Query psy1901
Match_columns 205
No_of_seqs 194 out of 1165
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 19:10:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1901.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1901hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kt0_A Nanog, homeobox protein 99.9 8.6E-22 3E-26 139.8 6.9 66 30-95 17-82 (84)
2 1fjl_A Paired protein; DNA-bin 99.9 1.5E-21 5.3E-26 137.7 8.0 68 28-95 11-78 (81)
3 2dmt_A Homeobox protein BARH-l 99.8 2.4E-21 8.3E-26 136.4 7.8 63 32-94 14-76 (80)
4 2da3_A Alpha-fetoprotein enhan 99.8 2E-21 7E-26 136.5 7.0 63 32-94 14-76 (80)
5 1nk2_P Homeobox protein VND; h 99.8 7.8E-21 2.7E-25 132.9 8.9 66 31-96 5-70 (77)
6 2cue_A Paired box protein PAX6 99.8 1.4E-20 4.7E-25 132.6 9.2 67 33-99 5-71 (80)
7 2h1k_A IPF-1, pancreatic and d 99.8 8.7E-21 3E-25 127.7 6.9 61 34-94 2-62 (63)
8 2dmu_A Homeobox protein goosec 99.8 1.3E-20 4.4E-25 129.4 7.8 62 33-94 5-66 (70)
9 2dmq_A LIM/homeobox protein LH 99.8 1.1E-20 3.9E-25 132.8 7.5 64 33-96 5-68 (80)
10 1puf_A HOX-1.7, homeobox prote 99.8 2.8E-20 9.5E-25 130.1 9.2 65 32-96 10-74 (77)
11 2dms_A Homeobox protein OTX2; 99.8 1.1E-20 3.8E-25 133.0 6.9 65 32-96 4-68 (80)
12 2cra_A Homeobox protein HOX-B1 99.8 6.1E-21 2.1E-25 131.1 5.2 63 32-94 4-66 (70)
13 1wh5_A ZF-HD homeobox family p 99.8 7.3E-21 2.5E-25 134.2 5.6 61 32-92 14-78 (80)
14 2hdd_A Protein (engrailed home 99.8 1.2E-20 4.2E-25 126.1 6.2 58 35-92 3-60 (61)
15 2da1_A Alpha-fetoprotein enhan 99.8 7.2E-21 2.5E-25 130.6 5.2 64 32-95 4-67 (70)
16 3a01_A Homeodomain-containing 99.8 2.6E-20 8.9E-25 134.9 8.4 66 32-97 14-79 (93)
17 2da4_A Hypothetical protein DK 99.8 1.1E-20 3.8E-25 133.0 6.2 62 32-93 5-70 (80)
18 1ig7_A Homeotic protein MSX-1; 99.8 2.3E-20 8E-25 123.4 7.3 57 36-92 1-57 (58)
19 2da2_A Alpha-fetoprotein enhan 99.8 1.4E-20 4.7E-25 129.2 6.3 63 32-94 4-66 (70)
20 1zq3_P PRD-4, homeotic bicoid 99.8 2.7E-20 9.2E-25 127.2 7.6 62 35-96 2-63 (68)
21 2e1o_A Homeobox protein PRH; D 99.8 3.5E-20 1.2E-24 127.3 8.0 62 33-94 5-66 (70)
22 2vi6_A Homeobox protein nanog; 99.8 8.6E-21 2.9E-25 127.3 4.9 60 34-93 2-61 (62)
23 1yz8_P Pituitary homeobox 2; D 99.8 1.1E-20 3.7E-25 129.1 5.4 63 34-96 2-64 (68)
24 1wh7_A ZF-HD homeobox family p 99.8 1.2E-20 4.1E-25 133.1 5.2 60 32-92 14-78 (80)
25 1ahd_P Antennapedia protein mu 99.8 2E-20 6.9E-25 127.8 6.1 61 35-95 2-62 (68)
26 1ftt_A TTF-1 HD, thyroid trans 99.8 1.7E-20 6E-25 128.1 5.6 62 35-96 2-63 (68)
27 2m0c_A Homeobox protein arista 99.8 1.4E-20 4.9E-25 130.6 5.1 66 31-96 5-70 (75)
28 1jgg_A Segmentation protein EV 99.8 3.7E-20 1.3E-24 123.4 6.9 58 36-93 2-59 (60)
29 2djn_A Homeobox protein DLX-5; 99.8 1.7E-20 6E-25 128.8 5.3 62 32-93 4-65 (70)
30 1b8i_A Ultrabithorax, protein 99.8 2.3E-20 7.9E-25 131.8 5.9 63 32-94 17-79 (81)
31 2l7z_A Homeobox protein HOX-A1 99.8 4.3E-20 1.5E-24 127.9 6.9 64 32-95 4-67 (73)
32 1bw5_A ISL-1HD, insulin gene e 99.8 2.2E-20 7.5E-25 126.8 5.2 61 34-94 2-62 (66)
33 2r5y_A Homeotic protein sex co 99.8 3.3E-20 1.1E-24 132.8 6.0 63 32-94 25-87 (88)
34 1akh_A Protein (mating-type pr 99.8 2.9E-20 9.8E-25 124.2 5.2 60 32-91 2-61 (61)
35 3rkq_A Homeobox protein NKX-2. 99.8 6.7E-20 2.3E-24 120.9 6.9 57 35-91 2-58 (58)
36 2k40_A Homeobox expressed in E 99.8 3.5E-20 1.2E-24 126.1 5.4 62 35-96 1-62 (67)
37 2ecc_A Homeobox and leucine zi 99.8 1E-19 3.5E-24 126.7 7.0 58 37-94 5-62 (76)
38 1b72_A Protein (homeobox prote 99.8 9.5E-20 3.3E-24 132.8 7.0 65 32-96 31-95 (97)
39 1uhs_A HOP, homeodomain only p 99.8 1.6E-19 5.6E-24 124.5 7.8 59 36-94 2-61 (72)
40 3nar_A ZHX1, zinc fingers and 99.8 5.9E-20 2E-24 133.7 5.6 64 32-95 22-85 (96)
41 2hi3_A Homeodomain-only protei 99.8 1.7E-19 5.7E-24 124.9 7.5 61 35-95 2-63 (73)
42 3a02_A Homeobox protein arista 99.8 9.4E-20 3.2E-24 121.4 5.8 58 38-95 2-59 (60)
43 2cuf_A FLJ21616 protein; homeo 99.8 1.6E-19 5.3E-24 131.2 7.4 65 32-96 4-83 (95)
44 1x2n_A Homeobox protein pknox1 99.8 1.9E-19 6.4E-24 124.5 7.1 64 32-95 4-70 (73)
45 1b72_B Protein (PBX1); homeodo 99.8 3E-19 1E-23 127.4 7.8 63 36-98 2-67 (87)
46 1puf_B PRE-B-cell leukemia tra 99.8 2.4E-19 8.1E-24 124.0 6.9 63 35-97 1-66 (73)
47 3a03_A T-cell leukemia homeobo 99.8 2.4E-19 8.1E-24 117.9 6.5 54 40-93 2-55 (56)
48 2da6_A Hepatocyte nuclear fact 99.8 6.2E-19 2.1E-23 129.1 9.1 67 32-98 3-90 (102)
49 2dn0_A Zinc fingers and homeob 99.8 1.2E-19 4.1E-24 126.6 5.1 61 35-95 8-68 (76)
50 1e3o_C Octamer-binding transcr 99.8 7.8E-20 2.7E-24 144.7 4.6 62 32-93 98-159 (160)
51 2da5_A Zinc fingers and homeob 99.8 3E-19 1E-23 124.3 6.5 59 37-95 9-67 (75)
52 2ecb_A Zinc fingers and homeob 99.8 4.8E-19 1.6E-23 127.1 6.8 57 41-97 17-73 (89)
53 2ly9_A Zinc fingers and homeob 99.8 3.8E-19 1.3E-23 123.2 5.9 61 34-94 5-65 (74)
54 1mnm_C Protein (MAT alpha-2 tr 99.8 3.8E-19 1.3E-23 127.1 5.9 60 32-91 24-86 (87)
55 2dmn_A Homeobox protein TGIF2L 99.8 6.5E-19 2.2E-23 124.9 6.9 65 32-96 4-71 (83)
56 1du6_A PBX1, homeobox protein 99.8 1.6E-19 5.6E-24 121.7 3.3 59 34-92 2-63 (64)
57 1wi3_A DNA-binding protein SAT 99.8 8.6E-19 3E-23 118.5 6.6 60 32-91 4-64 (71)
58 1k61_A Mating-type protein alp 99.8 1.1E-18 3.7E-23 116.2 6.1 56 38-93 1-59 (60)
59 1au7_A Protein PIT-1, GHF-1; c 99.8 4.5E-19 1.5E-23 138.3 4.9 63 31-93 83-145 (146)
60 2xsd_C POU domain, class 3, tr 99.7 5.5E-19 1.9E-23 140.3 4.8 65 31-95 95-159 (164)
61 1le8_B Mating-type protein alp 99.7 1.7E-18 5.9E-23 122.6 6.1 61 36-96 3-66 (83)
62 1lfb_A Liver transcription fac 99.7 6.4E-19 2.2E-23 128.9 3.9 66 31-96 5-91 (99)
63 2dmp_A Zinc fingers and homeob 99.7 4E-18 1.4E-22 122.4 7.5 56 41-96 19-74 (89)
64 2cqx_A LAG1 longevity assuranc 99.7 1.1E-18 3.7E-23 120.6 4.2 59 35-93 8-67 (72)
65 3d1n_I POU domain, class 6, tr 99.7 2.8E-18 9.4E-23 134.5 6.8 61 32-92 90-150 (151)
66 3nau_A Zinc fingers and homeob 99.7 3.7E-18 1.3E-22 115.3 6.0 52 42-93 11-62 (66)
67 2l9r_A Homeobox protein NKX-3. 99.7 2.6E-18 8.8E-23 117.8 2.9 56 40-95 9-64 (69)
68 1x2m_A LAG1 longevity assuranc 99.7 3.9E-18 1.3E-22 115.0 3.4 50 44-93 9-59 (64)
69 3l1p_A POU domain, class 5, tr 99.7 8.5E-18 2.9E-22 132.3 5.8 61 33-93 94-154 (155)
70 2e19_A Transcription factor 8; 99.7 7.3E-18 2.5E-22 113.9 4.5 53 40-92 8-60 (64)
71 2d5v_A Hepatocyte nuclear fact 99.7 1.4E-17 4.9E-22 131.9 4.5 63 32-94 94-156 (164)
72 3k2a_A Homeobox protein MEIS2; 99.7 4.7E-17 1.6E-21 110.8 5.1 57 41-97 4-63 (67)
73 1ic8_A Hepatocyte nuclear fact 99.6 1.8E-16 6.3E-21 128.8 3.2 62 31-92 111-193 (194)
74 2da7_A Zinc finger homeobox pr 99.6 2E-15 6.7E-20 102.6 5.2 46 44-89 14-59 (71)
75 2lk2_A Homeobox protein TGIF1; 99.6 7.9E-15 2.7E-19 104.8 7.5 58 40-97 10-70 (89)
76 2h8r_A Hepatocyte nuclear fact 99.5 4.1E-15 1.4E-19 122.5 5.4 62 29-90 136-218 (221)
77 1mh3_A Maltose binding-A1 home 99.4 1.5E-13 5E-18 121.2 3.2 57 35-91 365-421 (421)
78 2nzz_A Penetratin conjugated G 98.7 1.3E-09 4.6E-14 65.0 0.6 24 77-100 1-24 (37)
79 2ys9_A Homeobox and leucine zi 96.4 0.0032 1.1E-07 42.3 3.6 38 47-84 18-55 (70)
80 2glo_A Brinker CG9653-PA; prot 89.8 0.48 1.6E-05 29.8 4.3 45 39-84 3-47 (59)
81 2elh_A CG11849-PA, LD40883P; s 88.7 0.91 3.1E-05 30.9 5.5 47 33-84 14-60 (87)
82 1hlv_A CENP-B, major centromer 88.3 1.1 3.8E-05 32.3 6.1 49 38-89 4-52 (131)
83 3hug_A RNA polymerase sigma fa 87.6 1.5 5E-05 29.9 6.0 49 41-94 37-85 (92)
84 1tc3_C Protein (TC3 transposas 83.4 2.4 8.3E-05 24.3 4.8 40 41-85 5-44 (51)
85 1je8_A Nitrate/nitrite respons 82.0 1.7 5.8E-05 29.1 4.1 48 40-93 20-67 (82)
86 2o8x_A Probable RNA polymerase 81.5 1.7 5.7E-05 27.5 3.8 48 41-93 15-62 (70)
87 3c57_A Two component transcrip 79.9 3.5 0.00012 28.3 5.3 47 41-93 27-73 (95)
88 1jko_C HIN recombinase, DNA-in 79.2 1.4 4.8E-05 25.8 2.6 41 42-87 6-46 (52)
89 3mzy_A RNA polymerase sigma-H 79.1 3.8 0.00013 29.7 5.6 48 41-94 109-156 (164)
90 1fse_A GERE; helix-turn-helix 78.3 3.3 0.00011 26.3 4.5 49 39-93 9-57 (74)
91 1p4w_A RCSB; solution structur 78.3 4.2 0.00015 28.4 5.3 47 39-91 32-78 (99)
92 1x3u_A Transcriptional regulat 76.8 2.3 7.9E-05 27.6 3.4 46 42-93 17-62 (79)
93 1ku3_A Sigma factor SIGA; heli 75.7 5.8 0.0002 25.5 5.1 50 41-91 10-59 (73)
94 3ulq_B Transcriptional regulat 75.5 5.7 0.0002 27.1 5.3 48 36-89 24-71 (90)
95 2jn6_A Protein CGL2762, transp 74.5 5.1 0.00018 27.2 4.8 42 39-84 3-45 (97)
96 1fi6_A EH domain protein REPS1 74.3 4.3 0.00015 27.3 4.4 45 40-84 1-50 (92)
97 2p7v_B Sigma-70, RNA polymeras 73.7 5 0.00017 25.4 4.3 51 41-92 5-55 (68)
98 2qko_A Possible transcriptiona 71.5 1.5 5.2E-05 33.5 1.6 45 47-92 34-78 (215)
99 3dcf_A Transcriptional regulat 71.5 1.7 5.8E-05 32.8 1.9 43 46-89 36-78 (218)
100 1s7o_A Hypothetical UPF0122 pr 71.4 9.3 0.00032 27.2 5.7 48 41-93 22-69 (113)
101 1tty_A Sigma-A, RNA polymerase 70.5 5.8 0.0002 26.6 4.3 52 41-93 18-69 (87)
102 2rnj_A Response regulator prot 70.3 3.1 0.0001 28.2 2.8 48 40-93 28-75 (91)
103 2lv7_A Calcium-binding protein 70.2 7.1 0.00024 26.9 4.8 47 38-84 26-79 (100)
104 1xsv_A Hypothetical UPF0122 pr 69.1 12 0.00041 26.5 5.9 49 41-94 25-73 (113)
105 1iuf_A Centromere ABP1 protein 69.0 7.9 0.00027 28.6 5.1 50 36-85 6-59 (144)
106 1c07_A Protein (epidermal grow 68.0 6.4 0.00022 26.6 4.1 44 41-84 3-51 (95)
107 2q24_A Putative TETR family tr 67.8 2.6 9E-05 31.5 2.2 44 45-90 19-62 (194)
108 1rp3_A RNA polymerase sigma fa 67.2 9.5 0.00033 29.5 5.5 48 41-93 187-234 (239)
109 1or7_A Sigma-24, RNA polymeras 67.2 9.6 0.00033 28.6 5.4 47 42-93 141-187 (194)
110 2rn7_A IS629 ORFA; helix, all 64.3 9.6 0.00033 26.3 4.5 46 39-84 4-52 (108)
111 2pmy_A RAS and EF-hand domain- 62.1 6.1 0.00021 26.2 3.0 46 39-84 18-68 (91)
112 2jpc_A SSRB; DNA binding prote 61.3 9.7 0.00033 23.2 3.7 42 46-93 3-44 (61)
113 2x48_A CAG38821; archeal virus 60.2 11 0.00039 22.4 3.8 36 44-84 18-53 (55)
114 3t72_q RNA polymerase sigma fa 59.7 25 0.00084 24.5 5.9 54 41-95 19-72 (99)
115 2hxi_A Putative transcriptiona 59.4 8.2 0.00028 30.7 3.8 53 37-90 24-77 (241)
116 2rgt_A Fusion of LIM/homeobox 59.4 0.13 4.3E-06 39.7 -6.9 30 33-62 134-163 (169)
117 3gyk_A 27KDA outer membrane pr 58.5 43 0.0015 24.5 7.6 51 47-97 85-135 (175)
118 3fiw_A Putative TETR-family tr 58.2 3.7 0.00013 31.9 1.5 56 36-92 19-75 (211)
119 3clo_A Transcriptional regulat 56.1 12 0.00041 30.1 4.3 48 40-93 196-243 (258)
120 3i5g_B Myosin regulatory light 55.9 20 0.00068 26.2 5.2 39 38-76 6-49 (153)
121 2v57_A TETR family transcripti 55.4 4.4 0.00015 29.9 1.4 41 47-90 20-60 (190)
122 2q0o_A Probable transcriptiona 54.9 17 0.00057 28.8 4.9 48 40-93 174-221 (236)
123 2cqr_A RSGI RUH-043, DNAJ homo 54.8 42 0.0015 22.0 6.7 48 36-83 15-63 (73)
124 1u78_A TC3 transposase, transp 54.4 19 0.00066 25.4 4.8 41 40-85 5-45 (141)
125 2hin_A GP39, repressor protein 54.3 7.9 0.00027 25.5 2.4 29 65-93 13-41 (71)
126 1irz_A ARR10-B; helix-turn-hel 52.8 24 0.00082 22.8 4.5 57 36-92 4-62 (64)
127 1j7q_A CAVP, calcium vector pr 51.8 31 0.0011 21.9 5.2 44 40-83 6-59 (86)
128 2xi8_A Putative transcription 51.5 7.2 0.00025 23.7 1.8 23 65-87 17-39 (66)
129 1l3l_A Transcriptional activat 51.3 28 0.00095 27.4 5.7 47 39-91 171-217 (234)
130 3bni_A Putative TETR-family tr 51.2 3.2 0.00011 32.2 -0.0 42 47-89 49-90 (229)
131 3lph_A Protein REV; helix-loop 51.1 11 0.00036 25.1 2.6 37 47-97 18-54 (72)
132 3bd1_A CRO protein; transcript 50.8 7.1 0.00024 25.3 1.7 23 65-87 14-36 (79)
133 2r1j_L Repressor protein C2; p 50.8 7.7 0.00026 23.7 1.8 24 65-88 21-44 (68)
134 1iq3_A Ralbp1-interacting prot 50.3 6.1 0.00021 27.9 1.4 48 37-84 11-63 (110)
135 3g1o_A Transcriptional regulat 50.2 6.5 0.00022 30.8 1.7 42 47-89 49-90 (255)
136 3nxc_A HTH-type protein SLMA; 49.8 7.4 0.00025 29.0 1.9 36 52-88 36-71 (212)
137 2g7l_A TETR-family transcripti 49.7 12 0.00041 29.7 3.3 56 35-91 12-68 (243)
138 1eh2_A EPS15; calcium binding, 49.7 34 0.0012 23.8 5.3 45 39-83 6-54 (106)
139 3ccy_A Putative TETR-family tr 49.5 11 0.00038 28.1 2.9 43 46-89 19-61 (203)
140 2k27_A Paired box protein PAX- 48.6 33 0.0011 25.1 5.5 46 39-84 81-133 (159)
141 1pdn_C Protein (PRD paired); p 48.4 38 0.0013 23.1 5.5 45 40-84 74-125 (128)
142 1zug_A Phage 434 CRO protein; 48.1 8.5 0.00029 23.8 1.7 24 65-88 19-42 (71)
143 3fmy_A HTH-type transcriptiona 48.1 20 0.00067 22.9 3.6 41 40-87 9-49 (73)
144 2lfw_A PHYR sigma-like domain; 48.0 6.9 0.00024 28.9 1.5 47 41-92 93-139 (157)
145 2q1z_A RPOE, ECF SIGE; ECF sig 47.6 6.2 0.00021 29.4 1.2 46 42-92 136-181 (184)
146 2ktg_A Calmodulin, putative; e 47.6 30 0.001 21.8 4.5 45 40-84 6-57 (85)
147 2rae_A Transcriptional regulat 47.5 11 0.00039 28.0 2.7 41 46-87 22-62 (207)
148 2qtq_A Transcriptional regulat 47.2 11 0.00039 27.9 2.6 45 46-91 21-65 (213)
149 3bs3_A Putative DNA-binding pr 46.5 9.5 0.00033 24.0 1.8 23 65-87 26-48 (76)
150 3rd3_A Probable transcriptiona 46.4 7.8 0.00027 28.4 1.6 43 45-88 14-56 (197)
151 1k78_A Paired box protein PAX5 46.4 60 0.0021 23.2 6.6 49 39-87 88-143 (149)
152 1adr_A P22 C2 repressor; trans 45.6 10 0.00035 23.8 1.8 24 65-88 21-44 (76)
153 3omt_A Uncharacterized protein 45.6 10 0.00035 23.9 1.9 23 65-87 24-46 (73)
154 2hku_A A putative transcriptio 45.3 8.1 0.00028 29.2 1.5 42 47-90 26-67 (215)
155 2cqq_A RSGI RUH-037, DNAJ homo 45.2 54 0.0018 21.4 5.4 43 39-81 8-50 (72)
156 3qp6_A CVIR transcriptional re 45.0 50 0.0017 26.7 6.4 48 40-93 196-243 (265)
157 3cwr_A Transcriptional regulat 45.0 4.2 0.00014 30.2 -0.2 44 47-91 23-66 (208)
158 3gzi_A Transcriptional regulat 44.8 13 0.00045 27.8 2.7 43 47-90 23-65 (218)
159 3q0w_A HTH-type transcriptiona 44.7 6.5 0.00022 30.4 0.9 44 47-91 50-93 (236)
160 2qwt_A Transcriptional regulat 44.5 18 0.00063 26.9 3.5 40 47-88 19-58 (196)
161 2iai_A Putative transcriptiona 44.2 16 0.00054 28.0 3.1 45 46-91 35-79 (230)
162 3f0c_A TETR-molecule A, transc 43.9 9.8 0.00034 28.5 1.8 44 46-90 16-59 (216)
163 2i10_A Putative TETR transcrip 43.9 16 0.00056 27.3 3.1 47 44-91 14-60 (202)
164 2opo_A Polcalcin CHE A 3; calc 43.9 26 0.00087 22.3 3.7 44 41-84 4-53 (86)
165 3l9s_A Thiol:disulfide interch 43.8 85 0.0029 23.8 7.3 41 54-94 99-139 (191)
166 2ofy_A Putative XRE-family tra 43.7 32 0.0011 22.1 4.3 24 64-87 29-52 (86)
167 1r69_A Repressor protein CI; g 43.7 11 0.00038 23.1 1.8 24 65-88 17-40 (69)
168 2fq4_A Transcriptional regulat 43.6 6.5 0.00022 29.3 0.7 44 47-91 18-61 (192)
169 3f1b_A TETR-like transcription 43.5 5.6 0.00019 29.4 0.3 44 47-91 20-63 (203)
170 2b5a_A C.BCLI; helix-turn-heli 43.5 11 0.00038 23.7 1.8 23 65-87 26-48 (77)
171 3ppb_A Putative TETR family tr 43.3 14 0.00049 26.8 2.6 45 45-90 13-57 (195)
172 2mys_B Myosin; muscle protein, 43.1 47 0.0016 23.6 5.5 45 41-85 18-70 (166)
173 2eqr_A N-COR1, N-COR, nuclear 43.0 35 0.0012 21.3 4.1 48 35-86 8-57 (61)
174 3kz9_A SMCR; transcriptional r 42.8 9.2 0.00032 28.2 1.5 42 47-89 23-64 (206)
175 3kz3_A Repressor protein CI; f 42.6 12 0.00042 24.1 1.9 24 65-88 28-51 (80)
176 3dew_A Transcriptional regulat 42.4 7 0.00024 28.8 0.7 46 45-91 12-57 (206)
177 2np5_A Transcriptional regulat 42.4 7.2 0.00025 29.4 0.8 44 46-90 14-57 (203)
178 2rek_A Putative TETR-family tr 42.4 3 0.0001 31.3 -1.4 42 47-90 22-63 (199)
179 2kgr_A Intersectin-1; structur 42.0 29 0.001 24.0 4.0 45 39-83 5-54 (111)
180 3c3w_A Two component transcrip 41.9 30 0.001 26.5 4.4 45 40-90 148-192 (225)
181 1avs_A Troponin C; muscle cont 41.9 35 0.0012 21.9 4.2 44 41-84 13-63 (90)
182 2joj_A Centrin protein; N-term 41.8 27 0.00093 21.5 3.5 42 42-83 1-49 (77)
183 2a6c_A Helix-turn-helix motif; 41.7 14 0.00048 24.1 2.1 23 65-87 34-56 (83)
184 3on2_A Probable transcriptiona 41.5 7.5 0.00026 28.5 0.8 45 45-90 16-60 (199)
185 2oer_A Probable transcriptiona 41.2 19 0.00066 27.1 3.2 39 51-90 34-72 (214)
186 1y7y_A C.AHDI; helix-turn-heli 41.2 13 0.00044 23.1 1.8 23 65-87 29-51 (74)
187 2kvr_A Ubiquitin carboxyl-term 41.1 7.4 0.00025 28.7 0.7 23 65-87 72-94 (130)
188 2k27_A Paired box protein PAX- 41.0 38 0.0013 24.7 4.8 41 40-85 24-64 (159)
189 2hxo_A Putative TETR-family tr 40.8 21 0.00073 28.0 3.4 54 37-91 11-65 (237)
190 3szt_A QCSR, quorum-sensing co 40.4 46 0.0016 26.2 5.4 45 40-90 174-218 (237)
191 2kpj_A SOS-response transcript 40.2 13 0.00044 24.9 1.8 24 65-88 25-48 (94)
192 2wiu_B HTH-type transcriptiona 40.1 17 0.00057 23.6 2.3 23 65-87 28-50 (88)
193 1k78_A Paired box protein PAX5 39.7 32 0.0011 24.8 4.0 40 40-84 31-70 (149)
194 2zcx_A SCO7815, TETR-family tr 39.6 8.5 0.00029 30.0 0.8 44 47-91 29-72 (231)
195 1pdn_C Protein (PRD paired); p 39.5 50 0.0017 22.5 4.9 39 41-84 17-55 (128)
196 2wui_A MEXZ, transcriptional r 39.5 14 0.00046 27.9 2.0 44 47-91 17-60 (210)
197 3bru_A Regulatory protein, TET 39.4 19 0.00065 26.9 2.8 42 47-89 36-77 (222)
198 3he0_A Transcriptional regulat 39.4 16 0.00055 26.7 2.4 47 44-91 14-60 (196)
199 2x7l_M HIV REV; nuclear export 39.4 22 0.00075 25.7 2.9 37 48-98 16-52 (115)
200 2w53_A Repressor, SMet; antibi 39.3 13 0.00046 28.0 1.9 45 45-90 15-59 (219)
201 3vib_A MTRR; helix-turn-helix 39.2 8 0.00027 29.1 0.6 42 47-89 16-57 (210)
202 2oi8_A Putative regulatory pro 39.1 7.6 0.00026 29.9 0.5 43 47-90 22-64 (216)
203 3b7h_A Prophage LP1 protein 11 39.0 14 0.00048 23.3 1.7 23 65-87 23-45 (78)
204 3jsj_A Putative TETR-family tr 39.0 14 0.00047 27.1 1.9 47 44-92 12-58 (190)
205 3gl5_A Putative DSBA oxidoredu 38.8 80 0.0027 24.9 6.6 59 49-107 123-184 (239)
206 3qrx_A Centrin; calcium-bindin 38.6 47 0.0016 23.6 4.9 49 35-83 15-70 (169)
207 1u78_A TC3 transposase, transp 38.5 43 0.0015 23.5 4.6 44 41-88 60-105 (141)
208 3v6g_A Probable transcriptiona 38.3 13 0.00046 28.3 1.8 41 47-88 20-60 (208)
209 2k9q_A Uncharacterized protein 38.2 15 0.00052 23.4 1.8 23 65-87 18-40 (77)
210 1a04_A Nitrate/nitrite respons 37.5 44 0.0015 25.1 4.7 47 40-92 153-199 (215)
211 3g7r_A Putative transcriptiona 37.5 11 0.00038 28.7 1.2 43 47-90 41-83 (221)
212 2imf_A HCCA isomerase, 2-hydro 37.0 91 0.0031 23.5 6.5 42 52-93 112-154 (203)
213 2in3_A Hypothetical protein; D 36.8 1.3E+02 0.0045 22.5 7.5 38 56-93 125-163 (216)
214 2dg8_A Putative TETR-family tr 36.5 11 0.00038 27.9 1.0 46 44-90 12-57 (193)
215 1y66_A Engrailed homeodomain; 35.9 6 0.0002 23.7 -0.5 44 42-85 4-47 (52)
216 3o9x_A Uncharacterized HTH-typ 35.9 28 0.00096 24.7 3.2 40 41-87 70-109 (133)
217 2dg7_A Putative transcriptiona 35.8 18 0.00061 26.7 2.1 43 45-88 11-53 (195)
218 3l9v_A Putative thiol-disulfid 35.8 1.3E+02 0.0044 22.5 7.2 45 49-93 87-132 (189)
219 2ict_A Antitoxin HIGA; helix-t 35.5 17 0.00059 24.1 1.8 23 65-87 24-46 (94)
220 2qib_A TETR-family transcripti 35.3 7.7 0.00026 30.0 -0.1 44 47-91 19-62 (231)
221 3fz5_A Possible 2-hydroxychrom 35.3 93 0.0032 23.6 6.3 48 54-101 120-168 (202)
222 2ef8_A C.ECOT38IS, putative tr 35.3 18 0.00061 23.1 1.8 23 65-87 26-48 (84)
223 2jml_A DNA binding domain/tran 35.0 20 0.00067 23.6 2.0 21 64-84 7-27 (81)
224 1rzs_A Antirepressor, regulato 34.9 18 0.00063 22.4 1.7 19 65-83 13-31 (61)
225 2guh_A Putative TETR-family tr 34.8 8.3 0.00028 29.6 0.0 44 47-91 45-88 (214)
226 1l0o_C Sigma factor; bergerat 34.7 8.2 0.00028 29.8 0.0 44 41-89 198-241 (243)
227 3f6w_A XRE-family like protein 34.7 19 0.00064 23.1 1.8 23 65-87 30-52 (83)
228 3lwj_A Putative TETR-family tr 34.7 8.3 0.00028 28.6 0.0 43 47-90 18-60 (202)
229 3fwb_A Cell division control p 34.6 76 0.0026 22.1 5.4 47 37-83 12-65 (161)
230 1dtl_A Cardiac troponin C; hel 34.3 52 0.0018 23.0 4.5 45 40-84 10-62 (161)
231 2pz9_A Putative regulatory pro 34.2 7.5 0.00026 29.9 -0.3 46 46-92 35-80 (226)
232 1ity_A TRF1; helix-turn-helix, 34.0 53 0.0018 20.9 3.9 40 32-74 3-42 (69)
233 1j9i_A GPNU1 DBD;, terminase s 33.4 24 0.00084 22.2 2.2 21 65-85 5-25 (68)
234 1pb6_A Hypothetical transcript 33.4 9.2 0.00032 28.5 0.1 44 47-91 24-67 (212)
235 3kzq_A Putative uncharacterize 33.4 1.5E+02 0.0053 22.3 7.6 41 53-93 115-156 (208)
236 3j04_B Myosin regulatory light 32.9 86 0.0029 21.4 5.4 44 42-85 1-51 (143)
237 3s5r_A Transcriptional regulat 32.9 19 0.00064 26.8 1.8 45 45-90 14-58 (216)
238 1wdc_B Scallop myosin; calcium 32.7 87 0.003 21.8 5.5 46 40-85 10-62 (156)
239 2lhi_A Calmodulin, serine/thre 32.6 29 0.00099 25.9 2.9 36 40-75 3-43 (176)
240 2np3_A Putative TETR-family re 32.6 10 0.00036 28.5 0.3 44 46-90 35-78 (212)
241 3bdn_A Lambda repressor; repre 32.5 34 0.0011 26.7 3.3 23 65-87 33-55 (236)
242 2ovk_B RLC, myosin regulatory 32.5 64 0.0022 22.5 4.7 47 38-84 6-59 (153)
243 2yve_A Transcriptional regulat 32.3 29 0.00098 25.5 2.8 44 46-90 9-52 (185)
244 3him_A Probable transcriptiona 32.1 13 0.00045 27.4 0.8 45 45-90 20-64 (211)
245 1lmb_3 Protein (lambda repress 31.6 22 0.00077 23.2 1.8 23 65-87 33-55 (92)
246 3t76_A VANU, transcriptional r 31.5 21 0.00073 24.1 1.7 23 65-87 40-62 (88)
247 3knw_A Putative transcriptiona 31.4 12 0.00043 27.7 0.5 41 47-88 20-60 (212)
248 2gqb_A Conserved hypothetical 31.4 45 0.0015 24.6 3.5 28 59-86 80-112 (130)
249 2mys_C Myosin; muscle protein, 31.4 83 0.0028 21.5 5.1 43 42-84 2-51 (149)
250 3c07_A Putative TETR-family tr 31.4 11 0.00036 30.4 0.1 43 47-90 47-89 (273)
251 2kn2_A Calmodulin; S MAPK phos 30.7 61 0.0021 20.6 4.0 42 43-84 4-52 (92)
252 3aqt_A Bacterial regulatory pr 30.5 5.7 0.00019 31.1 -1.6 44 47-91 52-95 (245)
253 3s8q_A R-M controller protein; 30.3 23 0.0008 22.6 1.7 23 65-87 27-49 (82)
254 3fia_A Intersectin-1; EH 1 dom 30.3 75 0.0026 22.9 4.6 44 37-80 22-69 (121)
255 3qq6_A HTH-type transcriptiona 30.3 23 0.0008 22.7 1.7 21 65-85 26-46 (78)
256 2pij_A Prophage PFL 6 CRO; tra 30.2 26 0.00088 21.5 1.9 21 65-85 16-36 (67)
257 1x57_A Endothelial differentia 30.1 24 0.00083 23.1 1.8 23 65-87 29-51 (91)
258 2d6y_A Putative TETR family re 30.0 24 0.00081 26.4 2.0 45 46-91 13-57 (202)
259 2bnk_A Early protein GP16.7; D 29.9 1.1E+02 0.0037 19.5 4.6 53 42-94 5-57 (67)
260 2l49_A C protein; P2 bacteriop 29.7 25 0.00084 23.4 1.8 24 65-88 20-43 (99)
261 3npi_A TETR family regulatory 29.6 11 0.00039 29.3 0.0 44 46-90 23-66 (251)
262 2v79_A DNA replication protein 29.5 79 0.0027 23.0 4.7 45 42-89 30-78 (135)
263 3bci_A Disulfide bond protein 29.5 1.7E+02 0.0057 21.5 7.4 43 47-89 80-132 (186)
264 3col_A Putative transcription 29.4 15 0.00051 26.7 0.7 45 45-90 14-58 (196)
265 2pjp_A Selenocysteine-specific 29.2 48 0.0016 23.4 3.4 41 43-84 2-42 (121)
266 3b81_A Transcriptional regulat 29.2 11 0.00039 27.7 -0.0 44 46-90 16-59 (203)
267 3dpj_A Transcription regulator 29.1 13 0.00046 27.2 0.4 44 47-91 14-57 (194)
268 3i5g_C Myosin catalytic light 29.0 47 0.0016 24.2 3.5 42 41-82 2-52 (159)
269 4ich_A Transcriptional regulat 29.0 11 0.00037 30.8 -0.2 42 48-90 127-168 (311)
270 3u0k_A Rcamp; fluorescent prot 29.0 62 0.0021 28.8 4.7 46 38-83 292-344 (440)
271 2jrt_A Uncharacterized protein 28.6 74 0.0025 21.9 4.2 40 41-84 32-71 (95)
272 1aih_A HP1 integrase; DNA inte 28.6 1.3E+02 0.0044 21.5 5.9 43 37-79 2-44 (170)
273 3f4s_A Alpha-DSBA1, putative u 28.5 1.2E+02 0.004 23.8 6.0 48 47-94 105-158 (226)
274 2dk5_A DNA-directed RNA polyme 28.3 84 0.0029 21.3 4.4 43 40-84 16-58 (91)
275 1zk8_A Transcriptional regulat 28.3 24 0.00083 25.5 1.7 45 46-91 13-57 (183)
276 3c2b_A Transcriptional regulat 28.2 14 0.00048 27.8 0.3 45 47-92 21-65 (221)
277 3kkd_A Transcriptional regulat 28.0 14 0.00049 28.3 0.4 43 47-90 41-83 (237)
278 2g7g_A RHA04620, putative tran 28.0 23 0.00078 27.2 1.6 48 41-91 10-58 (213)
279 2din_A Cell division cycle 5-l 27.7 1.1E+02 0.0039 19.0 6.0 52 37-92 7-58 (66)
280 3ox6_A Calcium-binding protein 27.5 1.4E+02 0.0048 20.2 5.7 43 41-83 4-53 (153)
281 3qkx_A Uncharacterized HTH-typ 27.3 19 0.00065 26.0 0.9 45 46-91 13-57 (188)
282 2iu5_A DHAS, YCEG, HTH-type dh 27.2 40 0.0014 24.8 2.8 47 46-93 18-64 (195)
283 2ppx_A AGR_C_3184P, uncharacte 27.1 29 0.00099 23.3 1.8 23 65-87 46-68 (99)
284 2ewt_A BLDD, putative DNA-bind 26.9 32 0.0011 21.1 1.9 23 65-87 24-48 (71)
285 3vpr_A Transcriptional regulat 26.8 42 0.0014 24.5 2.8 43 47-90 9-51 (190)
286 2f07_A YVDT; helix-turn-helix, 26.6 35 0.0012 25.3 2.4 43 46-89 15-57 (197)
287 3trb_A Virulence-associated pr 26.5 64 0.0022 22.2 3.6 19 58-76 52-70 (104)
288 1t33_A Putative transcriptiona 26.4 24 0.00081 26.5 1.4 42 47-90 18-59 (224)
289 1yio_A Response regulatory pro 26.2 1E+02 0.0034 22.8 5.0 45 41-91 142-186 (208)
290 2gen_A Probable transcriptiona 25.9 37 0.0013 25.1 2.4 44 46-90 12-55 (197)
291 3bqz_B HTH-type transcriptiona 25.8 49 0.0017 23.9 3.0 44 46-90 7-50 (194)
292 1g2h_A Transcriptional regulat 25.8 1.1E+02 0.0039 18.7 4.4 37 42-83 18-54 (61)
293 2zcm_A Biofilm operon icaabcd 25.7 46 0.0016 24.2 2.9 46 45-91 11-56 (192)
294 3op9_A PLI0006 protein; struct 25.6 32 0.0011 23.6 1.8 23 65-87 25-47 (114)
295 3lsg_A Two-component response 25.6 45 0.0015 22.4 2.6 24 63-86 20-43 (103)
296 3kkc_A TETR family transcripti 25.5 45 0.0015 23.8 2.7 47 46-93 17-63 (177)
297 2zb9_A Putative transcriptiona 25.3 8.9 0.0003 28.9 -1.3 44 47-91 29-72 (214)
298 3hd5_A Thiol:disulfide interch 25.2 2.1E+02 0.007 21.1 8.0 46 49-94 93-139 (195)
299 2xdn_A HTH-type transcriptiona 25.1 34 0.0012 25.4 2.1 43 47-90 17-59 (210)
300 3qbm_A TETR transcriptional re 24.9 35 0.0012 24.7 2.1 43 47-90 13-55 (199)
301 3plu_A Ubiquitin-like modifier 24.7 25 0.00084 24.5 1.0 28 63-90 46-73 (93)
302 3on4_A Transcriptional regulat 24.4 30 0.001 25.0 1.5 44 46-90 15-58 (191)
303 3vk0_A NHTF, transcriptional r 24.4 33 0.0011 23.7 1.7 23 65-87 37-59 (114)
304 2fjr_A Repressor protein CI; g 24.3 64 0.0022 24.0 3.5 25 64-88 22-46 (189)
305 3egq_A TETR family transcripti 24.3 47 0.0016 23.6 2.6 45 47-92 10-54 (170)
306 2y2z_A SIM16, SIMR, putative r 24.2 44 0.0015 26.9 2.7 51 41-92 26-77 (267)
307 1ui5_A A-factor receptor homol 24.1 39 0.0013 25.5 2.3 45 45-90 13-57 (215)
308 3hz8_A Thiol:disulfide interch 23.6 2.3E+02 0.0079 21.1 7.3 44 50-93 96-141 (193)
309 4aci_A HTH-type transcriptiona 23.5 11 0.00039 27.5 -1.0 43 47-90 20-62 (191)
310 3g5g_A Regulatory protein; tra 23.4 37 0.0013 23.1 1.8 23 65-87 44-66 (99)
311 1uxc_A FRUR (1-57), fructose r 23.3 43 0.0015 21.2 2.0 23 65-87 3-25 (65)
312 2ras_A Transcriptional regulat 23.2 39 0.0013 25.0 2.1 43 47-90 17-59 (212)
313 3eus_A DNA-binding protein; st 23.1 40 0.0014 22.0 1.9 23 65-87 30-52 (86)
314 3mlf_A Transcriptional regulat 23.1 40 0.0014 23.4 1.9 23 65-87 39-61 (111)
315 1exr_A Calmodulin; high resolu 22.9 1.3E+02 0.0043 20.8 4.8 43 41-83 3-52 (148)
316 1l9z_H Sigma factor SIGA; heli 22.8 1.2E+02 0.0042 26.7 5.5 50 41-91 375-424 (438)
317 3mvp_A TETR/ACRR transcription 22.8 14 0.00049 27.4 -0.6 43 47-90 32-74 (217)
318 2o7t_A Transcriptional regulat 22.7 48 0.0016 24.3 2.5 41 47-88 14-54 (199)
319 1qjt_A EH1, epidermal growth f 22.7 42 0.0014 22.7 2.0 36 49-84 12-52 (99)
320 3cjd_A Transcriptional regulat 22.7 16 0.00054 27.4 -0.3 44 46-90 17-60 (198)
321 3vp5_A Transcriptional regulat 22.6 63 0.0022 23.7 3.2 44 46-90 17-60 (189)
322 2cw1_A SN4M; lambda CRO fold, 22.6 40 0.0014 21.6 1.7 21 64-84 15-35 (65)
323 3klo_A Transcriptional regulat 22.3 83 0.0028 23.8 3.9 44 41-90 159-202 (225)
324 1qgp_A Protein (double strande 22.3 26 0.0009 23.0 0.8 36 47-83 17-52 (77)
325 2jvl_A TRMBF1; coactivator, he 22.2 40 0.0014 23.2 1.8 23 65-87 52-74 (107)
326 2hyt_A TETR-family transcripti 22.1 45 0.0015 24.5 2.2 42 47-89 18-59 (197)
327 3anp_C Transcriptional repress 21.9 46 0.0016 24.5 2.3 44 46-90 14-57 (204)
328 3cec_A Putative antidote prote 21.7 43 0.0015 22.5 1.8 23 65-87 34-56 (104)
329 3cdl_A Transcriptional regulat 21.6 57 0.0019 24.1 2.7 45 47-92 15-59 (203)
330 2fd5_A Transcriptional regulat 21.5 67 0.0023 23.0 3.0 44 47-91 13-56 (180)
331 1sgm_A Putative HTH-type trans 21.4 37 0.0013 24.5 1.5 43 45-88 10-53 (191)
332 2eh3_A Transcriptional regulat 21.4 48 0.0017 23.9 2.2 44 47-91 8-51 (179)
333 1vi0_A Transcriptional regulat 21.1 34 0.0012 25.6 1.3 43 46-89 13-55 (206)
334 3crj_A Transcription regulator 21.0 57 0.0019 24.1 2.6 44 47-91 20-63 (199)
335 3f52_A CLP gene regulator (CLG 20.9 46 0.0016 22.9 1.9 23 65-87 44-66 (117)
336 2ibd_A Possible transcriptiona 20.9 51 0.0017 24.4 2.3 42 47-89 20-61 (204)
337 3lhq_A Acrab operon repressor 20.9 50 0.0017 24.2 2.2 43 46-89 19-61 (220)
338 1r8d_A Transcription activator 20.8 50 0.0017 22.9 2.1 20 65-84 5-24 (109)
339 2eby_A Putative HTH-type trans 20.7 46 0.0016 22.7 1.8 23 65-87 27-49 (113)
340 2vz4_A Tipal, HTH-type transcr 20.6 50 0.0017 22.8 2.0 20 65-84 4-23 (108)
341 1qbj_A Protein (double-strande 20.5 41 0.0014 22.5 1.4 37 46-83 12-48 (81)
342 3gha_A Disulfide bond formatio 20.5 2.8E+02 0.0096 20.9 6.7 43 50-92 101-149 (202)
343 1b0n_A Protein (SINR protein); 20.3 46 0.0016 22.3 1.8 21 65-85 17-37 (111)
344 1rkt_A Protein YFIR; transcrip 20.3 50 0.0017 24.4 2.1 44 47-91 18-61 (205)
345 3ivp_A Putative transposon-rel 20.2 44 0.0015 23.3 1.7 23 65-87 28-50 (126)
346 2hyj_A Putative TETR-family tr 20.2 15 0.00051 27.5 -1.0 42 48-90 19-60 (200)
347 1yx7_A Calsensin, LAN3-6 antig 20.2 50 0.0017 20.5 1.8 25 57-81 21-49 (83)
348 2a6h_F RNA polymerase sigma fa 20.1 1.1E+02 0.0036 26.7 4.5 50 41-91 360-409 (423)
349 3bjb_A Probable transcriptiona 20.0 48 0.0016 24.8 2.0 44 47-91 28-71 (207)
No 1
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.85 E-value=8.6e-22 Score=139.83 Aligned_cols=66 Identities=29% Similarity=0.514 Sum_probs=61.7
Q ss_pred CccCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHh
Q psy1901 30 PLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLN 95 (205)
Q Consensus 30 ~~~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~ 95 (205)
...+++||.|+.|+.+|+.+||.+|..++||+..+|.+||..|||++++|+|||||||+|+||..+
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 346788899999999999999999999999999999999999999999999999999999998753
No 2
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.85 E-value=1.5e-21 Score=137.72 Aligned_cols=68 Identities=81% Similarity=1.212 Sum_probs=60.0
Q ss_pred CCCccCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHh
Q psy1901 28 GIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLN 95 (205)
Q Consensus 28 ~~~~~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~ 95 (205)
+...++++||+|+.|+.+|+.+||.+|..++||+..+|.+||..|||++++|++||||||+|+|++..
T Consensus 11 ~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 11 GIALKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp ------CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 44456788999999999999999999999999999999999999999999999999999999999854
No 3
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.4e-21 Score=136.44 Aligned_cols=63 Identities=38% Similarity=0.614 Sum_probs=60.1
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHH
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 94 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~ 94 (205)
.++.||.|+.|+.+|+.+||.+|..++||+..+|.+||..|||++++|+|||||||+|+||..
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 567788999999999999999999999999999999999999999999999999999999863
No 4
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.84 E-value=2e-21 Score=136.54 Aligned_cols=63 Identities=37% Similarity=0.500 Sum_probs=60.1
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHH
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 94 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~ 94 (205)
.+++||.|+.|+.+|+.+||.+|..++||+..++.+||.+|||++.+|++||||||+|+||..
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 567788999999999999999999999999999999999999999999999999999999863
No 5
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.84 E-value=7.8e-21 Score=132.90 Aligned_cols=66 Identities=38% Similarity=0.628 Sum_probs=61.7
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhH
Q psy1901 31 LKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNS 96 (205)
Q Consensus 31 ~~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~ 96 (205)
..+++||.|+.|+.+|+.+||..|..++||+..+|.+||..|||++++|+|||||||+|+|+....
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 356778889999999999999999999999999999999999999999999999999999997654
No 6
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=1.4e-20 Score=132.58 Aligned_cols=67 Identities=52% Similarity=0.896 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhHHHh
Q psy1901 33 RKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNSQQL 99 (205)
Q Consensus 33 ~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~~~~ 99 (205)
.++||+|+.|+.+|+.+||.+|..++||+..+|.+||..|||++++|+|||||||+|+|+..+....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~~ 71 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQ 71 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhhc
Confidence 5678899999999999999999999999999999999999999999999999999999998766543
No 7
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.83 E-value=8.7e-21 Score=127.70 Aligned_cols=61 Identities=39% Similarity=0.624 Sum_probs=56.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHH
Q psy1901 34 KQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 94 (205)
Q Consensus 34 k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~ 94 (205)
+.||.|+.|+.+|+.+||..|..++||+..++.+||..|||++++|++||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 4678899999999999999999999999999999999999999999999999999999863
No 8
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=129.38 Aligned_cols=62 Identities=56% Similarity=0.873 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHH
Q psy1901 33 RKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 94 (205)
Q Consensus 33 ~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~ 94 (205)
.+.||+|+.|+.+|+.+||.+|..++||+..++.+||..|||++++|++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 56688999999999999999999999999999999999999999999999999999999974
No 9
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=132.82 Aligned_cols=64 Identities=39% Similarity=0.605 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhH
Q psy1901 33 RKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNS 96 (205)
Q Consensus 33 ~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~ 96 (205)
.++||+|+.|+.+|+.+||.+|..++||+..++.+||.+|||++++|++||||||+|+||+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999998654
No 10
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.82 E-value=2.8e-20 Score=130.08 Aligned_cols=65 Identities=35% Similarity=0.550 Sum_probs=61.3
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhH
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNS 96 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~ 96 (205)
.++.+|+|+.|+.+|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+|+..+.
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 46678899999999999999999999999999999999999999999999999999999998654
No 11
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=1.1e-20 Score=133.00 Aligned_cols=65 Identities=54% Similarity=0.856 Sum_probs=61.2
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhH
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNS 96 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~ 96 (205)
.++.||+|+.|+.+|+.+||.+|..++||+..+|.+||..|||++++|+|||||||+|+|+....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 46778899999999999999999999999999999999999999999999999999999998544
No 12
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=6.1e-21 Score=131.08 Aligned_cols=63 Identities=29% Similarity=0.568 Sum_probs=59.6
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHH
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 94 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~ 94 (205)
..+.||+|+.|+.+|+.+||..|..++||+..++.+||..|||++++|++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 356788999999999999999999999999999999999999999999999999999999864
No 13
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.82 E-value=7.3e-21 Score=134.19 Aligned_cols=61 Identities=25% Similarity=0.337 Sum_probs=57.8
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhc----CCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHH
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQR----TQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~----~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 92 (205)
.+++||+|+.|+.+|+.+||.+|.. ++||+..+|++||..|||++++|+|||||||+|.|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 4677889999999999999999999 999999999999999999999999999999999764
No 14
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.82 E-value=1.2e-20 Score=126.15 Aligned_cols=58 Identities=36% Similarity=0.780 Sum_probs=53.3
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHH
Q psy1901 35 QRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92 (205)
Q Consensus 35 ~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 92 (205)
.||.|+.|+.+|+.+||..|..++||+..++.+||..|||++.+|++||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5788999999999999999999999999999999999999999999999999999987
No 15
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=7.2e-21 Score=130.58 Aligned_cols=64 Identities=28% Similarity=0.404 Sum_probs=60.2
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHh
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLN 95 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~ 95 (205)
.++.||+|+.|+.+|+.+||.+|..++||+..++.+||..|||++.+|++||||||+|+|+..+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 4667889999999999999999999999999999999999999999999999999999998743
No 16
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.82 E-value=2.6e-20 Score=134.86 Aligned_cols=66 Identities=38% Similarity=0.669 Sum_probs=61.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhHH
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNSQ 97 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~~ 97 (205)
..++||+|+.|+.+|+.+||..|..++||+..+|.+||..|||++++|+|||||||+|+|+....+
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 467788999999999999999999999999999999999999999999999999999999986554
No 17
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=133.00 Aligned_cols=62 Identities=21% Similarity=0.300 Sum_probs=59.5
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhcC----CCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQRT----QYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~~----~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
.+++||.|+.|+.+|+.+||.+|..+ +||+..+|++||.+|||++++|+|||||||+|+|+.
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 46778899999999999999999999 999999999999999999999999999999999986
No 18
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.82 E-value=2.3e-20 Score=123.41 Aligned_cols=57 Identities=44% Similarity=0.779 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHH
Q psy1901 36 RRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92 (205)
Q Consensus 36 rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 92 (205)
||+|+.|+.+|+.+||..|..++||+..++.+||..|||++++|++||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999999999999999999999999999999999999987
No 19
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=129.19 Aligned_cols=63 Identities=35% Similarity=0.479 Sum_probs=59.7
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHH
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 94 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~ 94 (205)
.++.||+|+.|+.+|+.+||.+|..++||+..++.+||..|||++.+|++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 456788999999999999999999999999999999999999999999999999999999864
No 20
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.82 E-value=2.7e-20 Score=127.18 Aligned_cols=62 Identities=40% Similarity=0.644 Sum_probs=59.2
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhH
Q psy1901 35 QRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNS 96 (205)
Q Consensus 35 ~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~ 96 (205)
+||.|+.|+.+|+.+||..|..++||+..++.+||..|||++++|++||||||+|+|+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 57899999999999999999999999999999999999999999999999999999998654
No 21
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=3.5e-20 Score=127.28 Aligned_cols=62 Identities=34% Similarity=0.588 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHH
Q psy1901 33 RKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 94 (205)
Q Consensus 33 ~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~ 94 (205)
.+.+++|+.|+.+|+.+||.+|..++||+..++.+||..|||++++|++||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 45677889999999999999999999999999999999999999999999999999999974
No 22
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.82 E-value=8.6e-21 Score=127.28 Aligned_cols=60 Identities=28% Similarity=0.537 Sum_probs=53.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 34 KQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 34 k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
+++|.|+.|+.+|+.+||..|..++||+..++.+||..|||++.+|++||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 567889999999999999999999999999999999999999999999999999999885
No 23
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.82 E-value=1.1e-20 Score=129.12 Aligned_cols=63 Identities=60% Similarity=0.904 Sum_probs=59.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhH
Q psy1901 34 KQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNS 96 (205)
Q Consensus 34 k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~ 96 (205)
++||.|+.|+.+|+.+||..|..++||+..++.+||..|||++.+|++||||||+|+|+..+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 568899999999999999999999999999999999999999999999999999999998654
No 24
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.81 E-value=1.2e-20 Score=133.06 Aligned_cols=60 Identities=25% Similarity=0.384 Sum_probs=56.5
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhc-----CCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHH
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQR-----TQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~-----~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 92 (205)
..++||+|+.|+.+|+.+|| .|.. ++||+..+|++||.+|||++++|+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 46778899999999999999 7999 999999999999999999999999999999999764
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.81 E-value=2e-20 Score=127.83 Aligned_cols=61 Identities=36% Similarity=0.611 Sum_probs=58.4
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHh
Q psy1901 35 QRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLN 95 (205)
Q Consensus 35 ~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~ 95 (205)
+||.|+.|+.+|+.+||..|..++||+..++.+||..|||++++|++||||||+|+|+..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 5788999999999999999999999999999999999999999999999999999999854
No 26
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.81 E-value=1.7e-20 Score=128.11 Aligned_cols=62 Identities=35% Similarity=0.660 Sum_probs=59.0
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhH
Q psy1901 35 QRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNS 96 (205)
Q Consensus 35 ~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~ 96 (205)
+||.|+.|+.+|+.+||..|..++||+..++.+||..|||++++|++||||||+|+|+..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 57889999999999999999999999999999999999999999999999999999998644
No 27
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-20 Score=130.57 Aligned_cols=66 Identities=67% Similarity=0.980 Sum_probs=61.5
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhH
Q psy1901 31 LKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNS 96 (205)
Q Consensus 31 ~~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~ 96 (205)
.+++++|.|+.|+.+|+.+||..|..++||+..++.+||..|||++.+|++||||||+|+|++.+.
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhh
Confidence 356778899999999999999999999999999999999999999999999999999999987543
No 28
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.81 E-value=3.7e-20 Score=123.38 Aligned_cols=58 Identities=45% Similarity=0.717 Sum_probs=55.6
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 36 RRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 36 rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
||.|+.|+.+|+.+||..|..++||+..++.+||..|||++.+|++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999985
No 29
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-20 Score=128.77 Aligned_cols=62 Identities=39% Similarity=0.691 Sum_probs=59.1
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
..+.||+|+.|+.+|+.+||.+|..++||+..++.+||..|||++++|++||||||+|+||.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 45678899999999999999999999999999999999999999999999999999999886
No 30
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.81 E-value=2.3e-20 Score=131.78 Aligned_cols=63 Identities=38% Similarity=0.655 Sum_probs=54.7
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHH
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 94 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~ 94 (205)
.+++||+|+.|+.+|+.+||..|..++||+..+|.+||..|||++++|+|||||||+|+||..
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 356688999999999999999999999999999999999999999999999999999999874
No 31
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.81 E-value=4.3e-20 Score=127.88 Aligned_cols=64 Identities=33% Similarity=0.604 Sum_probs=60.2
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHh
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLN 95 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~ 95 (205)
..+.||+|+.|+.+|+.+||..|..++||+..++.+||..|||++++|++||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 4567889999999999999999999999999999999999999999999999999999998743
No 32
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.81 E-value=2.2e-20 Score=126.79 Aligned_cols=61 Identities=31% Similarity=0.567 Sum_probs=58.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHH
Q psy1901 34 KQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 94 (205)
Q Consensus 34 k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~ 94 (205)
++||.|+.|+.+|+.+||.+|..++||+..++.+||..|||++.+|++||||||+|+|+..
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4688999999999999999999999999999999999999999999999999999998864
No 33
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.80 E-value=3.3e-20 Score=132.84 Aligned_cols=63 Identities=35% Similarity=0.597 Sum_probs=55.5
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHH
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 94 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~ 94 (205)
.++.||+|+.|+.+|+.+||..|..++||+..+|.+||..|||++++|+|||||||+|+||..
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 456788999999999999999999999999999999999999999999999999999999864
No 34
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.80 E-value=2.9e-20 Score=124.21 Aligned_cols=60 Identities=32% Similarity=0.529 Sum_probs=48.5
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
+++++|.|+.|+.+|+.+||.+|..++||+..++.+||..|||++.+|++||||||+|+|
T Consensus 2 k~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 2 KEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 456788999999999999999999999999999999999999999999999999999875
No 35
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.80 E-value=6.7e-20 Score=120.90 Aligned_cols=57 Identities=39% Similarity=0.701 Sum_probs=54.8
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 35 QRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 35 ~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
+||.|+.|+.+|+.+||..|..++||+..++.+||..|||++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 567899999999999999999999999999999999999999999999999999975
No 36
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.80 E-value=3.5e-20 Score=126.15 Aligned_cols=62 Identities=45% Similarity=0.755 Sum_probs=58.4
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhH
Q psy1901 35 QRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNS 96 (205)
Q Consensus 35 ~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~ 96 (205)
+||+|+.|+.+|+.+||..|..++||+..++.+||..|||++++|++||||||+|+|+....
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 37889999999999999999999999999999999999999999999999999999987543
No 37
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=1e-19 Score=126.73 Aligned_cols=58 Identities=26% Similarity=0.341 Sum_probs=54.5
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHH
Q psy1901 37 RSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 94 (205)
Q Consensus 37 r~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~ 94 (205)
.+|..|+.+|+.+||+.|..|+||+..+|++||..+||++.||+|||||||+|+|+..
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 3456699999999999999999999999999999999999999999999999999874
No 38
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=9.5e-20 Score=132.77 Aligned_cols=65 Identities=35% Similarity=0.555 Sum_probs=56.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhH
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNS 96 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~ 96 (205)
..+.+++|+.|+.+|+.+||..|..++||+..+|.+||..|||++++|+|||||||+|+|+..+.
T Consensus 31 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 31 LGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 35678889999999999999999999999999999999999999999999999999999998653
No 39
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=1.6e-19 Score=124.54 Aligned_cols=59 Identities=36% Similarity=0.481 Sum_probs=56.5
Q ss_pred CCCCCCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHH
Q psy1901 36 RRSRTTFTGDQLEELERAFQR-TQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 94 (205)
Q Consensus 36 rr~R~~~s~~q~~~Le~~F~~-~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~ 94 (205)
.++|+.|+.+|+.+||..|.. ++||+..+|.+||..|||++++|++||||||+|+|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 578899999999999999996 99999999999999999999999999999999999975
No 40
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.79 E-value=5.9e-20 Score=133.67 Aligned_cols=64 Identities=27% Similarity=0.380 Sum_probs=56.8
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHh
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLN 95 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~ 95 (205)
..+.+|+|+.|+.+|+.+||..|..++||+..+|++||.+|||++++|++||||||+|+||...
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 4566788999999999999999999999999999999999999999999999999999998743
No 41
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=1.7e-19 Score=124.87 Aligned_cols=61 Identities=33% Similarity=0.427 Sum_probs=57.2
Q ss_pred CCCCCCCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHh
Q psy1901 35 QRRSRTTFTGDQLEELERAFQR-TQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLN 95 (205)
Q Consensus 35 ~rr~R~~~s~~q~~~Le~~F~~-~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~ 95 (205)
.+++|+.|+.+|+.+||..|.. ++||+..+|.+||..|||++++|++||||||+|+|+...
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 3578899999999999999995 999999999999999999999999999999999999753
No 42
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.79 E-value=9.4e-20 Score=121.40 Aligned_cols=58 Identities=71% Similarity=1.012 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHh
Q psy1901 38 SRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLN 95 (205)
Q Consensus 38 ~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~ 95 (205)
.|+.|+.+|+.+||..|..++||+..++.+||..|||++++|++||||||+|+|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 4789999999999999999999999999999999999999999999999999998753
No 43
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=1.6e-19 Score=131.16 Aligned_cols=65 Identities=35% Similarity=0.585 Sum_probs=61.6
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhC---------------CchhhhhhhhhchHHHHHHHHhH
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTK---------------LTEARVQVWFSNRRARLRKQLNS 96 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~---------------l~~~qV~~WFqNrR~k~kr~~~~ 96 (205)
.+++||.|+.|+.+|+.+||.+|..++||+..+|++||..|| |++.+|++||||||+|+|++.+.
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 467789999999999999999999999999999999999999 99999999999999999998654
No 44
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=1.9e-19 Score=124.52 Aligned_cols=64 Identities=20% Similarity=0.332 Sum_probs=59.5
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHh
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQR---TQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLN 95 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~---~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~ 95 (205)
.++.|++|+.|+.+|+.+||.+|.. ++||+..++++||.++||++.||++||||+|+|+|+...
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 4567888999999999999999976 999999999999999999999999999999999998743
No 45
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.78 E-value=3e-19 Score=127.42 Aligned_cols=63 Identities=37% Similarity=0.610 Sum_probs=58.5
Q ss_pred CCCCCCCCHHHHHHHHHHh---hcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhHHH
Q psy1901 36 RRSRTTFTGDQLEELERAF---QRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNSQQ 98 (205)
Q Consensus 36 rr~R~~~s~~q~~~Le~~F---~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~~~ 98 (205)
||+|+.|+.+|+.+||.+| ..++||+..++.+||..|||++.||++||||||+|+|+......
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 67 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGGH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccccc
Confidence 6889999999999999999 89999999999999999999999999999999999999865543
No 46
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.78 E-value=2.4e-19 Score=124.00 Aligned_cols=63 Identities=35% Similarity=0.595 Sum_probs=58.9
Q ss_pred CCCCCCCCCHHHHHHHHHHh---hcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhHH
Q psy1901 35 QRRSRTTFTGDQLEELERAF---QRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNSQ 97 (205)
Q Consensus 35 ~rr~R~~~s~~q~~~Le~~F---~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~~ 97 (205)
.||+|+.|+.+|+.+||.+| ..++||+..++.+||..+||++.+|++||||||+|+|+.....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 36889999999999999999 8999999999999999999999999999999999999976543
No 47
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.78 E-value=2.4e-19 Score=117.93 Aligned_cols=54 Identities=43% Similarity=0.742 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 40 TTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
+.|+.+|+.+||..|..++||+..+|.+||..|||++++|++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999986
No 48
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=6.2e-19 Score=129.11 Aligned_cols=67 Identities=27% Similarity=0.377 Sum_probs=62.2
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhh---------------------CCchhhhhhhhhchHHHH
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKT---------------------KLTEARVQVWFSNRRARL 90 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l---------------------~l~~~qV~~WFqNrR~k~ 90 (205)
.+++||.|+.|++.|+.+||+.|..++||+..+|++||..| +|++.+|+|||||||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 46778899999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHhHHH
Q psy1901 91 RKQLNSQQ 98 (205)
Q Consensus 91 kr~~~~~~ 98 (205)
|++.+...
T Consensus 83 kr~~~~~~ 90 (102)
T 2da6_A 83 AFRQKLAM 90 (102)
T ss_dssp HHHHHHHH
T ss_pred HHhhHhhh
Confidence 99866643
No 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-19 Score=126.55 Aligned_cols=61 Identities=30% Similarity=0.451 Sum_probs=56.9
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHh
Q psy1901 35 QRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLN 95 (205)
Q Consensus 35 ~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~ 95 (205)
..+.|+.|+.+|+.+||.+|..++||+..+|.+||.+|||++++|++||||||+|+|+...
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 3456899999999999999999999999999999999999999999999999999998744
No 50
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.78 E-value=7.8e-20 Score=144.66 Aligned_cols=62 Identities=26% Similarity=0.481 Sum_probs=55.0
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
..++||+|+.|+.+|+.+||..|..++||+..+|.+||..|||++++|+|||||||+|+||.
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 46788899999999999999999999999999999999999999999999999999999985
No 51
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3e-19 Score=124.31 Aligned_cols=59 Identities=25% Similarity=0.429 Sum_probs=55.4
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHh
Q psy1901 37 RSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLN 95 (205)
Q Consensus 37 r~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~ 95 (205)
++|+.|+.+|+.+||..|..|+||+..+|.+||..|||++++|++||||||+|+|++.+
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 45667999999999999999999999999999999999999999999999999999854
No 52
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=4.8e-19 Score=127.11 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhHH
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNSQ 97 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~~ 97 (205)
.|+.+|+.+||+.|..|+||+..+|.+||..|||+++||+|||||||+|+|+++...
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~ 73 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKM 73 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHh
Confidence 789999999999999999999999999999999999999999999999999875543
No 53
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.77 E-value=3.8e-19 Score=123.20 Aligned_cols=61 Identities=28% Similarity=0.407 Sum_probs=57.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHH
Q psy1901 34 KQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 94 (205)
Q Consensus 34 k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~ 94 (205)
..++.|+.|+.+|+.+||..|..++||+..++.+||.+|||++++|++||||||+|+||..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 4467899999999999999999999999999999999999999999999999999999874
No 54
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.77 E-value=3.8e-19 Score=127.09 Aligned_cols=60 Identities=28% Similarity=0.464 Sum_probs=56.8
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQR---TQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~---~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
..+++++|+.|+.+|+.+||.+|.. ++||+..+|.+||..+||+++||++||||||+|+|
T Consensus 24 ~~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 24 KSTKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp EESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 4566778999999999999999999 99999999999999999999999999999999987
No 55
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.76 E-value=6.5e-19 Score=124.91 Aligned_cols=65 Identities=18% Similarity=0.397 Sum_probs=59.2
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhH
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQR---TQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNS 96 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~---~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~ 96 (205)
..++||+|+.|+.+|+.+|+.+|.. ++||+..+|++||.++||+++||++||||+|+|.|+....
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 3566788999999999999999987 5999999999999999999999999999999999887443
No 56
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=1.6e-19 Score=121.68 Aligned_cols=59 Identities=31% Similarity=0.494 Sum_probs=55.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHh---hcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHH
Q psy1901 34 KQRRSRTTFTGDQLEELERAF---QRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92 (205)
Q Consensus 34 k~rr~R~~~s~~q~~~Le~~F---~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 92 (205)
.++++|+.|+.+|+.+||.+| ..++||+..++.+||..|||++.||++||||+|+|+||
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 357889999999999999999 89999999999999999999999999999999999876
No 57
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=8.6e-19 Score=118.48 Aligned_cols=60 Identities=23% Similarity=0.346 Sum_probs=56.4
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQR-TQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~-~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
.+++||.||.|+.+|+.+|+..|.. +.||+.+.|+.||.+|||++++|+|||||||.-.|
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 4677899999999999999999999 99999999999999999999999999999997644
No 58
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.75 E-value=1.1e-18 Score=116.16 Aligned_cols=56 Identities=29% Similarity=0.475 Sum_probs=53.4
Q ss_pred CCCCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 38 SRTTFTGDQLEELERAFQR---TQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 38 ~R~~~s~~q~~~Le~~F~~---~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
+|+.|+.+|+.+||.+|.. ++||+..++.+||.++||++.+|++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4688999999999999999 9999999999999999999999999999999999863
No 59
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.75 E-value=4.5e-19 Score=138.33 Aligned_cols=63 Identities=30% Similarity=0.505 Sum_probs=55.7
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 31 LKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 31 ~~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
..+++||+|+.|+.+|+.+||..|..++||+..+|.+||..|||++++|+|||||||+|+||+
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 356778899999999999999999999999999999999999999999999999999999875
No 60
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.75 E-value=5.5e-19 Score=140.34 Aligned_cols=65 Identities=26% Similarity=0.426 Sum_probs=52.5
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHh
Q psy1901 31 LKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLN 95 (205)
Q Consensus 31 ~~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~ 95 (205)
..+++||+|+.|+..|+.+||..|..++||+..+|.+||..|||++++|+|||||||+|+||..+
T Consensus 95 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 95 AQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp -----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred ccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 35778889999999999999999999999999999999999999999999999999999999754
No 61
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.74 E-value=1.7e-18 Score=122.65 Aligned_cols=61 Identities=25% Similarity=0.393 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhH
Q psy1901 36 RRSRTTFTGDQLEELERAFQR---TQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNS 96 (205)
Q Consensus 36 rr~R~~~s~~q~~~Le~~F~~---~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~ 96 (205)
+++|++|+.+|+.+||.+|.. ++||+..++.+||..+||++.||++||||||+|+|+....
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 445667999999999999999 9999999999999999999999999999999999987544
No 62
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.74 E-value=6.4e-19 Score=128.92 Aligned_cols=66 Identities=30% Similarity=0.431 Sum_probs=54.2
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHh------------------hC---CchhhhhhhhhchHHH
Q psy1901 31 LKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQK------------------TK---LTEARVQVWFSNRRAR 89 (205)
Q Consensus 31 ~~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~------------------l~---l~~~qV~~WFqNrR~k 89 (205)
.++++||.|+.|+.+|+.+||..|..++||+..+|++||.. || |++.+|++||||||++
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 46788899999999999999999999999999999999999 88 9999999999999999
Q ss_pred HHHHHhH
Q psy1901 90 LRKQLNS 96 (205)
Q Consensus 90 ~kr~~~~ 96 (205)
+|++.+.
T Consensus 85 ~k~k~~~ 91 (99)
T 1lfb_A 85 EAFRHKL 91 (99)
T ss_dssp TSCCC--
T ss_pred HHHhchh
Confidence 8887544
No 63
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4e-18 Score=122.38 Aligned_cols=56 Identities=27% Similarity=0.438 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhH
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNS 96 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~ 96 (205)
.++.+|+.+||..|..++||+..+|++||.+|||++++|+|||||||+|+|+.+..
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~ 74 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQA 74 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSC
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHh
Confidence 48999999999999999999999999999999999999999999999999887544
No 64
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=1.1e-18 Score=120.61 Aligned_cols=59 Identities=22% Similarity=0.421 Sum_probs=54.2
Q ss_pred CCCCCCCCCHHHHHHHHHHh-hcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 35 QRRSRTTFTGDQLEELERAF-QRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 35 ~rr~R~~~s~~q~~~Le~~F-~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
..++|.+++.+|+.+||+.| ..++||+..+|.+||.+|||++++|+|||||||+|+|+.
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 34556678888999999999 999999999999999999999999999999999999875
No 65
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.73 E-value=2.8e-18 Score=134.46 Aligned_cols=61 Identities=34% Similarity=0.602 Sum_probs=58.2
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHH
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 92 (205)
.+++||+|+.|+.+|+.+||.+|..++||+..+|.+||.+|||++++|+|||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3577889999999999999999999999999999999999999999999999999999986
No 66
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.73 E-value=3.7e-18 Score=115.31 Aligned_cols=52 Identities=29% Similarity=0.517 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 42 FTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 42 ~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
.+.+|+.+||+.|..++||+..+|.+||..+||++++|++||||||+|+|+.
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 3789999999999999999999999999999999999999999999999986
No 67
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-18 Score=117.79 Aligned_cols=56 Identities=36% Similarity=0.622 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHh
Q psy1901 40 TTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLN 95 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~ 95 (205)
..++..|+..||+.|..++||+..+|.+||.+|||++++|+|||||||+|+||+..
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 35799999999999999999999999999999999999999999999999998743
No 68
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=3.9e-18 Score=115.02 Aligned_cols=50 Identities=26% Similarity=0.403 Sum_probs=46.5
Q ss_pred HHHHHHHHHHh-hcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 44 GDQLEELERAF-QRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 44 ~~q~~~Le~~F-~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
.+|+.+||+.| ..++||+..+|.+||.+|||+++||+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 45899999999 679999999999999999999999999999999999864
No 69
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.70 E-value=8.5e-18 Score=132.29 Aligned_cols=61 Identities=28% Similarity=0.485 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 33 RKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 33 ~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
+++||+|+.|+..|+.+||.+|..++||+..+|.+||.+|||++++|+|||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 5677889999999999999999999999999999999999999999999999999999974
No 70
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.3e-18 Score=113.89 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHH
Q psy1901 40 TTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 92 (205)
..+..+|+.+||..|..++||+..+|.+||.+|||++++|+|||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 34568999999999999999999999999999999999999999999998765
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.68 E-value=1.4e-17 Score=131.92 Aligned_cols=63 Identities=22% Similarity=0.299 Sum_probs=55.0
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHH
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 94 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~ 94 (205)
..++||+|+.|+.+|+.+||.+|..++||+..+|.+||.+|||++++|+|||||||+|.|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 467788999999999999999999999999999999999999999999999999999998864
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=4.7e-17 Score=110.82 Aligned_cols=57 Identities=28% Similarity=0.396 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHhh---cCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhHH
Q psy1901 41 TFTGDQLEELERAFQ---RTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNSQ 97 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~---~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~~ 97 (205)
.|+.+|+.+|+.+|. .++||+..++.+||.++||+++||++||||+|+|.|+....+
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 63 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQ 63 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC---
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHH
Confidence 689999999999999 999999999999999999999999999999999999875443
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.60 E-value=1.8e-16 Score=128.79 Aligned_cols=62 Identities=32% Similarity=0.482 Sum_probs=53.9
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhC---------------------CchhhhhhhhhchHHH
Q psy1901 31 LKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTK---------------------LTEARVQVWFSNRRAR 89 (205)
Q Consensus 31 ~~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~---------------------l~~~qV~~WFqNrR~k 89 (205)
..+++||.|+.|++.|+.+||+.|..++||+..+|++||..|+ |++.+|++||||||++
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 4578889999999999999999999999999999999999999 9999999999999999
Q ss_pred HHH
Q psy1901 90 LRK 92 (205)
Q Consensus 90 ~kr 92 (205)
.|.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 764
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2e-15 Score=102.63 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHH
Q psy1901 44 GDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRAR 89 (205)
Q Consensus 44 ~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k 89 (205)
++|+.+|+.+|..|++|+.+++..||..+||++++|++||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5689999999999999999999999999999999999999999973
No 75
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.56 E-value=7.9e-15 Score=104.79 Aligned_cols=58 Identities=24% Similarity=0.397 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhHH
Q psy1901 40 TTFTGDQLEELERAFQR---TQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNSQ 97 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~~---~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~~ 97 (205)
..|+++++.+|+.+|.. ++||+..+|.+||.++||+++||++||+|+|.|.|+.....
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 45899999999999987 89999999999999999999999999999999999875544
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.54 E-value=4.1e-15 Score=122.45 Aligned_cols=62 Identities=34% Similarity=0.541 Sum_probs=53.7
Q ss_pred CCccCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhC---------------------CchhhhhhhhhchH
Q psy1901 29 IPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTK---------------------LTEARVQVWFSNRR 87 (205)
Q Consensus 29 ~~~~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~---------------------l~~~qV~~WFqNrR 87 (205)
.+.+++.||.|+.|++.|+.+||.+|..++||+..+|++||..|| |++.+|++||||||
T Consensus 136 ~~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR 215 (221)
T 2h8r_A 136 EPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 215 (221)
T ss_dssp ------CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHH
T ss_pred ccccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhh
Confidence 345688899999999999999999999999999999999999998 89999999999999
Q ss_pred HHH
Q psy1901 88 ARL 90 (205)
Q Consensus 88 ~k~ 90 (205)
++.
T Consensus 216 ~~~ 218 (221)
T 2h8r_A 216 KEE 218 (221)
T ss_dssp TTC
T ss_pred hhh
Confidence 763
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.37 E-value=1.5e-13 Score=121.18 Aligned_cols=57 Identities=32% Similarity=0.497 Sum_probs=53.2
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 35 QRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 35 ~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
.++.|+.++.+|+..||+.|..++||+..+|++||.+|||+++||++||||||+|+|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 355678899999999999999999999999999999999999999999999999865
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.75 E-value=1.3e-09 Score=65.04 Aligned_cols=24 Identities=25% Similarity=0.725 Sum_probs=20.4
Q ss_pred hhhhhhhhchHHHHHHHHhHHHhh
Q psy1901 77 ARVQVWFSNRRARLRKQLNSQQLN 100 (205)
Q Consensus 77 ~qV~~WFqNrR~k~kr~~~~~~~~ 100 (205)
+||+|||||||+|+||+.......
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~ 24 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARD 24 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTT
T ss_pred CCceeccHHHHHHHHHHhHHHHHH
Confidence 589999999999999998775444
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.35 E-value=0.0032 Score=42.31 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=36.4
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhh
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFS 84 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFq 84 (205)
..+|+.+|...+.+..+....|+.+.+|+..||+-||-
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 57899999999999999999999999999999999995
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=89.75 E-value=0.48 Score=29.81 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhh
Q psy1901 39 RTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFS 84 (205)
Q Consensus 39 R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFq 84 (205)
|..++.+++..+...+.. .........++|.++||....|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 456899988777555443 333233367999999999999999975
No 81
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=88.73 E-value=0.91 Score=30.87 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=34.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhh
Q psy1901 33 RKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFS 84 (205)
Q Consensus 33 ~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFq 84 (205)
+++|+.+..++.+++...-+.+.. .. -..+||+++|++...|..|..
T Consensus 14 ~~~~~~~~~ys~e~k~~~v~~~~~-g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 14 TKGKRPLRSLTPRDKIHAIQRIHD-GE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SCCSSCCSSCCHHHHHHHHHHHHH-TC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHC-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 334456678899887666566643 22 366889999999999999984
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=88.28 E-value=1.1 Score=32.28 Aligned_cols=49 Identities=14% Similarity=0.225 Sum_probs=38.7
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHH
Q psy1901 38 SRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRAR 89 (205)
Q Consensus 38 ~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k 89 (205)
+|..++.+++..+-..+..+.... ..+||+.+|++...|..|..++...
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 577899999988877776665544 3368999999999999999776654
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=87.63 E-value=1.5 Score=29.88 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHH
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 94 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~ 94 (205)
.++..++.+|.-.|.... ...+||+.||++...|+.+...-|.+.|+..
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 377788888877654332 4678999999999999999887666666653
No 84
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=83.45 E-value=2.4 Score=24.27 Aligned_cols=40 Identities=10% Similarity=0.220 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhc
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSN 85 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqN 85 (205)
.++.++...+...+... + ...+||+.+|++...|..|+..
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 46777775555555433 2 3668999999999999999853
No 85
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=81.98 E-value=1.7 Score=29.08 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 40 TTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
..++..++.+|.-++ .. ....+||+.+|++...|+.+..+-+.|.+..
T Consensus 20 ~~Lt~~e~~vl~l~~--~g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 20 NQLTPRERDILKLIA--QG----LPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp GGSCHHHHHHHHHHT--TT----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHH--cC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 358999999998853 22 2467899999999999999887655555444
No 86
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=81.49 E-value=1.7 Score=27.48 Aligned_cols=48 Identities=17% Similarity=0.075 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
.+++.+..+|.-.|... ....+||..+|++...|+.+...-+.+.++.
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47888999998876443 2357899999999999999887555555443
No 87
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=79.92 E-value=3.5 Score=28.30 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
.++..++.+|.-++.-. ...+||+.||++...|+.+..+-+.|.+..
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 58999999998864332 247899999999999999887655555443
No 88
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=79.19 E-value=1.4 Score=25.81 Aligned_cols=41 Identities=15% Similarity=0.267 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchH
Q psy1901 42 FTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 42 ~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
++.++...+...+... ....+||+.+|++...|..|+....
T Consensus 6 ~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 6 INKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 4455555555555433 2357899999999999999996443
No 89
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=79.10 E-value=3.8 Score=29.72 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHH
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 94 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~ 94 (205)
.+++.++.+|. .|... ....+||+.||++...|+.+...-|.+.|+..
T Consensus 109 ~L~~~~r~v~~-~~~~g-----~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG-----YSYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH-HHTTT-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 46777777777 44322 24678999999999999998876666665543
No 90
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=78.31 E-value=3.3 Score=26.34 Aligned_cols=49 Identities=22% Similarity=0.241 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 39 RTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 39 R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
-..+++.++.+|.-++ ..+ ...+||+.+|++...|+.++.+-+.|.+..
T Consensus 9 ~~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 9 KPLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 3458999999998853 333 457899999999999999887655555443
No 91
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=78.31 E-value=4.2 Score=28.41 Aligned_cols=47 Identities=13% Similarity=0.038 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 39 RTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 39 R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
...+++.++.+|.-++.-. ...+||+.||+++..|+.+..+-+.|..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 4568999999998765322 2488999999999999998875555443
No 92
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=76.84 E-value=2.3 Score=27.60 Aligned_cols=46 Identities=13% Similarity=0.223 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 42 FTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 42 ~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
+++.+..+|.-+| ..+ ...+||+.+|++...|+.++.+-+.|.+..
T Consensus 17 L~~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 17 LSERERQVLSAVV--AGL----PNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HCHHHHHHHHHHT--TTC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 6778888887743 222 346899999999999999887666655543
No 93
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=75.72 E-value=5.8 Score=25.49 Aligned_cols=50 Identities=14% Similarity=0.043 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
.+++.+..+|...|..... ....-.+||..+|++...|+.+...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4789999999998852100 0123468999999999999998876666655
No 94
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=75.45 E-value=5.7 Score=27.10 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=33.7
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHH
Q psy1901 36 RRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRAR 89 (205)
Q Consensus 36 rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k 89 (205)
......|+..++.+|.-++ ..+ ...+||..||++++.|+....+-+.|
T Consensus 24 ~~~~~~Lt~rE~~Vl~l~~--~G~----s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 24 QKEQDVLTPRECLILQEVE--KGF----TNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp -----CCCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3445569999999998876 332 36789999999999999877644443
No 95
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=74.48 E-value=5.1 Score=27.23 Aligned_cols=42 Identities=7% Similarity=0.276 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHhhCCchhhhhhhhh
Q psy1901 39 RTTFTGDQLEELERAFQRT-QYPDVYTREELAQKTKLTEARVQVWFS 84 (205)
Q Consensus 39 R~~~s~~q~~~Le~~F~~~-~~ps~~~r~~LA~~l~l~~~qV~~WFq 84 (205)
|..++.+++...-..+... . ....+||..+|++...|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g----~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG----ASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG----SCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC----ChHHHHHHHHCcCHHHHHHHHH
Confidence 3568888887666666432 2 2367899999999999999984
No 96
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=74.27 E-value=4.3 Score=27.28 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHhhc-----CCCCCHHHHHHHHHhhCCchhhhhhhhh
Q psy1901 40 TTFTGDQLEELERAFQR-----TQYPDVYTREELAQKTKLTEARVQVWFS 84 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~~-----~~~ps~~~r~~LA~~l~l~~~qV~~WFq 84 (205)
+.++.+++..|++.|.. +.+.+..+...+...+|++...++..|.
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 35788999999999954 4678999999888889999888877664
No 97
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=73.75 E-value=5 Score=25.42 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHH
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 92 (205)
.+++.+..+|.-.|..+.+- ...-.+||+.+|++...|+.+...-+.|.|+
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47889999999988432111 1235789999999999999987644444443
No 98
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=71.52 E-value=1.5 Score=33.50 Aligned_cols=45 Identities=9% Similarity=0.186 Sum_probs=34.3
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 92 (205)
+....+.|....|-.. ...+||+..|+++..|-..|.||..=...
T Consensus 34 l~aa~~lf~~~G~~~~-tv~~IA~~agvs~~t~Y~~F~sK~~Ll~~ 78 (215)
T 2qko_A 34 VNAAIEVLAREGARGL-TFRAVDVEANVPKGTASNYFPSRDDLFDQ 78 (215)
T ss_dssp HHHHHHHHHHTCTTTC-CHHHHHHHSSSTTTCHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHhChhhc-cHHHHHHHcCCCcchHHHhCCCHHHHHHH
Confidence 4455667888887544 36788999999999999999987654443
No 99
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=71.50 E-value=1.7 Score=32.85 Aligned_cols=43 Identities=12% Similarity=0.318 Sum_probs=33.2
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRAR 89 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k 89 (205)
-+....+.|....|-.. ...+||+..|++..-|-.+|.||-.=
T Consensus 36 Il~aa~~l~~~~G~~~~-tv~~Ia~~agvs~~t~Y~~F~sK~~L 78 (218)
T 3dcf_A 36 IIKVATELFREKGYYAT-SLDDIADRIGFTKPAIYYYFKSKEDV 78 (218)
T ss_dssp HHHHHHHHHHHTCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHcCcccC-cHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 34456666888887543 36788999999999999999998753
No 100
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=71.39 E-value=9.3 Score=27.24 Aligned_cols=48 Identities=15% Similarity=0.134 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
.+++.+..+|.-.|.... ...++|..+|++...|+.|...-|.+.++.
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 478888888887764432 357899999999999999998777776654
No 101
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=70.47 E-value=5.8 Score=26.56 Aligned_cols=52 Identities=19% Similarity=0.136 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
.+++.+..+|...|..... ....-.+||..+|++...|+.+...-+.+.|+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~ 69 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRHP 69 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTT
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4788899999888852100 112357889999999999999887666555543
No 102
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=70.30 E-value=3.1 Score=28.18 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 40 TTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
..+++.++.+|.-++. .+ ...+||+.||++...|+.+..+-+.|.+..
T Consensus 28 ~~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp GGCCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred hcCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 3488899999987542 32 245799999999999999887655555443
No 103
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=70.21 E-value=7.1 Score=26.89 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHHHhh-----cCCCCCHHHHHHHHHhhC--Cchhhhhhhhh
Q psy1901 38 SRTTFTGDQLEELERAFQ-----RTQYPDVYTREELAQKTK--LTEARVQVWFS 84 (205)
Q Consensus 38 ~R~~~s~~q~~~Le~~F~-----~~~~ps~~~r~~LA~~l~--l~~~qV~~WFq 84 (205)
+...++.+++..|.+.|. .+.+.+..+...+.+.+| +++.+|+.+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 445689999999999984 457999999999988887 67777777764
No 104
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=69.08 E-value=12 Score=26.53 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHH
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 94 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~ 94 (205)
.+++.++.+|.-.|.... ...++|+.+|++...|+.+...-|.+.|+..
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 367788888877754432 3578999999999999999987777776643
No 105
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=68.99 E-value=7.9 Score=28.64 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=38.2
Q ss_pred CCCCCCCCHHHHHHHHHHh-hcCCCCCHHHHHHHHH-hh--CCchhhhhhhhhc
Q psy1901 36 RRSRTTFTGDQLEELERAF-QRTQYPDVYTREELAQ-KT--KLTEARVQVWFSN 85 (205)
Q Consensus 36 rr~R~~~s~~q~~~Le~~F-~~~~~ps~~~r~~LA~-~l--~l~~~qV~~WFqN 85 (205)
+++|.++|-+|...|-+++ ..++..+..+....|. +. ++....|.-|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 5788999999999999999 6777776654444322 56 7888899988865
No 106
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=68.04 E-value=6.4 Score=26.59 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHhh-----cCCCCCHHHHHHHHHhhCCchhhhhhhhh
Q psy1901 41 TFTGDQLEELERAFQ-----RTQYPDVYTREELAQKTKLTEARVQVWFS 84 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~-----~~~~ps~~~r~~LA~~l~l~~~qV~~WFq 84 (205)
.++.+++..|++.|. .+.+.+..+...+...+|++...|+.+|.
T Consensus 3 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 467888999999984 35689999999998999999988877774
No 107
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=67.76 E-value=2.6 Score=31.52 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 45 DQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 45 ~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
.-+..-.+.|....| . -...+||+..|+++..|-..|.||-.=.
T Consensus 19 ~Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L~ 62 (194)
T 2q24_A 19 KILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREALI 62 (194)
T ss_dssp HHHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHHH
Confidence 345566677888888 5 6899999999999999999999886433
No 108
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=67.24 E-value=9.5 Score=29.47 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
.+++.+..+|.-.|... ....+||+.||++...|+.+...-|.+.|+.
T Consensus 187 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 47788888888776433 2467899999999999999987666666654
No 109
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=67.19 E-value=9.6 Score=28.57 Aligned_cols=47 Identities=13% Similarity=0.066 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 42 FTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 42 ~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
+++.+..+|.-.|... ..-.+||+.+|++...|+.+...-|.+.|+.
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 5667777776655332 2357899999999999999988666666654
No 110
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=64.28 E-value=9.6 Score=26.29 Aligned_cols=46 Identities=24% Similarity=0.316 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHHHhhcCC--CCCH-HHHHHHHHhhCCchhhhhhhhh
Q psy1901 39 RTTFTGDQLEELERAFQRTQ--YPDV-YTREELAQKTKLTEARVQVWFS 84 (205)
Q Consensus 39 R~~~s~~q~~~Le~~F~~~~--~ps~-~~r~~LA~~l~l~~~qV~~WFq 84 (205)
+..|+.+++...-..+.... +.+. ....++|..+|++...|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 34688888865555543321 3332 4577899999999999999974
No 111
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=62.07 E-value=6.1 Score=26.19 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHhh-----cCCCCCHHHHHHHHHhhCCchhhhhhhhh
Q psy1901 39 RTTFTGDQLEELERAFQ-----RTQYPDVYTREELAQKTKLTEARVQVWFS 84 (205)
Q Consensus 39 R~~~s~~q~~~Le~~F~-----~~~~ps~~~r~~LA~~l~l~~~qV~~WFq 84 (205)
-..++.+++..|...|. .+.+.+..+...+...+|++..+|+.+|.
T Consensus 18 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 18 GADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 34578889999999984 35689999999999999999888888774
No 112
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=61.31 E-value=9.7 Score=23.17 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=29.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
|+.+|.-++. .+ ...++|+.+|+++..|+.+..+-+.|.+..
T Consensus 3 e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 3 ERQVLKLIDE--GY----TNHGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp HHHHHHHHHT--SC----CSHHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHc--CC----CHHHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 5566655432 22 236899999999999999887666655544
No 113
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=60.24 E-value=11 Score=22.43 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhh
Q psy1901 44 GDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFS 84 (205)
Q Consensus 44 ~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFq 84 (205)
.++...+...+.. .+ ...+||+.+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~~-g~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKM-GY----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHT-TC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 5566555555543 32 366899999999999999975
No 114
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=59.71 E-value=25 Score=24.46 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHh
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLN 95 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~ 95 (205)
.+++.+..++.-.|..+.+ ....-.+||..+|++...|+.....-+.+.|+...
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~ 72 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 72 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888754311 12346789999999999999988766666666543
No 115
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=59.41 E-value=8.2 Score=30.66 Aligned_cols=53 Identities=15% Similarity=0.183 Sum_probs=36.1
Q ss_pred CCCCCCCHHH-HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 37 RSRTTFTGDQ-LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 37 r~R~~~s~~q-~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
.+|...++++ +..-.+.|....|-... ..+||+.+|++..-|-..|.||-.=.
T Consensus 24 ~~~~~~tr~~Il~aA~~l~~~~G~~~~s-~~~IA~~aGvs~~tlY~hF~~K~~Ll 77 (241)
T 2hxi_A 24 AGRRRWSTEQILDAAAELLLAGDAETFS-VRKLAASLGTDSSSLYRHFRNKTELL 77 (241)
T ss_dssp ----CCCHHHHHHHHHHHHSSSSCCCCC-HHHHHHHTTSCHHHHHHHTSSHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHhcCcccCC-HHHHHHHhCcCHHHHHHHcCCHHHHH
Confidence 3444566655 34556667777765444 66789999999999999999976543
No 116
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=59.36 E-value=0.13 Score=39.72 Aligned_cols=30 Identities=10% Similarity=0.013 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCH
Q psy1901 33 RKQRRSRTTFTGDQLEELERAFQRTQYPDV 62 (205)
Q Consensus 33 ~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~ 62 (205)
.+.||.|+.|+..|+.+|+..|+.++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 566788999999999999999999999874
No 117
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=58.46 E-value=43 Score=24.49 Aligned_cols=51 Identities=6% Similarity=-0.121 Sum_probs=39.0
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNSQ 97 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~~ 97 (205)
....+.+|......+......+|+++||....+.-++.+...+..-.....
T Consensus 85 ~~~~~~lf~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~ 135 (175)
T 3gyk_A 85 EAFHWALMGMSGKANETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMA 135 (175)
T ss_dssp HHHHHHHHTCSSCCSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHH
Confidence 345566787777789999999999999999999999877766554443333
No 118
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=58.22 E-value=3.7 Score=31.93 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=36.2
Q ss_pred CCCCCCCCHHH-HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHH
Q psy1901 36 RRSRTTFTGDQ-LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92 (205)
Q Consensus 36 rr~R~~~s~~q-~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 92 (205)
++.|...++++ +....+.|....|-.. ...+||+.+|++..-|...|.||..=...
T Consensus 19 ~~~r~~~tr~~Il~aA~~l~~~~G~~~~-s~~~IA~~aGvs~~tlY~~F~~K~~L~~a 75 (211)
T 3fiw_A 19 FQGMTKMNRETVITEALDLLDEVGLDGV-STRRLAKRLGVEQPSLYWYFRTKRDLLTA 75 (211)
T ss_dssp -----CCCHHHHHHHHHHHHHHHCGGGC-CHHHHHHHHTSCTHHHHTTCSSHHHHHHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCcccC-CHHHHHHHhCCChhHHHHHcCCHHHHHHH
Confidence 34444555554 4455666777776433 36788999999999999999987655433
No 119
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=56.11 E-value=12 Score=30.10 Aligned_cols=48 Identities=15% Similarity=0.079 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 40 TTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
..+++.++.+|.-.+ ..+ .-.+||+.||+++..|+....+-|.|.|..
T Consensus 196 ~~L~~~erevl~L~~--~G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 196 NILSEREKEILRCIR--KGL----SSKEIAATLYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp TSSCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 468999999998864 232 367899999999999999887666666554
No 120
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=55.86 E-value=20 Score=26.18 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=31.7
Q ss_pred CCCCCCHHHHHHHHHHhh-----cCCCCCHHHHHHHHHhhCCch
Q psy1901 38 SRTTFTGDQLEELERAFQ-----RTQYPDVYTREELAQKTKLTE 76 (205)
Q Consensus 38 ~R~~~s~~q~~~Le~~F~-----~~~~ps~~~r~~LA~~l~l~~ 76 (205)
+|..++.+|+..|.+.|. .+.+.+..+...+.+.||+..
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 49 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP 49 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCc
Confidence 456799999999999995 356899999999888888544
No 121
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=55.40 E-value=4.4 Score=29.90 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=31.5
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
+..-.+.|... ..-...+||+..|+++.-|-..|.||-.=.
T Consensus 20 l~aA~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 60 (190)
T 2v57_A 20 LDAAMLVLADH---PTAALGDIAAAAGVGRSTVHRYYPERTDLL 60 (190)
T ss_dssp HHHHHHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 33445556665 666788999999999999999999986543
No 122
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=54.86 E-value=17 Score=28.76 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 40 TTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
..+++.++.+|.-.+. .+ .-++||+.||++++.|+....|-+.|..-.
T Consensus 174 ~~Lt~~e~~vl~~~~~--g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 221 (236)
T 2q0o_A 174 QMLSPREMLCLVWASK--GK----TASVTANLTGINARTVQHYLDKARAKLDAE 221 (236)
T ss_dssp GSCCHHHHHHHHHHHT--TC----CHHHHHHHHCCCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 4588999998866542 22 357899999999999999887666555433
No 123
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=54.80 E-value=42 Score=22.03 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=33.7
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhh-CCchhhhhhhh
Q psy1901 36 RRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKT-KLTEARVQVWF 83 (205)
Q Consensus 36 rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l-~l~~~qV~~WF 83 (205)
+..+..+|.++-..|+.....-+.-+...=..||..+ |=+..+|+.=|
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry 63 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 63 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHH
Confidence 4455679999999999988765543444456688888 57777766544
No 124
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=54.42 E-value=19 Score=25.41 Aligned_cols=41 Identities=10% Similarity=0.229 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhc
Q psy1901 40 TTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSN 85 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqN 85 (205)
..++.+++..+...+.. .+ ...+||+.+|++...|..|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~-G~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHc
Confidence 45788888777777753 32 3578899999999999999964
No 125
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=54.25 E-value=7.9 Score=25.52 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=23.5
Q ss_pred HHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
..+||+.||++..-|..|+.++..-.++.
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~iP~~~~ 41 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGEIPPLRQ 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCCCHHHH
Confidence 78999999999999999997655554443
No 126
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=52.80 E-value=24 Score=22.85 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=39.5
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCC--CCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHH
Q psy1901 36 RRSRTTFTGDQLEELERAFQRTQ--YPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92 (205)
Q Consensus 36 rr~R~~~s~~q~~~Le~~F~~~~--~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 92 (205)
++.|.+++++.-..+.+...+-. .-++..+.++-..-||+..+|+.=.|.-|.+.||
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 56778888876555544443332 3345666666666689999999999988887765
No 127
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=51.76 E-value=31 Score=21.89 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHhh-----cCCCCCHHHHHHHHHhhC--Cchhh---hhhhh
Q psy1901 40 TTFTGDQLEELERAFQ-----RTQYPDVYTREELAQKTK--LTEAR---VQVWF 83 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~-----~~~~ps~~~r~~LA~~l~--l~~~q---V~~WF 83 (205)
..++.+++..|.+.|. .+.+.+..+...+...+| ++..+ |..+|
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 59 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEA 59 (86)
T ss_dssp CCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4577888888999884 356899999999888887 44555 55555
No 128
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=51.50 E-value=7.2 Score=23.72 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=20.3
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998764
No 129
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=51.32 E-value=28 Score=27.35 Aligned_cols=47 Identities=17% Similarity=0.093 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 39 RTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 39 R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
...+++.++.+|.-.+ .. ..-++||+.||+++..|+....|-+.|..
T Consensus 171 ~~~Lt~~e~~vl~~~~--~g----~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIA--VG----KTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHHHT--TT----CCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHH--cC----CCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 3468999999986653 22 23578999999999999998876555543
No 130
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=51.15 E-value=3.2 Score=32.21 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=31.6
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRAR 89 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k 89 (205)
+....+.|....|-... ..+||++.|++...|-..|.||-.=
T Consensus 49 l~aA~~l~~~~G~~~~t-v~~IA~~AGvs~~t~Y~~F~sKe~L 90 (229)
T 3bni_A 49 LDACADLLDEVGYDALS-TRAVALRADVPIGSVYRFFGNKRQM 90 (229)
T ss_dssp HHHHHHHHHHHCTTTCC-HHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHhcChhhcc-HHHHHHHHCCCchhHHHHcCCHHHH
Confidence 33444557777765443 6788999999999999999997643
No 131
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=51.14 E-value=11 Score=25.09 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=24.2
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNSQ 97 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~~ 97 (205)
+.+..-+|+.|+||+.+-... | =.|||.+|+.+..+.
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQI 54 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHHH
Confidence 345566789999998753222 1 138888888876554
No 132
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=50.80 E-value=7.1 Score=25.27 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.8
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 57899999999999999998766
No 133
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=50.77 E-value=7.7 Score=23.74 Aligned_cols=24 Identities=8% Similarity=0.303 Sum_probs=20.8
Q ss_pred HHHHHHhhCCchhhhhhhhhchHH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRRA 88 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR~ 88 (205)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 568999999999999999987653
No 134
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=50.34 E-value=6.1 Score=27.85 Aligned_cols=48 Identities=15% Similarity=0.166 Sum_probs=37.0
Q ss_pred CCCCCCCHHHHHHHHHHhhc-----CCCCCHHHHHHHHHhhCCchhhhhhhhh
Q psy1901 37 RSRTTFTGDQLEELERAFQR-----TQYPDVYTREELAQKTKLTEARVQVWFS 84 (205)
Q Consensus 37 r~R~~~s~~q~~~Le~~F~~-----~~~ps~~~r~~LA~~l~l~~~qV~~WFq 84 (205)
.....++.+++..|++.|.. +.+.+..+...+...+|++..+|..+|.
T Consensus 11 ~~~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~~ 63 (110)
T 1iq3_A 11 DEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWE 63 (110)
T ss_dssp CSSCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34456788888888888843 4678888888888888998888877764
No 135
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=50.24 E-value=6.5 Score=30.84 Aligned_cols=42 Identities=17% Similarity=0.373 Sum_probs=31.7
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRAR 89 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k 89 (205)
+....+.|....|-.. ...+||+..|+++..|-..|.||..=
T Consensus 49 l~AA~~lf~~~G~~~~-t~~~IA~~aGvs~~tlY~~F~sK~~L 90 (255)
T 3g1o_A 49 LATAENLLEDRPLADI-SVDDLAKGAGISRPTFYFYFPSKEAV 90 (255)
T ss_dssp HHHHHHHHTTSCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCCccC-cHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 4455566777776433 36678999999999999999988644
No 136
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=49.82 E-value=7.4 Score=29.05 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=24.9
Q ss_pred HHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHH
Q psy1901 52 RAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRA 88 (205)
Q Consensus 52 ~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~ 88 (205)
.+|....|-.. ...+||++.|++..-|-..|.||-.
T Consensus 36 ~lf~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~sK~~ 71 (212)
T 3nxc_A 36 MLESSDGSQRI-TTAKLAASVGVSEAALYRHFPSKTR 71 (212)
T ss_dssp HHHC------C-CHHHHHHHTTSCHHHHHTTCSSHHH
T ss_pred HHHhcCChhhc-CHHHHHHHhCCChhHHHHHCCCHHH
Confidence 35666665444 3678899999999999999999875
No 137
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=49.73 E-value=12 Score=29.72 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=37.0
Q ss_pred CCCCCCCCCHHH-HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 35 QRRSRTTFTGDQ-LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 35 ~rr~R~~~s~~q-~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
+|..|...++++ +..-.+.|....|-.. ...+||+++|++..-|-..|.||-.=..
T Consensus 12 ~r~~r~~~tr~~Il~AA~~l~~e~G~~~~-S~~~IA~~aGvs~~tlY~hF~sK~~Ll~ 68 (243)
T 2g7l_A 12 DRPAKPALSRRWIVDTAVALMRAEGLEKV-TMRRLAQELDTGPASLYVYVANTAELHA 68 (243)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHHCSSSC-CHHHHHHHTTSCHHHHTTTCCSHHHHHH
T ss_pred CCCCCcccCHHHHHHHHHHHHHhcCchhc-CHHHHHHHHCCChhHHHHHcCCHHHHHH
Confidence 333444566654 4455666777776444 3678899999999999999998765433
No 138
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=49.72 E-value=34 Score=23.75 Aligned_cols=45 Identities=7% Similarity=0.045 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHhhc----CCCCCHHHHHHHHHhhCCchhhhhhhh
Q psy1901 39 RTTFTGDQLEELERAFQR----TQYPDVYTREELAQKTKLTEARVQVWF 83 (205)
Q Consensus 39 R~~~s~~q~~~Le~~F~~----~~~ps~~~r~~LA~~l~l~~~qV~~WF 83 (205)
...++.+++..+++.|.. +.+.+..+...+-..+|++..+|...|
T Consensus 6 ~w~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~~el~~i~ 54 (106)
T 1eh2_A 6 PWAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVW 54 (106)
T ss_dssp CCSSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCHHHHHHHH
Confidence 356889999999999954 568899999999899999988877766
No 139
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=49.47 E-value=11 Score=28.14 Aligned_cols=43 Identities=19% Similarity=0.385 Sum_probs=34.1
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRAR 89 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k 89 (205)
-+....+.|.+..|-... ..+||+..|+++.-|-..|.||-.=
T Consensus 19 Il~aA~~lf~~~G~~~~s-~~~Ia~~agvs~~t~Y~yF~sKe~L 61 (203)
T 3ccy_A 19 IIERAAAMFARQGYSETS-IGDIARACECSKSRLYHYFDSKEAV 61 (203)
T ss_dssp HHHHHHHHHHHTCTTTSC-HHHHHHHTTCCGGGGTTTCSCHHHH
T ss_pred HHHHHHHHHHHcCcccCC-HHHHHHHhCCCcCeeeeeeCCHHHH
Confidence 345566778888876554 6788999999999999999988643
No 140
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=48.62 E-value=33 Score=25.12 Aligned_cols=46 Identities=7% Similarity=-0.046 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHh-------hCCchhhhhhhhh
Q psy1901 39 RTTFTGDQLEELERAFQRTQYPDVYTREELAQK-------TKLTEARVQVWFS 84 (205)
Q Consensus 39 R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~-------l~l~~~qV~~WFq 84 (205)
+..++.++...|.+++..++..+..++.+.... ..++...|..|+.
T Consensus 81 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~ 133 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIR 133 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHH
Confidence 345677778888888877776676655443322 2477888888874
No 141
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=48.41 E-value=38 Score=23.11 Aligned_cols=45 Identities=7% Similarity=-0.046 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCC-------chhhhhhhhh
Q psy1901 40 TTFTGDQLEELERAFQRTQYPDVYTREELAQKTKL-------TEARVQVWFS 84 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l-------~~~qV~~WFq 84 (205)
..++.++...|.++...++..+..++.....+.|+ +...|..|+.
T Consensus 74 ~~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~ 125 (128)
T 1pdn_C 74 RIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVR 125 (128)
T ss_dssp CSSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHH
Confidence 35677778888888777777676554443333264 7888888875
No 142
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=48.10 E-value=8.5 Score=23.81 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.0
Q ss_pred HHHHHHhhCCchhhhhhhhhchHH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRRA 88 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR~ 88 (205)
..+||+.+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 478999999999999999987654
No 143
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=48.05 E-value=20 Score=22.85 Aligned_cols=41 Identities=7% Similarity=0.032 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchH
Q psy1901 40 TTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..++.+.+..+.+..... ..+||+.+|++...|..|-.+++
T Consensus 9 ~~~~g~~lr~~R~~~glt-------q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCCC-------HHHHHHHhCcCHHHHHHHHcCCC
Confidence 468888888887765332 47899999999999999998765
No 144
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=48.02 E-value=6.9 Score=28.94 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHH
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 92 (205)
.+++.++.+|.-.|. ......+||+.||+++..|+.....-|.+.|+
T Consensus 93 ~Lp~~~r~vl~L~~~-----~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~ 139 (157)
T 2lfw_A 93 RMTPLSRQALLLTAM-----EGFSPEDAAYLIEVDTSEVETLVTEALAEIEK 139 (157)
T ss_dssp TSCTTHHHHHTTTSS-----SCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 477878877755432 22346889999999999999988755555544
No 145
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=47.65 E-value=6.2 Score=29.44 Aligned_cols=46 Identities=30% Similarity=0.314 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHH
Q psy1901 42 FTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92 (205)
Q Consensus 42 ~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 92 (205)
+++.+..+|.-.|.... ...+||+.||++...|+.+...-|.+.|+
T Consensus 136 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 136 LPEAQRALIERAFFGDL-----THRELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp SCHHHHHHHHHHHHSCC-----SSCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 44555555544432221 12468889999999999998766666654
No 146
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=47.56 E-value=30 Score=21.79 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHhhc-----CCCCCHHHHHHHHHhhC--Cchhhhhhhhh
Q psy1901 40 TTFTGDQLEELERAFQR-----TQYPDVYTREELAQKTK--LTEARVQVWFS 84 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~~-----~~~ps~~~r~~LA~~l~--l~~~qV~~WFq 84 (205)
..++.+++..|++.|.. +.+.+..+...+...+| ++...|...|.
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 6 KVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp CSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45789999999999953 45788888888888887 56666666663
No 147
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=47.48 E-value=11 Score=27.98 Aligned_cols=41 Identities=10% Similarity=0.196 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
-+....+.|....|-.. ...+||+..|++...|-..|.||-
T Consensus 22 Il~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~ 62 (207)
T 2rae_A 22 ISTVGIELFTEQGFDAT-SVDEVAEASGIARRTLFRYFPSKN 62 (207)
T ss_dssp HHHHHHHHHHHHCTTTS-CHHHHHHHTTSCHHHHHHHCSSTT
T ss_pred HHHHHHHHHHHcCcccC-CHHHHHHHhCCCcchHhhhCCCHH
Confidence 34555666888777544 367889999999999999999875
No 148
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=47.16 E-value=11 Score=27.93 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
-+....+.|....|-... ..+||+..|++...|-..|.||..=..
T Consensus 21 Il~aa~~lf~~~G~~~~t-~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 65 (213)
T 2qtq_A 21 LLQTASNIMREGDVVDIS-LSELSLRSGLNSALVKYYFGNKAGLLK 65 (213)
T ss_dssp HHHHHHHHHHHHTSSCCC-HHHHHHHHCCCHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHHHcCccccc-HHHHHHHhCCChhhHhHhcCCHHHHHH
Confidence 345566678887765444 677899999999999999999865443
No 149
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=46.48 E-value=9.5 Score=23.98 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.5
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999998765
No 150
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=46.43 E-value=7.8 Score=28.44 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHH
Q psy1901 45 DQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRA 88 (205)
Q Consensus 45 ~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~ 88 (205)
.-+....+.|....|-... ..+||+..|++..-|-..|.||-.
T Consensus 14 ~Il~aa~~lf~~~G~~~~t-~~~IA~~agvs~~tlY~~F~sK~~ 56 (197)
T 3rd3_A 14 HLLDTGYRIMAVKGFSGVG-LNEILQSAGVPKGSFYHYFKSKEQ 56 (197)
T ss_dssp HHHHHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHTTTCSCHHH
T ss_pred HHHHHHHHHHHHCCcccCC-HHHHHHHhCCChhhHHHHcCCHHH
Confidence 3355566678887765443 667899999999999999999876
No 151
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=46.36 E-value=60 Score=23.24 Aligned_cols=49 Identities=4% Similarity=-0.008 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHH-Hhh----C--CchhhhhhhhhchH
Q psy1901 39 RTTFTGDQLEELERAFQRTQYPDVYTREELA-QKT----K--LTEARVQVWFSNRR 87 (205)
Q Consensus 39 R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA-~~l----~--l~~~qV~~WFqNrR 87 (205)
+..++.++...+.++...++..+..++.... ... | ++...|..|+....
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~ 143 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKV 143 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC-
T ss_pred CCCCCHHHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHh
Confidence 3457888888888888887766665443322 221 4 78888998886443
No 152
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=45.60 E-value=10 Score=23.79 Aligned_cols=24 Identities=8% Similarity=0.303 Sum_probs=20.9
Q ss_pred HHHHHHhhCCchhhhhhhhhchHH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRRA 88 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR~ 88 (205)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 568999999999999999987653
No 153
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=45.55 E-value=10 Score=23.88 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.3
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999998764
No 154
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=45.32 E-value=8.1 Score=29.23 Aligned_cols=42 Identities=5% Similarity=0.148 Sum_probs=32.7
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
+....+.|.... ..-...+||+..|+++..|...|.||..=.
T Consensus 26 l~aA~~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~ 67 (215)
T 2hku_A 26 FTAATELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSKERLF 67 (215)
T ss_dssp HHHHHHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 344455577766 666688999999999999999999887543
No 155
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=45.20 E-value=54 Score=21.42 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhh
Q psy1901 39 RTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQV 81 (205)
Q Consensus 39 R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~ 81 (205)
+..+|.++...|++....-+--+...=+.||..+|=+..+|+.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~ 50 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTT 50 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHH
Confidence 3469999999999998765532333234578888877777765
No 156
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=45.03 E-value=50 Score=26.69 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 40 TTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
..+++.++.+|.-... . ...++||+.||++++.|+....|-+.|..-.
T Consensus 196 ~~Lt~re~~vl~~~~~--G----~s~~eIA~~l~is~~TV~~~~~~~~~kl~~~ 243 (265)
T 3qp6_A 196 MPLSQREYDIFHWMSR--G----KTNWEIATILNISERTVKFHVANVIRKLNAN 243 (265)
T ss_dssp CCCCHHHHHHHHHHHT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 4688999999877742 2 2367899999999999999887666665443
No 157
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=44.97 E-value=4.2 Score=30.23 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=31.5
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
+..-.+.|....|-.. ...+||+..|+++.-|-..|.||-.=..
T Consensus 23 l~aa~~lf~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~L~~ 66 (208)
T 3cwr_A 23 VGAAQRLLSSGGAAAM-TMEGVASEAGIAKKTLYRFASGRADLIG 66 (208)
T ss_dssp HHHHHHHHHHHCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcCHHhc-cHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 3344455777665433 3678899999999999999998765443
No 158
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=44.82 E-value=13 Score=27.79 Aligned_cols=43 Identities=14% Similarity=0.259 Sum_probs=33.1
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
+....+.|....|-... ..+||+..|+++..|-..|.||-.=.
T Consensus 23 l~aA~~l~~~~G~~~~t-~~~IA~~agvs~~t~Y~~F~sK~~L~ 65 (218)
T 3gzi_A 23 ILAARNLFIERPYAQVS-IREIASLAGTDPGLIRYYFGSKEKLF 65 (218)
T ss_dssp HHHHHHHHHTSCCSCCC-HHHHHHHHTSCTHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHCCCCcCC-HHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 34455668888876543 66789999999999999999987543
No 159
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=44.72 E-value=6.5 Score=30.45 Aligned_cols=44 Identities=18% Similarity=0.370 Sum_probs=32.5
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
+....+.|....|-.. ...+||+..|++..-|...|.||..=..
T Consensus 50 l~aA~~lf~e~G~~~~-t~~~IA~~aGvs~~tlY~~F~sK~~L~~ 93 (236)
T 3q0w_A 50 LATAENLLEDRPLADI-SVDDLAKGAGISRPTFYFYFPSKEAVLL 93 (236)
T ss_dssp HHHHHHHHHHSCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHhCCcHHHHHHHCCCHHHHHH
Confidence 3445556778776433 3668899999999999999998875443
No 160
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=44.46 E-value=18 Score=26.86 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=33.4
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRA 88 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~ 88 (205)
+..-.+.|.+..| . -...+||+..|+++.-|-..|.||-.
T Consensus 19 l~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~~ 58 (196)
T 2qwt_A 19 LEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQA 58 (196)
T ss_dssp HHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 4455666888898 6 57899999999999999999999864
No 161
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=44.18 E-value=16 Score=28.01 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=34.6
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
-+....+.|....|-... ..+||+..|++...|-..|.||-.=..
T Consensus 35 Il~aA~~lf~~~G~~~~t-~~~IA~~Agvs~~t~Y~~F~sKe~Ll~ 79 (230)
T 2iai_A 35 LLSVAVQVFIERGYDGTS-MEHLSKAAGISKSSIYHHVTGKEELLR 79 (230)
T ss_dssp HHHHHHHHHHHHCTTTCC-HHHHHHHHTSCHHHHTTTCSSHHHHHH
T ss_pred HHHHHHHHHHHcCccccC-HHHHHHHHCCChhHHHHhCCCHHHHHH
Confidence 456667778887775443 678899999999999999998865433
No 162
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=43.89 E-value=9.8 Score=28.48 Aligned_cols=44 Identities=11% Similarity=0.254 Sum_probs=33.5
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
-+....+.|....|-... ..+||+..|++..-|-..|.||..=.
T Consensus 16 Il~aA~~lf~~~G~~~~t-i~~Ia~~agvs~~t~Y~~F~sK~~L~ 59 (216)
T 3f0c_A 16 IINAAQKRFAHYGLCKTT-MNEIASDVGMGKASLYYYFPDKETLF 59 (216)
T ss_dssp HHHHHHHHHHHHCSSSCC-HHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHHcCCCcCC-HHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 345556668888875443 67889999999999999999986543
No 163
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=43.89 E-value=16 Score=27.35 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 44 GDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 44 ~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
..-+..-.+.|.+..|-... ..+||+..|+++.-|-..|.||..=..
T Consensus 14 ~~Il~aA~~lF~~~Gy~~ts-~~~IA~~aGvsk~tlY~~F~sKe~L~~ 60 (202)
T 2i10_A 14 QVALQTAMELFWRQGYEGTS-ITDLTKALGINPPSLYAAFGSKRDLFE 60 (202)
T ss_dssp HHHHHHHHHHHHHHTTTTCC-HHHHHHHHTCCHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCC-HHHHHHHhCCChHHHHHHhCCHHHHHH
Confidence 34455556778888876544 678899999999999999998765443
No 164
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=43.88 E-value=26 Score=22.27 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHhh-----cCCCCCHHHHHHHHHhhC-Cchhhhhhhhh
Q psy1901 41 TFTGDQLEELERAFQ-----RTQYPDVYTREELAQKTK-LTEARVQVWFS 84 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~-----~~~~ps~~~r~~LA~~l~-l~~~qV~~WFq 84 (205)
.+++++...|...|. .+.+.+..+...+...+| ++...|..+|.
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 468888999999884 346788888888888776 66667766663
No 165
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Probab=43.77 E-value=85 Score=23.76 Aligned_cols=41 Identities=0% Similarity=-0.117 Sum_probs=30.7
Q ss_pred hhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHH
Q psy1901 54 FQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 94 (205)
Q Consensus 54 F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~ 94 (205)
|......+......+|.++||...++.-.+.+...+.+-+.
T Consensus 99 ~~~~~~~~~~~L~~~a~~~Gld~~~~~~~~~s~~~~~~v~~ 139 (191)
T 3l9s_A 99 QKTQTVQSAADIRKVFVDAGVKGEDYDAAWNSFVVKSLVAQ 139 (191)
T ss_dssp HTSCCCSSHHHHHHHHHHTTCCHHHHHHHHTSHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHH
Confidence 44444567888999999999999999988877665544433
No 166
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=43.72 E-value=32 Score=22.11 Aligned_cols=24 Identities=8% Similarity=0.026 Sum_probs=20.8
Q ss_pred HHHHHHHhhCCchhhhhhhhhchH
Q psy1901 64 TREELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 64 ~r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
...+||+.+|++...|..|..+++
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 345999999999999999998765
No 167
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=43.65 E-value=11 Score=23.07 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.9
Q ss_pred HHHHHHhhCCchhhhhhhhhchHH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRRA 88 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR~ 88 (205)
..+||+.+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 568999999999999999987654
No 168
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=43.62 E-value=6.5 Score=29.29 Aligned_cols=44 Identities=18% Similarity=0.394 Sum_probs=33.4
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
+....+.|....|-... ..+||+..|+++.-|-.+|.||-.=..
T Consensus 18 l~aA~~lf~e~G~~~~t-~~~IA~~agvsk~tlY~~F~sKe~L~~ 61 (192)
T 2fq4_A 18 LSASYELLLESGFKAVT-VDKIAERAKVSKATIYKWWPNKAAVVM 61 (192)
T ss_dssp HHHHHHHHHHHCTTTCC-HHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcCccccc-HHHHHHHcCCCHHHHHHHCCCHHHHHH
Confidence 44455568777775544 678899999999999999998765543
No 169
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=43.53 E-value=5.6 Score=29.43 Aligned_cols=44 Identities=9% Similarity=0.353 Sum_probs=33.0
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
+....+.|....|-.. ...+||+..|++..-|-..|.||-.=..
T Consensus 20 l~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~L~~ 63 (203)
T 3f1b_A 20 LDAAVDVFSDRGFHET-SMDAIAAKAEISKPMLYLYYGSKDELFA 63 (203)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHTTSCHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHcCcccc-cHHHHHHHhCCchHHHHHHhCCHHHHHH
Confidence 4445556777776444 4678899999999999999998875443
No 170
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=43.51 E-value=11 Score=23.72 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.3
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 56899999999999999998764
No 171
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=43.27 E-value=14 Score=26.81 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 45 DQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 45 ~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
.-+....+.|....|-... ..+||+..|+++..|-..|.||..=.
T Consensus 13 ~Il~aa~~l~~~~G~~~~t-v~~Ia~~agvs~~t~Y~~F~sK~~L~ 57 (195)
T 3ppb_A 13 AILETALQLFVSQGFHGTS-TATIAREAGVATGTLFHHFPSKEQLL 57 (195)
T ss_dssp HHHHHHHHHHHHTCSTTSC-HHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHHhcCcccCC-HHHHHHHhCCChhHHHHHcCCHHHHH
Confidence 3455666778888875544 77889999999999999999987543
No 172
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=43.10 E-value=47 Score=23.63 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHhh-----cCCCCCHHHHHHHHHhhCC---chhhhhhhhhc
Q psy1901 41 TFTGDQLEELERAFQ-----RTQYPDVYTREELAQKTKL---TEARVQVWFSN 85 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~-----~~~~ps~~~r~~LA~~l~l---~~~qV~~WFqN 85 (205)
.++.+++..|...|. .+.+.+..+...+...+|+ +..+|...|.+
T Consensus 18 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~ 70 (166)
T 2mys_B 18 MFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKE 70 (166)
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 478899999999984 3568999998888888865 66677776653
No 173
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.99 E-value=35 Score=21.31 Aligned_cols=48 Identities=13% Similarity=0.150 Sum_probs=30.3
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhC-Cch-hhhhhhhhch
Q psy1901 35 QRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTK-LTE-ARVQVWFSNR 86 (205)
Q Consensus 35 ~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~-l~~-~qV~~WFqNr 86 (205)
.|+....++.++..++++.|...+. . =..||..|. -+. ..|+.|+.++
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk-~---w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPK-N---FGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTT-C---HHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCC-C---HHHHHHHcCCCCHHHHHHHHHHhc
Confidence 3455678999999999999988652 2 244455553 333 3455555544
No 174
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=42.77 E-value=9.2 Score=28.19 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=32.3
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRAR 89 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k 89 (205)
+....+.|....|-... ..+||+..|++..-|-..|.||-.=
T Consensus 23 l~aa~~l~~~~G~~~~s-~~~Ia~~agvs~~t~Y~~F~sK~~L 64 (206)
T 3kz9_A 23 MEIALEVFARRGIGRGG-HADIAEIAQVSVATVFNYFPTREDL 64 (206)
T ss_dssp HHHHHHHHHHSCCSSCC-HHHHHHHHTSCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHhcCccccc-HHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 34445568888876544 6678999999999999999998643
No 175
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=42.59 E-value=12 Score=24.10 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.0
Q ss_pred HHHHHHhhCCchhhhhhhhhchHH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRRA 88 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR~ 88 (205)
..+||+.+|++...|..|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 468999999999999999987764
No 176
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=42.44 E-value=7 Score=28.82 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 45 DQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 45 ~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
.-+....+.|....|-.. ...+||+..|++..-|-..|.||-.=..
T Consensus 12 ~Il~aa~~l~~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 57 (206)
T 3dew_A 12 RLMEVATELFAQKGFYGV-SIRELAQAAGASISMISYHFGGKEGLYA 57 (206)
T ss_dssp HHHHHHHHHHHHHCGGGC-CHHHHHHHHTCCHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccC-cHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 344555666777775433 3667899999999999999998765433
No 177
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=42.43 E-value=7.2 Score=29.41 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=33.1
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
-+..-.+.|....|-.. ...+||+..|+++.-|-..|.||-.=.
T Consensus 14 Il~AA~~lf~~~G~~~~-s~~~IA~~AGvs~gtlY~~F~sKe~L~ 57 (203)
T 2np5_A 14 LAAALFDVAAESGLEGA-SVREVAKRAGVSIGAVQHHFSTKDEMF 57 (203)
T ss_dssp HHHHHHHHHHHHCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHHhChhhc-cHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 34555566877776533 367889999999999999999986543
No 178
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=42.36 E-value=3 Score=31.27 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=34.3
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
+....+.|....| . -...+||+..|+++.-|-..|.||-.=.
T Consensus 22 l~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L~ 63 (199)
T 2rek_A 22 IEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRWGLL 63 (199)
T ss_dssp HHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHHHHH
Confidence 4455667888889 5 5899999999999999999999886433
No 179
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=41.97 E-value=29 Score=24.01 Aligned_cols=45 Identities=7% Similarity=0.053 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHHhhc-----CCCCCHHHHHHHHHhhCCchhhhhhhh
Q psy1901 39 RTTFTGDQLEELERAFQR-----TQYPDVYTREELAQKTKLTEARVQVWF 83 (205)
Q Consensus 39 R~~~s~~q~~~Le~~F~~-----~~~ps~~~r~~LA~~l~l~~~qV~~WF 83 (205)
-+.++.+++..|++.|.. +.+.+..+...+....+++...|..+|
T Consensus 5 ~w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~ 54 (111)
T 2kgr_A 5 EWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIW 54 (111)
T ss_dssp CSSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHH
Confidence 356888999999999853 457888888888777788888877666
No 180
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=41.94 E-value=30 Score=26.55 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 40 TTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
..+|+.+..+|+-.... ..+++||+.++++++.|+....|-|.|.
T Consensus 148 ~~LT~rE~~vL~~l~~g------~s~~eIa~~l~is~~TV~~hi~~l~~KL 192 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEG------LTNKQIADRMFLAEKTVKNYVSRLLAKL 192 (225)
T ss_dssp TTSCHHHHHHHHHHHTT------CCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHCC------CCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 45899999988766543 2467899999999999999887666554
No 181
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=41.88 E-value=35 Score=21.87 Aligned_cols=44 Identities=9% Similarity=0.086 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHhh-----cCCCCCHHHHHHHHHhhC--Cchhhhhhhhh
Q psy1901 41 TFTGDQLEELERAFQ-----RTQYPDVYTREELAQKTK--LTEARVQVWFS 84 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~-----~~~~ps~~~r~~LA~~l~--l~~~qV~~WFq 84 (205)
.++.+++..|...|. .+.+.+..+...+...+| ++..+|..+|.
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 478889999999984 356889999888888887 45667766663
No 182
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=41.75 E-value=27 Score=21.48 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHhh-----cCCCCCHHHHHHHHHhhCC--chhhhhhhh
Q psy1901 42 FTGDQLEELERAFQ-----RTQYPDVYTREELAQKTKL--TEARVQVWF 83 (205)
Q Consensus 42 ~s~~q~~~Le~~F~-----~~~~ps~~~r~~LA~~l~l--~~~qV~~WF 83 (205)
++.+++..|...|. .+.+.+..+...+...+|+ +..+|+.+|
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 49 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELM 49 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 46778888888884 3457888888888877764 555666555
No 183
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=41.70 E-value=14 Score=24.09 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=20.8
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999998876
No 184
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=41.45 E-value=7.5 Score=28.52 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 45 DQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 45 ~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
.-+..-.+.|....|-.. ...+||+..|+++..|-..|.||..=.
T Consensus 16 ~Il~aA~~lf~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~~L~ 60 (199)
T 3on2_A 16 VLLARAESTLEKDGVDGL-SLRQLAREAGVSHAAPSKHFRDRQALL 60 (199)
T ss_dssp HHHHHHHHHHHHHCGGGC-CHHHHHHHTC-----CCCSSSSHHHHH
T ss_pred HHHHHHHHHHHhcChhhh-hHHHHHHHhCCChHHHHHHhCCHHHHH
Confidence 334455666777776433 367889999999999999999986543
No 185
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=41.24 E-value=19 Score=27.14 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=25.5
Q ss_pred HHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 51 ERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 51 e~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
.+.|....|-... ..+||+..|+++.-|-..|.||..=.
T Consensus 34 ~~lf~e~G~~~~s-~~~IA~~aGvskgtlY~yF~sKe~L~ 72 (214)
T 2oer_A 34 VQVLASEGAQRFT-TARVAERAGVSIGSLYQYFPNKAAIL 72 (214)
T ss_dssp HHC------CCCC-HHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHhhCccccc-HHHHHHHhCCCCchHHHhCCCHHHHH
Confidence 3447777765443 67889999999999999999986443
No 186
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=41.20 E-value=13 Score=23.15 Aligned_cols=23 Identities=26% Similarity=0.144 Sum_probs=20.2
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 56799999999999999998764
No 187
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=41.13 E-value=7.4 Score=28.74 Aligned_cols=23 Identities=17% Similarity=0.455 Sum_probs=20.2
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
...+|+.+|+...++++|+...|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 57889999999999999997655
No 188
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=41.00 E-value=38 Score=24.74 Aligned_cols=41 Identities=2% Similarity=0.051 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhc
Q psy1901 40 TTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSN 85 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqN 85 (205)
..++.+++..+...+... + ...+||+.+|++...|..|++.
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 357888887777777533 2 3567899999999999999964
No 189
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=40.78 E-value=21 Score=28.01 Aligned_cols=54 Identities=7% Similarity=0.095 Sum_probs=36.1
Q ss_pred CCCCCCCHHH-HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 37 RSRTTFTGDQ-LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 37 r~R~~~s~~q-~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
+.|..+++++ +..-.+.|....|-... ..+||+.+|++..-|-..|.||-.=..
T Consensus 11 ~~~~~~~r~~Il~aA~~l~~~~G~~~~s-~~~IA~~aGvs~~tlY~hF~~K~~Ll~ 65 (237)
T 2hxo_A 11 RRQEPLSRERIVGAAVELLDTVGERGLT-FRALAERLATGPGAIYWHITGKAELLG 65 (237)
T ss_dssp -----CCHHHHHHHHHHHHHHTTTTTCC-HHHHHHHHTSCGGGGGGTCCCHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHHhcCcccCC-HHHHHHHHCCChHHHHHhcCCHHHHHH
Confidence 3344455554 44556678888765444 677899999999999999998765443
No 190
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=40.44 E-value=46 Score=26.25 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 40 TTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
..+++.++.+|.-.. .. ...++||+.||++++.|+.-..|-+.|.
T Consensus 174 ~~Lt~re~~vl~~~~--~G----~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 174 VRLTARETEMLKWTA--VG----KTYGEIGLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp CCCCHHHHHHHHHHH--TT----CCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHH--cC----CCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 457777777776653 22 2257899999999999998776554443
No 191
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=40.24 E-value=13 Score=24.85 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=20.8
Q ss_pred HHHHHHhhCCchhhhhhhhhchHH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRRA 88 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR~ 88 (205)
..+||+.+|++...|..|..+++.
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCC
Confidence 567999999999999999987653
No 192
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=40.14 E-value=17 Score=23.56 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.3
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999998754
No 193
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=39.67 E-value=32 Score=24.83 Aligned_cols=40 Identities=3% Similarity=0.052 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhh
Q psy1901 40 TTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFS 84 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFq 84 (205)
..++.+++......+. ..+ ...+||+.+|++...|..|+.
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~----s~~~iA~~lgis~~TV~rw~~ 70 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGV----RPCDISRQLRVSHGCVSKILG 70 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 3588888877777775 332 356789999999999999995
No 194
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=39.60 E-value=8.5 Score=30.00 Aligned_cols=44 Identities=11% Similarity=0.204 Sum_probs=33.3
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
+....+.|....|-.. ...+||+..|+++.-|-..|.||-.=..
T Consensus 29 l~aA~~lf~~~G~~~~-s~~~IA~~agvs~~tlY~~F~sKe~L~~ 72 (231)
T 2zcx_A 29 LDAARELGTERGIREI-TLTDIAATVGMHKSALLRYFETREQIFL 72 (231)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHhCCcccC-CHHHHHHHhCCCHHHHHHhCCCHHHHHH
Confidence 4455566888777544 3678899999999999999999865443
No 195
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=39.49 E-value=50 Score=22.46 Aligned_cols=39 Identities=3% Similarity=0.026 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhh
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFS 84 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFq 84 (205)
.++.+++..+...+. +.+ ...+||+.+|++...|..|+.
T Consensus 17 ~~s~~~r~~i~~~~~-~g~----s~~~ia~~lgis~~Tv~~w~~ 55 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAA-DGI----RPCVISRQLRVSHGCVSKILN 55 (128)
T ss_dssp CCCHHHHHHHHHHHH-TTC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 478888777777775 332 246789999999999999995
No 196
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=39.47 E-value=14 Score=27.91 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=33.7
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
+..-.+.|.+..|-... ..+||+..|+++.-|-..|.||..=..
T Consensus 17 l~aA~~lf~~~G~~~~s-~~~IA~~aGvskgtlY~~F~sKe~L~~ 60 (210)
T 2wui_A 17 LDAAERVFLEKGVGTTA-MADLADAAGVSRGAVYGHYKNKIEVCL 60 (210)
T ss_dssp HHHHHHHHHHSCTTTCC-HHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcCccccC-HHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 44445668888876544 678899999999999999998875443
No 197
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=39.41 E-value=19 Score=26.94 Aligned_cols=42 Identities=12% Similarity=0.229 Sum_probs=32.6
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRAR 89 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k 89 (205)
+....+.|....|-... ..+||+..|++..-|-..|.||-.=
T Consensus 36 l~aA~~l~~~~G~~~~t-~~~IA~~aGvs~~t~Y~~F~sK~~L 77 (222)
T 3bru_A 36 IRAGLEHLTEKGYSSVG-VDEILKAARVPKGSFYHYFRNKADF 77 (222)
T ss_dssp HHHHHHHHHHSCTTTCC-HHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCCCcCc-HHHHHHHhCCCcchhhhhCCCHHHH
Confidence 44556668888775443 6788999999999999999998653
No 198
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=39.39 E-value=16 Score=26.70 Aligned_cols=47 Identities=15% Similarity=0.334 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 44 GDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 44 ~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
..-+....+.|....|-.. ...+||+..|+++..|-..|.||-.=..
T Consensus 14 ~~il~aa~~lf~~~G~~~~-tv~~Ia~~agvs~~t~Y~~F~sK~~L~~ 60 (196)
T 3he0_A 14 DQILAAAEQLIAESGFQGL-SMQKLANEAGVAAGTIYRYFSDKEHLLE 60 (196)
T ss_dssp HHHHHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccC-CHHHHHHHhCCCcchHHHhcCCHHHHHH
Confidence 3445566777888877544 3678899999999999999998875443
No 199
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=39.38 E-value=22 Score=25.70 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=24.3
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhHHH
Q psy1901 48 EELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNSQQ 98 (205)
Q Consensus 48 ~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~~~ 98 (205)
.+..-+|+.|+||..+-... | =.|||.|||++..+..
T Consensus 16 RiIkiLyQSNPyP~peGTRq-a-------------RRNRRRRWR~RQrQI~ 52 (115)
T 2x7l_M 16 RLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQIH 52 (115)
T ss_dssp HHHHHHHHSSCCCCCCCCTT-T-------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCchh-h-------------hHhHHHHHHHHHHHHH
Confidence 45555689999998742111 1 1489999988876654
No 200
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=39.29 E-value=13 Score=28.02 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 45 DQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 45 ~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
.-+..-.+.|....|-... ..+||+..|+++.-|-..|.||..=.
T Consensus 15 ~Il~aA~~lf~~~G~~~~s-~~~IA~~aGvskgtlY~~F~sKe~L~ 59 (219)
T 2w53_A 15 GILDAAEACFHEHGVARTT-LEMIGARAGYTRGAVYWHFKNKSEVL 59 (219)
T ss_dssp HHHHHHHHHHHHHCTTTCC-HHHHHHHHTSCHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHHhCcccCC-HHHHHHHhCCCchHHhhcCCCHHHHH
Confidence 3455566778888875543 67889999999999999999986543
No 201
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=39.22 E-value=8 Score=29.13 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=32.6
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRAR 89 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k 89 (205)
+..-.+.|....|-... ..+||+..|+++.-|-..|.||..=
T Consensus 16 l~aA~~lf~~~G~~~~s-~~~IA~~aGvs~~t~Y~~F~sKe~L 57 (210)
T 3vib_A 16 MLAALETFYRKGIARTS-LNEIAQAAGVTRDALYWHFKNKEDL 57 (210)
T ss_dssp HHHHHHHHHHHCTTTCC-HHHHHHHHTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhCcccCC-HHHHHHHHCcCHHHHHHHCCCHHHH
Confidence 34445668888875544 6788999999999999999998653
No 202
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=39.11 E-value=7.6 Score=29.92 Aligned_cols=43 Identities=7% Similarity=0.171 Sum_probs=32.3
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
+..-.+.|....|-.. ...+||+..|++..-|-..|.||-.=.
T Consensus 22 l~aA~~l~~~~G~~~~-s~~~IA~~agvs~~t~Y~~F~~K~~L~ 64 (216)
T 2oi8_A 22 KDHAWEQIATAGASAL-SLNAIAKRMGMSGPALYRYFDGRDELI 64 (216)
T ss_dssp HHHHHHHHHHHCTTSC-CHHHHHHHTTCCHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHhcCcccC-CHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 4445566777776543 367889999999999999999886533
No 203
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=39.02 E-value=14 Score=23.28 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.6
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998876
No 204
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=38.99 E-value=14 Score=27.12 Aligned_cols=47 Identities=15% Similarity=0.120 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHH
Q psy1901 44 GDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92 (205)
Q Consensus 44 ~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 92 (205)
..-+..-.+.|....|- -...+||+..|+++..|...|.||..=...
T Consensus 12 ~~Il~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK~~L~~~ 58 (190)
T 3jsj_A 12 ERLLEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESKDELLAA 58 (190)
T ss_dssp HHHHHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 34455666678888877 568899999999999999999988755443
No 205
>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}
Probab=38.75 E-value=80 Score=24.94 Aligned_cols=59 Identities=10% Similarity=0.063 Sum_probs=37.8
Q ss_pred HHHHHhhcCCCC-C-HHHHHHHHHhhCCchhhhhhhhhc-hHHHHHHHHhHHHhhhhccccc
Q psy1901 49 ELERAFQRTQYP-D-VYTREELAQKTKLTEARVQVWFSN-RRARLRKQLNSQQLNAFNSMSL 107 (205)
Q Consensus 49 ~Le~~F~~~~~p-s-~~~r~~LA~~l~l~~~qV~~WFqN-rR~k~kr~~~~~~~~~~~s~~~ 107 (205)
+++.+|.....+ + .....+||.++||....+.-++.. ...+..-+............+.
T Consensus 123 lf~a~~~~g~~i~d~~~~L~~~a~~~Gld~~~~~~~l~s~~~~~~~v~~~~~~a~~~Gv~Gv 184 (239)
T 3gl5_A 123 FYRGNFADERSVFNDDERLVELAVGAGLDAEEVRAVLADPAAYADEVRADEREAAQLGATGV 184 (239)
T ss_dssp HHHHHHTCSSCCSSCHHHHHHHHHHTTCCHHHHHHHHHCTTTTHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHcCcHhHHHHHHHHHHHHHHCCCCee
Confidence 344445555555 5 688999999999999999999987 5554444433333333333333
No 206
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=38.58 E-value=47 Score=23.56 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=33.1
Q ss_pred CCCCCCCCCHHHHHHHHHHhhc-----CCCCCHHHHHHHHHhhCC--chhhhhhhh
Q psy1901 35 QRRSRTTFTGDQLEELERAFQR-----TQYPDVYTREELAQKTKL--TEARVQVWF 83 (205)
Q Consensus 35 ~rr~R~~~s~~q~~~Le~~F~~-----~~~ps~~~r~~LA~~l~l--~~~qV~~WF 83 (205)
..+.+..++.+++..|++.|.. +.+.+..+-..+...+|+ +...|...|
T Consensus 15 ~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 70 (169)
T 3qrx_A 15 QKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMI 70 (169)
T ss_dssp -----CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCCCHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3455678999999999999853 467888888888877764 445554444
No 207
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=38.54 E-value=43 Score=23.45 Aligned_cols=44 Identities=5% Similarity=0.082 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhC--CchhhhhhhhhchHH
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTK--LTEARVQVWFSNRRA 88 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~--l~~~qV~~WFqNrR~ 88 (205)
.++.++...+... ..++..+. .+|+..|| ++...|..|+.....
T Consensus 60 ~l~~~~~~~i~~~-~~~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 60 ALSVRDERNVIRA-ASNSCKTA---RDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp SSCHHHHHHHHHH-HHHCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred cCCHHHHHHHHHH-HhCCCCCH---HHHHHHHCCCccHHHHHHHHHHCCC
Confidence 4788887777766 44554454 45777778 799999999965544
No 208
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=38.33 E-value=13 Score=28.31 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=31.8
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRA 88 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~ 88 (205)
+..-.+.|....|-... ..+||+..|+++.-|..+|.||-.
T Consensus 20 l~AA~~lf~~~G~~~~s-~~~IA~~AGvs~~tlY~~F~sKe~ 60 (208)
T 3v6g_A 20 VEAAERVIARQGLGGLS-HRRVAAEANVPVGSTTYYFNDLDA 60 (208)
T ss_dssp HHHHHHHHHHHCTTCCC-HHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhCcccCC-HHHHHHHhCCCchhHHHHcCCHHH
Confidence 44555668888775443 667899999999999999998864
No 209
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=38.20 E-value=15 Score=23.37 Aligned_cols=23 Identities=4% Similarity=0.075 Sum_probs=20.4
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|..+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999998765
No 210
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=37.55 E-value=44 Score=25.09 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHH
Q psy1901 40 TTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 92 (205)
..+++.+..+|+-..... .+.+||+.++++++.|+.-..|=|.|..-
T Consensus 153 ~~Lt~rE~~vl~~l~~g~------s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~ 199 (215)
T 1a04_A 153 NQLTPRERDILKLIAQGL------PNKMIARRLDITESTVKVHVKHMLKKMKL 199 (215)
T ss_dssp GGSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 348999999988765432 37889999999999999988777666543
No 211
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=37.54 E-value=11 Score=28.75 Aligned_cols=43 Identities=19% Similarity=0.243 Sum_probs=32.3
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
+..-.+.|....|-... ..+||+..|+++.-|...|.||-.=.
T Consensus 41 l~aA~~lf~~~G~~~~t-~~~IA~~AGvs~~tlY~~F~sKe~L~ 83 (221)
T 3g7r_A 41 LGTATRIFYAEGIHSVG-IDRITAEAQVTRATLYRHFSGKDDLI 83 (221)
T ss_dssp HHHHHHHHHHHCSTTSC-HHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHhCcccCC-HHHHHHHhCCCHHHHHHHCCCHHHHH
Confidence 34445567777765443 67789999999999999999886543
No 212
>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*
Probab=37.04 E-value=91 Score=23.51 Aligned_cols=42 Identities=12% Similarity=0.072 Sum_probs=29.8
Q ss_pred HHhhcCCCC-CHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 52 RAFQRTQYP-DVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 52 ~~F~~~~~p-s~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
.+|.....+ +......+|.++||....+.-++.....+.+-+
T Consensus 112 a~~~~~~~i~~~~~L~~~a~~~Gld~~~~~~~~~s~~~~~~v~ 154 (203)
T 2imf_A 112 AVWGEGIAPDLESLPALVSEKLGWDRSAFEHFLSSNAATERYD 154 (203)
T ss_dssp HHHHSCCCTTCTTHHHHHHHHHTCCHHHHHHHHHSHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCHHHHHHHH
Confidence 334445444 467778999999999999999987765554433
No 213
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=36.82 E-value=1.3e+02 Score=22.52 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=28.3
Q ss_pred cCCCC-CHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 56 RTQYP-DVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 56 ~~~~p-s~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
...-. +.....+||+++||....+.-++.....+..-+
T Consensus 125 ~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~ 163 (216)
T 2in3_A 125 GQEDVAQLAILKKLAVDLGIPESRFTPVFQSDEAKQRTL 163 (216)
T ss_dssp TCCCTTSHHHHHHHHHHTTCCHHHHHHHHHSHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHcCCCHHHHHHHhcchHHHHHHH
Confidence 44433 578889999999999999998887765554433
No 214
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=36.46 E-value=11 Score=27.94 Aligned_cols=46 Identities=11% Similarity=0.106 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 44 GDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 44 ~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
..-+....+.|....|-. -...+||+..|+++..|-..|.||..=.
T Consensus 12 ~~Il~aa~~l~~~~G~~~-~ti~~IA~~agvs~~t~Y~~F~sK~~L~ 57 (193)
T 2dg8_A 12 ERILAATLDLIAEEGIAR-VSHRRIAQRAGVPLGSMTYHFTGIEQLL 57 (193)
T ss_dssp HHHHHHHHHHHHHHCGGG-CCHHHHHHHHTSCTHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHHHHhChhh-ccHHHHHHHhCCCchhhheeCCCHHHHH
Confidence 334555666677777643 3367889999999999999999887543
No 215
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=35.95 E-value=6 Score=23.72 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhc
Q psy1901 42 FTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSN 85 (205)
Q Consensus 42 ~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqN 85 (205)
++.+.-..|.++-...+-.+.+...+.|.+|||...-|..+|..
T Consensus 4 wseeverklkefvrrhqeitqetlheyaqklglnqqaieqffre 47 (52)
T 1y66_A 4 WSEEVERKLKEFVRRHQEITQETLHEYAQKLGLNQQAIEQFFRE 47 (52)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 34555556666666666677777888999999999999999854
No 216
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=35.90 E-value=28 Score=24.71 Aligned_cols=40 Identities=8% Similarity=0.033 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchH
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
.++.+++..|.+..... ..+||+.+|++...|..|-.+++
T Consensus 70 ~~~~~~l~~~R~~~gls-------q~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 70 TVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp TCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHcCCC-------HHHHHHHHCCCHHHHHHHHCCCC
Confidence 35555666665543222 35789999999999999998765
No 217
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=35.83 E-value=18 Score=26.67 Aligned_cols=43 Identities=19% Similarity=0.330 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHH
Q psy1901 45 DQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRA 88 (205)
Q Consensus 45 ~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~ 88 (205)
.-+....+.|....|-.. ...+||+..|+++..|-..|.||-.
T Consensus 11 ~Il~aA~~l~~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~sK~~ 53 (195)
T 2dg7_A 11 RLKRAALELYSEHGYDNV-TVTDIAERAGLTRRSYFRYFPDKRE 53 (195)
T ss_dssp HHHHHHHHHHHHSCGGGC-CHHHHHHHTTCCHHHHHHHCSSTTG
T ss_pred HHHHHHHHHHHhcCcccc-CHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 345556666888776443 3678899999999999999988754
No 218
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0
Probab=35.77 E-value=1.3e+02 Score=22.51 Aligned_cols=45 Identities=0% Similarity=-0.107 Sum_probs=32.7
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHhh-CCchhhhhhhhhchHHHHHHH
Q psy1901 49 ELERAFQRTQYPDVYTREELAQKT-KLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 49 ~Le~~F~~~~~ps~~~r~~LA~~l-~l~~~qV~~WFqNrR~k~kr~ 93 (205)
.++..|......+......+|.++ ||....+.-.+.+...+.+-+
T Consensus 87 lf~a~~~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~v~ 132 (189)
T 3l9v_A 87 FFTAGMVEKRLHSPDDVRRVFMSATGISRGEYDRSIKSPAVNDMVA 132 (189)
T ss_dssp HHHHHTTTCCCCSHHHHHHHHHHHHCCCHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHhhhccCCCHHHHHHHHHHccCCCHHHHHHHHhhHHHHHHHH
Confidence 334445444567888899999999 999999988887765554433
No 219
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=35.54 E-value=17 Score=24.06 Aligned_cols=23 Identities=9% Similarity=0.224 Sum_probs=20.5
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 57899999999999999998764
No 220
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=35.34 E-value=7.7 Score=29.98 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=33.2
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
+....+.|....|-. -...+||+..|+++.-|-..|.||-.=..
T Consensus 19 l~AA~~l~~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~ 62 (231)
T 2qib_A 19 IGVALDLFSRRSPDE-VSIDEIASAAGISRPLVYHYFPGKLSLYE 62 (231)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcCchh-cCHHHHHHHhCCCHHHHHHHCCCHHHHHH
Confidence 445556688887633 34678899999999999999998865443
No 221
>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}
Probab=35.31 E-value=93 Score=23.61 Aligned_cols=48 Identities=8% Similarity=-0.001 Sum_probs=33.0
Q ss_pred hhcCCC-CCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHHhHHHhhh
Q psy1901 54 FQRTQY-PDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNSQQLNA 101 (205)
Q Consensus 54 F~~~~~-ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~~~~~~ 101 (205)
|..... -+.....++|.++||....+.-++.....+..-+........
T Consensus 120 ~~~g~~i~~~~~L~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~ 168 (202)
T 3fz5_A 120 FSDRLDTASPEAVSRLGPEVGLEPEALLAGIADPALKETVRKIGEDAVA 168 (202)
T ss_dssp TTTCCCTTCHHHHHTTHHHHTCCHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 334443 467888999999999999999888876655554444333333
No 222
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=35.28 E-value=18 Score=23.11 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=20.4
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999998765
No 223
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=35.02 E-value=20 Score=23.59 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=18.2
Q ss_pred HHHHHHHhhCCchhhhhhhhh
Q psy1901 64 TREELAQKTKLTEARVQVWFS 84 (205)
Q Consensus 64 ~r~~LA~~l~l~~~qV~~WFq 84 (205)
.+.++|+.+|++.+.|+.|-.
T Consensus 7 ~i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 7 RIRTIARMTGIREATLRAWER 27 (81)
T ss_dssp EHHHHHHTTSTTHHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHHH
Confidence 357899999999999999964
No 224
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=34.95 E-value=18 Score=22.43 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=17.8
Q ss_pred HHHHHHhhCCchhhhhhhh
Q psy1901 65 REELAQKTKLTEARVQVWF 83 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WF 83 (205)
..+||+.||++..-|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4789999999999999998
No 225
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=34.85 E-value=8.3 Score=29.62 Aligned_cols=44 Identities=16% Similarity=0.420 Sum_probs=32.8
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
+....+.|....|-.. ...+||+..|+++.-|-..|.||-.=..
T Consensus 45 l~AA~~lf~e~G~~~~-tv~~IA~~AGvs~~tlY~~F~sKe~Ll~ 88 (214)
T 2guh_A 45 VDAAGRAFATRPYREI-TLKDIAEDAGVSAPLIIKYFGSKEQLFD 88 (214)
T ss_dssp HHHHHHHHHHSCGGGC-CHHHHHHHHTSCHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHHcChhhc-CHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 4445566888876443 3667899999999999999998765443
No 226
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=34.72 E-value=8.2 Score=29.81 Aligned_cols=44 Identities=7% Similarity=0.021 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHH
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRAR 89 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k 89 (205)
.+++.+..+|.-.|. ......+||+.||++...|+.++..-+.+
T Consensus 198 ~L~~~~r~vl~l~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 198 ELDERERLIVYLRYY-----KDQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp -------------------------------------------------
T ss_pred hCCHHHHHHHHHHHh-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 367777777766553 23456789999999999999988644443
No 227
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=34.71 E-value=19 Score=23.11 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=20.2
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46899999999999999998764
No 228
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=34.66 E-value=8.3 Score=28.56 Aligned_cols=43 Identities=12% Similarity=0.191 Sum_probs=32.4
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
+....+.|....|-.. ...+||+..|++...|-..|.||-.=.
T Consensus 18 l~aa~~l~~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 60 (202)
T 3lwj_A 18 LTCSLDLFIEKGYYNT-SIRDIIALSEVGTGTFYNYFVDKEDIL 60 (202)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHCSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHhCCCchhHHHHcCCHHHHH
Confidence 4445566777776433 367889999999999999999886443
No 229
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=34.55 E-value=76 Score=22.06 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=35.3
Q ss_pred CCCCCCCHHHHHHHHHHhhc-----CCCCCHHHHHHHHHhhC--Cchhhhhhhh
Q psy1901 37 RSRTTFTGDQLEELERAFQR-----TQYPDVYTREELAQKTK--LTEARVQVWF 83 (205)
Q Consensus 37 r~R~~~s~~q~~~Le~~F~~-----~~~ps~~~r~~LA~~l~--l~~~qV~~WF 83 (205)
..+..++.+++..|.+.|.. +.+.+..+-..+...+| ++...|+..|
T Consensus 12 ~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~ 65 (161)
T 3fwb_A 12 PLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLI 65 (161)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34567999999999999953 46788888888887776 4555665555
No 230
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=34.34 E-value=52 Score=23.04 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHhhc------CCCCCHHHHHHHHHhhC--Cchhhhhhhhh
Q psy1901 40 TTFTGDQLEELERAFQR------TQYPDVYTREELAQKTK--LTEARVQVWFS 84 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~~------~~~ps~~~r~~LA~~l~--l~~~qV~~WFq 84 (205)
..++.+++..|.+.|.. +.+.+..+-..+...+| ++...|+.+|.
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 10 EQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp GGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45889999999999842 55788888888888777 56666666663
No 231
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=34.23 E-value=7.5 Score=29.86 Aligned_cols=46 Identities=15% Similarity=0.316 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 92 (205)
-+..-.+.|....|-. -...+||+..|+++.-|-..|.||-.=..-
T Consensus 35 Il~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~sK~~L~~a 80 (226)
T 2pz9_A 35 IVAAAKEEFARHGIAG-ARVDRIAKQARTSKERVYAYFRSKEALYAH 80 (226)
T ss_dssp HHHHHHHHHHHHHHHH-CCHHHHHHHTTSCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHhCccc-CcHHHHHHHHCCChHHHHHHcCCHHHHHHH
Confidence 3445556676666532 236788999999999999999988754433
No 232
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=33.99 E-value=53 Score=20.87 Aligned_cols=40 Identities=10% Similarity=0.194 Sum_probs=26.8
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCC
Q psy1901 32 KRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKL 74 (205)
Q Consensus 32 ~~k~rr~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l 74 (205)
+++++++|..++.++-..|.+.......-.. ..||..+++
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W---~~Ia~~~~~ 42 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNW---SKILLHYKF 42 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCH---HHHHHHSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcH---HHHHHHcCc
Confidence 3556777888999999999888765442233 345666653
No 233
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=33.45 E-value=24 Score=22.23 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=18.6
Q ss_pred HHHHHHhhCCchhhhhhhhhc
Q psy1901 65 REELAQKTKLTEARVQVWFSN 85 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqN 85 (205)
..++|+.||++.+.|..|..+
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 568999999999999999865
No 234
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=33.41 E-value=9.2 Score=28.48 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=32.8
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
+....+.|....|-.. ...+||+..|++...|-..|.||..=..
T Consensus 24 l~aa~~l~~~~G~~~~-s~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 67 (212)
T 1pb6_A 24 LSAALDTFSQFGFHGT-RLEQIAELAGVSKTNLLYYFPSKEALYI 67 (212)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHTTSCHHHHHHHSSSHHHHHH
T ss_pred HHHHHHHHHHcCcchh-hHHHHHHHHCCChhHHHHhCCCHHHHHH
Confidence 4455556777776433 4678899999999999999999865433
No 235
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=33.38 E-value=1.5e+02 Score=22.25 Aligned_cols=41 Identities=15% Similarity=0.001 Sum_probs=29.9
Q ss_pred HhhcCC-CCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 53 AFQRTQ-YPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 53 ~F~~~~-~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
+|.... .-+.....++|+++||....+.-++.....+..-+
T Consensus 115 ~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~ 156 (208)
T 3kzq_A 115 YYLRAMPPHEEATHLQLAKEIGLNVQQFKNDMDGTLLEGVFQ 156 (208)
T ss_dssp HHTSCCCTTCHHHHHHHHHHTTCCHHHHHHHHTSHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHH
Confidence 344443 45778889999999999999999887665444433
No 236
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=32.94 E-value=86 Score=21.35 Aligned_cols=44 Identities=18% Similarity=0.282 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHhhc-----CCCCCHHHHHHHHHhhCC--chhhhhhhhhc
Q psy1901 42 FTGDQLEELERAFQR-----TQYPDVYTREELAQKTKL--TEARVQVWFSN 85 (205)
Q Consensus 42 ~s~~q~~~Le~~F~~-----~~~ps~~~r~~LA~~l~l--~~~qV~~WFqN 85 (205)
|+.+|+..|.+.|.. +.+.+..+-..+...+|+ +...|...|..
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 51 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE 51 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCCCHHHHHTTTTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 578899999999953 468999988888888764 55666666543
No 237
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=32.94 E-value=19 Score=26.78 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 45 DQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 45 ~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
.-+....+.|....|-... ..+||+..|+++..|-..|.||..=.
T Consensus 14 ~Il~aa~~l~~~~G~~~~t-i~~Ia~~agvs~~t~Y~~F~sK~~L~ 58 (216)
T 3s5r_A 14 LLLDAATTLFAEQGIAATT-MAEIAASVGVNPAMIHYYFKTRDSLL 58 (216)
T ss_dssp HHHHHHHHHHHHHCTTTCC-HHHHHHTTTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHHHcCcccCC-HHHHHHHHCCCHHHHHHHcCCHHHHH
Confidence 3455566668887765443 67889999999999999999887543
No 238
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=32.72 E-value=87 Score=21.81 Aligned_cols=46 Identities=13% Similarity=0.291 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHhh-----cCCCCCHHHHHHHHHhhC--Cchhhhhhhhhc
Q psy1901 40 TTFTGDQLEELERAFQ-----RTQYPDVYTREELAQKTK--LTEARVQVWFSN 85 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~-----~~~~ps~~~r~~LA~~l~--l~~~qV~~WFqN 85 (205)
..++.+++..|++.|. .+.+.+..+...+...+| ++...|...|.+
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 62 (156)
T 1wdc_B 10 TKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKE 62 (156)
T ss_dssp --CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSSCCCHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 4589999999999984 356899999888888876 566677777653
No 239
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=32.61 E-value=29 Score=25.88 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHhh-----cCCCCCHHHHHHHHHhhCCc
Q psy1901 40 TTFTGDQLEELERAFQ-----RTQYPDVYTREELAQKTKLT 75 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~-----~~~~ps~~~r~~LA~~l~l~ 75 (205)
+.||.+|+..|++.|. .+.+.+..+-..+...+|+.
T Consensus 3 ~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~ 43 (176)
T 2lhi_A 3 SNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLS 43 (176)
T ss_dssp CCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCC
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCC
Confidence 5689999999999985 34688998888888888754
No 240
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=32.60 E-value=10 Score=28.51 Aligned_cols=44 Identities=9% Similarity=0.231 Sum_probs=10.1
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
-+....+.|....|-... ..+||+..|+++.-|...|.||-.=.
T Consensus 35 Il~aa~~l~~~~G~~~~t-i~~IA~~agvs~~t~Y~~F~sK~~Ll 78 (212)
T 2np3_A 35 ILTAARVCFAERGFDATS-LRRIAETAGVDQSLVHHFYGTKENLF 78 (212)
T ss_dssp CHHHHHHHC----------------------------CCC-CHHH
T ss_pred HHHHHHHHHHHcCccccc-HHHHHHHcCCCHHHHHHHhCCHHHHH
Confidence 355566677777765544 67889999999999999999886443
No 241
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=32.47 E-value=34 Score=26.66 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=19.9
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|..+++
T Consensus 33 ~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 33 QESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp SHHHHHHHTSCHHHHHHHTTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999998754
No 242
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=32.46 E-value=64 Score=22.50 Aligned_cols=47 Identities=15% Similarity=0.301 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHHHHHhh-----cCCCCCHHHHHHHHHhhC--Cchhhhhhhhh
Q psy1901 38 SRTTFTGDQLEELERAFQ-----RTQYPDVYTREELAQKTK--LTEARVQVWFS 84 (205)
Q Consensus 38 ~R~~~s~~q~~~Le~~F~-----~~~~ps~~~r~~LA~~l~--l~~~qV~~WFq 84 (205)
+++.++.+++..|.+.|. .+.+.+..+...+...+| ++..+|...|.
T Consensus 6 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 59 (153)
T 2ovk_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLK 59 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 356799999999999985 346889888888877776 45555555553
No 243
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=32.30 E-value=29 Score=25.51 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=33.7
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
-+....+.|....|-.. ...+||+..|+++..|..+|.||-.=.
T Consensus 9 Il~aa~~l~~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 52 (185)
T 2yve_A 9 ILRTAIDYIGEYSLETL-SYDSLAEATGLSKSGLIYHFPSRHALL 52 (185)
T ss_dssp HHHHHHHHHHHSCSTTC-CHHHHHHHHCCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHHcChhhc-cHHHHHHHhCCChHHHHHhCcCHHHHH
Confidence 45556667888887543 367889999999999999999876443
No 244
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=32.08 E-value=13 Score=27.42 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 45 DQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 45 ~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
.-+....+.|....|-.. ...+||+..|+++..|-..|.||-.=.
T Consensus 20 ~Il~aa~~l~~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~sK~~Ll 64 (211)
T 3him_A 20 RIRAAAIEVFAAKGYGAT-TTREIAASLDMSPGAVYPHYKTKESLL 64 (211)
T ss_dssp HHHHHHHHHHHHHCSTTC-CHHHHHHHTTCCTTSSTTTCSSHHHHH
T ss_pred HHHHHHHHHHHHcCCCcC-CHHHHHHHhCCCcChhhhcCCCHHHHH
Confidence 344555666888777543 367889999999999999999887543
No 245
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=31.55 E-value=22 Score=23.22 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.3
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|..+++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999998764
No 246
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=31.50 E-value=21 Score=24.06 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=20.8
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|..+++
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~~ 62 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNEN 62 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999998865
No 247
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=31.45 E-value=12 Score=27.72 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=31.9
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRA 88 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~ 88 (205)
+....+.|....|-... ..+||+..|++...|...|.||-.
T Consensus 20 l~aa~~l~~~~G~~~~t-i~~IA~~agvs~~t~Y~~F~sK~~ 60 (212)
T 3knw_A 20 LDSGFHLVLRKGFVGVG-LQEILKTSGVPKGSFYHYFESKEA 60 (212)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCCccCC-HHHHHHHhCCChHHHHHHCCCHHH
Confidence 44555667777765443 678899999999999999999875
No 248
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=31.39 E-value=45 Score=24.58 Aligned_cols=28 Identities=21% Similarity=0.494 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHhhCCch-----hhhhhhhhch
Q psy1901 59 YPDVYTREELAQKTKLTE-----ARVQVWFSNR 86 (205)
Q Consensus 59 ~ps~~~r~~LA~~l~l~~-----~qV~~WFqNr 86 (205)
-.+...|++||.+||++. .+..||....
T Consensus 80 DsSl~~RkeLA~eL~~~~~~~dSA~mNiwLHk~ 112 (130)
T 2gqb_A 80 DSSLSARKELAKELGYSGDMNDSASMNIWLHKQ 112 (130)
T ss_dssp CCSHHHHHHHHHHHTCCCSSCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Confidence 478899999999999773 4567788633
No 249
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=31.39 E-value=83 Score=21.45 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHhh-----cCCCCCHHHHHHHHHhhC--Cchhhhhhhhh
Q psy1901 42 FTGDQLEELERAFQ-----RTQYPDVYTREELAQKTK--LTEARVQVWFS 84 (205)
Q Consensus 42 ~s~~q~~~Le~~F~-----~~~~ps~~~r~~LA~~l~--l~~~qV~~WFq 84 (205)
++++++..|++.|. .+.+.+..+...+...+| ++..+|...|.
T Consensus 2 l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~ 51 (149)
T 2mys_C 2 FSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILG 51 (149)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 67788888888884 345788888887777776 45566666663
No 250
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=31.36 E-value=11 Score=30.42 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=33.3
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
+....+.|....|-... ..+||+..|+++..|-.+|.||-.=.
T Consensus 47 l~AA~~lf~e~G~~~~S-~~~IA~~AGVs~~tlY~hF~sKe~Ll 89 (273)
T 3c07_A 47 LETAMRLFQERGYDRTT-MRAIAQEAGVSVGNAYYYFAGKEHLI 89 (273)
T ss_dssp HHHHHHHHHHTCSTTCC-HHHHHHHHTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHhCCccccC-HHHHHHHHCCCHHHHHHHcCCHHHHH
Confidence 45556678888875443 67889999999999999999886543
No 251
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=30.68 E-value=61 Score=20.64 Aligned_cols=42 Identities=24% Similarity=0.308 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHhh-----cCCCCCHHHHHHHHHhhC--Cchhhhhhhhh
Q psy1901 43 TGDQLEELERAFQ-----RTQYPDVYTREELAQKTK--LTEARVQVWFS 84 (205)
Q Consensus 43 s~~q~~~Le~~F~-----~~~~ps~~~r~~LA~~l~--l~~~qV~~WFq 84 (205)
+.++...|...|. .+.+.+..+...+...+| ++..+|..+|.
T Consensus 4 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 52 (92)
T 2kn2_A 4 DTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIK 52 (92)
T ss_dssp CCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4456666777763 345788888888888877 56666666653
No 252
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=30.52 E-value=5.7 Score=31.13 Aligned_cols=44 Identities=11% Similarity=0.234 Sum_probs=32.8
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
+....+.|....|-.. ...+||+..|+++.-|-..|.||-.=..
T Consensus 52 l~aA~~lf~~~G~~~~-t~~~IA~~aGvs~~t~Y~~F~sKe~Ll~ 95 (245)
T 3aqt_A 52 ITSARTLMAERGVDNV-GIAEITEGANIGTGTFYNYFPDREQLLQ 95 (245)
T ss_dssp HHHHHHHHHHHCGGGC-CHHHHHHHTTSCGGGGGGTCSSHHHHHH
T ss_pred HHHHHHHHHhcCcccC-cHHHHHHHhCCChHHHHHHcCCHHHHHH
Confidence 4445566777776443 3678899999999999999999875443
No 253
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=30.30 E-value=23 Score=22.61 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.1
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|-.+++
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 46899999999999999998764
No 254
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=30.30 E-value=75 Score=22.91 Aligned_cols=44 Identities=7% Similarity=0.087 Sum_probs=34.8
Q ss_pred CCCCCCCHHHHHHHHHHhhc----CCCCCHHHHHHHHHhhCCchhhhh
Q psy1901 37 RSRTTFTGDQLEELERAFQR----TQYPDVYTREELAQKTKLTEARVQ 80 (205)
Q Consensus 37 r~R~~~s~~q~~~Le~~F~~----~~~ps~~~r~~LA~~l~l~~~qV~ 80 (205)
...+.++++++..+++.|.. +.+.+..+...+-.+.||+..++.
T Consensus 22 ~~~W~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~~~L~ 69 (121)
T 3fia_A 22 LDTWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLA 69 (121)
T ss_dssp TTTSCCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCHHHHH
Confidence 45678999999999999964 356778888888888888877653
No 255
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=30.27 E-value=23 Score=22.74 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=19.1
Q ss_pred HHHHHHhhCCchhhhhhhhhc
Q psy1901 65 REELAQKTKLTEARVQVWFSN 85 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqN 85 (205)
..+||+.+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 467999999999999999987
No 256
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=30.21 E-value=26 Score=21.50 Aligned_cols=21 Identities=10% Similarity=0.161 Sum_probs=18.1
Q ss_pred HHHHHHhhCCchhhhhhhhhc
Q psy1901 65 REELAQKTKLTEARVQVWFSN 85 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqN 85 (205)
..++|+.||++...|..|..+
T Consensus 16 ~~~~A~~lgis~~~vs~~~~~ 36 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVRA 36 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 567999999999999999843
No 257
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=30.13 E-value=24 Score=23.15 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.3
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|..+++
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998765
No 258
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=30.03 E-value=24 Score=26.42 Aligned_cols=45 Identities=11% Similarity=0.241 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
-+..-.+.|.+..|-... ..+||+..|+++.-|-.+|.||-.=..
T Consensus 13 Il~aA~~lf~~~G~~~~s-~~~IA~~aGvs~~tiY~~F~sKe~L~~ 57 (202)
T 2d6y_A 13 IFEAAVAEFARHGIAGAR-IDRIAAEARANKQLIYAYYGNKGELFA 57 (202)
T ss_dssp HHHHHHHHHHHHTTTSCC-HHHHHHHHTCCHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHHHcCcccCC-HHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 355556678887765443 678899999999999999998875443
No 259
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=29.93 E-value=1.1e+02 Score=19.48 Aligned_cols=53 Identities=13% Similarity=0.084 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHH
Q psy1901 42 FTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 94 (205)
Q Consensus 42 ~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~ 94 (205)
++.-...+|..+=+.+-.....-+++|..+---++..|-.+..|.|.-||-..
T Consensus 5 ls~~e~~vLDlYe~SnIrIP~DIIEdl~~~~L~te~EVmnYiEnqR~~WKLEN 57 (67)
T 2bnk_A 5 LSACEVAVLDLYEQSNIRIPSDIIEDLVNQRLQSEQEVLNYIETQRTYWKLEN 57 (67)
T ss_dssp CCSSHHHHHHHHHHTTCCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHcCCcCcHHHHHHHHHHhhhhHHHHHHHHHhhHhHHhhhh
Confidence 45556677877777788888888999987777789999999999999998763
No 260
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=29.70 E-value=25 Score=23.37 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.8
Q ss_pred HHHHHHhhCCchhhhhhhhhchHH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRRA 88 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR~ 88 (205)
..+||+.+|++...|..|..+++.
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~~ 43 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRST 43 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999987653
No 261
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=29.57 E-value=11 Score=29.32 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=30.9
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
-+..-.+.|....|-. -...+||+..|+++.-|-..|.||-.=.
T Consensus 23 Il~AA~~lf~~~G~~~-~t~~~IA~~aGvs~~tlY~~F~sKe~Ll 66 (251)
T 3npi_A 23 VLDIALSLFSELGFSD-AKLEAIAKKSGMSKRMIHYHFGDKRGLY 66 (251)
T ss_dssp HHHHHHHHHHHHHHHH-CCHHHHHHHHCCCHHHHHHHHCSHHHHH
T ss_pred HHHHHHHHHHHcCccc-cCHHHHHHHHCCCHHHHHHHcCCHHHHH
Confidence 3444555666665422 2366789999999999999999886543
No 262
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=29.54 E-value=79 Score=23.02 Aligned_cols=45 Identities=9% Similarity=0.089 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHhhc----CCCCCHHHHHHHHHhhCCchhhhhhhhhchHHH
Q psy1901 42 FTGDQLEELERAFQR----TQYPDVYTREELAQKTKLTEARVQVWFSNRRAR 89 (205)
Q Consensus 42 ~s~~q~~~Le~~F~~----~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k 89 (205)
++..+..+|-.++.. +.+|+.. +||+.+|++...|...+++--.|
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~~---~LA~~~~~s~~~v~~~L~~L~~K 78 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTPN---QLQEGMSISVEECTNRLRMFIQK 78 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCHH---HHHTTSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHHHHHHC
Confidence 567777777666653 5677775 69999999999999888754443
No 263
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=29.48 E-value=1.7e+02 Score=21.45 Aligned_cols=43 Identities=9% Similarity=0.139 Sum_probs=30.0
Q ss_pred HHHHHHHhhcCC-----CCCHHHHHHHHHhhCCchhh---hhhhh--hchHHH
Q psy1901 47 LEELERAFQRTQ-----YPDVYTREELAQKTKLTEAR---VQVWF--SNRRAR 89 (205)
Q Consensus 47 ~~~Le~~F~~~~-----~ps~~~r~~LA~~l~l~~~q---V~~WF--qNrR~k 89 (205)
...++.+|.... ..+......||+++||...+ +.-.+ .+...+
T Consensus 80 ~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~~~~ 132 (186)
T 3bci_A 80 LDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSW 132 (186)
T ss_dssp HHHHHHHHHTCCCTTSCCCCHHHHHHHHHTTCCCHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHhcCcccCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHH
Confidence 344555665543 36788899999999999988 77776 544433
No 264
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=29.39 E-value=15 Score=26.73 Aligned_cols=45 Identities=13% Similarity=0.301 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 45 DQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 45 ~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
.-+....+.|....|-.. ...+||++.|++...|-..|.||-.=.
T Consensus 14 ~Il~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~L~ 58 (196)
T 3col_A 14 KIQDAVAAIILAEGPAGV-STTKVAKRVGIAQSNVYLYFKNKQALI 58 (196)
T ss_dssp HHHHHHHHHHHHHCGGGC-CHHHHHHHHTSCHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHhcCcccC-CHHHHHHHhCCcHHHHHHHhCCHHHHH
Confidence 344555566777765333 367889999999999999999986543
No 265
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=29.22 E-value=48 Score=23.41 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhh
Q psy1901 43 TGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFS 84 (205)
Q Consensus 43 s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFq 84 (205)
+.+|...+++....-.- ......+|+..+++.+..++-|+.
T Consensus 2 ~~~~~~l~~~i~~~~~~-~p~~~~~la~~~~~~~~~~~~~l~ 42 (121)
T 2pjp_A 2 SEEQQAIWQKAEPLFGD-EPWWVRDLAKETGTDEQAMRLTLR 42 (121)
T ss_dssp CHHHHHHHHHHGGGCSS-SCEEHHHHHHHTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHH
Confidence 45555555555332221 223556899999999999999874
No 266
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=29.18 E-value=11 Score=27.71 Aligned_cols=44 Identities=11% Similarity=0.177 Sum_probs=33.2
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
-+....+.|....|-... ..+||+..|++...|-..|.||-.=.
T Consensus 16 Il~aA~~lf~~~G~~~~s-~~~Ia~~agvs~~t~Y~~F~sK~~L~ 59 (203)
T 3b81_A 16 LANKIWDIFIANGYENTT-LAFIINKLGISKGALYHYFSSKEECA 59 (203)
T ss_dssp HHHHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHcCcccCc-HHHHHHHhCCCchhHHHHcCCHHHHH
Confidence 344555667777765433 67889999999999999999986543
No 267
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=29.12 E-value=13 Score=27.23 Aligned_cols=44 Identities=9% Similarity=0.219 Sum_probs=32.5
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
+....+.|....|-... ..+||+..|+++.-|...|.||..=..
T Consensus 14 l~aA~~l~~~~G~~~~t-~~~IA~~Agvs~~tly~~F~sK~~L~~ 57 (194)
T 3dpj_A 14 VAAADELFYRQGFAQTS-FVDISAAVGISRGNFYYHFKTKDEILA 57 (194)
T ss_dssp HHHHHHHHHHHCTTTCC-HHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcCcccCC-HHHHHHHHCCChHHHHHHcCCHHHHHH
Confidence 44455557777765443 667899999999999999999875443
No 268
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=29.01 E-value=47 Score=24.23 Aligned_cols=42 Identities=29% Similarity=0.369 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHhh-------cCCCCCHHHHHHHHHhhCC--chhhhhhh
Q psy1901 41 TFTGDQLEELERAFQ-------RTQYPDVYTREELAQKTKL--TEARVQVW 82 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~-------~~~~ps~~~r~~LA~~l~l--~~~qV~~W 82 (205)
.+|.+|+..|++.|. ...+.+..+...+.+.||+ ++.+|+..
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~t~~el~~~ 52 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQH 52 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCCCHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHH
Confidence 478999999999884 2358888888888888875 45555443
No 269
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=28.99 E-value=11 Score=30.83 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=31.1
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 48 EELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 48 ~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
....+.|....|-. -...+||+..|++...|-.+|.||..=.
T Consensus 127 ~aa~~l~~~~G~~~-~T~~~IA~~AGvs~gtlY~yF~sKe~Ll 168 (311)
T 4ich_A 127 ETAWRLIARRGYHN-VRIHDIASELGTSNATIHYHFPSKKDIL 168 (311)
T ss_dssp HHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHcCCcc-CCHHHHHHHhCCCchhHHHhCCCHHHHH
Confidence 34455577766643 3467789999999999999999987543
No 270
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=28.97 E-value=62 Score=28.78 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=35.8
Q ss_pred CCCCCCHHHHHHHHHHhh-----cCCCCCHHHHHHHHHhhC--Cchhhhhhhh
Q psy1901 38 SRTTFTGDQLEELERAFQ-----RTQYPDVYTREELAQKTK--LTEARVQVWF 83 (205)
Q Consensus 38 ~R~~~s~~q~~~Le~~F~-----~~~~ps~~~r~~LA~~l~--l~~~qV~~WF 83 (205)
.+..|+.+|+..|++.|. .+.+.+..+...+.+.|| +++.+|+.-|
T Consensus 292 s~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf 344 (440)
T 3u0k_A 292 TRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMI 344 (440)
T ss_dssp BCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred hHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 366799999999999994 466899999888888887 4556665544
No 271
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=28.60 E-value=74 Score=21.88 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhh
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFS 84 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFq 84 (205)
.++.++....-....... ....++|+..+|+..+|..|-.
T Consensus 32 rWs~~~Kl~VV~~~~~g~----~s~~e~arry~Is~s~i~~W~r 71 (95)
T 2jrt_A 32 RWVASRKAAVVKAVIHGL----ITEREALDRYSLSEEEFALWRS 71 (95)
T ss_dssp CCCHHHHHHHHHHHHTTS----SCHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCC----CCHHHHHHHhCCCHHHHHHHHH
Confidence 366666554333333333 3467899999999999999974
No 272
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=28.57 E-value=1.3e+02 Score=21.52 Aligned_cols=43 Identities=9% Similarity=0.023 Sum_probs=29.8
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhh
Q psy1901 37 RSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARV 79 (205)
Q Consensus 37 r~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV 79 (205)
+++..++.+++..|-+.+.....+.......|+..+||...+|
T Consensus 2 ~~~~~lt~~e~~~l~~~~~~~~~~~~~~~~~l~~~tG~R~~E~ 44 (170)
T 1aih_A 2 TELAFLYERDIYRLLAECDNSRNPDLGLIVRICLATGARWSEA 44 (170)
T ss_dssp CCCCCCCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHCCCHHHH
T ss_pred CccccCCHHHHHHHHHHHhcccchhHHHHHHHHHHhCCcHHHH
Confidence 3456789999999988887665555555666777777655444
No 273
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=28.48 E-value=1.2e+02 Score=23.79 Aligned_cols=48 Identities=8% Similarity=0.097 Sum_probs=33.9
Q ss_pred HHHHHHHhhcCCC------CCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHH
Q psy1901 47 LEELERAFQRTQY------PDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 94 (205)
Q Consensus 47 ~~~Le~~F~~~~~------ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~ 94 (205)
....+.+|..... .+......||+.+||....+.-++.+...+.+-+.
T Consensus 105 ~~~~~aLF~~q~~~~~~~~~~~~~L~~iA~~~Gld~~~~~~~l~s~~~~~~v~~ 158 (226)
T 3f4s_A 105 FNFNKAVFNSIDSWNYYNLSDLTLLQRIAALSNLKQDAFNQCINDKKIMDKIVN 158 (226)
T ss_dssp HHHHHHHHHTGGGSCSSSTTCCHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhCHhhcccccCcHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHH
Confidence 3445556754322 26688899999999999999999987766554443
No 274
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=28.35 E-value=84 Score=21.28 Aligned_cols=43 Identities=5% Similarity=-0.049 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhh
Q psy1901 40 TTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFS 84 (205)
Q Consensus 40 ~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFq 84 (205)
.-++.+|..+|..++....- . -...+|+++++|....|..-.+
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g~~-g-i~qkeLa~~~~l~~~tvt~iLk 58 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAGNK-G-IWSRDVRYKSNLPLTEINKILK 58 (91)
T ss_dssp CCSCSSHHHHHHHHHHHCTT-C-EEHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCC-C-cCHHHHHHHHCCCHHHHHHHHH
Confidence 34789999999999974321 1 3456889999999988876553
No 275
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=28.33 E-value=24 Score=25.52 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
-+....+.|....|-.. ...+||+..|++...|-..|.||-.=..
T Consensus 13 Il~aa~~l~~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 57 (183)
T 1zk8_A 13 IVETAAEIADANGVQEV-TLASLAQTLGVRSPSLYNHVKGLQDVRK 57 (183)
T ss_dssp HHHHHHHHHHHHCGGGC-CHHHHHHHHTSCHHHHTTTCSSHHHHHH
T ss_pred HHHHHHHHHHhcCcccc-CHHHHHHHcCCCchHHHHHcCCHHHHHH
Confidence 34556666777776433 3678899999999999999999865433
No 276
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=28.21 E-value=14 Score=27.75 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=33.1
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 92 (205)
+....+.|....|-.. ...+||+..|+++.-|-..|.||-.=...
T Consensus 21 l~aA~~lf~~~G~~~~-s~~~IA~~agvs~~t~Y~~F~sKe~L~~~ 65 (221)
T 3c2b_A 21 LDQALRLLVEGGEKAL-TTSGLARAANCSKESLYKWFGDRDGLLAA 65 (221)
T ss_dssp HHHHHHHHHHHCGGGC-CHHHHHHHHTCCHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHhCCcccC-CHHHHHHHhCCCHHHHHHhCCCHHHHHHH
Confidence 4455566777776443 36788999999999999999987654443
No 277
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=28.04 E-value=14 Score=28.28 Aligned_cols=43 Identities=14% Similarity=0.226 Sum_probs=27.1
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
+..-.+.|....|-.. ...+||+..|+++.-|...|.||..=.
T Consensus 41 l~AA~~lf~~~G~~~~-s~~~IA~~AGvs~~tlY~~F~sKe~L~ 83 (237)
T 3kkd_A 41 LDAAMRLIVRDGVRAV-RHRAVAAEAQVPLSATTYYFKDIDDLI 83 (237)
T ss_dssp HHHHHHHHHHHCGGGC-CHHHHHHHHTSCTTTC-----CHHHHH
T ss_pred HHHHHHHHHhcChhhc-CHHHHHHHhCCChhHHHHHcCCHHHHH
Confidence 4444556777777433 367889999999999999999986543
No 278
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=28.02 E-value=23 Score=27.18 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=33.9
Q ss_pred CCCHHH-HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 41 TFTGDQ-LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 41 ~~s~~q-~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
..++++ +..-.+.|.... .-...+||+.+|+++.-|-..|.||-.=..
T Consensus 10 ~~~r~~Il~aA~~l~~~~G---~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~ 58 (213)
T 2g7g_A 10 RLDRERIAEAALELVDRDG---DFRMPDLARHLNVQVSSIYHHAKGRAAVVE 58 (213)
T ss_dssp -CCHHHHHHHHHHHHHHHS---SCCHHHHHHHTTSCHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcC---CCCHHHHHHHhCCCHhHHHHHcCCHHHHHH
Confidence 344443 444556676666 556788999999999999999988765443
No 279
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.71 E-value=1.1e+02 Score=18.96 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=36.0
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHH
Q psy1901 37 RSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92 (205)
Q Consensus 37 r~R~~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 92 (205)
.++..||.++-..|.++...... .. ..||...|=+..||+.=|+|-..+..+
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~-~W---~~Ia~~~gRt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPT-QW---RTIAPIIGRTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTT-CH---HHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CH---HHHhcccCcCHHHHHHHHHHHhChHhc
Confidence 34567999999999888776554 33 445556688888888877665554443
No 280
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=27.51 E-value=1.4e+02 Score=20.25 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHhh-----cCCCCCHHHHHHHHHhhC--Cchhhhhhhh
Q psy1901 41 TFTGDQLEELERAFQ-----RTQYPDVYTREELAQKTK--LTEARVQVWF 83 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~-----~~~~ps~~~r~~LA~~l~--l~~~qV~~WF 83 (205)
.++++++..|++.|. .+.+.+..+-..+...+| ++...|...|
T Consensus 4 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~ 53 (153)
T 3ox6_A 4 SLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELS 53 (153)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 578899999999984 357888888888877775 3444444443
No 281
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=27.27 E-value=19 Score=26.00 Aligned_cols=45 Identities=16% Similarity=0.344 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
-+....+.|....|-.. ...+||+..|++...+-..|.||-.=..
T Consensus 13 Il~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~L~~ 57 (188)
T 3qkx_A 13 IFSATDRLMAREGLNQL-SMLKLAKEANVAAGTIYLYFKNKDELLE 57 (188)
T ss_dssp HHHHHHHHHHHSCSTTC-CHHHHHHHHTCCHHHHHHHSSSHHHHHH
T ss_pred HHHHHHHHHHhcCcccC-CHHHHHHHhCCCcchHHHHcCCHHHHHH
Confidence 34556666888877544 4678899999999999999998875443
No 282
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=27.24 E-value=40 Score=24.76 Aligned_cols=47 Identities=15% Similarity=0.271 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
-+....+.|.+..|-.. ...+||+..|++..-+-..|.||..=...-
T Consensus 18 Il~aa~~lf~~~G~~~~-tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 64 (195)
T 2iu5_A 18 IAKAFKDLMQSNAYHQI-SVSDIMQTAKIRRQTFYNYFQNQEELLSWI 64 (195)
T ss_dssp HHHHHHHHHHHSCGGGC-CHHHHHHHHTSCGGGGGGTCSSHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCee-CHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 45556677888876543 367889999999999999999987655443
No 283
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=27.10 E-value=29 Score=23.32 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=20.2
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|-.+++
T Consensus 46 q~elA~~lgvs~~~is~~E~G~~ 68 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGRS 68 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
Confidence 46799999999999999998765
No 284
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=26.85 E-value=32 Score=21.08 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=19.8
Q ss_pred HHHHHHhhC--CchhhhhhhhhchH
Q psy1901 65 REELAQKTK--LTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~--l~~~qV~~WFqNrR 87 (205)
..+||+.+| ++...|..|..+++
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~~ 48 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGDR 48 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCCC
Confidence 467999999 99999999997754
No 285
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=26.77 E-value=42 Score=24.45 Aligned_cols=43 Identities=28% Similarity=0.393 Sum_probs=33.7
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
+....+.|....|-... ..+||+..|+++.-|-..|.||..=.
T Consensus 9 l~aA~~lf~~~G~~~~s-~~~IA~~agvsk~t~Y~~F~sK~~L~ 51 (190)
T 3vpr_A 9 LEEAAKLFTEKGYEATS-VQDLAQALGLSKAALYHHFGSKEEIL 51 (190)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHhCcccCC-HHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 45556678887775543 67889999999999999999987654
No 286
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=26.57 E-value=35 Score=25.26 Aligned_cols=43 Identities=12% Similarity=0.200 Sum_probs=33.2
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRAR 89 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k 89 (205)
-+....+.|....|-... ..+||+..|+++.-+-..|.||..=
T Consensus 15 Il~aA~~lf~~~G~~~~s-~~~Ia~~Agvskgt~Y~yF~sKe~L 57 (197)
T 2f07_A 15 ILQAAIEVISEKGLDKAS-ISDIVKKAGTAQGTFYLYFSSKNAL 57 (197)
T ss_dssp HHHHHHHHHHHHCTTTCC-HHHHHHHHTSCHHHHHHHCSSSTTH
T ss_pred HHHHHHHHHHHhCcccCC-HHHHHHHhCCCchHHHHhCCCHHHH
Confidence 355556668888775443 6788999999999999999998643
No 287
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=26.48 E-value=64 Score=22.19 Aligned_cols=19 Identities=21% Similarity=-0.071 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHHHhhCCch
Q psy1901 58 QYPDVYTREELAQKTKLTE 76 (205)
Q Consensus 58 ~~ps~~~r~~LA~~l~l~~ 76 (205)
..|+......|++.+|++.
T Consensus 52 ~~~s~~~~~kla~~lgvs~ 70 (104)
T 3trb_A 52 RSITADTALRLAKFFGTTP 70 (104)
T ss_dssp SCCCHHHHHHHHHHHTCCH
T ss_pred CCCCHHHHHHHHHHHCcCH
Confidence 4578888888888888764
No 288
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=26.38 E-value=24 Score=26.48 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=33.4
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
+..-.+.|....|- -...+||+..|+++.-|-.+|.||..=.
T Consensus 18 l~aA~~lf~~~G~~--~s~~~IA~~agvs~~tiY~~F~sK~~L~ 59 (224)
T 1t33_A 18 IAAALAQFGEYGLH--ATTRDIAALAGQNIAAITYYFGSKEDLY 59 (224)
T ss_dssp HHHHHHHHHHHGGG--SCHHHHHHHHTSCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHhcCCHHHHH
Confidence 44555668887777 5688899999999999999999986543
No 289
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=26.18 E-value=1e+02 Score=22.75 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
.+++.+..+|+-.... + ...+||..++++++.|++...|=|.|..
T Consensus 142 ~Lt~rE~~vl~~l~~g--~----s~~~Ia~~l~is~~TV~~~~~~i~~Kl~ 186 (208)
T 1yio_A 142 SLTGREQQVLQLTIRG--L----MNKQIAGELGIAEVTVKVHRHNIMQKLN 186 (208)
T ss_dssp TSCHHHHHHHHHHTTT--C----CHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHcC--C----cHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 3667777777655322 2 3467899999999999987665555543
No 290
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=25.94 E-value=37 Score=25.11 Aligned_cols=44 Identities=11% Similarity=0.093 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
-+..-.+.|....|-... ..+||+..|+++.-|-..|.||-.=.
T Consensus 12 Il~aA~~lf~~~G~~~ts-~~~IA~~aGvs~gtlY~~F~sKe~L~ 55 (197)
T 2gen_A 12 ILQAALACFSEHGVDATT-IEMIRDRSGASIGSLYHHFGNKERIH 55 (197)
T ss_dssp HHHHHHHHHHHHCTTTCC-HHHHHHHHCCCHHHHHHHTCSHHHHH
T ss_pred HHHHHHHHHHHcCcccCC-HHHHHHHHCCChHHHHHHCCCHHHHH
Confidence 344556668887775433 67889999999999999999986543
No 291
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=25.82 E-value=49 Score=23.88 Aligned_cols=44 Identities=11% Similarity=0.214 Sum_probs=33.6
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
-+....+.|....|-... ..+||++.|++...|-..|.||-.=.
T Consensus 7 Il~aa~~l~~~~G~~~~t-i~~Ia~~agvs~~t~Y~~F~sK~~L~ 50 (194)
T 3bqz_B 7 ILGVAKELFIKNGYNATT-TGEIVKLSESSKGNLYYHFKTKENLF 50 (194)
T ss_dssp HHHHHHHHHHHHTTTTCC-HHHHHHHTTCCHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHcCCccCC-HHHHHHHhCCCchhHHHhCCCHHHHH
Confidence 455666677777765443 67889999999999999999986533
No 292
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=25.80 E-value=1.1e+02 Score=18.66 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhh
Q psy1901 42 FTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWF 83 (205)
Q Consensus 42 ~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WF 83 (205)
+...+...+++.+..+ . .+.+.|+.|||+...+..+.
T Consensus 18 l~~~Er~~I~~aL~~~-g----n~~~aA~~LGIsr~tL~rkl 54 (61)
T 1g2h_A 18 IGFYEAQVLKLFYAEY-P----STRKLAQRLGVSHTAIANKL 54 (61)
T ss_dssp CSHHHHHHHHHHHHHS-C----SHHHHHHHTTSCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-C----CHHHHHHHhCCCHHHHHHHH
Confidence 5566777788888776 2 35577999999998775544
No 293
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=25.73 E-value=46 Score=24.22 Aligned_cols=46 Identities=11% Similarity=0.295 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 45 DQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 45 ~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
.-+..-.+.|....|-... ..+||+..|+++.-|-..|.||..=..
T Consensus 11 ~Il~aA~~lf~~~G~~~~t-~~~IA~~agvs~~tlY~~F~sK~~L~~ 56 (192)
T 2zcm_A 11 KIIDNAITLFSEKGYDGTT-LDDISKSVNIKKASLYYHYDNKEEIYR 56 (192)
T ss_dssp HHHHHHHHHHHHHCTTTCC-HHHHHHHTTCCHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCC-HHHHHHHhCCChHHHHHHCCCHHHHHH
Confidence 4455666778888775443 678899999999999999998865443
No 294
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=25.64 E-value=32 Score=23.59 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=20.4
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|-.+++
T Consensus 25 q~~lA~~~gis~~~i~~~e~g~~ 47 (114)
T 3op9_A 25 NHQIAELLNVQTRTVAYYMSGET 47 (114)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998765
No 295
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=25.64 E-value=45 Score=22.35 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=19.7
Q ss_pred HHHHHHHHhhCCchhhhhhhhhch
Q psy1901 63 YTREELAQKTKLTEARVQVWFSNR 86 (205)
Q Consensus 63 ~~r~~LA~~l~l~~~qV~~WFqNr 86 (205)
....+||+.+||+++.+...|+..
T Consensus 20 ~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 20 FTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 356789999999999998888643
No 296
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=25.48 E-value=45 Score=23.80 Aligned_cols=47 Identities=6% Similarity=0.194 Sum_probs=35.2
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 93 (205)
-+....+.|....|-... ..+||+..|++..-+-..|.||-.=...-
T Consensus 17 Il~aa~~l~~~~G~~~~t-v~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 63 (177)
T 3kkc_A 17 IYNAFISLLQENDYSKIT-VQDVIGLANVGRSTFYSHYESKEVLLKEL 63 (177)
T ss_dssp HHHHHHHHTTTSCTTTCC-HHHHHHHHCCCHHHHTTTCSSTHHHHHHH
T ss_pred HHHHHHHHHHhCChhHhh-HHHHHHHhCCcHhhHHHHcCCHHHHHHHH
Confidence 345566678887765444 66789999999999999999887654443
No 297
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=25.33 E-value=8.9 Score=28.88 Aligned_cols=44 Identities=14% Similarity=0.255 Sum_probs=32.3
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
+....+.|....|-.. ...+||+..|++..-|-..|.||-.=..
T Consensus 29 l~aA~~lf~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~~L~~ 72 (214)
T 2zb9_A 29 LHAVGELLLTEGTAQL-TFERVARVSGVSKTTLYKWWPSKGALAL 72 (214)
T ss_dssp HHHHHHHHHHHCGGGC-CHHHHHHHHCCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHHCCCHHHHHHHCCCHHHHHH
Confidence 3344556777776443 3678899999999999999998765443
No 298
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=25.17 E-value=2.1e+02 Score=21.07 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=32.2
Q ss_pred HHHHHhhcCC-CCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHHHH
Q psy1901 49 ELERAFQRTQ-YPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 94 (205)
Q Consensus 49 ~Le~~F~~~~-~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~ 94 (205)
.++..|.... ..+......+|+++||....+.-.+.+...+..-+.
T Consensus 93 lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~ 139 (195)
T 3hd5_A 93 VFTAIHTERKRLFDKKAMGEWAASQGVDRAKFDSVFDSFSVQTQVQR 139 (195)
T ss_dssp HHHHHHTSCCCCCSHHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHhCCCHHHHHHHHcCHHHHHHHHH
Confidence 3344444443 358888999999999999999888876665544443
No 299
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=25.14 E-value=34 Score=25.43 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=33.1
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
+..-.+.|....|-... ..+||+..|+++.-|-.+|.||-.=.
T Consensus 17 l~aA~~lf~~~G~~~~s-~~~IA~~aGvskgtlY~~F~sKe~L~ 59 (210)
T 2xdn_A 17 IEAAERAFYKRGVARTT-LADIAELAGVTRGAIYWHFNNKAELV 59 (210)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCTTHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCcccCc-HHHHHHHHCCChHHHHHHhCCHHHHH
Confidence 44455668888775544 67889999999999999999976543
No 300
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=24.90 E-value=35 Score=24.74 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=32.5
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
+....+.|....|-... ..+||+..|++...|-..|.||-.=.
T Consensus 13 l~aa~~l~~~~G~~~~t-~~~IA~~agvs~~t~Y~~F~sK~~L~ 55 (199)
T 3qbm_A 13 VAQAAALFNVSGYAGTA-ISDIMAATGLEKGGIYRHFESKEQLA 55 (199)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHhCcCcCC-HHHHHHHhCCCccHHHHhCCCHHHHH
Confidence 44555667777765443 67789999999999999999886543
No 301
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=24.69 E-value=25 Score=24.49 Aligned_cols=28 Identities=4% Similarity=-0.064 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 63 YTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 63 ~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
.-++.|+.+.|+...+++.+|.+|-.++
T Consensus 46 ~LK~~I~~k~Gip~~qQrLif~Gk~LkD 73 (93)
T 3plu_A 46 DFKKVLSLQIGTQPNKIVLQKGGSVLKD 73 (93)
T ss_dssp HHHHHHHHHHTCCGGGEEEEETTEECCT
T ss_pred HHHHHHHHHhCCCHHHEEEEeCCEEccC
Confidence 3467789999999999999998876543
No 302
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=24.42 E-value=30 Score=24.98 Aligned_cols=44 Identities=16% Similarity=0.244 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
-+....+.|....|-.. ...+||+..|+++..|-..|.||-.=.
T Consensus 15 Il~aa~~l~~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~~L~ 58 (191)
T 3on4_A 15 ILAVAEALIQKDGYNAF-SFKDIATAINIKTASIHYHFPSKEDLG 58 (191)
T ss_dssp HHHHHHHHHHHHCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHHhCcccC-CHHHHHHHhCCCcchhhhcCCCHHHHH
Confidence 34455566766665433 367889999999999999999987443
No 303
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=24.40 E-value=33 Score=23.70 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.4
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|-.+++
T Consensus 37 q~elA~~~gis~~~is~~E~G~~ 59 (114)
T 3vk0_A 37 QEELARQCGLDRTYVSAVERKRW 59 (114)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999998875
No 304
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=24.32 E-value=64 Score=24.03 Aligned_cols=25 Identities=8% Similarity=0.201 Sum_probs=21.8
Q ss_pred HHHHHHHhhCCchhhhhhhhhchHH
Q psy1901 64 TREELAQKTKLTEARVQVWFSNRRA 88 (205)
Q Consensus 64 ~r~~LA~~l~l~~~qV~~WFqNrR~ 88 (205)
...+||+.+|++...|..|..+++.
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g~~~ 46 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTRGAI 46 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHSSSC
T ss_pred CHHHHHHHhCcCHHHHHHHHhCCCC
Confidence 5678999999999999999987654
No 305
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=24.30 E-value=47 Score=23.62 Aligned_cols=45 Identities=18% Similarity=0.337 Sum_probs=33.2
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 92 (205)
+....+.|....|-. -...+||+..|++..-|-..|.||..=...
T Consensus 10 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 54 (170)
T 3egq_A 10 IEAALRLYMKKPPHE-VSIEEIAREAKVSKSLIFYHFESKQKLLEE 54 (170)
T ss_dssp HHHHHHHHTTSCGGG-CCHHHHHHHHTSCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHhcCCcc-CcHHHHHHHhCCCchhHHHHcCCHHHHHHH
Confidence 445556677777643 346788999999999999999988754433
No 306
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=24.19 E-value=44 Score=26.87 Aligned_cols=51 Identities=8% Similarity=0.076 Sum_probs=36.7
Q ss_pred CCCHHH-HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHH
Q psy1901 41 TFTGDQ-LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92 (205)
Q Consensus 41 ~~s~~q-~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 92 (205)
.+++++ +..-.+.|....|-... ..+||+.+|++..-|-..|.||-.=...
T Consensus 26 ~~tr~~Il~AA~~L~~e~G~~~~S-mr~IA~~aGVs~~tlY~hF~~K~~Ll~a 77 (267)
T 2y2z_A 26 TLSRDQIVRAAVKVADTEGVEAAS-MRRVAAELGAGTMSLYYYVPTKEDLVEL 77 (267)
T ss_dssp EECHHHHHHHHHHHHHHHCTTTCC-HHHHHHHHTCCHHHHHTTCCSHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCcccCC-HHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 455554 34555667777765443 6788999999999999999987655444
No 307
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=24.07 E-value=39 Score=25.47 Aligned_cols=45 Identities=13% Similarity=0.232 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 45 DQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 45 ~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
.-+..-.+.|....|-... ..+||+..|+++.-|-..|.||-.=.
T Consensus 13 ~Il~aA~~lf~~~Gy~~ts-~~~IA~~AGvskgtlY~~F~sKe~L~ 57 (215)
T 1ui5_A 13 TIIGAAADLFDRRGYESTT-LSEIVAHAGVTKGALYFHFAAKEDLA 57 (215)
T ss_dssp HHHHHHHHHHHHHCTTTCC-HHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHHHhCcccCC-HHHHHHHhCCCchhhHhhCCCHHHHH
Confidence 3455566678888875544 67889999999999999999887543
No 308
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=23.55 E-value=2.3e+02 Score=21.08 Aligned_cols=44 Identities=5% Similarity=0.105 Sum_probs=31.7
Q ss_pred HHHHhhcCC-CCCHHHHHHHHHhh-CCchhhhhhhhhchHHHHHHH
Q psy1901 50 LERAFQRTQ-YPDVYTREELAQKT-KLTEARVQVWFSNRRARLRKQ 93 (205)
Q Consensus 50 Le~~F~~~~-~ps~~~r~~LA~~l-~l~~~qV~~WFqNrR~k~kr~ 93 (205)
++.+|.... ..+......+|.++ ||....+.-++.+...+..-+
T Consensus 96 f~a~~~~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~v~ 141 (193)
T 3hz8_A 96 FDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARAD 141 (193)
T ss_dssp HHHHHTSCCCTTSHHHHHHHHHHCTTTTHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHhCcCCCCHHHHHHHHHHccCCCHHHHHHHHcCHHHHHHHH
Confidence 344444443 35788899999999 999999999887766554443
No 309
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=23.46 E-value=11 Score=27.54 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
+....+.|....|-. -...+||+..|+++..|-.+|.||-.=.
T Consensus 20 l~aA~~l~~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~L~ 62 (191)
T 4aci_A 20 LEGARRCFAEHGYEG-ATVRRLEEATGKSRGAIFHHFGDKENLF 62 (191)
T ss_dssp HHHHHHHHHHHHHHH-CCHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHHCCCchHHHHHCCCHHHHH
Confidence 344445566655422 2367889999999999999999886543
No 310
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=23.40 E-value=37 Score=23.07 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.2
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|-.+++
T Consensus 44 q~elA~~~gis~~~is~iE~G~~ 66 (99)
T 3g5g_A 44 QEDLAYKSNLDRTYISGIERNSR 66 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46899999999999999998764
No 311
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=23.30 E-value=43 Score=21.24 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=20.6
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|-.++.++.
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999998775
No 312
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=23.17 E-value=39 Score=25.01 Aligned_cols=43 Identities=14% Similarity=0.272 Sum_probs=32.6
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
+..-.+.|....|-... ..+||+..|+++.-|-..|.||..=.
T Consensus 17 l~aA~~lf~~~G~~~~s-~~~IA~~agvs~~t~Y~~F~sK~~L~ 59 (212)
T 2ras_A 17 VDVAQAIVEERGGAGLT-LSELAARAGISQANLSRYFETREDLM 59 (212)
T ss_dssp HHHHHHHHHHHTSSCCC-HHHHHHHHTSCHHHHTTTCSSHHHHH
T ss_pred HHHHHHHHHHhCcccCc-HHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 34445667777775543 67889999999999999999986543
No 313
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=23.08 E-value=40 Score=21.98 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.1
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~E~G~~ 52 (86)
T 3eus_A 30 QADLAERLDKPQSFVAKVETRER 52 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 35799999999999999998775
No 314
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=23.05 E-value=40 Score=23.38 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.2
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|-.+++
T Consensus 39 q~elA~~~gis~~~is~~E~G~~ 61 (111)
T 3mlf_A 39 QKELGDLFKVSSRTIQNMEKDST 61 (111)
T ss_dssp HHHHHHHHTSCHHHHHHHHHCCT
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45799999999999999998875
No 315
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=22.89 E-value=1.3e+02 Score=20.82 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHhh-----cCCCCCHHHHHHHHHhhC--Cchhhhhhhh
Q psy1901 41 TFTGDQLEELERAFQ-----RTQYPDVYTREELAQKTK--LTEARVQVWF 83 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~-----~~~~ps~~~r~~LA~~l~--l~~~qV~~WF 83 (205)
.++.+++..|.+.|. .+.+.+..+...+...+| ++...|+.+|
T Consensus 3 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~ 52 (148)
T 1exr_A 3 QLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMI 52 (148)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 367888888888874 245677777777777766 3444554444
No 316
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=22.81 E-value=1.2e+02 Score=26.71 Aligned_cols=50 Identities=14% Similarity=0.040 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
.++..++.+|...|..... ....-.+||..+|++...|+.....-+.|.|
T Consensus 375 ~L~ereR~VI~LRygL~~~-e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred hCCHHHHHHHHHHHhccCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4778888888888753211 1245678999999999999999877666666
No 317
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=22.76 E-value=14 Score=27.42 Aligned_cols=43 Identities=23% Similarity=0.436 Sum_probs=31.2
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
+....+.|....|-.. ...+||+..|+++.-|-..|.||-.=.
T Consensus 32 l~aA~~l~~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 74 (217)
T 3mvp_A 32 LQVAKDLFSDKTYFNV-TTNEIAKKADVSVGTLYAYFASKEDIL 74 (217)
T ss_dssp HHHHHHHHHHHCGGGC-CHHHHHHHHTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCcccc-CHHHHHHHhCCChhHHHHHcCCHHHHH
Confidence 3444555777775333 366789999999999999999886443
No 318
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=22.73 E-value=48 Score=24.33 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=31.4
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRA 88 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~ 88 (205)
+..-.+.|....|-.. ...+||+..|+++..|-..|.||-.
T Consensus 14 l~aA~~lf~~~G~~~~-t~~~IA~~agvs~~tlY~~F~sK~~ 54 (199)
T 2o7t_A 14 ITTTCNLYRTHHHDSL-TMENIAEQAGVGVATLYRNFPDRFT 54 (199)
T ss_dssp HHHHHHHHHHSCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHCCCccC-CHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 4455566777776443 3678899999999999999998764
No 319
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=22.73 E-value=42 Score=22.69 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=26.9
Q ss_pred HHHHHh---h--cCCCCCHHHHHHHHHhhCCchhhhhhhhh
Q psy1901 49 ELERAF---Q--RTQYPDVYTREELAQKTKLTEARVQVWFS 84 (205)
Q Consensus 49 ~Le~~F---~--~~~~ps~~~r~~LA~~l~l~~~qV~~WFq 84 (205)
.|++.| . .+.+.+..+...+...+|++..++..+|.
T Consensus 12 ~~~~~F~~~D~d~dG~Is~~el~~~l~~~~l~~~~l~~i~~ 52 (99)
T 1qjt_A 12 VYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWD 52 (99)
T ss_dssp HHHHHHHHHCCTTSSCCCSHHHHHHHHTSSSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 455555 3 34688999888888889999888877774
No 320
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=22.66 E-value=16 Score=27.40 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=32.5
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
-+....+.|....|-. -...+||+..|++..-|-..|.||-.=.
T Consensus 17 Il~aA~~l~~e~G~~~-~s~~~IA~~agvs~~t~Y~hF~~Ke~Ll 60 (198)
T 3cjd_A 17 LIDLAEAQIEAEGLAS-LRARELARQADCAVGAIYTHFQDLNALT 60 (198)
T ss_dssp HHHHHHHHHHHHCGGG-CCHHHHHHHHTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHhCChhh-cCHHHHHHHhCCCccHHHHHhCCHHHHH
Confidence 3455566677776633 3467889999999999999999886443
No 321
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=22.58 E-value=63 Score=23.68 Aligned_cols=44 Identities=7% Similarity=0.201 Sum_probs=34.1
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
-+....+.|....|-.. ...+||+..|++...+-..|.||-.=.
T Consensus 17 Il~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~~K~~L~ 60 (189)
T 3vp5_A 17 VYDACLNEFQTHSFHEA-KIMHIVKALDIPRGSFYQYFEDLKDAY 60 (189)
T ss_dssp HHHHHHHHHHHSCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHHCCcccc-cHHHHHHHhCCChHHHHHHCCCHHHHH
Confidence 34456667888887555 577899999999999999999886443
No 322
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=22.57 E-value=40 Score=21.56 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=18.3
Q ss_pred HHHHHHHhhCCchhhhhhhhh
Q psy1901 64 TREELAQKTKLTEARVQVWFS 84 (205)
Q Consensus 64 ~r~~LA~~l~l~~~qV~~WFq 84 (205)
...+||+.||++..-|-.|..
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 457889999999999999984
No 323
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=22.34 E-value=83 Score=23.79 Aligned_cols=44 Identities=16% Similarity=0.139 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
.+++.+..+|+-.... ....+||+.++++++.|+.-..+=|.|.
T Consensus 159 ~Lt~rE~~vL~~l~~g------~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL 202 (225)
T 3klo_A 159 KLTKREQQIIKLLGSG------ASNIEIADKLFVSENTVKTHLHNVFKKI 202 (225)
T ss_dssp TSCHHHHHHHHHHTTT------CCHHHHHHHTTCCHHHHHHHHHHHTTTS
T ss_pred cCCHHHHHHHHHHHcC------CCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4888888888876532 2467899999999999988776555543
No 324
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=22.31 E-value=26 Score=23.00 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=22.5
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhh
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWF 83 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WF 83 (205)
..+| .+...+.--......+||++||++.+.|+...
T Consensus 17 ~~IL-~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L 52 (77)
T 1qgp_A 17 QRIL-KFLEELGEGKATTAHDLSGKLGTPKKEINRVL 52 (77)
T ss_dssp HHHH-HHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHH
T ss_pred HHHH-HHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 4444 34444442223446789999999998876544
No 325
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=22.21 E-value=40 Score=23.17 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.3
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|..+++
T Consensus 52 q~elA~~~gis~~~is~~E~G~~ 74 (107)
T 2jvl_A 52 QAELGKEIGETAATVASYERGTA 74 (107)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998765
No 326
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=22.12 E-value=45 Score=24.54 Aligned_cols=42 Identities=19% Similarity=0.405 Sum_probs=32.7
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRAR 89 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k 89 (205)
+..-.+.|....|-... ..+||+..|+++.-|-..|.||-.=
T Consensus 18 l~aA~~lf~~~G~~~~s-~~~IA~~aGvs~~tlY~~F~sKe~L 59 (197)
T 2hyt_A 18 LATARKVFSERGYADTS-MDDLTAQASLTRGALYHHFGDKKGL 59 (197)
T ss_dssp HHHHHHHHHHHCTTTCC-HHHHHHHHTCCTTHHHHHHSSHHHH
T ss_pred HHHHHHHHHHhCcccCC-HHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 44555668888875544 6788999999999999999998643
No 327
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=21.93 E-value=46 Score=24.52 Aligned_cols=44 Identities=11% Similarity=0.268 Sum_probs=33.4
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
-+....+.|....|-... ..+||+..|+++.-+-..|.||-.=.
T Consensus 14 Il~aA~~lf~~~G~~~~t-~~~Ia~~Agvs~gt~Y~yF~sKe~L~ 57 (204)
T 3anp_C 14 IFRAAMELFRNRGFQETT-ATEIAKAAHVSRGTFFNYYPYKEAVL 57 (204)
T ss_dssp HHHHHHHHHHHHCTTTCC-HHHHHHHHTSCHHHHHHHCSSTHHHH
T ss_pred HHHHHHHHHHHcCccccc-HHHHHHHcCCchHHHHHHcCCHHHHH
Confidence 344556668887775443 67889999999999999999986433
No 328
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=21.69 E-value=43 Score=22.52 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=20.2
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|..+++
T Consensus 34 q~~lA~~~gis~~~is~~e~g~~ 56 (104)
T 3cec_A 34 TANFAEILGVSNQTIQEVINGQR 56 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCc
Confidence 57899999999999999998764
No 329
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=21.63 E-value=57 Score=24.12 Aligned_cols=45 Identities=9% Similarity=0.206 Sum_probs=33.9
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 92 (205)
+..-.+.|....|-... ..+||+..|+++.-|-..|.||-.=...
T Consensus 15 l~aA~~lf~~~G~~~~s-~~~IA~~aGvsk~tlY~~F~sKe~L~~a 59 (203)
T 3cdl_A 15 VQAAIAEFGDRGFEITS-MDRIAARAEVSKRTVYNHFPSKEELFAE 59 (203)
T ss_dssp HHHHHHHHHHHCTTTCC-HHHHHHHTTSCHHHHHTTSSSHHHHHHH
T ss_pred HHHHHHHHHHcCchhcC-HHHHHHHhCCCHHHHHHHCCCHHHHHHH
Confidence 44445568777775544 6788999999999999999988765443
No 330
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=21.50 E-value=67 Score=22.99 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=33.3
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
+..-.+.|....|-.. ...+||+..|+++..|...|.||-.=..
T Consensus 13 l~aA~~l~~~~G~~~~-s~~~IA~~agvs~~tly~~F~sK~~L~~ 56 (180)
T 2fd5_A 13 LGAATQALLERGAVEP-SVGEVMGAAGLTVGGFYAHFQSKDALML 56 (180)
T ss_dssp HHHHHHHHHHHTTTSC-CHHHHHHHTTCCGGGGGGTCSCHHHHHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCCccHHHHHCCCHHHHHH
Confidence 4455566777777543 4678899999999999999998865443
No 331
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=21.38 E-value=37 Score=24.45 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhc-hHH
Q psy1901 45 DQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSN-RRA 88 (205)
Q Consensus 45 ~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqN-rR~ 88 (205)
.-+....+.|....|-... ..+||+..|++...|-..|.| |-.
T Consensus 10 ~Il~aa~~l~~~~G~~~~t-~~~Ia~~agvs~~t~Y~~F~~sK~~ 53 (191)
T 1sgm_A 10 KILHTASRLSQLQGYHATG-LNQIVKESGAPKGSLYHFFPNGKEE 53 (191)
T ss_dssp HHHHHHHHHHHHHCTTTCC-HHHHHHHHCCCSCHHHHSTTTCHHH
T ss_pred HHHHHHHHHHHHcCccccC-HHHHHHHHCCCchhHHHHccccHHH
Confidence 3455566677777764443 667899999999999999998 653
No 332
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=21.37 E-value=48 Score=23.88 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=33.4
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
+..-.+.|....|-... ..+||+..|+++.-|-..|.||..=..
T Consensus 8 l~aA~~lf~~~Gy~~~s-~~~Ia~~agvskgtlY~~F~sKe~L~~ 51 (179)
T 2eh3_A 8 LEVSKELFFEKGYQGTS-VEEIVKRANLSKGAFYFHFKSKEELIT 51 (179)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcCCccCC-HHHHHHHhCCCcHHHHHHcCCHHHHHH
Confidence 44555668787776544 678899999999999999998865443
No 333
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=21.14 E-value=34 Score=25.58 Aligned_cols=43 Identities=9% Similarity=0.294 Sum_probs=32.7
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRAR 89 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k 89 (205)
-+....+.|....|-... ..+||+..|+++.-|-..|.||-.=
T Consensus 13 Il~aA~~lf~~~Gy~~~s-~~~IA~~AGvs~gt~Y~yF~sKe~L 55 (206)
T 1vi0_A 13 IIDAAVEVIAENGYHQSQ-VSKIAKQAGVADGTIYLYFKNKEDI 55 (206)
T ss_dssp HHHHHHHHHHHHCGGGCC-HHHHHHHHTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHhCcccCC-HHHHHHHhCCChhHHHHHcCCHHHH
Confidence 345556668777765433 6788999999999999999998643
No 334
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=21.02 E-value=57 Score=24.12 Aligned_cols=44 Identities=18% Similarity=0.342 Sum_probs=33.5
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
+..-.+.|....|-... ..+||+..|+++.-|-..|.||-.=..
T Consensus 20 l~aA~~lf~~~G~~~~s-~~~IA~~agvsk~tlY~yF~sKe~L~~ 63 (199)
T 3crj_A 20 MQATYRALREHGYADLT-IQRIADEYGKSTAAVHYYYDTKDDLLA 63 (199)
T ss_dssp HHHHHHHHHHHTTTTCC-HHHHHHHHTSCHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHcCcccCC-HHHHHHHhCCChhHHhhhcCCHHHHHH
Confidence 44455668888876554 678899999999999999998865443
No 335
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=20.92 E-value=46 Score=22.87 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.6
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|-.+++
T Consensus 44 q~~lA~~~gis~~~is~~E~g~~ 66 (117)
T 3f52_A 44 LRELAEASRVSPGYLSELERGRK 66 (117)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46899999999999999998876
No 336
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=20.91 E-value=51 Score=24.35 Aligned_cols=42 Identities=10% Similarity=0.167 Sum_probs=32.3
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRAR 89 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k 89 (205)
+..-.+.|....|-... ..+||+..|+++.-|-..|.||-.=
T Consensus 20 l~aA~~lf~~~G~~~~s-~~~IA~~agvs~~tlY~~F~sKe~L 61 (204)
T 2ibd_A 20 LDIAATLFAERGLRATT-VRDIADAAGILSGSLYHHFDSKESM 61 (204)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHTTSCHHHHHHHCSCHHHH
T ss_pred HHHHHHHHHHcCchhcC-HHHHHHHhCCCchhHHHhcCCHHHH
Confidence 44445668777775443 6788999999999999999998643
No 337
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=20.87 E-value=50 Score=24.21 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHH
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRAR 89 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k 89 (205)
-+....+.|....|-.. ...+||+..|+++.-|-..|.||-.=
T Consensus 19 Il~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~L 61 (220)
T 3lhq_A 19 ILDVALRLFSQQGVSAT-SLAEIANAAGVTRGAIYWHFKNKSDL 61 (220)
T ss_dssp HHHHHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHcCcccC-CHHHHHHHhCCCceeehhhcCCHHHH
Confidence 34455666777776543 36788999999999999999988643
No 338
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=20.81 E-value=50 Score=22.86 Aligned_cols=20 Identities=5% Similarity=0.109 Sum_probs=17.4
Q ss_pred HHHHHHhhCCchhhhhhhhh
Q psy1901 65 REELAQKTKLTEARVQVWFS 84 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFq 84 (205)
+.++|+.+|++.+.|+.|-.
T Consensus 5 i~e~A~~~gvs~~tLR~ye~ 24 (109)
T 1r8d_A 5 VKQVAEISGVSIRTLHHYDN 24 (109)
T ss_dssp HHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 56889999999999999954
No 339
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=20.71 E-value=46 Score=22.71 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=19.7
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|..+++
T Consensus 27 q~~lA~~~gis~~~is~~e~g~~ 49 (113)
T 2eby_A 27 INELAELLHVHRNSVSALINNNR 49 (113)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998765
No 340
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=20.57 E-value=50 Score=22.83 Aligned_cols=20 Identities=10% Similarity=0.019 Sum_probs=17.4
Q ss_pred HHHHHHhhCCchhhhhhhhh
Q psy1901 65 REELAQKTKLTEARVQVWFS 84 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFq 84 (205)
+.++|+.+|++.+.|+.|-.
T Consensus 4 i~e~A~~~gvs~~tLR~ye~ 23 (108)
T 2vz4_A 4 VGQVAGFAGVTVRTLHHYDD 23 (108)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 56899999999999999953
No 341
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=20.49 E-value=41 Score=22.46 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=22.4
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhh
Q psy1901 46 QLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWF 83 (205)
Q Consensus 46 q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WF 83 (205)
+..+| +++..+.--......+||++||++.+.|+..+
T Consensus 12 ~~~IL-~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L 48 (81)
T 1qbj_A 12 EQRIL-KFLEELGEGKATTAHDLSGKLGTPKKEINRVL 48 (81)
T ss_dssp HHHHH-HHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHH-HHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 33445 34444441122345689999999999886654
No 342
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=20.46 E-value=2.8e+02 Score=20.91 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=30.7
Q ss_pred HHHHhhcCC-----CCCHHHHHHHHHh-hCCchhhhhhhhhchHHHHHH
Q psy1901 50 LERAFQRTQ-----YPDVYTREELAQK-TKLTEARVQVWFSNRRARLRK 92 (205)
Q Consensus 50 Le~~F~~~~-----~ps~~~r~~LA~~-l~l~~~qV~~WFqNrR~k~kr 92 (205)
.+.+|.... ..+......||.+ +||....+.-.+.+...+.+-
T Consensus 101 ~~aLf~~~~~~~~~~~~~~~L~~~a~~~~Gld~~~~~~~l~s~~~~~~v 149 (202)
T 3gha_A 101 HEKLFEKQPDTEQEWVTPGLLGDLAKSTTKIKPETLKENLDKETFASQV 149 (202)
T ss_dssp HHHHHHHCCSSSSCCCCHHHHHHHHHHHSSSCHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHhCccccccccCHHHHHHHHHHhcCCCHHHHHHHHhChHHHHHH
Confidence 344564432 3677889999999 999999998888766544443
No 343
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=20.29 E-value=46 Score=22.34 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=19.3
Q ss_pred HHHHHHhhCCchhhhhhhhhc
Q psy1901 65 REELAQKTKLTEARVQVWFSN 85 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqN 85 (205)
..+||+.+|++...|..|..+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 17 LSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 468999999999999999987
No 344
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=20.27 E-value=50 Score=24.43 Aligned_cols=44 Identities=18% Similarity=0.397 Sum_probs=33.2
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
+..-.+.|....|-... ..+||+..|+++.-|-..|.||..=..
T Consensus 18 l~aA~~lf~~~Gy~~ts-~~~IA~~agvs~gtlY~yF~sKe~L~~ 61 (205)
T 1rkt_A 18 LEAAKTVFKRKGFELTT-MKDVVEESGFSRGGVYLYFSSTEEMFR 61 (205)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTSCHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHcCcccCC-HHHHHHHHCCCcchhhhhCCCHHHHHH
Confidence 44445568888875544 678899999999999999998875443
No 345
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=20.22 E-value=44 Score=23.33 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=20.5
Q ss_pred HHHHHHhhCCchhhhhhhhhchH
Q psy1901 65 REELAQKTKLTEARVQVWFSNRR 87 (205)
Q Consensus 65 r~~LA~~l~l~~~qV~~WFqNrR 87 (205)
..+||+.+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~is~~E~g~~ 50 (126)
T 3ivp_A 28 REQVGAMIEIDPRYLTNIENKGQ 50 (126)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 46899999999999999998875
No 346
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=20.17 E-value=15 Score=27.53 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=31.6
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHH
Q psy1901 48 EELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90 (205)
Q Consensus 48 ~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 90 (205)
..-.+.|....|-... ..+||+..|+++.-|-..|.||-.=.
T Consensus 19 ~aA~~lf~~~G~~~~s-~~~IA~~aGvsk~tlY~hF~sKe~L~ 60 (200)
T 2hyj_A 19 GRAAEIASEEGLDGIT-IGRLAEELEMSKSGVHKHFGTKETLQ 60 (200)
T ss_dssp HHHHHHHHHHCGGGCC-HHHHHHHHTCCHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHcCcccCC-HHHHHHHhCCChHHHHHHcCCHHHHH
Confidence 3345557777765433 67889999999999999999876543
No 347
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Probab=20.16 E-value=50 Score=20.54 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=19.2
Q ss_pred CCCCCHHHHHHHHHhhC----Cchhhhhh
Q psy1901 57 TQYPDVYTREELAQKTK----LTEARVQV 81 (205)
Q Consensus 57 ~~~ps~~~r~~LA~~l~----l~~~qV~~ 81 (205)
+.+.+..+...+...+| ++..+|+.
T Consensus 21 ~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 49 (83)
T 1yx7_A 21 DGYVTALELQTFMVTLDAYKALSKDKVKE 49 (83)
T ss_dssp SSSCSHHHHHHHHHHHTTCTTTTTTTTHH
T ss_pred CCcCcHHHHHHHHHHHccccCCCHHHHHH
Confidence 46889988888888877 66666666
No 348
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=20.13 E-value=1.1e+02 Score=26.74 Aligned_cols=50 Identities=14% Similarity=0.032 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 41 TFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 41 ~~s~~q~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
.++..++.+|...|..... ....-.+||..+|++...|+.+...-+.|.|
T Consensus 360 ~L~~rer~Vl~lr~~L~~~-e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLIDG-REHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SSCHHHHHHHHHHHHTTCC------CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4778888888887753211 2345678999999999999999876666666
No 349
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=20.01 E-value=48 Score=24.78 Aligned_cols=44 Identities=14% Similarity=0.202 Sum_probs=33.5
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhCCchhhhhhhhhchHHHHH
Q psy1901 47 LEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91 (205)
Q Consensus 47 ~~~Le~~F~~~~~ps~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 91 (205)
+....+.|....|-.. ...+||+..|+++.-|-.+|.||..=..
T Consensus 28 l~AA~~lf~e~G~~~~-s~~~IA~~AGVsk~tlY~~F~sKe~L~~ 71 (207)
T 3bjb_A 28 LEAAIELATEKELARV-QMHEVAKRAGVAIGTLYRYFPSKTHLFV 71 (207)
T ss_dssp HHHHHHHHHHSCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHhCCCHHHHHHHCCCHHHHHH
Confidence 4555666888887543 3678899999999999999998765443
Done!