RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1904
(163 letters)
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 123
Score = 87.3 bits (216), Expect = 2e-23
Identities = 66/92 (71%), Positives = 77/92 (83%)
Query: 1 MAAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYK 60
MAA G+RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR+ATP++E RIEEYK
Sbjct: 28 MAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYK 87
Query: 61 KTNPNITSWEVRDKLIKVSRLDDSDTESEPGI 92
+++P + SWE+R+KLI+ D S S I
Sbjct: 88 RSSPGMFSWEIREKLIREGVCDRSTAPSVSAI 119
>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 72.7 bits (179), Expect = 2e-18
Identities = 23/39 (58%), Positives = 32/39 (82%)
Query: 39 VIGGSKPRVATPDVEKRIEEYKKTNPNITSWEVRDKLIK 77
VIGGSKP+VATP V ++I EYK+ NP + +WE+RD+L+
Sbjct: 1 VIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA 39
>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 65
Score = 67.0 bits (164), Expect = 3e-16
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 41 GGSKPRVATPDVEKRIEEYKKTNPNITSWEVRDKLIK 77
GGSKPRVATP+V +I +YK+ P+I +WE+RD+L+
Sbjct: 1 GGSKPRVATPEVVSKIAQYKQECPSIFAWEIRDRLLS 37
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 62.9 bits (153), Expect = 1e-14
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 96 RKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQ 143
R R+ R +T Q ELEK F + Y R +A +TE +V+
Sbjct: 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVK 58
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 61.0 bits (148), Expect = 5e-14
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 99 RRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQ 143
+R+RT+FT Q+E LEK F+R+HYPD++ RE LA K + E R+Q
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQ 46
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 57.9 bits (140), Expect = 8e-13
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 99 RRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQ 143
+ + F++ Q ELEK F+ Y R+ LA ++E +V+
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVK 45
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 63
Score = 57.7 bits (140), Expect = 1e-12
Identities = 31/38 (81%), Positives = 33/38 (86%)
Query: 1 MAAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38
+A GVRPC ISRQLRVSHGCVSKIL RY ETGSI+PG
Sbjct: 26 LAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPG 63
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 57.5 bits (139), Expect = 1e-12
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 97 KQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQ 143
K R RT QL L + + PD +E L G++ ++
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 48
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 57.1 bits (138), Expect = 1e-12
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 102 RTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQ 143
R T+T Q ELEK F + Y R +A+ +TE +++
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 42
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 57.2 bits (138), Expect = 1e-12
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 100 RSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQ 143
R RT F+S QL L++ F + Y R+ L+++ G+ E +++
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIK 44
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 57.2 bits (138), Expect = 1e-12
Identities = 30/47 (63%), Positives = 41/47 (87%)
Query: 97 KQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQ 143
KQRRSRTTF+++QL+ELE++F+R+ YPDIYTRE LA + +TE R+Q
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 47
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 56.4 bits (136), Expect = 2e-12
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 99 RRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQ 143
R+ R ++ QL ELE+ + + + R ++ ++E ++
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQIT 46
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 56.6 bits (136), Expect = 4e-12
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 99 RRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQ 143
R SR T+ L +E F + YPD RE +AN +
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPG 45
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 55.3 bits (133), Expect = 7e-12
Identities = 26/46 (56%), Positives = 34/46 (73%)
Query: 98 QRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQ 143
QRR RT FTS QL++LE +FQR+ YPD+ TRE +A +TE RV+
Sbjct: 1 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVR 46
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 54.5 bits (131), Expect = 1e-11
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 102 RTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQ 143
+++ + LE+ F+R + +E +A K G+T +V+
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVR 42
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 54.1 bits (130), Expect = 2e-11
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 100 RSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQ 143
R RT FT QL LEK F + +Y R LA + + E+ ++
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIK 44
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 54.2 bits (130), Expect = 2e-11
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 94 LKRKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQ 143
L + ++R RT+ + LE F + P + +AN+ G+ + V+
Sbjct: 4 LVQARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVR 53
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 54.2 bits (130), Expect = 2e-11
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 99 RRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQ 143
R+ RT FT+AQL LE+ F++ Y I R ++ +TET+V+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVK 45
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 53.3 bits (128), Expect = 3e-11
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 102 RTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQ 143
R FT Q L F+ + P + ++ + G+ + V
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVS 43
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 54.6 bits (131), Expect = 3e-11
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 96 RKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQ 143
RT FT+ QL ELEK F + Y R +A + ET+V+
Sbjct: 25 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVK 72
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 53.5 bits (128), Expect = 5e-11
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 94 LKRKQRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQ 143
L K+R+ R FT AQ ELE+ F++ Y RE LA+ +T T+V+
Sbjct: 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVK 54
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 53.0 bits (127), Expect = 6e-11
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 100 RSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQ 143
+ RTT + A + LE+ F P +A + + + V+
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVR 44
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 52.6 bits (126), Expect = 8e-11
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 99 RRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQ 143
RR+RTTFTS+Q+ ELE+ F + Y L+ K + +V+
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVK 46
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 53.0 bits (127), Expect = 8e-11
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 98 QRRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQ 143
+R+ R F+ AQ+ ELE+ F++ Y RE LA+ +T T+V+
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVK 47
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 47.7 bits (113), Expect = 9e-09
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 99 RRSRTTFTSAQLEELEKSFQRS-HYPDIYTREALANKFGMTETRVQ 143
T T Q+E LE +F + +PD T +A + G+TE + Q
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 47
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 46.9 bits (111), Expect = 1e-08
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 102 RTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQ 143
RT+ + LEKSF + P +A + M + ++
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIR 43
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 46.7 bits (111), Expect = 1e-08
Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 99 RRSRTTFTSAQLEELEKSFQRSH---YPDIYTREALANKFGMTETRVQ 143
+ R + + YP ++ +A + +T +V
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVN 50
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 46.9 bits (111), Expect = 2e-08
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 99 RRSRTTFTSAQLEELEKSF---QRSHYPDIYTREALANKFGMTETRVQ 143
RR R F E L + F + YP +E LA K G+T ++V
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVS 49
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 47.1 bits (111), Expect = 2e-08
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 102 RTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFVLGTAGFL 153
R + A + L ++++R P RE L + E + A L
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGL 52
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 45.9 bits (109), Expect = 2e-08
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 106 TSAQLEELEKSFQR-SHYPDIYTREALANKFGMTETRVQ 143
T+ LEK F + +PD E L+ + +Q
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQ 39
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 45.5 bits (108), Expect = 4e-08
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 100 RSRTTFTSAQLEELEKSFQR-SHYPDIYTREALANKFGMTETRVQ 143
+ + LEK F + YPD + L+ + + ++Q
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQ 47
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 44.4 bits (105), Expect = 1e-07
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 99 RRSRTTFTSAQLEELEKSF---QRSHYPDIYTREALANKFGMTETRVQ 143
R R FT + LE F + Y D E L ++ +++
Sbjct: 1 RGHR--FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIK 46
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 44.2 bits (104), Expect = 2e-07
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 95 KRKQRRSRTTFTSAQLEELEKSFQR----SHYPDIYTREALANKFGMTETRVQ 143
+R RT FT+ Q E++ +R D E + G+ ++
Sbjct: 14 GGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLK 66
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 43.9 bits (103), Expect = 2e-07
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 97 KQRRSRTTFTSAQLEELEKSFQR-SHYPDIYTREALANKFGMTETRVQ 143
RSRT + L L+ YPD L+ + + + +
Sbjct: 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTII 53
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 37.0 bits (85), Expect = 9e-05
Identities = 9/45 (20%), Positives = 15/45 (33%)
Query: 99 RRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQ 143
+ T+ QL L+ SF S L + +T +
Sbjct: 5 PQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREID 49
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 34.3 bits (78), Expect = 9e-04
Identities = 9/48 (18%), Positives = 16/48 (33%)
Query: 99 RRSRTTFTSAQLEELEKSFQRSHYPDIYTREALANKFGMTETRVQQFV 146
S T QL L+ F + + + L G+ + Q+
Sbjct: 4 GSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWF 51
>d1m7ka_ a.7.7.1 (A:) Silencer of death domains, Sodd (Bag4) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 27.4 bits (61), Expect = 0.25
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 50 PDVEKRIEEYKKTNPNITSWEVRDKLIKV-SRLDDSDTESEPGIVLKRKQRRSRTTFTSA 108
+E+ +EE+ + W + + L K LD +T + + R+ R+ A
Sbjct: 16 QYLEQEVEEFVGKKTDKAYWLLEEMLTKELLELDSVETGGQDSV---RQARKEAVCKIQA 72
Query: 109 QLEELEK 115
LE+LEK
Sbjct: 73 ILEKLEK 79
>d1ugoa_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-5,
BAG-5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 26.7 bits (59), Expect = 0.75
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 51 DVEKRIEEYKKTNPNITSWEVRDKLIKV-SRLDDSDTESEPGIVLKRKQRRSRTTFTSAQ 109
+E ++ + + + + L K +D DTE + I ++ R+ T
Sbjct: 29 AIEPQVVGFSGLSDDKNYKRLERILTKQLFEIDSVDTEGKGDI---QQARKRAAQETERL 85
Query: 110 LEELEK 115
L+ELE+
Sbjct: 86 LKELEQ 91
>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId:
1421]}
Length = 309
Score = 27.5 bits (59), Expect = 0.85
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 48 ATPDVEKRIEEYKKTNPNITSWEVRDKLIKVSRLDDSDTESEPGIV 93
ATP V + NP++++ ++R L + ++ D I
Sbjct: 252 ATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIG 297
>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit
{Rattus norvegicus [TaxId: 10116]}
Length = 328
Score = 26.7 bits (58), Expect = 1.5
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 43 SKPRVATPDVEKRIEEYKKTNPNITSWEVRDKLIKVSRL 81
S+ RV T R EY ++ W +D V +L
Sbjct: 5 SRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKL 43
>d1u1ha2 c.1.22.2 (A:396-760)
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase MetE {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 365
Score = 26.6 bits (58), Expect = 1.6
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 35 IRPGVIGGSKPRVATPD-VEKRIEEYKK 61
I PGV PR+ + + + R+ +
Sbjct: 298 IGPGVYDIHSPRIPSSEEIADRVNKMLA 325
>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 24.8 bits (54), Expect = 3.8
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 44 KPRVATPDVEKRIEEYKKTNPNITSWEVRDKLIKVSRLDDSDTESEPGIVLKRKQRRSRT 103
+ V + + +K ++Y +T +L+ LD D E + R+ RR
Sbjct: 43 EQAVDSFEGKKTDKKYLMIEEYLTK-----ELLA---LDSVDPEGRADV---RQARRDGV 91
Query: 104 TFTSAQLEELEK 115
LE+LE+
Sbjct: 92 RKVQTILEKLEQ 103
>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase
{Thermus thermophilus [TaxId: 274]}
Length = 421
Score = 25.2 bits (54), Expect = 5.3
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 103 TTFTSAQLEELEKSFQRSHYPDIYTR 128
T++ E F + +IY+R
Sbjct: 29 TSYVFKSPEHAANLFALKEFGNIYSR 54
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 23.4 bits (50), Expect = 9.0
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 24 KILNRYQETGSIRPGVIGGSKPRVATPDVEKRIEEYKKTNPNITSW 69
+IL+ YQ+ G P + +V ++ K ++ S
Sbjct: 36 EILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSE 81
>d1v8da_ c.140.1.1 (A:) Hypothetical protein TT1679 {Thermus
thermophilus [TaxId: 274]}
Length = 193
Score = 23.9 bits (52), Expect = 9.5
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 36 RPGVIGGSKPRVATPDVEKRIEEY 59
RP ++GG++ ++ K++EE+
Sbjct: 168 RPKLVGGARAVYTREEMLKKLEEF 191
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.376
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 587,520
Number of extensions: 25779
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 49
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.8 bits)