RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1901
(205 letters)
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 91.4 bits (227), Expect = 3e-25
Identities = 35/63 (55%), Positives = 48/63 (76%)
Query: 36 RRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLN 95
+R+RT+FT +Q+E LE+ F+RT YPDV+ RE LA K L EAR+QVWFSNRRA+ R++
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 61
Query: 96 SQQ 98
+
Sbjct: 62 LRN 64
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 90.3 bits (224), Expect = 1e-24
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 33 RKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92
R R+ R +T Q ELE+ F Y R E+A+ LTE +V++WF NRR +++K
Sbjct: 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 70
Query: 93 QLNSQQ 98
+
Sbjct: 71 INKDRA 76
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 88.0 bits (218), Expect = 6e-24
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 34 KQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93
K R RT QL L + PD +E+L + T L+ ++VWF N+R + +K+
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 86.0 bits (213), Expect = 3e-23
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 36 RRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92
+ + F+ DQ ELE+ F+ +Y R+ LA+ +L+E +V+ WF NRRA+ R+
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 85.2 bits (211), Expect = 5e-23
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 39 RTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93
R T+T Q ELE+ F +Y R E+A LTE ++++WF NRR + +K+
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 55
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 84.6 bits (209), Expect = 1e-22
Identities = 50/60 (83%), Positives = 56/60 (93%)
Query: 34 KQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93
KQRRSRTTF+ QL+ELERAF+RTQYPD+YTREELAQ+T LTEAR+QVWF NRRARLRKQ
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 60
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 84.2 bits (208), Expect = 1e-22
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 36 RRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92
R+ R ++ QL ELER + ++ R +++ T L+E ++ +WF NRR + +K
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 83.1 bits (205), Expect = 4e-22
Identities = 38/59 (64%), Positives = 46/59 (77%)
Query: 35 QRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93
QRR RT FT QL++LE FQR +YPD+ TREE+A T LTEARV+VWF NRRA+ RK+
Sbjct: 1 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 59
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 81.1 bits (200), Expect = 2e-21
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 37 RSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93
R RT FT DQL LE+ F + Y R ELA + L E+ ++VWF NRR + ++Q
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 57
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 82.0 bits (202), Expect = 2e-21
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 15/79 (18%)
Query: 36 RRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQK---------------TKLTEARVQ 80
R SR T+ + L +E F QYPD REE+A ++T +V
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVY 60
Query: 81 VWFSNRRARLRKQLNSQQL 99
WF+NRR ++++ N +
Sbjct: 61 NWFANRRKEIKRRANIAAI 79
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 80.0 bits (197), Expect = 5e-21
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 36 RRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92
R+ RT FT QL LER F++ QY + R E + LTE +V++WF NRRA+ ++
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 79.1 bits (195), Expect = 1e-20
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 37 RSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRAR 89
R RT F+ +QL L+R F +Y R++L+ + L EA++++WF N RA+
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 78.8 bits (194), Expect = 2e-20
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 36 RRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLN 95
RR+RTTFT Q+ ELE+ F + +Y +L+ K L A+V++WF NRR R + Q +
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 61
Query: 96 SQQ 98
+
Sbjct: 62 QHK 64
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 78.4 bits (193), Expect = 3e-20
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 35 QRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 94
+R+ R F+ Q+ ELER F++ +Y RE LA LT +V++WF N R ++++Q
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61
Query: 95 NSQ 97
+
Sbjct: 62 KDK 64
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 77.6 bits (191), Expect = 5e-20
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 37 RSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93
+ RTT + + LER F P +A++ L + V+VWF NRR R ++
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 57
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 77.4 bits (190), Expect = 9e-20
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 31 LKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90
L + ++R RT+ LE F + P + +A + L + V+VWF NRR +
Sbjct: 4 LVQARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKG 63
Query: 91 RKQ 93
++
Sbjct: 64 KRS 66
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 77.3 bits (190), Expect = 1e-19
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 25 SEPGIPLKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFS 84
++ P RT FT QL ELE+ F +Y R E+A +L E +V++WF
Sbjct: 17 AKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQ 76
Query: 85 NRRARLRKQ 93
NRR + +K+
Sbjct: 77 NRRMKQKKR 85
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 76.2 bits (187), Expect = 2e-19
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 36 RRSRTTFTGDQLEELERAFQRT-QYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93
T T DQ+E LE F + ++PD T +A + LTE + Q WF R A R+
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 75.1 bits (184), Expect = 8e-19
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 31 LKRKQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARL 90
L K+R+ R FT Q ELER F++ +Y RE LA +LT +V++WF N R +
Sbjct: 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKT 64
Query: 91 RKQLNSQQLN 100
++ N +
Sbjct: 65 KRAQNEKGYE 74
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 74.1 bits (182), Expect = 8e-19
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 39 RTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRR 87
R FT Q L F+ + P + ++Q+ L + V +F N R
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 74.6 bits (183), Expect = 1e-18
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 36 RRSRTTFTGDQLEELERAF---QRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92
RR R F E L F YP +EELA+K +T ++V WF N+R R +K
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 61
Query: 93 QLNSQQ 98
+ Q
Sbjct: 62 NIGKFQ 67
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 73.8 bits (181), Expect = 1e-18
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 39 RTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91
+++ + LE+ F+R Q + +EE+A+K +T +V+VWF N+R R +
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 73.2 bits (180), Expect = 3e-18
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 36 RRSRTTFTGDQLEELERAFQRTQ---YPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92
+ R + + YP ++++A +T LT +V WF N R R+ +
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 69.0 bits (169), Expect = 9e-17
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 36 RRSRTTFTGDQLEELERAFQRTQ---YPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92
R R FT + + LE F + Y D E L + T L+ +++ W SNRR + +
Sbjct: 1 RGHR--FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 67.8 bits (166), Expect = 2e-16
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 43 TGDQLEELERAFQR-TQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92
T LE+ F T++PD E L+++ +Q WF RR + +
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 68.2 bits (166), Expect = 3e-16
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 34 KQRRSRTTFTGDQLEELERAFQRT-QYPDVYTREELAQKTKLTEARVQVWFSNRRARLRK 92
RSRT + + L L+ YPD L+ + L + + +F N+R ++
Sbjct: 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65
Query: 93 QLNS 96
S
Sbjct: 66 SGPS 69
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 67.3 bits (164), Expect = 4e-16
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 39 RTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQ 93
RT+ + LE++F Q P +A++ + + ++VWFSNRR + ++
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 56
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 66.7 bits (163), Expect = 6e-16
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 37 RSRTTFTGDQLEELERAFQR-TQYPDVYTREELAQKTKLTEARVQVWFSNRRARLR 91
+ + + LE+ F T+YPD + L+++ + ++Q WF +RR + +
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 66.6 bits (162), Expect = 1e-15
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 16 SSGDESDTESEPGIPLKRKQRRSRTTFTGDQLEELERAFQR----TQYPDVYTREELAQK 71
SSG S G +R RT FT +Q E++ +R Q D E+ +
Sbjct: 2 SSGSSGSNPSSSG----GTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAE 57
Query: 72 TKLTEARVQVWFSNRRARLRKQ 93
T + +++W N +
Sbjct: 58 TGVRRQVLKIWMHNNKNSGPSS 79
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 64.4 bits (156), Expect = 1e-14
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 21/76 (27%)
Query: 39 RTTFTGDQLEELERAFQRTQYPDVYTREELAQKT---------------------KLTEA 77
R + + L +A++R + P RE L ++ +TE
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 78 RVQVWFSNRRARLRKQ 93
RV WF+NRR +
Sbjct: 61 RVYNWFANRRKEEAFR 76
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 59.4 bits (143), Expect = 8e-13
Identities = 14/71 (19%), Positives = 29/71 (40%)
Query: 36 RRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLN 95
+ T +QL L+ +F + L +TKLT + WF+ ++ +
Sbjct: 5 PQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 64
Query: 96 SQQLNAFNSMS 106
+++ N+ S
Sbjct: 65 KMEIDESNAGS 75
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 51.7 bits (123), Expect = 6e-10
Identities = 15/63 (23%), Positives = 24/63 (38%)
Query: 36 RRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLN 95
S T +QL L+ F + Q+ ++L Q T L + WF + R L+
Sbjct: 4 GSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63
Query: 96 SQQ 98
Sbjct: 64 KWF 66
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA)
{Aquifex aeolicus [TaxId: 63363]}
Length = 71
Score = 34.8 bits (80), Expect = 6e-04
Identities = 11/52 (21%), Positives = 26/52 (50%)
Query: 45 DQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNS 96
+L E E+ + + + +E+A+ + + +RV + RLR+ L++
Sbjct: 20 SKLPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAKALERLREMLSN 71
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia
coli [TaxId: 562]}
Length = 68
Score = 31.9 bits (73), Expect = 0.007
Identities = 9/50 (18%), Positives = 17/50 (34%)
Query: 45 DQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQL 94
+ L E R + D + EE+A V+ R + ++
Sbjct: 17 ESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 66
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli
[TaxId: 562]}
Length = 68
Score = 27.4 bits (61), Expect = 0.29
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 45 DQLEELERAFQRTQY----PDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNSQQLN 100
L E R ++ YT EE+ ++ +T R++ + +LR S+ L
Sbjct: 4 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLR 63
Query: 101 AF 102
+F
Sbjct: 64 SF 65
>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting
protein {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 178
Score = 27.5 bits (60), Expect = 0.88
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 34 KQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQ 70
+Q ++T FT +L+ L R F+ V E Q
Sbjct: 2 EQLEAQTNFTKRELQVLYRGFKNECPSGVVNEETFKQ 38
>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 81
Score = 26.1 bits (57), Expect = 1.2
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 35 QRRSRTTFTGDQLEELERAFQ 55
Q +R + + + E + AF
Sbjct: 1 QAEARAFLSEEMIAEFKAAFD 21
>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 162
Score = 26.8 bits (58), Expect = 1.6
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 31 LKRKQRRSRTTFTGDQLEELERAFQ 55
+ +Q +R + + + E + AF
Sbjct: 3 MTDQQAEARAFLSEEMIAEFKAAFD 27
>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId:
9913]}
Length = 181
Score = 26.3 bits (57), Expect = 2.1
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 34 KQRRSRTTFTGDQLEELERAFQRTQYPDVYTREELAQ 70
+ T FT +++E + F R + EE +
Sbjct: 10 QDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKK 46
>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 165
Score = 26.2 bits (56), Expect = 2.2
Identities = 4/17 (23%), Positives = 11/17 (64%)
Query: 40 TTFTGDQLEELERAFQR 56
+ F D+++ L + F++
Sbjct: 8 SHFDADEIKRLGKRFKK 24
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus
pyogenes [TaxId: 1314]}
Length = 106
Score = 25.2 bits (55), Expect = 3.3
Identities = 9/58 (15%), Positives = 18/58 (31%)
Query: 42 FTGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNSQQL 99
F L + + + Y D Y+ E+A + ++ V L +
Sbjct: 12 FYAALLTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMKLHM 69
>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 187
Score = 25.6 bits (55), Expect = 3.9
Identities = 4/35 (11%), Positives = 13/35 (37%)
Query: 34 KQRRSRTTFTGDQLEELERAFQRTQYPDVYTREEL 68
++ +T FT ++++ + F +
Sbjct: 11 EELTRKTYFTEKEVQQWYKGFIKDCPSGQLDAAGF 45
>d1vkia_ d.116.1.1 (A:) Hypothetical protein Atu3699
{Agrobacterium tumefaciens, strain C58 [TaxId: 358]}
Length = 165
Score = 25.4 bits (55), Expect = 4.2
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 38 SRTTFTG--DQLEELERAFQRTQYPDVYTREELAQ 70
SR T T + L+ L + Q+ V+T E
Sbjct: 1 SRKTATELFEFLDGLGISHTTKQHEPVFTVAESQS 35
>d3e9va1 d.370.1.1 (A:9-128) NGF-inducible anti-proliferative
protein PC3 (BTG2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 24.3 bits (53), Expect = 7.1
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 74 LTEARVQVWFSNRRARLRKQLNSQQLNAFNS---MSLHHQYADS 114
L E V F + R R ++ Q+L F+ +L Y
Sbjct: 3 LPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHH 46
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 24.3 bits (52), Expect = 8.5
Identities = 7/58 (12%), Positives = 22/58 (37%)
Query: 43 TGDQLEELERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNSQQLN 100
+++E++ +++ + + +V+ R L+++L Q N
Sbjct: 67 IQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHAN 124
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.121 0.363
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 720,814
Number of extensions: 28658
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 47
Length of query: 205
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,295,466
Effective search space: 160637784
Effective search space used: 160637784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.6 bits)