Query psy1904
Match_columns 163
No_of_seqs 196 out of 1518
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 19:14:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.9 1.4E-24 4.8E-29 136.3 4.5 67 95-161 14-80 (80)
2 2cra_A Homeobox protein HOX-B1 99.9 6.2E-24 2.1E-28 130.1 3.7 65 97-161 6-70 (70)
3 2da3_A Alpha-fetoprotein enhan 99.9 4.8E-24 1.6E-28 134.0 3.2 67 95-161 14-80 (80)
4 2xsd_C POU domain, class 3, tr 99.9 2.3E-23 7.9E-28 147.2 6.1 68 95-162 96-163 (164)
5 1wh5_A ZF-HD homeobox family p 99.9 1.9E-23 6.5E-28 130.8 4.6 60 96-155 15-78 (80)
6 2djn_A Homeobox protein DLX-5; 99.9 2.1E-23 7.3E-28 127.7 4.3 65 97-161 6-70 (70)
7 1wh7_A ZF-HD homeobox family p 99.9 2.1E-23 7.3E-28 130.4 4.4 60 95-155 14-78 (80)
8 2kt0_A Nanog, homeobox protein 99.9 3.9E-23 1.3E-27 130.9 5.0 65 94-158 18-82 (84)
9 1fjl_A Paired protein; DNA-bin 99.9 2.1E-24 7.2E-29 135.8 -1.0 71 90-160 10-80 (81)
10 2da2_A Alpha-fetoprotein enhan 99.9 1.9E-23 6.4E-28 128.0 3.0 66 96-161 5-70 (70)
11 2d5v_A Hepatocyte nuclear fact 99.9 5.6E-23 1.9E-27 145.6 4.5 143 2-162 18-161 (164)
12 2dmu_A Homeobox protein goosec 99.9 2.5E-23 8.6E-28 127.4 2.3 65 97-161 6-70 (70)
13 2vi6_A Homeobox protein nanog; 99.9 4.4E-23 1.5E-27 123.4 2.1 60 97-156 2-61 (62)
14 2da1_A Alpha-fetoprotein enhan 99.9 4.3E-23 1.5E-27 126.4 1.8 65 96-160 5-69 (70)
15 2hdd_A Protein (engrailed home 99.9 4.5E-23 1.5E-27 123.0 1.5 58 98-155 3-60 (61)
16 1ic8_A Hepatocyte nuclear fact 99.9 5.8E-23 2E-27 148.1 1.8 127 2-155 40-193 (194)
17 1bw5_A ISL-1HD, insulin gene e 99.9 1.5E-22 5E-27 122.6 3.1 62 97-158 2-63 (66)
18 2e1o_A Homeobox protein PRH; D 99.9 6.9E-23 2.4E-27 125.4 1.7 65 97-161 6-70 (70)
19 2l7z_A Homeobox protein HOX-A1 99.9 1.5E-22 5.3E-27 124.8 3.0 65 96-160 5-69 (73)
20 2h1k_A IPF-1, pancreatic and d 99.9 7.4E-23 2.5E-27 122.8 1.3 59 98-156 3-61 (63)
21 1e3o_C Octamer-binding transcr 99.9 6.5E-22 2.2E-26 139.4 6.4 62 95-156 98-159 (160)
22 1nk2_P Homeobox protein VND; h 99.9 1E-22 3.4E-27 126.9 1.8 62 95-156 6-67 (77)
23 1ig7_A Homeotic protein MSX-1; 99.9 1E-22 3.5E-27 120.2 1.6 57 99-155 1-57 (58)
24 2dms_A Homeobox protein OTX2; 99.8 1.9E-22 6.4E-27 126.6 2.8 64 96-159 5-68 (80)
25 1ahd_P Antennapedia protein mu 99.8 6E-23 2E-27 125.0 0.5 64 98-161 2-65 (68)
26 1au7_A Protein PIT-1, GHF-1; c 99.8 1.3E-21 4.6E-26 135.8 7.2 62 95-156 84-145 (146)
27 2m0c_A Homeobox protein arista 99.8 2.4E-22 8.3E-27 124.6 3.1 65 95-159 6-70 (75)
28 1jgg_A Segmentation protein EV 99.8 1.1E-22 3.8E-27 120.8 1.5 58 99-156 2-59 (60)
29 1puf_A HOX-1.7, homeobox prote 99.8 1.7E-22 5.8E-27 125.9 2.3 62 95-156 10-71 (77)
30 2cue_A Paired box protein PAX6 99.8 2.4E-22 8E-27 126.1 2.4 60 97-156 6-65 (80)
31 2cqx_A LAG1 longevity assuranc 99.8 1.5E-22 5.3E-27 124.2 1.2 63 99-161 9-72 (72)
32 1zq3_P PRD-4, homeotic bicoid 99.8 2.9E-22 9.8E-27 121.9 2.3 59 98-156 2-60 (68)
33 1b8i_A Ultrabithorax, protein 99.8 3.4E-22 1.2E-26 125.6 2.5 61 97-157 19-79 (81)
34 2r5y_A Homeotic protein sex co 99.8 4.6E-22 1.6E-26 127.0 3.2 62 96-157 26-87 (88)
35 1ftt_A TTF-1 HD, thyroid trans 99.8 3E-22 1E-26 121.8 2.0 62 98-159 2-63 (68)
36 3rkq_A Homeobox protein NKX-2. 99.8 5.5E-22 1.9E-26 117.1 2.8 57 98-154 2-58 (58)
37 3a01_A Homeodomain-containing 99.8 3.5E-22 1.2E-26 128.7 2.1 62 95-156 14-75 (93)
38 1akh_A Protein (mating-type pr 99.8 3E-22 1E-26 119.3 1.6 59 96-154 3-61 (61)
39 2k40_A Homeobox expressed in E 99.8 7.1E-22 2.4E-26 119.9 3.0 60 99-158 2-61 (67)
40 1yz8_P Pituitary homeobox 2; D 99.8 1.3E-22 4.6E-27 123.4 -0.4 63 97-159 2-64 (68)
41 1x2m_A LAG1 longevity assuranc 99.8 8E-22 2.7E-26 117.4 2.7 55 107-161 9-64 (64)
42 2da4_A Hypothetical protein DK 99.8 2.3E-22 7.9E-27 126.2 0.3 61 96-156 6-70 (80)
43 2dmq_A LIM/homeobox protein LH 99.8 5.2E-22 1.8E-26 124.6 1.6 61 97-157 6-66 (80)
44 1b72_A Protein (homeobox prote 99.8 4.3E-22 1.5E-26 129.3 1.2 65 96-160 32-96 (97)
45 3a02_A Homeobox protein arista 99.8 5.3E-22 1.8E-26 117.9 1.4 57 101-157 2-58 (60)
46 2ecc_A Homeobox and leucine zi 99.8 7.4E-22 2.5E-26 121.3 2.0 58 100-157 5-62 (76)
47 3nar_A ZHX1, zinc fingers and 99.8 9.6E-22 3.3E-26 127.4 2.2 63 95-157 22-84 (96)
48 3a03_A T-cell leukemia homeobo 99.8 4.1E-22 1.4E-26 116.7 0.2 54 103-156 2-55 (56)
49 1du6_A PBX1, homeobox protein 99.8 3E-21 1E-25 116.1 3.8 59 98-156 3-64 (64)
50 2dn0_A Zinc fingers and homeob 99.8 2.1E-21 7.2E-26 120.6 3.0 61 99-159 9-69 (76)
51 2ly9_A Zinc fingers and homeob 99.8 2.5E-21 8.7E-26 119.7 3.2 62 98-159 6-67 (74)
52 2h8r_A Hepatocyte nuclear fact 99.8 9E-21 3.1E-25 138.1 6.3 61 93-153 137-218 (221)
53 1uhs_A HOP, homeodomain only p 99.8 1.9E-21 6.3E-26 119.7 2.1 59 99-157 2-61 (72)
54 1x2n_A Homeobox protein pknox1 99.8 2.7E-21 9.2E-26 119.2 2.5 65 96-160 5-72 (73)
55 2hi3_A Homeodomain-only protei 99.8 2.5E-21 8.5E-26 119.4 2.1 59 99-157 3-62 (73)
56 2da5_A Zinc fingers and homeob 99.8 4.6E-21 1.6E-25 118.7 2.9 60 100-159 9-68 (75)
57 3l1p_A POU domain, class 5, tr 99.8 9.1E-21 3.1E-25 132.9 4.7 61 96-156 94-154 (155)
58 3d1n_I POU domain, class 6, tr 99.8 2E-21 6.7E-26 135.8 1.0 60 96-155 91-150 (151)
59 1wi3_A DNA-binding protein SAT 99.8 7E-21 2.4E-25 112.8 3.0 65 96-160 5-70 (71)
60 1puf_B PRE-B-cell leukemia tra 99.8 9.5E-21 3.2E-25 116.8 3.2 62 99-160 2-66 (73)
61 1lfb_A Liver transcription fac 99.8 1.4E-20 4.7E-25 122.0 2.9 63 95-157 6-89 (99)
62 1k61_A Mating-type protein alp 99.8 1.5E-20 5E-25 111.6 2.0 55 102-156 2-59 (60)
63 2cuf_A FLJ21616 protein; homeo 99.8 8.2E-21 2.8E-25 122.8 0.9 62 96-157 5-81 (95)
64 3nau_A Zinc fingers and homeob 99.8 7.9E-21 2.7E-25 112.9 0.7 50 106-155 12-61 (66)
65 2l9r_A Homeobox protein NKX-3. 99.8 3.1E-20 1E-24 112.7 2.9 57 103-159 9-65 (69)
66 2da6_A Hepatocyte nuclear fact 99.8 2.2E-20 7.7E-25 120.6 2.4 60 96-155 4-84 (102)
67 1b72_B Protein (PBX1); homeodo 99.8 2.1E-20 7.1E-25 119.1 2.1 60 99-158 2-64 (87)
68 2ecb_A Zinc fingers and homeob 99.8 2.6E-20 9E-25 118.2 1.9 53 104-156 17-69 (89)
69 2e19_A Transcription factor 8; 99.8 9.4E-20 3.2E-24 109.2 3.8 54 103-156 8-61 (64)
70 1mnm_C Protein (MAT alpha-2 tr 99.8 5.6E-20 1.9E-24 117.0 2.3 59 97-155 26-87 (87)
71 1le8_B Mating-type protein alp 99.8 6.6E-20 2.3E-24 115.6 2.5 59 100-158 4-65 (83)
72 2dmp_A Zinc fingers and homeob 99.8 8.7E-20 3E-24 116.5 2.8 54 104-157 19-72 (89)
73 2dmn_A Homeobox protein TGIF2L 99.8 5.2E-20 1.8E-24 116.0 1.8 61 97-157 6-69 (83)
74 3k2a_A Homeobox protein MEIS2; 99.7 2.9E-18 9.9E-23 103.7 2.0 57 104-160 4-63 (67)
75 2da7_A Zinc finger homeobox pr 99.5 1.7E-15 5.9E-20 90.3 1.1 47 107-153 14-60 (71)
76 2lk2_A Homeobox protein TGIF1; 99.5 1.8E-15 6.1E-20 95.3 0.2 54 103-156 10-66 (89)
77 1mh3_A Maltose binding-A1 home 99.5 8.1E-15 2.8E-19 116.7 1.5 58 97-154 364-421 (421)
78 2nzz_A Penetratin conjugated G 99.0 2.6E-11 9E-16 63.5 0.1 17 140-156 1-17 (37)
79 1k78_A Paired box protein PAX5 98.9 2.1E-09 7.1E-14 74.1 7.3 75 3-77 46-120 (149)
80 1pdn_C Protein (PRD paired); p 98.9 1.1E-09 3.9E-14 73.0 5.5 75 3-77 31-105 (128)
81 2k27_A Paired box protein PAX- 98.8 3.8E-09 1.3E-13 73.6 5.4 75 3-77 39-113 (159)
82 1u78_A TC3 transposase, transp 98.4 6E-07 2E-11 60.7 6.0 68 3-75 20-87 (141)
83 1tc3_C Protein (TC3 transposas 98.0 2.2E-06 7.6E-11 47.2 1.9 32 3-34 19-50 (51)
84 3hot_A Transposable element ma 97.7 9.3E-05 3.2E-09 57.1 6.6 69 2-75 19-96 (345)
85 2jn6_A Protein CGL2762, transp 97.4 0.00016 5.6E-09 45.7 3.9 30 5-34 23-52 (97)
86 2w7n_A TRFB transcriptional re 97.2 0.00031 1.1E-08 45.0 3.8 30 3-32 32-61 (101)
87 1jko_C HIN recombinase, DNA-in 97.2 7.9E-05 2.7E-09 41.1 0.5 27 3-29 19-45 (52)
88 2x48_A CAG38821; archeal virus 97.0 0.00023 7.8E-09 40.1 1.5 26 3-28 29-54 (55)
89 2glo_A Brinker CG9653-PA; prot 96.9 0.00039 1.3E-08 39.9 2.1 30 4-33 20-53 (59)
90 2elh_A CG11849-PA, LD40883P; s 96.9 0.00065 2.2E-08 42.2 3.0 29 4-32 37-65 (87)
91 2pjp_A Selenocysteine-specific 96.9 0.00016 5.6E-09 47.8 0.2 72 4-75 19-90 (121)
92 1uxc_A FRUR (1-57), fructose r 96.7 0.0011 3.8E-08 38.9 2.6 22 6-27 1-22 (65)
93 2rn7_A IS629 ORFA; helix, all 96.6 0.00084 2.9E-08 43.2 1.8 31 5-35 30-60 (108)
94 3jth_A Transcription activator 96.5 0.0022 7.5E-08 40.3 3.3 42 1-42 32-73 (98)
95 1hlv_A CENP-B, major centromer 96.4 0.0064 2.2E-07 40.2 5.3 56 4-61 23-86 (131)
96 1neq_A DNA-binding protein NER 96.3 0.0011 3.6E-08 40.0 1.0 25 2-26 19-43 (74)
97 2l8n_A Transcriptional repress 96.2 0.0018 6.2E-08 38.2 1.5 21 6-26 10-30 (67)
98 1qgp_A Protein (double strande 96.2 0.0024 8.2E-08 38.8 2.0 32 5-36 31-62 (77)
99 2heo_A Z-DNA binding protein 1 96.1 0.0028 9.6E-08 37.3 2.2 32 5-36 25-56 (67)
100 2htj_A P fimbrial regulatory p 96.1 0.0044 1.5E-07 37.6 3.1 33 4-36 13-45 (81)
101 3fmy_A HTH-type transcriptiona 96.1 0.0038 1.3E-07 37.1 2.8 24 3-26 22-45 (73)
102 1oyi_A Double-stranded RNA-bin 96.1 0.002 6.8E-08 39.6 1.5 37 2-38 27-63 (82)
103 1zx4_A P1 PARB, plasmid partit 96.1 0.0027 9.4E-08 45.3 2.3 28 3-30 22-49 (192)
104 1jhg_A Trp operon repressor; c 96.0 0.0039 1.3E-07 39.8 2.7 25 4-29 56-81 (101)
105 2k02_A Ferrous iron transport 96.0 0.0022 7.5E-08 39.9 1.4 34 3-36 13-47 (87)
106 2a6c_A Helix-turn-helix motif; 96.0 0.0029 1E-07 38.5 2.0 25 2-26 28-52 (83)
107 3cuo_A Uncharacterized HTH-typ 96.0 0.0024 8.1E-08 40.0 1.5 35 5-39 38-72 (99)
108 2d1h_A ST1889, 109AA long hypo 96.0 0.0037 1.3E-07 39.5 2.4 35 3-37 34-68 (109)
109 1xn7_A Hypothetical protein YH 96.0 0.0024 8.2E-08 38.9 1.4 33 3-35 13-46 (78)
110 2kko_A Possible transcriptiona 95.9 0.0026 9E-08 40.9 1.6 40 2-41 35-74 (108)
111 1r1u_A CZRA, repressor protein 95.9 0.0032 1.1E-07 40.3 2.0 37 3-39 37-73 (106)
112 2xi8_A Putative transcription 95.9 0.0045 1.5E-07 35.5 2.4 24 3-26 12-35 (66)
113 1y0u_A Arsenical resistance op 95.9 0.0044 1.5E-07 38.8 2.5 34 4-37 42-75 (96)
114 1zug_A Phage 434 CRO protein; 95.8 0.0054 1.9E-07 35.7 2.4 24 3-26 14-37 (71)
115 2jpc_A SSRB; DNA binding prote 95.8 0.0068 2.3E-07 34.4 2.8 28 3-30 11-38 (61)
116 1r69_A Repressor protein CI; g 95.8 0.0055 1.9E-07 35.4 2.4 24 3-26 12-35 (69)
117 2pij_A Prophage PFL 6 CRO; tra 95.8 0.0035 1.2E-07 36.4 1.5 25 2-27 11-35 (67)
118 2cw1_A SN4M; lambda CRO fold, 95.8 0.0047 1.6E-07 36.2 2.1 22 7-28 15-36 (65)
119 3kz3_A Repressor protein CI; f 95.8 0.0053 1.8E-07 37.0 2.4 24 3-26 23-46 (80)
120 2hin_A GP39, repressor protein 95.8 0.0059 2E-07 36.4 2.5 21 7-27 12-32 (71)
121 2l1p_A DNA-binding protein SAT 95.7 0.0073 2.5E-07 36.8 2.8 22 5-26 32-53 (83)
122 2jrt_A Uncharacterized protein 95.7 0.0085 2.9E-07 37.8 3.1 34 4-37 48-81 (95)
123 1qbj_A Protein (double-strande 95.7 0.0078 2.7E-07 36.9 2.8 33 5-37 27-59 (81)
124 1r1t_A Transcriptional repress 95.7 0.0065 2.2E-07 40.0 2.6 38 2-39 56-93 (122)
125 1rzs_A Antirepressor, regulato 95.6 0.0031 1.1E-07 36.3 0.9 23 4-26 9-31 (61)
126 2o8x_A Probable RNA polymerase 95.6 0.0099 3.4E-07 34.6 3.2 27 3-29 29-55 (70)
127 1z4h_A TORI, TOR inhibition pr 95.6 0.014 4.6E-07 34.1 3.7 51 6-61 11-62 (66)
128 3eus_A DNA-binding protein; st 95.6 0.0091 3.1E-07 36.6 3.1 24 3-26 25-48 (86)
129 2jsc_A Transcriptional regulat 95.6 0.0064 2.2E-07 39.7 2.4 39 3-41 32-70 (118)
130 3tgn_A ADC operon repressor AD 95.6 0.0077 2.6E-07 40.2 2.9 36 2-37 48-83 (146)
131 2r1j_L Repressor protein C2; p 95.6 0.0078 2.7E-07 34.6 2.6 24 3-26 16-39 (68)
132 2dk5_A DNA-directed RNA polyme 95.6 0.0064 2.2E-07 38.1 2.2 34 3-36 34-67 (91)
133 3omt_A Uncharacterized protein 95.5 0.0075 2.6E-07 35.5 2.4 24 3-26 19-42 (73)
134 2l0k_A Stage III sporulation p 95.5 0.0038 1.3E-07 39.3 1.1 24 4-27 19-42 (93)
135 1y7y_A C.AHDI; helix-turn-heli 95.5 0.0085 2.9E-07 35.1 2.5 24 3-26 24-47 (74)
136 2b5a_A C.BCLI; helix-turn-heli 95.4 0.0085 2.9E-07 35.4 2.5 24 3-26 21-44 (77)
137 2ppx_A AGR_C_3184P, uncharacte 95.4 0.011 3.7E-07 37.2 3.0 24 3-26 41-64 (99)
138 3qq6_A HTH-type transcriptiona 95.4 0.0088 3E-07 35.9 2.5 24 3-26 21-44 (78)
139 3bd1_A CRO protein; transcript 95.4 0.0091 3.1E-07 35.8 2.5 23 4-27 11-33 (79)
140 3b7h_A Prophage LP1 protein 11 95.4 0.0082 2.8E-07 35.6 2.3 24 3-26 18-41 (78)
141 4ghj_A Probable transcriptiona 95.4 0.0077 2.6E-07 38.4 2.2 24 3-26 47-70 (101)
142 2kpj_A SOS-response transcript 95.4 0.0078 2.7E-07 37.4 2.2 24 3-26 20-43 (94)
143 4ich_A Transcriptional regulat 95.4 0.0011 3.8E-08 50.3 -2.2 24 3-26 41-64 (311)
144 3t76_A VANU, transcriptional r 95.4 0.0061 2.1E-07 37.9 1.6 24 3-26 35-58 (88)
145 2lkp_A Transcriptional regulat 95.4 0.0067 2.3E-07 39.4 1.9 34 4-37 44-77 (119)
146 3bs3_A Putative DNA-binding pr 95.4 0.0096 3.3E-07 35.1 2.5 24 3-26 21-44 (76)
147 1fse_A GERE; helix-turn-helix 95.3 0.014 4.7E-07 34.3 3.1 27 3-29 24-50 (74)
148 2k9q_A Uncharacterized protein 95.3 0.011 3.7E-07 35.2 2.6 24 3-26 13-36 (77)
149 3trb_A Virulence-associated pr 95.3 0.0077 2.6E-07 38.6 1.9 24 3-26 25-48 (104)
150 1u2w_A CADC repressor, cadmium 95.3 0.0087 3E-07 39.3 2.2 38 4-41 55-92 (122)
151 2oqg_A Possible transcriptiona 95.3 0.0068 2.3E-07 38.9 1.6 36 4-39 33-68 (114)
152 2oa4_A SIR5; structure, struct 95.3 0.012 4.1E-07 37.5 2.7 32 4-35 49-80 (101)
153 1adr_A P22 C2 repressor; trans 95.2 0.012 4E-07 34.7 2.6 24 3-26 16-39 (76)
154 1ku9_A Hypothetical protein MJ 95.2 0.0078 2.7E-07 40.2 1.9 35 3-37 39-73 (152)
155 3o9x_A Uncharacterized HTH-typ 95.2 0.011 3.7E-07 39.3 2.5 24 3-26 82-105 (133)
156 1je8_A Nitrate/nitrite respons 95.2 0.016 5.6E-07 35.2 3.1 28 3-30 34-61 (82)
157 2wiu_B HTH-type transcriptiona 95.1 0.014 4.9E-07 35.4 2.8 24 3-26 23-46 (88)
158 3pqk_A Biofilm growth-associat 95.1 0.0095 3.2E-07 37.6 2.0 40 3-42 34-73 (102)
159 2ef8_A C.ECOT38IS, putative tr 95.1 0.014 4.7E-07 35.1 2.7 24 3-26 21-44 (84)
160 1j9i_A GPNU1 DBD;, terminase s 95.1 0.016 5.3E-07 34.0 2.8 45 6-56 3-50 (68)
161 3hug_A RNA polymerase sigma fa 95.1 0.017 5.9E-07 35.8 3.2 27 3-29 51-77 (92)
162 2eby_A Putative HTH-type trans 95.1 0.015 5.1E-07 37.3 3.0 25 2-26 21-45 (113)
163 2pn6_A ST1022, 150AA long hypo 95.1 0.016 5.4E-07 39.2 3.2 32 5-36 17-48 (150)
164 2hzt_A Putative HTH-type trans 95.1 0.011 3.8E-07 37.8 2.3 38 2-39 24-62 (107)
165 2p7v_B Sigma-70, RNA polymeras 95.1 0.019 6.6E-07 33.4 3.2 27 3-29 23-49 (68)
166 1ub9_A Hypothetical protein PH 95.1 0.0076 2.6E-07 37.6 1.4 33 4-36 29-61 (100)
167 2w48_A Sorbitol operon regulat 95.1 0.0096 3.3E-07 45.5 2.2 41 3-43 19-59 (315)
168 3f6w_A XRE-family like protein 95.1 0.014 4.7E-07 35.2 2.6 24 3-26 25-48 (83)
169 2qvo_A Uncharacterized protein 95.0 0.0092 3.1E-07 37.3 1.8 30 6-35 31-60 (95)
170 2pg4_A Uncharacterized protein 95.0 0.012 4E-07 36.7 2.2 32 5-36 30-62 (95)
171 2ys9_A Homeobox and leucine zi 94.9 0.0071 2.4E-07 35.7 0.8 40 109-148 17-56 (70)
172 3f6o_A Probable transcriptiona 94.9 0.0037 1.3E-07 40.8 -0.4 40 3-42 29-68 (118)
173 2ict_A Antitoxin HIGA; helix-t 94.9 0.017 5.9E-07 35.7 2.7 24 3-26 19-42 (94)
174 2cfx_A HTH-type transcriptiona 94.9 0.012 4.3E-07 39.6 2.2 33 4-36 18-50 (144)
175 2w25_A Probable transcriptiona 94.9 0.013 4.3E-07 39.8 2.2 33 4-36 20-52 (150)
176 1on2_A Transcriptional regulat 94.9 0.021 7E-07 38.1 3.3 33 4-36 21-53 (142)
177 1sfx_A Conserved hypothetical 94.9 0.02 6.8E-07 36.0 3.1 34 4-37 33-66 (109)
178 3r0a_A Putative transcriptiona 94.8 0.015 5E-07 38.3 2.4 32 6-37 43-74 (123)
179 2x4h_A Hypothetical protein SS 94.8 0.021 7.2E-07 37.9 3.2 33 4-36 30-62 (139)
180 1s7o_A Hypothetical UPF0122 pr 94.8 0.023 7.9E-07 36.9 3.2 27 3-29 36-62 (113)
181 1x57_A Endothelial differentia 94.7 0.022 7.5E-07 35.0 2.9 24 3-26 24-47 (91)
182 1z7u_A Hypothetical protein EF 94.7 0.011 3.6E-07 38.3 1.4 37 3-39 33-70 (112)
183 2rnj_A Response regulator prot 94.7 0.025 8.5E-07 35.0 3.1 28 3-30 42-69 (91)
184 2cyy_A Putative HTH-type trans 94.7 0.015 5E-07 39.5 2.3 32 5-36 21-52 (151)
185 3s8q_A R-M controller protein; 94.7 0.019 6.3E-07 34.5 2.5 24 3-26 22-45 (82)
186 3cec_A Putative antidote prote 94.7 0.019 6.4E-07 36.3 2.6 24 3-26 29-52 (104)
187 1lmb_3 Protein (lambda repress 94.7 0.02 6.7E-07 35.2 2.6 24 3-26 28-51 (92)
188 1ku3_A Sigma factor SIGA; heli 94.6 0.031 1.1E-06 33.0 3.3 26 4-29 29-54 (73)
189 2p5v_A Transcriptional regulat 94.6 0.016 5.4E-07 39.8 2.2 32 5-36 24-55 (162)
190 3hsr_A HTH-type transcriptiona 94.6 0.019 6.6E-07 38.1 2.6 34 4-37 49-82 (140)
191 2fu4_A Ferric uptake regulatio 94.6 0.023 7.8E-07 34.4 2.7 34 4-37 32-70 (83)
192 2ewt_A BLDD, putative DNA-bind 94.6 0.021 7.3E-07 33.1 2.4 24 3-26 19-44 (71)
193 3eco_A MEPR; mutlidrug efflux 94.5 0.02 6.7E-07 37.8 2.4 34 4-37 46-79 (139)
194 3ech_A MEXR, multidrug resista 94.5 0.024 8.1E-07 37.6 2.8 35 4-38 50-84 (142)
195 3c57_A Two component transcrip 94.5 0.031 1.1E-06 34.9 3.1 28 3-30 40-67 (95)
196 2cg4_A Regulatory protein ASNC 94.4 0.016 5.5E-07 39.3 1.9 32 5-36 22-53 (152)
197 3bpv_A Transcriptional regulat 94.4 0.029 9.9E-07 36.8 3.1 34 4-37 42-75 (138)
198 1iuf_A Centromere ABP1 protein 94.4 0.082 2.8E-06 35.7 5.4 59 4-62 29-95 (144)
199 2gxg_A 146AA long hypothetical 94.4 0.027 9.4E-07 37.3 3.0 35 3-37 48-82 (146)
200 2l49_A C protein; P2 bacteriop 94.4 0.03 1E-06 34.9 3.0 24 3-26 15-38 (99)
201 1x3u_A Transcriptional regulat 94.4 0.031 1.1E-06 33.3 3.0 28 3-30 29-56 (79)
202 2e1c_A Putative HTH-type trans 94.4 0.023 8E-07 39.6 2.6 32 5-36 41-72 (171)
203 3bro_A Transcriptional regulat 94.4 0.03 1E-06 36.9 3.1 33 5-37 50-82 (141)
204 1q1h_A TFE, transcription fact 94.3 0.022 7.6E-07 36.4 2.3 34 5-38 33-66 (110)
205 2o38_A Hypothetical protein; a 94.3 0.024 8.1E-07 37.2 2.5 24 3-26 51-74 (120)
206 3nrv_A Putative transcriptiona 94.3 0.031 1.1E-06 37.2 3.1 34 4-37 53-86 (148)
207 1tty_A Sigma-A, RNA polymerase 94.3 0.039 1.3E-06 33.8 3.3 26 4-29 37-62 (87)
208 3i4p_A Transcriptional regulat 94.3 0.032 1.1E-06 38.4 3.2 32 5-36 17-48 (162)
209 3kp7_A Transcriptional regulat 94.3 0.025 8.7E-07 37.9 2.6 34 3-36 49-82 (151)
210 2fbh_A Transcriptional regulat 94.3 0.035 1.2E-06 36.8 3.3 35 3-37 50-84 (146)
211 2ovg_A Phage lambda CRO; trans 94.3 0.028 9.7E-07 32.9 2.4 21 7-27 15-35 (66)
212 3k0l_A Repressor protein; heli 94.3 0.037 1.3E-06 37.6 3.4 35 4-38 59-93 (162)
213 2hr3_A Probable transcriptiona 94.3 0.032 1.1E-06 37.0 3.1 35 3-37 48-82 (147)
214 2ia0_A Putative HTH-type trans 94.2 0.022 7.4E-07 39.7 2.2 32 5-36 31-62 (171)
215 3vk0_A NHTF, transcriptional r 94.2 0.036 1.2E-06 35.7 3.1 24 3-26 32-55 (114)
216 3f6v_A Possible transcriptiona 94.2 0.01 3.5E-07 40.6 0.5 57 2-58 68-124 (151)
217 2dbb_A Putative HTH-type trans 94.2 0.019 6.4E-07 38.9 1.8 32 5-36 23-54 (151)
218 4aik_A Transcriptional regulat 94.2 0.039 1.3E-06 37.4 3.4 34 4-37 45-78 (151)
219 2fsw_A PG_0823 protein; alpha- 94.2 0.018 6.2E-07 36.7 1.6 38 2-39 35-73 (107)
220 3e7l_A Transcriptional regulat 94.2 0.023 7.9E-07 32.8 1.9 27 3-29 30-56 (63)
221 2nnn_A Probable transcriptiona 94.1 0.031 1E-06 36.7 2.7 34 4-37 51-84 (140)
222 1b0n_A Protein (SINR protein); 94.1 0.032 1.1E-06 35.4 2.7 24 3-26 12-35 (111)
223 2jvl_A TRMBF1; coactivator, he 94.1 0.047 1.6E-06 34.9 3.4 24 3-26 47-70 (107)
224 2ao9_A Phage protein; structur 94.1 0.036 1.2E-06 38.1 3.0 25 4-28 47-71 (155)
225 2wus_R RODZ, putative uncharac 94.0 0.035 1.2E-06 36.0 2.7 24 3-26 18-41 (112)
226 2frh_A SARA, staphylococcal ac 94.0 0.078 2.7E-06 34.7 4.5 36 4-39 52-87 (127)
227 1xsv_A Hypothetical UPF0122 pr 94.0 0.041 1.4E-06 35.7 3.0 27 3-29 39-65 (113)
228 2fa5_A Transcriptional regulat 94.0 0.045 1.5E-06 37.0 3.4 34 4-37 62-95 (162)
229 2zkz_A Transcriptional repress 94.0 0.016 5.5E-07 36.5 1.0 32 4-36 40-71 (99)
230 3hrs_A Metalloregulator SCAR; 93.9 0.044 1.5E-06 39.5 3.4 34 4-37 19-52 (214)
231 3bdd_A Regulatory protein MARR 93.9 0.04 1.4E-06 36.3 3.0 34 4-37 44-77 (142)
232 1jgs_A Multiple antibiotic res 93.9 0.041 1.4E-06 36.1 3.0 34 4-37 47-80 (138)
233 3g5g_A Regulatory protein; tra 93.9 0.044 1.5E-06 34.5 3.0 24 3-26 39-62 (99)
234 3fm5_A Transcriptional regulat 93.9 0.047 1.6E-06 36.5 3.3 35 4-38 53-87 (150)
235 2h09_A Transcriptional regulat 93.9 0.047 1.6E-06 36.9 3.3 33 4-36 53-85 (155)
236 3op9_A PLI0006 protein; struct 93.8 0.039 1.3E-06 35.4 2.7 24 3-26 20-43 (114)
237 1lj9_A Transcriptional regulat 93.8 0.031 1.1E-06 37.0 2.4 34 4-37 42-75 (144)
238 2f2e_A PA1607; transcription f 93.8 0.033 1.1E-06 37.7 2.4 35 4-38 36-70 (146)
239 2rdp_A Putative transcriptiona 93.8 0.04 1.4E-06 36.7 2.9 34 4-37 55-88 (150)
240 3oop_A LIN2960 protein; protei 93.8 0.031 1E-06 37.1 2.3 34 4-37 50-83 (143)
241 3s2w_A Transcriptional regulat 93.7 0.032 1.1E-06 37.8 2.3 35 4-38 63-97 (159)
242 3jw4_A Transcriptional regulat 93.7 0.029 9.9E-07 37.5 2.0 36 4-39 56-91 (148)
243 3ivp_A Putative transposon-rel 93.7 0.05 1.7E-06 35.5 3.2 24 3-26 23-46 (126)
244 1sfu_A 34L protein; protein/Z- 93.7 0.047 1.6E-06 32.7 2.7 31 6-36 30-60 (75)
245 1uly_A Hypothetical protein PH 93.7 0.037 1.3E-06 39.3 2.6 35 3-37 31-65 (192)
246 1tbx_A ORF F-93, hypothetical 93.7 0.035 1.2E-06 34.7 2.2 34 4-37 21-58 (99)
247 3g3z_A NMB1585, transcriptiona 93.7 0.047 1.6E-06 36.2 3.0 34 4-37 44-77 (145)
248 3cdh_A Transcriptional regulat 93.6 0.047 1.6E-06 36.7 3.0 34 4-37 56-89 (155)
249 3ulq_B Transcriptional regulat 93.6 0.06 2E-06 33.4 3.1 26 4-29 43-68 (90)
250 2wte_A CSA3; antiviral protein 93.6 0.042 1.4E-06 40.6 2.8 34 4-37 165-198 (244)
251 3f52_A CLP gene regulator (CLG 93.5 0.053 1.8E-06 34.9 3.0 24 3-26 39-62 (117)
252 3kjx_A Transcriptional regulat 93.5 0.032 1.1E-06 42.5 2.2 23 6-28 11-33 (344)
253 2a61_A Transcriptional regulat 93.5 0.05 1.7E-06 36.0 2.9 34 4-37 46-79 (145)
254 3mlf_A Transcriptional regulat 93.5 0.052 1.8E-06 34.9 2.8 24 3-26 34-57 (111)
255 2eth_A Transcriptional regulat 93.5 0.047 1.6E-06 36.7 2.8 34 4-37 57-90 (154)
256 2pex_A Transcriptional regulat 93.5 0.039 1.3E-06 37.0 2.3 34 4-37 60-93 (153)
257 3nqo_A MARR-family transcripti 93.4 0.048 1.6E-06 38.3 2.8 35 4-38 56-90 (189)
258 3bj6_A Transcriptional regulat 93.4 0.041 1.4E-06 36.7 2.4 34 4-37 53-86 (152)
259 4fx0_A Probable transcriptiona 93.4 0.053 1.8E-06 36.6 2.9 32 5-36 52-83 (148)
260 2fbi_A Probable transcriptiona 93.4 0.037 1.3E-06 36.4 2.1 34 4-37 49-82 (142)
261 3kxa_A NGO0477 protein, putati 93.4 0.049 1.7E-06 36.7 2.7 24 3-26 79-102 (141)
262 4hbl_A Transcriptional regulat 93.3 0.038 1.3E-06 37.0 2.1 35 4-38 54-88 (149)
263 3deu_A Transcriptional regulat 93.3 0.043 1.5E-06 37.6 2.4 35 4-38 67-101 (166)
264 2qww_A Transcriptional regulat 93.3 0.044 1.5E-06 36.8 2.4 34 4-37 54-87 (154)
265 2jt1_A PEFI protein; solution 93.3 0.038 1.3E-06 33.4 1.8 32 6-37 25-56 (77)
266 1p4w_A RCSB; solution structur 93.3 0.065 2.2E-06 33.9 3.0 28 3-30 47-74 (99)
267 1yyv_A Putative transcriptiona 93.3 0.033 1.1E-06 37.1 1.6 45 2-46 45-90 (131)
268 1umq_A Photosynthetic apparatu 93.2 0.036 1.2E-06 33.9 1.6 27 3-29 52-78 (81)
269 1i1g_A Transcriptional regulat 93.2 0.077 2.6E-06 35.2 3.5 32 5-36 18-49 (141)
270 3cjn_A Transcriptional regulat 93.2 0.045 1.5E-06 37.1 2.3 34 4-37 65-98 (162)
271 3bja_A Transcriptional regulat 93.2 0.032 1.1E-06 36.6 1.5 34 4-37 46-79 (139)
272 3bdn_A Lambda repressor; repre 93.1 0.053 1.8E-06 39.2 2.7 27 2-28 27-53 (236)
273 1ntc_A Protein (nitrogen regul 93.1 0.041 1.4E-06 34.2 1.8 27 3-29 62-88 (91)
274 1p6r_A Penicillinase repressor 93.0 0.056 1.9E-06 32.5 2.3 34 4-37 22-59 (82)
275 3fym_A Putative uncharacterize 93.0 0.054 1.8E-06 35.9 2.4 24 3-26 14-37 (130)
276 3df8_A Possible HXLR family tr 93.0 0.052 1.8E-06 34.9 2.2 33 6-38 41-76 (111)
277 1qpz_A PURA, protein (purine n 92.9 0.054 1.8E-06 41.2 2.6 22 7-28 2-23 (340)
278 2p5k_A Arginine repressor; DNA 92.9 0.073 2.5E-06 30.3 2.6 26 4-29 18-48 (64)
279 2p5t_A Putative transcriptiona 92.8 0.02 6.8E-07 39.2 0.0 24 3-26 12-35 (158)
280 4b8x_A SCO5413, possible MARR- 92.8 0.042 1.4E-06 37.0 1.6 35 5-39 51-85 (147)
281 3lfp_A CSP231I C protein; tran 92.7 0.077 2.6E-06 33.0 2.7 24 3-26 12-39 (98)
282 3e6m_A MARR family transcripti 92.6 0.041 1.4E-06 37.3 1.5 35 4-38 66-100 (161)
283 1s3j_A YUSO protein; structura 92.6 0.045 1.5E-06 36.7 1.7 34 4-37 50-83 (155)
284 3f3x_A Transcriptional regulat 92.6 0.038 1.3E-06 36.6 1.3 31 7-37 52-82 (144)
285 2hsg_A Glucose-resistance amyl 92.6 0.055 1.9E-06 40.9 2.3 23 6-28 3-25 (332)
286 2nyx_A Probable transcriptiona 92.6 0.057 1.9E-06 37.0 2.1 34 4-37 58-91 (168)
287 1nr3_A MTH0916, DNA-binding pr 92.5 0.017 5.8E-07 37.9 -0.6 28 1-28 1-28 (122)
288 1v4r_A Transcriptional repress 92.5 0.063 2.2E-06 33.8 2.1 32 7-38 37-68 (102)
289 2y75_A HTH-type transcriptiona 92.5 0.1 3.5E-06 34.3 3.2 38 6-43 27-66 (129)
290 2p4w_A Transcriptional regulat 92.4 0.041 1.4E-06 39.4 1.3 35 3-37 26-60 (202)
291 2bv6_A MGRA, HTH-type transcri 92.3 0.047 1.6E-06 36.0 1.4 34 4-37 50-83 (142)
292 2lfw_A PHYR sigma-like domain; 92.3 0.084 2.9E-06 35.8 2.7 28 3-30 107-134 (157)
293 3b73_A PHIH1 repressor-like pr 92.3 0.031 1.1E-06 36.3 0.4 33 5-37 27-61 (111)
294 2o20_A Catabolite control prot 92.2 0.026 9E-07 42.8 0.0 28 2-29 2-29 (332)
295 3u2r_A Regulatory protein MARR 92.2 0.052 1.8E-06 37.1 1.5 35 4-38 61-95 (168)
296 3boq_A Transcriptional regulat 92.1 0.043 1.5E-06 37.0 1.0 34 4-37 61-94 (160)
297 1z91_A Organic hydroperoxide r 92.1 0.041 1.4E-06 36.6 0.9 35 4-38 53-87 (147)
298 1fx7_A Iron-dependent represso 92.1 0.053 1.8E-06 39.4 1.6 34 4-37 21-56 (230)
299 2o0y_A Transcriptional regulat 92.0 0.11 3.7E-06 38.5 3.1 34 4-37 37-70 (260)
300 2qq9_A Diphtheria toxin repres 91.9 0.058 2E-06 39.1 1.6 33 4-36 21-55 (226)
301 3h5t_A Transcriptional regulat 91.9 0.063 2.2E-06 41.2 1.8 23 6-28 10-32 (366)
302 3cta_A Riboflavin kinase; stru 91.9 0.094 3.2E-06 38.0 2.7 32 4-35 26-57 (230)
303 1okr_A MECI, methicillin resis 91.8 0.076 2.6E-06 34.3 2.0 35 4-38 23-61 (123)
304 2g7u_A Transcriptional regulat 91.8 0.12 4E-06 38.2 3.2 33 4-36 28-60 (257)
305 2b0l_A GTP-sensing transcripti 91.8 0.12 4.2E-06 32.7 2.9 33 7-39 45-77 (102)
306 3jvd_A Transcriptional regulat 91.6 0.033 1.1E-06 42.3 0.0 23 6-28 7-29 (333)
307 1mkm_A ICLR transcriptional re 91.6 0.11 3.9E-06 38.1 2.9 34 5-38 23-56 (249)
308 2fbk_A Transcriptional regulat 91.5 0.041 1.4E-06 38.2 0.4 33 5-37 86-118 (181)
309 1jhf_A LEXA repressor; LEXA SO 91.5 0.13 4.3E-06 36.5 2.9 32 4-35 22-56 (202)
310 2xrn_A HTH-type transcriptiona 91.4 0.089 3E-06 38.5 2.2 33 5-37 21-53 (241)
311 1x2l_A CUT-like 2, homeobox pr 91.4 0.067 2.3E-06 34.0 1.2 33 3-35 32-65 (101)
312 1y9q_A Transcriptional regulat 91.3 0.11 3.6E-06 36.4 2.4 24 3-26 22-45 (192)
313 3k69_A Putative transcription 91.3 0.12 4E-06 35.7 2.5 39 6-44 29-69 (162)
314 2jml_A DNA binding domain/tran 91.2 0.36 1.2E-05 29.0 4.5 66 5-76 5-75 (81)
315 1g2h_A Transcriptional regulat 91.1 0.13 4.5E-06 29.3 2.2 23 7-29 35-57 (61)
316 3k2z_A LEXA repressor; winged 91.1 0.082 2.8E-06 37.4 1.6 31 6-36 25-55 (196)
317 3t72_q RNA polymerase sigma fa 91.0 0.16 5.5E-06 32.1 2.8 26 4-29 38-63 (99)
318 2obp_A Putative DNA-binding pr 90.8 0.23 7.9E-06 31.2 3.4 32 5-36 36-67 (96)
319 3r4k_A Transcriptional regulat 90.7 0.1 3.5E-06 38.7 1.9 34 4-37 20-53 (260)
320 4g6q_A Putative uncharacterize 90.7 0.11 3.9E-06 36.4 2.1 36 1-36 32-68 (182)
321 2bnm_A Epoxidase; oxidoreducta 90.7 0.14 4.6E-06 36.0 2.5 24 3-26 21-44 (198)
322 4a5n_A Uncharacterized HTH-typ 90.3 0.15 5.3E-06 33.9 2.3 45 2-46 36-81 (131)
323 3t8r_A Staphylococcus aureus C 90.3 0.14 4.6E-06 34.5 2.1 39 6-44 29-69 (143)
324 2ia2_A Putative transcriptiona 90.3 0.13 4.5E-06 38.1 2.2 33 4-36 35-67 (265)
325 3frw_A Putative Trp repressor 90.2 0.24 8.1E-06 31.8 3.0 27 3-29 56-82 (107)
326 3kor_A Possible Trp repressor; 90.2 0.1 3.6E-06 34.1 1.4 27 3-29 73-99 (119)
327 2vn2_A DNAD, chromosome replic 90.1 0.2 6.8E-06 33.0 2.8 34 4-37 50-83 (128)
328 3h5o_A Transcriptional regulat 90.1 0.057 1.9E-06 41.0 0.0 23 6-28 5-27 (339)
329 4dyq_A Gene 1 protein; GP1, oc 90.0 0.15 5.1E-06 34.2 2.1 26 4-29 27-53 (140)
330 1ylf_A RRF2 family protein; st 90.0 0.25 8.7E-06 33.3 3.3 37 6-43 31-69 (149)
331 2auw_A Hypothetical protein NE 89.9 0.18 6.1E-06 35.2 2.4 24 3-26 101-124 (170)
332 3tqn_A Transcriptional regulat 89.9 0.23 8E-06 31.9 2.9 32 7-38 35-66 (113)
333 2fxa_A Protease production reg 89.9 0.13 4.4E-06 36.7 1.8 59 4-62 61-122 (207)
334 3dbi_A Sugar-binding transcrip 89.9 0.06 2E-06 40.8 0.0 23 6-28 4-26 (338)
335 2o0m_A Transcriptional regulat 89.9 0.06 2.1E-06 41.6 0.0 34 4-37 33-66 (345)
336 3lwf_A LIN1550 protein, putati 89.6 0.2 6.7E-06 34.5 2.5 38 6-43 45-84 (159)
337 3e3m_A Transcriptional regulat 89.6 0.065 2.2E-06 41.0 0.0 23 6-28 13-35 (355)
338 3bil_A Probable LACI-family tr 89.6 0.065 2.2E-06 41.0 0.0 23 6-28 9-31 (348)
339 2vz4_A Tipal, HTH-type transcr 89.6 0.81 2.8E-05 29.0 5.3 66 5-76 1-69 (108)
340 1jye_A Lactose operon represso 89.6 0.065 2.2E-06 40.9 0.0 24 6-29 4-27 (349)
341 1r71_A Transcriptional repress 89.5 0.15 5E-06 35.9 1.8 27 3-29 50-76 (178)
342 2zcw_A TTHA1359, transcription 89.5 0.25 8.6E-06 34.4 3.0 32 6-37 147-178 (202)
343 1wh8_A CUT-like 2, homeobox pr 89.3 0.13 4.6E-06 33.2 1.4 33 3-35 42-75 (111)
344 3ctp_A Periplasmic binding pro 89.3 0.07 2.4E-06 40.3 0.0 24 6-29 3-26 (330)
345 3dv8_A Transcriptional regulat 89.3 0.26 9E-06 34.6 3.0 33 5-37 169-201 (220)
346 2p8t_A Hypothetical protein PH 89.3 0.28 9.5E-06 35.1 3.1 59 4-66 29-87 (200)
347 1wh6_A CUT-like 2, homeobox pr 89.2 0.17 5.8E-06 32.1 1.7 28 2-29 31-59 (101)
348 3mq0_A Transcriptional repress 89.2 0.17 5.7E-06 37.9 2.0 35 4-38 44-78 (275)
349 4ev0_A Transcription regulator 89.1 0.27 9.3E-06 34.4 3.0 32 6-37 164-195 (216)
350 3by6_A Predicted transcription 88.9 0.3 1E-05 32.1 2.9 33 7-39 37-69 (126)
351 3neu_A LIN1836 protein; struct 88.9 0.18 6.1E-06 33.1 1.8 33 7-39 39-71 (125)
352 2fe3_A Peroxide operon regulat 88.9 0.39 1.3E-05 32.2 3.5 38 4-41 36-78 (145)
353 1sd4_A Penicillinase repressor 88.8 0.24 8.1E-06 32.0 2.3 34 4-37 23-60 (126)
354 2g9w_A Conserved hypothetical 88.8 0.24 8.3E-06 32.8 2.4 35 4-38 23-61 (138)
355 3u1d_A Uncharacterized protein 88.8 0.32 1.1E-05 33.2 3.0 31 6-36 46-77 (151)
356 3e97_A Transcriptional regulat 88.7 0.3 1E-05 34.7 3.0 32 6-37 176-207 (231)
357 1j5y_A Transcriptional regulat 88.7 0.26 9E-06 34.5 2.7 29 6-34 37-65 (187)
358 1p4x_A Staphylococcal accessor 88.5 0.12 4.2E-06 38.2 0.9 53 5-57 174-229 (250)
359 2ofy_A Putative XRE-family tra 88.4 0.27 9.3E-06 29.4 2.3 20 7-26 29-48 (86)
360 2fmy_A COOA, carbon monoxide o 88.4 0.32 1.1E-05 34.3 3.0 33 5-37 167-199 (220)
361 1r8d_A Transcription activator 88.4 0.89 3E-05 28.9 4.8 65 6-76 3-70 (109)
362 2qlz_A Transcription factor PF 88.3 0.13 4.4E-06 37.7 0.8 36 2-37 22-57 (232)
363 3d0s_A Transcriptional regulat 88.2 0.34 1.2E-05 34.3 3.0 32 6-37 178-209 (227)
364 1zs4_A Regulatory protein CII; 88.2 0.21 7.3E-06 30.5 1.6 22 6-27 25-46 (83)
365 1u78_A TC3 transposase, transp 88.1 0.33 1.1E-05 31.8 2.7 26 4-29 76-103 (141)
366 2o4a_A DNA-binding protein SAT 88.1 0.096 3.3E-06 32.8 0.0 26 4-29 23-49 (93)
367 3fx3_A Cyclic nucleotide-bindi 88.0 0.35 1.2E-05 34.4 3.1 29 6-35 179-207 (237)
368 2k4b_A Transcriptional regulat 88.0 0.21 7.3E-06 31.5 1.6 33 4-36 48-84 (99)
369 3la7_A Global nitrogen regulat 87.9 0.36 1.2E-05 34.8 3.0 32 6-37 194-225 (243)
370 2hoe_A N-acetylglucosamine kin 87.9 0.28 9.4E-06 38.2 2.6 34 4-37 32-65 (380)
371 2ek5_A Predicted transcription 87.9 0.36 1.2E-05 31.9 2.8 33 7-39 30-62 (129)
372 3b02_A Transcriptional regulat 87.9 0.27 9.3E-06 34.0 2.3 32 6-37 140-171 (195)
373 2o03_A Probable zinc uptake re 87.8 0.31 1.1E-05 32.1 2.4 37 4-40 25-66 (131)
374 3e6c_C CPRK, cyclic nucleotide 87.7 0.37 1.3E-05 34.7 3.0 33 5-37 177-209 (250)
375 1ft9_A Carbon monoxide oxidati 87.7 0.41 1.4E-05 33.8 3.2 32 6-37 164-195 (222)
376 2gau_A Transcriptional regulat 87.4 0.38 1.3E-05 34.1 2.9 33 5-37 180-212 (232)
377 2o3f_A Putative HTH-type trans 87.4 0.4 1.4E-05 30.8 2.7 25 5-29 39-63 (111)
378 4ham_A LMO2241 protein; struct 87.1 0.44 1.5E-05 31.4 2.9 31 7-37 40-70 (134)
379 1z6r_A MLC protein; transcript 87.1 0.38 1.3E-05 37.7 2.9 34 4-37 29-62 (406)
380 1xd7_A YWNA; structural genomi 87.0 0.56 1.9E-05 31.4 3.4 38 7-45 25-64 (145)
381 1z05_A Transcriptional regulat 87.0 0.36 1.2E-05 38.2 2.8 34 4-37 52-85 (429)
382 2fjr_A Repressor protein CI; g 86.6 0.35 1.2E-05 33.6 2.2 21 7-27 22-42 (189)
383 2k27_A Paired box protein PAX- 86.4 0.89 3E-05 30.6 4.2 36 4-39 100-145 (159)
384 2bgc_A PRFA; bacterial infecti 86.1 0.46 1.6E-05 34.0 2.7 33 5-37 169-202 (238)
385 3iwf_A Transcription regulator 86.0 0.55 1.9E-05 30.0 2.8 25 5-29 35-59 (107)
386 1xwr_A Regulatory protein CII; 85.9 0.21 7.3E-06 31.4 0.7 25 4-28 22-46 (97)
387 2rgt_A Fusion of LIM/homeobox 85.8 0.02 6.7E-07 39.8 -4.6 30 96-125 134-163 (169)
388 1mzb_A Ferric uptake regulatio 85.4 0.57 1.9E-05 31.0 2.7 36 5-40 34-74 (136)
389 1xmk_A Double-stranded RNA-spe 85.2 0.49 1.7E-05 28.6 2.1 33 4-36 24-57 (79)
390 1bia_A BIRA bifunctional prote 85.2 0.49 1.7E-05 36.1 2.6 31 6-36 20-50 (321)
391 3gp4_A Transcriptional regulat 85.2 2.9 9.9E-05 27.9 6.2 64 5-76 2-70 (142)
392 2v79_A DNA replication protein 84.8 0.57 2E-05 31.2 2.5 34 4-37 50-83 (135)
393 3hh0_A Transcriptional regulat 84.5 1.7 6E-05 29.2 4.9 66 4-75 3-71 (146)
394 1p4x_A Staphylococcal accessor 84.2 0.31 1E-05 36.0 1.0 131 4-142 49-191 (250)
395 1q06_A Transcriptional regulat 84.2 2.3 7.7E-05 28.1 5.3 65 6-76 1-68 (135)
396 2xig_A Ferric uptake regulatio 84.1 0.88 3E-05 30.7 3.3 36 4-39 41-81 (150)
397 1vz0_A PARB, chromosome partit 84.0 0.66 2.3E-05 33.8 2.7 26 3-28 132-157 (230)
398 1r7j_A Conserved hypothetical 83.6 0.97 3.3E-05 28.1 3.1 51 4-58 19-69 (95)
399 2yu3_A DNA-directed RNA polyme 83.4 0.67 2.3E-05 29.0 2.2 33 3-35 51-83 (95)
400 1wiz_A DNA-binding protein SAT 83.4 0.21 7.3E-06 31.7 -0.1 26 4-29 33-59 (101)
401 3c7j_A Transcriptional regulat 83.0 0.75 2.6E-05 33.4 2.7 38 6-43 50-87 (237)
402 3ic7_A Putative transcriptiona 83.0 0.35 1.2E-05 31.7 0.8 33 7-39 37-69 (126)
403 4fcy_A Transposase; rnaseh, DD 82.9 2 6.7E-05 34.8 5.4 25 9-33 56-80 (529)
404 1b4a_A Arginine repressor; hel 81.9 0.64 2.2E-05 31.6 1.8 24 6-29 20-48 (149)
405 3qp6_A CVIR transcriptional re 81.7 1.1 3.6E-05 33.2 3.1 28 3-30 210-237 (265)
406 2qlz_A Transcription factor PF 81.3 0.44 1.5E-05 34.8 0.9 35 2-36 175-209 (232)
407 3gpv_A Transcriptional regulat 81.2 3.1 0.00011 27.9 5.2 66 5-76 16-84 (148)
408 2vxz_A Pyrsv_GP04; viral prote 81.2 0.81 2.8E-05 31.1 2.1 40 4-43 22-62 (165)
409 3ihu_A Transcriptional regulat 81.0 1.5 5.2E-05 31.2 3.7 38 6-43 40-77 (222)
410 2qfc_A PLCR protein; TPR, HTH, 80.9 0.72 2.5E-05 33.8 2.0 22 4-26 17-38 (293)
411 2xvc_A ESCRT-III, SSO0910; cel 80.8 1 3.4E-05 25.4 2.0 30 6-35 26-55 (59)
412 2ijl_A AGR_C_4647P, molybdenum 80.8 1.1 3.6E-05 29.9 2.6 25 7-31 40-64 (135)
413 1hsj_A Fusion protein consisti 80.7 0.49 1.7E-05 37.7 1.1 37 4-40 419-455 (487)
414 3u3w_A Transcriptional activat 80.6 1 3.4E-05 33.0 2.7 23 3-26 16-38 (293)
415 2w57_A Ferric uptake regulatio 80.5 0.93 3.2E-05 30.6 2.3 34 5-38 33-71 (150)
416 2zhg_A Redox-sensitive transcr 80.2 2.3 8E-05 28.8 4.3 63 5-75 11-77 (154)
417 3pxp_A Helix-turn-helix domain 80.1 1.1 3.8E-05 33.9 2.8 23 4-26 24-46 (292)
418 3mky_B Protein SOPB; partition 80.0 1.3 4.6E-05 31.2 3.0 25 5-29 42-66 (189)
419 2lnb_A Z-DNA-binding protein 1 79.7 0.45 1.5E-05 28.6 0.4 33 6-38 35-68 (80)
420 2xzm_8 RPS25E,; ribosome, tran 79.3 0.84 2.9E-05 30.6 1.7 34 6-39 64-97 (143)
421 1yse_A DNA-binding protein SAT 79.2 0.31 1E-05 32.7 -0.5 28 3-30 36-64 (141)
422 1ixc_A CBNR, LYSR-type regulat 78.9 1.2 4.2E-05 32.2 2.7 24 7-30 17-40 (294)
423 3u5c_Z RP45, S31, YS23, 40S ri 78.3 0.93 3.2E-05 29.0 1.6 34 6-39 60-93 (108)
424 3mwm_A ZUR, putative metal upt 78.2 1.5 5E-05 29.2 2.6 36 5-40 29-69 (139)
425 1al3_A Cys regulon transcripti 78.2 0.43 1.5E-05 35.6 0.0 28 2-29 13-40 (324)
426 2kfs_A Conserved hypothetical 78.1 1.2 4.2E-05 30.1 2.2 23 6-28 32-54 (148)
427 3lsg_A Two-component response 78.1 2 6.9E-05 26.5 3.2 25 5-29 19-43 (103)
428 2wv0_A YVOA, HTH-type transcri 78.1 1.3 4.6E-05 32.2 2.7 31 7-37 36-66 (243)
429 3sxy_A Transcriptional regulat 78.0 1.5 5E-05 31.2 2.8 38 6-43 36-73 (218)
430 3vpr_A Transcriptional regulat 77.7 1.4 4.9E-05 29.8 2.6 23 4-26 22-44 (190)
431 2fq4_A Transcriptional regulat 77.5 1.5 5E-05 29.9 2.6 23 4-26 31-53 (192)
432 3iz6_V 40S ribosomal protein S 77.4 0.83 2.8E-05 29.2 1.2 34 6-39 61-94 (108)
433 2esn_A Probable transcriptiona 76.8 1.5 5.2E-05 32.1 2.7 23 7-29 26-48 (310)
434 1j1v_A Chromosomal replication 76.5 2 7E-05 26.6 2.8 27 4-30 45-72 (94)
435 2hs5_A Putative transcriptiona 76.4 1.9 6.5E-05 31.2 3.0 38 6-43 52-89 (239)
436 2d6y_A Putative TETR family re 76.3 1.6 5.5E-05 30.1 2.6 23 4-26 27-49 (202)
437 3hhg_A Transcriptional regulat 76.1 1.6 5.6E-05 31.7 2.7 28 7-34 19-47 (306)
438 3szp_A Transcriptional regulat 75.9 1.7 5.7E-05 31.3 2.7 28 7-34 17-45 (291)
439 2wui_A MEXZ, transcriptional r 75.9 1.7 5.8E-05 30.1 2.6 23 4-26 30-52 (210)
440 2eh3_A Transcriptional regulat 75.8 1.7 5.9E-05 29.1 2.6 23 4-26 21-43 (179)
441 2dg6_A Putative transcriptiona 75.8 6.1 0.00021 28.5 5.6 66 6-77 1-70 (222)
442 2gqq_A Leucine-responsive regu 75.7 0.36 1.2E-05 32.9 -1.0 32 5-36 27-58 (163)
443 3egq_A TETR family transcripti 75.7 1.4 4.9E-05 29.2 2.1 23 4-26 23-45 (170)
444 3mn2_A Probable ARAC family tr 75.6 2.6 8.7E-05 26.2 3.2 26 4-29 17-42 (108)
445 1hlv_A CENP-B, major centromer 75.6 1.5 5.2E-05 28.3 2.2 48 101-151 4-51 (131)
446 2zcm_A Biofilm operon icaabcd 75.2 1.7 5.8E-05 29.4 2.4 23 4-26 26-48 (192)
447 3vib_A MTRR; helix-turn-helix 75.2 1.8 6.1E-05 29.8 2.6 23 4-26 29-51 (210)
448 2v57_A TETR family transcripti 75.2 1.8 6.3E-05 29.1 2.6 23 4-26 31-53 (190)
449 3oou_A LIN2118 protein; protei 75.1 2.7 9.1E-05 26.2 3.2 26 4-29 20-45 (108)
450 3fxq_A LYSR type regulator of 75.1 1.7 5.9E-05 31.8 2.6 25 7-31 18-42 (305)
451 3edp_A LIN2111 protein; APC883 74.8 1.9 6.6E-05 31.2 2.7 33 7-39 35-67 (236)
452 3iuo_A ATP-dependent DNA helic 74.8 1.6 5.5E-05 28.4 2.1 33 2-34 29-61 (122)
453 3lwj_A Putative TETR-family tr 74.7 1.8 6.2E-05 29.4 2.5 23 4-26 31-53 (202)
454 3lhq_A Acrab operon repressor 74.7 1.9 6.5E-05 29.5 2.6 23 4-26 33-55 (220)
455 3f8m_A GNTR-family protein tra 74.6 2 6.7E-05 31.4 2.7 31 7-37 38-68 (248)
456 3qkx_A Uncharacterized HTH-typ 74.4 2 6.8E-05 28.7 2.6 23 4-26 27-49 (188)
457 2di3_A Bacterial regulatory pr 74.4 1.8 6.2E-05 31.2 2.5 30 8-37 31-60 (239)
458 3rkx_A Biotin-[acetyl-COA-carb 74.3 2 6.8E-05 32.8 2.8 29 6-34 20-48 (323)
459 3on4_A Transcriptional regulat 74.1 1.6 5.6E-05 29.2 2.1 23 4-26 29-51 (191)
460 2cob_A LCOR protein; MLR2, KIA 74.0 4.9 0.00017 23.5 3.8 26 4-29 28-54 (70)
461 1hw1_A FADR, fatty acid metabo 74.0 2.2 7.7E-05 30.5 2.9 32 7-38 33-64 (239)
462 3bwg_A Uncharacterized HTH-typ 74.0 2.1 7.2E-05 31.0 2.7 30 7-36 31-60 (239)
463 3oio_A Transcriptional regulat 74.0 3 0.0001 26.2 3.2 26 4-29 22-47 (113)
464 2elh_A CG11849-PA, LD40883P; s 73.9 1.9 6.4E-05 26.0 2.1 45 99-148 17-61 (87)
465 3eet_A Putative GNTR-family tr 73.9 1.8 6.2E-05 32.1 2.4 31 7-37 55-85 (272)
466 3kz9_A SMCR; transcriptional r 73.8 2.1 7E-05 29.0 2.6 23 4-26 36-58 (206)
467 2oer_A Probable transcriptiona 73.7 2.1 7.1E-05 29.7 2.6 23 4-26 43-65 (214)
468 3gzi_A Transcriptional regulat 73.7 2.1 7.1E-05 29.5 2.6 23 4-26 36-58 (218)
469 2xdn_A HTH-type transcriptiona 73.5 2 6.8E-05 29.6 2.4 23 4-26 30-52 (210)
470 3anp_C Transcriptional repress 73.3 2.1 7.3E-05 29.3 2.6 23 4-26 28-50 (204)
471 3isp_A HTH-type transcriptiona 73.3 1.6 5.5E-05 31.9 2.0 29 7-35 22-51 (303)
472 3dew_A Transcriptional regulat 73.2 1.8 6E-05 29.4 2.1 23 4-26 27-49 (206)
473 2k9s_A Arabinose operon regula 73.2 3.2 0.00011 25.8 3.2 26 4-29 19-44 (107)
474 2f07_A YVDT; helix-turn-helix, 73.2 2.2 7.4E-05 29.2 2.6 23 4-26 29-51 (197)
475 3knw_A Putative transcriptiona 73.0 2.2 7.5E-05 29.1 2.6 23 4-26 33-55 (212)
476 3ppb_A Putative TETR family tr 72.9 2.2 7.5E-05 28.6 2.5 23 4-26 28-50 (195)
477 3bqz_B HTH-type transcriptiona 72.6 2.2 7.4E-05 28.7 2.4 23 4-26 21-43 (194)
478 2csf_A DNA-binding protein SAT 72.5 1.2 4.2E-05 27.9 1.0 25 3-27 32-57 (101)
479 2i10_A Putative TETR transcrip 72.2 2.4 8.1E-05 29.2 2.6 23 4-26 30-52 (202)
480 1bja_A Transcription regulator 72.2 1.5 5.1E-05 27.4 1.4 50 5-58 30-80 (95)
481 3f0c_A TETR-molecule A, transc 72.2 2.4 8E-05 29.2 2.6 23 4-26 30-52 (216)
482 2h9b_A HTH-type transcriptiona 71.9 0.78 2.7E-05 33.9 0.0 23 7-29 17-39 (312)
483 1pb6_A Hypothetical transcript 71.9 2.3 7.7E-05 29.1 2.4 23 4-26 37-59 (212)
484 3f1b_A TETR-like transcription 71.9 2.3 7.8E-05 28.8 2.4 23 4-26 33-55 (203)
485 3r1f_A ESX-1 secretion-associa 71.9 3.1 0.00011 27.5 3.0 23 4-26 25-52 (135)
486 1vi0_A Transcriptional regulat 71.8 2 6.7E-05 29.7 2.1 23 4-26 27-49 (206)
487 2qtq_A Transcriptional regulat 71.8 2.4 8.2E-05 28.9 2.5 23 4-26 35-57 (213)
488 3loc_A HTH-type transcriptiona 71.7 1.4 4.8E-05 30.1 1.3 23 4-26 37-59 (212)
489 3cwr_A Transcriptional regulat 71.6 2 6.9E-05 29.2 2.1 23 4-26 36-58 (208)
490 3bhq_A Transcriptional regulat 71.5 2.5 8.5E-05 29.2 2.6 23 4-26 31-53 (211)
491 2gen_A Probable transcriptiona 71.5 2.4 8.3E-05 29.0 2.5 23 4-26 26-48 (197)
492 3dpj_A Transcription regulator 71.4 2.5 8.7E-05 28.5 2.6 23 4-26 27-49 (194)
493 2g7s_A Transcriptional regulat 71.4 2 6.8E-05 28.8 2.0 23 4-26 27-49 (194)
494 1ui5_A A-factor receptor homol 71.3 2.5 8.6E-05 29.4 2.6 23 4-26 28-50 (215)
495 2hyt_A TETR-family transcripti 71.3 2.4 8.3E-05 28.9 2.4 23 4-26 31-53 (197)
496 3b81_A Transcriptional regulat 71.2 1.9 6.5E-05 29.3 1.9 22 4-25 30-51 (203)
497 3fzv_A Probable transcriptiona 71.1 2 6.8E-05 31.3 2.1 23 7-29 20-42 (306)
498 3dcf_A Transcriptional regulat 71.1 2.6 8.8E-05 28.9 2.6 23 4-26 50-72 (218)
499 2ibd_A Possible transcriptiona 71.0 2.4 8.3E-05 29.0 2.4 23 4-26 33-55 (204)
500 2awi_A PRGX; repressor, pherom 70.9 2.4 8.1E-05 32.1 2.5 23 3-26 14-36 (317)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1.4e-24 Score=136.33 Aligned_cols=67 Identities=33% Similarity=0.426 Sum_probs=63.3
Q ss_pred ccccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCCCC
Q psy1904 95 KRKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPSVS 161 (163)
Q Consensus 95 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~~~ 161 (163)
.++.++.||.||..|+..||..|..++||+..++.+||..|+|++.+|+|||||||+|+|+..++-|
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ssg 80 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGPSSG 80 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccCCCC
Confidence 4567889999999999999999999999999999999999999999999999999999999988765
No 2
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.89 E-value=6.2e-24 Score=130.11 Aligned_cols=65 Identities=17% Similarity=0.281 Sum_probs=61.9
Q ss_pred ccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCCCC
Q psy1904 97 KQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPSVS 161 (163)
Q Consensus 97 ~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~~~ 161 (163)
+.++.|+.||..|+..||..|+.++||+..++.+||..+||++.+|++||||||+|+|+..++-|
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~G 70 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPSSG 70 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCTTCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999988765
No 3
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.89 E-value=4.8e-24 Score=133.96 Aligned_cols=67 Identities=25% Similarity=0.294 Sum_probs=62.9
Q ss_pred ccccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCCCC
Q psy1904 95 KRKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPSVS 161 (163)
Q Consensus 95 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~~~ 161 (163)
+.+.++.||.||.+|+..||..|..++||+..++.+||..|||++.+|++||||||+|+|+...+-|
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~sG 80 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPSSG 80 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhccCCC
Confidence 4567889999999999999999999999999999999999999999999999999999999887754
No 4
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.88 E-value=2.3e-23 Score=147.18 Aligned_cols=68 Identities=16% Similarity=0.233 Sum_probs=53.5
Q ss_pred ccccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCCCCC
Q psy1904 95 KRKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPSVSG 162 (163)
Q Consensus 95 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~~~~ 162 (163)
..+++|.||.||..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+||.....||
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~g 163 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAAGA 163 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC----
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCCCCC
Confidence 45678899999999999999999999999999999999999999999999999999999999887765
No 5
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.88 E-value=1.9e-23 Score=130.84 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=57.5
Q ss_pred cccccccCcCCHHHHHHHHHhccC----CCCCCHHHHHHHHHHhCCCccccccccccccccccc
Q psy1904 96 RKQRRSRTTFTSAQLEELEKSFQR----SHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLS 155 (163)
Q Consensus 96 ~~~rr~Rt~~t~~q~~~Le~~F~~----~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr 155 (163)
.+.+|.||.||.+|+..||..|+. ++||+..++++||..|||++.+|+|||||||+|+++
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 467889999999999999999999 999999999999999999999999999999999986
No 6
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=2.1e-23 Score=127.69 Aligned_cols=65 Identities=29% Similarity=0.478 Sum_probs=61.5
Q ss_pred ccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCCCC
Q psy1904 97 KQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPSVS 161 (163)
Q Consensus 97 ~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~~~ 161 (163)
+.++.|+.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+..++-|
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ssg 70 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGPSSG 70 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999887654
No 7
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.88 E-value=2.1e-23 Score=130.44 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=56.7
Q ss_pred ccccccccCcCCHHHHHHHHHhccC-----CCCCCHHHHHHHHHHhCCCccccccccccccccccc
Q psy1904 95 KRKQRRSRTTFTSAQLEELEKSFQR-----SHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLS 155 (163)
Q Consensus 95 ~~~~rr~Rt~~t~~q~~~Le~~F~~-----~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr 155 (163)
..+.+|.||.||.+|+..|| .|.. ++||+..++++||..|+|++.+|+|||||||+|+++
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 34578899999999999999 8999 999999999999999999999999999999999986
No 8
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.87 E-value=3.9e-23 Score=130.90 Aligned_cols=65 Identities=23% Similarity=0.320 Sum_probs=60.8
Q ss_pred cccccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCC
Q psy1904 94 LKRKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLP 158 (163)
Q Consensus 94 ~~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~ 158 (163)
...+.++.||.||..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+|+...
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 34567889999999999999999999999999999999999999999999999999999998754
No 9
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.87 E-value=2.1e-24 Score=135.84 Aligned_cols=71 Identities=55% Similarity=0.845 Sum_probs=60.5
Q ss_pred CccccccccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCCC
Q psy1904 90 PGIVLKRKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPSV 160 (163)
Q Consensus 90 ~~~~~~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~~ 160 (163)
++....++.++.|+.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|++..++
T Consensus 10 ~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~~~ 80 (81)
T 1fjl_A 10 PGIALKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHTSV 80 (81)
T ss_dssp -------CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcccC
Confidence 33334567788999999999999999999999999999999999999999999999999999999876543
No 10
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.87 E-value=1.9e-23 Score=127.98 Aligned_cols=66 Identities=26% Similarity=0.282 Sum_probs=62.2
Q ss_pred cccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCCCC
Q psy1904 96 RKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPSVS 161 (163)
Q Consensus 96 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~~~ 161 (163)
.+.++.|+.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+..++-|
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~~g 70 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPSSG 70 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccccCC
Confidence 356789999999999999999999999999999999999999999999999999999999988765
No 11
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.87 E-value=5.6e-23 Score=145.60 Aligned_cols=143 Identities=16% Similarity=0.240 Sum_probs=85.6
Q ss_pred ccCCCChhhhHH-HhhcchhhHHHHHhhhhhccCCCCCCCCCCCCCcCChHHHHHHHHHHHhCCCCCchhhhhhhhhhcc
Q psy1904 2 AAAGVRPCVISR-QLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPNITSWEVRDKLIKVSR 80 (163)
Q Consensus 2 ~~~g~~~~~ia~-~~~vs~~~vs~~l~~~~~tG~~~Pg~~Gg~~p~~~~~~~~~~i~~~~~~~p~~~~~e~~~~l~~~~~ 80 (163)
...++++...|. +||+|+++++.+|....+...+..| ..+ ....-.++ . .|. +-+........
T Consensus 18 ~~~~i~q~~fa~~ilg~sq~~ls~~l~~pkpw~~l~~g----~~~---y~rm~~WL----~-~pe----~~r~~~l~~~~ 81 (164)
T 2d5v_A 18 KRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSG----RET---FRRMWKWL----Q-EPE----FQRMSALRLAA 81 (164)
T ss_dssp HHTTCCHHHHHHHHTSCCHHHHHHHHHSCCCGGGCSTT----HHH---HHHHHHHH----H-SCH----HHHHHHTTC--
T ss_pred HHcCCchHHHHHHHhcCCchhHHHHcCCCCCHHHHccc----chH---HHHHHHHH----h-ccc----hhhhhhhhccc
Confidence 457889999998 8899999999999766544444321 100 00011111 0 000 00000000000
Q ss_pred CCCCCCCCCCccccccccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCCC
Q psy1904 81 LDDSDTESEPGIVLKRKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPSV 160 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~~ 160 (163)
+.. ...........+.+|.||.||..|+..|+..|+.++||+..++.+||..+||++.||+|||||||+|+|+....+
T Consensus 82 ~~~--~~~~~~~~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~~ 159 (164)
T 2d5v_A 82 CKR--KEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLEH 159 (164)
T ss_dssp --------------------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC----
T ss_pred ccc--cccccCCcCCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCCC
Confidence 000 001111122345678999999999999999999999999999999999999999999999999999999988766
Q ss_pred CC
Q psy1904 161 SG 162 (163)
Q Consensus 161 ~~ 162 (163)
++
T Consensus 160 ~~ 161 (164)
T 2d5v_A 160 HH 161 (164)
T ss_dssp --
T ss_pred CC
Confidence 54
No 12
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.5e-23 Score=127.40 Aligned_cols=65 Identities=40% Similarity=0.538 Sum_probs=61.4
Q ss_pred ccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCCCC
Q psy1904 97 KQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPSVS 161 (163)
Q Consensus 97 ~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~~~ 161 (163)
+.++.|+.||.+|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+..++-|
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~~~G 70 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGPSSG 70 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTSTTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCCCCC
Confidence 46788999999999999999999999999999999999999999999999999999999887654
No 13
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.86 E-value=4.4e-23 Score=123.41 Aligned_cols=60 Identities=20% Similarity=0.317 Sum_probs=52.9
Q ss_pred ccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccC
Q psy1904 97 KQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSC 156 (163)
Q Consensus 97 ~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~ 156 (163)
+.++.||.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 357889999999999999999999999999999999999999999999999999999874
No 14
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=4.3e-23 Score=126.36 Aligned_cols=65 Identities=23% Similarity=0.264 Sum_probs=60.8
Q ss_pred cccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCCC
Q psy1904 96 RKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPSV 160 (163)
Q Consensus 96 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~~ 160 (163)
.+.++.||.||.+|+..||..|+.++||+..++.+||..+||++.+|++||||||+|+|+....-
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPSS 69 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcccC
Confidence 35678999999999999999999999999999999999999999999999999999999987643
No 15
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.86 E-value=4.5e-23 Score=122.96 Aligned_cols=58 Identities=24% Similarity=0.500 Sum_probs=53.2
Q ss_pred cccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCccccccccccccccccc
Q psy1904 98 QRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLS 155 (163)
Q Consensus 98 ~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr 155 (163)
.++.||.||..|+..||..|+.++||+..++.+||..+||++.+|++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4788999999999999999999999999999999999999999999999999999987
No 16
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.86 E-value=5.8e-23 Score=148.13 Aligned_cols=127 Identities=18% Similarity=0.252 Sum_probs=80.8
Q ss_pred ccCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCCCCCCCcCChHHHHHHHHHHHhCCCCCchhhhhh------h
Q psy1904 2 AAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPNITSWEVRDK------L 75 (163)
Q Consensus 2 ~~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~Gg~~p~~~~~~~~~~i~~~~~~~p~~~~~e~~~~------l 75 (163)
.+.|+++.++|+.+|||+++||+|++. | ..+. ...... ++.|-++.. +
T Consensus 40 ~~~gitQ~~lA~~~GiSqs~ISr~l~~----~---------~~~~---~~kraa----------ly~W~~~~~~~i~~~~ 93 (194)
T 1ic8_A 40 QQHNIPQREVVDTTGLNQSHLSQHLNK----G---------TPMK---TQKRAA----------LYTWYVRKQREVAQQF 93 (194)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHHHS----B---------CCCC---HHHHHH----------HHHHHHHHTTTTHHHH
T ss_pred HHcCCCHHHHHHHhCCChHHHHHHHhc----C---------cccc---cccccc----------chhhHHHhhhhhhccc
Confidence 357999999999999999999999732 1 1111 110111 111211110 0
Q ss_pred hhhccCCCCCCCCCCccccccccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhC-------------------
Q psy1904 76 IKVSRLDDSDTESEPGIVLKRKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFG------------------- 136 (163)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~------------------- 136 (163)
.. ...+....+........++.||.|+.|++.|+.+|++.|+.++||+..+|++||..++
T Consensus 94 ~~-~~~~~~~~~~~~~~~~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~ 172 (194)
T 1ic8_A 94 TH-AGQGGLIEEPTGDELPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGS 172 (194)
T ss_dssp CC-C--------------------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGG
T ss_pred cC-CCCCCCCCCCcccccccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccc
Confidence 00 0000001111111223466789999999999999999999999999999999999999
Q ss_pred --CCccccccccccccccccc
Q psy1904 137 --MTETRVQQFVLGTAGFLLS 155 (163)
Q Consensus 137 --l~~~~v~~WFqnrR~k~kr 155 (163)
|++.+|++||||||++.|.
T Consensus 173 ~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 173 NLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp GCCCHHHHHHHHHHHHHHCC-
T ss_pred cccCccccchhchhhhhhhhc
Confidence 9999999999999999863
No 17
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.85 E-value=1.5e-22 Score=122.58 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=58.5
Q ss_pred ccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCC
Q psy1904 97 KQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLP 158 (163)
Q Consensus 97 ~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~ 158 (163)
+.++.||.||.+|+..||..|+.++||+..++..||..+||++.+|++||||||+|+|+...
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 35788999999999999999999999999999999999999999999999999999998653
No 18
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=6.9e-23 Score=125.42 Aligned_cols=65 Identities=23% Similarity=0.315 Sum_probs=60.8
Q ss_pred ccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCCCC
Q psy1904 97 KQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPSVS 161 (163)
Q Consensus 97 ~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~~~ 161 (163)
+.++.|+.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+..++-|
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~~sG 70 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPSSG 70 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCCCCC
Confidence 35678999999999999999999999999999999999999999999999999999999877654
No 19
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.85 E-value=1.5e-22 Score=124.80 Aligned_cols=65 Identities=17% Similarity=0.285 Sum_probs=60.6
Q ss_pred cccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCCC
Q psy1904 96 RKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPSV 160 (163)
Q Consensus 96 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~~ 160 (163)
.+.++.|+.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKL 69 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhccc
Confidence 35678999999999999999999999999999999999999999999999999999999976543
No 20
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.85 E-value=7.4e-23 Score=122.77 Aligned_cols=59 Identities=31% Similarity=0.332 Sum_probs=55.6
Q ss_pred cccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccC
Q psy1904 98 QRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSC 156 (163)
Q Consensus 98 ~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~ 156 (163)
.++.|+.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 57889999999999999999999999999999999999999999999999999999875
No 21
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.85 E-value=6.5e-22 Score=139.42 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=55.1
Q ss_pred ccccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccC
Q psy1904 95 KRKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSC 156 (163)
Q Consensus 95 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~ 156 (163)
..+++|.||.||..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+||.
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 34678899999999999999999999999999999999999999999999999999999985
No 22
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.85 E-value=1e-22 Score=126.93 Aligned_cols=62 Identities=31% Similarity=0.366 Sum_probs=58.4
Q ss_pred ccccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccC
Q psy1904 95 KRKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSC 156 (163)
Q Consensus 95 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~ 156 (163)
+++.++.||.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+.
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~ 67 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhh
Confidence 34567889999999999999999999999999999999999999999999999999999864
No 23
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.85 E-value=1e-22 Score=120.24 Aligned_cols=57 Identities=32% Similarity=0.494 Sum_probs=55.1
Q ss_pred ccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCccccccccccccccccc
Q psy1904 99 RRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLS 155 (163)
Q Consensus 99 rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr 155 (163)
++.|+.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 478999999999999999999999999999999999999999999999999999986
No 24
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=1.9e-22 Score=126.58 Aligned_cols=64 Identities=39% Similarity=0.548 Sum_probs=59.8
Q ss_pred cccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCC
Q psy1904 96 RKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPS 159 (163)
Q Consensus 96 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~ 159 (163)
.+.++.|+.||..|+..||..|+.++||+..++.+||..++|++.+|++||||||+|+|+....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 3567899999999999999999999999999999999999999999999999999999886543
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.85 E-value=6e-23 Score=124.96 Aligned_cols=64 Identities=23% Similarity=0.270 Sum_probs=59.7
Q ss_pred cccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCCCC
Q psy1904 98 QRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPSVS 161 (163)
Q Consensus 98 ~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~~~ 161 (163)
.++.||.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+.....+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 65 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTKG 65 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccccC
Confidence 4688999999999999999999999999999999999999999999999999999998766544
No 26
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.85 E-value=1.3e-21 Score=135.78 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=55.8
Q ss_pred ccccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccC
Q psy1904 95 KRKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSC 156 (163)
Q Consensus 95 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~ 156 (163)
.+++++.||.||..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+||.
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 44667889999999999999999999999999999999999999999999999999999985
No 27
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.85 E-value=2.4e-22 Score=124.61 Aligned_cols=65 Identities=51% Similarity=0.671 Sum_probs=60.7
Q ss_pred ccccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCC
Q psy1904 95 KRKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPS 159 (163)
Q Consensus 95 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~ 159 (163)
..+.++.||.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+....
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhh
Confidence 34567889999999999999999999999999999999999999999999999999999987664
No 28
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.85 E-value=1.1e-22 Score=120.84 Aligned_cols=58 Identities=29% Similarity=0.350 Sum_probs=55.5
Q ss_pred ccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccC
Q psy1904 99 RRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSC 156 (163)
Q Consensus 99 rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~ 156 (163)
++.||.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999875
No 29
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.85 E-value=1.7e-22 Score=125.87 Aligned_cols=62 Identities=26% Similarity=0.285 Sum_probs=58.4
Q ss_pred ccccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccC
Q psy1904 95 KRKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSC 156 (163)
Q Consensus 95 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~ 156 (163)
.++.++.|+.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+.
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 34567899999999999999999999999999999999999999999999999999999874
No 30
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=2.4e-22 Score=126.12 Aligned_cols=60 Identities=40% Similarity=0.672 Sum_probs=57.3
Q ss_pred ccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccC
Q psy1904 97 KQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSC 156 (163)
Q Consensus 97 ~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~ 156 (163)
+.++.||.||..|+..||..|..++||+..++.+||..++|++.+|++||||||+|+|+.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 65 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999864
No 31
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.84 E-value=1.5e-22 Score=124.22 Aligned_cols=63 Identities=17% Similarity=0.203 Sum_probs=59.1
Q ss_pred ccccCcCCHHHHHHHHHhc-cCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCCCC
Q psy1904 99 RRSRTTFTSAQLEELEKSF-QRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPSVS 161 (163)
Q Consensus 99 rr~Rt~~t~~q~~~Le~~F-~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~~~ 161 (163)
.+.|..++..|+..||..| ..++||+..++.+||..+||++.||+|||||||+|+|+.+.+.|
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~~s~g 72 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSGPSSG 72 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCCCCCC
Confidence 4566778899999999999 99999999999999999999999999999999999999998876
No 32
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.84 E-value=2.9e-22 Score=121.95 Aligned_cols=59 Identities=29% Similarity=0.363 Sum_probs=56.6
Q ss_pred cccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccC
Q psy1904 98 QRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSC 156 (163)
Q Consensus 98 ~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~ 156 (163)
.++.||.||..|+..||..|..++||+..++..||..+||++.+|++||||||+|+|++
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~ 60 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ 60 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999874
No 33
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.84 E-value=3.4e-22 Score=125.61 Aligned_cols=61 Identities=30% Similarity=0.388 Sum_probs=54.9
Q ss_pred ccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCC
Q psy1904 97 KQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCL 157 (163)
Q Consensus 97 ~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~ 157 (163)
+.++.||.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|++.
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 4678899999999999999999999999999999999999999999999999999999875
No 34
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.84 E-value=4.6e-22 Score=126.98 Aligned_cols=62 Identities=24% Similarity=0.287 Sum_probs=55.6
Q ss_pred cccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCC
Q psy1904 96 RKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCL 157 (163)
Q Consensus 96 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~ 157 (163)
.+.++.||.||..|+..||..|+.++||+..++.+||..+||++.+|+|||||||+|+|+..
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 35678999999999999999999999999999999999999999999999999999999864
No 35
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.84 E-value=3e-22 Score=121.83 Aligned_cols=62 Identities=27% Similarity=0.364 Sum_probs=58.6
Q ss_pred cccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCC
Q psy1904 98 QRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPS 159 (163)
Q Consensus 98 ~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~ 159 (163)
.++.||.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 46889999999999999999999999999999999999999999999999999999987653
No 36
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.84 E-value=5.5e-22 Score=117.05 Aligned_cols=57 Identities=28% Similarity=0.402 Sum_probs=54.6
Q ss_pred cccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccc
Q psy1904 98 QRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLL 154 (163)
Q Consensus 98 ~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~k 154 (163)
.++.|+.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467899999999999999999999999999999999999999999999999999975
No 37
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.84 E-value=3.5e-22 Score=128.68 Aligned_cols=62 Identities=31% Similarity=0.429 Sum_probs=58.5
Q ss_pred ccccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccC
Q psy1904 95 KRKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSC 156 (163)
Q Consensus 95 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~ 156 (163)
+.+.++.||.||..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+|++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 75 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQ 75 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhh
Confidence 34567899999999999999999999999999999999999999999999999999999875
No 38
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.84 E-value=3e-22 Score=119.35 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=48.5
Q ss_pred cccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccc
Q psy1904 96 RKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLL 154 (163)
Q Consensus 96 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~k 154 (163)
.+.++.|+.||..|+..||..|..++||+..++.+||..+||++.||++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45678899999999999999999999999999999999999999999999999999975
No 39
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.84 E-value=7.1e-22 Score=119.89 Aligned_cols=60 Identities=35% Similarity=0.468 Sum_probs=57.4
Q ss_pred ccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCC
Q psy1904 99 RRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLP 158 (163)
Q Consensus 99 rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~ 158 (163)
++.|+.||..|+..||..|..++||+..++..||..+||++.+|++||||||+|+|+...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 678999999999999999999999999999999999999999999999999999998654
No 40
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.84 E-value=1.3e-22 Score=123.44 Aligned_cols=63 Identities=41% Similarity=0.528 Sum_probs=58.9
Q ss_pred ccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCC
Q psy1904 97 KQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPS 159 (163)
Q Consensus 97 ~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~ 159 (163)
+.++.||.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+....
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 357889999999999999999999999999999999999999999999999999999886543
No 41
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.83 E-value=8e-22 Score=117.38 Aligned_cols=55 Identities=20% Similarity=0.182 Sum_probs=51.8
Q ss_pred HHHHHHHHHhc-cCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCCCC
Q psy1904 107 SAQLEELEKSF-QRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPSVS 161 (163)
Q Consensus 107 ~~q~~~Le~~F-~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~~~ 161 (163)
+.|+.+||..| ..++||+..++.+||.+|||++.||+|||||||+|+|++.||-|
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~~~~~ 64 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSGPSSG 64 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSSCCCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCCCCC
Confidence 45799999999 67999999999999999999999999999999999999999865
No 42
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.3e-22 Score=126.18 Aligned_cols=61 Identities=16% Similarity=0.124 Sum_probs=57.9
Q ss_pred cccccccCcCCHHHHHHHHHhccCC----CCCCHHHHHHHHHHhCCCcccccccccccccccccC
Q psy1904 96 RKQRRSRTTFTSAQLEELEKSFQRS----HYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSC 156 (163)
Q Consensus 96 ~~~rr~Rt~~t~~q~~~Le~~F~~~----~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~ 156 (163)
.+.++.||.||.+|+..||..|+.+ +||+..++.+||..+||++.+|+|||||||+|+|+.
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 4567899999999999999999999 999999999999999999999999999999999873
No 43
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.2e-22 Score=124.59 Aligned_cols=61 Identities=28% Similarity=0.388 Sum_probs=57.9
Q ss_pred ccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCC
Q psy1904 97 KQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCL 157 (163)
Q Consensus 97 ~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~ 157 (163)
+.++.||.||.+|+..||..|+.++||+..++.+||..+||++.+|++||||||+|+|++.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999998753
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=4.3e-22 Score=129.32 Aligned_cols=65 Identities=26% Similarity=0.247 Sum_probs=56.7
Q ss_pred cccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCCC
Q psy1904 96 RKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPSV 160 (163)
Q Consensus 96 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~~ 160 (163)
.+.++.||.||..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+|+...-+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~g 96 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREG 96 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhccC
Confidence 45678899999999999999999999999999999999999999999999999999999876543
No 45
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.83 E-value=5.3e-22 Score=117.89 Aligned_cols=57 Identities=51% Similarity=0.718 Sum_probs=50.7
Q ss_pred ccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCC
Q psy1904 101 SRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCL 157 (163)
Q Consensus 101 ~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~ 157 (163)
.|+.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|++.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 479999999999999999999999999999999999999999999999999999864
No 46
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=7.4e-22 Score=121.31 Aligned_cols=58 Identities=19% Similarity=0.124 Sum_probs=54.2
Q ss_pred cccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCC
Q psy1904 100 RSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCL 157 (163)
Q Consensus 100 r~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~ 157 (163)
..|+.||.+|+.+|+..|..++||+..++++||..+||++.||+|||||+|+|+|+..
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 3467799999999999999999999999999999999999999999999999998753
No 47
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.83 E-value=9.6e-22 Score=127.39 Aligned_cols=63 Identities=21% Similarity=0.201 Sum_probs=56.2
Q ss_pred ccccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCC
Q psy1904 95 KRKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCL 157 (163)
Q Consensus 95 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~ 157 (163)
....++.|+.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|++-
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 345668899999999999999999999999999999999999999999999999999999863
No 48
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.83 E-value=4.1e-22 Score=116.72 Aligned_cols=54 Identities=30% Similarity=0.396 Sum_probs=50.9
Q ss_pred CcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccC
Q psy1904 103 TTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSC 156 (163)
Q Consensus 103 t~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~ 156 (163)
|.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 689999999999999999999999999999999999999999999999999874
No 49
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.83 E-value=3e-21 Score=116.11 Aligned_cols=59 Identities=20% Similarity=0.218 Sum_probs=56.5
Q ss_pred cccccCcCCHHHHHHHHHhc---cCCCCCCHHHHHHHHHHhCCCcccccccccccccccccC
Q psy1904 98 QRRSRTTFTSAQLEELEKSF---QRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSC 156 (163)
Q Consensus 98 ~rr~Rt~~t~~q~~~Le~~F---~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~ 156 (163)
.++.|+.|+..|+..|+..| ..++||+..++.+||..+||++.||++||||+|+|+|++
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 46889999999999999999 999999999999999999999999999999999999874
No 50
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.1e-21 Score=120.61 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=57.1
Q ss_pred ccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCC
Q psy1904 99 RRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPS 159 (163)
Q Consensus 99 rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~ 159 (163)
.+.|+.||.+|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+....
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhccc
Confidence 3458999999999999999999999999999999999999999999999999999986654
No 51
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.82 E-value=2.5e-21 Score=119.68 Aligned_cols=62 Identities=19% Similarity=0.195 Sum_probs=58.5
Q ss_pred cccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCC
Q psy1904 98 QRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPS 159 (163)
Q Consensus 98 ~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~ 159 (163)
.++.|+.||.+|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+.-.+
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcC
Confidence 46789999999999999999999999999999999999999999999999999999987654
No 52
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.82 E-value=9e-21 Score=138.05 Aligned_cols=61 Identities=26% Similarity=0.336 Sum_probs=53.7
Q ss_pred ccccccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhC---------------------CCccccccccccccc
Q psy1904 93 VLKRKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFG---------------------MTETRVQQFVLGTAG 151 (163)
Q Consensus 93 ~~~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~---------------------l~~~~v~~WFqnrR~ 151 (163)
...++.||.|+.|++.|+.+|+..|+.++||+..+|++||..++ |++.+|++||+|||+
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 34567889999999999999999999999999999999999987 899999999999998
Q ss_pred cc
Q psy1904 152 FL 153 (163)
Q Consensus 152 k~ 153 (163)
..
T Consensus 217 ~~ 218 (221)
T 2h8r_A 217 EE 218 (221)
T ss_dssp TC
T ss_pred hh
Confidence 75
No 53
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.82 E-value=1.9e-21 Score=119.65 Aligned_cols=59 Identities=25% Similarity=0.269 Sum_probs=55.5
Q ss_pred ccccCcCCHHHHHHHHHhccC-CCCCCHHHHHHHHHHhCCCcccccccccccccccccCC
Q psy1904 99 RRSRTTFTSAQLEELEKSFQR-SHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCL 157 (163)
Q Consensus 99 rr~Rt~~t~~q~~~Le~~F~~-~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~ 157 (163)
.+.|+.||..|+..||..|+. ++||+..++.+||..+||++.+|++||||||+|+|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 467899999999999999996 99999999999999999999999999999999998754
No 54
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=2.7e-21 Score=119.24 Aligned_cols=65 Identities=14% Similarity=0.227 Sum_probs=59.7
Q ss_pred cccccccCcCCHHHHHHHHHhccC---CCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCCC
Q psy1904 96 RKQRRSRTTFTSAQLEELEKSFQR---SHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPSV 160 (163)
Q Consensus 96 ~~~rr~Rt~~t~~q~~~Le~~F~~---~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~~ 160 (163)
.+.++.|+.|+..|+..|+..|.. ++||+..++.+||..+||++.||++||||+|+|+|+.+..-
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 72 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPSS 72 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccccc
Confidence 346788999999999999999976 99999999999999999999999999999999999887643
No 55
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.82 E-value=2.5e-21 Score=119.38 Aligned_cols=59 Identities=24% Similarity=0.200 Sum_probs=55.5
Q ss_pred ccccCcCCHHHHHHHHHhcc-CCCCCCHHHHHHHHHHhCCCcccccccccccccccccCC
Q psy1904 99 RRSRTTFTSAQLEELEKSFQ-RSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCL 157 (163)
Q Consensus 99 rr~Rt~~t~~q~~~Le~~F~-~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~ 157 (163)
.+.|+.||..|+..||..|+ .++||+..++.+||..+||++.+|++||||||+|+|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999 599999999999999999999999999999999998753
No 56
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=4.6e-21 Score=118.70 Aligned_cols=60 Identities=17% Similarity=0.122 Sum_probs=55.7
Q ss_pred cccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCC
Q psy1904 100 RSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPS 159 (163)
Q Consensus 100 r~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~ 159 (163)
++|+.||.+|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+....
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 456779999999999999999999999999999999999999999999999999886544
No 57
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.81 E-value=9.1e-21 Score=132.87 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=57.4
Q ss_pred cccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccC
Q psy1904 96 RKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSC 156 (163)
Q Consensus 96 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~ 156 (163)
.+++|.||.|+..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3567889999999999999999999999999999999999999999999999999999985
No 58
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.81 E-value=2e-21 Score=135.81 Aligned_cols=60 Identities=22% Similarity=0.339 Sum_probs=57.5
Q ss_pred cccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCccccccccccccccccc
Q psy1904 96 RKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLS 155 (163)
Q Consensus 96 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr 155 (163)
.+++|.|+.|+..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 456789999999999999999999999999999999999999999999999999999987
No 59
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=7e-21 Score=112.77 Aligned_cols=65 Identities=20% Similarity=0.263 Sum_probs=59.0
Q ss_pred cccccccCcCCHHHHHHHHHhccC-CCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCCC
Q psy1904 96 RKQRRSRTTFTSAQLEELEKSFQR-SHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPSV 160 (163)
Q Consensus 96 ~~~rr~Rt~~t~~q~~~Le~~F~~-~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~~ 160 (163)
+..+|.||.|+.+|+..|+..|+. ++||+...+..||.++||++.+|+|||||+|.-.+-.-++-
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~~~~~~ 70 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGPSS 70 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSSCSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecCCCCCC
Confidence 356899999999999999999999 99999999999999999999999999999998776555543
No 60
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.81 E-value=9.5e-21 Score=116.78 Aligned_cols=62 Identities=26% Similarity=0.343 Sum_probs=58.6
Q ss_pred ccccCcCCHHHHHHHHHhc---cCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCCC
Q psy1904 99 RRSRTTFTSAQLEELEKSF---QRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPSV 160 (163)
Q Consensus 99 rr~Rt~~t~~q~~~Le~~F---~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~~ 160 (163)
++.|+.|+..|+..|+..| ..++||+..++..||..+||++.||++||||+|+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 5789999999999999999 9999999999999999999999999999999999999877643
No 61
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.80 E-value=1.4e-20 Score=122.02 Aligned_cols=63 Identities=25% Similarity=0.331 Sum_probs=53.8
Q ss_pred ccccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHH------------------hC---CCccccccccccccccc
Q psy1904 95 KRKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANK------------------FG---MTETRVQQFVLGTAGFL 153 (163)
Q Consensus 95 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~------------------l~---l~~~~v~~WFqnrR~k~ 153 (163)
.++.+|.|+.|+..|+..||..|+.++||+..+|++||.. || |++.+|++||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 4567889999999999999999999999999999999999 88 99999999999999999
Q ss_pred ccCC
Q psy1904 154 LSCL 157 (163)
Q Consensus 154 kr~~ 157 (163)
|+..
T Consensus 86 k~k~ 89 (99)
T 1lfb_A 86 AFRH 89 (99)
T ss_dssp SCCC
T ss_pred HHhc
Confidence 7653
No 62
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.79 E-value=1.5e-20 Score=111.62 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=53.4
Q ss_pred cCcCCHHHHHHHHHhccC---CCCCCHHHHHHHHHHhCCCcccccccccccccccccC
Q psy1904 102 RTTFTSAQLEELEKSFQR---SHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSC 156 (163)
Q Consensus 102 Rt~~t~~q~~~Le~~F~~---~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~ 156 (163)
|+.|+..|+..||..|.. ++||+..++.+||..+||++.||++||||||+|+|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 689999999999999999 9999999999999999999999999999999999986
No 63
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=8.2e-21 Score=122.80 Aligned_cols=62 Identities=26% Similarity=0.334 Sum_probs=58.5
Q ss_pred cccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhC---------------CCcccccccccccccccccCC
Q psy1904 96 RKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFG---------------MTETRVQQFVLGTAGFLLSCL 157 (163)
Q Consensus 96 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~---------------l~~~~v~~WFqnrR~k~kr~~ 157 (163)
.+.+|.|+.|+..|+.+||..|+.++||+..++++||..++ |++.+|++||||||+|+|+..
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999999 999999999999999998754
No 64
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.79 E-value=7.9e-21 Score=112.88 Aligned_cols=50 Identities=20% Similarity=0.273 Sum_probs=48.7
Q ss_pred CHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCccccccccccccccccc
Q psy1904 106 TSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLS 155 (163)
Q Consensus 106 t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr 155 (163)
|.+|+.+||..|..++||+..++.+||..+||++.+|++||||||+|+|+
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhc
Confidence 68999999999999999999999999999999999999999999999986
No 65
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.79 E-value=3.1e-20 Score=112.69 Aligned_cols=57 Identities=25% Similarity=0.271 Sum_probs=53.5
Q ss_pred CcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCC
Q psy1904 103 TTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPS 159 (163)
Q Consensus 103 t~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~ 159 (163)
..+|..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+|+...+
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 467999999999999999999999999999999999999999999999999887654
No 66
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.2e-20 Score=120.62 Aligned_cols=60 Identities=23% Similarity=0.243 Sum_probs=56.9
Q ss_pred cccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHh---------------------CCCcccccccccccccccc
Q psy1904 96 RKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKF---------------------GMTETRVQQFVLGTAGFLL 154 (163)
Q Consensus 96 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l---------------------~l~~~~v~~WFqnrR~k~k 154 (163)
++.+|.||.|++.|+.+||..|+.++||+..+|++||..+ .|++.+|++||||||+++|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 4578899999999999999999999999999999999999 7999999999999999997
Q ss_pred c
Q psy1904 155 S 155 (163)
Q Consensus 155 r 155 (163)
+
T Consensus 84 r 84 (102)
T 2da6_A 84 F 84 (102)
T ss_dssp H
T ss_pred H
Confidence 6
No 67
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.79 E-value=2.1e-20 Score=119.06 Aligned_cols=60 Identities=27% Similarity=0.354 Sum_probs=56.6
Q ss_pred ccccCcCCHHHHHHHHHhc---cCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCC
Q psy1904 99 RRSRTTFTSAQLEELEKSF---QRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLP 158 (163)
Q Consensus 99 rr~Rt~~t~~q~~~Le~~F---~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~ 158 (163)
|+.|+.|+..|+..|+..| ..++||+..++.+||..+||++.||++||||||+|+|+...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 5789999999999999999 99999999999999999999999999999999999998754
No 68
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=2.6e-20 Score=118.22 Aligned_cols=53 Identities=17% Similarity=0.058 Sum_probs=51.1
Q ss_pred cCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccC
Q psy1904 104 TFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSC 156 (163)
Q Consensus 104 ~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~ 156 (163)
.||.+|+.+||..|..++||+..++.+||..|||++.||+|||||||+||++.
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~ 69 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 69 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHH
Confidence 78999999999999999999999999999999999999999999999999763
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=9.4e-20 Score=109.21 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=50.8
Q ss_pred CcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccC
Q psy1904 103 TTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSC 156 (163)
Q Consensus 103 t~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~ 156 (163)
..++..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|.++.
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 456789999999999999999999999999999999999999999999998774
No 70
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.77 E-value=5.6e-20 Score=117.00 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=55.7
Q ss_pred ccccccCcCCHHHHHHHHHhccC---CCCCCHHHHHHHHHHhCCCccccccccccccccccc
Q psy1904 97 KQRRSRTTFTSAQLEELEKSFQR---SHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLS 155 (163)
Q Consensus 97 ~~rr~Rt~~t~~q~~~Le~~F~~---~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr 155 (163)
++++.|+.|+..|+..|+..|.. ++||+..++.+||..+||++.||++||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 45667999999999999999999 999999999999999999999999999999999874
No 71
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.77 E-value=6.6e-20 Score=115.63 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=54.7
Q ss_pred cccCcCCHHHHHHHHHhccC---CCCCCHHHHHHHHHHhCCCcccccccccccccccccCCC
Q psy1904 100 RSRTTFTSAQLEELEKSFQR---SHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLP 158 (163)
Q Consensus 100 r~Rt~~t~~q~~~Le~~F~~---~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~ 158 (163)
+.|+.|+..|+..|+..|.. ++||+..++.+||..+||++.||++||||||+|+|+...
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 44667999999999999999 999999999999999999999999999999999998754
No 72
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=8.7e-20 Score=116.46 Aligned_cols=54 Identities=19% Similarity=0.205 Sum_probs=51.3
Q ss_pred cCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccccCC
Q psy1904 104 TFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCL 157 (163)
Q Consensus 104 ~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~ 157 (163)
.||.+|+.+||..|..++||+..++.+||..+||++.+|+|||||||+|+++.-
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 489999999999999999999999999999999999999999999999997644
No 73
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.77 E-value=5.2e-20 Score=116.05 Aligned_cols=61 Identities=10% Similarity=0.276 Sum_probs=56.3
Q ss_pred ccccccCcCCHHHHHHHHHhccC---CCCCCHHHHHHHHHHhCCCcccccccccccccccccCC
Q psy1904 97 KQRRSRTTFTSAQLEELEKSFQR---SHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCL 157 (163)
Q Consensus 97 ~~rr~Rt~~t~~q~~~Le~~F~~---~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~ 157 (163)
+.++.|+.|+.+|+..|+..|.. ++||+..++.+||..+||++.||++||||+|+|+|+.+
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 46788999999999999999876 69999999999999999999999999999999998654
No 74
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=2.9e-18 Score=103.70 Aligned_cols=57 Identities=14% Similarity=0.225 Sum_probs=50.9
Q ss_pred cCCHHHHHHHHHhcc---CCCCCCHHHHHHHHHHhCCCcccccccccccccccccCCCCC
Q psy1904 104 TFTSAQLEELEKSFQ---RSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSCLPSV 160 (163)
Q Consensus 104 ~~t~~q~~~Le~~F~---~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~~~~~ 160 (163)
.|+.+|+..|+..|. .++||+..++.+||..+||++.||++||||+|+|+|+.+-.-
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 63 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQ 63 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC---
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHH
Confidence 689999999999999 999999999999999999999999999999999999887543
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.7e-15 Score=90.31 Aligned_cols=47 Identities=9% Similarity=0.141 Sum_probs=44.8
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCccccccccccccccc
Q psy1904 107 SAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFL 153 (163)
Q Consensus 107 ~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~ 153 (163)
.+|+..|+..|..|++|+..++..||..+||+...|+|||||||+..
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 56899999999999999999999999999999999999999999864
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.50 E-value=1.8e-15 Score=95.33 Aligned_cols=54 Identities=13% Similarity=0.220 Sum_probs=50.2
Q ss_pred CcCCHHHHHHHHHhccC---CCCCCHHHHHHHHHHhCCCcccccccccccccccccC
Q psy1904 103 TTFTSAQLEELEKSFQR---SHYPDIYTREALANKFGMTETRVQQFVLGTAGFLLSC 156 (163)
Q Consensus 103 t~~t~~q~~~Le~~F~~---~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~kr~ 156 (163)
.-|+.++..+|+..|.. ++||+..++.+||..+||++.||++||+|+|+|+++.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~ 66 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPD 66 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhH
Confidence 45889999999999977 9999999999999999999999999999999999764
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.46 E-value=8.1e-15 Score=116.68 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=54.7
Q ss_pred ccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccccccccc
Q psy1904 97 KQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFLL 154 (163)
Q Consensus 97 ~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~k~k 154 (163)
..++.++.|+..|+..|++.|+.++||+..+|.+||.++||+++||++||||||+|+|
T Consensus 364 ~~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 364 AQTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3456788999999999999999999999999999999999999999999999999986
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=99.03 E-value=2.6e-11 Score=63.54 Aligned_cols=17 Identities=0% Similarity=-0.115 Sum_probs=15.4
Q ss_pred ccccccccccccccccC
Q psy1904 140 TRVQQFVLGTAGFLLSC 156 (163)
Q Consensus 140 ~~v~~WFqnrR~k~kr~ 156 (163)
+||+|||||||+|||+.
T Consensus 1 rQVkIWFQNRRaK~Kk~ 17 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKR 17 (37)
T ss_dssp CCTTTTTTCSHHHHTSS
T ss_pred CCceeccHHHHHHHHHH
Confidence 58999999999999874
No 79
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=98.95 E-value=2.1e-09 Score=74.15 Aligned_cols=75 Identities=71% Similarity=1.233 Sum_probs=64.2
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCCCCCCCcCChHHHHHHHHHHHhCCCCCchhhhhhhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPNITSWEVRDKLIK 77 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~Gg~~p~~~~~~~~~~i~~~~~~~p~~~~~e~~~~l~~ 77 (163)
..|.+..+||+.||||.+||++|+++|.+.|.+.+...+|..+...++...+.|.++..++|..+.+++...+..
T Consensus 46 ~~G~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~ 120 (149)
T 1k78_A 46 HQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA 120 (149)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCcchhHHHHHHHHHH
Confidence 479999999999999999999999999999998887666655666677778888888889999999988888754
No 80
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=98.94 E-value=1.1e-09 Score=72.95 Aligned_cols=75 Identities=80% Similarity=1.391 Sum_probs=63.0
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCCCCCCCcCChHHHHHHHHHHHhCCCCCchhhhhhhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPNITSWEVRDKLIK 77 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~Gg~~p~~~~~~~~~~i~~~~~~~p~~~~~e~~~~l~~ 77 (163)
..|.+..+||+.||||.+||++|+++|+++|.+.+...++.++...++...+.|.++..++|..+.+++...+..
T Consensus 31 ~~g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~ 105 (128)
T 1pdn_C 31 ADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIR 105 (128)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHHTTTTCTTCCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 479999999999999999999999999999988776655545666666677778788888999999988888764
No 81
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=98.84 E-value=3.8e-09 Score=73.64 Aligned_cols=75 Identities=71% Similarity=1.234 Sum_probs=62.7
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCCCCCCCcCChHHHHHHHHHHHhCCCCCchhhhhhhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPNITSWEVRDKLIK 77 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~Gg~~p~~~~~~~~~~i~~~~~~~p~~~~~e~~~~l~~ 77 (163)
..|.+..+||+.||||.+||++|+++|+++|.+.+...++..+...++...+.|.++..++|.++.+++...+..
T Consensus 39 ~~G~s~~~IA~~lgis~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~ 113 (159)
T 2k27_A 39 HQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLA 113 (159)
T ss_dssp HHTCCHHHHHHHHTCCSHHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHCccchHHHHHHHHHH
Confidence 468999999999999999999999999999998887656554555666677778788888999999888887754
No 82
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=98.38 E-value=6e-07 Score=60.70 Aligned_cols=68 Identities=18% Similarity=0.267 Sum_probs=51.4
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCCCCCCCcCChHHHHHHHHHHHhCCCCCchhhhhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPNITSWEVRDKL 75 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~Gg~~p~~~~~~~~~~i~~~~~~~p~~~~~e~~~~l 75 (163)
..|.+..+||+.||||.+||++|++++.+.|...+ ..+|...++.....+... ..+|..+..++...+
T Consensus 20 ~~G~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~----~gr~~~l~~~~~~~i~~~-~~~~~~s~~~i~~~l 87 (141)
T 1u78_A 20 LLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKR----APRRKALSVRDERNVIRA-ASNSCKTARDIRNEL 87 (141)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHSGGGTTCCCC----CCCCCSSCHHHHHHHHHH-HHHCCCCHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHcccccCCcCC----CCCCCcCCHHHHHHHHHH-HhCCCCCHHHHHHHH
Confidence 57999999999999999999999999988876543 234455566666666665 566777776666654
No 83
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=98.00 E-value=2.2e-06 Score=47.21 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=28.8
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhhhccC
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGS 34 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~ 34 (163)
..|++..+||+.||||.+||++|++++.+.|.
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~~~~~~~~~~g~ 50 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIRVYLKDPVSYGT 50 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHCSTTTTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHhhHHhcCC
Confidence 47999999999999999999999999877663
No 84
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=97.66 E-value=9.3e-05 Score=57.05 Aligned_cols=69 Identities=12% Similarity=0.163 Sum_probs=52.8
Q ss_pred ccCCCChhhhHHHhh-------cchhhHHHHHhhhhhccC--CCCCCCCCCCCCcCChHHHHHHHHHHHhCCCCCchhhh
Q psy1904 2 AAAGVRPCVISRQLR-------VSHGCVSKILNRYQETGS--IRPGVIGGSKPRVATPDVEKRIEEYKKTNPNITSWEVR 72 (163)
Q Consensus 2 ~~~g~~~~~ia~~~~-------vs~~~vs~~l~~~~~tG~--~~Pg~~Gg~~p~~~~~~~~~~i~~~~~~~p~~~~~e~~ 72 (163)
...|.+..+||+.|+ ||.+||++|++++++ |. +.+.+.+| +|+..+. +.+.++.+.+|..+..++.
T Consensus 19 ~~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~~-g~~~l~~~~r~g-rp~~~~~---~~i~~~v~~~~~~t~~~ia 93 (345)
T 3hot_A 19 FHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKS-GDFDVDDKEHGK-PPKRYED---AELQALLDEDDAQTQKQLA 93 (345)
T ss_dssp HHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTT-CCCCCSCCCCCC-CCCSSCH---HHHHHHHHHCSCCCHHHHH
T ss_pred HHcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC-CCccccCCCCCC-CCCcccH---HHHHHHHHhCccchHHHHH
Confidence 358999999999988 999999999999987 54 56666555 4554443 3455677889999887777
Q ss_pred hhh
Q psy1904 73 DKL 75 (163)
Q Consensus 73 ~~l 75 (163)
..+
T Consensus 94 ~~l 96 (345)
T 3hot_A 94 EQL 96 (345)
T ss_dssp HHT
T ss_pred HHH
Confidence 665
No 85
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=97.38 E-value=0.00016 Score=45.73 Aligned_cols=30 Identities=13% Similarity=0.235 Sum_probs=27.8
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGS 34 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~ 34 (163)
|.+..+||+.||||.+||++|+++|...|.
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHCCCST
T ss_pred CChHHHHHHHHCcCHHHHHHHHHHHhhcCc
Confidence 899999999999999999999999987664
No 86
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=97.22 E-value=0.00031 Score=45.02 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=27.6
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhhhc
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQET 32 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~~t 32 (163)
.+|+++.|||+.||||..+|+++|++.++.
T Consensus 32 v~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~ 61 (101)
T 2w7n_A 32 VDGKPQATFATSLGLTRGAVSQAVHRVWAA 61 (101)
T ss_dssp TTCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 479999999999999999999999998765
No 87
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=97.17 E-value=7.9e-05 Score=41.11 Aligned_cols=27 Identities=4% Similarity=0.015 Sum_probs=24.4
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
..|++..+||+.||||.+||++|++.+
T Consensus 19 ~~g~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 19 EKGHPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp HTTCCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHc
Confidence 468999999999999999999999664
No 88
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=97.01 E-value=0.00023 Score=40.10 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=23.6
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNR 28 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~ 28 (163)
..|.+..+||+.||||.+||++++++
T Consensus 29 ~~g~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 29 KMGYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 47899999999999999999999853
No 89
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=96.93 E-value=0.00039 Score=39.88 Aligned_cols=30 Identities=10% Similarity=0.062 Sum_probs=25.9
Q ss_pred CCCC----hhhhHHHhhcchhhHHHHHhhhhhcc
Q psy1904 4 AGVR----PCVISRQLRVSHGCVSKILNRYQETG 33 (163)
Q Consensus 4 ~g~~----~~~ia~~~~vs~~~vs~~l~~~~~tG 33 (163)
.|.+ ..+||+.|||+.++|++|++++.+.+
T Consensus 20 ~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~~~~ 53 (59)
T 2glo_A 20 NDNDCKGNQRATARKYNIHRRQIQKWLQCESNLR 53 (59)
T ss_dssp HCTTTTTCHHHHHHHTTSCHHHHHHHHTTHHHHH
T ss_pred cCCCcchHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4667 89999999999999999998886544
No 90
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=96.90 E-value=0.00065 Score=42.17 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=26.2
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhc
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQET 32 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~t 32 (163)
.|.+..+||+.||||.+||++|++++.+.
T Consensus 37 ~g~s~~~iA~~~gIs~sTl~rW~k~~~~~ 65 (87)
T 2elh_A 37 DGESKASVARDIGVPESTLRGWCKNEDKL 65 (87)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 58899999999999999999999988653
No 91
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=96.90 E-value=0.00016 Score=47.84 Aligned_cols=72 Identities=11% Similarity=0.074 Sum_probs=60.3
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCCCCCCCcCChHHHHHHHHHHHhCCCCCchhhhhhh
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPNITSWEVRDKL 75 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~Gg~~p~~~~~~~~~~i~~~~~~~p~~~~~e~~~~l 75 (163)
.+.++.|+|..|+|+...+..||+...++|.+.+-..+.--.........+.+.++.++++.++..+.++.+
T Consensus 19 ~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~it~ae~Rd~l 90 (121)
T 2pjp_A 19 EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQECGSTCAADFRDRL 90 (121)
T ss_dssp SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSSEEHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCceECHHHHHHHHHHHHHHHHHCCCccHHHHHHHH
Confidence 567889999999999999999999999999999876554444445566677777888889999999999886
No 92
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=96.66 E-value=0.0011 Score=38.94 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=19.9
Q ss_pred CChhhhHHHhhcchhhHHHHHh
Q psy1904 6 VRPCVISRQLRVSHGCVSKILN 27 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~ 27 (163)
+++.|||+.+|||.+|||++|+
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 4678999999999999999994
No 93
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=96.57 E-value=0.00084 Score=43.17 Aligned_cols=31 Identities=6% Similarity=0.075 Sum_probs=27.7
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSI 35 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~ 35 (163)
|.+..+||+.||||.+||++|++++...|..
T Consensus 30 g~s~~~va~~~gIs~~tl~~W~~~~~~~~~~ 60 (108)
T 2rn7_A 30 WATICSIAPKIGCTPETLRVWVRQHERDTGG 60 (108)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHTTSCC
T ss_pred cccHHHHHHHHCcCHHHHHHHHHHHHhcccc
Confidence 4788999999999999999999999887754
No 94
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.48 E-value=0.0022 Score=40.32 Aligned_cols=42 Identities=12% Similarity=0.168 Sum_probs=35.0
Q ss_pred CccCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCCC
Q psy1904 1 MAAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGG 42 (163)
Q Consensus 1 ~~~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~Gg 42 (163)
|++.+++.+|||+.+|||+++|++-|+...+.|-+.-...|.
T Consensus 32 L~~~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~ 73 (98)
T 3jth_A 32 LHNQELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQ 73 (98)
T ss_dssp TTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTT
T ss_pred HhcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 445558999999999999999999999999999886544443
No 95
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=96.38 E-value=0.0064 Score=40.19 Aligned_cols=56 Identities=13% Similarity=0.095 Sum_probs=35.4
Q ss_pred CCCCh-hhhHHHhhcchhhHHHHHhhhhh-------ccCCCCCCCCCCCCCcCChHHHHHHHHHHH
Q psy1904 4 AGVRP-CVISRQLRVSHGCVSKILNRYQE-------TGSIRPGVIGGSKPRVATPDVEKRIEEYKK 61 (163)
Q Consensus 4 ~g~~~-~~ia~~~~vs~~~vs~~l~~~~~-------tG~~~Pg~~Gg~~p~~~~~~~~~~i~~~~~ 61 (163)
.|.+. .+||+.|||+.+||++|++.... .+...|.. . .......+..++.+..+..
T Consensus 23 ~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~~~~~~~~~~~~~~-k-r~r~~~~~~~E~~L~~Wi~ 86 (131)
T 1hlv_A 23 NPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYGVASTCR-K-TNKLSPYDKLEGLLIAWFQ 86 (131)
T ss_dssp CTTSCHHHHHHHHTCCHHHHHHHHHTHHHHHHHHHHHGGGGGTC-C-CCCCCTTHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHhCCCHHHHHHHHhchhhhcchhhhccccchhh-c-ccCCCCCHHHHHHHHHHHH
Confidence 56554 49999999999999999988744 34333311 1 1112345666666655553
No 96
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=96.30 E-value=0.0011 Score=40.02 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=23.1
Q ss_pred ccCCCChhhhHHHhhcchhhHHHHH
Q psy1904 2 AAAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 2 ~~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
.+.|++..++|+.+|||.++|++|+
T Consensus 19 ~~~glT~~~LA~~~Gvs~stls~~~ 43 (74)
T 1neq_A 19 KKRKLSLSALSRQFGYAPTTLANAL 43 (74)
T ss_dssp HTTSCCHHHHHHHHSSCHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 4679999999999999999999986
No 97
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=96.18 E-value=0.0018 Score=38.25 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=20.1
Q ss_pred CChhhhHHHhhcchhhHHHHH
Q psy1904 6 VRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l 26 (163)
+++.|||+..|||.+|||++|
T Consensus 10 ~t~~diA~~aGVS~sTVSr~l 30 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRAL 30 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHH
Confidence 689999999999999999998
No 98
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=96.16 E-value=0.0024 Score=38.76 Aligned_cols=32 Identities=13% Similarity=0.274 Sum_probs=29.7
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
++++.|||+.||||.++|.+.|.+..+.|-+.
T Consensus 31 ~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~ 62 (77)
T 1qgp_A 31 ATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ 62 (77)
T ss_dssp CEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 68999999999999999999999999888774
No 99
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.13 E-value=0.0028 Score=37.30 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=29.2
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
.++..|||+.||||.++|.++++.+++.|-+.
T Consensus 25 ~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 25 PVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp CEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe
Confidence 48899999999999999999999999888764
No 100
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.11 E-value=0.0044 Score=37.65 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=30.5
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
.+++..|||+.||||.++|++.|+...+.|-+.
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 348999999999999999999999999999886
No 101
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=96.11 E-value=0.0038 Score=37.12 Aligned_cols=24 Identities=8% Similarity=-0.082 Sum_probs=22.4
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 22 ~~gltq~elA~~~gvs~~tis~~E 45 (73)
T 3fmy_A 22 KLSLTQKEASEIFGGGVNAFSRYE 45 (73)
T ss_dssp HTTCCHHHHHHHHCSCTTHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHH
Confidence 369999999999999999999996
No 102
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=96.11 E-value=0.002 Score=39.61 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=33.1
Q ss_pred ccCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCC
Q psy1904 2 AAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (163)
Q Consensus 2 ~~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg 38 (163)
...|++..+||+.||||.++|.+.|....+.|-+.-.
T Consensus 27 ~~~g~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 27 GIEGATAAQLTRQLNMEKREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp SSSTEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEC
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 3567899999999999999999999999999988654
No 103
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=96.07 E-value=0.0027 Score=45.29 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=25.4
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQ 30 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~ 30 (163)
..|+++.+||+.||||+++|+++|+..+
T Consensus 22 ~~g~tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 22 NDGMSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHHHhc
Confidence 4799999999999999999999997753
No 104
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=96.03 E-value=0.0039 Score=39.84 Aligned_cols=25 Identities=8% Similarity=0.154 Sum_probs=22.4
Q ss_pred CC-CChhhhHHHhhcchhhHHHHHhhh
Q psy1904 4 AG-VRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 4 ~g-~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
.| +++.+||+.+|||.+||||+ ++.
T Consensus 56 ~ge~TQREIA~~lGiS~stISRi-~r~ 81 (101)
T 1jhg_A 56 RGEMSQRELKNELGAGIATITRG-SNS 81 (101)
T ss_dssp HCCSCHHHHHHHHCCCHHHHHHH-HHH
T ss_pred cCCcCHHHHHHHHCCChhhhhHH-HHH
Confidence 57 99999999999999999998 544
No 105
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=96.01 E-value=0.0022 Score=39.90 Aligned_cols=34 Identities=18% Similarity=0.365 Sum_probs=30.4
Q ss_pred cCC-CChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 3 AAG-VRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 3 ~~g-~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
+.| ++..|||+.|+||..||.+-|..+.+.|-+.
T Consensus 13 ~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~ 47 (87)
T 2k02_A 13 LQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVV 47 (87)
T ss_dssp HSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSE
T ss_pred HcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 345 8899999999999999999999998888774
No 106
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=96.00 E-value=0.0029 Score=38.55 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=23.2
Q ss_pred ccCCCChhhhHHHhhcchhhHHHHH
Q psy1904 2 AAAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 2 ~~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
...|+++.++|+.+|||.++|++|+
T Consensus 28 ~~~glsq~elA~~~gis~~~is~~e 52 (83)
T 2a6c_A 28 RNSGLTQFKAAELLGVTQPRVSDLM 52 (83)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3579999999999999999999997
No 107
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=95.99 E-value=0.0024 Score=39.97 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=31.3
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~ 39 (163)
+++..|||+.||||.++|++.|+...+.|-+.-..
T Consensus 38 ~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~ 72 (99)
T 3cuo_A 38 GTSAGELTRITGLSASATSQHLARMRDEGLIDSQR 72 (99)
T ss_dssp SEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 58999999999999999999999999999885443
No 108
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=95.97 E-value=0.0037 Score=39.54 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=31.4
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
..++++.|||+.||||.++|+++|+...+.|-+.-
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~ 68 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIELGLVVR 68 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEe
Confidence 35689999999999999999999999999888754
No 109
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.96 E-value=0.0024 Score=38.91 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=30.3
Q ss_pred cCC-CChhhhHHHhhcchhhHHHHHhhhhhccCC
Q psy1904 3 AAG-VRPCVISRQLRVSHGCVSKILNRYQETGSI 35 (163)
Q Consensus 3 ~~g-~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~ 35 (163)
+.| ++..|||+.|+||..||.+-|..+.+.|-+
T Consensus 13 ~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 13 LRGRMEAAQISQTLNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp HSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 345 899999999999999999999999999987
No 110
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=95.94 E-value=0.0026 Score=40.92 Aligned_cols=40 Identities=15% Similarity=0.077 Sum_probs=33.6
Q ss_pred ccCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCC
Q psy1904 2 AAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIG 41 (163)
Q Consensus 2 ~~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~G 41 (163)
+..+++.+|||+.||||+++|++.|+...+.|-+.....|
T Consensus 35 ~~~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~g 74 (108)
T 2kko_A 35 AQGERAVEAIATATGMNLTTASANLQALKSGGLVEARREG 74 (108)
T ss_dssp TTCCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEET
T ss_pred HcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3445889999999999999999999999999988654433
No 111
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=95.93 E-value=0.0032 Score=40.27 Aligned_cols=37 Identities=22% Similarity=0.184 Sum_probs=32.2
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCC
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~ 39 (163)
+.+++.+|||+.+|||+++|++.|+...+.|-+.-..
T Consensus 37 ~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~ 73 (106)
T 1r1u_A 37 VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKR 73 (106)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 3458999999999999999999999999999886443
No 112
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=95.93 E-value=0.0045 Score=35.45 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=22.6
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|+
T Consensus 12 ~~g~s~~~lA~~~gis~~~i~~~e 35 (66)
T 2xi8_A 12 KKKISQSELAALLEVSRQTINGIE 35 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 479999999999999999999997
No 113
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=95.89 E-value=0.0044 Score=38.83 Aligned_cols=34 Identities=18% Similarity=0.075 Sum_probs=30.5
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.+++..|||+.|+||.++|++.|+...+.|-+.-
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~ 75 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIER 75 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999999999999999998887754
No 114
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=95.79 E-value=0.0054 Score=35.69 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=22.6
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|+
T Consensus 14 ~~glsq~~lA~~~gis~~~i~~~e 37 (71)
T 1zug_A 14 ALKMTQTELATKAGVKQQSIQLIE 37 (71)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHH
Confidence 479999999999999999999997
No 115
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=95.79 E-value=0.0068 Score=34.43 Aligned_cols=28 Identities=21% Similarity=0.120 Sum_probs=25.1
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQ 30 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~ 30 (163)
..|.+..|||+.||||.+||+..+.+..
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3799999999999999999999987763
No 116
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=95.79 E-value=0.0055 Score=35.44 Aligned_cols=24 Identities=4% Similarity=0.279 Sum_probs=22.6
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|+
T Consensus 12 ~~glsq~~lA~~~gis~~~i~~~e 35 (69)
T 1r69_A 12 QLGLNQAELAQKVGTTQQSIEQLE 35 (69)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 479999999999999999999997
No 117
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=95.78 E-value=0.0035 Score=36.38 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=22.4
Q ss_pred ccCCCChhhhHHHhhcchhhHHHHHh
Q psy1904 2 AAAGVRPCVISRQLRVSHGCVSKILN 27 (163)
Q Consensus 2 ~~~g~~~~~ia~~~~vs~~~vs~~l~ 27 (163)
...| +..++|+.+|||+++|++|++
T Consensus 11 ~~~g-s~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 11 EEHG-TQSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp HHTC-CHHHHHHHHTSCHHHHHHHHH
T ss_pred HHcC-CHHHHHHHHCcCHHHHHHHHc
Confidence 3468 999999999999999999984
No 118
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=95.77 E-value=0.0047 Score=36.20 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.3
Q ss_pred ChhhhHHHhhcchhhHHHHHhh
Q psy1904 7 RPCVISRQLRVSHGCVSKILNR 28 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~ 28 (163)
+..++|+.||||+++||+|++.
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~ 36 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKR 36 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHHh
Confidence 8899999999999999999844
No 119
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=95.77 E-value=0.0053 Score=36.97 Aligned_cols=24 Identities=8% Similarity=0.281 Sum_probs=22.4
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||+++|++|+
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e 46 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALF 46 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHH
Confidence 368999999999999999999997
No 120
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=95.77 E-value=0.0059 Score=36.44 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=19.2
Q ss_pred ChhhhHHHhhcchhhHHHHHh
Q psy1904 7 RPCVISRQLRVSHGCVSKILN 27 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~ 27 (163)
++.++|+.||||+++|++|+.
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~ 32 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQ 32 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHh
Confidence 478999999999999999984
No 121
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=95.74 E-value=0.0073 Score=36.77 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=21.4
Q ss_pred CCChhhhHHHhhcchhhHHHHH
Q psy1904 5 GVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l 26 (163)
|+++.++|+..|||++|+|.|.
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIe 53 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIV 53 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHH
T ss_pred hcCHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999999999996
No 122
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=95.67 E-value=0.0085 Score=37.84 Aligned_cols=34 Identities=6% Similarity=-0.108 Sum_probs=30.0
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.+++..|+|++|+||.+.+..|.+.|.+.|.-..
T Consensus 48 g~~s~~e~arry~Is~s~i~~W~r~~~~~G~~~L 81 (95)
T 2jrt_A 48 GLITEREALDRYSLSEEEFALWRSAVAAHGEKAL 81 (95)
T ss_dssp TSSCHHHHHHHTTCCHHHHHHHHHHTTTCCTTSC
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhHHHH
Confidence 4589999999999999999999999988886554
No 123
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=95.66 E-value=0.0078 Score=36.85 Aligned_cols=33 Identities=12% Similarity=0.259 Sum_probs=30.2
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
+++..+||+.||||.++|.+.|.+..+.|-+.-
T Consensus 27 ~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~ 59 (81)
T 1qbj_A 27 ATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQK 59 (81)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 488999999999999999999999999998853
No 124
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.65 E-value=0.0065 Score=40.02 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=32.5
Q ss_pred ccCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCC
Q psy1904 2 AAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (163)
Q Consensus 2 ~~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~ 39 (163)
++.+++.++||+.||||+++|++.|+...+.|-+.-..
T Consensus 56 ~~~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~ 93 (122)
T 1r1t_A 56 ARSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRK 93 (122)
T ss_dssp TTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 34458999999999999999999999999988875443
No 125
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=95.63 E-value=0.0031 Score=36.35 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=20.6
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
.|.++.++|+.+|||+++|++|.
T Consensus 9 ~~~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 9 HFGTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHSSHHHHHHHHTCCHHHHHHCC
T ss_pred HcCCHHHHHHHhCCCHHHHHHHH
Confidence 34589999999999999999995
No 126
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=95.63 E-value=0.0099 Score=34.59 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=24.6
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
..|.+..+||+.+|||.++|.+++.+.
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~~~ra 55 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSRVARA 55 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 478999999999999999999998765
No 127
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=95.63 E-value=0.014 Score=34.12 Aligned_cols=51 Identities=16% Similarity=0.121 Sum_probs=36.5
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCC-CCCCCCCCCCCcCChHHHHHHHHHHH
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSI-RPGVIGGSKPRVATPDVEKRIEEYKK 61 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~-~Pg~~Gg~~p~~~~~~~~~~i~~~~~ 61 (163)
++..|+|+.||||.+||++|.+. |.+ .|-..|+.. .....++++++.+...
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~----g~fP~piklG~~~-~w~~~ev~~Wl~~~~~ 62 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKS----GDLPKAKVIHGRA-RWLYRDHCEFKNKLLS 62 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHH----HHCCCSEESSSCE-EEEHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC----CCCCCCEEeCCCe-EEeHHHHHHHHHHHHH
Confidence 67889999999999999999865 544 444466554 5555777777755443
No 128
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=95.63 E-value=0.0091 Score=36.58 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=22.4
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||+++|++|.
T Consensus 25 ~~gltq~elA~~~gis~~~is~~E 48 (86)
T 3eus_A 25 DAGLTQADLAERLDKPQSFVAKVE 48 (86)
T ss_dssp HTTCCHHHHHHHTTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHH
Confidence 379999999999999999999996
No 129
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=95.59 E-value=0.0064 Score=39.71 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=32.8
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCC
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIG 41 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~G 41 (163)
...++.+|||+.||||+++|++.|+...+.|-+.-...|
T Consensus 32 ~~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~g 70 (118)
T 2jsc_A 32 DGVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEG 70 (118)
T ss_dssp TTCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECS
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEEC
Confidence 345889999999999999999999999999988654333
No 130
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=95.59 E-value=0.0077 Score=40.15 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=31.9
Q ss_pred ccCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 2 AAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 2 ~~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
...|+++.+||+.++|+.++|++++++..+.|=+.-
T Consensus 48 ~~~~~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r 83 (146)
T 3tgn_A 48 SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLET 83 (146)
T ss_dssp TTCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC
T ss_pred HhCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 345599999999999999999999999999998854
No 131
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=95.58 E-value=0.0078 Score=34.59 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=22.4
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|+
T Consensus 16 ~~g~s~~~lA~~~gis~~~i~~~e 39 (68)
T 2r1j_L 16 KLKIRQAALGKMVGVSNVAISQWE 39 (68)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHH
Confidence 368999999999999999999997
No 132
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=95.56 E-value=0.0064 Score=38.10 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=31.0
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
..|+.+.|||+++++++++|.++|+++.+-|-+.
T Consensus 34 ~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 34 NKGIWSRDVRYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp TTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 4589999999999999999999999998887775
No 133
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=95.54 E-value=0.0075 Score=35.53 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=22.6
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 19 ~~glsq~~lA~~~gis~~~is~~e 42 (73)
T 3omt_A 19 EKGKTNLWLTETLDKNKTTVSKWC 42 (73)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 468999999999999999999997
No 134
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=95.52 E-value=0.0038 Score=39.30 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.9
Q ss_pred CCCChhhhHHHhhcchhhHHHHHh
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILN 27 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~ 27 (163)
.|++..|||+.+|||.+||++.|.
T Consensus 19 ~~~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 19 TKKTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HCCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHc
Confidence 468899999999999999999993
No 135
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=95.46 E-value=0.0085 Score=35.11 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=22.6
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|+
T Consensus 24 ~~g~s~~~lA~~~gis~~~i~~~e 47 (74)
T 1y7y_A 24 AKGLSQETLAFLSGLDRSYVGGVE 47 (74)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 479999999999999999999997
No 136
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=95.45 E-value=0.0085 Score=35.45 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=22.6
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~e 44 (77)
T 2b5a_A 21 QKGVSQEELADLAGLHRTYISEVE 44 (77)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHH
Confidence 479999999999999999999997
No 137
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=95.44 E-value=0.011 Score=37.21 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=22.3
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 41 ~~glsq~elA~~lgvs~~~is~~E 64 (99)
T 2ppx_A 41 ALKLTQEEFSARYHIPLGTLRDWE 64 (99)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHH
Confidence 369999999999999999999995
No 138
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=95.42 E-value=0.0088 Score=35.94 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=22.5
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 21 ~~gltq~elA~~~gis~~~is~~E 44 (78)
T 3qq6_A 21 EKGYSLSELAEKAGVAKSYLSSIE 44 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 379999999999999999999997
No 139
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=95.41 E-value=0.0091 Score=35.83 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=21.3
Q ss_pred CCCChhhhHHHhhcchhhHHHHHh
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILN 27 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~ 27 (163)
.| ++.++|+.+|||+++|++|.+
T Consensus 11 ~g-sq~~lA~~lgvs~~~is~~e~ 33 (79)
T 3bd1_A 11 LG-SVSALAASLGVRQSAISNWRA 33 (79)
T ss_dssp HS-SHHHHHHHHTCCHHHHHHHHH
T ss_pred hC-CHHHHHHHHCCCHHHHHHHHH
Confidence 58 999999999999999999974
No 140
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=95.40 E-value=0.0082 Score=35.62 Aligned_cols=24 Identities=4% Similarity=0.108 Sum_probs=22.7
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|+
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~e 41 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAMF 41 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 479999999999999999999997
No 141
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=95.40 E-value=0.0077 Score=38.45 Aligned_cols=24 Identities=4% Similarity=0.016 Sum_probs=22.2
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+++|||.++|++|-
T Consensus 47 ~~glTQ~eLA~~~gvs~~~is~~E 70 (101)
T 4ghj_A 47 NRDLTQSEVAEIAGIARKTVLNAE 70 (101)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHcCCCHHHHHHHH
Confidence 369999999999999999999994
No 142
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=95.39 E-value=0.0078 Score=37.43 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=22.7
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 20 ~~glsq~~lA~~~gis~~~is~~e 43 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTWC 43 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 579999999999999999999997
No 143
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=95.39 E-value=0.0011 Score=50.27 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=0.0
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+++|||+++|++|.
T Consensus 41 ~~g~t~~~la~~~g~s~~~is~~e 64 (311)
T 4ich_A 41 SRPGAQREFAAAIGLDESKLSKSL 64 (311)
T ss_dssp ------------------------
T ss_pred HCCCCHHHHHHHhCCCHHHHHHHH
Confidence 479999999999999999999996
No 144
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=95.38 E-value=0.0061 Score=37.88 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=22.7
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 35 ~~glTq~eLA~~~GiS~~tis~iE 58 (88)
T 3t76_A 35 DRDMKKGELREAVGVSKSTFAKLG 58 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 479999999999999999999997
No 145
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=95.37 E-value=0.0067 Score=39.42 Aligned_cols=34 Identities=12% Similarity=0.160 Sum_probs=30.4
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.+++..+||+.|+||+++|++.|+...+.|-+.-
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~ 77 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVG 77 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4689999999999999999999999988887743
No 146
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=95.36 E-value=0.0096 Score=35.13 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=22.6
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|+
T Consensus 21 ~~g~s~~~lA~~~gis~~~i~~~e 44 (76)
T 3bs3_A 21 EKQRTNRWLAEQMGKSENTISRWC 44 (76)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 479999999999999999999997
No 147
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=95.34 E-value=0.014 Score=34.34 Aligned_cols=27 Identities=15% Similarity=0.108 Sum_probs=24.8
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
..|.+..+||+.+|||.++|+..+.+.
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~~ 50 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNA 50 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 478999999999999999999999875
No 148
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=95.30 E-value=0.011 Score=35.24 Aligned_cols=24 Identities=8% Similarity=0.158 Sum_probs=22.4
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 13 ~~glsq~~lA~~~gis~~~i~~~e 36 (77)
T 2k9q_A 13 RLSLTAKSVAEEMGISRQQLCNIE 36 (77)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHH
Confidence 368999999999999999999997
No 149
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=95.27 E-value=0.0077 Score=38.57 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=22.8
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||+++|++|+
T Consensus 25 ~~gltq~eLA~~lGis~~~is~ie 48 (104)
T 3trb_A 25 LDKMSANQLAKHLAIPTNRVTAIL 48 (104)
T ss_dssp TTSCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 579999999999999999999997
No 150
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=95.26 E-value=0.0087 Score=39.29 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=31.4
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIG 41 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~G 41 (163)
.+++.++||+.||||+++|++.|+...+.|-+.-...|
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~g 92 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEG 92 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC---
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEC
Confidence 45889999999999999999999999999988654434
No 151
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=95.25 E-value=0.0068 Score=38.92 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=31.9
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~ 39 (163)
.+++..+||+.|+||.++|++.|+...+.|-+.-..
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~ 68 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVK 68 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEe
Confidence 458999999999999999999999999999886543
No 152
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=95.25 E-value=0.012 Score=37.54 Aligned_cols=32 Identities=9% Similarity=0.035 Sum_probs=28.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSI 35 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~ 35 (163)
.+++..|+|++|+||.++|..|.+.|.+.|.-
T Consensus 49 g~lS~~EAa~ry~Is~~ei~~W~r~y~~~G~~ 80 (101)
T 2oa4_A 49 GLITLAEAKQTYGLSDEEFNSWVSALAEHGKD 80 (101)
T ss_dssp TTCCHHHHHHTTCSSHHHHHHHHHHHHCCCSS
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhHH
Confidence 45999999999999999999999999888754
No 153
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=95.23 E-value=0.012 Score=34.67 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=22.4
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|+
T Consensus 16 ~~gls~~~lA~~~gis~~~i~~~e 39 (76)
T 1adr_A 16 KLKIRQAALGKMVGVSNVAISQWE 39 (76)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 368999999999999999999997
No 154
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=95.22 E-value=0.0078 Score=40.15 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=31.8
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
..++++.|||+.+|++.++|+++|++..+.|=+.-
T Consensus 39 ~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r 73 (152)
T 1ku9_A 39 DKPLTISDIMEELKISKGNVSMSLKKLEELGFVRK 73 (152)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 45699999999999999999999999999998854
No 155
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=95.19 E-value=0.011 Score=39.27 Aligned_cols=24 Identities=8% Similarity=-0.082 Sum_probs=22.5
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 82 ~~glsq~~la~~~g~s~~~i~~~E 105 (133)
T 3o9x_A 82 KLSLTQKEASEIFGGGVNAFSRYE 105 (133)
T ss_dssp HTTCCHHHHHHHHCSCTTHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHH
Confidence 479999999999999999999996
No 156
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=95.17 E-value=0.016 Score=35.22 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=25.2
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQ 30 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~ 30 (163)
..|++..|||+.||||.+||...+.+.+
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4799999999999999999999987763
No 157
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=95.14 E-value=0.014 Score=35.42 Aligned_cols=24 Identities=8% Similarity=0.278 Sum_probs=22.6
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|+
T Consensus 23 ~~glsq~~lA~~~gis~~~i~~~e 46 (88)
T 2wiu_B 23 QNGWTQSELAKKIGIKQATISNFE 46 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHH
Confidence 479999999999999999999997
No 158
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=95.13 E-value=0.0095 Score=37.63 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=33.4
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCCC
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGG 42 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~Gg 42 (163)
...++.+|||+.+|||+++|++-|+...+.|-+.-...|.
T Consensus 34 ~~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~ 73 (102)
T 3pqk_A 34 EGEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIK 73 (102)
T ss_dssp TCCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSS
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3448999999999999999999999999999885544443
No 159
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=95.12 E-value=0.014 Score=35.14 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=22.6
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~e 44 (84)
T 2ef8_A 21 EASLSQSELAIFLGLSQSDISKIE 44 (84)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHH
Confidence 479999999999999999999997
No 160
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=95.12 E-value=0.016 Score=34.00 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=29.1
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCC-CC--CCCCcCChHHHHHH
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI-GG--SKPRVATPDVEKRI 56 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~-Gg--~~p~~~~~~~~~~i 56 (163)
++..|+|+.||||.+|+.+|.+. |. |... || ...+....++..++
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~----G~--P~~~~~g~~~~~~y~~~dv~~wl 50 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQ----GM--PVLRGGGKGNEVLYDSAAVIKWY 50 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT----TC--CCSSCCCSSSCCEEEHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC----CC--CeEeeCCCcceEEECHHHHHHHH
Confidence 35679999999999999999744 65 4432 33 23333344454444
No 161
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=95.10 E-value=0.017 Score=35.77 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=24.4
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
..|++..+||+.||||.++|...+.+.
T Consensus 51 ~~g~s~~eIA~~lgis~~tV~~~l~ra 77 (92)
T 3hug_A 51 YRGWSTAQIATDLGIAEGTVKSRLHYA 77 (92)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 479999999999999999999998665
No 162
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=95.10 E-value=0.015 Score=37.32 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=23.2
Q ss_pred ccCCCChhhhHHHhhcchhhHHHHH
Q psy1904 2 AAAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 2 ~~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
...|+++.++|+.+|||.++|++|+
T Consensus 21 ~~~glsq~~lA~~~gis~~~is~~e 45 (113)
T 2eby_A 21 EPLDLKINELAELLHVHRNSVSALI 45 (113)
T ss_dssp TTTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3579999999999999999999997
No 163
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=95.09 E-value=0.016 Score=39.19 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=30.1
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
+++..+||+.+|||.++|++.|++..+.|-+.
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 48 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKLEKDGVIK 48 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 48999999999999999999999999999885
No 164
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=95.09 E-value=0.011 Score=37.79 Aligned_cols=38 Identities=16% Similarity=0.270 Sum_probs=32.7
Q ss_pred ccCCCChhhhHHHh-hcchhhHHHHHhhhhhccCCCCCC
Q psy1904 2 AAAGVRPCVISRQL-RVSHGCVSKILNRYQETGSIRPGV 39 (163)
Q Consensus 2 ~~~g~~~~~ia~~~-~vs~~~vs~~l~~~~~tG~~~Pg~ 39 (163)
+..+++.+|||+.+ +||+++|++.|++..+.|=+.-..
T Consensus 24 ~~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~ 62 (107)
T 2hzt_A 24 THGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIV 62 (107)
T ss_dssp TTCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HhCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEee
Confidence 34458999999999 999999999999999999886433
No 165
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=95.08 E-value=0.019 Score=33.41 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=24.6
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
..|.+..|||+.+|||.++|..++.+.
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra 49 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKA 49 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 378999999999999999999998765
No 166
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=95.06 E-value=0.0076 Score=37.58 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=30.2
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
.+++..+||+.++||+++|++.|++..+.|-+.
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~ 61 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVK 61 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 458899999999999999999999999998885
No 167
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=95.06 E-value=0.0096 Score=45.53 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=35.4
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCCCC
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGS 43 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~Gg~ 43 (163)
..|++..|||++||||..||+|.|...++.|-+.-...|+.
T Consensus 19 ~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~iri~g~~ 59 (315)
T 2w48_A 19 EQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYDY 59 (315)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEecCCc
Confidence 36799999999999999999999999999999875544543
No 168
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=95.06 E-value=0.014 Score=35.16 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=22.4
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 25 ~~gltq~elA~~~gis~~~is~~e 48 (83)
T 3f6w_A 25 AAGITQKELAARLGRPQSFVSKTE 48 (83)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 368999999999999999999997
No 169
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=95.05 E-value=0.0092 Score=37.28 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=29.0
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSI 35 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~ 35 (163)
+++.+||+.++|+.++|++++++..+.|=+
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCc
Confidence 889999999999999999999999999988
No 170
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=95.02 E-value=0.012 Score=36.73 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=30.6
Q ss_pred CCChhhhHHHhhcchhh-HHHHHhhhhhccCCC
Q psy1904 5 GVRPCVISRQLRVSHGC-VSKILNRYQETGSIR 36 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~-vs~~l~~~~~tG~~~ 36 (163)
++++.+||+.++|+.++ |++++++..+.|-+.
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 69999999999999999 999999999999887
No 171
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.91 E-value=0.0071 Score=35.69 Aligned_cols=40 Identities=10% Similarity=0.129 Sum_probs=36.6
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccc
Q psy1904 109 QLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLG 148 (163)
Q Consensus 109 q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqn 148 (163)
-.+.|++.|...+.+.......|..+..|+-.||+-||-.
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 3478999999999999999999999999999999999954
No 172
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=94.90 E-value=0.0037 Score=40.82 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=33.7
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCCC
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGG 42 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~Gg 42 (163)
...++.++||+.||||+++|++-|+...+.|-+.-...|.
T Consensus 29 ~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr 68 (118)
T 3f6o_A 29 RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGR 68 (118)
T ss_dssp TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCC
Confidence 3458899999999999999999999999999886544443
No 173
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=94.90 E-value=0.017 Score=35.74 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=22.5
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|+
T Consensus 19 ~~gltq~~lA~~~gis~~~is~~e 42 (94)
T 2ict_A 19 ELNVSLREFARAMEIAPSTASRLL 42 (94)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHH
Confidence 468999999999999999999998
No 174
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=94.90 E-value=0.012 Score=39.57 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=29.9
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
..++..+||+.+|||.++|++.|++..+.|-+.
T Consensus 18 ~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 50 (144)
T 2cfx_A 18 SRLSMRELGRKIKLSPPSVTERVRQLESFGIIK 50 (144)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 348999999999999999999999998888774
No 175
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=94.90 E-value=0.013 Score=39.78 Aligned_cols=33 Identities=12% Similarity=0.216 Sum_probs=30.2
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
..++..+||+.+|+|.++|++.|++..+.|-+.
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 52 (150)
T 2w25_A 20 GRATLSELATRAGLSVSAVQSRVRRLESRGVVQ 52 (150)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 348999999999999999999999999999883
No 176
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=94.89 E-value=0.021 Score=38.13 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=30.3
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
.++++.+||+.|+||.++|+++|++..+.|-+.
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~ 53 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLI 53 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 569999999999999999999999998888774
No 177
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=94.88 E-value=0.02 Score=35.95 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=30.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.+++..+||+.++|+.++|++.|+...+.|-+.-
T Consensus 33 ~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~ 66 (109)
T 1sfx_A 33 GGMRVSEIARELDLSARFVRDRLKVLLKRGFVRR 66 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 4689999999999999999999999999888754
No 178
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=94.83 E-value=0.015 Score=38.29 Aligned_cols=32 Identities=13% Similarity=0.315 Sum_probs=29.8
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
+++.+||+.+++|.+||++.|+++.+.|-+.-
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r 74 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQR 74 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 79999999999999999999999999998843
No 179
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=94.80 E-value=0.021 Score=37.87 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=30.1
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
.+++..+||+.|+|+.++|++.|++..+.|-+.
T Consensus 30 ~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~ 62 (139)
T 2x4h_A 30 EGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVK 62 (139)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEE
Confidence 468999999999999999999999998888764
No 180
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=94.77 E-value=0.023 Score=36.92 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=24.6
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
..|.+..+||+.+|||.+||++++.+.
T Consensus 36 ~~g~s~~EIA~~lgiS~~tV~~~l~ra 62 (113)
T 1s7o_A 36 ADDYSLAEIADEFGVSRQAVYDNIKRT 62 (113)
T ss_dssp HTCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 379999999999999999999999765
No 181
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=94.74 E-value=0.022 Score=35.00 Aligned_cols=24 Identities=4% Similarity=0.122 Sum_probs=22.6
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 24 ~~glsq~~lA~~~gis~~~is~~e 47 (91)
T 1x57_A 24 SKGLTQKDLATKINEKPQVIADYE 47 (91)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 479999999999999999999997
No 182
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=94.74 E-value=0.011 Score=38.25 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=32.5
Q ss_pred cCCCChhhhHHHh-hcchhhHHHHHhhhhhccCCCCCC
Q psy1904 3 AAGVRPCVISRQL-RVSHGCVSKILNRYQETGSIRPGV 39 (163)
Q Consensus 3 ~~g~~~~~ia~~~-~vs~~~vs~~l~~~~~tG~~~Pg~ 39 (163)
+.+++..+||+.+ +|+.++|++.|++..+.|-+.-..
T Consensus 33 ~~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~ 70 (112)
T 1z7u_A 33 QGTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRES 70 (112)
T ss_dssp HSCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred hCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEee
Confidence 4468999999999 999999999999999999886443
No 183
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=94.74 E-value=0.025 Score=35.01 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=25.2
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQ 30 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~ 30 (163)
..|++..+||+.||||.+||...+.+.+
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHVSNIL 69 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3799999999999999999999997764
No 184
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=94.73 E-value=0.015 Score=39.50 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=29.8
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
.++..+||+.+|+|.++|++.|++..+.|-+.
T Consensus 21 ~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 21 KAPLREISKITGLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp TCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 48999999999999999999999999999875
No 185
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=94.70 E-value=0.019 Score=34.54 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=22.5
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 22 ~~glsq~~lA~~~gis~~~i~~~e 45 (82)
T 3s8q_A 22 EKGMTQEDLAYKSNLDRTYISGIE 45 (82)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHH
Confidence 479999999999999999999996
No 186
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=94.69 E-value=0.019 Score=36.30 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=22.5
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|+
T Consensus 29 ~~gltq~~lA~~~gis~~~is~~e 52 (104)
T 3cec_A 29 DLDINTANFAEILGVSNQTIQEVI 52 (104)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 368999999999999999999997
No 187
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=94.67 E-value=0.02 Score=35.19 Aligned_cols=24 Identities=8% Similarity=0.277 Sum_probs=22.5
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|+
T Consensus 28 ~~glsq~~lA~~~gis~~~is~~e 51 (92)
T 1lmb_3 28 ELGLSQESVADKMGMGQSGVGALF 51 (92)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 469999999999999999999997
No 188
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=94.63 E-value=0.031 Score=33.00 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=23.7
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
.|++..|||+.+|||.++|..++.+.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra 54 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKA 54 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 78999999999999999999988654
No 189
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=94.63 E-value=0.016 Score=39.82 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=29.4
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
.++..+||+.+|+|.++|++.|++..+.|-+.
T Consensus 24 ~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 55 (162)
T 2p5v_A 24 RLTNVELSERVALSPSPCLRRLKQLEDAGIVR 55 (162)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 48999999999999999999999998888774
No 190
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=94.60 E-value=0.019 Score=38.08 Aligned_cols=34 Identities=6% Similarity=0.200 Sum_probs=30.7
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.|+++.+||+.++|+.++|++++++..+-|=+.-
T Consensus 49 ~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r 82 (140)
T 3hsr_A 49 EKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVR 82 (140)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEe
Confidence 4589999999999999999999999999888753
No 191
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=94.59 E-value=0.023 Score=34.40 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=30.5
Q ss_pred CCCChhhhHHHh-----hcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQL-----RVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~-----~vs~~~vs~~l~~~~~tG~~~P 37 (163)
..++..||++.| +||.+||++.|+.+.+.|-+.-
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 358999999999 9999999999999999988753
No 192
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=94.58 E-value=0.021 Score=33.10 Aligned_cols=24 Identities=8% Similarity=-0.007 Sum_probs=22.5
Q ss_pred cCCCChhhhHHHhh--cchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLR--VSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~--vs~~~vs~~l 26 (163)
..|+++.++|+.+| ||.++|++|.
T Consensus 19 ~~glsq~~lA~~~g~~is~~~i~~~e 44 (71)
T 2ewt_A 19 QQGLSLHGVEEKSQGRWKAVVVGSYE 44 (71)
T ss_dssp HTTCCHHHHHHHTTTSSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCcCCHHHHHHHH
Confidence 46999999999999 9999999997
No 193
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=94.48 E-value=0.02 Score=37.81 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=31.1
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.|+++.+||+.++|+.++|++++++..+-|=+.-
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r 79 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYR 79 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEee
Confidence 3799999999999999999999999999988853
No 194
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=94.48 E-value=0.024 Score=37.63 Aligned_cols=35 Identities=11% Similarity=0.227 Sum_probs=28.2
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg 38 (163)
.|+++.+||+.++|+.++|++++++..+-|=+.-.
T Consensus 50 ~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 84 (142)
T 3ech_A 50 RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRE 84 (142)
T ss_dssp TTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC-
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeec
Confidence 46999999999999999999999999999888543
No 195
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=94.45 E-value=0.031 Score=34.94 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=25.1
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQ 30 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~ 30 (163)
..|++..+||+.||||.+||...+.+.+
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4799999999999999999999987763
No 196
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=94.44 E-value=0.016 Score=39.30 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=29.4
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
.++..+||+.+|+|.++|++.|++..+.|-+.
T Consensus 22 ~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 53 (152)
T 2cg4_A 22 RTAYAELAKQFGVSPETIHVRVEKMKQAGIIT 53 (152)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcc
Confidence 48999999999999999999999998888774
No 197
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=94.44 E-value=0.029 Score=36.82 Aligned_cols=34 Identities=24% Similarity=0.502 Sum_probs=30.9
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.++++.+||+.++|+.++|++++++..+.|-+.-
T Consensus 42 ~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~ 75 (138)
T 3bpv_A 42 PGIKQDELATFFHVDKGTIARTLRRLEESGFIER 75 (138)
T ss_dssp TTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 5699999999999999999999999999888754
No 198
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=94.44 E-value=0.082 Score=35.65 Aligned_cols=59 Identities=14% Similarity=0.007 Sum_probs=37.6
Q ss_pred CCCChhhhHH----Hh--hcchhhHHHHHhhhhhccCCCCCC--CCCCCCCcCChHHHHHHHHHHHh
Q psy1904 4 AGVRPCVISR----QL--RVSHGCVSKILNRYQETGSIRPGV--IGGSKPRVATPDVEKRIEEYKKT 62 (163)
Q Consensus 4 ~g~~~~~ia~----~~--~vs~~~vs~~l~~~~~tG~~~Pg~--~Gg~~p~~~~~~~~~~i~~~~~~ 62 (163)
.+++..+||+ .| +||.+|||+||+.....-+...+. ..-.......++.++.+..+..+
T Consensus 29 ~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~~l~~~~~~~~~~kr~r~~~~~~le~~L~~Wi~~ 95 (144)
T 1iuf_A 29 NRSGQQDLIEWFREKFGKDISQPSVSQILSSKYSYLDNTVEKPWDVKRNRPPKYPLLEAALFEWQVQ 95 (144)
T ss_dssp SCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHHHTTTSCSSSSSSSCCCCCSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHHHhhhcccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 4589999999 99 999999999998764422221111 01112224457777777666655
No 199
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=94.41 E-value=0.027 Score=37.31 Aligned_cols=35 Identities=9% Similarity=0.208 Sum_probs=31.4
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
..++++.+||+.++|+.++|++++++..+.|-+.-
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r 82 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVR 82 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEe
Confidence 35689999999999999999999999999888853
No 200
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=94.41 E-value=0.03 Score=34.86 Aligned_cols=24 Identities=13% Similarity=-0.002 Sum_probs=22.4
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 15 ~~gltq~~lA~~~gis~~~is~~e 38 (99)
T 2l49_A 15 SEYLSRQQLADLTGVPYGTLSYYE 38 (99)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 469999999999999999999996
No 201
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=94.40 E-value=0.031 Score=33.26 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=25.1
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQ 30 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~ 30 (163)
..|++..+||+.||||.++|...+.+..
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4799999999999999999999987763
No 202
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=94.36 E-value=0.023 Score=39.56 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=29.8
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
.++..+||+.+|||.++|++.|+++.+.|-+.
T Consensus 41 ~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 41 KAPLREISKITGLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 38999999999999999999999999999885
No 203
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=94.36 E-value=0.03 Score=36.88 Aligned_cols=33 Identities=9% Similarity=0.125 Sum_probs=30.4
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
++++.+||+.++|+.++|++++++..+.|=+.-
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r 82 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYR 82 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEe
Confidence 699999999999999999999999999887743
No 204
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=94.34 E-value=0.022 Score=36.37 Aligned_cols=34 Identities=26% Similarity=0.233 Sum_probs=30.8
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg 38 (163)
.++.++||+.||||.++|++.|+...+.|-+.-.
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3789999999999999999999999999988543
No 205
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=94.33 E-value=0.024 Score=37.22 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=22.5
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+++|||+++|++|.
T Consensus 51 ~~glTQ~eLA~~lGis~~~Is~iE 74 (120)
T 2o38_A 51 RARLSQAAAAARLGINQPKVSALR 74 (120)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 469999999999999999999997
No 206
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=94.32 E-value=0.031 Score=37.22 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=30.7
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.++++.+||+.++|++++|++++++..+.|=+.-
T Consensus 53 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r 86 (148)
T 3nrv_A 53 SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEV 86 (148)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 4699999999999999999999999999887753
No 207
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=94.29 E-value=0.039 Score=33.83 Aligned_cols=26 Identities=8% Similarity=0.014 Sum_probs=24.1
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
.|++..+||..+|||.++|..++.+-
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra 62 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKA 62 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 78999999999999999999998765
No 208
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=94.29 E-value=0.032 Score=38.37 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=29.7
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
.++..+||+.+|||.++|.+-++++.+.|-+.
T Consensus 17 ~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 17 TLAVADLAKKVGLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp CSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCee
Confidence 38999999999999999999999999999775
No 209
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=94.29 E-value=0.025 Score=37.91 Aligned_cols=34 Identities=12% Similarity=0.205 Sum_probs=31.3
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
..|+++.+||+.++|++++|++++++..+-|=+.
T Consensus 49 ~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~ 82 (151)
T 3kp7_A 49 IEALTVGQITEKQGVNKAAVSRRVKKLLNAELVK 82 (151)
T ss_dssp HSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEE
T ss_pred cCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3579999999999999999999999999999885
No 210
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.28 E-value=0.035 Score=36.75 Aligned_cols=35 Identities=11% Similarity=0.255 Sum_probs=31.3
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
..++++.+||+.++|+.++|++++++..+-|-+.-
T Consensus 50 ~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r 84 (146)
T 2fbh_A 50 RDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRR 84 (146)
T ss_dssp SSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeee
Confidence 35699999999999999999999999998887754
No 211
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=94.27 E-value=0.028 Score=32.89 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=19.5
Q ss_pred ChhhhHHHhhcchhhHHHHHh
Q psy1904 7 RPCVISRQLRVSHGCVSKILN 27 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~ 27 (163)
+...+|+.||||+++||++++
T Consensus 15 s~t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 778999999999999999984
No 212
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=94.26 E-value=0.037 Score=37.63 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=31.6
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg 38 (163)
.|+++.+||+.++|+.++|++++++..+-|=+.-.
T Consensus 59 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 93 (162)
T 3k0l_A 59 PNLSNAKLAERSFIKPQSANKILQDLLANGWIEKA 93 (162)
T ss_dssp TTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEec
Confidence 56999999999999999999999999999988543
No 213
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.25 E-value=0.032 Score=37.05 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=31.4
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
..++++.+||+.++|++++|++++++..+.|-+.-
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r 82 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERGGLIVR 82 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEee
Confidence 35699999999999999999999999999888743
No 214
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=94.25 E-value=0.022 Score=39.71 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=29.6
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
.++..+||+.+|||.++|.+.|++..+.|-+.
T Consensus 31 ~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~ 62 (171)
T 2ia0_A 31 RLTISELSEQLKKPESTIHFRIKKLQERGVIE 62 (171)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 48999999999999999999999998888874
No 215
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=94.21 E-value=0.036 Score=35.70 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=22.5
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 32 ~~gltq~elA~~~gis~~~is~~E 55 (114)
T 3vk0_A 32 NKGWSQEELARQCGLDRTYVSAVE 55 (114)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 479999999999999999999996
No 216
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=94.21 E-value=0.01 Score=40.60 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=40.9
Q ss_pred ccCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCCCCCCCcCChHHHHHHHH
Q psy1904 2 AAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEE 58 (163)
Q Consensus 2 ~~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~Gg~~p~~~~~~~~~~i~~ 58 (163)
+...++.++||+.|+||+++|++-|+...+.|-+.-...|...-...++.....+.+
T Consensus 68 ~~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~~ 124 (151)
T 3f6v_A 68 TSGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRA 124 (151)
T ss_dssp GGCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHH
Confidence 444588999999999999999999999999998865544433333344444444434
No 217
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=94.20 E-value=0.019 Score=38.91 Aligned_cols=32 Identities=13% Similarity=0.266 Sum_probs=29.6
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
.++..+||+.+|+|.++|++.+++..+.|-+.
T Consensus 23 ~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 23 RLTYRELADILNTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 48999999999999999999999998888775
No 218
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=94.19 E-value=0.039 Score=37.37 Aligned_cols=34 Identities=12% Similarity=0.292 Sum_probs=30.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.|+.+.+||+.++|+.++|++++++..+-|=+.-
T Consensus 45 ~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R 78 (151)
T 4aik_A 45 PEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITR 78 (151)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEe
Confidence 4688899999999999999999999999998853
No 219
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=94.16 E-value=0.018 Score=36.75 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=32.2
Q ss_pred ccCCCChhhhHHHh-hcchhhHHHHHhhhhhccCCCCCC
Q psy1904 2 AAAGVRPCVISRQL-RVSHGCVSKILNRYQETGSIRPGV 39 (163)
Q Consensus 2 ~~~g~~~~~ia~~~-~vs~~~vs~~l~~~~~tG~~~Pg~ 39 (163)
...+++..|||+.+ |||+++|++.|++..+.|-+.-..
T Consensus 35 ~~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~ 73 (107)
T 2fsw_A 35 NRRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQ 73 (107)
T ss_dssp TTSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HhCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEee
Confidence 33458999999999 599999999999999999886443
No 220
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=94.16 E-value=0.023 Score=32.77 Aligned_cols=27 Identities=0% Similarity=-0.022 Sum_probs=23.7
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
..|-....+|+.||||.+|+++.+++|
T Consensus 30 ~~~gn~~~aA~~LGisr~tL~rklkk~ 56 (63)
T 3e7l_A 30 EYDYDLKRTAEEIGIDLSNLYRKIKSL 56 (63)
T ss_dssp HTTTCHHHHHHHHTCCHHHHHHHHHHT
T ss_pred HhCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 345677899999999999999999887
No 221
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=94.12 E-value=0.031 Score=36.74 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=30.7
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.++++.+||+.++|+.++|++++++..+.|-+.-
T Consensus 51 ~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r 84 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQR 84 (140)
T ss_dssp SSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 4689999999999999999999999998887753
No 222
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=94.12 E-value=0.032 Score=35.43 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=22.6
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 12 ~~gltq~~lA~~~gis~~~i~~~e 35 (111)
T 1b0n_A 12 EKGYSLSELAEKAGVAKSYLSSIE 35 (111)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 479999999999999999999997
No 223
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=94.08 E-value=0.047 Score=34.86 Aligned_cols=24 Identities=4% Similarity=0.117 Sum_probs=22.7
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 47 ~~glsq~elA~~~gis~~~is~~E 70 (107)
T 2jvl_A 47 EPTMTQAELGKEIGETAATVASYE 70 (107)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 579999999999999999999996
No 224
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=94.06 E-value=0.036 Score=38.11 Aligned_cols=25 Identities=4% Similarity=0.028 Sum_probs=23.0
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhh
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNR 28 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~ 28 (163)
.|++..+||+.||||.+|+++|.+.
T Consensus 47 ~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 47 EKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 3799999999999999999999874
No 225
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=94.00 E-value=0.035 Score=35.98 Aligned_cols=24 Identities=8% Similarity=-0.046 Sum_probs=22.3
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+++|||.++|++|.
T Consensus 18 ~~glSq~eLA~~~gis~~~is~iE 41 (112)
T 2wus_R 18 ERRITLLDASLFTNINPSKLKRIE 41 (112)
T ss_dssp TTTCCHHHHHHHSSCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 479999999999999999999984
No 226
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=93.99 E-value=0.078 Score=34.66 Aligned_cols=36 Identities=11% Similarity=-0.052 Sum_probs=32.2
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~ 39 (163)
.|+++.+||+.++|+.++|++++++..+.|=+.-..
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 87 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKR 87 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 468999999999999999999999999999886543
No 227
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=93.98 E-value=0.041 Score=35.67 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=24.5
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
..|++..+||+.||||.++|...+.+.
T Consensus 39 ~~g~s~~EIA~~lgiS~~tV~~~l~ra 65 (113)
T 1xsv_A 39 LEDYSLSEIADTFNVSRQAVYDNIRRT 65 (113)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 479999999999999999999998665
No 228
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=93.96 E-value=0.045 Score=37.01 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=31.0
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.++++.+||+.++|+.++|++++++..+.|=+.-
T Consensus 62 ~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r 95 (162)
T 2fa5_A 62 PGSSASEVSDRTAMDKVAVSRAVARLLERGFIRR 95 (162)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEee
Confidence 5699999999999999999999999999988854
No 229
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=93.96 E-value=0.016 Score=36.50 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=27.9
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
.+++.+|||+.+|+|+++||+-|+...+. -+.
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~ 71 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK-VLK 71 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhh
Confidence 45889999999999999999999999777 444
No 230
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=93.94 E-value=0.044 Score=39.53 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=30.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.++++.+||+.|+||.++|++.+++..+.|=+.-
T Consensus 19 ~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r 52 (214)
T 3hrs_A 19 NKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIK 52 (214)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEE
Confidence 4599999999999999999999999999987743
No 231
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=93.92 E-value=0.04 Score=36.26 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=30.7
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.++++.+||+.++||.++|++.+++..+.|-+.-
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~ 77 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEESGYIIR 77 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 4689999999999999999999999999887743
No 232
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=93.91 E-value=0.041 Score=36.11 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=31.0
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.++++.+||+.+++++++|++++++..+.|=+.-
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r 80 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVCKGWVER 80 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEe
Confidence 4689999999999999999999999999988854
No 233
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=93.90 E-value=0.044 Score=34.51 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=22.5
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 39 ~~gltq~elA~~~gis~~~is~iE 62 (99)
T 3g5g_A 39 EKGMTQEDLAYKSNLDRTYISGIE 62 (99)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 479999999999999999999996
No 234
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=93.90 E-value=0.047 Score=36.52 Aligned_cols=35 Identities=11% Similarity=0.250 Sum_probs=30.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg 38 (163)
.++++.+||+.++|+.++|++++++..+-|=+.-.
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~ 87 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRT 87 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 35899999999999999999999999998888543
No 235
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=93.87 E-value=0.047 Score=36.92 Aligned_cols=33 Identities=30% Similarity=0.418 Sum_probs=29.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
.++++.+||+.|+||.++|++.|++..+.|-+.
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~ 85 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIE 85 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEE
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEE
Confidence 458999999999999999999999998888664
No 236
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=93.84 E-value=0.039 Score=35.39 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=22.4
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 20 ~~glsq~~lA~~~gis~~~i~~~e 43 (114)
T 3op9_A 20 EHGLKNHQIAELLNVQTRTVAYYM 43 (114)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 368999999999999999999997
No 237
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=93.84 E-value=0.031 Score=36.97 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=30.7
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.|+++.+||+.++|+.++|++++++..+.|-+.-
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r 75 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYR 75 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEe
Confidence 4689999999999999999999999999888754
No 238
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=93.84 E-value=0.033 Score=37.75 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=31.3
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg 38 (163)
.+++..||++.++||+++|++.|++..+.|-+.-.
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~ 70 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAV 70 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEE
Confidence 44899999999999999999999999999988543
No 239
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=93.81 E-value=0.04 Score=36.70 Aligned_cols=34 Identities=9% Similarity=0.274 Sum_probs=30.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.++++.+||+.++|+.++|++++++..+.|-+.-
T Consensus 55 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r 88 (150)
T 2rdp_A 55 GDLTVGELSNKMYLACSTTTDLVDRMERNGLVAR 88 (150)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeee
Confidence 4689999999999999999999999999887753
No 240
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=93.81 E-value=0.031 Score=37.08 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=31.1
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.|+++.+||+.++|+.++|++++++..+.|=+.-
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r 83 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVR 83 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeec
Confidence 5689999999999999999999999999998853
No 241
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=93.75 E-value=0.032 Score=37.76 Aligned_cols=35 Identities=14% Similarity=0.368 Sum_probs=31.4
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg 38 (163)
.|+++.+||+.++|+.++|++++++..+-|=+.-.
T Consensus 63 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 97 (159)
T 3s2w_A 63 DGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQ 97 (159)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 56899999999999999999999999999888543
No 242
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=93.74 E-value=0.029 Score=37.47 Aligned_cols=36 Identities=11% Similarity=0.256 Sum_probs=26.0
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~ 39 (163)
.|+++.+||+.++|+.++|++++++..+-|=+.-..
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC-
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 579999999999999999999999999999886443
No 243
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=93.72 E-value=0.05 Score=35.53 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=22.5
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 23 ~~glsq~~lA~~~gis~~~is~~E 46 (126)
T 3ivp_A 23 KQGLTREQVGAMIEIDPRYLTNIE 46 (126)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHH
Confidence 379999999999999999999996
No 244
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=93.72 E-value=0.047 Score=32.73 Aligned_cols=31 Identities=13% Similarity=0.349 Sum_probs=28.8
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
+..-+||+.||++...|-+.|..+.+.|-+.
T Consensus 30 ~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~ 60 (75)
T 1sfu_A 30 TTAISLSNRLKINKKKINQQLYKLQKEDTVK 60 (75)
T ss_dssp ECHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 7788999999999999999999999999884
No 245
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=93.70 E-value=0.037 Score=39.32 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=31.1
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
+.+++..+||+.+|||.++|++.|++..+.|-+.-
T Consensus 31 ~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~ 65 (192)
T 1uly_A 31 NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEV 65 (192)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 34589999999999999999999999988888754
No 246
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=93.66 E-value=0.035 Score=34.66 Aligned_cols=34 Identities=9% Similarity=0.173 Sum_probs=30.1
Q ss_pred CCCChhhh----HHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVI----SRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~i----a~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.++++.+| |+.++|+.++|++++++..+.|=+.-
T Consensus 21 ~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r 58 (99)
T 1tbx_A 21 EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKE 58 (99)
T ss_dssp TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEE
Confidence 46899999 89999999999999999988887754
No 247
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=93.66 E-value=0.047 Score=36.22 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=31.1
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.|+++.+||+.++|+.++|++++++..+.|=+.-
T Consensus 44 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 77 (145)
T 3g3z_A 44 GSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEW 77 (145)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEee
Confidence 4699999999999999999999999999998853
No 248
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=93.64 E-value=0.047 Score=36.65 Aligned_cols=34 Identities=6% Similarity=0.190 Sum_probs=31.0
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.++++.+||+.++|+.++|++++++..+.|-+.-
T Consensus 56 ~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r 89 (155)
T 3cdh_A 56 DAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTR 89 (155)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 4699999999999999999999999999988853
No 249
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=93.57 E-value=0.06 Score=33.38 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=24.5
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
.|.+..+||+.|+||.+||...+.+.
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i 68 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSI 68 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 79999999999999999999998776
No 250
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=93.57 E-value=0.042 Score=40.57 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=31.1
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.+++..+||+.++++.+||+++|+...+.|=+.-
T Consensus 165 ~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r 198 (244)
T 2wte_A 165 KGTGITELAKMLDKSEKTLINKIAELKKFGILTQ 198 (244)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 5799999999999999999999999999998753
No 251
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=93.54 E-value=0.053 Score=34.90 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=22.3
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 39 ~~glsq~~lA~~~gis~~~is~~E 62 (117)
T 3f52_A 39 DKGVTLRELAEASRVSPGYLSELE 62 (117)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 368999999999999999999996
No 252
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=93.53 E-value=0.032 Score=42.49 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=21.0
Q ss_pred CChhhhHHHhhcchhhHHHHHhh
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNR 28 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~ 28 (163)
++..|||+.+|||.+|||+.|+.
T Consensus 11 ~ti~diA~~agVS~~TVSr~Ln~ 33 (344)
T 3kjx_A 11 LTLRDVSEASGVSEMTVSRVLRN 33 (344)
T ss_dssp CCHHHHHHHHCCCSHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 67899999999999999999954
No 253
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=93.53 E-value=0.05 Score=35.95 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=30.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.++++.+||+.++|+.++|++++++..+.|-+.-
T Consensus 46 ~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r 79 (145)
T 2a61_A 46 GPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTR 79 (145)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeee
Confidence 4689999999999999999999999998887754
No 254
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=93.48 E-value=0.052 Score=34.90 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=22.5
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 34 ~~gltq~elA~~~gis~~~is~~E 57 (111)
T 3mlf_A 34 DYGLTQKELGDLFKVSSRTIQNME 57 (111)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 469999999999999999999996
No 255
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=93.48 E-value=0.047 Score=36.71 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=30.9
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.++++.+||+.++|+.++|++++++..+.|=+.-
T Consensus 57 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r 90 (154)
T 2eth_A 57 GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVR 90 (154)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 4689999999999999999999999999888754
No 256
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=93.47 E-value=0.039 Score=37.01 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=30.6
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.++++.+||+.++|+.++|++++++..+.|-+.-
T Consensus 60 ~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r 93 (153)
T 2pex_A 60 DERSVSEIGERLYLDSATLTPLLKRLQAAGLVTR 93 (153)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEee
Confidence 4589999999999999999999999999887753
No 257
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=93.45 E-value=0.048 Score=38.28 Aligned_cols=35 Identities=11% Similarity=0.208 Sum_probs=31.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg 38 (163)
.|+++.+||+.++|+.++|++++++..+-|=+.-.
T Consensus 56 ~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 90 (189)
T 3nqo_A 56 EETTLNNIARKMGTSKQNINRLVANLEKNGYVDVI 90 (189)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 47999999999999999999999999999988543
No 258
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=93.40 E-value=0.041 Score=36.74 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=30.9
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.++++.+||+.++|+.++|++++++..+.|-+.-
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r 86 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQRAGLIER 86 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeee
Confidence 4689999999999999999999999999988854
No 259
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=93.39 E-value=0.053 Score=36.58 Aligned_cols=32 Identities=13% Similarity=0.281 Sum_probs=28.0
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
++++.+||+.++|+.++|++++++..+-|=+.
T Consensus 52 ~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr 83 (148)
T 4fx0_A 52 DLTMSELAARIGVERTTLTRNLEVMRRDGLVR 83 (148)
T ss_dssp --CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 38999999999999999999999998888763
No 260
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.39 E-value=0.037 Score=36.44 Aligned_cols=34 Identities=15% Similarity=0.305 Sum_probs=30.5
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.++++.+||+.++|+.++|++++++..+.|-+.-
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r 82 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLERDGIVRR 82 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEe
Confidence 4689999999999999999999999998887743
No 261
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=93.39 E-value=0.049 Score=36.71 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=22.6
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 79 ~~glTq~elA~~lGis~s~is~~E 102 (141)
T 3kxa_A 79 KKGFTQSELATAAGLPQPYLSRIE 102 (141)
T ss_dssp HTTCCHHHHHHHTTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 479999999999999999999997
No 262
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=93.34 E-value=0.038 Score=37.04 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=31.1
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg 38 (163)
.|+++.+||+.++|+.++|++++++..+.|=+.-.
T Consensus 54 ~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 88 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRE 88 (149)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC-
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeC
Confidence 56899999999999999999999999999988543
No 263
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=93.34 E-value=0.043 Score=37.62 Aligned_cols=35 Identities=9% Similarity=0.274 Sum_probs=31.3
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg 38 (163)
.|+++.+||+.++|+.++|++++++..+-|=+.-.
T Consensus 67 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~ 101 (166)
T 3deu_A 67 PDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQ 101 (166)
T ss_dssp SSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEee
Confidence 56999999999999999999999999998888533
No 264
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=93.30 E-value=0.044 Score=36.75 Aligned_cols=34 Identities=9% Similarity=0.221 Sum_probs=30.9
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.++++.+||+.++|+.++|++++++..+.|=+.-
T Consensus 54 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 54 PGISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 4589999999999999999999999999888854
No 265
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=93.29 E-value=0.038 Score=33.38 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=29.3
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
++..|||+.||||.+||.+-|..+.+.|-+.-
T Consensus 25 psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R 56 (77)
T 2jt1_A 25 VKTRDIADAAGLSIYQVRLYLEQLHDVGVLEK 56 (77)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 56889999999999999999999999999853
No 266
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=93.28 E-value=0.065 Score=33.87 Aligned_cols=28 Identities=21% Similarity=0.139 Sum_probs=25.0
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQ 30 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~ 30 (163)
.+|++..|||+.|+||.+||...+.+..
T Consensus 47 ~~G~s~~EIA~~L~iS~~TV~~~l~ri~ 74 (99)
T 1p4w_A 47 AEGFLVTEIAKKLNRSIKTISSQKKSAM 74 (99)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3699999999999999999999987763
No 267
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=93.25 E-value=0.033 Score=37.08 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=35.0
Q ss_pred ccCCCChhhhHHHh-hcchhhHHHHHhhhhhccCCCCCCCCCCCCC
Q psy1904 2 AAAGVRPCVISRQL-RVSHGCVSKILNRYQETGSIRPGVIGGSKPR 46 (163)
Q Consensus 2 ~~~g~~~~~ia~~~-~vs~~~vs~~l~~~~~tG~~~Pg~~Gg~~p~ 46 (163)
...+++..+|++.+ |||+++|++.|++..+.|-+.-......++.
T Consensus 45 ~~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~ 90 (131)
T 1yyv_A 45 RDGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPH 90 (131)
T ss_dssp GGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCE
T ss_pred HcCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCe
Confidence 33458999999999 7999999999999999998864433333333
No 268
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=93.24 E-value=0.036 Score=33.87 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=23.3
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
..|-...++|+.||||.+|+++.|++|
T Consensus 52 ~~~GN~s~AA~~LGISR~TLyrKLkk~ 78 (81)
T 1umq_A 52 MCDRNVSETARRLNMHRRTLQRILAKR 78 (81)
T ss_dssp HTTSCHHHHHHHHTSCHHHHHHHHHTS
T ss_pred HhCCCHHHHHHHhCCCHHHHHHHHHHh
Confidence 345667889999999999999999887
No 269
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=93.22 E-value=0.077 Score=35.22 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=29.6
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
.++..+||+.||||.++|++.|++..+.|-+.
T Consensus 18 ~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 18 RTPFTEIAKKLGISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 48999999999999999999999999888874
No 270
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=93.21 E-value=0.045 Score=37.06 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=30.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.++++.+||+.++|+.++|++++++..+.|-+.-
T Consensus 65 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r 98 (162)
T 3cjn_A 65 DGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRR 98 (162)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEe
Confidence 4589999999999999999999999999988853
No 271
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=93.16 E-value=0.032 Score=36.59 Aligned_cols=34 Identities=9% Similarity=0.206 Sum_probs=30.6
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.++++.+||+.++|+.++|++++++..+.|-+.-
T Consensus 46 ~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r 79 (139)
T 3bja_A 46 GKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMT 79 (139)
T ss_dssp CSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeee
Confidence 4589999999999999999999999999887743
No 272
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=93.10 E-value=0.053 Score=39.24 Aligned_cols=27 Identities=11% Similarity=0.277 Sum_probs=24.2
Q ss_pred ccCCCChhhhHHHhhcchhhHHHHHhh
Q psy1904 2 AAAGVRPCVISRQLRVSHGCVSKILNR 28 (163)
Q Consensus 2 ~~~g~~~~~ia~~~~vs~~~vs~~l~~ 28 (163)
...|+++.++|+.+|||+++|++|++.
T Consensus 27 ~~~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 27 NELGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp TTTTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 457999999999999999999999743
No 273
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=93.10 E-value=0.041 Score=34.17 Aligned_cols=27 Identities=11% Similarity=0.010 Sum_probs=23.4
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
..|-...++|+.||||.+|+++.|++|
T Consensus 62 ~~~gn~~~aA~~LGIsr~tL~rklkk~ 88 (91)
T 1ntc_A 62 HTQGHKQEAARLLGWGAATLTAKLKEL 88 (91)
T ss_dssp HTTTCTTHHHHHTTCCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 345567789999999999999999887
No 274
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=93.02 E-value=0.056 Score=32.53 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=29.8
Q ss_pred CCCChhhhHHHhh----cchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLR----VSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~----vs~~~vs~~l~~~~~tG~~~P 37 (163)
.++++.|||+.|+ ++.+||+++|++..+-|-+.-
T Consensus 22 ~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r 59 (82)
T 1p6r_A 22 SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNH 59 (82)
T ss_dssp SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEE
Confidence 4589999999998 699999999999998887753
No 275
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=92.99 E-value=0.054 Score=35.90 Aligned_cols=24 Identities=8% Similarity=0.140 Sum_probs=22.2
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.|+|+++|||.+++++|.
T Consensus 14 ~~gltq~elA~~~gis~~~is~iE 37 (130)
T 3fym_A 14 RLGMTLTELEQRTGIKREMLVHIE 37 (130)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 379999999999999999999994
No 276
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=92.96 E-value=0.052 Score=34.93 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=29.8
Q ss_pred CC--hhhhHHHh-hcchhhHHHHHhhhhhccCCCCC
Q psy1904 6 VR--PCVISRQL-RVSHGCVSKILNRYQETGSIRPG 38 (163)
Q Consensus 6 ~~--~~~ia~~~-~vs~~~vs~~l~~~~~tG~~~Pg 38 (163)
.+ .+||++.+ |||++++++.|+...+.|=+.-.
T Consensus 41 ~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~ 76 (111)
T 3df8_A 41 TRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERR 76 (111)
T ss_dssp SCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEe
Confidence 56 99999999 99999999999999999988644
No 277
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=92.89 E-value=0.054 Score=41.15 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.9
Q ss_pred ChhhhHHHhhcchhhHHHHHhh
Q psy1904 7 RPCVISRQLRVSHGCVSKILNR 28 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~ 28 (163)
...|||+..|||.+|||+.|+.
T Consensus 2 ti~diA~~agVS~~TVSrvLn~ 23 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINK 23 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 5679999999999999999963
No 278
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=92.88 E-value=0.073 Score=30.26 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=23.0
Q ss_pred CCCChhhhHHHh-----hcchhhHHHHHhhh
Q psy1904 4 AGVRPCVISRQL-----RVSHGCVSKILNRY 29 (163)
Q Consensus 4 ~g~~~~~ia~~~-----~vs~~~vs~~l~~~ 29 (163)
..++..||++.| +||.+||++.|+..
T Consensus 18 ~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 18 EIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp CCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 348999999999 99999999999843
No 279
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.78 E-value=0.02 Score=39.22 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=0.0
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.+||+.+|||.++|++|.
T Consensus 12 ~~gltq~elA~~lgis~~~vs~~e 35 (158)
T 2p5t_A 12 THDLTQLEFARIVGISRNSLSRYE 35 (158)
T ss_dssp ------------------------
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 478999999999999999999994
No 280
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=92.77 E-value=0.042 Score=36.97 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=31.3
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~ 39 (163)
++++.+||+.++|+.++|++++++..+.|=+.-..
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~ 85 (147)
T 4b8x_A 51 ELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRP 85 (147)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEee
Confidence 38999999999999999999999999999885443
No 281
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=92.68 E-value=0.077 Score=33.00 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=22.0
Q ss_pred cCCCChhhhHHHhhcchhh----HHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGC----VSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~----vs~~l 26 (163)
..|+++.++|+.+|||.++ |++|.
T Consensus 12 ~~glsq~~lA~~~gis~~~~~~~is~~E 39 (98)
T 3lfp_A 12 RAGISQEKLGVLAGIDEASASARMNQYE 39 (98)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCcchhhhHHHHHH
Confidence 3689999999999999999 99986
No 282
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=92.65 E-value=0.041 Score=37.34 Aligned_cols=35 Identities=6% Similarity=0.080 Sum_probs=31.2
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg 38 (163)
.|+++.+||+.++|+.++|++++++..+.|=+.=.
T Consensus 66 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 100 (161)
T 3e6m_A 66 GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARS 100 (161)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 46899999999999999999999999999988533
No 283
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=92.64 E-value=0.045 Score=36.68 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=30.5
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.++++.+||+.++|+.++|++++++..+.|-+.-
T Consensus 50 ~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r 83 (155)
T 1s3j_A 50 GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIAR 83 (155)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEee
Confidence 4588999999999999999999999999887743
No 284
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=92.61 E-value=0.038 Score=36.63 Aligned_cols=31 Identities=10% Similarity=0.314 Sum_probs=28.6
Q ss_pred ChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
++.+||+.++|+.++|++++++..+.|-+.=
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r 82 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEAKGLVRR 82 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHHCCCEEe
Confidence 8999999999999999999999999888753
No 285
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=92.59 E-value=0.055 Score=40.90 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.8
Q ss_pred CChhhhHHHhhcchhhHHHHHhh
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNR 28 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~ 28 (163)
++..|||+..|||.+|||+.|+.
T Consensus 3 ~ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 3 VTIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 56789999999999999999954
No 286
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=92.55 E-value=0.057 Score=36.98 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=30.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.++++.+||+.++|+.++|++++++..+.|=+.-
T Consensus 58 ~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r 91 (168)
T 2nyx_A 58 GPINLATLATLLGVQPSATGRMVDRLVGAELIDR 91 (168)
T ss_dssp CSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 4689999999999999999999999999988853
No 287
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=92.53 E-value=0.017 Score=37.91 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.5
Q ss_pred CccCCCChhhhHHHhhcchhhHHHHHhh
Q psy1904 1 MAAAGVRPCVISRQLRVSHGCVSKILNR 28 (163)
Q Consensus 1 ~~~~g~~~~~ia~~~~vs~~~vs~~l~~ 28 (163)
|-+.|+++.++|+.+|||+++|++|.+-
T Consensus 1 lR~~glTQ~eLA~~~Gvs~~~is~~E~G 28 (122)
T 1nr3_A 1 MRERGWSQKKIARELKTTRQNVSAIERK 28 (122)
T ss_dssp CCCCSCSSCSTHHHHHHCCSSSCCHHHH
T ss_pred CcccCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 3458999999999999999999999754
No 288
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=92.50 E-value=0.063 Score=33.82 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=29.1
Q ss_pred ChhhhHHHhhcchhhHHHHHhhhhhccCCCCC
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg 38 (163)
+..+||+.|+||.++|++-|+.+.+.|-+.-.
T Consensus 37 s~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 78899999999999999999999999988543
No 289
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=92.46 E-value=0.1 Score=34.26 Aligned_cols=38 Identities=16% Similarity=0.345 Sum_probs=30.8
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCCC--CCCCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRP--GVIGGS 43 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P--g~~Gg~ 43 (163)
++..+||+.++|+.++|.++|....+.|=+.- |..||-
T Consensus 27 ~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy 66 (129)
T 2y75_A 27 TSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGY 66 (129)
T ss_dssp BCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCce
Confidence 78899999999999999999999999997743 434544
No 290
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=92.40 E-value=0.041 Score=39.44 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=31.2
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
+.+++.++||+.++||+++|+..|+...+.|-+.-
T Consensus 26 ~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~ 60 (202)
T 2p4w_A 26 KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIES 60 (202)
T ss_dssp HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEE
Confidence 35588999999999999999999999999998854
No 291
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=92.34 E-value=0.047 Score=36.03 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=30.5
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.++++.+||+.++|+.++|++.+++..+.|-+.-
T Consensus 50 ~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r 83 (142)
T 2bv6_A 50 SPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKR 83 (142)
T ss_dssp SEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEe
Confidence 3488999999999999999999999999888854
No 292
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=92.30 E-value=0.084 Score=35.84 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=25.2
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQ 30 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~ 30 (163)
.+|++..|||+.||||.++|...|.+-+
T Consensus 107 ~~g~s~~EIA~~lgis~~tV~~~l~rar 134 (157)
T 2lfw_A 107 MEGFSPEDAAYLIEVDTSEVETLVTEAL 134 (157)
T ss_dssp SSCCCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4799999999999999999999997653
No 293
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=92.29 E-value=0.031 Score=36.26 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=30.7
Q ss_pred CCChhhhHHHh--hcchhhHHHHHhhhhhccCCCC
Q psy1904 5 GVRPCVISRQL--RVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 5 g~~~~~ia~~~--~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.+++.+||+.+ +||..+|++-|+...+.|-+..
T Consensus 27 ~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~ 61 (111)
T 3b73_A 27 NGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQP 61 (111)
T ss_dssp CBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEe
Confidence 48999999999 9999999999999999998864
No 294
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=92.17 E-value=0.026 Score=42.76 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=0.0
Q ss_pred ccCCCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 2 AAAGVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 2 ~~~g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
...-++..|||+.+|||.+|||+.|+..
T Consensus 2 ~~~~~ti~diA~~agVS~~TVSrvln~~ 29 (332)
T 2o20_A 2 VESTTTIYDVARVAGVSMATVSRVVNGN 29 (332)
T ss_dssp ----------------------------
T ss_pred CCCCCcHHHHHHHHCCCHHHHHHHHcCC
Confidence 3444778999999999999999999753
No 295
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=92.15 E-value=0.052 Score=37.09 Aligned_cols=35 Identities=14% Similarity=0.310 Sum_probs=28.5
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg 38 (163)
.|+++.+||+.++|+.++|++++++..+-|=+.-.
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 95 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRT 95 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeec
Confidence 47999999999999999999999999998888543
No 296
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=92.13 E-value=0.043 Score=37.03 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=31.0
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.|+++.+||+.++|+.++|++++++..+.|-+.-
T Consensus 61 ~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r 94 (160)
T 3boq_A 61 DGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVK 94 (160)
T ss_dssp TCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEE
T ss_pred CCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEe
Confidence 5699999999999999999999999999888853
No 297
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=92.13 E-value=0.041 Score=36.55 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=30.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg 38 (163)
.++++.+||+.++|+.++|++++++..+.|-+.-.
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~ 87 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRK 87 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECC
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEec
Confidence 35889999999999999999999999998888543
No 298
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=92.11 E-value=0.053 Score=39.45 Aligned_cols=34 Identities=32% Similarity=0.489 Sum_probs=30.5
Q ss_pred CCCCh--hhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRP--CVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~--~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.|+++ .+||+.|+||.++|++.|++..+.|-+.-
T Consensus 21 ~~~~~~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r 56 (230)
T 1fx7_A 21 EGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRV 56 (230)
T ss_dssp HTSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 47888 99999999999999999999999987743
No 299
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=91.96 E-value=0.11 Score=38.54 Aligned_cols=34 Identities=3% Similarity=0.028 Sum_probs=31.0
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.+++..|||+.+|++.+||+++|+.+.+.|-+.-
T Consensus 37 ~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~ 70 (260)
T 2o0y_A 37 PTRSLKELVEGTKLPKTTVVRLVATMCARSVLTS 70 (260)
T ss_dssp SSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 5799999999999999999999999999887754
No 300
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=91.92 E-value=0.058 Score=39.14 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=29.4
Q ss_pred CCCCh--hhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 4 AGVRP--CVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 4 ~g~~~--~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
.|+.+ .+||+.|+|+.++|++++++..+.|=+.
T Consensus 21 ~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~GlV~ 55 (226)
T 2qq9_A 21 EGVTPLRARIAERLEQSGPTVSQTVARMERDGLVV 55 (226)
T ss_dssp HTCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 46666 9999999999999999999999888774
No 301
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=91.86 E-value=0.063 Score=41.20 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.6
Q ss_pred CChhhhHHHhhcchhhHHHHHhh
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNR 28 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~ 28 (163)
+...|||+.+|||.+|||+.|+.
T Consensus 10 ~Ti~diA~~aGVS~~TVSrvLn~ 32 (366)
T 3h5t_A 10 GTLASIAAKLGISRTTVSNAYNR 32 (366)
T ss_dssp THHHHHHHHHTSCHHHHHHHHHC
T ss_pred CCHHHHHHHhCCCHHHHHHHHCC
Confidence 56789999999999999999964
No 302
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=91.86 E-value=0.094 Score=38.02 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=28.2
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSI 35 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~ 35 (163)
.|++..++|+.|+||+++||+.+++..+.|=+
T Consensus 26 ~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~ 57 (230)
T 3cta_A 26 AYLTSSKLADMLGISQQSASRIIIDLEKNGYI 57 (230)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 45889999999999999999999999885544
No 303
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=91.84 E-value=0.076 Score=34.28 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=30.9
Q ss_pred CCCChhhhHHHhh----cchhhHHHHHhhhhhccCCCCC
Q psy1904 4 AGVRPCVISRQLR----VSHGCVSKILNRYQETGSIRPG 38 (163)
Q Consensus 4 ~g~~~~~ia~~~~----vs~~~vs~~l~~~~~tG~~~Pg 38 (163)
.++++.+||+.++ |+.+||+++|++..+-|-+.-.
T Consensus 23 ~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 23 KYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp SSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEE
Confidence 4689999999999 8899999999999998888543
No 304
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=91.83 E-value=0.12 Score=38.21 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=29.9
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
.+++..|||+.+|++.+||+++|+.+.+.|-+.
T Consensus 28 ~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~ 60 (257)
T 2g7u_A 28 PNPTLAELATEAGLSRPAVRRILLTLQKLGYVA 60 (257)
T ss_dssp SSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 469999999999999999999999998888774
No 305
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=91.82 E-value=0.12 Score=32.72 Aligned_cols=33 Identities=12% Similarity=0.299 Sum_probs=29.6
Q ss_pred ChhhhHHHhhcchhhHHHHHhhhhhccCCCCCC
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~ 39 (163)
+..+||+.|+||.++|.+-|+.+.+.|-+.-..
T Consensus 45 s~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 788999999999999999999999999885443
No 306
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=91.61 E-value=0.033 Score=42.34 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=0.0
Q ss_pred CChhhhHHHhhcchhhHHHHHhh
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNR 28 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~ 28 (163)
++..|||+.+|||.+|||+.|+.
T Consensus 7 ~ti~diA~~agVS~~TVSr~Ln~ 29 (333)
T 3jvd_A 7 SSLKEVAELAGVGYATASRALSG 29 (333)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 67889999999999999999963
No 307
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=91.60 E-value=0.11 Score=38.07 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=30.7
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg 38 (163)
+++..|||+.+|++.+||+++|+.+.+.|-+.-.
T Consensus 23 ~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 23 DVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC
Confidence 5899999999999999999999999998887543
No 308
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=91.55 E-value=0.041 Score=38.18 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=30.3
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
|+++.+||+.++|+.++|++++++..+.|-+.-
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r 118 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIER 118 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEEC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEe
Confidence 599999999999999999999999999888753
No 309
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=91.47 E-value=0.13 Score=36.48 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=27.7
Q ss_pred CCC--ChhhhHHHhhcc-hhhHHHHHhhhhhccCC
Q psy1904 4 AGV--RPCVISRQLRVS-HGCVSKILNRYQETGSI 35 (163)
Q Consensus 4 ~g~--~~~~ia~~~~vs-~~~vs~~l~~~~~tG~~ 35 (163)
.|+ ++.++|+.+||+ +++|++|++...+.|-+
T Consensus 22 ~g~~ps~~elA~~lgiss~~tv~~~~~~l~~~~~l 56 (202)
T 1jhf_A 22 TGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVI 56 (202)
T ss_dssp HSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSE
T ss_pred hCCCccHHHHHHHhCCCChHHHHHHHHHHHHCCCc
Confidence 588 899999999999 99999999988765544
No 310
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=91.45 E-value=0.089 Score=38.53 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=30.1
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
+++..|||+.+|++.+||+++|+.+.+.|=+.-
T Consensus 21 ~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~ 53 (241)
T 2xrn_A 21 GLSLAAIAQLVGLPRSTVQRIINALEEEFLVEA 53 (241)
T ss_dssp CEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 589999999999999999999999998887743
No 311
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=91.36 E-value=0.067 Score=34.03 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=26.0
Q ss_pred cCCCChhhhHH-HhhcchhhHHHHHhhhhhccCC
Q psy1904 3 AAGVRPCVISR-QLRVSHGCVSKILNRYQETGSI 35 (163)
Q Consensus 3 ~~g~~~~~ia~-~~~vs~~~vs~~l~~~~~tG~~ 35 (163)
..++++...|+ +||+|+++++.+|...+....+
T Consensus 32 ~~~isQ~~FA~~VLgrsQgtlS~lL~~PkpW~~L 65 (101)
T 1x2l_A 32 KHNIGQRVFGHYVLGLSQGSVSEILARPKPWRKL 65 (101)
T ss_dssp HTTCCHHHHHHHTTCSCHHHHHHHHHCCCCGGGC
T ss_pred HcCCCHHHHHHHHHccccchHHHHhcCCCCHHHH
Confidence 46788889998 6999999999999765444443
No 312
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=91.28 E-value=0.11 Score=36.44 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=22.6
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 22 ~~gltq~~lA~~~gis~~~is~~e 45 (192)
T 1y9q_A 22 SRGLSLDATAQLTGVSKAMLGQIE 45 (192)
T ss_dssp HTTCCHHHHHHHHSSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 479999999999999999999997
No 313
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=91.26 E-value=0.12 Score=35.72 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=33.5
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCC--CCCCCCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIR--PGVIGGSK 44 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~--Pg~~Gg~~ 44 (163)
++..+||+.++||...|.|++...++.|-+. .|..||-.
T Consensus 29 ~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy~ 69 (162)
T 3k69_A 29 VASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQ 69 (162)
T ss_dssp BCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeE
Confidence 7899999999999999999999999999884 35556553
No 314
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=91.22 E-value=0.36 Score=28.97 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=39.4
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCC--CCCCCCcCChHHHHHHH---HHHHhCCCCCchhhhhhhh
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI--GGSKPRVATPDVEKRIE---EYKKTNPNITSWEVRDKLI 76 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~--Gg~~p~~~~~~~~~~i~---~~~~~~p~~~~~e~~~~l~ 76 (163)
-+++.|+|+.+|||..|+..|-+. .|-+.|... +|.+ .=+......+. .+.. .-+++..+++.-+.
T Consensus 5 ~~~i~e~A~~~gvs~~tlR~ye~~---~gl~~p~r~~~~g~R--~Y~~~dl~~l~~I~~l~~-~~G~sl~ei~~~l~ 75 (81)
T 2jml_A 5 TLRIRTIARMTGIREATLRAWERR---YGFPRPLRSEGNNYR--VYSREEVEAVRRVARLIQ-EEGLSVSEAIAQVK 75 (81)
T ss_dssp CEEHHHHHHTTSTTHHHHHHHHHH---TCCSCCBSSSCSSSC--EECHHHHHHHHHHHHHHH-HTSTHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHh---CCCCCCcCCCCCCee--ecCHHHHHHHHHHHHHHH-HCCCCHHHHHHHHH
Confidence 467899999999999999988643 266666543 3332 23333443332 3221 23566666665554
No 315
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=91.11 E-value=0.13 Score=29.33 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.8
Q ss_pred ChhhhHHHhhcchhhHHHHHhhh
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
...++|+.||||.+|+++.+++|
T Consensus 35 n~~~aA~~LGIsr~tL~rklkk~ 57 (61)
T 1g2h_A 35 STRKLAQRLGVSHTAIANKLKQY 57 (61)
T ss_dssp SHHHHHHHTTSCTHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHHHh
Confidence 56789999999999999999887
No 316
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=91.11 E-value=0.082 Score=37.44 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=28.8
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
.+..|||+.||+|.++|++.|+...+.|-+.
T Consensus 25 ~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~ 55 (196)
T 3k2z_A 25 PSVREIARRFRITPRGALLHLIALEKKGYIE 55 (196)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHcCCCcHHHHHHHHHHHHCCCEE
Confidence 6888999999999999999999999999874
No 317
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=90.98 E-value=0.16 Score=32.06 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=23.3
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
.|.+..|||..+|||.++|..++.+-
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rA 63 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKA 63 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 67999999999999999999998553
No 318
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=90.83 E-value=0.23 Score=31.22 Aligned_cols=32 Identities=13% Similarity=0.205 Sum_probs=29.4
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
.+++.+||++++++.+++++.|.+....|=+.
T Consensus 36 ~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~ 67 (96)
T 2obp_A 36 PWSLPKIAKRAQLPMSVLRRVLTQLQAAGLAD 67 (96)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CcCHHHHHHHhCCchhhHHHHHHHHHHCCCEE
Confidence 38999999999999999999999998888774
No 319
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=90.69 E-value=0.1 Score=38.67 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=30.9
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.+++..|||+.+|++.+||+++|+.+.+.|=+.-
T Consensus 20 ~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~ 53 (260)
T 3r4k_A 20 LEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQ 53 (260)
T ss_dssp SEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999999999999999999998854
No 320
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=90.69 E-value=0.11 Score=36.37 Aligned_cols=36 Identities=8% Similarity=0.148 Sum_probs=31.2
Q ss_pred CccCCCChhhhHHHhh-cchhhHHHHHhhhhhccCCC
Q psy1904 1 MAAAGVRPCVISRQLR-VSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 1 ~~~~g~~~~~ia~~~~-vs~~~vs~~l~~~~~tG~~~ 36 (163)
|++.+...|+||+.|+ +++++||.=|+..++.|-+.
T Consensus 32 L~~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv~ 68 (182)
T 4g6q_A 32 LIGRSLTTRELAELLPDVATTTLYRQVGILVKAGVLM 68 (182)
T ss_dssp TTTSCEEHHHHHHHCTTBCHHHHHHHHHHHHHHTSEE
T ss_pred HHhCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCeE
Confidence 4566689999999996 99999999999998888774
No 321
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=90.67 E-value=0.14 Score=35.99 Aligned_cols=24 Identities=8% Similarity=0.022 Sum_probs=22.6
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+|||.++|++|.
T Consensus 21 ~~g~s~~~la~~~gis~~~ls~~e 44 (198)
T 2bnm_A 21 QVKMDHAALASLLGETPETVAAWE 44 (198)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 479999999999999999999997
No 322
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=90.33 E-value=0.15 Score=33.88 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=35.4
Q ss_pred ccCCCChhhhHHHh-hcchhhHHHHHhhhhhccCCCCCCCCCCCCC
Q psy1904 2 AAAGVRPCVISRQL-RVSHGCVSKILNRYQETGSIRPGVIGGSKPR 46 (163)
Q Consensus 2 ~~~g~~~~~ia~~~-~vs~~~vs~~l~~~~~tG~~~Pg~~Gg~~p~ 46 (163)
+...++..||++.+ +||.+++++.|++..+.|=+.-......++.
T Consensus 36 ~~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~ 81 (131)
T 4a5n_A 36 IDGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPK 81 (131)
T ss_dssp TTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCE
T ss_pred hcCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCe
Confidence 33458999999999 9999999999999999998864443433333
No 323
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=90.30 E-value=0.14 Score=34.54 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=33.6
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCC--CCCCCCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIR--PGVIGGSK 44 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~--Pg~~Gg~~ 44 (163)
++..+||+.++|+..+|.++|....+.|-+. .|..||-.
T Consensus 29 ~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~ 69 (143)
T 3t8r_A 29 ISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQ 69 (143)
T ss_dssp EEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCee
Confidence 7889999999999999999999999999884 56556653
No 324
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=90.25 E-value=0.13 Score=38.14 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=29.6
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
.+++..|||+.+|++.+||+++|+.+.+.|-+.
T Consensus 35 ~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~ 67 (265)
T 2ia2_A 35 QRRTLSDVARATDLTRATARRFLLTLVELGYVA 67 (265)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 468999999999999999999999998887664
No 325
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=90.25 E-value=0.24 Score=31.76 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=24.0
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
.+|.+..+||+.+|+|.+||+|+-+-+
T Consensus 56 ~~G~SyreIa~~tG~StaTIsRv~r~L 82 (107)
T 3frw_A 56 TDKRTYLDISEKTGASTATISRVNRSL 82 (107)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCccHHHHHHHHHHH
Confidence 479999999999999999999987554
No 326
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=90.24 E-value=0.1 Score=34.08 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=23.4
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
..|.+..+||+.+|+|.+||++.-+-.
T Consensus 73 ~~G~syreIA~~~g~S~aTIsRv~r~L 99 (119)
T 3kor_A 73 KQGYTYATIEQESGASTATISRVKRSL 99 (119)
T ss_dssp HHTCCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 468999999999999999999976544
No 327
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=90.14 E-value=0.2 Score=33.02 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=30.4
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.+.++.+||+++++|.++|.+.|+.+.+-|-+.-
T Consensus 50 ~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~ 83 (128)
T 2vn2_A 50 LFPTPAELAERMTVSAAECMEMVRRLLQKGMIAI 83 (128)
T ss_dssp SSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3489999999999999999999999999887743
No 328
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=90.05 E-value=0.057 Score=41.01 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=0.0
Q ss_pred CChhhhHHHhhcchhhHHHHHhh
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNR 28 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~ 28 (163)
++..|||+.+|||.+|||+.|+.
T Consensus 5 ~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 5 VTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 67889999999999999999964
No 329
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=89.97 E-value=0.15 Score=34.21 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=24.3
Q ss_pred CCCChhhhHHHhhc-chhhHHHHHhhh
Q psy1904 4 AGVRPCVISRQLRV-SHGCVSKILNRY 29 (163)
Q Consensus 4 ~g~~~~~ia~~~~v-s~~~vs~~l~~~ 29 (163)
.|.+..+|++.+|| |.+||++|+...
T Consensus 27 ~G~sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 27 SGESLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp TTCCHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred CCCcHHHHHhcCCCCCHHHHHHHHHcC
Confidence 79999999999999 999999999775
No 330
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=89.97 E-value=0.25 Score=33.31 Aligned_cols=37 Identities=16% Similarity=0.335 Sum_probs=30.7
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCC--CCCCCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIR--PGVIGGS 43 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~--Pg~~Gg~ 43 (163)
++..+||+.++|+..+|.+++....+.|-+. .| .||-
T Consensus 31 ~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG-~GGy 69 (149)
T 1ylf_A 31 CTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG-PGGA 69 (149)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC-CCce
Confidence 7889999999999999999999999999874 35 5554
No 331
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=89.94 E-value=0.18 Score=35.17 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=22.5
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
+.|+++.++|+.||||++++++|.
T Consensus 101 ~~glTQ~elA~~LGvsr~tis~yE 124 (170)
T 2auw_A 101 RNNLSLTTAAEALGISRRMVSYYR 124 (170)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHH
Confidence 479999999999999999999996
No 332
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=89.91 E-value=0.23 Score=31.87 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=28.7
Q ss_pred ChhhhHHHhhcchhhHHHHHhhhhhccCCCCC
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg 38 (163)
+..++|+.||||.++|.+.|......|-+.-.
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 56799999999999999999999999988544
No 333
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=89.90 E-value=0.13 Score=36.71 Aligned_cols=59 Identities=12% Similarity=0.020 Sum_probs=39.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCCCCCCC---cCChHHHHHHHHHHHh
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVEKRIEEYKKT 62 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~Gg~~p~---~~~~~~~~~i~~~~~~ 62 (163)
.|+++.+||+.++|+.++|++++++..+-|=+.-......+.. ..++.-...+......
T Consensus 61 ~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~ 122 (207)
T 2fxa_A 61 NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLEE 122 (207)
T ss_dssp TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHHHHHH
Confidence 4689999999999999999999999999998854332222211 3445555555444433
No 334
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=89.89 E-value=0.06 Score=40.82 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=0.0
Q ss_pred CChhhhHHHhhcchhhHHHHHhh
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNR 28 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~ 28 (163)
+...|||+..|||.+|||+.|+.
T Consensus 4 ~ti~diA~~agVS~~TVSrvln~ 26 (338)
T 3dbi_A 4 TTMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHCC
Confidence 45789999999999999999964
No 335
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=89.85 E-value=0.06 Score=41.63 Aligned_cols=34 Identities=9% Similarity=0.174 Sum_probs=0.0
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.|+++.|||+.|+||.+||++.|++..+.|-+.-
T Consensus 33 ~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~Glv~~ 66 (345)
T 2o0m_A 33 QPIGRRSLSETMGITERVLRTETDVLKQLNLIEP 66 (345)
T ss_dssp ----------------------------------
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 5799999999999999999999999999998853
No 336
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=89.62 E-value=0.2 Score=34.48 Aligned_cols=38 Identities=16% Similarity=0.376 Sum_probs=33.1
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCC--CCCCCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIR--PGVIGGS 43 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~--Pg~~Gg~ 43 (163)
++..+||+.++|+...|.++|....+.|-+. .|..||-
T Consensus 45 ~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy 84 (159)
T 3lwf_A 45 ISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGY 84 (159)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCce
Confidence 7899999999999999999999999999885 4555654
No 337
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=89.61 E-value=0.065 Score=41.02 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=0.0
Q ss_pred CChhhhHHHhhcchhhHHHHHhh
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNR 28 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~ 28 (163)
++..|||+.+|||.+|||+.|+.
T Consensus 13 ~ti~diA~~agVS~~TVSr~Ln~ 35 (355)
T 3e3m_A 13 VTMRDVAKAAGVSRMTVSRALKK 35 (355)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHhCCCHHHHHHHHCC
Confidence 56789999999999999999963
No 338
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=89.59 E-value=0.065 Score=40.97 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=0.0
Q ss_pred CChhhhHHHhhcchhhHHHHHhh
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNR 28 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~ 28 (163)
++..|||+.+|||.+|||+.|+.
T Consensus 9 ~ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 9 PTLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHCC
Confidence 47889999999999999999975
No 339
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=89.57 E-value=0.81 Score=29.01 Aligned_cols=66 Identities=12% Similarity=0.026 Sum_probs=40.8
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCC--CCCCCCCcCChHHHHHHHHHHH-hCCCCCchhhhhhhh
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV--IGGSKPRVATPDVEKRIEEYKK-TNPNITSWEVRDKLI 76 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~--~Gg~~p~~~~~~~~~~i~~~~~-~~p~~~~~e~~~~l~ 76 (163)
++++.|+|+.+|||..|+..|- +.|-+.|.. .+|.+ .=+......+..... ..-+++..++..-+.
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye----~~Gll~p~~r~~~g~R--~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~ 69 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYD----DIGLLVPSERSHAGHR--RYSDADLDRLQQILFYRELGFPLDEVAALLD 69 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHH----HHTSSCCSEECSSCCE--EBCHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHH----HCCCCCCCccCCCCCe--ecCHHHHHHHHHHHHHHHCCCCHHHHHHHHh
Confidence 4688999999999999999885 348888754 24433 233444433322221 123566666665543
No 340
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=89.56 E-value=0.065 Score=40.93 Aligned_cols=24 Identities=25% Similarity=0.229 Sum_probs=0.0
Q ss_pred CChhhhHHHhhcchhhHHHHHhhh
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
+...|||+.+|||.+|||+.|+..
T Consensus 4 ~ti~diA~~aGVS~~TVSrvLn~~ 27 (349)
T 1jye_A 4 VTLYDVAEYAGVSYQTVSRVVNQA 27 (349)
T ss_dssp ------------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcCC
Confidence 467899999999999999999754
No 341
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=89.54 E-value=0.15 Score=35.88 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=23.9
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
..|.++.+||++||+|.++|+++|.-.
T Consensus 50 ~~G~t~eeiA~~lG~s~s~V~~~LrLl 76 (178)
T 1r71_A 50 AKGKKKGDIAKEIGKSPAFITQHVTLL 76 (178)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHGGG
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 358999999999999999999998553
No 342
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=89.47 E-value=0.25 Score=34.38 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=29.5
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
++..+||..+|+|..+|+++|+++++.|-+.-
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~ 178 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELAREGYIRS 178 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 67899999999999999999999999998863
No 343
>1wh8_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=89.34 E-value=0.13 Score=33.16 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=26.5
Q ss_pred cCCCChhhhHH-HhhcchhhHHHHHhhhhhccCC
Q psy1904 3 AAGVRPCVISR-QLRVSHGCVSKILNRYQETGSI 35 (163)
Q Consensus 3 ~~g~~~~~ia~-~~~vs~~~vs~~l~~~~~tG~~ 35 (163)
..++++...|+ +||+++++|+.+|...+....+
T Consensus 42 ~~~isQ~~FA~~ILgrsQgtlSdlL~~PkpW~~L 75 (111)
T 1wh8_A 42 DNNLGQRLFGESILGLTQGSVSDLLSRPKPWHKL 75 (111)
T ss_dssp HTTCCHHHHHHHTTCCCHHHHHHHHHSCCCTTTS
T ss_pred HCCCcHHHHHHHHhccCcCcHHHHHcCCCCHHHH
Confidence 46788999999 9999999999999775444443
No 344
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=89.30 E-value=0.07 Score=40.32 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=0.0
Q ss_pred CChhhhHHHhhcchhhHHHHHhhh
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
++..|||+.+|||.+|||+.|+..
T Consensus 3 ~ti~diA~~agVS~~TVSrvln~~ 26 (330)
T 3ctp_A 3 ANIREIAKRAGISIATVSRHLNNT 26 (330)
T ss_dssp ------------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCC
Confidence 357899999999999999999753
No 345
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=89.28 E-value=0.26 Score=34.59 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=29.8
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
-++..+||..+|+|..+|+++|+++++.|-+.-
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~ 201 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKL 201 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 367899999999999999999999999998853
No 346
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=89.26 E-value=0.28 Score=35.10 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=44.3
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCCCCCCCcCChHHHHHHHHHHHhCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPNI 66 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~Gg~~p~~~~~~~~~~i~~~~~~~p~~ 66 (163)
..++..+||+.|+||.++|+..+++..+.|-+.-.. +| -..|+.-.+....+.+.+...
T Consensus 29 ~~V~~~~LA~~LgvS~~SV~~~lkkL~e~GLV~~~~-~G---v~LTe~G~~~A~~i~~rhr~~ 87 (200)
T 2p8t_A 29 EPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQ-RG---HFLTLKGKEIRDKLLSMFSEP 87 (200)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC---C---EEECHHHHHHHHHHHTTBCCC
T ss_pred CCccHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeC-CC---eEECHHHHHHHHHHHHHHHHh
Confidence 458899999999999999999999999999885544 33 345666666666666655543
No 347
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=89.19 E-value=0.17 Score=32.13 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=24.3
Q ss_pred ccCCCChhhhHH-HhhcchhhHHHHHhhh
Q psy1904 2 AAAGVRPCVISR-QLRVSHGCVSKILNRY 29 (163)
Q Consensus 2 ~~~g~~~~~ia~-~~~vs~~~vs~~l~~~ 29 (163)
...++++...|+ +||+++++++.+|...
T Consensus 31 ~~~~isQ~~FA~~ILgrsqgtlSdlL~~P 59 (101)
T 1wh6_A 31 AKNGICQRIFGEKVLGLSQGSVSDMLSRP 59 (101)
T ss_dssp HTTTCCHHHHHHHTTCCCHHHHHHHHHSC
T ss_pred HHcCCcHHHHHHHHHccCcCcHHHHhcCC
Confidence 356789999999 9999999999999664
No 348
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=89.16 E-value=0.17 Score=37.87 Aligned_cols=35 Identities=11% Similarity=0.178 Sum_probs=29.3
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg 38 (163)
.+++..|||+.+|++.+||+++|..+.+.|=+.-.
T Consensus 44 ~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~ 78 (275)
T 3mq0_A 44 RDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARS 78 (275)
T ss_dssp SCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEC
Confidence 45889999999999999999999999999988543
No 349
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=89.14 E-value=0.27 Score=34.39 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=29.5
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
++..+||..+|+|..+|+++|+++++.|-+.-
T Consensus 164 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 195 (216)
T 4ev0_A 164 IRHHELAALAGTSRETVSRVLHALAEEGVVRL 195 (216)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 67899999999999999999999999998863
No 350
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=88.94 E-value=0.3 Score=32.08 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=29.3
Q ss_pred ChhhhHHHhhcchhhHHHHHhhhhhccCCCCCC
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~ 39 (163)
+-.++|+.||||..+|.+-|..+...|-+.-.+
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~ 69 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKELEAQKVIRTIP 69 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence 678999999999999999999999999885443
No 351
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=88.92 E-value=0.18 Score=33.08 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=29.3
Q ss_pred ChhhhHHHhhcchhhHHHHHhhhhhccCCCCCC
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~ 39 (163)
+..++|+.||||..+|.+.|..+...|-+...+
T Consensus 39 s~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 71 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKR 71 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEec
Confidence 478999999999999999999999999886543
No 352
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=88.88 E-value=0.39 Score=32.24 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=32.6
Q ss_pred CCCChhhhHHHh-----hcchhhHHHHHhhhhhccCCCCCCCC
Q psy1904 4 AGVRPCVISRQL-----RVSHGCVSKILNRYQETGSIRPGVIG 41 (163)
Q Consensus 4 ~g~~~~~ia~~~-----~vs~~~vs~~l~~~~~tG~~~Pg~~G 41 (163)
..+++.||...| +||.+||++.|+.+.+.|-+.--..+
T Consensus 36 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~ 78 (145)
T 2fe3_A 36 AHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYG 78 (145)
T ss_dssp SCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred CCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeC
Confidence 458999999999 89999999999999999988654443
No 353
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=88.82 E-value=0.24 Score=32.00 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=29.9
Q ss_pred CCCChhhhHHHhh----cchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLR----VSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~----vs~~~vs~~l~~~~~tG~~~P 37 (163)
.|+++.|||+.|+ ++.+||+.+|++..+-|=+.=
T Consensus 23 ~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R 60 (126)
T 1sd4_A 23 KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKR 60 (126)
T ss_dssp SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEE
Confidence 4689999999998 599999999999988888753
No 354
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=88.79 E-value=0.24 Score=32.83 Aligned_cols=35 Identities=11% Similarity=0.068 Sum_probs=31.0
Q ss_pred CCCChhhhHHHhh----cchhhHHHHHhhhhhccCCCCC
Q psy1904 4 AGVRPCVISRQLR----VSHGCVSKILNRYQETGSIRPG 38 (163)
Q Consensus 4 ~g~~~~~ia~~~~----vs~~~vs~~l~~~~~tG~~~Pg 38 (163)
.++++.||++.|+ |+.+||+++|++..+-|-+.=-
T Consensus 23 ~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 23 EPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp SCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 4699999999998 8999999999999998888543
No 355
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=88.78 E-value=0.32 Score=33.16 Aligned_cols=31 Identities=3% Similarity=0.014 Sum_probs=29.3
Q ss_pred CChhhhHHHhh-cchhhHHHHHhhhhhccCCC
Q psy1904 6 VRPCVISRQLR-VSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 6 ~~~~~ia~~~~-vs~~~vs~~l~~~~~tG~~~ 36 (163)
...++|+..++ ||++||++-|+.+.+.|-+.
T Consensus 46 ~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~ 77 (151)
T 3u1d_A 46 LSVEELLYRNPDETEANLRYHVDELVDRGIVE 77 (151)
T ss_dssp BCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeE
Confidence 68899999999 99999999999999999986
No 356
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=88.73 E-value=0.3 Score=34.66 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=29.6
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
++..+||..+|+|..+|+++|+++++.|-+.-
T Consensus 176 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~ 207 (231)
T 3e97_A 176 LGTQDIMARTSSSRETVSRVLKRLEAHNILEV 207 (231)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe
Confidence 67899999999999999999999999998864
No 357
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=88.69 E-value=0.26 Score=34.52 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=27.6
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGS 34 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~ 34 (163)
++..+||+.|+||..||++-++..++.|-
T Consensus 37 ~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~ 65 (187)
T 1j5y_A 37 VSGAQLAEELSVSRQVIVQDIAYLRSLGY 65 (187)
T ss_dssp BCHHHHHHHHTSCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 89999999999999999999999988886
No 358
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=88.54 E-value=0.12 Score=38.15 Aligned_cols=53 Identities=9% Similarity=-0.004 Sum_probs=37.9
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCCCCCCC---cCChHHHHHHH
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVEKRIE 57 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~Gg~~p~---~~~~~~~~~i~ 57 (163)
++++.|||+.++|+.++|++++++..+-|=+.=.....++.. ..++.-.+.+.
T Consensus 174 ~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~ 229 (250)
T 1p4x_A 174 IVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAE 229 (250)
T ss_dssp CEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHH
Confidence 389999999999999999999999999998854333333322 33444444443
No 359
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=88.44 E-value=0.27 Score=29.45 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=18.9
Q ss_pred ChhhhHHHhhcchhhHHHHH
Q psy1904 7 RPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l 26 (163)
++.++|+.+|||.++|++|.
T Consensus 29 sq~~lA~~~gis~~~is~~E 48 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIE 48 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 77899999999999999996
No 360
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=88.41 E-value=0.32 Score=34.29 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=29.8
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.++..+||..+|+|..+|+++|+++++.|-+.-
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 199 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILER 199 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEE
Confidence 368899999999999999999999999998753
No 361
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=88.40 E-value=0.89 Score=28.87 Aligned_cols=65 Identities=11% Similarity=0.052 Sum_probs=39.8
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCCCCC--CCCCCCCcCChHHHHHHHHHHH-hCCCCCchhhhhhhh
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV--IGGSKPRVATPDVEKRIEEYKK-TNPNITSWEVRDKLI 76 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~--~Gg~~p~~~~~~~~~~i~~~~~-~~p~~~~~e~~~~l~ 76 (163)
+++.++|+.+|||..|+..|- +.|-+.|.. .+|.+ .=+......+..... ..-+++..++..-+.
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye----~~Gll~p~~~~~~g~R--~Y~~~dl~~l~~I~~l~~~G~~l~~I~~~l~ 70 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYD----NIELLNPSALTDAGYR--LYSDADLERLQQILFFKEIGFRLDEIKEMLD 70 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHH----HTTSSCCSEECTTCCE--EBCHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHH----HCCCCCCCeECCCCCe--eeCHHHHHHHHHHHHHHHCCCCHHHHHHHHh
Confidence 578999999999999999885 458888754 24433 334444443332221 122566666655543
No 362
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=88.32 E-value=0.13 Score=37.69 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=31.7
Q ss_pred ccCCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 2 AAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 2 ~~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
+...++.++||+.+|||+++|++.|+...+.|-+.-
T Consensus 22 ~~g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 22 TCMECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp TTTTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 344589999999999999999999999999998865
No 363
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=88.24 E-value=0.34 Score=34.29 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=29.3
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
++..+||..+|+|..+|+++|+++++.|-+.-
T Consensus 178 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 209 (227)
T 3d0s_A 178 LTQEEIAQLVGASRETVNKALADFAHRGWIRL 209 (227)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe
Confidence 67889999999999999999999999997764
No 364
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=88.16 E-value=0.21 Score=30.49 Aligned_cols=22 Identities=9% Similarity=0.072 Sum_probs=19.4
Q ss_pred CChhhhHHHhhcchhhHHHHHh
Q psy1904 6 VRPCVISRQLRVSHGCVSKILN 27 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~ 27 (163)
+.+..||+..||+.++||||-.
T Consensus 25 ~gQ~~vAe~~GvdeStISR~k~ 46 (83)
T 1zs4_A 25 LGTEKTAEAVGVDKSQISRWKR 46 (83)
T ss_dssp HCHHHHHHHHTSCHHHHHHHHH
T ss_pred HhhHHHHHHhCCCHHHHhhhhh
Confidence 4578899999999999999964
No 365
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=88.08 E-value=0.33 Score=31.79 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=22.9
Q ss_pred CCCChhhhHHHhh--cchhhHHHHHhhh
Q psy1904 4 AGVRPCVISRQLR--VSHGCVSKILNRY 29 (163)
Q Consensus 4 ~g~~~~~ia~~~~--vs~~~vs~~l~~~ 29 (163)
.++++.+|+..|| ||.+||++||.+.
T Consensus 76 ~~~s~~~i~~~lg~~~s~~tV~r~l~~~ 103 (141)
T 1u78_A 76 SCKTARDIRNELQLSASKRTILNVIKRS 103 (141)
T ss_dssp CCCCHHHHHHHTTCCSCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCccHHHHHHHHHHC
Confidence 3588999999999 8999999999765
No 366
>2o4a_A DNA-binding protein SATB1; protein-DNA complex, transcription, transcription/DNA complex; HET: DNA; 1.75A {Homo sapiens} SCOP: a.35.1.7 PDB: 2o49_A*
Probab=88.08 E-value=0.096 Score=32.78 Aligned_cols=26 Identities=31% Similarity=0.562 Sum_probs=23.0
Q ss_pred CCCChhhhHH-HhhcchhhHHHHHhhh
Q psy1904 4 AGVRPCVISR-QLRVSHGCVSKILNRY 29 (163)
Q Consensus 4 ~g~~~~~ia~-~~~vs~~~vs~~l~~~ 29 (163)
.++++.-.|+ +|+.|++++|.+|...
T Consensus 23 ~~isQ~~FA~~VL~rsQgtLs~lL~~P 49 (93)
T 2o4a_A 23 AGISQAVFARVAFNRTQGLLSEILRKE 49 (93)
T ss_dssp HTCCHHHHHHHHHSCCHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHhhhHHHHHHcCC
Confidence 5788899998 9999999999999764
No 367
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=88.04 E-value=0.35 Score=34.43 Aligned_cols=29 Identities=17% Similarity=0.377 Sum_probs=26.8
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSI 35 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~ 35 (163)
++..+||..+|+|..+|+++|+++++.| +
T Consensus 179 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g-i 207 (237)
T 3fx3_A 179 YDKMLIAGRLGMKPESLSRAFSRLKAAG-V 207 (237)
T ss_dssp SCTHHHHHHTTCCHHHHHHHHHHHGGGT-E
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCC-e
Confidence 4578999999999999999999999999 5
No 368
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=87.96 E-value=0.21 Score=31.48 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=28.9
Q ss_pred CCCChhhhHHHhh----cchhhHHHHHhhhhhccCCC
Q psy1904 4 AGVRPCVISRQLR----VSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 4 ~g~~~~~ia~~~~----vs~~~vs~~l~~~~~tG~~~ 36 (163)
.++++.||++.|+ ++.+||+++|++..+-|-+.
T Consensus 48 ~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~ 84 (99)
T 2k4b_A 48 GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLS 84 (99)
T ss_dssp SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCE
T ss_pred CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEE
Confidence 4689999999997 57999999999999888774
No 369
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=87.95 E-value=0.36 Score=34.77 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=29.3
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
++..+||..+|+|..+|+++|+++++.|-+.-
T Consensus 194 lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~ 225 (243)
T 3la7_A 194 LSHQAIAEAIGSTRVTVTRLLGDLREKKMISI 225 (243)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEE
Confidence 67899999999999999999999999998763
No 370
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=87.93 E-value=0.28 Score=38.24 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=29.6
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
..++..|||+.+|+|.+||+++++.+.+.|-+..
T Consensus 32 ~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~ 65 (380)
T 2hoe_A 32 SPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVE 65 (380)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 3489999999999999999999999988776643
No 371
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=87.92 E-value=0.36 Score=31.85 Aligned_cols=33 Identities=12% Similarity=0.062 Sum_probs=29.1
Q ss_pred ChhhhHHHhhcchhhHHHHHhhhhhccCCCCCC
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~ 39 (163)
+-.++|+.||||..+|.+-|......|-+...+
T Consensus 30 se~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~ 62 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTLLVEAGILYKKR 62 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEET
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEec
Confidence 667999999999999999999999999885443
No 372
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=87.86 E-value=0.27 Score=34.05 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=29.4
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
++..+||..+|+|..+|+++|+++++.|-+.-
T Consensus 140 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~ 171 (195)
T 3b02_A 140 VSHEEIADATASIRESVSKVLADLRREGLIAT 171 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 67899999999999999999999999998763
No 373
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=87.80 E-value=0.31 Score=32.09 Aligned_cols=37 Identities=11% Similarity=0.060 Sum_probs=31.5
Q ss_pred CCCChhhhHHHh-----hcchhhHHHHHhhhhhccCCCCCCC
Q psy1904 4 AGVRPCVISRQL-----RVSHGCVSKILNRYQETGSIRPGVI 40 (163)
Q Consensus 4 ~g~~~~~ia~~~-----~vs~~~vs~~l~~~~~tG~~~Pg~~ 40 (163)
..+++.||.+.+ +||.+||++.|+.+.+.|-+.--..
T Consensus 25 ~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 25 DFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 347899999999 8999999999999999998865443
No 374
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=87.71 E-value=0.37 Score=34.73 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=29.9
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
-++..+||..+|+|..+|+++|+++++.|-+.-
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~ 209 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDK 209 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEe
Confidence 368899999999999999999999999998864
No 375
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=87.66 E-value=0.41 Score=33.80 Aligned_cols=32 Identities=22% Similarity=0.158 Sum_probs=29.7
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
++..+||..+|+|..+|+++|+++++.|-+.-
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~ 195 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYISR 195 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEE
Confidence 68899999999999999999999999998864
No 376
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=87.41 E-value=0.38 Score=34.15 Aligned_cols=33 Identities=3% Similarity=-0.017 Sum_probs=29.8
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
-++..+||..+|+|..+|+++|+++++.|-+.-
T Consensus 180 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 212 (232)
T 2gau_A 180 YLSREELATLSNMTVSNAIRTLSTFVSERMLAL 212 (232)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEee
Confidence 368899999999999999999999999998753
No 377
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=87.41 E-value=0.4 Score=30.79 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=22.9
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
.++..+||+..+||.+||.|..++.
T Consensus 39 ~~si~elA~~~~vS~aTv~Rf~kkl 63 (111)
T 2o3f_A 39 ESTVNEISALANSSDAAVIRLCXSL 63 (111)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hcCHHHHHHHHCCCHHHHHHHHHHc
Confidence 5789999999999999999998776
No 378
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=87.12 E-value=0.44 Score=31.44 Aligned_cols=31 Identities=16% Similarity=0.137 Sum_probs=27.7
Q ss_pred ChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
+-.++|+.||||..||.+-|......|-+.-
T Consensus 40 ser~La~~~gVSr~tVReAl~~L~~eGlv~~ 70 (134)
T 4ham_A 40 SIREFASRIGVNPNTVSKAYQELERQEVIIT 70 (134)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE
Confidence 4578999999999999999999999998843
No 379
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=87.06 E-value=0.38 Score=37.70 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=30.0
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
..++..|||+.+|+|.+||+++++.+.+.|-+..
T Consensus 29 ~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 29 GPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp CSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 3499999999999999999999999988777644
No 380
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=86.99 E-value=0.56 Score=31.42 Aligned_cols=38 Identities=11% Similarity=0.281 Sum_probs=32.0
Q ss_pred ChhhhHHHhhcchhhHHHHHhhhhhccCCC--CCCCCCCCC
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRYQETGSIR--PGVIGGSKP 45 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~--Pg~~Gg~~p 45 (163)
+..+||+.++|+...+.+||....+.|-+. .| .||-.+
T Consensus 25 s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy~L 64 (145)
T 1xd7_A 25 SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGASL 64 (145)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSCEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCcee
Confidence 788999999999999999999999999773 35 565543
No 381
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=86.98 E-value=0.36 Score=38.21 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=30.3
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
..++..|||+.+|+|.+||+++++.+.+.|-+..
T Consensus 52 ~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~ 85 (429)
T 1z05_A 52 GPISRIDLSKESELAPASITKITRELIDAHLIHE 85 (429)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 3489999999999999999999999988887654
No 382
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=86.62 E-value=0.35 Score=33.61 Aligned_cols=21 Identities=5% Similarity=0.205 Sum_probs=19.8
Q ss_pred ChhhhHHHhhcchhhHHHHHh
Q psy1904 7 RPCVISRQLRVSHGCVSKILN 27 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~ 27 (163)
++.++|+.+|||+++|++|++
T Consensus 22 tq~elA~~~Gis~~~i~~~e~ 42 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYT 42 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHH
T ss_pred CHHHHHHHhCcCHHHHHHHHh
Confidence 889999999999999999984
No 383
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=86.43 E-value=0.89 Score=30.64 Aligned_cols=36 Identities=14% Similarity=0.043 Sum_probs=29.4
Q ss_pred CCCChhhhHHHh----------hcchhhHHHHHhhhhhccCCCCCC
Q psy1904 4 AGVRPCVISRQL----------RVSHGCVSKILNRYQETGSIRPGV 39 (163)
Q Consensus 4 ~g~~~~~ia~~~----------~vs~~~vs~~l~~~~~tG~~~Pg~ 39 (163)
.++++.+|+..| .||.+||.+||.++...|.-.|-.
T Consensus 100 ~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~~~~~~ 145 (159)
T 2k27_A 100 PTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMD 145 (159)
T ss_dssp SSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCSCCCCC
T ss_pred ccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCCccCccc
Confidence 357888999988 489999999999998887766643
No 384
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=86.08 E-value=0.46 Score=34.02 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=29.4
Q ss_pred CCChhhhHHHhhcchh-hHHHHHhhhhhccCCCC
Q psy1904 5 GVRPCVISRQLRVSHG-CVSKILNRYQETGSIRP 37 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~-~vs~~l~~~~~tG~~~P 37 (163)
.++..+||..+|+|.+ +|+++|+++++.|-+.-
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~ 202 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVY 202 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEe
Confidence 4678999999999995 99999999999998753
No 385
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=86.03 E-value=0.55 Score=29.95 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.9
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
.++..+||+..+||.+||.|..++.
T Consensus 35 ~~si~elA~~~~vS~aTv~Rf~kkL 59 (107)
T 3iwf_A 35 NMTSQEIANQLETSSTSIIRLSKKV 59 (107)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HCCHHHHHHHHCCCHHHHHHHHHHh
Confidence 4788999999999999999998776
No 386
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=85.90 E-value=0.21 Score=31.45 Aligned_cols=25 Identities=12% Similarity=0.045 Sum_probs=21.1
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhh
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNR 28 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~ 28 (163)
.++.+..+|+.+||+.++||+|-..
T Consensus 22 a~~gq~~vA~~iGV~~StISR~k~~ 46 (97)
T 1xwr_A 22 AMLGTEKTAEAVGVDKSQISRWKRD 46 (97)
T ss_dssp HHHCHHHHHHHHTCCTTTHHHHHHH
T ss_pred HHHhHHHHHHHhCCCHHHHHHHHhh
Confidence 3467889999999999999998643
No 387
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=85.82 E-value=0.02 Score=39.78 Aligned_cols=30 Identities=13% Similarity=0.037 Sum_probs=21.7
Q ss_pred cccccccCcCCHHHHHHHHHhccCCCCCCH
Q psy1904 96 RKQRRSRTTFTSAQLEELEKSFQRSHYPDI 125 (163)
Q Consensus 96 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~ 125 (163)
.+.+|.||.|+..|+..|+..|+.++||+.
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 346789999999999999999999999864
No 388
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=85.44 E-value=0.57 Score=31.03 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=31.4
Q ss_pred CCChhhhHHHh-----hcchhhHHHHHhhhhhccCCCCCCC
Q psy1904 5 GVRPCVISRQL-----RVSHGCVSKILNRYQETGSIRPGVI 40 (163)
Q Consensus 5 g~~~~~ia~~~-----~vs~~~vs~~l~~~~~tG~~~Pg~~ 40 (163)
.+++.||.+.| +||.+||++.|+.+.+.|-+.--..
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 74 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNF 74 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECS
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 48999999999 8999999999999999998865443
No 389
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=85.21 E-value=0.49 Score=28.55 Aligned_cols=33 Identities=6% Similarity=0.252 Sum_probs=30.1
Q ss_pred CCCChhhhHHHhhcchh-hHHHHHhhhhhccCCC
Q psy1904 4 AGVRPCVISRQLRVSHG-CVSKILNRYQETGSIR 36 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~-~vs~~l~~~~~tG~~~ 36 (163)
.+.++.+||+.|||+.. .|.+.|....+-|-+.
T Consensus 24 g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 24 SDSSALNLAKNIGLTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEE
T ss_pred CCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEE
Confidence 34789999999999999 9999999999999886
No 390
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=85.21 E-value=0.49 Score=36.14 Aligned_cols=31 Identities=13% Similarity=0.137 Sum_probs=28.7
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
++..+||+.|+||..||.+-|+..++.|-+.
T Consensus 20 ~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i 50 (321)
T 1bia_A 20 HSGEQLGETLGMSRAAINKHIQTLRDWGVDV 50 (321)
T ss_dssp BCHHHHHHHHTSCHHHHHHHHHHHHHTTCCC
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHhCCCcE
Confidence 8999999999999999999999999888664
No 391
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=85.20 E-value=2.9 Score=27.91 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=40.4
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCCCC-CC-CCCCCCcCChHHHHHH---HHHHHhCCCCCchhhhhhhh
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG-VI-GGSKPRVATPDVEKRI---EEYKKTNPNITSWEVRDKLI 76 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg-~~-Gg~~p~~~~~~~~~~i---~~~~~~~p~~~~~e~~~~l~ 76 (163)
.+++.++|+.+|||..|+.-|- +.|-+.|. .. +|.+ .=+......+ ..+. .-+++..+++.-+.
T Consensus 2 ~~~I~e~A~~~gvs~~tLR~Ye----~~GLl~p~~r~~~g~R--~Y~~~dl~~l~~I~~lr--~~G~sL~eIk~~l~ 70 (142)
T 3gp4_A 2 SLNIKEASEKSGVSADTIRYYE----RIGLIPPIHRNESGVR--KFGAEDLRWILFTRQMR--RAGLSIEALIDYLA 70 (142)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHH----HHTSSCCCCBCTTSCB--CBCHHHHHHHHHHHHHH--HTTCCHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHH----HCCCCCCCcCCCCCCe--eeCHHHHHHHHHHHHHH--HcCCCHHHHHHHHH
Confidence 3688999999999999998875 44888883 32 3333 2334444433 3332 23677777665543
No 392
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=84.83 E-value=0.57 Score=31.20 Aligned_cols=34 Identities=12% Similarity=0.078 Sum_probs=30.9
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
.+.++.+||+++|+|.++|.++|.+..+-|-+.-
T Consensus 50 ~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp CSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 5689999999999999999999999988888764
No 393
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=84.48 E-value=1.7 Score=29.16 Aligned_cols=66 Identities=11% Similarity=0.083 Sum_probs=40.5
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCC--CCCCCCCcCChHHHHHHHHHHH-hCCCCCchhhhhhh
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV--IGGSKPRVATPDVEKRIEEYKK-TNPNITSWEVRDKL 75 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~--~Gg~~p~~~~~~~~~~i~~~~~-~~p~~~~~e~~~~l 75 (163)
..+++.|+|+.+|||..|+.-|- +.|-+.|.. .+|.+ .=+......+..+.. ..-+++..+++.-+
T Consensus 3 ~~~tI~evA~~~Gvs~~tLR~ye----~~GLl~p~~r~~~g~R--~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l 71 (146)
T 3hh0_A 3 LAWLISEFASVGDVTVRALRYYD----KINLLKPSDYTEGGHR--LYTKDDLYVLQQIQSFKHLGFSLGEIQNII 71 (146)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHH----HTTSSCCSEECTTSCE--EBCHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHH----HCCCCCCCeECCCCCE--eeCHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 35789999999999999988875 559998853 24433 334444444432221 12356666665544
No 394
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=84.24 E-value=0.31 Score=35.99 Aligned_cols=131 Identities=8% Similarity=-0.017 Sum_probs=72.0
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCCCCCCC---cCChHHHHHHHHHHHhCCCCCchhhhhhhhhhcc
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVEKRIEEYKKTNPNITSWEVRDKLIKVSR 80 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~Gg~~p~---~~~~~~~~~i~~~~~~~p~~~~~e~~~~l~~~~~ 80 (163)
.|+++.|||+.++++.++|.++|++..+.|=+.=.....++.. ..++.-.+.+.......- +....+..+ .
T Consensus 49 ~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~~~~~~~~-----~~~eq~s~E-~ 122 (250)
T 1p4x_A 49 NTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAERVTLFD-----QIIKQFNLA-D 122 (250)
T ss_dssp SEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHHHHHHH-----HHHHHHHHH-T
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHHHHHHHHH-----HHHHHHhcc-c
Confidence 4799999999999999999999999999998854433334333 234444444433332221 112333333 1
Q ss_pred CCCCCCCCCCcccc---cc------ccccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccc
Q psy1904 81 LDDSDTESEPGIVL---KR------KQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRV 142 (163)
Q Consensus 81 ~~~~~~~~~~~~~~---~~------~~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v 142 (163)
.+-+.-.+-..... .. ...-...-+|..|...|......... .....+||..++++...|
T Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gLt~~q~~vL~~L~~~~~~--~~t~~eLa~~l~i~~~tv 191 (250)
T 1p4x_A 123 QSESQMIPKDSKEFLNLMMYTMYFKNIIKKHLTLSFVEFTILAIITSQNKN--IVLLKDLIETIHHKYPQT 191 (250)
T ss_dssp TCCSSCSCCSHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHTTTTC--CEEHHHHHHHSSSCHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhCCCC--CcCHHHHHHHHCCChhhH
Confidence 11110000000000 00 00112456888998888877655421 123457888888876543
No 395
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=84.15 E-value=2.3 Score=28.12 Aligned_cols=65 Identities=9% Similarity=0.097 Sum_probs=39.9
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCCCCC--CCCCCCCcCChHHHHHHHHHHH-hCCCCCchhhhhhhh
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV--IGGSKPRVATPDVEKRIEEYKK-TNPNITSWEVRDKLI 76 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~--~Gg~~p~~~~~~~~~~i~~~~~-~~p~~~~~e~~~~l~ 76 (163)
+++.|+|+.+|||..|+..|- +.|-+.|.. .+|.+ .=+......+..+.. ..-+++..++..-+.
T Consensus 1 ~~I~e~A~~~gvs~~tLR~ye----~~Gll~p~~r~~~g~R--~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~ 68 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFYE----EKGLVTPPMRSENGYR--TYTQQHLNELTLLRQARQVGFNLEESGELVN 68 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHHH----HTTCSCCCEECTTSCE--ECCHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHH----HCCCCCCCccCCCCCe--eeCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 468899999999999998875 458887752 34433 233444443322211 123677777766554
No 396
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=84.11 E-value=0.88 Score=30.68 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=31.1
Q ss_pred CCCChhhhHHHh-----hcchhhHHHHHhhhhhccCCCCCC
Q psy1904 4 AGVRPCVISRQL-----RVSHGCVSKILNRYQETGSIRPGV 39 (163)
Q Consensus 4 ~g~~~~~ia~~~-----~vs~~~vs~~l~~~~~tG~~~Pg~ 39 (163)
..+++.||.+.+ +||.+||++.|+.+.+.|-+.--.
T Consensus 41 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 41 THLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp SCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEE
Confidence 358899999998 799999999999999999886543
No 397
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=83.98 E-value=0.66 Score=33.77 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=23.4
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNR 28 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~ 28 (163)
..|+++.+||+.||+|.++|+++|.-
T Consensus 132 ~~g~t~~~iA~~lG~s~~~V~~~l~l 157 (230)
T 1vz0_A 132 EMGLTQEEVARRVGKARSTVANALRL 157 (230)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHG
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 46899999999999999999999854
No 398
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=83.58 E-value=0.97 Score=28.06 Aligned_cols=51 Identities=16% Similarity=0.108 Sum_probs=37.9
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCCCCCCCcCChHHHHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEE 58 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~Gg~~p~~~~~~~~~~i~~ 58 (163)
.|+.+.+||..+++|.+++++.+....+.|=+.-.. ++ -..|+.-.+.+..
T Consensus 19 ~~~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~~-~~---~~LT~kG~~~l~~ 69 (95)
T 1r7j_A 19 SGSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEG-KQ---YMLTKKGEELLED 69 (95)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TE---EEECHHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEC-Ce---eEEChhHHHHHHH
Confidence 358999999999999999999999999999886442 22 4455555544433
No 399
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.42 E-value=0.67 Score=29.03 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=29.0
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhhhccCC
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSI 35 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~ 35 (163)
..||-..||+.+.++++++|.++|+++..-+-+
T Consensus 51 n~GIw~kdL~~~tnL~~~~vtkiLK~LE~k~lI 83 (95)
T 2yu3_A 51 NKGIWSRDVRYKSNLPLTEINKILKNLESKKLI 83 (95)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSE
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCE
Confidence 478999999999999999999999999665544
No 400
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=83.39 E-value=0.21 Score=31.65 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.5
Q ss_pred CCCChhhhHH-HhhcchhhHHHHHhhh
Q psy1904 4 AGVRPCVISR-QLRVSHGCVSKILNRY 29 (163)
Q Consensus 4 ~g~~~~~ia~-~~~vs~~~vs~~l~~~ 29 (163)
.++++.-.|+ +|+.|+++++.+|+..
T Consensus 33 ~~isQ~~FA~~VL~rsQgtLs~lLr~P 59 (101)
T 1wiz_A 33 ASVSQAVFARVAFNRTQGLLSEILRKE 59 (101)
T ss_dssp HTCCHHHHHHHHHSCCHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHhhhHHHHHHcCC
Confidence 5688888888 8999999999999654
No 401
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=83.03 E-value=0.75 Score=33.41 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=32.5
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGS 43 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~Gg~ 43 (163)
++..++|+.||||.++|.+-|......|-+.-.+.+|.
T Consensus 50 L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~~~G~ 87 (237)
T 3c7j_A 50 LRQQELATLFGVSRMPVREALRQLEAQSLLRVETHKGA 87 (237)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEE
T ss_pred eCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCce
Confidence 67889999999999999999999999998865544444
No 402
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=82.99 E-value=0.35 Score=31.71 Aligned_cols=33 Identities=12% Similarity=-0.007 Sum_probs=28.2
Q ss_pred ChhhhHHHhhcchhhHHHHHhhhhhccCCCCCC
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~ 39 (163)
+..++|+.||||..+|.+.+......|-+...+
T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 69 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYLQSQEVIYNKR 69 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEET
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEc
Confidence 567899999999999999999999999886543
No 403
>4fcy_A Transposase; rnaseh, DDE transposase, DNA binding protein-DNA complex; HET: DNA; 3.71A {Enterobacteria phage MU} PDB: 2ezk_A 2ezl_A 2ezh_A 2ezi_A
Probab=82.87 E-value=2 Score=34.77 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=21.7
Q ss_pred hhhHHHhhcchhhHHHHHhhhhhcc
Q psy1904 9 CVISRQLRVSHGCVSKILNRYQETG 33 (163)
Q Consensus 9 ~~ia~~~~vs~~~vs~~l~~~~~tG 33 (163)
..+|+.+|||..|+++|+.+|+..|
T Consensus 56 ~~~a~~~gvS~~Tl~rW~~~y~~~~ 80 (529)
T 4fcy_A 56 ATVAGHYQVSASTLRDKYYQVQKFA 80 (529)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHTSC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 4578999999999999999997654
No 404
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=81.94 E-value=0.64 Score=31.60 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=22.5
Q ss_pred CChhhhHHHh-----hcchhhHHHHHhhh
Q psy1904 6 VRPCVISRQL-----RVSHGCVSKILNRY 29 (163)
Q Consensus 6 ~~~~~ia~~~-----~vs~~~vs~~l~~~ 29 (163)
.++.|+++.| +||++||||-|+..
T Consensus 20 ~tq~eL~~~L~~~G~~VtqaTisRDL~eL 48 (149)
T 1b4a_A 20 ETQDELVDRLREAGFNVTQATVSRDIKEM 48 (149)
T ss_dssp CSHHHHHHHHHHTTCCCCHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCCCcCHHHHHHHHHHc
Confidence 7899999999 99999999999877
No 405
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=81.68 E-value=1.1 Score=33.23 Aligned_cols=28 Identities=18% Similarity=0.118 Sum_probs=25.2
Q ss_pred cCCCChhhhHHHhhcchhhHHHHHhhhh
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKILNRYQ 30 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l~~~~ 30 (163)
.+|.+..|||++|+||..||...+.+..
T Consensus 210 ~~G~s~~eIA~~l~is~~TV~~~~~~~~ 237 (265)
T 3qp6_A 210 SRGKTNWEIATILNISERTVKFHVANVI 237 (265)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3799999999999999999999997763
No 406
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=81.28 E-value=0.44 Score=34.84 Aligned_cols=35 Identities=9% Similarity=0.070 Sum_probs=31.3
Q ss_pred ccCCCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 2 AAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 2 ~~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
+..+..+.+||+.+|++.++|+..|.+..+.|.+.
T Consensus 175 ~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~ 209 (232)
T 2qlz_A 175 LNGRATVEELSDRLNLKEREVREKISEMARFVPVK 209 (232)
T ss_dssp HSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE
T ss_pred hcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE
Confidence 34568899999999999999999999999999885
No 407
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=81.24 E-value=3.1 Score=27.90 Aligned_cols=66 Identities=9% Similarity=0.002 Sum_probs=41.3
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCC-C-CCCCCCcCChHHHHHHHHHHH-hCCCCCchhhhhhhh
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV-I-GGSKPRVATPDVEKRIEEYKK-TNPNITSWEVRDKLI 76 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~-~-Gg~~p~~~~~~~~~~i~~~~~-~~p~~~~~e~~~~l~ 76 (163)
-+++.|+|+.+|||..|+.-|- +.|-+.|.. . +|. +.=+......+..+.. ..-+++..+++.-+.
T Consensus 16 ~~~I~evA~~~gvs~~tLR~Ye----~~Gll~p~~r~~~g~--R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~ 84 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIRYYD----KQGLFPFLQRNEKGD--RIFNEEALKYLEMILCLKNTGMPIQKIKQFID 84 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHH----HTTCCTTCEECTTCC--EEBCHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred ceeHHHHHHHHCcCHHHHHHHH----HCCCCCCCcCCCCCC--eecCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4679999999999999988774 568887633 2 333 3334444444432222 234677777666554
No 408
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=81.23 E-value=0.81 Score=31.10 Aligned_cols=40 Identities=20% Similarity=0.401 Sum_probs=33.9
Q ss_pred CC-CChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCCCC
Q psy1904 4 AG-VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGS 43 (163)
Q Consensus 4 ~g-~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~Gg~ 43 (163)
+| ++-.+||+.||+|+|-|.-+|.....-|-+.--..|-.
T Consensus 22 ~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~GK~ 62 (165)
T 2vxz_A 22 DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNV 62 (165)
T ss_dssp TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEETTE
T ss_pred hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceEEEEEccE
Confidence 55 77889999999999999999999999998876555644
No 409
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=80.99 E-value=1.5 Score=31.20 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=31.2
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGS 43 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~Gg~ 43 (163)
++-.++|+.||||.++|..-|++....|=+.-.+..|.
T Consensus 40 L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~~~G~ 77 (222)
T 3ihu_A 40 LVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRHRGA 77 (222)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSTTCE
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCe
Confidence 45678999999999999999999999998854443444
No 410
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=80.91 E-value=0.72 Score=33.81 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=20.6
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
.|+++.++|+.+ ||.++||+|.
T Consensus 17 ~~~tq~~la~~~-~s~~~is~~e 38 (293)
T 2qfc_A 17 RGLTQKQLSENI-CHQSEVSRIE 38 (293)
T ss_dssp HTCCTTTTTTTT-SCHHHHHHHH
T ss_pred cCCCHHHHHHHH-cCHHHHHHHH
Confidence 589999999999 9999999995
No 411
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=80.80 E-value=1 Score=25.35 Aligned_cols=30 Identities=23% Similarity=0.237 Sum_probs=27.1
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSI 35 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~ 35 (163)
+....+|+.|||+.-.|..+|++..+-|-+
T Consensus 26 ldI~~~a~kygV~kdeV~~~LrrLe~KGLI 55 (59)
T 2xvc_A 26 LDIEHFSKVYGVEKQEVVKLLEALKNKGLI 55 (59)
T ss_dssp EEHHHHHHHHCCCHHHHHHHHHHHHHTTSE
T ss_pred EeHHHHHHHhCCCHHHHHHHHHHHHHCCCe
Confidence 678899999999999999999999887754
No 412
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=80.78 E-value=1.1 Score=29.93 Aligned_cols=25 Identities=8% Similarity=0.061 Sum_probs=21.9
Q ss_pred ChhhhHHHhhcchhhHHHHHhhhhh
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRYQE 31 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~~~ 31 (163)
+....|+.|+||+++||+.++...+
T Consensus 40 S~s~AA~~L~iSqsavS~~I~~LE~ 64 (135)
T 2ijl_A 40 SISAAGRAMDMSYRRAWLLVDALNH 64 (135)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5667899999999999999999844
No 413
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=80.72 E-value=0.49 Score=37.75 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=32.3
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCC
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI 40 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~ 40 (163)
.|+++.+||++++++.++|+++|++..+.|=+.=...
T Consensus 419 ~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~~ 455 (487)
T 1hsj_A 419 NEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRS 455 (487)
T ss_dssp SEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEEC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCC
Confidence 4699999999999999999999999999998854433
No 414
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=80.58 E-value=1 Score=33.01 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=21.3
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+ ||.++|++|.
T Consensus 16 ~~~~tq~~la~~~-~s~~~~s~~e 38 (293)
T 3u3w_A 16 LRGLTQKQLSENI-CHQSEVSRIE 38 (293)
T ss_dssp HTTCCHHHHHTTT-SCHHHHHHHH
T ss_pred HCCCCHHHHHHHh-CCHHHHHHHH
Confidence 3799999999999 9999999995
No 415
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=80.49 E-value=0.93 Score=30.56 Aligned_cols=34 Identities=15% Similarity=0.386 Sum_probs=29.8
Q ss_pred CCChhhhHHHh-----hcchhhHHHHHhhhhhccCCCCC
Q psy1904 5 GVRPCVISRQL-----RVSHGCVSKILNRYQETGSIRPG 38 (163)
Q Consensus 5 g~~~~~ia~~~-----~vs~~~vs~~l~~~~~tG~~~Pg 38 (163)
.+++.||.+.| +||.+||++.|+.+.+.|-+.--
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 71 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRH 71 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 47889999988 79999999999999999988643
No 416
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=80.23 E-value=2.3 Score=28.78 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=39.1
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCC-CCCCCCcCChHHHH---HHHHHHHhCCCCCchhhhhhh
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI-GGSKPRVATPDVEK---RIEEYKKTNPNITSWEVRDKL 75 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~-Gg~~p~~~~~~~~~---~i~~~~~~~p~~~~~e~~~~l 75 (163)
-+++.++|+.+|||..|+..|- +.|-+.|... +|.+-. +..... .|..+.+. +++..++..-+
T Consensus 11 ~~~i~e~A~~~gvs~~TLR~ye----~~Gll~p~r~~~g~R~Y--~~~dl~~l~~I~~lr~~--G~sl~eI~~~l 77 (154)
T 2zhg_A 11 LLTPGEVAKRSGVAVSALHFYE----SKGLITSIRNSGNQRRY--KRDVLRYVAIIKIAQRI--GIPLATIGEAF 77 (154)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHH----HTTSSCCEECTTSCEEB--CTTHHHHHHHHHHHHHH--TCCHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHH----HcCCCCcccCCCCCEEe--CHHHHHHHHHHHHHHHC--CCCHHHHHHHH
Confidence 4789999999999999998875 4587877543 443322 223333 33333332 56666665544
No 417
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=80.14 E-value=1.1 Score=33.85 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=21.7
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
.|+++.|+|...|||.+++++|.
T Consensus 24 ~gLtqeelA~~~gvS~~~is~iE 46 (292)
T 3pxp_A 24 RVWTQEVLAERTQLPKRTIERIE 46 (292)
T ss_dssp CBCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHH
Confidence 68999999999999999999985
No 418
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=79.99 E-value=1.3 Score=31.20 Aligned_cols=25 Identities=8% Similarity=0.137 Sum_probs=22.3
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
.-.+.++|+++|||.+.|++.|+-.
T Consensus 42 ~~~Q~~lA~~~giS~a~VSR~L~~A 66 (189)
T 3mky_B 42 AGNISALADAENISRKIITRCINTA 66 (189)
T ss_dssp TTCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHh
Confidence 3789999999999999999999654
No 419
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=79.68 E-value=0.45 Score=28.55 Aligned_cols=33 Identities=9% Similarity=0.206 Sum_probs=28.8
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCC-CCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSI-RPG 38 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~-~Pg 38 (163)
+++.|||+.+||-.--|++.+++...-|.+ .|+
T Consensus 35 lkageIae~~GvdKKeVdKaik~LKkEgkI~SPk 68 (80)
T 2lnb_A 35 VKLAQLVKECQAPKRELNQVLYRMKKELKVSLTS 68 (80)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHcCCccCCC
Confidence 789999999999999999999999877766 443
No 420
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=79.31 E-value=0.84 Score=30.59 Aligned_cols=34 Identities=6% Similarity=0.179 Sum_probs=31.4
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCCCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~ 39 (163)
|.|..||.+|+|+-|...++|+.+...|.+.+-.
T Consensus 64 ITpsvlseRlkI~gSLARkaLreL~~kGlIk~V~ 97 (143)
T 2xzm_8 64 LTVSTVVEKLKVNGSLARQLMRTMADRKLVEKVA 97 (143)
T ss_dssp ECHHHHHHHHCBCHHHHHHHHHHHHHTTSEEEEE
T ss_pred ecHHHHHHHhcchHHHHHHHHHHHHHCCCEEEEe
Confidence 7899999999999999999999999999998753
No 421
>1yse_A DNA-binding protein SATB1; all helical, DNA-binding domain, T-cell development; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=79.21 E-value=0.31 Score=32.73 Aligned_cols=28 Identities=29% Similarity=0.535 Sum_probs=23.9
Q ss_pred cCCCChhhhHH-HhhcchhhHHHHHhhhh
Q psy1904 3 AAGVRPCVISR-QLRVSHGCVSKILNRYQ 30 (163)
Q Consensus 3 ~~g~~~~~ia~-~~~vs~~~vs~~l~~~~ 30 (163)
..++++.-.|+ +|+.|+|+++.+|+..+
T Consensus 36 ~~~IsQ~~FA~~VL~rsQGtLS~LLr~Pk 64 (141)
T 1yse_A 36 RAGISQAVFARVAFNRTQGLLSEILRKEE 64 (141)
T ss_dssp HHTCCHHHHHHHHCCSCTTHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHhhhhhHHHHHcCCC
Confidence 35788888898 89999999999997754
No 422
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=78.89 E-value=1.2 Score=32.24 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=21.3
Q ss_pred ChhhhHHHhhcchhhHHHHHhhhh
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRYQ 30 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~~ 30 (163)
+-...|++|+||+++||+-+++.+
T Consensus 17 s~s~AA~~L~isq~avS~~i~~LE 40 (294)
T 1ixc_A 17 NMAAAAKRLHVSQPPITRQMQALE 40 (294)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCcchHHHHHHHHH
Confidence 567789999999999999998883
No 423
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=78.26 E-value=0.93 Score=29.01 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=31.4
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCCCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~ 39 (163)
|.|..||.+|+|+-|...++|+.+..-|.+.+-.
T Consensus 60 ITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~ 93 (108)
T 3u5c_Z 60 VSVSVLVDRLKIGGSLARIALRHLEKEGIIKPIS 93 (108)
T ss_dssp BSHHHHHHTTCCCTTHHHHHHHHHSSSSSCEEEE
T ss_pred EeHHHhhhhhhhhHHHHHHHHHHHHHCCCEEEEe
Confidence 6899999999999999999999999999998754
No 424
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=78.18 E-value=1.5 Score=29.17 Aligned_cols=36 Identities=14% Similarity=0.054 Sum_probs=30.6
Q ss_pred CCChhhhHHHh-----hcchhhHHHHHhhhhhccCCCCCCC
Q psy1904 5 GVRPCVISRQL-----RVSHGCVSKILNRYQETGSIRPGVI 40 (163)
Q Consensus 5 g~~~~~ia~~~-----~vs~~~vs~~l~~~~~tG~~~Pg~~ 40 (163)
.+++.||...| +||.+||++.|+.+.+.|-+.--..
T Consensus 29 h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 69 (139)
T 3mwm_A 29 FRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRT 69 (139)
T ss_dssp CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 47889999988 5999999999999999998865433
No 425
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=78.16 E-value=0.43 Score=35.62 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred ccCCCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 2 AAAGVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 2 ~~~g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
++.|.+-...|++|+||+++||+-+++.
T Consensus 13 ~~~gls~s~AA~~L~isq~avS~~I~~L 40 (324)
T 1al3_A 13 VNHNLNVSSTAEGLYTSQPGISKQVRML 40 (324)
T ss_dssp ----------------------------
T ss_pred HHcccCHHHHHHHhCCCchHHHHHHHHH
Confidence 4455678889999999999999999776
No 426
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=78.09 E-value=1.2 Score=30.14 Aligned_cols=23 Identities=17% Similarity=0.080 Sum_probs=20.1
Q ss_pred CChhhhHHHhhcchhhHHHHHhh
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNR 28 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~ 28 (163)
.+..|+|+.||||.++|+++++.
T Consensus 32 LTv~EVAe~LgVs~srV~~LIr~ 54 (148)
T 2kfs_A 32 YDLPRVAELLGVPVSKVAQQLRE 54 (148)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHT
T ss_pred EcHHHHHHHhCCCHHHHHHHHHC
Confidence 45679999999999999999854
No 427
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=78.07 E-value=2 Score=26.49 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=23.1
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
.++..+||+.+|||..+++++++..
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5889999999999999999999776
No 428
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=78.06 E-value=1.3 Score=32.19 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=28.1
Q ss_pred ChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
+-.++|+.||||..||.+-|..+...|-+.-
T Consensus 36 se~~La~~~~vSr~tvr~Al~~L~~~G~i~~ 66 (243)
T 2wv0_A 36 SEREYAEQFGISRMTVRQALSNLVNEGLLYR 66 (243)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 5689999999999999999999999998854
No 429
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=77.98 E-value=1.5 Score=31.22 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=31.2
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGS 43 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~Gg~ 43 (163)
++-.++|+.||||.++|..-|.+....|=+.-.+..|.
T Consensus 36 L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~G~ 73 (218)
T 3sxy_A 36 LNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRVGF 73 (218)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTTEE
T ss_pred eCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCce
Confidence 56789999999999999999999999998854433343
No 430
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=77.69 E-value=1.4 Score=29.83 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=20.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
+|++..|||+..|||.+|++..-
T Consensus 22 ~~~s~~~IA~~agvsk~t~Y~~F 44 (190)
T 3vpr_A 22 EATSVQDLAQALGLSKAALYHHF 44 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHc
Confidence 56899999999999999999864
No 431
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=77.45 E-value=1.5 Score=29.93 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||++.|||.+|+++.-
T Consensus 31 ~~~t~~~IA~~agvsk~tlY~~F 53 (192)
T 2fq4_A 31 KAVTVDKIAERAKVSKATIYKWW 53 (192)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHC
T ss_pred ccccHHHHHHHcCCCHHHHHHHC
Confidence 56899999999999999999864
No 432
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=77.44 E-value=0.83 Score=29.23 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=31.1
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCCCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~ 39 (163)
|.|..||.+|+|+-|...++|+.+.+-|.+.+-.
T Consensus 61 ITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~ 94 (108)
T 3iz6_V 61 ITPSVLSERLRINGSLARQAIKDLESRGAIRVVS 94 (108)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHHHHHHTSCEEC
T ss_pred EeHHHHHhhhcccHHHHHHHHHHHHHCCCEEEEe
Confidence 5689999999999999999999999999998764
No 433
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=76.84 E-value=1.5 Score=32.11 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.0
Q ss_pred ChhhhHHHhhcchhhHHHHHhhh
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
+-...|+.|+||+++||+-+++.
T Consensus 26 s~s~AA~~L~isq~avS~~I~~L 48 (310)
T 2esn_A 26 NVGTAASELAISASAFSHALGRL 48 (310)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHhCCChHHHHHHHHHH
Confidence 55678999999999999999665
No 434
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=76.46 E-value=2 Score=26.59 Aligned_cols=27 Identities=11% Similarity=0.038 Sum_probs=23.3
Q ss_pred CCCChhhhHHHh-hcchhhHHHHHhhhh
Q psy1904 4 AGVRPCVISRQL-RVSHGCVSKILNRYQ 30 (163)
Q Consensus 4 ~g~~~~~ia~~~-~vs~~~vs~~l~~~~ 30 (163)
-|.+-.+|++.| |..|+||..-.++..
T Consensus 45 t~~Sl~~IG~~fggrdHsTV~ha~~ki~ 72 (94)
T 1j1v_A 45 TNHSLPEIGDAFGGRDHTTVLHACRKIE 72 (94)
T ss_dssp SCCCHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 378889999999 899999999887763
No 435
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=76.41 E-value=1.9 Score=31.23 Aligned_cols=38 Identities=18% Similarity=0.133 Sum_probs=31.4
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCCCCCCCCC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGS 43 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~~Gg~ 43 (163)
++..++|+.||||.++|..-|.+....|=+.-.+..|.
T Consensus 52 L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~G~ 89 (239)
T 2hs5_A 52 LSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGV 89 (239)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEE
T ss_pred eCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCee
Confidence 56789999999999999999999999998854443333
No 436
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=76.33 E-value=1.6 Score=30.08 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.9
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
+|++..+||+..|||.+++++.-
T Consensus 27 ~~~s~~~IA~~aGvs~~tiY~~F 49 (202)
T 2d6y_A 27 AGARIDRIAAEARANKQLIYAYY 49 (202)
T ss_dssp TSCCHHHHHHHHTCCHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHc
Confidence 56899999999999999999875
No 437
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=76.05 E-value=1.6 Score=31.74 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=23.0
Q ss_pred ChhhhHHHhhcchhhHHHHHhhh-hhccC
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRY-QETGS 34 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~-~~tG~ 34 (163)
+-...|+.|+||+++||+-+++. .+.|.
T Consensus 19 s~t~AA~~L~isq~avS~~i~~LE~~lg~ 47 (306)
T 3hhg_A 19 SFSRAAEQLAMANSAVSRIVKRLEEKLGV 47 (306)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 56788999999999999999888 33443
No 438
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=75.93 E-value=1.7 Score=31.27 Aligned_cols=28 Identities=4% Similarity=0.067 Sum_probs=22.4
Q ss_pred ChhhhHHHhhcchhhHHHHHhhh-hhccC
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRY-QETGS 34 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~-~~tG~ 34 (163)
+-...|+.|+||+++||+-+++. .+.|.
T Consensus 17 s~t~AA~~L~isq~avS~~i~~LE~~lg~ 45 (291)
T 3szp_A 17 SYTSTSKKTMIPVATITRRIQALEDSLNL 45 (291)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 45678999999999999999887 33443
No 439
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=75.86 E-value=1.7 Score=30.08 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=20.7
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
+|++..+||+..|||.++++..-
T Consensus 30 ~~~s~~~IA~~aGvskgtlY~~F 52 (210)
T 2wui_A 30 GTTAMADLADAAGVSRGAVYGHY 52 (210)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHC
T ss_pred cccCHHHHHHHhCCCHHHHHHHc
Confidence 56899999999999999999864
No 440
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=75.83 E-value=1.7 Score=29.11 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=20.7
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.++++..-
T Consensus 21 ~~~s~~~Ia~~agvskgtlY~~F 43 (179)
T 2eh3_A 21 QGTSVEEIVKRANLSKGAFYFHF 43 (179)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCCcHHHHHHc
Confidence 56899999999999999999864
No 441
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=75.79 E-value=6.1 Score=28.51 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=39.0
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccCCCCCC-C-CCCCCCcCChHHHHHHHHHHH--hCCCCCchhhhhhhhh
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV-I-GGSKPRVATPDVEKRIEEYKK--TNPNITSWEVRDKLIK 77 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~-~-Gg~~p~~~~~~~~~~i~~~~~--~~p~~~~~e~~~~l~~ 77 (163)
+++.++|+.+|||..|+.-|. +.|-+.|.. . +|.+ .=+......+..+.. ...+++..+++.-+..
T Consensus 1 ~~IgevA~~~Gvs~~TLRyYE----~~GLl~p~~R~~~gyR--~Y~~~dl~~L~~I~~lr~~~G~sL~eIk~~l~~ 70 (222)
T 2dg6_A 1 MRLADLSKRSGVSTATIKYYL----REGLLPPGRQVNATTA--EYDEDHLRRLRLVRALIQVGKVPVATAREVLGH 70 (222)
T ss_dssp CCHHHHHHHHTCCHHHHHHHH----HHTSSCCC-----------CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHH----HCCCCCCCeeCCCCce--eeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 578899999999999998875 448888743 2 3333 234444444433322 2235777777665543
No 442
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=75.69 E-value=0.36 Score=32.93 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=28.7
Q ss_pred CCChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 5 g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
.++..+||+.||||.++|.+-|++..+.|-+.
T Consensus 27 ~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~ 58 (163)
T 2gqq_A 27 RISNVELSKRVGLSPTPCLERVRRLERQGFIQ 58 (163)
T ss_dssp SCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 37889999999999999999999998888765
No 443
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=75.67 E-value=1.4 Score=29.18 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=20.7
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.+++++.-
T Consensus 23 ~~~t~~~Ia~~agvs~~t~Y~~F 45 (170)
T 3egq_A 23 HEVSIEEIAREAKVSKSLIFYHF 45 (170)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHC
T ss_pred ccCcHHHHHHHhCCCchhHHHHc
Confidence 35899999999999999999974
No 444
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=75.59 E-value=2.6 Score=26.25 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=23.3
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
..++..+||+.+|||..+++++.++.
T Consensus 17 ~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 17 RPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34889999999999999999999876
No 445
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=75.58 E-value=1.5 Score=28.30 Aligned_cols=48 Identities=8% Similarity=0.198 Sum_probs=36.1
Q ss_pred ccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCccccccccccccc
Q psy1904 101 SRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAG 151 (163)
Q Consensus 101 ~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqnrR~ 151 (163)
.|..||.++...+-..+..+.... ..++|..+|++...|..|..++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 567899999877777764444443 236899999999999999877543
No 446
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=75.21 E-value=1.7 Score=29.43 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=20.6
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||++.|||.+++++.-
T Consensus 26 ~~~t~~~IA~~agvs~~tlY~~F 48 (192)
T 2zcm_A 26 DGTTLDDISKSVNIKKASLYYHY 48 (192)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHT
T ss_pred ccCCHHHHHHHhCCChHHHHHHC
Confidence 56899999999999999999864
No 447
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=75.21 E-value=1.8 Score=29.83 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=20.6
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
+|++..+||+..|||.++++..-
T Consensus 29 ~~~s~~~IA~~aGvs~~t~Y~~F 51 (210)
T 3vib_A 29 ARTSLNEIAQAAGVTRDALYWHF 51 (210)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHC
T ss_pred ccCCHHHHHHHHCcCHHHHHHHC
Confidence 56899999999999999999853
No 448
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=75.17 E-value=1.8 Score=29.09 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=20.9
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.++++..-
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F 53 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRYY 53 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHC
T ss_pred CCCCHHHHHHHhCCCHHHHHHHc
Confidence 57899999999999999999874
No 449
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=75.13 E-value=2.7 Score=26.20 Aligned_cols=26 Identities=4% Similarity=0.239 Sum_probs=23.4
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
..++..+||+.+|||..+++++.+..
T Consensus 20 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 20 EGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35889999999999999999999776
No 450
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=75.11 E-value=1.7 Score=31.83 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=21.6
Q ss_pred ChhhhHHHhhcchhhHHHHHhhhhh
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRYQE 31 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~~~ 31 (163)
+-...|++|+||+++||+-+++.++
T Consensus 18 s~t~AA~~L~isq~avS~~i~~LE~ 42 (305)
T 3fxq_A 18 SLRAAAQLLHLSQPALSAAIQQLED 42 (305)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5567899999999999999998833
No 451
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=74.81 E-value=1.9 Score=31.20 Aligned_cols=33 Identities=9% Similarity=0.112 Sum_probs=29.1
Q ss_pred ChhhhHHHhhcchhhHHHHHhhhhhccCCCCCC
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg~ 39 (163)
+-.++|+.||||..||.+-|..+.+.|-+.-..
T Consensus 35 se~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 67 (236)
T 3edp_A 35 NETALQEIYSSSRTTIRRAVDLLVEEGLVVRKN 67 (236)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC
Confidence 567999999999999999999999999885443
No 452
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=74.79 E-value=1.6 Score=28.39 Aligned_cols=33 Identities=9% Similarity=-0.059 Sum_probs=29.7
Q ss_pred ccCCCChhhhHHHhhcchhhHHHHHhhhhhccC
Q psy1904 2 AAAGVRPCVISRQLRVSHGCVSKILNRYQETGS 34 (163)
Q Consensus 2 ~~~g~~~~~ia~~~~vs~~~vs~~l~~~~~tG~ 34 (163)
.++|+++.+||..-|++.+||..-|..+...|.
T Consensus 29 ~~~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~ 61 (122)
T 3iuo_A 29 IDRKVALDDIAVSHGLDFPELLSEVETIVYSGT 61 (122)
T ss_dssp HHTTCCHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred HHcCCCHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999988877774
No 453
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=74.71 E-value=1.8 Score=29.38 Aligned_cols=23 Identities=13% Similarity=-0.019 Sum_probs=20.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.+|+++.-
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F 53 (202)
T 3lwj_A 31 YNTSIRDIIALSEVGTGTFYNYF 53 (202)
T ss_dssp TTCCHHHHHHHHCSCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCCchhHHHHc
Confidence 56899999999999999999864
No 454
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=74.66 E-value=1.9 Score=29.53 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=20.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.+++++.-
T Consensus 33 ~~~ti~~Ia~~agvs~~t~Y~~F 55 (220)
T 3lhq_A 33 SATSLAEIANAAGVTRGAIYWHF 55 (220)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCCceeehhhc
Confidence 56899999999999999999874
No 455
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=74.60 E-value=2 Score=31.42 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=28.3
Q ss_pred ChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
+-.++|+.||||..||.+-|..+.+.|-+.-
T Consensus 38 se~~La~~~~vSr~tvr~Al~~L~~~G~i~~ 68 (248)
T 3f8m_A 38 AEREIAEQFEVARETVRQALRELLIDGRVER 68 (248)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 5689999999999999999999999998865
No 456
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=74.40 E-value=2 Score=28.70 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=20.4
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.+++++.-
T Consensus 27 ~~~ti~~Ia~~agvs~~t~Y~~F 49 (188)
T 3qkx_A 27 NQLSMLKLAKEANVAAGTIYLYF 49 (188)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHS
T ss_pred ccCCHHHHHHHhCCCcchHHHHc
Confidence 46899999999999999999753
No 457
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=74.36 E-value=1.8 Score=31.17 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=27.4
Q ss_pred hhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 8 PCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 8 ~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
-.++|+.||||.++|..-|++....|-+.-
T Consensus 31 E~~La~~lgVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 31 ERALSETLGVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTSEEC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 468999999999999999999999998865
No 458
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=74.34 E-value=2 Score=32.85 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=27.6
Q ss_pred CChhhhHHHhhcchhhHHHHHhhhhhccC
Q psy1904 6 VRPCVISRQLRVSHGCVSKILNRYQETGS 34 (163)
Q Consensus 6 ~~~~~ia~~~~vs~~~vs~~l~~~~~tG~ 34 (163)
++-.+||+.||||..+|.|-++..++.|-
T Consensus 20 ~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~ 48 (323)
T 3rkx_A 20 ISGQSIAESLNISRTAVKKVIDQLKLEGC 48 (323)
T ss_dssp BCHHHHHHHHTSCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 88899999999999999999999999886
No 459
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=74.09 E-value=1.6 Score=29.22 Aligned_cols=23 Identities=4% Similarity=0.039 Sum_probs=20.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
+|++..+||+..|||.+++++.-
T Consensus 29 ~~~t~~~IA~~agvs~~t~Y~~F 51 (191)
T 3on4_A 29 NAFSFKDIATAINIKTASIHYHF 51 (191)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCCcchhhhcC
Confidence 46899999999999999999874
No 460
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=73.98 E-value=4.9 Score=23.50 Aligned_cols=26 Identities=8% Similarity=0.135 Sum_probs=22.7
Q ss_pred CC-CChhhhHHHhhcchhhHHHHHhhh
Q psy1904 4 AG-VRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 4 ~g-~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
.| |++..+|+.|||-++|+..-++..
T Consensus 28 ~g~mS~~~Aak~yGVP~sTL~~RVk~~ 54 (70)
T 2cob_A 28 SGKMSVSKAQSIYGIPHSTLEYKVKER 54 (70)
T ss_dssp TTSSCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCccHHHHHHHhCCChHHHHHHHHhh
Confidence 67 999999999999999998766554
No 461
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=73.98 E-value=2.2 Score=30.54 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=28.4
Q ss_pred ChhhhHHHhhcchhhHHHHHhhhhhccCCCCC
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~Pg 38 (163)
+-.++|+.||||..+|..-|......|-+.-.
T Consensus 33 sE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~ 64 (239)
T 1hw1_A 33 AERELSELIGVTRTTLREVLQRLARDGWLTIQ 64 (239)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe
Confidence 56899999999999999999999999988543
No 462
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=73.97 E-value=2.1 Score=31.04 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=27.2
Q ss_pred ChhhhHHHhhcchhhHHHHHhhhhhccCCC
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~ 36 (163)
+-.++|+.||||..||.+-|..+...|-+.
T Consensus 31 se~~La~~~~vSr~tvr~Al~~L~~~g~i~ 60 (239)
T 3bwg_A 31 VLETLMAQFEVSKSTITKSLELLEQKGAIF 60 (239)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 567999999999999999999998888874
No 463
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=73.96 E-value=3 Score=26.21 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=23.4
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
..++..+||+.+|||..++++++++.
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 22 EPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34889999999999999999999876
No 464
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=73.87 E-value=1.9 Score=26.04 Aligned_cols=45 Identities=11% Similarity=0.249 Sum_probs=31.7
Q ss_pred ccccCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHhCCCcccccccccc
Q psy1904 99 RRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLG 148 (163)
Q Consensus 99 rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~v~~WFqn 148 (163)
++.+..|+.++....-..+... . ...++|..+|++...|..|...
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 3456678888865555555422 2 2458899999999999999743
No 465
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=73.87 E-value=1.8 Score=32.14 Aligned_cols=31 Identities=13% Similarity=0.090 Sum_probs=28.1
Q ss_pred ChhhhHHHhhcchhhHHHHHhhhhhccCCCC
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~~~tG~~~P 37 (163)
+-.++|+.||||..||.+-|..+.+.|-+.-
T Consensus 55 se~~La~~~~vSr~tvr~Al~~L~~~G~i~~ 85 (272)
T 3eet_A 55 SQARIREEYGVSDTVALEARKVLMAEGLVEG 85 (272)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 6789999999999999999999999998843
No 466
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=73.82 E-value=2.1 Score=29.05 Aligned_cols=23 Identities=17% Similarity=0.030 Sum_probs=20.6
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.++++..-
T Consensus 36 ~~~s~~~Ia~~agvs~~t~Y~~F 58 (206)
T 3kz9_A 36 GRGGHADIAEIAQVSVATVFNYF 58 (206)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHC
T ss_pred ccccHHHHHHHhCCCHHHHHHHc
Confidence 46899999999999999999864
No 467
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=73.69 E-value=2.1 Score=29.74 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=20.6
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
+|++..+||++.|||.++|+..-
T Consensus 43 ~~~s~~~IA~~aGvskgtlY~yF 65 (214)
T 2oer_A 43 QRFTTARVAERAGVSIGSLYQYF 65 (214)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHC
T ss_pred ccccHHHHHHHhCCCCchHHHhC
Confidence 46899999999999999999864
No 468
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=73.66 E-value=2.1 Score=29.48 Aligned_cols=23 Identities=17% Similarity=0.083 Sum_probs=20.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.+++++.-
T Consensus 36 ~~~t~~~IA~~agvs~~t~Y~~F 58 (218)
T 3gzi_A 36 AQVSIREIASLAGTDPGLIRYYF 58 (218)
T ss_dssp SCCCHHHHHHHHTSCTHHHHHHH
T ss_pred CcCCHHHHHHHhCCCHHHHHHHc
Confidence 46899999999999999999875
No 469
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=73.54 E-value=2 Score=29.61 Aligned_cols=23 Identities=17% Similarity=0.123 Sum_probs=20.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.++++..-
T Consensus 30 ~~~s~~~IA~~aGvskgtlY~~F 52 (210)
T 2xdn_A 30 ARTTLADIAELAGVTRGAIYWHF 52 (210)
T ss_dssp TTCCHHHHHHHHTCCTTHHHHHC
T ss_pred ccCcHHHHHHHHCCChHHHHHHh
Confidence 56899999999999999999864
No 470
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=73.31 E-value=2.1 Score=29.27 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.7
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.+|++..-
T Consensus 28 ~~~t~~~Ia~~Agvs~gt~Y~yF 50 (204)
T 3anp_C 28 QETTATEIAKAAHVSRGTFFNYY 50 (204)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHC
T ss_pred ccccHHHHHHHcCCchHHHHHHc
Confidence 46899999999999999999864
No 471
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=73.29 E-value=1.6 Score=31.88 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=23.2
Q ss_pred ChhhhHHHhhcchhhHHHHHhhh-hhccCC
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRY-QETGSI 35 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~-~~tG~~ 35 (163)
+-...|++|+||+++||+-+++. .+.|..
T Consensus 22 s~s~AA~~L~isq~avS~~i~~LE~~lg~~ 51 (303)
T 3isp_A 22 SFDAAAERLHVTPSAVSQRIKSLEQQVGQV 51 (303)
T ss_dssp CHHHHHTTTTCCHHHHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHhCCChHHHHHHHHHHHHHhCCe
Confidence 45678999999999999999988 344543
No 472
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=73.24 E-value=1.8 Score=29.36 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=20.5
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.+++++.-
T Consensus 27 ~~~t~~~Ia~~agvs~~t~Y~~F 49 (206)
T 3dew_A 27 YGVSIRELAQAAGASISMISYHF 49 (206)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHS
T ss_pred ccCcHHHHHHHhCCCHHHHHHHc
Confidence 46899999999999999999864
No 473
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=73.24 E-value=3.2 Score=25.79 Aligned_cols=26 Identities=8% Similarity=0.198 Sum_probs=23.4
Q ss_pred CCCChhhhHHHhhcchhhHHHHHhhh
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
..++..+||+.+|||..+++++.+..
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 45889999999999999999999775
No 474
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=73.22 E-value=2.2 Score=29.21 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=20.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.||++..-
T Consensus 29 ~~~s~~~Ia~~Agvskgt~Y~yF 51 (197)
T 2f07_A 29 DKASISDIVKKAGTAQGTFYLYF 51 (197)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCCchHHHHhC
Confidence 56899999999999999999874
No 475
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=73.00 E-value=2.2 Score=29.15 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.+++++.-
T Consensus 33 ~~~ti~~IA~~agvs~~t~Y~~F 55 (212)
T 3knw_A 33 VGVGLQEILKTSGVPKGSFYHYF 55 (212)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCChHHHHHHC
Confidence 56899999999999999999874
No 476
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=72.92 E-value=2.2 Score=28.60 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.5
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.+++++.-
T Consensus 28 ~~~tv~~Ia~~agvs~~t~Y~~F 50 (195)
T 3ppb_A 28 HGTSTATIAREAGVATGTLFHHF 50 (195)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCChhHHHHHc
Confidence 45899999999999999999864
No 477
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=72.62 E-value=2.2 Score=28.74 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=20.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.+++++.-
T Consensus 21 ~~~ti~~Ia~~agvs~~t~Y~~F 43 (194)
T 3bqz_B 21 NATTTGEIVKLSESSKGNLYYHF 43 (194)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHT
T ss_pred ccCCHHHHHHHhCCCchhHHHhC
Confidence 56899999999999999999874
No 478
>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=72.51 E-value=1.2 Score=27.88 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.0
Q ss_pred cCCCChhhhHH-HhhcchhhHHHHHh
Q psy1904 3 AAGVRPCVISR-QLRVSHGCVSKILN 27 (163)
Q Consensus 3 ~~g~~~~~ia~-~~~vs~~~vs~~l~ 27 (163)
..+|++...|+ .|+-|+++++.||+
T Consensus 32 ~~~IsQa~FAk~vlnRsQGtLSelLR 57 (101)
T 2csf_A 32 RAKVSQALFAKVAANKSQGWLCELLR 57 (101)
T ss_dssp HHTCCHHHHHHHHTCCCHHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHhchhHHHHHHh
Confidence 35789999999 88999999999994
No 479
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=72.23 E-value=2.4 Score=29.19 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=21.0
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
+|++..+||+..|||.++++..-
T Consensus 30 ~~ts~~~IA~~aGvsk~tlY~~F 52 (202)
T 2i10_A 30 EGTSITDLTKALGINPPSLYAAF 52 (202)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChHHHHHHh
Confidence 57899999999999999999875
No 480
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=72.22 E-value=1.5 Score=27.39 Aligned_cols=50 Identities=10% Similarity=0.172 Sum_probs=37.3
Q ss_pred CCChhhhHH-HhhcchhhHHHHHhhhhhccCCCCCCCCCCCCCcCChHHHHHHHH
Q psy1904 5 GVRPCVISR-QLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEE 58 (163)
Q Consensus 5 g~~~~~ia~-~~~vs~~~vs~~l~~~~~tG~~~Pg~~Gg~~p~~~~~~~~~~i~~ 58 (163)
.+++.+||+ .+++..++|++=++...+-|=+. . .|.+ -..++.-...+.+
T Consensus 30 ~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe-~-~~~D--l~LT~~G~~~l~~ 80 (95)
T 1bja_A 30 FITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE-K-SGDG--LIITGEAQDIISN 80 (95)
T ss_dssp TBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE-E-ETTE--EEECHHHHHHHHH
T ss_pred CCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee-c-CCCC--eeeCHhHHHHHHH
Confidence 489999999 99999999999999998889887 2 2222 3345555555543
No 481
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=72.18 E-value=2.4 Score=29.15 Aligned_cols=23 Identities=4% Similarity=0.031 Sum_probs=20.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.+++++.-
T Consensus 30 ~~~ti~~Ia~~agvs~~t~Y~~F 52 (216)
T 3f0c_A 30 CKTTMNEIASDVGMGKASLYYYF 52 (216)
T ss_dssp SSCCHHHHHHHHTCCHHHHHHHC
T ss_pred CcCCHHHHHHHhCCCHHHHHHHc
Confidence 56899999999999999999874
No 482
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=71.94 E-value=0.78 Score=33.94 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=0.0
Q ss_pred ChhhhHHHhhcchhhHHHHHhhh
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
+-...|++|+||+++||+-+++.
T Consensus 17 s~s~AA~~L~isq~avS~~I~~L 39 (312)
T 2h9b_A 17 SFTKAADKLCIAQPPLSRQIQNL 39 (312)
T ss_dssp -----------------------
T ss_pred CHHHHHHHhcCCccHHHHHHHHH
Confidence 55678999999999999998776
No 483
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=71.92 E-value=2.3 Score=29.10 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=20.7
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.+++++.-
T Consensus 37 ~~~s~~~Ia~~agvs~~t~Y~~F 59 (212)
T 1pb6_A 37 HGTRLEQIAELAGVSKTNLLYYF 59 (212)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHS
T ss_pred chhhHHHHHHHHCCChhHHHHhC
Confidence 56899999999999999999864
No 484
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=71.91 E-value=2.3 Score=28.80 Aligned_cols=23 Identities=9% Similarity=-0.021 Sum_probs=20.7
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.+++++.-
T Consensus 33 ~~~ti~~Ia~~agvs~~t~Y~~F 55 (203)
T 3f1b_A 33 HETSMDAIAAKAEISKPMLYLYY 55 (203)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHC
T ss_pred ccccHHHHHHHhCCchHHHHHHh
Confidence 56899999999999999999863
No 485
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=71.90 E-value=3.1 Score=27.50 Aligned_cols=23 Identities=13% Similarity=0.145 Sum_probs=21.1
Q ss_pred CCCChhhhHHHhh-----cchhhHHHHH
Q psy1904 4 AGVRPCVISRQLR-----VSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~-----vs~~~vs~~l 26 (163)
.+++..++|+.+| ||.++++.|.
T Consensus 25 ~~~T~~elA~~~~~~G~~is~s~is~~E 52 (135)
T 3r1f_A 25 GPHTSAEVIAALKAEGITMSAPYLSQLR 52 (135)
T ss_dssp CCCCHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHcccCCCcCHHHHHHHH
Confidence 4589999999999 9999999996
No 486
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=71.83 E-value=2 Score=29.72 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.6
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.++++..-
T Consensus 27 ~~~s~~~IA~~AGvs~gt~Y~yF 49 (206)
T 1vi0_A 27 HQSQVSKIAKQAGVADGTIYLYF 49 (206)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCChhHHHHHc
Confidence 46899999999999999999874
No 487
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=71.80 E-value=2.4 Score=28.93 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=20.9
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.+++++.-
T Consensus 35 ~~~t~~~Ia~~agvs~~t~Y~~F 57 (213)
T 2qtq_A 35 VDISLSELSLRSGLNSALVKYYF 57 (213)
T ss_dssp SCCCHHHHHHHHCCCHHHHHHHH
T ss_pred ccccHHHHHHHhCCChhhHhHhc
Confidence 56899999999999999999875
No 488
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=71.71 E-value=1.4 Score=30.13 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=20.5
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
+|++..+||+..|||.++|+..-
T Consensus 37 ~~~s~~~IA~~aGvs~~tlY~~F 59 (212)
T 3loc_A 37 HGTRLEQIAELAGVSKTNLLYYF 59 (212)
T ss_dssp HHCCHHHHHHHHTSCHHHHHHHS
T ss_pred ccCCHHHHHHHHCcCHHHHhhhC
Confidence 45889999999999999999864
No 489
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=71.63 E-value=2 Score=29.16 Aligned_cols=23 Identities=4% Similarity=0.070 Sum_probs=20.6
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.+++++.-
T Consensus 36 ~~~ti~~Ia~~agvs~~t~Y~~F 58 (208)
T 3cwr_A 36 AAMTMEGVASEAGIAKKTLYRFA 58 (208)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHC
T ss_pred HhccHHHHHHHhCCCHHHHHHHc
Confidence 46899999999999999999864
No 490
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=71.55 E-value=2.5 Score=29.15 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=20.9
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.++++..-
T Consensus 31 ~~ts~~~IA~~aGvsk~tlY~~F 53 (211)
T 3bhq_A 31 DGTSMEEIATKAGASKQTVYKHF 53 (211)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHc
Confidence 56899999999999999999865
No 491
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=71.51 E-value=2.4 Score=28.96 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=20.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.++++..-
T Consensus 26 ~~ts~~~IA~~aGvs~gtlY~~F 48 (197)
T 2gen_A 26 DATTIEMIRDRSGASIGSLYHHF 48 (197)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHT
T ss_pred ccCCHHHHHHHHCCChHHHHHHC
Confidence 56899999999999999999864
No 492
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=71.43 E-value=2.5 Score=28.46 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=20.9
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
+|++..+||++.|||.+++++.-
T Consensus 27 ~~~t~~~IA~~Agvs~~tly~~F 49 (194)
T 3dpj_A 27 AQTSFVDISAAVGISRGNFYYHF 49 (194)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHC
T ss_pred ccCCHHHHHHHHCCChHHHHHHc
Confidence 56899999999999999999874
No 493
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=71.38 E-value=2 Score=28.81 Aligned_cols=23 Identities=9% Similarity=0.140 Sum_probs=20.7
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.+++++.-
T Consensus 27 ~~~ti~~Ia~~agvs~~t~Y~~F 49 (194)
T 2g7s_A 27 NSFSYADISQVVGIRNASIHHHF 49 (194)
T ss_dssp GGCCHHHHHHHHCCCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCCchHHHHHc
Confidence 46899999999999999999874
No 494
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=71.35 E-value=2.5 Score=29.41 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=20.5
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
+|++..+||+..|||.++++..-
T Consensus 28 ~~ts~~~IA~~AGvskgtlY~~F 50 (215)
T 1ui5_A 28 ESTTLSEIVAHAGVTKGALYFHF 50 (215)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCCchhhHhhC
Confidence 56899999999999999999753
No 495
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=71.27 E-value=2.4 Score=28.91 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=20.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.++++..-
T Consensus 31 ~~~s~~~IA~~aGvs~~tlY~~F 53 (197)
T 2hyt_A 31 ADTSMDDLTAQASLTRGALYHHF 53 (197)
T ss_dssp TTCCHHHHHHHHTCCTTHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHc
Confidence 56899999999999999999864
No 496
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=71.24 E-value=1.9 Score=29.26 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=20.1
Q ss_pred CCCChhhhHHHhhcchhhHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKI 25 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~ 25 (163)
++++..+||+..|||.+++++.
T Consensus 30 ~~~s~~~Ia~~agvs~~t~Y~~ 51 (203)
T 3b81_A 30 ENTTLAFIINKLGISKGALYHY 51 (203)
T ss_dssp TTCCHHHHHHHHTCCHHHHHTT
T ss_pred ccCcHHHHHHHhCCCchhHHHH
Confidence 5689999999999999999985
No 497
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=71.14 E-value=2 Score=31.29 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.0
Q ss_pred ChhhhHHHhhcchhhHHHHHhhh
Q psy1904 7 RPCVISRQLRVSHGCVSKILNRY 29 (163)
Q Consensus 7 ~~~~ia~~~~vs~~~vs~~l~~~ 29 (163)
+-...|+.|+||+++||+-+++.
T Consensus 20 s~s~AA~~L~isq~avS~~i~~L 42 (306)
T 3fzv_A 20 SVAEASRKLYIAQPSISTAVKGL 42 (306)
T ss_dssp SHHHHHHHHTCCC-CHHHHHHHH
T ss_pred CHHHHHHHhCCCchHHHHHHHHH
Confidence 56788999999999999999888
No 498
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=71.14 E-value=2.6 Score=28.88 Aligned_cols=23 Identities=4% Similarity=-0.008 Sum_probs=20.7
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.+|+++.-
T Consensus 50 ~~~tv~~Ia~~agvs~~t~Y~~F 72 (218)
T 3dcf_A 50 YATSLDDIADRIGFTKPAIYYYF 72 (218)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHC
T ss_pred ccCcHHHHHHHhCCCHHHHHHHc
Confidence 46899999999999999999864
No 499
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=71.04 E-value=2.4 Score=29.04 Aligned_cols=23 Identities=9% Similarity=0.046 Sum_probs=20.8
Q ss_pred CCCChhhhHHHhhcchhhHHHHH
Q psy1904 4 AGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 4 ~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
++++..+||+..|||.++++..-
T Consensus 33 ~~~s~~~IA~~agvs~~tlY~~F 55 (204)
T 2ibd_A 33 RATTVRDIADAAGILSGSLYHHF 55 (204)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHC
T ss_pred hhcCHHHHHHHhCCCchhHHHhc
Confidence 56899999999999999999864
No 500
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain, transcription; 2.25A {Enterococcus faecalis} SCOP: a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A 2grl_A 2grm_A
Probab=70.88 E-value=2.4 Score=32.09 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=21.2
Q ss_pred cCCCChhhhHHHhhcchhhHHHHH
Q psy1904 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (163)
Q Consensus 3 ~~g~~~~~ia~~~~vs~~~vs~~l 26 (163)
..|+++.++|+.+ ||++++|+|.
T Consensus 14 ~~gltq~~la~~~-is~~~is~~E 36 (317)
T 2awi_A 14 ELNYHQIDLYSGI-MSKSVYIKVE 36 (317)
T ss_dssp HTTCCHHHHHTTT-SCHHHHHHHH
T ss_pred HCCCCHHHHHHHh-cCHHHHHHHH
Confidence 3699999999999 9999999995
Done!