sp|Q645N4|PAX3A_XENLA Paired box protein Pax-3-A OS=Xenopus laevis GN=pax3-a PE=2 SV=1
Length = 484
Score = 144 bits (362), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 68/91 (74%), Positives = 77/91 (84%)
Query: 15 PSSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKL 74
P S + SD +SEP +PLKRKQRRSRTTFT +QLEELERAF+RT YPD+YTREELAQ+ KL
Sbjct: 200 PESEEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKL 259
Query: 75 TEARVQVWFSNRRARLRKQLNSQQLNAFNSM 105
TEARVQVWFSNRRAR RKQ + QL AFN +
Sbjct: 260 TEARVQVWFSNRRARWRKQAGANQLMAFNHL 290
>sp|Q0IH87|PAX3B_XENLA Paired box protein Pax-3-B OS=Xenopus laevis GN=pax3-b PE=2 SV=2
Length = 483
Score = 144 bits (362), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/91 (74%), Positives = 77/91 (84%)
Query: 15 PSSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKL 74
P S + SD +SEP +PLKRKQRRSRTTFT +QLEELERAF+RT YPD+YTREELAQ+ KL
Sbjct: 199 PESEEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKL 258
Query: 75 TEARVQVWFSNRRARLRKQLNSQQLNAFNSM 105
TEARVQVWFSNRRAR RKQ + QL AFN +
Sbjct: 259 TEARVQVWFSNRRARWRKQAGANQLMAFNHL 289
>sp|P24610|PAX3_MOUSE Paired box protein Pax-3 OS=Mus musculus GN=Pax3 PE=1 SV=2
Length = 479
Score = 144 bits (362), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/91 (74%), Positives = 77/91 (84%)
Query: 15 PSSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKL 74
P S + SD +SEP +PLKRKQRRSRTTFT +QLEELERAF+RT YPD+YTREELAQ+ KL
Sbjct: 199 PQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKL 258
Query: 75 TEARVQVWFSNRRARLRKQLNSQQLNAFNSM 105
TEARVQVWFSNRRAR RKQ + QL AFN +
Sbjct: 259 TEARVQVWFSNRRARWRKQAGANQLMAFNHL 289
>sp|P23760|PAX3_HUMAN Paired box protein Pax-3 OS=Homo sapiens GN=PAX3 PE=1 SV=2
Length = 479
Score = 143 bits (361), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 68/91 (74%), Positives = 77/91 (84%)
Query: 15 PSSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKL 74
P S + SD +SEP +PLKRKQRRSRTTFT +QLEELERAF+RT YPD+YTREELAQ+ KL
Sbjct: 199 PQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKL 258
Query: 75 TEARVQVWFSNRRARLRKQLNSQQLNAFNSM 105
TEARVQVWFSNRRAR RKQ + QL AFN +
Sbjct: 259 TEARVQVWFSNRRARWRKQAGANQLMAFNHL 289
>sp|P09083|GSBN_DROME Protein gooseberry-neuro OS=Drosophila melanogaster GN=gsb-n PE=1
SV=2
Length = 449
Score = 143 bits (361), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 85/170 (50%), Positives = 96/170 (56%), Gaps = 16/170 (9%)
Query: 3 QDYQDDLWVVGRPSSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDV 62
+DY + + GR S D SDTESEPGIPLKRKQRRSRTTFT +QLE LERAF RTQYPDV
Sbjct: 152 KDYTINGILGGRDS--DISDTESEPGIPLKRKQRRSRTTFTAEQLEALERAFSRTQYPDV 209
Query: 63 YTREELAQKTKLTEARVQVWFSNRRARLRKQLNSQQLNAFNSMSLHHQYADSAANFSHQS 122
YTREELAQ T LTEAR+QVWFSNRRARLRK + + M+ S +
Sbjct: 210 YTREELAQTTALTEARIQVWFSNRRARLRKHSGGSN-SGLSPMNSGSSNVGVGVGLSGAT 268
Query: 123 HPTSWAQQAASYATAGAALTAGYNSHAYSSATPEFPVSGPGYHQTNQHCA 172
P Y G AGY S P +G G + H A
Sbjct: 269 APL-------GYGPLGVGSMAGY------SPAPGTTATGAGMNDGVHHAA 305
>sp|P06601|PRD_DROME Segmentation protein paired OS=Drosophila melanogaster GN=prd PE=1
SV=1
Length = 613
Score = 143 bits (361), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 65/81 (80%), Positives = 72/81 (88%)
Query: 13 GRPSSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKT 72
G+PS D SD ESEPGI LKRKQRR RTTF+ QL+ELERAF+RTQYPD+YTREELAQ+T
Sbjct: 191 GKPSDEDISDCESEPGIALKRKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRT 250
Query: 73 KLTEARVQVWFSNRRARLRKQ 93
LTEAR+QVWFSNRRARLRKQ
Sbjct: 251 NLTEARIQVWFSNRRARLRKQ 271
>sp|P47239|PAX7_MOUSE Paired box protein Pax-7 OS=Mus musculus GN=Pax7 PE=2 SV=2
Length = 503
Score = 143 bits (360), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 67/85 (78%), Positives = 75/85 (88%)
Query: 21 SDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQ 80
SD ESEP +PLKRKQRRSRTTFT +QLEELE+AF+RT YPD+YTREELAQ+TKLTEARVQ
Sbjct: 201 SDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQ 260
Query: 81 VWFSNRRARLRKQLNSQQLNAFNSM 105
VWFSNRRAR RKQ + QL AFN +
Sbjct: 261 VWFSNRRARWRKQAGANQLAAFNHL 285
>sp|P09082|GSB_DROME Protein gooseberry OS=Drosophila melanogaster GN=gsb PE=2 SV=1
Length = 427
Score = 140 bits (352), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 76/90 (84%)
Query: 13 GRPSSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKT 72
G S DES+ ++EP + LKRKQRRSRTTF+ DQ++ LER F RTQYPDVYTREELAQ T
Sbjct: 163 GSVGSEDESEDDAEPSVQLKRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQST 222
Query: 73 KLTEARVQVWFSNRRARLRKQLNSQQLNAF 102
LTEARVQVWFSNRRARLRKQLN+QQ+ +F
Sbjct: 223 GLTEARVQVWFSNRRARLRKQLNTQQVPSF 252
>sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1
SV=2
Length = 408
Score = 107 bits (267), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 15 PSSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKL 74
P S SD E++ P KRKQRR RTTFT QLEELE+AF RT YPDV+TREELA K L
Sbjct: 66 PVSDGNSDCEADEYAP-KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGL 124
Query: 75 TEARVQVWFSNRRARLRKQ 93
TEAR+QVWF NRRA+ RKQ
Sbjct: 125 TEARIQVWFQNRRAKWRKQ 143
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1
Length = 566
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 61/73 (83%), Gaps = 1/73 (1%)
Query: 21 SDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQ 80
+ ++SE G+ LKRKQRR RTTFT QLEELERAFQ+T YPDV+TREELA + LTEARVQ
Sbjct: 319 AGSDSEEGL-LKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 377
Query: 81 VWFSNRRARLRKQ 93
VWF NRRA+ RK+
Sbjct: 378 VWFQNRRAKWRKR 390
>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1
Length = 562
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 61/73 (83%), Gaps = 1/73 (1%)
Query: 21 SDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQ 80
+ ++SE G+ LKRKQRR RTTFT QLEELERAFQ+T YPDV+TREELA + LTEARVQ
Sbjct: 315 AGSDSEEGL-LKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 373
Query: 81 VWFSNRRARLRKQ 93
VWF NRRA+ RK+
Sbjct: 374 VWFQNRRAKWRKR 386
>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1
Length = 453
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 67/92 (72%), Gaps = 6/92 (6%)
Query: 2 DQDYQDDLWVVGRPSSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPD 61
D D +D G S + ++SE G+ LKRKQRR RTTFT QLEELERAFQ+T YPD
Sbjct: 188 DGDVKD-----GEDSVCLSAGSDSEEGM-LKRKQRRYRTTFTSYQLEELERAFQKTHYPD 241
Query: 62 VYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93
V+TREELA + LTEARVQVWF NRRA+ RK+
Sbjct: 242 VFTREELAMRLDLTEARVQVWFQNRRAKWRKR 273
>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3
Length = 564
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 61/73 (83%), Gaps = 1/73 (1%)
Query: 21 SDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQ 80
+ ++SE G+ LKRKQRR RTTFT QLEELERAFQ+T YPDV+TREELA + LTEARVQ
Sbjct: 317 AGSDSEEGL-LKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 375
Query: 81 VWFSNRRARLRKQ 93
VWF NRRA+ RK+
Sbjct: 376 VWFQNRRAKWRKR 388
>sp|O35690|PHX2B_MOUSE Paired mesoderm homeobox protein 2B OS=Mus musculus GN=Phox2b PE=1
SV=1
Length = 314
Score = 103 bits (257), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 52/66 (78%)
Query: 28 GIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRR 87
G+ KRKQRR RTTFT QL+ELER F T YPD+YTREELA K LTEARVQVWF NRR
Sbjct: 91 GLNEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRR 150
Query: 88 ARLRKQ 93
A+ RKQ
Sbjct: 151 AKFRKQ 156
>sp|Q99453|PHX2B_HUMAN Paired mesoderm homeobox protein 2B OS=Homo sapiens GN=PHOX2B PE=1
SV=2
Length = 314
Score = 103 bits (257), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 52/66 (78%)
Query: 28 GIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRR 87
G+ KRKQRR RTTFT QL+ELER F T YPD+YTREELA K LTEARVQVWF NRR
Sbjct: 91 GLNEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRR 150
Query: 88 ARLRKQ 93
A+ RKQ
Sbjct: 151 AKFRKQ 156
>sp|Q62066|PHX2A_MOUSE Paired mesoderm homeobox protein 2A OS=Mus musculus GN=Phox2a PE=2
SV=1
Length = 280
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 52/66 (78%)
Query: 28 GIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRR 87
G+ KRKQRR RTTFT QL+ELER F T YPD+YTREELA K LTEARVQVWF NRR
Sbjct: 83 GLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRR 142
Query: 88 ARLRKQ 93
A+ RKQ
Sbjct: 143 AKFRKQ 148
>sp|Q62782|PHX2A_RAT Paired mesoderm homeobox protein 2A OS=Rattus norvegicus GN=Phox2a
PE=2 SV=1
Length = 281
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 52/66 (78%)
Query: 28 GIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRR 87
G+ KRKQRR RTTFT QL+ELER F T YPD+YTREELA K LTEARVQVWF NRR
Sbjct: 83 GLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRR 142
Query: 88 ARLRKQ 93
A+ RKQ
Sbjct: 143 AKFRKQ 148
>sp|O14813|PHX2A_HUMAN Paired mesoderm homeobox protein 2A OS=Homo sapiens GN=PHOX2A PE=1
SV=2
Length = 284
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 52/66 (78%)
Query: 28 GIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRR 87
G+ KRKQRR RTTFT QL+ELER F T YPD+YTREELA K LTEARVQVWF NRR
Sbjct: 83 GLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRR 142
Query: 88 ARLRKQ 93
A+ RKQ
Sbjct: 143 AKFRKQ 148
>sp|Q9H161|ALX4_HUMAN Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1
SV=2
Length = 411
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 92/171 (53%), Gaps = 21/171 (12%)
Query: 15 PSSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKL 74
PS +++D+ES G K+RR+RTTFT QLEELE+ FQ+T YPDVY RE+LA +T L
Sbjct: 199 PSPLEKADSESNKG-----KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDL 253
Query: 75 TEARVQVWFSNRRARLRKQ---LNSQQLNAFNSMSLHHQYADSAANFSHQSHPTSWAQQA 131
TEARVQVWF NRRA+ RK+ QQ+ S + A N++ +P SW
Sbjct: 254 TEARVQVWFQNRRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNP-SWLGNN 312
Query: 132 ASYATAGAALT------AGYNSHAY------SSATPEFPVSGPGYHQTNQH 170
+ + A + A + HA+ SS T VSG G H H
Sbjct: 313 GAASPVPACVVPCDPVPACMSPHAHPPGSGASSVTDFLSVSGAGSHVGQTH 363
>sp|O42357|RX2_DANRE Retinal homeobox protein Rx2 OS=Danio rerio GN=rx2 PE=2 SV=1
Length = 327
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 90/175 (51%), Gaps = 22/175 (12%)
Query: 12 VGRPSSGDESDTESEPGIP----LKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREE 67
+G P S ESD+ S P IP K+K RR+RTTFT QL ELERAF+++ YPDVY+REE
Sbjct: 109 LGDPRSNVESDSRS-PDIPDEDQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREE 167
Query: 68 LAQKTKLTEARVQVWFSNRRARLRKQ---------LNSQQLNAFNSMSLHHQYADSAANF 118
LA K L E RVQVWF NRRA+ R+Q L+ + +FN + A +
Sbjct: 168 LAMKVNLPEVRVQVWFQNRRAKWRRQEKMDTGTMKLHDSPIRSFNRPPM----APNVGPM 223
Query: 119 SHQSHPTSWAQQAASYATAGAALTA----GYNSHAYSSATPEFPVSGPGYHQTNQ 169
S+ W S AT ++ G + +A P F + PG Q Q
Sbjct: 224 SNSLPLDPWLSSPLSSATPMHSIPGFMGPGQSLQPTYTAHPGFLNTSPGMMQNIQ 278
>sp|Q26602|SMOX3_SCHMA Homeobox protein SMOX-3 (Fragment) OS=Schistosoma mansoni
GN=SMOX-3 PE=2 SV=1
Length = 288
Score = 100 bits (250), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 51/61 (83%)
Query: 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91
KRKQRR RTTFT QL+ELERAFQ T YPD+YTRE+LA + LTEARVQVWF NRRA+ R
Sbjct: 1 KRKQRRIRTTFTSLQLKELERAFQETHYPDIYTREDLALRIDLTEARVQVWFQNRRAKFR 60
Query: 92 K 92
K
Sbjct: 61 K 61
>sp|Q4LAL6|ALX4_BOVIN Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1
Length = 397
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 91/171 (53%), Gaps = 21/171 (12%)
Query: 15 PSSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKL 74
PS +++D+ES G K+RR+RTTFT QLEELE+ FQ+T YPDVY RE+LA +T L
Sbjct: 185 PSPMEKADSESNKG-----KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDL 239
Query: 75 TEARVQVWFSNRRARLRKQ---LNSQQLNAFNSMSLHHQYADSAANFSHQSHPTSWAQQA 131
TEARVQVWF NRRA+ RK+ QQ+ S + A N++ +P SW
Sbjct: 240 TEARVQVWFQNRRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNP-SWIGNN 298
Query: 132 ASYATAGAALT------AGYNSHAY------SSATPEFPVSGPGYHQTNQH 170
+ + A + A + HA+ S T VSG G H H
Sbjct: 299 GAASPVPACVVPCDPVPACMSPHAHPPGSGASGVTDFLSVSGAGSHVGQTH 349
>sp|O35137|ALX4_MOUSE Homeobox protein aristaless-like 4 OS=Mus musculus GN=Alx4 PE=1
SV=1
Length = 399
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 63/85 (74%), Gaps = 5/85 (5%)
Query: 15 PSSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKL 74
PS +++D+ES G K+RR+RTTFT QLEELE+ FQ+T YPDVY RE+LA +T L
Sbjct: 187 PSPLEKTDSESNKG-----KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDL 241
Query: 75 TEARVQVWFSNRRARLRKQLNSQQL 99
TEARVQVWF NRRA+ RK+ Q+
Sbjct: 242 TEARVQVWFQNRRAKWRKRERFGQM 266
>sp|Q26657|ALX_STRPU Aristaless homeobox protein (Fragment) OS=Strongylocentrotus
purpuratus GN=ALX PE=2 SV=2
Length = 327
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/64 (75%), Positives = 53/64 (82%)
Query: 30 PLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRAR 89
P KRKQRR RTTFT QLEELERAF +T YPDV+TREELA + LTEARVQVWF NRRA+
Sbjct: 207 PTKRKQRRYRTTFTSYQLEELERAFCKTHYPDVFTREELAMRVDLTEARVQVWFQNRRAK 266
Query: 90 LRKQ 93
RK+
Sbjct: 267 WRKR 270
>sp|P55864|PAX6_XENLA Paired box protein Pax-6 OS=Xenopus laevis GN=pax6 PE=2 SV=1
Length = 422
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 90/145 (62%), Gaps = 4/145 (2%)
Query: 16 SSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLT 75
S+G++SD E++ + LKRK +R+RT+FT +Q+E LE+ F+RT YPDV+ RE LA K L
Sbjct: 192 SNGEDSD-EAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLP 250
Query: 76 EARVQVWFSNRRARLRKQ--LNSQQLNAFNSMS-LHHQYADSAANFSHQSHPTSWAQQAA 132
EAR+QVWFSNRRA+ R++ L +Q+ A N+ S + + SA+ + PT+
Sbjct: 251 EARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSASVYQPIPQPTTPVSSFT 310
Query: 133 SYATAGAALTAGYNSHAYSSATPEF 157
S + G TA NS++ P F
Sbjct: 311 SGSMLGRTDTALTNSYSALPPMPSF 335
>sp|O35602|RX_MOUSE Retinal homeobox protein Rx OS=Mus musculus GN=Rax PE=2 SV=2
Length = 342
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 59/79 (74%), Gaps = 3/79 (3%)
Query: 15 PSSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKL 74
P++GD +E EP K+K RR+RTTFT QL ELERAF+++ YPDVY+REELA K L
Sbjct: 119 PAAGDSKLSEEEPP---KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNL 175
Query: 75 TEARVQVWFSNRRARLRKQ 93
E RVQVWF NRRA+ R+Q
Sbjct: 176 PEVRVQVWFQNRRAKWRRQ 194
>sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx OS=Drosophila melanogaster GN=Rx PE=2
SV=2
Length = 873
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 57/79 (72%)
Query: 21 SDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQ 80
SD E + K+K RR+RTTFT QL ELERAF+++ YPDVY+REELA K L E RVQ
Sbjct: 514 SDDEGQDDNCAKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 573
Query: 81 VWFSNRRARLRKQLNSQQL 99
VWF NRRA+ R+Q S+ L
Sbjct: 574 VWFQNRRAKWRRQEKSESL 592
>sp|Q9JLT7|RX_RAT Retinal homeobox protein Rx OS=Rattus norvegicus GN=Rax PE=2 SV=1
Length = 342
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 59/79 (74%), Gaps = 2/79 (2%)
Query: 15 PSSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKL 74
P++GD +E E P K+K RR+RTTFT QL ELERAF+++ YPDVY+REELA K L
Sbjct: 119 PAAGDSKLSEEE--EPPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNL 176
Query: 75 TEARVQVWFSNRRARLRKQ 93
E RVQVWF NRRA+ R+Q
Sbjct: 177 PEVRVQVWFQNRRAKWRRQ 195
>sp|Q1LZF1|PAX6_BOVIN Paired box protein Pax-6 OS=Bos taurus GN=PAX6 PE=2 SV=1
Length = 422
Score = 97.4 bits (241), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 90/146 (61%), Gaps = 6/146 (4%)
Query: 16 SSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLT 75
S+G++SD E++ + LKRK +R+RT+FT +Q+E LE+ F+RT YPDV+ RE LA K L
Sbjct: 192 SNGEDSD-EAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLP 250
Query: 76 EARVQVWFSNRRARLRKQ--LNSQQLNAFNSMSLHHQYADSAANFSHQ--SHPTSWAQQA 131
EAR+QVWFSNRRA+ R++ L +Q+ A N+ S H + S + +Q PT+
Sbjct: 251 EARIQVWFSNRRAKWRREEKLRNQRRQASNTPS-HIPISSSFSTSVYQPIPQPTTPVSSF 309
Query: 132 ASYATAGAALTAGYNSHAYSSATPEF 157
S + G TA N+++ P F
Sbjct: 310 TSGSMLGRTDTALTNTYSALPPMPSF 335
>sp|P63016|PAX6_RAT Paired box protein Pax-6 OS=Rattus norvegicus GN=Pax6 PE=2 SV=1
Length = 422
Score = 97.4 bits (241), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 90/146 (61%), Gaps = 6/146 (4%)
Query: 16 SSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLT 75
S+G++SD E++ + LKRK +R+RT+FT +Q+E LE+ F+RT YPDV+ RE LA K L
Sbjct: 192 SNGEDSD-EAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLP 250
Query: 76 EARVQVWFSNRRARLRKQ--LNSQQLNAFNSMSLHHQYADSAANFSHQ--SHPTSWAQQA 131
EAR+QVWFSNRRA+ R++ L +Q+ A N+ S H + S + +Q PT+
Sbjct: 251 EARIQVWFSNRRAKWRREEKLRNQRRQASNTPS-HIPISSSFSTSVYQPIPQPTTPVSSF 309
Query: 132 ASYATAGAALTAGYNSHAYSSATPEF 157
S + G TA N+++ P F
Sbjct: 310 TSGSMLGRTDTALTNTYSALPPMPSF 335
>sp|P63015|PAX6_MOUSE Paired box protein Pax-6 OS=Mus musculus GN=Pax6 PE=1 SV=1
Length = 422
Score = 97.1 bits (240), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 90/146 (61%), Gaps = 6/146 (4%)
Query: 16 SSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLT 75
S+G++SD E++ + LKRK +R+RT+FT +Q+E LE+ F+RT YPDV+ RE LA K L
Sbjct: 192 SNGEDSD-EAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLP 250
Query: 76 EARVQVWFSNRRARLRKQ--LNSQQLNAFNSMSLHHQYADSAANFSHQ--SHPTSWAQQA 131
EAR+QVWFSNRRA+ R++ L +Q+ A N+ S H + S + +Q PT+
Sbjct: 251 EARIQVWFSNRRAKWRREEKLRNQRRQASNTPS-HIPISSSFSTSVYQPIPQPTTPVSSF 309
Query: 132 ASYATAGAALTAGYNSHAYSSATPEF 157
S + G TA N+++ P F
Sbjct: 310 TSGSMLGRTDTALTNTYSALPPMPSF 335
>sp|P26367|PAX6_HUMAN Paired box protein Pax-6 OS=Homo sapiens GN=PAX6 PE=1 SV=2
Length = 422
Score = 97.1 bits (240), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 90/146 (61%), Gaps = 6/146 (4%)
Query: 16 SSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLT 75
S+G++SD E++ + LKRK +R+RT+FT +Q+E LE+ F+RT YPDV+ RE LA K L
Sbjct: 192 SNGEDSD-EAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLP 250
Query: 76 EARVQVWFSNRRARLRKQ--LNSQQLNAFNSMSLHHQYADSAANFSHQ--SHPTSWAQQA 131
EAR+QVWFSNRRA+ R++ L +Q+ A N+ S H + S + +Q PT+
Sbjct: 251 EARIQVWFSNRRAKWRREEKLRNQRRQASNTPS-HIPISSSFSTSVYQPIPQPTTPVSSF 309
Query: 132 ASYATAGAALTAGYNSHAYSSATPEF 157
S + G TA N+++ P F
Sbjct: 310 TSGSMLGRTDTALTNTYSALPPMPSF 335
>sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Homo sapiens GN=DRGX PE=2
SV=1
Length = 263
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 57/80 (71%), Gaps = 6/80 (7%)
Query: 13 GRPSSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKT 72
G SSGD D G L+RKQRR+RTTFT QLE LE F +T YPDV+TREELA K
Sbjct: 17 GNHSSGDFDD-----GF-LRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKI 70
Query: 73 KLTEARVQVWFSNRRARLRK 92
LTEARVQVWF NRRA+ RK
Sbjct: 71 NLTEARVQVWFQNRRAKWRK 90
>sp|Q9I8K3|PITX3_XENLA Pituitary homeobox 3 OS=Xenopus laevis GN=pitx3 PE=2 SV=1
Length = 292
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 84/144 (58%), Gaps = 13/144 (9%)
Query: 22 DTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQV 81
D+ E GI LK+KQRR RT FT QL+ELE FQR +YPD+ TREE+A T LTEARV+V
Sbjct: 48 DSNPEDGI-LKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRV 106
Query: 82 WFSNRRARLRKQLNSQQL----NAFNSM--SLHHQYADSAANFSHQSHPTSWAQQAASYA 135
WF NRRA+ RK+ +QQ N+F + L Y D + +S+ +WA + + +
Sbjct: 107 WFKNRRAKWRKRERNQQAELCKNSFGAQFNGLMQPYDDMYSGYSY----NNWATKGLATS 162
Query: 136 TAGAALTAGYNSHAYS--SATPEF 157
A +NS S S+ P F
Sbjct: 163 PLSAKSFQFFNSMNVSPLSSQPMF 186
>sp|Q8BYH0|DRGX_MOUSE Dorsal root ganglia homeobox protein OS=Mus musculus GN=Drgx PE=1
SV=2
Length = 263
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 50/62 (80%)
Query: 31 LKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90
L+RKQRR+RTTFT QLE LE F +T YPDV+TREELA K LTEARVQVWF NRRA+
Sbjct: 29 LRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKW 88
Query: 91 RK 92
RK
Sbjct: 89 RK 90
>sp|O42356|RX1_DANRE Retinal homeobox protein Rx1 OS=Danio rerio GN=rx1 PE=2 SV=2
Length = 330
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91
K+K RR+RTTFT QL ELERAF+++ YPDVY+REELA K L E RVQVWF NRRA+ R
Sbjct: 134 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWR 193
Query: 92 KQ---------LNSQQLNAFNSMSLH 108
+Q L+ + +FN S+H
Sbjct: 194 RQEKIDASTMKLHDSPMLSFNRPSMH 219
>sp|P47238|PAX6_COTJA Paired box protein Pax-6 OS=Coturnix coturnix japonica GN=PAX6 PE=2
SV=1
Length = 416
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 88/144 (61%), Gaps = 8/144 (5%)
Query: 16 SSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLT 75
S+G++SD E++ + LKRK +R+RT+FT +Q+E LE+ F+RT YPDV+ RE LA K L
Sbjct: 192 SNGEDSD-EAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLP 250
Query: 76 EARVQVWFSNRRARLRKQ--LNSQQLNAFNSMSLHHQYADSAANFSHQSHPTSWAQQAAS 133
EAR+QVWFSNRRA+ R++ L +Q+ A N+ S H + S + +Q P Q
Sbjct: 251 EARIQVWFSNRRAKWRREEKLRNQRRQASNTPS-HIPISSSFSTSVYQPIP----QPTTP 305
Query: 134 YATAGAALTAGYNSHAYSSATPEF 157
+ G TA N+++ P F
Sbjct: 306 GSMLGRTDTALTNTYSALPPMPSF 329
>sp|Q9I9D5|RX1_ASTFA Retinal homeobox protein Rx1 OS=Astyanax fasciatus GN=rx1 PE=2 SV=1
Length = 334
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 75/151 (49%), Gaps = 23/151 (15%)
Query: 15 PSSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKL 74
P GDE K+K RR+RTTFT QL ELERAF+++ YPDVY+REELA K L
Sbjct: 130 PEQGDEEQP--------KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNL 181
Query: 75 TEARVQVWFSNRRARLRKQ---------LNSQQLNAFNSMSLHHQYADSAANFSHQ---S 122
E RVQVWF NRRA+ R+Q L+ + +FN +H + + +
Sbjct: 182 PEVRVQVWFQNRRAKWRRQEKMDASAVKLHDSPMLSFNRPPMHTNVGPMSNSLPLDPWLT 241
Query: 123 HP---TSWAQQAASYATAGAALTAGYNSHAY 150
P T+ + L AGY H +
Sbjct: 242 SPLTSTTPVHSIPGFMGPSQGLQAGYPGHGF 272
>sp|O42567|RXB_XENLA Retinal homeobox protein Rx-B OS=Xenopus laevis GN=rax-b PE=2 SV=2
Length = 325
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 55/73 (75%), Gaps = 4/73 (5%)
Query: 21 SDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQ 80
SD E +P K+K RR+RTTFT QL ELERAF+++ YPDVY+REELA K L E RVQ
Sbjct: 120 SDDEQQP----KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 175
Query: 81 VWFSNRRARLRKQ 93
VWF NRRA+ R+Q
Sbjct: 176 VWFQNRRAKWRRQ 188
>sp|O95076|ALX3_HUMAN Homeobox protein aristaless-like 3 OS=Homo sapiens GN=ALX3 PE=1
SV=2
Length = 343
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 52/62 (83%)
Query: 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91
K K+RR+RTTF+ QLEELE+ FQ+T YPDVY RE+LA +T LTEARVQVWF NRRA+ R
Sbjct: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209
Query: 92 KQ 93
K+
Sbjct: 210 KR 211
>sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus laevis GN=rax-a PE=2 SV=2
Length = 322
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 55/73 (75%), Gaps = 4/73 (5%)
Query: 21 SDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQ 80
SD E +P K+K RR+RTTFT QL ELERAF+++ YPDVY+REELA K L E RVQ
Sbjct: 120 SDDEQQP----KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 175
Query: 81 VWFSNRRARLRKQ 93
VWF NRRA+ R+Q
Sbjct: 176 VWFQNRRAKWRRQ 188
>sp|O70137|ALX3_MOUSE Homeobox protein aristaless-like 3 OS=Mus musculus GN=Alx3 PE=2
SV=1
Length = 343
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 56/74 (75%), Gaps = 7/74 (9%)
Query: 27 PGIP-------LKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARV 79
PG+P K K+RR+RTTF+ QLEELE+ FQ+T YPDVY RE+LA +T LTEARV
Sbjct: 138 PGLPDSMELAKTKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARV 197
Query: 80 QVWFSNRRARLRKQ 93
QVWF NRRA+ RK+
Sbjct: 198 QVWFQNRRAKWRKR 211
>sp|Q91574|ALX1_XENLA ALX homeobox protein 1 OS=Xenopus laevis GN=alx1 PE=2 SV=1
Length = 335
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 51/60 (85%)
Query: 34 KQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93
K+RR RTTFT QLEELE+ FQ+T YPDVY RE+LA +T+LTEARVQVWF NRRA+ RK+
Sbjct: 140 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 199
>sp|Q9PVY0|RX1_CHICK Retinal homeobox protein Rx1 OS=Gallus gallus GN=RX1 PE=2 SV=1
Length = 228
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 59/77 (76%), Gaps = 4/77 (5%)
Query: 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91
K+K RR+RTTFT QL ELERAF+++ YPDVY+REELA K L E RVQVWF NRRA+ R
Sbjct: 33 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWR 92
Query: 92 KQLNSQQLNAFNSMSLH 108
+Q +++ A +SM LH
Sbjct: 93 RQ---EKMEA-SSMKLH 105
>sp|Q15699|ALX1_HUMAN ALX homeobox protein 1 OS=Homo sapiens GN=ALX1 PE=1 SV=2
Length = 326
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 51/60 (85%)
Query: 34 KQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93
K+RR RTTFT QLEELE+ FQ+T YPDVY RE+LA +T+LTEARVQVWF NRRA+ RK+
Sbjct: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
>sp|Q9PVX0|RX2_CHICK Retinal homeobox protein Rx2 OS=Gallus gallus GN=RX2 PE=2 SV=1
Length = 317
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 54/76 (71%), Gaps = 5/76 (6%)
Query: 18 GDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEA 77
G SD E K+K RR+RTTFT QL ELERAF+++ YPDVY+REELA K L E
Sbjct: 110 GKPSDEEQP-----KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEV 164
Query: 78 RVQVWFSNRRARLRKQ 93
RVQVWF NRRA+ R+Q
Sbjct: 165 RVQVWFQNRRAKWRRQ 180
>sp|Q8C8B0|ALX1_MOUSE ALX homeobox protein 1 OS=Mus musculus GN=Alx1 PE=1 SV=1
Length = 326
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 51/60 (85%)
Query: 34 KQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93
K+RR RTTFT QLEELE+ FQ+T YPDVY RE+LA +T+LTEARVQVWF NRRA+ RK+
Sbjct: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
>sp|Q63087|ALX1_RAT ALX homeobox protein 1 OS=Rattus norvegicus GN=Alx1 PE=2 SV=1
Length = 326
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 51/60 (85%)
Query: 34 KQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93
K+RR RTTFT QLEELE+ FQ+T YPDVY RE+LA +T+LTEARVQVWF NRRA+ RK+
Sbjct: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.121 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,908,647
Number of Sequences: 539616
Number of extensions: 3013355
Number of successful extensions: 9124
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 7454
Number of HSP's gapped (non-prelim): 1728
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)