Query psy1907
Match_columns 1320
No_of_seqs 821 out of 3598
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 19:19:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0923|consensus 100.0 5E-182 1E-186 1563.4 46.8 692 447-1145 41-901 (902)
2 KOG0924|consensus 100.0 2E-134 4E-139 1166.8 34.3 470 659-1131 345-977 (1042)
3 KOG0922|consensus 100.0 1E-133 2E-138 1182.8 38.0 471 656-1130 37-670 (674)
4 KOG0925|consensus 100.0 2E-127 4E-132 1079.4 30.1 476 655-1133 32-673 (699)
5 PRK11131 ATP-dependent RNA hel 100.0 2E-108 5E-113 1052.6 41.7 491 663-1318 67-721 (1294)
6 TIGR01967 DEAH_box_HrpA ATP-de 100.0 8E-102 2E-106 996.5 41.9 492 662-1318 59-711 (1283)
7 KOG0926|consensus 100.0 3E-101 7E-106 903.1 40.5 472 657-1129 243-1025(1172)
8 COG1643 HrpA HrpA-like helicas 100.0 1.1E-97 2E-102 927.0 37.1 466 656-1123 36-707 (845)
9 KOG0920|consensus 100.0 9E-92 2E-96 868.3 32.9 514 656-1206 159-893 (924)
10 KOG0923|consensus 100.0 4.9E-79 1.1E-83 707.3 22.4 346 1-387 361-720 (902)
11 KOG0922|consensus 100.0 2.7E-75 5.9E-80 687.9 24.2 343 1-385 146-502 (674)
12 PRK11131 ATP-dependent RNA hel 100.0 1.5E-72 3.2E-77 723.0 38.4 319 1-355 169-511 (1294)
13 TIGR01970 DEAH_box_HrpB ATP-de 100.0 3.2E-72 6.9E-77 710.5 36.1 426 669-1137 1-587 (819)
14 PRK11664 ATP-dependent RNA hel 100.0 1.9E-71 4.1E-76 705.2 36.4 410 668-1130 3-574 (812)
15 KOG0924|consensus 100.0 2.5E-69 5.4E-74 625.8 18.0 341 1-382 451-806 (1042)
16 TIGR01967 DEAH_box_HrpA ATP-de 100.0 4.1E-67 8.9E-72 675.5 34.1 319 1-355 162-502 (1283)
17 KOG0925|consensus 100.0 6.6E-68 1.4E-72 597.5 21.2 330 1-362 142-494 (699)
18 COG1643 HrpA HrpA-like helicas 100.0 3.7E-64 8.1E-69 627.0 23.6 337 1-383 145-497 (845)
19 KOG0926|consensus 100.0 6.8E-56 1.5E-60 521.5 17.6 329 1-356 355-801 (1172)
20 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1E-54 2.2E-59 551.1 25.0 337 1-385 96-447 (819)
21 PRK11664 ATP-dependent RNA hel 100.0 2.9E-53 6.4E-58 539.2 26.4 330 1-363 99-444 (812)
22 KOG0920|consensus 100.0 1.1E-53 2.3E-58 530.0 17.1 347 1-388 270-661 (924)
23 KOG0921|consensus 100.0 1.1E-49 2.4E-54 473.3 17.8 459 659-1121 367-1067(1282)
24 PHA02653 RNA helicase NPH-II; 100.0 7.7E-39 1.7E-43 398.2 18.3 241 675-943 169-596 (675)
25 PHA02653 RNA helicase NPH-II; 100.0 8.5E-39 1.8E-43 397.8 17.8 274 12-335 285-570 (675)
26 KOG0345|consensus 100.0 6.4E-37 1.4E-41 347.7 15.5 327 1-478 137-495 (567)
27 KOG0331|consensus 100.0 3.4E-30 7.4E-35 305.6 19.1 221 2-254 222-452 (519)
28 KOG0330|consensus 100.0 6.3E-29 1.4E-33 277.4 12.7 217 1-252 185-409 (476)
29 KOG0921|consensus 100.0 2.2E-29 4.8E-34 301.0 8.7 355 1-390 478-892 (1282)
30 COG0513 SrmB Superfamily II DN 100.0 4E-28 8.6E-33 298.3 18.5 220 2-255 157-386 (513)
31 PRK11776 ATP-dependent RNA hel 99.9 2.4E-26 5.3E-31 280.8 19.8 219 1-254 129-353 (460)
32 PTZ00110 helicase; Provisional 99.9 5.7E-26 1.2E-30 281.7 19.7 220 1-253 259-487 (545)
33 KOG0343|consensus 99.9 3.8E-26 8.2E-31 263.4 15.2 218 1-251 196-423 (758)
34 KOG0328|consensus 99.9 9E-26 1.9E-30 242.6 15.8 220 2-256 152-379 (400)
35 KOG0342|consensus 99.9 7.8E-26 1.7E-30 259.8 15.4 218 2-253 212-440 (543)
36 KOG0333|consensus 99.9 8.6E-26 1.9E-30 259.7 15.1 215 2-251 379-625 (673)
37 KOG0336|consensus 99.9 6.4E-26 1.4E-30 253.2 13.4 219 1-254 349-576 (629)
38 PRK01172 ski2-like helicase; P 99.9 1E-25 2.2E-30 287.3 16.0 319 1-348 117-488 (674)
39 PRK11634 ATP-dependent RNA hel 99.9 7.5E-25 1.6E-29 274.4 21.3 219 1-254 131-356 (629)
40 PRK11192 ATP-dependent RNA hel 99.9 7.9E-25 1.7E-29 265.7 20.6 221 1-255 129-357 (434)
41 PRK10590 ATP-dependent RNA hel 99.9 5.7E-25 1.2E-29 268.3 19.1 220 1-255 131-357 (456)
42 PRK04837 ATP-dependent RNA hel 99.9 5.8E-25 1.3E-29 265.9 18.2 220 1-255 139-367 (423)
43 PLN00206 DEAD-box ATP-dependen 99.9 8.3E-25 1.8E-29 270.3 19.8 220 1-253 252-478 (518)
44 KOG0340|consensus 99.9 1.2E-24 2.6E-29 241.0 14.6 221 1-255 131-366 (442)
45 PRK04537 ATP-dependent RNA hel 99.9 3.1E-24 6.6E-29 267.3 18.7 220 1-255 140-369 (572)
46 PRK02362 ski2-like helicase; P 99.9 3.2E-24 7E-29 275.6 19.2 343 1-371 119-535 (737)
47 KOG0338|consensus 99.9 9.4E-25 2E-29 250.1 10.8 218 2-252 309-535 (691)
48 PRK01297 ATP-dependent RNA hel 99.9 8.1E-24 1.7E-28 259.6 18.7 217 1-252 219-444 (475)
49 KOG0339|consensus 99.9 5.5E-24 1.2E-28 243.3 15.5 219 1-253 352-578 (731)
50 PTZ00424 helicase 45; Provisio 99.9 7.6E-24 1.7E-28 254.3 17.4 221 1-255 152-379 (401)
51 TIGR03817 DECH_helic helicase/ 99.9 2.8E-23 6.1E-28 264.9 19.9 224 1-250 135-386 (742)
52 KOG0335|consensus 99.9 8.8E-24 1.9E-28 247.3 13.3 218 1-249 208-443 (482)
53 KOG0326|consensus 99.9 1.1E-23 2.4E-28 229.8 12.9 216 2-252 210-431 (459)
54 PRK00254 ski2-like helicase; P 99.9 1.2E-22 2.5E-27 260.7 17.4 234 1-249 120-387 (720)
55 KOG0348|consensus 99.9 1.1E-22 2.4E-27 234.4 14.8 245 2-267 269-573 (708)
56 PF07717 OB_NTP_bind: Oligonuc 99.9 3.8E-23 8.1E-28 205.0 8.5 101 1192-1292 1-114 (114)
57 KOG0332|consensus 99.9 1.5E-22 3.2E-27 225.5 12.8 220 2-250 214-443 (477)
58 KOG0341|consensus 99.9 7.6E-23 1.7E-27 227.4 7.9 215 2-251 309-529 (610)
59 PRK11057 ATP-dependent DNA hel 99.9 2.4E-21 5.2E-26 243.6 19.7 220 1-255 121-348 (607)
60 TIGR00614 recQ_fam ATP-depende 99.9 5.8E-21 1.3E-25 233.9 22.1 221 1-255 107-338 (470)
61 PLN03137 ATP-dependent DNA hel 99.9 3.7E-21 8.1E-26 244.3 19.3 220 1-255 558-792 (1195)
62 KOG0347|consensus 99.9 1.4E-22 3E-27 234.3 3.4 209 2-254 320-574 (731)
63 PRK09751 putative ATP-dependen 99.8 2E-20 4.3E-25 246.9 21.9 220 1-242 105-379 (1490)
64 PRK13767 ATP-dependent helicas 99.8 2.9E-20 6.4E-25 241.7 20.1 224 1-248 152-398 (876)
65 TIGR01389 recQ ATP-dependent D 99.8 4.1E-20 8.8E-25 232.7 17.7 220 1-255 109-336 (591)
66 KOG0334|consensus 99.8 6.4E-20 1.4E-24 227.8 12.7 218 1-252 494-722 (997)
67 KOG0327|consensus 99.8 2.1E-19 4.5E-24 202.8 15.4 218 2-256 152-376 (397)
68 TIGR01587 cas3_core CRISPR-ass 99.8 4.1E-19 9E-24 210.3 17.0 216 1-250 100-336 (358)
69 KOG4284|consensus 99.8 3.4E-19 7.3E-24 208.8 14.9 217 2-249 150-378 (980)
70 KOG0350|consensus 99.8 1.3E-19 2.8E-24 208.5 10.1 223 2-255 277-545 (620)
71 PRK10689 transcription-repair 99.8 7.2E-19 1.6E-23 231.4 18.5 204 2-248 710-917 (1147)
72 TIGR02621 cas3_GSU0051 CRISPR- 99.8 1.9E-18 4.1E-23 217.4 20.4 185 16-236 169-379 (844)
73 TIGR00580 mfd transcription-re 99.8 1.6E-18 3.6E-23 223.6 19.4 198 13-249 568-769 (926)
74 KOG0346|consensus 99.8 2.1E-18 4.6E-23 195.8 15.3 215 2-250 152-410 (569)
75 COG1204 Superfamily II helicas 99.8 2.6E-18 5.6E-23 217.7 17.5 348 2-378 129-555 (766)
76 KOG0344|consensus 99.8 3.9E-18 8.4E-23 201.1 14.0 217 2-253 269-498 (593)
77 COG1202 Superfamily II helicas 99.8 2.5E-18 5.4E-23 200.0 12.1 213 8-248 327-551 (830)
78 TIGR00643 recG ATP-dependent D 99.7 1.9E-17 4E-22 209.5 19.3 207 2-247 345-563 (630)
79 PRK10917 ATP-dependent DNA hel 99.7 2.4E-17 5.2E-22 209.8 19.6 205 2-248 371-587 (681)
80 PRK01172 ski2-like helicase; P 99.7 1.3E-16 2.8E-21 204.1 25.7 122 670-795 22-147 (674)
81 TIGR03158 cas3_cyano CRISPR-as 99.7 4.5E-17 9.7E-22 192.8 18.3 183 16-232 143-357 (357)
82 COG1201 Lhr Lhr-like helicases 99.7 8.8E-17 1.9E-21 201.5 18.0 215 2-247 130-361 (814)
83 KOG0337|consensus 99.7 4.4E-17 9.6E-22 184.6 10.3 196 2-210 147-350 (529)
84 PF07717 OB_NTP_bind: Oligonuc 99.7 9.7E-18 2.1E-22 166.3 4.2 101 1025-1125 1-114 (114)
85 PF04408 HA2: Helicase associa 99.6 2.6E-16 5.6E-21 153.0 6.7 91 900-991 1-102 (102)
86 COG0514 RecQ Superfamily II DN 99.6 2.6E-15 5.7E-20 182.5 15.0 206 16-254 129-341 (590)
87 COG1111 MPH1 ERCC4-like helica 99.6 7.1E-15 1.5E-19 171.5 17.0 113 111-250 364-481 (542)
88 KOG0349|consensus 99.6 9.8E-16 2.1E-20 173.0 9.3 218 2-247 346-612 (725)
89 PHA02558 uvsW UvsW helicase; P 99.6 1.2E-14 2.6E-19 179.5 19.8 212 1-248 207-453 (501)
90 PRK13766 Hef nuclease; Provisi 99.6 1.2E-14 2.6E-19 189.1 19.1 108 111-249 363-478 (773)
91 PRK09401 reverse gyrase; Revie 99.6 7.9E-15 1.7E-19 194.0 14.7 197 1-232 185-429 (1176)
92 COG1205 Distinct helicase fami 99.6 1.6E-14 3.5E-19 185.9 15.0 215 2-237 174-412 (851)
93 PRK09694 helicase Cas3; Provis 99.5 6.8E-14 1.5E-18 179.6 18.2 187 19-236 440-664 (878)
94 smart00847 HA2 Helicase associ 99.5 6.2E-15 1.3E-19 140.5 6.2 90 900-991 1-92 (92)
95 PRK12898 secA preprotein trans 99.5 1.2E-13 2.6E-18 171.2 17.0 165 52-251 410-587 (656)
96 PRK14701 reverse gyrase; Provi 99.5 3.3E-14 7.1E-19 191.8 12.8 225 1-256 184-462 (1638)
97 PRK02362 ski2-like helicase; P 99.5 1.1E-12 2.3E-17 169.6 26.3 118 672-793 25-147 (737)
98 PRK09200 preprotein translocas 99.5 3.8E-13 8.2E-18 170.0 17.5 161 52-250 365-541 (790)
99 TIGR01054 rgy reverse gyrase. 99.5 1.8E-13 3.9E-18 181.5 14.6 179 2-203 185-411 (1171)
100 KOG0354|consensus 99.4 8.3E-13 1.8E-17 162.5 16.5 125 100-249 400-528 (746)
101 TIGR03714 secA2 accessory Sec 99.4 1.9E-12 4.1E-17 162.4 19.2 162 51-250 360-537 (762)
102 KOG0947|consensus 99.4 6.7E-13 1.5E-17 162.5 12.6 233 1-248 385-721 (1248)
103 TIGR00603 rad25 DNA repair hel 99.4 2.5E-12 5.3E-17 161.3 16.1 196 17-250 374-607 (732)
104 KOG0948|consensus 99.4 4.9E-13 1.1E-17 160.2 8.6 237 1-250 217-539 (1041)
105 KOG0950|consensus 99.4 1.4E-12 3.1E-17 161.2 12.9 227 5-251 328-612 (1008)
106 TIGR00631 uvrb excinuclease AB 99.4 2.3E-12 5E-17 162.4 14.1 126 96-249 427-552 (655)
107 COG4098 comFA Superfamily II D 99.4 1.2E-11 2.5E-16 138.3 16.8 191 17-234 201-401 (441)
108 TIGR00595 priA primosomal prot 99.3 5.4E-12 1.2E-16 155.5 14.7 206 16-244 91-375 (505)
109 TIGR00963 secA preprotein tran 99.3 1.1E-11 2.5E-16 154.6 17.4 162 52-250 342-517 (745)
110 PRK05298 excinuclease ABC subu 99.3 9.3E-12 2E-16 157.9 14.4 124 97-248 432-555 (652)
111 PRK12906 secA preprotein trans 99.3 2.1E-11 4.6E-16 153.4 17.0 162 52-249 377-552 (796)
112 PRK00254 ski2-like helicase; P 99.3 2.4E-10 5.3E-15 147.5 26.7 119 672-793 25-148 (720)
113 PRK05580 primosome assembly pr 99.3 2.2E-11 4.9E-16 155.1 16.8 206 16-244 256-543 (679)
114 KOG0351|consensus 99.3 1.7E-11 3.8E-16 157.3 15.4 201 19-255 386-597 (941)
115 COG4581 Superfamily II RNA hel 99.3 1.8E-11 4E-16 156.1 15.1 233 1-247 211-534 (1041)
116 COG1200 RecG RecG-like helicas 99.3 2.1E-11 4.5E-16 148.5 14.2 196 15-250 381-591 (677)
117 cd00079 HELICc Helicase superf 99.3 1.9E-11 4.1E-16 122.5 11.4 129 84-245 2-130 (131)
118 KOG0329|consensus 99.3 2.5E-12 5.5E-17 137.8 4.7 180 2-250 168-355 (387)
119 PRK12900 secA preprotein trans 99.2 1.1E-10 2.4E-15 147.6 15.8 162 52-251 535-712 (1025)
120 PF00271 Helicase_C: Helicase 99.2 1.6E-11 3.5E-16 113.0 5.2 73 145-235 6-78 (78)
121 COG1197 Mfd Transcription-repa 99.2 1.1E-10 2.5E-15 149.1 14.4 199 13-250 711-913 (1139)
122 KOG0952|consensus 99.2 3.9E-10 8.4E-15 140.5 18.0 225 15-250 235-491 (1230)
123 PRK04914 ATP-dependent helicas 99.2 7.4E-11 1.6E-15 152.8 11.6 120 103-249 483-604 (956)
124 PRK11448 hsdR type I restricti 99.2 7.2E-10 1.6E-14 146.7 20.9 121 112-255 697-821 (1123)
125 KOG0951|consensus 99.1 4.1E-10 8.9E-15 141.6 14.0 212 16-237 435-690 (1674)
126 COG1203 CRISPR-associated heli 99.1 2.5E-10 5.4E-15 146.9 12.1 186 18-235 338-536 (733)
127 cd00046 DEXDc DEAD-like helica 99.1 6.8E-10 1.5E-14 111.1 11.7 106 687-794 2-114 (144)
128 KOG0352|consensus 99.1 2.4E-10 5.2E-15 130.2 8.9 200 17-255 140-367 (641)
129 COG1204 Superfamily II helicas 99.0 2.2E-09 4.8E-14 137.1 17.0 116 675-793 37-156 (766)
130 PRK11634 ATP-dependent RNA hel 99.0 3.2E-09 7E-14 134.2 16.7 124 672-795 30-161 (629)
131 smart00490 HELICc helicase sup 99.0 5.7E-10 1.2E-14 102.3 6.3 72 146-235 11-82 (82)
132 KOG4150|consensus 99.0 2.1E-09 4.6E-14 125.7 12.3 201 16-237 410-630 (1034)
133 PTZ00424 helicase 45; Provisio 99.0 5.1E-09 1.1E-13 126.2 15.2 121 673-794 53-181 (401)
134 PRK11776 ATP-dependent RNA hel 99.0 5.8E-09 1.3E-13 128.2 15.8 121 673-794 29-158 (460)
135 PRK11192 ATP-dependent RNA hel 98.9 1.1E-08 2.5E-13 124.7 16.5 121 672-793 25-157 (434)
136 PRK04837 ATP-dependent RNA hel 98.9 6.9E-09 1.5E-13 126.2 14.2 121 673-794 33-168 (423)
137 PRK01297 ATP-dependent RNA hel 98.9 1.5E-08 3.2E-13 125.1 16.1 122 671-793 110-247 (475)
138 PRK11057 ATP-dependent DNA hel 98.9 7.9E-09 1.7E-13 130.9 13.8 110 673-794 28-150 (607)
139 PTZ00110 helicase; Provisional 98.9 2.3E-08 5E-13 125.1 15.3 121 673-794 155-288 (545)
140 smart00487 DEXDc DEAD-like hel 98.8 2.6E-08 5.7E-13 105.9 12.7 126 670-795 8-141 (201)
141 PF07652 Flavi_DEAD: Flaviviru 98.8 7.9E-09 1.7E-13 105.0 8.0 102 683-793 2-105 (148)
142 PF00270 DEAD: DEAD/DEAH box h 98.8 2.1E-08 4.5E-13 105.5 11.5 122 673-795 2-131 (169)
143 PLN00206 DEAD-box ATP-dependen 98.8 5.4E-08 1.2E-12 121.3 16.5 121 673-794 146-281 (518)
144 COG1061 SSL2 DNA or RNA helica 98.8 6.2E-08 1.3E-12 118.2 16.1 98 113-238 283-380 (442)
145 PRK13104 secA preprotein trans 98.8 8.2E-08 1.8E-12 122.2 16.7 123 52-189 381-509 (896)
146 KOG0353|consensus 98.8 7.4E-08 1.6E-12 108.4 13.8 169 16-201 213-396 (695)
147 TIGR00614 recQ_fam ATP-depende 98.8 1.1E-07 2.3E-12 117.4 16.4 109 674-794 15-138 (470)
148 PRK04537 ATP-dependent RNA hel 98.7 9.4E-08 2E-12 120.2 15.1 121 673-794 34-170 (572)
149 PRK10590 ATP-dependent RNA hel 98.7 1.3E-07 2.7E-12 116.4 16.0 121 673-794 26-160 (456)
150 PRK12904 preprotein translocas 98.7 1E-07 2.3E-12 121.1 14.3 121 52-189 367-495 (830)
151 PRK13107 preprotein translocas 98.7 2.2E-07 4.9E-12 117.9 16.4 122 52-189 386-514 (908)
152 TIGR01389 recQ ATP-dependent D 98.7 1.5E-07 3.1E-12 119.5 14.9 109 674-794 17-138 (591)
153 COG1202 Superfamily II helicas 98.6 4.5E-07 9.8E-12 107.5 16.2 119 667-793 216-348 (830)
154 KOG0953|consensus 98.6 1.7E-07 3.6E-12 111.0 12.6 124 108-250 352-477 (700)
155 cd00268 DEADc DEAD-box helicas 98.6 2.9E-07 6.3E-12 100.2 11.4 123 671-794 22-154 (203)
156 TIGR02562 cas3_yersinia CRISPR 98.6 7.1E-07 1.5E-11 114.3 15.9 97 117-237 760-882 (1110)
157 TIGR01587 cas3_core CRISPR-ass 98.5 1.2E-07 2.6E-12 112.7 6.9 108 687-794 1-135 (358)
158 PLN03137 ATP-dependent DNA hel 98.5 1.3E-06 2.8E-11 113.4 14.7 110 673-794 463-592 (1195)
159 KOG0949|consensus 98.3 7.8E-06 1.7E-10 102.1 14.9 89 149-255 965-1054(1330)
160 KOG0390|consensus 98.2 1.2E-05 2.6E-10 101.4 13.7 168 117-430 598-768 (776)
161 COG0556 UvrB Helicase subunit 98.2 4.4E-05 9.6E-10 90.9 16.6 161 51-238 387-549 (663)
162 TIGR00348 hsdR type I site-spe 98.1 7.5E-05 1.6E-09 95.9 18.4 113 113-248 514-649 (667)
163 TIGR00580 mfd transcription-re 98.0 5E-05 1.1E-09 99.8 14.8 102 686-794 473-584 (926)
164 COG4096 HsdR Type I site-speci 98.0 4.5E-05 9.7E-10 95.4 13.3 102 113-237 426-528 (875)
165 PHA02558 uvsW UvsW helicase; P 98.0 3E-05 6.6E-10 96.5 11.5 119 671-794 115-233 (501)
166 PRK10917 ATP-dependent DNA hel 98.0 3.8E-05 8.2E-10 99.0 12.3 101 687-794 284-394 (681)
167 PRK13767 ATP-dependent helicas 98.0 2.4E-05 5.2E-10 103.3 10.6 121 672-794 34-183 (876)
168 PF04851 ResIII: Type III rest 97.9 2.3E-05 5E-10 83.1 8.0 104 685-794 25-157 (184)
169 KOG0354|consensus 97.9 4.7E-05 1E-09 95.3 11.5 125 667-795 59-191 (746)
170 TIGR03158 cas3_cyano CRISPR-as 97.9 3.6E-05 7.8E-10 91.8 10.0 59 676-739 3-63 (357)
171 KOG0952|consensus 97.9 0.0003 6.5E-09 89.5 17.7 111 681-793 122-248 (1230)
172 PRK12903 secA preprotein trans 97.9 0.00025 5.5E-09 90.1 16.9 151 52-237 363-530 (925)
173 PRK09401 reverse gyrase; Revie 97.9 0.00014 3E-09 98.0 15.2 118 672-794 82-212 (1176)
174 TIGR00643 recG ATP-dependent D 97.8 0.00011 2.3E-09 94.2 12.7 101 687-794 258-368 (630)
175 PRK12326 preprotein translocas 97.8 0.00044 9.6E-09 86.9 16.9 150 52-237 364-538 (764)
176 COG1061 SSL2 DNA or RNA helica 97.8 0.00014 3.1E-09 89.1 12.4 121 667-795 33-158 (442)
177 PF13245 AAA_19: Part of AAA d 97.8 6.6E-05 1.4E-09 69.3 7.1 58 678-735 3-62 (76)
178 PRK13766 Hef nuclease; Provisi 97.8 0.00013 2.9E-09 95.7 12.8 120 671-794 16-142 (773)
179 KOG0948|consensus 97.7 0.00011 2.5E-09 90.0 10.2 115 671-793 130-245 (1041)
180 TIGR03817 DECH_helic helicase/ 97.7 0.00016 3.4E-09 94.0 12.3 118 671-794 37-168 (742)
181 TIGR02621 cas3_GSU0051 CRISPR- 97.7 0.00013 2.7E-09 94.0 10.6 129 671-805 16-188 (844)
182 PRK14701 reverse gyrase; Provi 97.7 0.00025 5.4E-09 97.8 13.9 117 672-794 81-211 (1638)
183 TIGR01407 dinG_rel DnaQ family 97.7 0.00029 6.4E-09 93.2 14.2 185 51-246 596-811 (850)
184 KOG0330|consensus 97.7 0.00019 4.2E-09 82.7 10.4 108 682-793 95-214 (476)
185 PLN03142 Probable chromatin-re 97.7 0.00019 4.1E-09 94.7 11.5 112 113-252 487-601 (1033)
186 COG4581 Superfamily II RNA hel 97.6 0.00022 4.7E-09 92.7 11.6 175 669-852 118-297 (1041)
187 COG1198 PriA Primosomal protei 97.6 0.00029 6.3E-09 89.6 12.3 213 16-250 311-604 (730)
188 TIGR03714 secA2 accessory Sec 97.6 0.00019 4E-09 91.6 10.5 122 665-794 63-206 (762)
189 PF13401 AAA_22: AAA domain; P 97.6 4.3E-05 9.2E-10 77.0 3.0 62 683-744 2-67 (131)
190 PRK12899 secA preprotein trans 97.5 0.0016 3.4E-08 84.1 16.7 154 51-237 504-672 (970)
191 TIGR01054 rgy reverse gyrase. 97.5 0.00063 1.4E-08 91.9 13.8 116 672-794 80-210 (1171)
192 KOG1123|consensus 97.5 0.0005 1.1E-08 81.1 10.4 105 100-236 531-636 (776)
193 PF00448 SRP54: SRP54-type pro 97.4 0.00012 2.6E-09 79.9 4.7 91 686-792 2-92 (196)
194 PRK05580 primosome assembly pr 97.4 0.00038 8.3E-09 89.6 9.9 118 672-797 146-272 (679)
195 COG1201 Lhr Lhr-like helicases 97.4 0.00043 9.4E-09 88.7 9.9 117 675-794 27-160 (814)
196 PRK12901 secA preprotein trans 97.4 0.0018 3.8E-08 83.9 14.8 151 52-237 565-732 (1112)
197 PRK10689 transcription-repair 97.4 0.00062 1.4E-08 91.7 10.9 102 686-794 622-733 (1147)
198 PRK11448 hsdR type I restricti 97.3 0.00096 2.1E-08 89.6 11.3 115 679-794 426-551 (1123)
199 PRK13103 secA preprotein trans 97.2 0.0032 7E-08 81.2 14.3 120 52-188 386-513 (913)
200 cd00009 AAA The AAA+ (ATPases 97.2 0.0013 2.9E-08 66.1 8.9 35 675-709 7-43 (151)
201 KOG0343|consensus 97.2 0.0003 6.6E-09 84.0 4.5 155 680-840 102-271 (758)
202 KOG0345|consensus 97.1 0.0035 7.5E-08 74.3 12.1 116 678-793 36-167 (567)
203 KOG0342|consensus 97.1 0.0016 3.5E-08 77.4 9.0 123 682-807 116-251 (543)
204 TIGR00603 rad25 DNA repair hel 97.0 0.0036 7.7E-08 80.1 12.3 116 671-793 256-385 (732)
205 KOG0331|consensus 97.0 0.0046 1E-07 75.7 12.6 111 682-793 125-249 (519)
206 CHL00122 secA preprotein trans 97.0 0.015 3.2E-07 75.0 17.4 123 52-188 361-490 (870)
207 COG1205 Distinct helicase fami 97.0 0.0021 4.5E-08 84.3 10.0 123 670-793 70-205 (851)
208 TIGR00595 priA primosomal prot 97.0 0.00077 1.7E-08 83.9 5.7 98 689-798 1-108 (505)
209 PF06862 DUF1253: Protein of u 97.0 0.017 3.7E-07 70.0 16.7 182 16-206 159-386 (442)
210 PRK13104 secA preprotein trans 97.0 0.0025 5.4E-08 82.3 10.2 124 665-793 75-212 (896)
211 PRK12899 secA preprotein trans 96.9 0.0038 8.3E-08 80.6 10.9 121 669-794 89-226 (970)
212 COG1111 MPH1 ERCC4-like helica 96.9 0.0027 5.9E-08 76.1 8.7 104 687-795 31-143 (542)
213 PF13604 AAA_30: AAA domain; P 96.9 0.0012 2.6E-08 72.1 5.2 58 675-734 7-65 (196)
214 TIGR00963 secA preprotein tran 96.8 0.0035 7.5E-08 79.9 9.4 125 664-793 48-186 (745)
215 KOG0352|consensus 96.8 0.0083 1.8E-07 70.1 11.2 33 676-708 27-61 (641)
216 smart00382 AAA ATPases associa 96.8 0.0014 3.1E-08 65.1 4.6 27 685-711 2-28 (148)
217 PRK04296 thymidine kinase; Pro 96.7 0.0035 7.6E-08 68.2 7.7 37 685-723 2-38 (190)
218 cd00268 DEADc DEAD-box helicas 96.7 0.0026 5.6E-08 69.3 6.5 70 1-71 125-198 (203)
219 TIGR03117 cas_csf4 CRISPR-asso 96.7 0.011 2.4E-07 75.0 12.8 57 675-733 6-64 (636)
220 PRK14722 flhF flagellar biosyn 96.7 0.0032 7E-08 75.0 7.4 89 682-792 134-224 (374)
221 COG1110 Reverse gyrase [DNA re 96.7 0.015 3.2E-07 74.8 13.1 132 49-203 275-419 (1187)
222 PF00270 DEAD: DEAD/DEAH box h 96.6 0.0019 4.2E-08 67.7 4.6 64 1-66 101-167 (169)
223 PF09848 DUF2075: Uncharacteri 96.6 0.0022 4.8E-08 76.5 5.5 90 686-793 2-93 (352)
224 PRK09751 putative ATP-dependen 96.6 0.0036 7.9E-08 85.4 8.0 104 690-793 1-134 (1490)
225 KOG0338|consensus 96.6 0.0048 1E-07 73.5 7.9 101 689-793 222-337 (691)
226 KOG0387|consensus 96.6 0.016 3.4E-07 72.7 12.6 114 113-253 546-661 (923)
227 KOG0953|consensus 96.6 0.0092 2E-07 72.0 10.1 94 686-793 192-285 (700)
228 PRK09200 preprotein translocas 96.6 0.0082 1.8E-07 77.6 10.2 131 665-802 71-216 (790)
229 TIGR03499 FlhF flagellar biosy 96.5 0.006 1.3E-07 70.6 8.2 60 683-742 192-253 (282)
230 PRK09694 helicase Cas3; Provis 96.5 0.0072 1.6E-07 79.3 9.4 55 683-737 299-353 (878)
231 KOG0947|consensus 96.4 0.012 2.6E-07 74.8 9.8 113 673-793 300-413 (1248)
232 PF13086 AAA_11: AAA domain; P 96.4 0.0047 1E-07 68.1 5.7 64 674-737 6-75 (236)
233 PRK12724 flagellar biosynthesi 96.4 0.008 1.7E-07 72.3 7.9 59 684-742 222-281 (432)
234 PRK12727 flagellar biosynthesi 96.3 0.0084 1.8E-07 73.8 8.1 71 665-740 335-407 (559)
235 PRK10875 recD exonuclease V su 96.3 0.009 2E-07 75.8 8.6 67 672-739 155-223 (615)
236 PRK12723 flagellar biosynthesi 96.3 0.012 2.5E-07 70.9 9.1 88 684-793 173-264 (388)
237 PRK10536 hypothetical protein; 96.3 0.0064 1.4E-07 68.7 6.4 55 670-724 59-113 (262)
238 PRK05703 flhF flagellar biosyn 96.3 0.02 4.4E-07 69.8 11.1 61 682-742 218-280 (424)
239 TIGR00604 rad3 DNA repair heli 96.3 0.028 6E-07 73.3 13.0 187 51-245 442-670 (705)
240 COG4098 comFA Superfamily II D 96.3 0.02 4.3E-07 65.8 9.9 114 675-801 106-220 (441)
241 PRK11889 flhF flagellar biosyn 96.3 0.011 2.3E-07 70.5 8.0 56 685-742 241-298 (436)
242 PRK07246 bifunctional ATP-depe 96.2 0.022 4.9E-07 75.0 11.9 114 676-794 255-447 (820)
243 COG0513 SrmB Superfamily II DN 96.2 0.021 4.5E-07 71.6 10.8 126 675-806 56-194 (513)
244 TIGR01448 recD_rel helicase, p 96.2 0.019 4.2E-07 74.6 10.8 64 673-740 326-389 (720)
245 PF00437 T2SE: Type II/IV secr 96.2 0.0072 1.6E-07 69.2 6.2 44 677-722 119-162 (270)
246 TIGR01447 recD exodeoxyribonuc 96.2 0.014 3.1E-07 73.9 9.2 64 674-738 150-216 (586)
247 COG1419 FlhF Flagellar GTP-bin 96.1 0.024 5.3E-07 67.4 10.3 88 683-792 201-290 (407)
248 PF02399 Herpes_ori_bp: Origin 96.1 0.024 5.1E-07 72.4 10.7 104 683-793 47-152 (824)
249 PRK14974 cell division protein 96.1 0.014 3.1E-07 68.8 8.1 57 685-743 140-198 (336)
250 PRK11747 dinG ATP-dependent DN 96.0 0.084 1.8E-06 68.6 15.0 179 51-246 457-671 (697)
251 PF13173 AAA_14: AAA domain 96.0 0.018 4E-07 58.3 7.3 27 684-710 1-27 (128)
252 KOG1803|consensus 96.0 0.015 3.2E-07 71.3 7.5 60 675-736 191-250 (649)
253 PRK12726 flagellar biosynthesi 95.8 0.013 2.9E-07 69.5 6.3 60 682-741 203-262 (407)
254 COG1618 Predicted nucleotide k 95.8 0.021 4.5E-07 59.6 6.9 47 688-753 8-57 (179)
255 PRK06526 transposase; Provisio 95.8 0.0066 1.4E-07 69.1 3.5 29 680-708 93-121 (254)
256 TIGR03015 pepcterm_ATPase puta 95.7 0.018 4E-07 65.5 6.9 32 678-709 35-67 (269)
257 PRK08074 bifunctional ATP-depe 95.7 0.091 2E-06 70.5 14.3 185 51-246 673-890 (928)
258 PF02562 PhoH: PhoH-like prote 95.7 0.013 2.9E-07 64.3 5.4 54 670-723 4-57 (205)
259 PF07652 Flavi_DEAD: Flaviviru 95.6 0.016 3.5E-07 59.7 5.1 60 1-61 78-137 (148)
260 PRK10867 signal recognition pa 95.6 0.033 7.2E-07 67.9 8.5 58 685-742 100-158 (433)
261 PRK07246 bifunctional ATP-depe 95.5 0.07 1.5E-06 70.4 12.0 136 94-246 630-780 (820)
262 cd01130 VirB11-like_ATPase Typ 95.5 0.049 1.1E-06 59.0 8.9 93 676-792 16-109 (186)
263 TIGR01407 dinG_rel DnaQ family 95.5 0.047 1E-06 72.6 10.5 54 676-733 255-310 (850)
264 TIGR02768 TraA_Ti Ti-type conj 95.5 0.038 8.2E-07 72.2 9.2 90 675-792 358-448 (744)
265 TIGR00348 hsdR type I site-spe 95.5 0.038 8.3E-07 71.4 9.1 122 668-794 237-376 (667)
266 PRK14956 DNA polymerase III su 95.4 0.027 5.9E-07 69.0 7.2 32 677-708 29-63 (484)
267 PRK13894 conjugal transfer ATP 95.4 0.03 6.6E-07 65.8 7.4 33 674-706 137-169 (319)
268 PRK10416 signal recognition pa 95.4 0.045 9.7E-07 64.4 8.6 55 684-740 113-169 (318)
269 PRK12904 preprotein translocas 95.4 0.033 7.2E-07 72.1 8.1 131 664-801 73-217 (830)
270 PRK06995 flhF flagellar biosyn 95.4 0.037 8E-07 68.2 8.1 60 683-742 254-315 (484)
271 PRK14957 DNA polymerase III su 95.2 0.037 8E-07 69.3 7.5 31 676-706 26-59 (546)
272 PF05970 PIF1: PIF1-like helic 95.2 0.042 9.2E-07 65.9 7.7 47 683-731 20-66 (364)
273 PRK07003 DNA polymerase III su 95.2 0.043 9.4E-07 70.0 7.9 33 676-708 26-61 (830)
274 PRK14721 flhF flagellar biosyn 95.2 0.052 1.1E-06 65.9 8.3 61 682-742 188-250 (420)
275 cd01120 RecA-like_NTPases RecA 95.2 0.05 1.1E-06 56.2 7.2 36 687-723 1-36 (165)
276 COG1199 DinG Rad3-related DNA 95.1 0.16 3.5E-06 65.7 13.4 185 51-248 404-616 (654)
277 TIGR02788 VirB11 P-type DNA tr 95.1 0.064 1.4E-06 62.9 8.8 29 678-706 137-165 (308)
278 PRK14723 flhF flagellar biosyn 95.1 0.039 8.5E-07 71.1 7.3 61 683-743 183-245 (767)
279 cd03115 SRP The signal recogni 95.1 0.041 8.8E-07 58.6 6.4 52 687-740 2-55 (173)
280 PRK14961 DNA polymerase III su 95.0 0.032 7E-07 66.9 6.0 33 676-708 26-61 (363)
281 PRK14962 DNA polymerase III su 95.0 0.04 8.6E-07 68.2 6.7 32 676-707 24-58 (472)
282 PRK00771 signal recognition pa 95.0 0.06 1.3E-06 65.8 8.1 58 685-742 95-152 (437)
283 PRK08903 DnaA regulatory inact 95.0 0.042 9.1E-07 61.2 6.4 26 683-708 40-65 (227)
284 PF05496 RuvB_N: Holliday junc 95.0 0.055 1.2E-06 60.0 7.0 17 686-702 51-67 (233)
285 PRK14955 DNA polymerase III su 94.9 0.038 8.3E-07 67.1 6.4 30 676-705 26-58 (397)
286 PF03266 NTPase_1: NTPase; In 94.9 0.047 1E-06 58.3 6.3 87 688-793 2-105 (168)
287 PRK13107 preprotein translocas 94.9 0.055 1.2E-06 70.2 7.8 121 665-793 75-212 (908)
288 smart00487 DEXDc DEAD-like hel 94.9 0.061 1.3E-06 56.9 7.1 69 1-70 111-183 (201)
289 PRK00080 ruvB Holliday junctio 94.8 0.058 1.3E-06 63.8 7.4 20 686-705 52-71 (328)
290 TIGR02782 TrbB_P P-type conjug 94.8 0.05 1.1E-06 63.5 6.7 48 675-722 122-169 (299)
291 PRK07994 DNA polymerase III su 94.8 0.038 8.2E-07 70.4 6.0 31 676-706 26-59 (647)
292 KOG0350|consensus 94.7 0.093 2E-06 63.1 8.5 104 687-793 185-305 (620)
293 COG1110 Reverse gyrase [DNA re 94.7 0.1 2.2E-06 67.6 9.2 104 681-793 93-213 (1187)
294 PRK12902 secA preprotein trans 94.7 0.069 1.5E-06 69.1 7.8 126 664-801 77-221 (939)
295 PRK13833 conjugal transfer pro 94.6 0.056 1.2E-06 63.6 6.5 48 675-722 134-181 (323)
296 PRK06645 DNA polymerase III su 94.6 0.08 1.7E-06 65.9 8.1 30 677-706 32-64 (507)
297 PF04408 HA2: Helicase associa 94.6 0.0095 2.1E-07 58.2 0.0 49 322-384 13-62 (102)
298 PF01695 IstB_IS21: IstB-like 94.6 0.033 7.2E-07 60.0 4.2 24 680-703 42-65 (178)
299 COG2804 PulE Type II secretory 94.6 0.091 2E-06 64.1 8.1 94 669-792 240-336 (500)
300 cd01124 KaiC KaiC is a circadi 94.6 0.043 9.2E-07 58.8 4.9 24 687-710 1-24 (187)
301 PRK08181 transposase; Validate 94.6 0.054 1.2E-06 62.2 6.0 25 681-705 102-126 (269)
302 TIGR00064 ftsY signal recognit 94.5 0.066 1.4E-06 61.6 6.6 55 684-740 71-127 (272)
303 PF07517 SecA_DEAD: SecA DEAD- 94.5 0.04 8.7E-07 62.9 4.8 122 666-793 71-207 (266)
304 PRK13851 type IV secretion sys 94.5 0.094 2E-06 62.3 8.0 44 677-723 154-197 (344)
305 PRK14873 primosome assembly pr 94.5 0.37 8E-06 62.1 13.8 204 16-250 255-539 (665)
306 TIGR00376 DNA helicase, putati 94.5 0.062 1.3E-06 69.0 6.9 63 674-738 162-224 (637)
307 CHL00122 secA preprotein trans 94.5 0.045 9.8E-07 70.7 5.5 126 665-800 69-211 (870)
308 TIGR00959 ffh signal recogniti 94.4 0.082 1.8E-06 64.5 7.5 57 686-742 100-157 (428)
309 PRK12898 secA preprotein trans 94.4 0.18 4E-06 64.2 10.7 133 666-803 97-260 (656)
310 PRK04195 replication factor C 94.4 0.12 2.7E-06 64.3 9.1 27 685-711 39-65 (482)
311 KOG0391|consensus 94.3 0.29 6.3E-06 63.7 12.0 130 94-253 1259-1390(1958)
312 PRK12402 replication factor C 94.3 0.079 1.7E-06 62.4 6.9 35 675-709 24-60 (337)
313 PRK12902 secA preprotein trans 94.3 0.45 9.8E-06 61.9 13.8 121 51-188 375-505 (939)
314 PF02399 Herpes_ori_bp: Origin 94.3 0.57 1.2E-05 60.3 14.6 98 113-237 282-379 (824)
315 TIGR02881 spore_V_K stage V sp 94.3 0.08 1.7E-06 60.5 6.6 20 686-705 43-62 (261)
316 TIGR00763 lon ATP-dependent pr 94.2 0.59 1.3E-05 61.7 15.3 36 671-706 325-368 (775)
317 PF05621 TniB: Bacterial TniB 94.2 0.1 2.3E-06 60.2 7.2 89 686-793 62-155 (302)
318 cd00046 DEXDc DEAD-like helica 94.2 0.058 1.3E-06 53.5 4.6 59 1-60 85-144 (144)
319 PRK08533 flagellar accessory p 94.2 0.074 1.6E-06 59.7 5.9 28 682-709 21-48 (230)
320 cd01128 rho_factor Transcripti 94.1 0.25 5.5E-06 56.1 10.1 142 681-849 12-164 (249)
321 PRK12323 DNA polymerase III su 94.1 0.1 2.2E-06 65.9 7.4 32 676-707 26-60 (700)
322 PRK11331 5-methylcytosine-spec 94.1 0.12 2.6E-06 63.0 7.7 34 675-708 184-217 (459)
323 PRK14949 DNA polymerase III su 94.1 0.081 1.8E-06 68.9 6.7 32 677-708 27-61 (944)
324 KOG0733|consensus 94.1 0.021 4.5E-07 70.0 1.3 22 772-793 271-292 (802)
325 PRK14958 DNA polymerase III su 94.1 0.12 2.7E-06 64.5 8.2 30 676-705 26-58 (509)
326 PRK08116 hypothetical protein; 94.1 0.12 2.5E-06 59.6 7.3 21 684-704 113-133 (268)
327 COG0653 SecA Preprotein transl 94.1 0.19 4.2E-06 64.7 9.9 157 16-189 308-494 (822)
328 PRK07764 DNA polymerase III su 94.1 0.089 1.9E-06 69.1 7.1 30 676-705 25-57 (824)
329 PHA02244 ATPase-like protein 94.0 0.074 1.6E-06 63.1 5.7 36 675-710 109-144 (383)
330 TIGR02525 plasmid_TraJ plasmid 94.0 0.097 2.1E-06 62.8 6.7 25 682-706 146-170 (372)
331 KOG0335|consensus 94.0 0.13 2.8E-06 62.6 7.6 118 681-804 107-245 (482)
332 PRK13826 Dtr system oriT relax 94.0 0.14 3.1E-06 68.5 8.8 85 682-793 394-478 (1102)
333 PHA00729 NTP-binding motif con 93.9 0.089 1.9E-06 58.6 5.9 17 687-703 19-35 (226)
334 PRK14960 DNA polymerase III su 93.9 0.1 2.2E-06 66.0 7.0 31 675-705 24-57 (702)
335 PRK14952 DNA polymerase III su 93.9 0.15 3.2E-06 64.7 8.4 31 676-706 23-56 (584)
336 TIGR00635 ruvB Holliday juncti 93.9 0.16 3.4E-06 59.3 8.1 21 686-706 31-51 (305)
337 PF00176 SNF2_N: SNF2 family N 93.9 0.4 8.6E-06 55.1 11.4 103 683-794 23-145 (299)
338 PRK06921 hypothetical protein; 93.9 0.13 2.8E-06 59.2 7.2 23 684-706 116-138 (266)
339 smart00847 HA2 Helicase associ 93.8 0.017 3.6E-07 55.0 -0.0 49 322-384 13-63 (92)
340 PRK13889 conjugal transfer rel 93.8 0.13 2.8E-06 68.6 8.0 55 675-731 352-406 (988)
341 PRK14969 DNA polymerase III su 93.8 0.13 2.8E-06 64.7 7.8 31 676-706 26-59 (527)
342 PRK14953 DNA polymerase III su 93.8 0.19 4.1E-06 62.6 9.1 23 771-793 107-129 (486)
343 PRK09183 transposase/IS protei 93.8 0.075 1.6E-06 60.8 5.2 27 682-708 99-125 (259)
344 TIGR02533 type_II_gspE general 93.8 0.18 3.9E-06 62.7 8.8 32 676-707 232-264 (486)
345 PRK10787 DNA-binding ATP-depen 93.8 0.67 1.5E-05 61.0 14.3 32 672-703 328-367 (784)
346 PRK00411 cdc6 cell division co 93.7 0.13 2.7E-06 62.3 7.2 23 686-708 56-78 (394)
347 PF05127 Helicase_RecD: Helica 93.7 0.02 4.3E-07 61.5 0.2 93 689-793 1-100 (177)
348 COG1203 CRISPR-associated heli 93.6 0.11 2.5E-06 67.8 6.9 54 684-738 212-269 (733)
349 PF13555 AAA_29: P-loop contai 93.6 0.046 1E-06 48.4 2.3 18 686-703 24-41 (62)
350 TIGR00678 holB DNA polymerase 93.6 0.15 3.2E-06 55.1 6.7 31 677-707 3-36 (188)
351 PRK08084 DNA replication initi 93.5 0.12 2.7E-06 58.1 6.2 25 684-708 44-68 (235)
352 PRK13103 secA preprotein trans 93.5 0.082 1.8E-06 68.7 5.3 128 665-802 75-219 (913)
353 PRK05342 clpX ATP-dependent pr 93.5 0.14 3E-06 62.3 7.0 20 685-704 108-127 (412)
354 PRK10865 protein disaggregatio 93.5 0.18 4E-06 66.9 8.6 82 686-793 599-680 (857)
355 PRK08691 DNA polymerase III su 93.5 0.13 2.9E-06 65.6 6.9 32 676-707 26-60 (709)
356 PF13307 Helicase_C_2: Helicas 93.4 0.044 9.6E-07 58.4 2.2 123 113-246 9-147 (167)
357 PRK11034 clpA ATP-dependent Cl 93.4 0.14 3E-06 66.8 7.1 20 686-705 489-508 (758)
358 TIGR02524 dot_icm_DotB Dot/Icm 93.3 0.12 2.6E-06 61.8 5.8 30 677-706 125-155 (358)
359 PRK06731 flhF flagellar biosyn 93.3 0.2 4.4E-06 57.5 7.5 57 684-740 74-130 (270)
360 PF05729 NACHT: NACHT domain 93.2 0.055 1.2E-06 56.3 2.6 23 686-708 1-23 (166)
361 PRK07133 DNA polymerase III su 93.2 0.17 3.7E-06 65.1 7.3 30 676-705 28-60 (725)
362 KOG0344|consensus 93.1 0.28 6.1E-06 60.3 8.7 111 679-793 167-298 (593)
363 PRK14964 DNA polymerase III su 93.1 0.22 4.7E-06 61.8 8.0 26 677-702 24-52 (491)
364 KOG0340|consensus 93.1 0.31 6.8E-06 56.6 8.5 117 675-792 34-162 (442)
365 KOG0348|consensus 93.1 0.34 7.4E-06 58.8 9.1 122 683-807 172-308 (708)
366 PRK08727 hypothetical protein; 93.1 0.094 2E-06 59.0 4.4 22 685-706 41-62 (233)
367 PRK11823 DNA repair protein Ra 93.1 0.13 2.9E-06 63.3 6.1 35 676-710 70-105 (446)
368 PRK14950 DNA polymerase III su 93.1 0.16 3.5E-06 64.8 7.0 32 676-707 26-60 (585)
369 TIGR02639 ClpA ATP-dependent C 93.1 0.2 4.4E-06 65.6 8.1 18 687-704 486-503 (731)
370 TIGR02397 dnaX_nterm DNA polym 93.1 0.42 9E-06 56.9 10.1 31 675-705 23-56 (355)
371 PRK14951 DNA polymerase III su 93.1 0.16 3.5E-06 64.7 6.8 29 677-705 27-58 (618)
372 PRK06835 DNA replication prote 93.0 0.2 4.4E-06 59.2 7.2 19 684-702 182-200 (329)
373 PF01443 Viral_helicase1: Vira 93.0 0.081 1.8E-06 58.9 3.7 22 688-709 1-22 (234)
374 KOG0333|consensus 93.0 0.13 2.9E-06 62.1 5.5 118 681-806 278-416 (673)
375 PRK06893 DNA replication initi 93.0 0.14 3.1E-06 57.4 5.6 25 684-708 38-62 (229)
376 PRK06067 flagellar accessory p 93.0 0.11 2.3E-06 58.3 4.6 46 676-722 15-61 (234)
377 TIGR02538 type_IV_pilB type IV 92.9 0.22 4.8E-06 63.3 7.8 33 675-707 305-338 (564)
378 PRK07952 DNA replication prote 92.9 0.17 3.7E-06 57.3 6.1 23 686-708 100-122 (244)
379 TIGR03420 DnaA_homol_Hda DnaA 92.9 0.13 2.8E-06 57.0 5.2 26 683-708 36-61 (226)
380 PF00580 UvrD-helicase: UvrD/R 92.9 0.14 2.9E-06 59.3 5.5 61 677-740 7-70 (315)
381 COG1484 DnaC DNA replication p 92.9 0.23 4.9E-06 56.7 7.1 27 677-703 97-123 (254)
382 PRK10436 hypothetical protein; 92.9 0.24 5.3E-06 61.1 7.9 33 676-708 208-241 (462)
383 TIGR02880 cbbX_cfxQ probable R 92.9 0.19 4.1E-06 58.3 6.6 35 687-721 60-97 (284)
384 COG3910 Predicted ATPase [Gene 92.9 0.095 2.1E-06 56.1 3.7 51 661-713 15-65 (233)
385 TIGR01425 SRP54_euk signal rec 92.9 0.11 2.4E-06 63.1 4.9 54 685-740 100-155 (429)
386 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.8 0.097 2.1E-06 54.3 3.7 74 682-792 23-97 (144)
387 cd03247 ABCC_cytochrome_bd The 92.8 0.098 2.1E-06 56.1 3.9 96 682-792 25-125 (178)
388 PTZ00293 thymidine kinase; Pro 92.8 0.23 4.9E-06 54.9 6.7 38 685-724 4-41 (211)
389 PRK13900 type IV secretion sys 92.8 0.18 3.8E-06 59.8 6.3 31 676-706 151-181 (332)
390 PRK14959 DNA polymerase III su 92.7 0.21 4.6E-06 63.3 7.2 31 675-705 25-58 (624)
391 cd03222 ABC_RNaseL_inhibitor T 92.7 0.17 3.7E-06 54.5 5.6 77 681-792 21-98 (177)
392 PF01637 Arch_ATPase: Archaeal 92.7 0.064 1.4E-06 59.0 2.4 34 676-709 9-44 (234)
393 PRK09435 membrane ATPase/prote 92.7 0.26 5.7E-06 58.2 7.4 32 676-707 43-78 (332)
394 TIGR02928 orc1/cdc6 family rep 92.6 0.2 4.4E-06 59.8 6.7 22 686-707 41-62 (365)
395 PRK08074 bifunctional ATP-depe 92.6 0.55 1.2E-05 63.2 11.3 35 760-794 431-466 (928)
396 cd01131 PilT Pilus retraction 92.6 0.13 2.8E-06 56.4 4.5 23 686-708 2-24 (198)
397 PRK00440 rfc replication facto 92.6 0.4 8.7E-06 55.9 8.9 32 676-707 27-60 (319)
398 PRK14970 DNA polymerase III su 92.5 0.18 3.9E-06 60.5 6.1 30 676-705 27-59 (367)
399 PRK05896 DNA polymerase III su 92.5 0.15 3.3E-06 64.3 5.5 30 676-705 26-58 (605)
400 KOG0951|consensus 92.5 0.94 2E-05 60.0 12.4 208 15-234 1250-1484(1674)
401 cd03223 ABCD_peroxisomal_ALDP 92.5 0.092 2E-06 55.8 3.1 24 682-705 24-47 (166)
402 PRK09112 DNA polymerase III su 92.5 0.14 3E-06 61.2 4.9 32 675-706 32-66 (351)
403 KOG0385|consensus 92.4 0.78 1.7E-05 58.0 11.2 114 113-254 487-603 (971)
404 TIGR03689 pup_AAA proteasome A 92.4 0.22 4.8E-06 62.0 6.7 19 684-702 215-233 (512)
405 PHA02544 44 clamp loader, smal 92.4 0.22 4.7E-06 58.4 6.4 32 676-707 31-65 (316)
406 KOG0392|consensus 92.4 0.47 1E-05 62.5 9.5 115 114-253 1341-1457(1549)
407 PRK14965 DNA polymerase III su 92.3 0.24 5.3E-06 63.0 7.1 32 675-706 25-59 (576)
408 cd00267 ABC_ATPase ABC (ATP-bi 92.3 0.14 3.1E-06 53.5 4.2 24 682-705 22-45 (157)
409 cd01129 PulE-GspE PulE/GspE Th 92.3 0.16 3.4E-06 58.3 4.9 33 676-708 70-103 (264)
410 PLN03025 replication factor C 92.2 0.24 5.2E-06 58.3 6.5 23 686-708 35-57 (319)
411 cd03246 ABCC_Protease_Secretio 92.2 0.14 2.9E-06 54.8 4.0 96 682-792 25-123 (173)
412 PRK09111 DNA polymerase III su 92.2 0.44 9.6E-06 60.7 9.0 30 676-705 34-66 (598)
413 KOG1000|consensus 92.1 0.38 8.3E-06 57.9 7.8 81 110-199 489-571 (689)
414 PRK14963 DNA polymerase III su 92.1 0.24 5.3E-06 61.9 6.6 32 676-707 24-58 (504)
415 CHL00181 cbbX CbbX; Provisiona 92.1 0.29 6.3E-06 56.9 6.9 37 685-721 59-98 (287)
416 PRK14954 DNA polymerase III su 92.1 0.21 4.6E-06 63.7 6.1 30 676-705 26-58 (620)
417 PRK08451 DNA polymerase III su 92.1 0.26 5.7E-06 61.7 6.8 32 675-706 23-57 (535)
418 TIGR03345 VI_ClpV1 type VI sec 92.1 0.29 6.2E-06 65.1 7.5 81 687-793 598-678 (852)
419 cd01393 recA_like RecA is a b 92.1 0.23 4.9E-06 55.2 5.7 34 676-709 9-43 (226)
420 cd03216 ABC_Carb_Monos_I This 92.0 0.18 3.9E-06 53.4 4.5 86 682-792 23-109 (163)
421 PRK09087 hypothetical protein; 91.9 0.28 6.1E-06 55.0 6.2 22 684-705 43-64 (226)
422 PRK12377 putative replication 91.9 0.39 8.6E-06 54.5 7.4 24 684-707 100-123 (248)
423 PRK12326 preprotein translocas 91.8 0.33 7.2E-06 62.0 7.2 129 665-801 71-214 (764)
424 COG1219 ClpX ATP-dependent pro 91.7 0.2 4.4E-06 57.5 4.7 25 769-793 145-172 (408)
425 TIGR03117 cas_csf4 CRISPR-asso 91.7 3.3 7.1E-05 53.2 15.9 128 96-236 454-603 (636)
426 PF13671 AAA_33: AAA domain; P 91.6 0.15 3.2E-06 52.1 3.3 24 687-710 1-24 (143)
427 PRK04914 ATP-dependent helicas 91.6 0.6 1.3E-05 62.3 9.7 105 685-794 169-283 (956)
428 cd03228 ABCC_MRP_Like The MRP 91.6 0.23 5E-06 52.9 4.9 24 682-705 25-48 (171)
429 COG2255 RuvB Holliday junction 91.6 0.28 6.1E-06 55.8 5.6 62 687-795 54-115 (332)
430 PRK05563 DNA polymerase III su 91.5 0.46 1E-05 60.3 8.2 30 677-706 27-59 (559)
431 TIGR00362 DnaA chromosomal rep 91.5 0.14 3E-06 62.4 3.5 18 686-703 137-154 (405)
432 cd01121 Sms Sms (bacterial rad 91.5 0.3 6.4E-06 58.8 6.1 35 676-710 72-107 (372)
433 cd03282 ABC_MSH4_euk MutS4 hom 91.4 0.073 1.6E-06 58.7 0.9 22 684-705 28-49 (204)
434 KOG0339|consensus 91.4 0.58 1.3E-05 56.5 8.1 116 677-793 252-380 (731)
435 PRK00149 dnaA chromosomal repl 91.4 0.17 3.6E-06 62.7 4.0 21 686-706 149-169 (450)
436 COG4107 PhnK ABC-type phosphon 91.3 0.31 6.7E-06 51.5 5.2 51 682-734 29-83 (258)
437 TIGR02858 spore_III_AA stage I 91.2 0.55 1.2E-05 54.1 7.7 32 675-706 98-132 (270)
438 KOG2373|consensus 91.1 0.11 2.3E-06 60.0 1.8 35 675-709 263-297 (514)
439 COG1126 GlnQ ABC-type polar am 91.1 0.11 2.5E-06 56.9 1.9 23 682-704 25-47 (240)
440 COG1136 SalX ABC-type antimicr 91.1 0.11 2.4E-06 57.8 1.9 23 682-704 28-50 (226)
441 PRK12906 secA preprotein trans 91.1 0.39 8.4E-06 62.4 6.9 133 665-802 73-217 (796)
442 PRK13342 recombination factor 91.0 0.36 7.7E-06 59.1 6.4 29 678-706 27-57 (413)
443 PRK06647 DNA polymerase III su 91.0 0.37 8E-06 61.1 6.6 33 676-708 26-61 (563)
444 PRK14087 dnaA chromosomal repl 91.0 0.2 4.4E-06 61.8 4.3 20 686-706 142-161 (450)
445 TIGR02655 circ_KaiC circadian 91.0 0.32 6.9E-06 60.7 6.0 31 680-710 258-288 (484)
446 TIGR00750 lao LAO/AO transport 90.9 0.2 4.4E-06 58.5 3.9 26 683-708 32-57 (300)
447 PRK13695 putative NTPase; Prov 90.8 0.39 8.5E-06 51.2 5.8 20 688-707 3-22 (174)
448 PF00308 Bac_DnaA: Bacterial d 90.8 0.19 4.2E-06 56.0 3.4 18 686-703 35-52 (219)
449 COG4962 CpaF Flp pilus assembl 90.7 0.3 6.4E-06 57.2 4.9 45 676-723 164-208 (355)
450 TIGR02688 conserved hypothetic 90.7 0.27 5.8E-06 59.4 4.7 27 677-703 201-227 (449)
451 TIGR03877 thermo_KaiC_1 KaiC d 90.6 0.21 4.6E-06 56.3 3.6 40 681-721 17-56 (237)
452 TIGR01420 pilT_fam pilus retra 90.6 0.31 6.6E-06 58.1 5.1 31 677-707 113-144 (343)
453 PF00265 TK: Thymidine kinase; 90.6 0.24 5.2E-06 53.4 3.8 37 686-724 2-38 (176)
454 PRK14738 gmk guanylate kinase; 90.6 0.2 4.3E-06 55.3 3.2 26 684-710 12-37 (206)
455 PF13207 AAA_17: AAA domain; P 90.5 0.21 4.6E-06 49.5 3.2 18 687-704 1-18 (121)
456 PF03193 DUF258: Protein of un 90.4 0.24 5.1E-06 52.5 3.5 32 676-708 27-58 (161)
457 KOG0336|consensus 90.4 1 2.2E-05 53.2 8.8 112 682-793 254-377 (629)
458 PRK03992 proteasome-activating 90.3 0.24 5.2E-06 60.1 4.0 24 685-708 165-188 (389)
459 PRK12422 chromosomal replicati 90.3 0.33 7.2E-06 59.8 5.2 21 686-706 142-162 (445)
460 PRK14948 DNA polymerase III su 90.3 0.48 1E-05 60.7 6.8 32 676-707 26-60 (620)
461 KOG1805|consensus 90.2 0.48 1E-05 61.3 6.5 62 673-736 673-734 (1100)
462 cd01122 GP4d_helicase GP4d_hel 90.2 0.18 3.9E-06 57.7 2.6 47 664-710 3-55 (271)
463 PRK14971 DNA polymerase III su 90.2 0.73 1.6E-05 59.1 8.3 31 675-706 26-59 (614)
464 PRK06305 DNA polymerase III su 90.1 0.47 1E-05 58.6 6.3 31 676-706 27-60 (451)
465 PF00005 ABC_tran: ABC transpo 90.0 0.13 2.9E-06 52.1 1.3 24 682-705 8-31 (137)
466 COG3839 MalK ABC-type sugar tr 90.0 0.15 3.3E-06 60.0 1.9 24 682-705 26-49 (338)
467 cd01123 Rad51_DMC1_radA Rad51_ 90.0 0.33 7.2E-06 54.2 4.5 34 676-709 9-43 (235)
468 PRK08939 primosomal protein Dn 90.0 0.68 1.5E-05 54.3 7.2 25 684-708 155-179 (306)
469 TIGR00767 rho transcription te 89.9 0.65 1.4E-05 55.9 7.0 25 681-705 164-188 (415)
470 COG5008 PilU Tfp pilus assembl 89.9 0.32 7E-06 54.6 4.1 27 681-707 123-149 (375)
471 COG1117 PstB ABC-type phosphat 89.9 0.17 3.7E-06 55.4 1.9 24 682-705 30-53 (253)
472 PRK07940 DNA polymerase III su 89.9 0.57 1.2E-05 56.9 6.6 23 771-793 105-127 (394)
473 TIGR03346 chaperone_ClpB ATP-d 89.8 0.95 2.1E-05 60.5 9.2 88 670-793 174-276 (852)
474 COG1102 Cmk Cytidylate kinase 89.8 0.38 8.3E-06 50.6 4.3 17 687-703 2-18 (179)
475 COG1116 TauB ABC-type nitrate/ 89.7 0.17 3.6E-06 56.8 1.8 23 682-704 26-48 (248)
476 TIGR03263 guanyl_kin guanylate 89.6 0.25 5.5E-06 52.7 3.1 22 685-706 1-22 (180)
477 PRK10865 protein disaggregatio 89.6 1 2.2E-05 60.2 9.1 36 670-705 179-219 (857)
478 PF13191 AAA_16: AAA ATPase do 89.6 0.25 5.4E-06 52.6 2.9 25 683-707 22-46 (185)
479 cd03214 ABC_Iron-Siderophores_ 89.6 0.17 3.7E-06 54.4 1.7 24 682-705 22-45 (180)
480 PRK14712 conjugal transfer nic 89.5 1.3 2.9E-05 61.6 10.3 140 16-163 366-513 (1623)
481 PRK00300 gmk guanylate kinase; 89.5 0.24 5.3E-06 54.1 2.9 25 683-707 3-27 (205)
482 COG4096 HsdR Type I site-speci 89.4 2 4.3E-05 55.3 10.9 112 677-795 176-297 (875)
483 smart00763 AAA_PrkA PrkA AAA d 89.4 0.72 1.6E-05 54.9 6.8 22 684-705 77-98 (361)
484 PRK14088 dnaA chromosomal repl 89.4 0.42 9E-06 59.0 5.0 18 686-703 131-148 (440)
485 KOG1970|consensus 89.2 0.4 8.6E-06 58.8 4.5 28 684-711 109-136 (634)
486 TIGR01243 CDC48 AAA family ATP 89.2 0.51 1.1E-05 62.0 5.9 26 684-709 486-511 (733)
487 cd03227 ABC_Class2 ABC-type Cl 89.1 0.54 1.2E-05 49.7 5.1 25 686-710 22-46 (162)
488 PRK05973 replicative DNA helic 89.1 0.32 6.9E-06 54.8 3.5 36 675-710 54-89 (237)
489 PF07724 AAA_2: AAA domain (Cd 89.1 0.29 6.3E-06 52.5 3.0 15 687-701 5-19 (171)
490 PF06745 KaiC: KaiC; InterPro 88.9 0.29 6.3E-06 54.5 3.0 31 680-710 14-44 (226)
491 CHL00095 clpC Clp protease ATP 88.9 0.8 1.7E-05 60.9 7.5 17 687-703 541-557 (821)
492 COG0467 RAD55 RecA-superfamily 88.9 0.34 7.5E-06 55.3 3.6 35 676-710 13-48 (260)
493 PRK05642 DNA replication initi 88.8 0.46 1E-05 53.5 4.6 19 686-704 46-64 (234)
494 COG1373 Predicted ATPase (AAA+ 88.8 0.87 1.9E-05 55.4 7.2 37 673-710 24-61 (398)
495 TIGR01360 aden_kin_iso1 adenyl 88.8 0.35 7.5E-06 51.8 3.4 27 685-711 3-29 (188)
496 cd03114 ArgK-like The function 88.8 0.66 1.4E-05 48.5 5.3 22 687-708 1-22 (148)
497 TIGR00150 HI0065_YjeE ATPase, 88.8 0.55 1.2E-05 48.3 4.6 36 675-710 12-47 (133)
498 PLN00020 ribulose bisphosphate 88.7 0.52 1.1E-05 56.0 4.9 26 685-710 148-173 (413)
499 PF00931 NB-ARC: NB-ARC domain 88.7 0.68 1.5E-05 53.2 6.0 68 675-742 5-77 (287)
500 TIGR02640 gas_vesic_GvpN gas v 88.7 0.45 9.7E-06 54.5 4.4 35 672-706 8-42 (262)
No 1
>KOG0923|consensus
Probab=100.00 E-value=5.2e-182 Score=1563.43 Aligned_cols=692 Identities=66% Similarity=1.080 Sum_probs=653.1
Q ss_pred CCcchhHhHHHHHHHHhhhhhhhhccccccccchHHHHHHHHHhhhhHHhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q psy1907 447 DSDDDRKERDEFSERLKNRDKNNTKNVATSRQDKRAYEEAAKRLKLEAESRDKIIPKLRIESRRKYLEKRKEDKVAELEA 526 (1320)
Q Consensus 447 ~~~~d~~erd~~a~r~~~rd~~rt~~~~~~~~~~~~~~e~~~r~~~~~~~~~~~~~~lR~~sR~~Yl~kRe~~kl~~~~~ 526 (1320)
++..|.+||++|++|+++||++||++++|+ |..++++++|++++.++.. .||+.||++||+|||.+|+++|++
T Consensus 41 ~~~~d~~eR~e~e~~l~~kdk~rtr~~~e~---k~~~ee~~~r~~~~~ed~~----~lR~~Sr~eyl~~r~~~k~e~L~~ 113 (902)
T KOG0923|consen 41 ERQNDLKERDELEERLEKKDKDRTRNVVER---KKSYEEAAKRKALEPEDRT----KLRKKSRREYLKKREQKKLEELEA 113 (902)
T ss_pred HHhhhHHHHHHHHHHHHHhhHHhhhhcccc---hhhHHHHHHhhccCcchhh----HHhhhhhhhhhhhHHHHHHHHHHh
Confidence 355689999999999999999999999997 3367888888866655543 499999999999999999999999
Q ss_pred hhhhhhhhchhhhccHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhc-ccccCCC-CC-CCCcchhh-hhhccCcchhhhh
Q psy1907 527 DILDDEYLFSEQELTERERRDREHKRKLLELAKEHDK-ARELEKVQ-RYYMPKG-TK-GPEKYEEV-DEKEKVPHYEQRK 601 (1320)
Q Consensus 527 ~~~~~~~~~~~~~lt~~E~~e~~~kk~~l~l~~~~~~-~~~~~~~~-~~~~~~~-~~-~~~~~~~~-~~~~~~~~~~~~~ 601 (1320)
+|.|+++||++++||++|++|+++|+++|++.+++.+ +++..... .|++|.. ++ .+.+|++. ++.+..+.++|+.
T Consensus 114 ~i~D~~~lf~~eklt~~e~~ele~kkell~~~~~~~~~~~~~~e~~~~y~~~~~~d~~~~~ry~d~~~~e~~~p~~eq~~ 193 (902)
T KOG0923|consen 114 EIEDEEYLFGDEKLTKREIRELEYKKELLDRGTKETESASEVEEYRSRYDQPGELDKVEPQRYVDLDEEEKVNPGAEQRA 193 (902)
T ss_pred hhcchhhhcccchhhhhhHhhhhhHHhhhhhhhhhhhcccchHHHHhhhcccccchhhhhHHHhcccchhccChHHHHHH
Confidence 9999999999999999999999999999997765544 33334444 7888953 33 38899884 4455677899999
Q ss_pred hHHHhhhhhhhhcCccchh-hhhhhhhhhhhh--hhhHHhccCCCCCCCchhhhhHHHhhhhhHHHHhccCCChhhHHHH
Q psy1907 602 WEDEQMSSAIFRVGAKDRE-HQEQYELLLDNQ--IDFIQALSLPGNRDKGEEEMTEKQKKKLNIEETKKSLPIYPFKQDL 678 (1320)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~LPi~~~~~~i 678 (1320)
||++|+++|..++|+++.. .+++|++|||++ |||+++..++|.++...........+..+|++.|++||||.+|++|
T Consensus 194 WEd~ql~~a~~~~ga~~~~~~~~~ye~vfdd~~~idF~~e~~~~~~~e~~~~~~~~~~~~~~~iee~RksLPVy~ykdel 273 (902)
T KOG0923|consen 194 WEDHQLGNAMLKFGAKDAKEGSDGYEFVFDDQIVIDFIQESKLAGSNEEDAKDAPTAYERRESIEEVRKSLPVYPYKDEL 273 (902)
T ss_pred HHHHHhhhhHhhcCCCcCcccccCceeeccchhhhhHHHhhhccccCccccchhhHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 9999999999999999986 589999999996 9999999999998766555445555789999999999999999999
Q ss_pred HHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccCC
Q psy1907 679 IDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTS 758 (1320)
Q Consensus 679 l~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~s 758 (1320)
|.+|++|||+||+|||||||||||||||+|+||+++|++|+|||||||||||||.|||+|||++||++|||+||||||||
T Consensus 274 l~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEdcTS 353 (902)
T KOG0923|consen 274 LKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFEDCTS 353 (902)
T ss_pred HHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEEEeccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEccHHHHHHHhcCCCCCCccEEEEcccccc-------------------------------------------
Q psy1907 759 ERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPK------------------------------------------- 795 (1320)
Q Consensus 759 ~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER------------------------------------------- 795 (1320)
++|+|+|||||||||||++||+|++||||||||||||
T Consensus 354 ekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT~DAekFS~fFDdap 433 (902)
T KOG0923|consen 354 EKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATMDAEKFSAFFDDAP 433 (902)
T ss_pred cceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeeccccCHHHHHHhccCCc
Confidence 9999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 434 IF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiY 513 (902)
T KOG0923|consen 434 IFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIY 513 (902)
T ss_pred EEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeecc
Confidence
Q ss_pred --------------------------------------eEEEcCCccceeeccCCCCcceeEEEEecHhhHHHHhcccCC
Q psy1907 796 --------------------------------------VYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGRAGR 837 (1320)
Q Consensus 796 --------------------------------------~~ViD~G~~k~~~y~~~~~~~~L~~~~iSkasa~QR~GRAGR 837 (1320)
.||||+||+|++.|||++||++|.++|||||||+||+|||||
T Consensus 514 aNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGR 593 (902)
T KOG0923|consen 514 ANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGR 593 (902)
T ss_pred ccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCC
Confidence 699999999999999999999999999999999999999999
Q ss_pred ccCCeEEEecchHHhhhhccCCCchhhhccChHHHHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccccCCCCCc
Q psy1907 838 VAAGKCFRLYTAWAYKHELEDNTVPEIQRINLGNAVLMLKALGINDLIHFDFLDPPPHETLVLALEQLYALGALNHHGDL 917 (1320)
Q Consensus 838 ~~pG~cyrLyt~~~~~~~l~~~~~PEI~R~~L~~~vL~lk~lgi~d~~~f~fldpP~~~~l~~Ale~L~~LgAld~~g~L 917 (1320)
|+||+||||||.++|.+++++.++|||||+||+++||.||+|||+|+++||||||||.++|..|+++||+|||||..|+|
T Consensus 594 tgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~~GeL 673 (902)
T KOG0923|consen 594 TGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHFDFLDPPPTETLLKALEQLYALGALNHLGEL 673 (902)
T ss_pred CCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhcccccCCCCChHHHHHHHHHHHHhhccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCChhhHHHHHhhhhccchHHHHHHHhhcccCCccccCChhHHHHHHHHHhhhcccCCCHHHHHHHHHHH
Q psy1907 918 TKLGRRMAEFPLDPMMGKMLLASEKYKCVEEIVTIASMLSVNGAIFYRPKDKIIHADTARKNFFMLGGDHLVLLNIYNQW 997 (1320)
Q Consensus 918 T~lG~~ma~lPldP~laK~Ll~s~~~~c~~e~ltIaA~Lsv~~~~f~~p~~~~~~a~~~r~~f~~~~gDhltllnvy~~w 997 (1320)
|.+|++|++||+||+++|||+++..++|++|++||+||||+++++||+|+++.++||++++.|..+.|||+++|++|++|
T Consensus 674 Tk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~~~~gDhi~~L~vyn~w 753 (902)
T KOG0923|consen 674 TKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFEEPVGDHIVLLNVYNQW 753 (902)
T ss_pred hhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccCCCCcchhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccchhhHHhhccchhhHHHHHHHHHHHHHHHHhhhccccCCCccchHHHHHHHhccccchhhcccCCCcccccCCce
Q psy1907 998 ADADFSTQWCYENFIQHRSMKRARDVREQLIGLVQRVEMELVSNPTETVNIRKAITAGYFYHIAKLSKSGSYKTAKHNQT 1077 (1320)
Q Consensus 998 ~~~~~~~~wC~~n~l~~~~l~~a~~ir~QL~~~l~r~~~~~~s~~~~~~~i~kal~aG~~~nvA~l~~~g~y~t~~~~~~ 1077 (1320)
..++++.+||++||+++++|++|+++|.||.+++.++++...++..+...|++|+.+|||+|+|++.++|+|+++++.+.
T Consensus 754 ~es~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~~~~~~~irk~i~aGff~h~a~l~~~g~y~tvk~~~t 833 (902)
T KOG0923|consen 754 KESKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSNQNDLDKIRKAITAGFFYHTAKLSKGGHYRTVKHPQT 833 (902)
T ss_pred hhcchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCChHHHHHHHHHHhccccccceeccCCCcceeeccCcc
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred EEECCCCCCCccCCcccchhhhhcchHhHhhheeeeChhchHhhcCCCcccccccccccccCcccccc
Q psy1907 1078 VMIHPNSSLFEELPRWVLYHELVFTTKEFMRQVTEIESKWLLEVAPHYYKPRELEDSTNKKMPKTLGK 1145 (1320)
Q Consensus 1078 v~iHPsS~l~~~~p~~vvy~elv~Tsk~y~r~vt~I~~~wLle~ap~~~~~k~~~~~~~kk~~~~~~~ 1145 (1320)
|++||.|++|...|.||+||++|+|+|+|||++++|.++||+++|||||+.+++++..++|||+..++
T Consensus 834 v~~hp~S~l~~~~P~wvvy~eLv~tske~mr~~~e~e~~Wlie~aphyyk~kdled~~~kk~~k~~g~ 901 (902)
T KOG0923|consen 834 VSIHPNSGLFEQLPRWVVYHELVLTSKEFMRQVIEIEEEWLIEVAPHYYKLKDLEDATNKKMPKKIGK 901 (902)
T ss_pred eeecCcccccccCCceEEEeehhcChHHHHHHHHhhhhhHHHHhchhhhhhhhccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988765
No 2
>KOG0924|consensus
Probab=100.00 E-value=1.7e-134 Score=1166.83 Aligned_cols=470 Identities=51% Similarity=0.908 Sum_probs=461.2
Q ss_pred hhhHHHHhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHH
Q psy1907 659 KLNIEETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEE 738 (1320)
Q Consensus 659 ~~~i~~~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e 738 (1320)
.++|.++|+.|||+.+|++||+.|++|||+||+||||||||||+|||||++||..+| .|+|||||||||||||+|||+|
T Consensus 345 ~k~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~G-mIGcTQPRRvAAiSVAkrVa~E 423 (1042)
T KOG0924|consen 345 KKSIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNG-MIGCTQPRRVAAISVAKRVAEE 423 (1042)
T ss_pred cchHHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCC-eeeecCchHHHHHHHHHHHHHH
Confidence 345999999999999999999999999999999999999999999999999999988 6999999999999999999999
Q ss_pred hCCCCCCeeeEEeecCccCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEcccccc-----------------------
Q psy1907 739 MGVKLGCEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPK----------------------- 795 (1320)
Q Consensus 739 ~~~~lG~~VGY~irfe~~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER----------------------- 795 (1320)
||+.+|.+|||+|||||+|+++|+|+|||||+||||.+.|..|.+|||||+||||||
T Consensus 424 M~~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKl 503 (1042)
T KOG0924|consen 424 MGVTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKL 503 (1042)
T ss_pred hCCccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceE
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 504 iVtSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i 583 (1042)
T KOG0924|consen 504 IVTSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDII 583 (1042)
T ss_pred EEeeccccHHHHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHH
Confidence
Q ss_pred -----------------------------------------------------------eEEEcCCccceeeccCCCCcc
Q psy1907 796 -----------------------------------------------------------VYVIDPGFCKQNNFNSRTGME 816 (1320)
Q Consensus 796 -----------------------------------------------------------~~ViD~G~~k~~~y~~~~~~~ 816 (1320)
.||||||++|.++|||+.||+
T Consensus 584 ~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D 663 (1042)
T KOG0924|consen 584 KEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMD 663 (1042)
T ss_pred HHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccc
Confidence 599999999999999999999
Q ss_pred eeEEEEecHhhHHHHhcccCCccCCeEEEecchHHhhhhccCCCchhhhccChHHHHHHHHHcCCCCcccccCCCCCChH
Q psy1907 817 SLTVVPISKASANQRAGRAGRVAAGKCFRLYTAWAYKHELEDNTVPEIQRINLGNAVLMLKALGINDLIHFDFLDPPPHE 896 (1320)
Q Consensus 817 ~L~~~~iSkasa~QR~GRAGR~~pG~cyrLyt~~~~~~~l~~~~~PEI~R~~L~~~vL~lk~lgi~d~~~f~fldpP~~~ 896 (1320)
.|+++|||||+|+||+|||||++||.||||||+.+|.++|-+.++|||||+||+++||+||++|++|+..|+||||||.+
T Consensus 664 ~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped 743 (1042)
T KOG0924|consen 664 ALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPED 743 (1042)
T ss_pred eeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccccCCCCCccccccccccccCChhhHHHHHhhhhccchHHHHHHHhhcccCCccccCChhHHHHHHHH
Q psy1907 897 TLVLALEQLYALGALNHHGDLTKLGRRMAEFPLDPMMGKMLLASEKYKCVEEIVTIASMLSVNGAIFYRPKDKIIHADTA 976 (1320)
Q Consensus 897 ~l~~Ale~L~~LgAld~~g~LT~lG~~ma~lPldP~laK~Ll~s~~~~c~~e~ltIaA~Lsv~~~~f~~p~~~~~~a~~~ 976 (1320)
.+..|+..|..||||+..|.||++|+.|++||+||.|+||||.|+.+||++|+++|++||||. .+|++|+++.++++.+
T Consensus 744 ~~~~sly~Lw~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp-~VF~rpker~eead~a 822 (1042)
T KOG0924|consen 744 NLLNSLYQLWTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVP-AVFYRPKEREEEADAA 822 (1042)
T ss_pred HHHHHHHHHHHhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhccc-ceeeccccchhhhhhH
Confidence 999999999999999999999999999999999999999999999999999999999999996 5999999999999999
Q ss_pred HhhhcccCCCHHHHHHHHHHHhhcccchhhHHhhccchhhHHHHHHHHHHHHHHHHhhhccccCCCccchHHHHHHHhcc
Q psy1907 977 RKNFFMLGGDHLVLLNIYNQWADADFSTQWCYENFIQHRSMKRARDVREQLIGLVQRVEMELVSNPTETVNIRKAITAGY 1056 (1320)
Q Consensus 977 r~~f~~~~gDhltllnvy~~w~~~~~~~~wC~~n~l~~~~l~~a~~ir~QL~~~l~r~~~~~~s~~~~~~~i~kal~aG~ 1056 (1320)
|.+|.+++|||||+||||++|..++++..||.+||++.++|++|+++|.||..+++.+++++.|+ .+++.|+||||+||
T Consensus 823 r~Kf~~~~sDhLTlLNVf~qw~~~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~-~dwdivrKCIcs~~ 901 (1042)
T KOG0924|consen 823 REKFQVPESDHLTLLNVFNQWRKNKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISS-DDWDIVRKCICSAY 901 (1042)
T ss_pred HhhhcCCCCchhhHHHHHHHHHhcCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccC-chHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 78999999999999
Q ss_pred ccchhhcccCCCcccccCCceEEECCCCCCCcc-CCcccchhhhhcchHhHhhheeeeChhchHhhcCCCcccccc
Q psy1907 1057 FYHIAKLSKSGSYKTAKHNQTVMIHPNSSLFEE-LPRWVLYHELVFTTKEFMRQVTEIESKWLLEVAPHYYKPREL 1131 (1320)
Q Consensus 1057 ~~nvA~l~~~g~y~t~~~~~~v~iHPsS~l~~~-~p~~vvy~elv~Tsk~y~r~vt~I~~~wLle~ap~~~~~k~~ 1131 (1320)
|+|+|++.+.|.|.++++|..+++||+|+|++. .|.||||||++.|+|+||++||.|+|+||.|++|-||..++.
T Consensus 902 fhn~Arlkg~g~YV~~~tg~~c~lHPsS~L~g~y~p~Yivyhel~~T~keym~cvT~v~~~wl~E~gp~~y~ik~~ 977 (1042)
T KOG0924|consen 902 FHNAARLKGIGEYVNLSTGIPCHLHPSSVLHGLYTPDYIVYHELLMTTKEYMQCVTSVSPEWLAELGPMFYSIKEA 977 (1042)
T ss_pred HHHHHHhccCceEEEccCCcceeecchHhhhcCCCCCeeeehHHHHhHHHHHHHHhhCCHHHHHHhCceeEecccc
Confidence 999999999999999999999999999999987 899999999999999999999999999999999999987753
No 3
>KOG0922|consensus
Probab=100.00 E-value=9.6e-134 Score=1182.81 Aligned_cols=471 Identities=57% Similarity=0.957 Sum_probs=458.5
Q ss_pred HhhhhhHHHHhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHH
Q psy1907 656 QKKKLNIEETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARV 735 (1320)
Q Consensus 656 ~~~~~~i~~~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rv 735 (1320)
.....+++++|++|||+++|++|+++|++|||+||+|||||||||||||||+|+||...|+ |+|||||||||+|||+||
T Consensus 37 ~~~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~-I~~TQPRRVAavslA~RV 115 (674)
T KOG0922|consen 37 KSTNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGK-IACTQPRRVAAVSLAKRV 115 (674)
T ss_pred cccccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCc-EEeecCchHHHHHHHHHH
Confidence 3566789999999999999999999999999999999999999999999999999999886 999999999999999999
Q ss_pred HHHhCCCCCCeeeEEeecCccCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEcccccc--------------------
Q psy1907 736 AEEMGVKLGCEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPK-------------------- 795 (1320)
Q Consensus 736 a~e~~~~lG~~VGY~irfe~~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER-------------------- 795 (1320)
|+|||+++|++|||+|||||++|++|+||||||||||||++.||.|++||||||||||||
T Consensus 116 AeE~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~ 195 (674)
T KOG0922|consen 116 AEEMGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPD 195 (674)
T ss_pred HHHhCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 196 LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~ 275 (674)
T KOG0922|consen 196 LKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAAC 275 (674)
T ss_pred ceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHH
Confidence
Q ss_pred ------------------------------------------------------------eEEEcCCccceeeccCCCCc
Q psy1907 796 ------------------------------------------------------------VYVIDPGFCKQNNFNSRTGM 815 (1320)
Q Consensus 796 ------------------------------------------------------------~~ViD~G~~k~~~y~~~~~~ 815 (1320)
+||||+||+|++.|||++||
T Consensus 276 ~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~ 355 (674)
T KOG0922|consen 276 ELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGL 355 (674)
T ss_pred HHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCc
Confidence 69999999999999999999
Q ss_pred ceeEEEEecHhhHHHHhcccCCccCCeEEEecchHHhhhhccCCCchhhhccChHHHHHHHHHcCCCCcccccCCCCCCh
Q psy1907 816 ESLTVVPISKASANQRAGRAGRVAAGKCFRLYTAWAYKHELEDNTVPEIQRINLGNAVLMLKALGINDLIHFDFLDPPPH 895 (1320)
Q Consensus 816 ~~L~~~~iSkasa~QR~GRAGR~~pG~cyrLyt~~~~~~~l~~~~~PEI~R~~L~~~vL~lk~lgi~d~~~f~fldpP~~ 895 (1320)
++|.++|||||||+||+|||||++||+||||||+.+| +.|+++++|||+|+||+.++|+||++|++|++.|||+|||+.
T Consensus 356 ~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~-~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F~f~d~P~~ 434 (674)
T KOG0922|consen 356 DSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY-DKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRFPFIDPPPP 434 (674)
T ss_pred cceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH-hhcccCCCCceeeechHHHHHHHHhcCCCCcccCCCCCCCCh
Confidence 9999999999999999999999999999999999999 679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccccCCCCCccc-cccccccccCChhhHHHHHhhhhccchHHHHHHHhhcccCCccccCChhHHHH-H
Q psy1907 896 ETLVLALEQLYALGALNHHGDLTK-LGRRMAEFPLDPMMGKMLLASEKYKCVEEIVTIASMLSVNGAIFYRPKDKIIH-A 973 (1320)
Q Consensus 896 ~~l~~Ale~L~~LgAld~~g~LT~-lG~~ma~lPldP~laK~Ll~s~~~~c~~e~ltIaA~Lsv~~~~f~~p~~~~~~-a 973 (1320)
+++..|++.|+.+||||++|.||. +|+.|++||++|.++|||+.|..+||++++++|+||||+++ +|++|.++..+ +
T Consensus 435 ~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~-~f~~p~~~~~~~a 513 (674)
T KOG0922|consen 435 EALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQS-VFSRPKDKKAEDA 513 (674)
T ss_pred HHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccc-eecCccchhhhhh
Confidence 999999999999999999999999 99999999999999999999999999999999999999985 89999998877 8
Q ss_pred HHHHhhhcccCCCHHHHHHHHHHHhhcccchhhHHhhccchhhHHHHHHHHHHHHHHHHhhhccccCCCccchHHHHHHH
Q psy1907 974 DTARKNFFMLGGDHLVLLNIYNQWADADFSTQWCYENFIQHRSMKRARDVREQLIGLVQRVEMELVSNPTETVNIRKAIT 1053 (1320)
Q Consensus 974 ~~~r~~f~~~~gDhltllnvy~~w~~~~~~~~wC~~n~l~~~~l~~a~~ir~QL~~~l~r~~~~~~s~~~~~~~i~kal~ 1053 (1320)
+..|.+|.+++|||+|+|++|+.|..++.+.+||.+||+|.++|++|.+||+||..++++.+++..++..+.+.|++||+
T Consensus 514 ~~~~~kf~~~eGDh~tlL~vy~~~~~~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s~~~d~~~i~k~l~ 593 (674)
T KOG0922|consen 514 DRKRAKFANPEGDHLTLLNVYESWKENGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSSCGGDMEKIRKCLC 593 (674)
T ss_pred hHHHHhhcCcccCHHHHHHHHHHHHhcCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999899889999999999
Q ss_pred hccccchhhcc-cCCCcccccCCceEEECCCCCCCccCCcccchhhhhcchHhHhhheeeeChhchHhhcCCCccccc
Q psy1907 1054 AGYFYHIAKLS-KSGSYKTAKHNQTVMIHPNSSLFEELPRWVLYHELVFTTKEFMRQVTEIESKWLLEVAPHYYKPRE 1130 (1320)
Q Consensus 1054 aG~~~nvA~l~-~~g~y~t~~~~~~v~iHPsS~l~~~~p~~vvy~elv~Tsk~y~r~vt~I~~~wLle~ap~~~~~k~ 1130 (1320)
+|||.|+|+++ ++| |+++.+|+.|+|||||+||...|+||+|||++.|+|.|||+|+.|+++||.++|||||+..+
T Consensus 594 aGff~N~A~~~~~~~-Yrti~~~~~v~IHPSS~l~~~~p~~viy~el~~Ttk~Y~r~Vt~i~~~wL~e~ap~~~~~~~ 670 (674)
T KOG0922|consen 594 AGFFRNVAERDYQDG-YRTIRGGQPVYIHPSSVLFRRKPEWVIYHELLQTTKEYMRNVTAIDPEWLLELAPHFFKQSD 670 (674)
T ss_pred HHHHHHHHHhhcCCC-eEEccCCcEEEEechHHhhcCCCCEEEEEEEeecchHhHhheeecCHHHHHHhCchHhhccc
Confidence 99999999997 666 99999999999999999999999999999999999999999999999999999999987543
No 4
>KOG0925|consensus
Probab=100.00 E-value=1.7e-127 Score=1079.35 Aligned_cols=476 Identities=50% Similarity=0.874 Sum_probs=457.2
Q ss_pred HHhhhhhHHHHhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHH
Q psy1907 655 KQKKKLNIEETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSAR 734 (1320)
Q Consensus 655 ~~~~~~~i~~~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~r 734 (1320)
...+++.|.+.|..||||.+|+++++.+.+||++|++||||||||||||||.++......+ -|+|||||||||||||+|
T Consensus 32 ~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~-~v~CTQprrvaamsva~R 110 (699)
T KOG0925|consen 32 YSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLT-GVACTQPRRVAAMSVAQR 110 (699)
T ss_pred CcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhcc-ceeecCchHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999999999999998766654 499999999999999999
Q ss_pred HHHHhCCCCCCeeeEEeecCccCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEcccccc-------------------
Q psy1907 735 VAEEMGVKLGCEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPK------------------- 795 (1320)
Q Consensus 735 va~e~~~~lG~~VGY~irfe~~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER------------------- 795 (1320)
||+||++.+|++|||+||||||++++|.++||||||||||.++||.|..|+|||+||||||
T Consensus 111 VadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rp 190 (699)
T KOG0925|consen 111 VADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRP 190 (699)
T ss_pred HHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 191 dLk~vvmSatl~a~Kfq~yf~n~Pll~vpg~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC 270 (699)
T KOG0925|consen 191 DLKLVVMSATLDAEKFQRYFGNAPLLAVPGTHPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDAC 270 (699)
T ss_pred CceEEEeecccchHHHHHHhCCCCeeecCCCCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------eEEEcCCccceeeccCCC
Q psy1907 796 --------------------------------------------------------------VYVIDPGFCKQNNFNSRT 813 (1320)
Q Consensus 796 --------------------------------------------------------------~~ViD~G~~k~~~y~~~~ 813 (1320)
+||||+||.|+|+|||+-
T Consensus 271 ~~i~re~~~L~~~~g~l~v~PLyP~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRI 350 (699)
T KOG0925|consen 271 RKISREVDNLGPQVGPLKVVPLYPAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRI 350 (699)
T ss_pred HHHHHHHHhhccccCCceEEecCchhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcce
Confidence 699999999999999999
Q ss_pred CcceeEEEEecHhhHHHHhcccCCccCCeEEEecchHHhhhhccCCCchhhhccChHHHHHHHHHcCCCCcccccCCCCC
Q psy1907 814 GMESLTVVPISKASANQRAGRAGRVAAGKCFRLYTAWAYKHELEDNTVPEIQRINLGNAVLMLKALGINDLIHFDFLDPP 893 (1320)
Q Consensus 814 ~~~~L~~~~iSkasa~QR~GRAGR~~pG~cyrLyt~~~~~~~l~~~~~PEI~R~~L~~~vL~lk~lgi~d~~~f~fldpP 893 (1320)
+.++|.+.|||||||.||+|||||+.||+||||||+++|..+|.+.+.|||+|+||+++||+||.+||+|+.+|||||||
T Consensus 351 Rvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhfdfmDpP 430 (699)
T KOG0925|consen 351 RVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHFDFMDPP 430 (699)
T ss_pred eeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccccCCCCCccccccccccccCChhhHHHHHhhhhccchHHHHHHHhhcccCCccccCCh-hHHHH
Q psy1907 894 PHETLVLALEQLYALGALNHHGDLTKLGRRMAEFPLDPMMGKMLLASEKYKCVEEIVTIASMLSVNGAIFYRPK-DKIIH 972 (1320)
Q Consensus 894 ~~~~l~~Ale~L~~LgAld~~g~LT~lG~~ma~lPldP~laK~Ll~s~~~~c~~e~ltIaA~Lsv~~~~f~~p~-~~~~~ 972 (1320)
.++++.+|+|.|..|+|||++|+||++|..|++||+||.++||||.|+.|+|++|+++|+||||+.+ .|.+|. ..+..
T Consensus 431 APEtLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPn-cFvRp~~~a~ka 509 (699)
T KOG0925|consen 431 APETLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPN-CFVRPTSSASKA 509 (699)
T ss_pred ChHHHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCc-cccCCChhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999975 899998 67788
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHhhcccchhhHHhhccchhhHHHHHHHHHHHHHHHHhhhccccCCC----ccchHH
Q psy1907 973 ADTARKNFFMLGGDHLVLLNIYNQWADADFSTQWCYENFIQHRSMKRARDVREQLIGLVQRVEMELVSNP----TETVNI 1048 (1320)
Q Consensus 973 a~~~r~~f~~~~gDhltllnvy~~w~~~~~~~~wC~~n~l~~~~l~~a~~ir~QL~~~l~r~~~~~~s~~----~~~~~i 1048 (1320)
|+.+++.|.+++|||+|++|||.+|++++...+||++||||+++|+.|.++|.||.++|+|+++++.+.. ....+|
T Consensus 510 Adeak~~faH~dGDHlTLlnVYhAfkq~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st~F~S~~y~~ni 589 (699)
T KOG0925|consen 510 ADEAKETFAHIDGDHLTLLNVYHAFKQNNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCSTDFGSRDYYVNI 589 (699)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHhcCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCCCCCChhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999877653 235789
Q ss_pred HHHHHhccccchhhcccCCCcccccCCceEEECCCCCCCccCCcccchhhhhcchHhHhhheeeeChhchHhhcCCCccc
Q psy1907 1049 RKAITAGYFYHIAKLSKSGSYKTAKHNQTVMIHPNSSLFEELPRWVLYHELVFTTKEFMRQVTEIESKWLLEVAPHYYKP 1128 (1320)
Q Consensus 1049 ~kal~aG~~~nvA~l~~~g~y~t~~~~~~v~iHPsS~l~~~~p~~vvy~elv~Tsk~y~r~vt~I~~~wLle~ap~~~~~ 1128 (1320)
+||+.+|||++||+...+|+|.|+++++.|++||++++- ..|+||+|+|.+.|+|+|||.||.|.|+||+++||+||.-
T Consensus 590 rKALvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhps~~l~-~~PeWVlyneFvlt~~N~ir~vt~I~pewlv~laP~Yydl 668 (699)
T KOG0925|consen 590 RKALVSGYFMQVAHLERGGHYLTVKDNQVVQLHPSTCLD-HKPEWVLYNEFVLTTKNFIRTVTDIRPEWLVELAPQYYDL 668 (699)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEecCceEEeccccccC-CCCCeEEEeeEEeeccceeeeecccCHHHHHHhchhhccc
Confidence 999999999999999888899999999999999999984 7799999999999999999999999999999999999976
Q ss_pred ccccc
Q psy1907 1129 RELED 1133 (1320)
Q Consensus 1129 k~~~~ 1133 (1320)
.++..
T Consensus 669 sNfp~ 673 (699)
T KOG0925|consen 669 SNFPP 673 (699)
T ss_pred ccCCc
Confidence 66644
No 5
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.3e-108 Score=1052.62 Aligned_cols=491 Identities=37% Similarity=0.592 Sum_probs=462.0
Q ss_pred HHHhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCC
Q psy1907 663 EETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVK 742 (1320)
Q Consensus 663 ~~~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~ 742 (1320)
.+.|.+|||+++|++|+++|++|+|+||+|+||||||||||||+++.|....+ +|+||||||+||+++|.|||+|+++.
T Consensus 67 ~~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g-~I~~TQPRRlAArsLA~RVA~El~~~ 145 (1294)
T PRK11131 67 ITYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKG-LIGHTQPRRLAARTVANRIAEELETE 145 (1294)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCC-ceeeCCCcHHHHHHHHHHHHHHHhhh
Confidence 35678999999999999999999999999999999999999999998865444 69999999999999999999999999
Q ss_pred CCCeeeEEeecCccCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEcccccc---------------------------
Q psy1907 743 LGCEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPK--------------------------- 795 (1320)
Q Consensus 743 lG~~VGY~irfe~~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER--------------------------- 795 (1320)
+|..|||+|||+++++++|+|+|||+|+||++++.||.|++|++|||||||||
T Consensus 146 lG~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmS 225 (1294)
T PRK11131 146 LGGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITS 225 (1294)
T ss_pred hcceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEee
Confidence 99999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 226 ATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~ 305 (1294)
T PRK11131 226 ATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADA 305 (1294)
T ss_pred CCCCHHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHH
Confidence
Q ss_pred ---------------------------------------------------eEEEcCCccceeeccCCCCcceeEEEEec
Q psy1907 796 ---------------------------------------------------VYVIDPGFCKQNNFNSRTGMESLTVVPIS 824 (1320)
Q Consensus 796 ---------------------------------------------------~~ViD~G~~k~~~y~~~~~~~~L~~~~iS 824 (1320)
+||||+|++|++.||+++|++.|.+.|||
T Consensus 306 L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iS 385 (1294)
T PRK11131 306 LNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPIS 385 (1294)
T ss_pred HHhcCCCcceEeecccCCCHHHHHHHhcccCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecC
Confidence 69999999999999999999999999999
Q ss_pred HhhHHHHhcccCCccCCeEEEecchHHhhhhccCCCchhhhccChHHHHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q psy1907 825 KASANQRAGRAGRVAAGKCFRLYTAWAYKHELEDNTVPEIQRINLGNAVLMLKALGINDLIHFDFLDPPPHETLVLALEQ 904 (1320)
Q Consensus 825 kasa~QR~GRAGR~~pG~cyrLyt~~~~~~~l~~~~~PEI~R~~L~~~vL~lk~lgi~d~~~f~fldpP~~~~l~~Ale~ 904 (1320)
|++|.||+|||||++||+||||||+..|. .+++++.|||+|+||+++||++|++|++|+..|+|+|||+.++|..|++.
T Consensus 386 kasa~QRaGRAGR~~~G~c~rLyte~d~~-~~~~~~~PEIlR~~L~~viL~lk~lgl~di~~F~fldpP~~~~i~~al~~ 464 (1294)
T PRK11131 386 QASANQRKGRCGRVSEGICIRLYSEDDFL-SRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 464 (1294)
T ss_pred HhhHhhhccccCCCCCcEEEEeCCHHHHH-hhhcccCCccccCCHHHHHHHHHHcCCCCcceeeCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999986 48999999999999999999999999999999999999999999999999
Q ss_pred HHHccccCCC-----CCccccccccccccCChhhHHHHHhhhhccchHHHHHHHhhcccCCccccCChhHHHHHHHHHhh
Q psy1907 905 LYALGALNHH-----GDLTKLGRRMAEFPLDPMMGKMLLASEKYKCVEEIVTIASMLSVNGAIFYRPKDKIIHADTARKN 979 (1320)
Q Consensus 905 L~~LgAld~~-----g~LT~lG~~ma~lPldP~laK~Ll~s~~~~c~~e~ltIaA~Lsv~~~~f~~p~~~~~~a~~~r~~ 979 (1320)
|+.+||||.+ ++||++|+.|+.||+||++||||+.|..+||++++++||||||+++ +|++|.++..+++.++++
T Consensus 465 L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~d-pf~~p~~~~~~a~~~~~~ 543 (1294)
T PRK11131 465 LEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQD-PRERPMDKQQASDEKHRR 543 (1294)
T ss_pred HHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCC-cccCCchhHHHHHHHHHh
Confidence 9999999854 5799999999999999999999999999999999999999999986 789999999999999999
Q ss_pred hcccCCCHHHHHHHHHHHhhcccchhhHHhhccchhhHHHHHHHHHHHHHHHHhhhccccCCCccchHHHHHHHhccccc
Q psy1907 980 FFMLGGDHLVLLNIYNQWADADFSTQWCYENFIQHRSMKRARDVREQLIGLVQRVEMELVSNPTETVNIRKAITAGYFYH 1059 (1320)
Q Consensus 980 f~~~~gDhltllnvy~~w~~~~~~~~wC~~n~l~~~~l~~a~~ir~QL~~~l~r~~~~~~s~~~~~~~i~kal~aG~~~n 1059 (1320)
|.++.|||++++|+|+.|.... +.
T Consensus 544 f~~~~sD~lt~ln~~~~~~~~~------------------------------------------------~~-------- 567 (1294)
T PRK11131 544 FADKESDFLAFVNLWNYLQEQQ------------------------------------------------KA-------- 567 (1294)
T ss_pred hCCCCCCHHHHHHHHHHHHHHH------------------------------------------------hh--------
Confidence 9999999999999998773110 00
Q ss_pred hhhcccCCCcccccCCceEEECCCCCCCccCCcccchhhhhcchHhHhhheeeeChhchHhhcCCCcccccccccccccC
Q psy1907 1060 IAKLSKSGSYKTAKHNQTVMIHPNSSLFEELPRWVLYHELVFTTKEFMRQVTEIESKWLLEVAPHYYKPRELEDSTNKKM 1139 (1320)
Q Consensus 1060 vA~l~~~g~y~t~~~~~~v~iHPsS~l~~~~p~~vvy~elv~Tsk~y~r~vt~I~~~wLle~ap~~~~~k~~~~~~~kk~ 1139 (1320)
.. +
T Consensus 568 ------------~s--------------~--------------------------------------------------- 570 (1294)
T PRK11131 568 ------------LS--------------S--------------------------------------------------- 570 (1294)
T ss_pred ------------hc--------------c---------------------------------------------------
Confidence 00 0
Q ss_pred ccccccccccccCCchhhHHHHHHhhhcCCChhhHhhhccChhhHHHHHHHHHHHHHHHHHhccccccCCcchHHHHHHH
Q psy1907 1140 PKTLGKSRAELGGDHLVLLNIYNQWADADFSTQWCYENFIQHRSMKRARDVREQLIGLVQRVEMELVSNPTETVNIRKAI 1219 (1320)
Q Consensus 1140 ~~~~~~~~~~leGdhltllnvy~~~~~~~~s~~wC~enfL~~r~l~~a~~ir~QL~~il~~~~l~~~s~~~~~~~irkal 1219 (1320)
+..++||++||||+++|++|.+||.||.++|.++|++.++++.+++.||+||
T Consensus 571 ----------------------------~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~~~~~~~~~i~~al 622 (1294)
T PRK11131 571 ----------------------------NQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHTAL 622 (1294)
T ss_pred ----------------------------hHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHH
Confidence 0013699999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhceeecCCC-CceeeecCcEEEEcCCCccccCCCCeEEEEEEEeecccchhhhcccchhhHHHhcCCccccccc
Q psy1907 1220 TAGYFYHIAKLSKSG-SYKTAKHNQTVMIHPNSSLFEELPRWVLYHELVFTTKEFMRQVTEIESKWLLEVAPHYYKPREL 1298 (1320)
Q Consensus 1220 ~sG~f~n~A~~~~~~-~Y~t~~~~~~v~ihPsS~l~~~~p~wvvy~elv~Tsk~y~r~vt~I~p~Wl~e~ap~~~~~~~~ 1298 (1320)
|+|||+|+|++++++ .|.+.+ +..|+|||||+||+++|+||||+|+|+|||.|||+|+.|+|+||.++|||||+.+++
T Consensus 623 l~G~~~nva~~~~~~~~y~~~~-~~~~~ihP~S~L~~~~p~wvv~~Elv~Tsr~y~r~va~I~p~Wl~~~a~~l~~~~y~ 701 (1294)
T PRK11131 623 LTGLLSHIGMKDAEKQEYTGAR-NARFSIFPGSGLFKKPPKWVMVAELVETSRLWGRIAARIEPEWIEPLAQHLIKRSYS 701 (1294)
T ss_pred HhhcHHHHeeccCCCCeEEccC-CcEEEEcCCccccCCCCCEEEEEeeeccChhhhhhhcccCHHHHHHHHHHhccccCC
Confidence 999999999998775 488877 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccchhhhhchhhhcc
Q psy1907 1299 EDSTNKKMPKTLGKSRAELG 1318 (1320)
Q Consensus 1299 ~~~~~~~~~~~~~~~~~~l~ 1318 (1320)
+|||+||.+.+++.++++||
T Consensus 702 ePhw~~~~g~v~a~e~vtl~ 721 (1294)
T PRK11131 702 EPHWEKAQGAVMATEKVTLY 721 (1294)
T ss_pred CCcccccCCeEEEEEEEEEc
Confidence 99999999999999999998
No 6
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=7.8e-102 Score=996.55 Aligned_cols=492 Identities=36% Similarity=0.580 Sum_probs=462.6
Q ss_pred HHHHhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCC
Q psy1907 662 IEETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGV 741 (1320)
Q Consensus 662 i~~~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~ 741 (1320)
+...+.+|||++++++|+++|++|+|+||+|+|||||||||||+|++.|+...+ +|+||||||+||+++|.|||+|+|+
T Consensus 59 ~~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~-~I~~tQPRRlAA~svA~RvA~elg~ 137 (1283)
T TIGR01967 59 EIRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHG-LIGHTQPRRLAARTVAQRIAEELGT 137 (1283)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCc-eEecCCccHHHHHHHHHHHHHHhCC
Confidence 455678999999999999999999999999999999999999999999876544 7999999999999999999999999
Q ss_pred CCCCeeeEEeecCccCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEcccccc--------------------------
Q psy1907 742 KLGCEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPK-------------------------- 795 (1320)
Q Consensus 742 ~lG~~VGY~irfe~~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER-------------------------- 795 (1320)
++|..|||+|||++++|++|+|+|||+|+||+++++||.|++|++|||||||||
T Consensus 138 ~lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlm 217 (1283)
T TIGR01967 138 PLGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIIT 217 (1283)
T ss_pred CcceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEE
Confidence 999999999999999999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 218 SATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~ 297 (1283)
T TIGR01967 218 SATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAE 297 (1283)
T ss_pred eCCcCHHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHH
Confidence
Q ss_pred ----------------------------------------------------eEEEcCCccceeeccCCCCcceeEEEEe
Q psy1907 796 ----------------------------------------------------VYVIDPGFCKQNNFNSRTGMESLTVVPI 823 (1320)
Q Consensus 796 ----------------------------------------------------~~ViD~G~~k~~~y~~~~~~~~L~~~~i 823 (1320)
+||||+|+.|.+.||+++|++.|.+.||
T Consensus 298 ~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~I 377 (1283)
T TIGR01967 298 ILRKRNLRHTEILPLYARLSNKEQQRVFQPHSGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPI 377 (1283)
T ss_pred HHHhcCCCCcEEEeccCCCCHHHHHHHhCCCCCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccC
Confidence 6999999999999999999999999999
Q ss_pred cHhhHHHHhcccCCccCCeEEEecchHHhhhhccCCCchhhhccChHHHHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q psy1907 824 SKASANQRAGRAGRVAAGKCFRLYTAWAYKHELEDNTVPEIQRINLGNAVLMLKALGINDLIHFDFLDPPPHETLVLALE 903 (1320)
Q Consensus 824 Skasa~QR~GRAGR~~pG~cyrLyt~~~~~~~l~~~~~PEI~R~~L~~~vL~lk~lgi~d~~~f~fldpP~~~~l~~Ale 903 (1320)
|||+|.||+|||||++||+||||||+..|.. +++++.|||+|+||++++|+++++|++++..|+|+|||+.++|..|++
T Consensus 378 Skasa~QRaGRAGR~~~G~cyRLyte~~~~~-~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f~fldpP~~~~i~~A~~ 456 (1283)
T TIGR01967 378 SQASANQRKGRCGRVAPGICIRLYSEEDFNS-RPEFTDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDPRAIRDGFR 456 (1283)
T ss_pred CHHHHHHHhhhhCCCCCceEEEecCHHHHHh-hhhccCcccccccHHHHHHHHHhcCCCCcccccCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999864 899999999999999999999999999999999999999999999999
Q ss_pred HHHHccccCCCC---CccccccccccccCChhhHHHHHhhhhccchHHHHHHHhhcccCCccccCChhHHHHHHHHHhhh
Q psy1907 904 QLYALGALNHHG---DLTKLGRRMAEFPLDPMMGKMLLASEKYKCVEEIVTIASMLSVNGAIFYRPKDKIIHADTARKNF 980 (1320)
Q Consensus 904 ~L~~LgAld~~g---~LT~lG~~ma~lPldP~laK~Ll~s~~~~c~~e~ltIaA~Lsv~~~~f~~p~~~~~~a~~~r~~f 980 (1320)
.|+.|||||++| +||++|+.|+.||+||++||||+.|..+||++++++|||+||+++ +|.+|.++...++.+++.|
T Consensus 457 ~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~d-p~~~p~~~~~~a~~~~~~f 535 (1283)
T TIGR01967 457 LLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQD-PRERPMEKQQAADQAHARF 535 (1283)
T ss_pred HHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCC-cCCCcchhHHHHHHHHHHh
Confidence 999999999998 799999999999999999999999999999999999999999986 6889999999999999999
Q ss_pred cccCCCHHHHHHHHHHHhhcccchhhHHhhccchhhHHHHHHHHHHHHHHHHhhhccccCCCccchHHHHHHHhccccch
Q psy1907 981 FMLGGDHLVLLNIYNQWADADFSTQWCYENFIQHRSMKRARDVREQLIGLVQRVEMELVSNPTETVNIRKAITAGYFYHI 1060 (1320)
Q Consensus 981 ~~~~gDhltllnvy~~w~~~~~~~~wC~~n~l~~~~l~~a~~ir~QL~~~l~r~~~~~~s~~~~~~~i~kal~aG~~~nv 1060 (1320)
..++|||++++|+|+.|.+.. . .
T Consensus 536 ~~~~sD~l~~L~~~~~~~~~~-----------------------------------------~-------~--------- 558 (1283)
T TIGR01967 536 KDPRSDFLSRVNLWRHIEEQR-----------------------------------------Q-------A--------- 558 (1283)
T ss_pred cCCCCCHHHHHHHHHHHHHhh-----------------------------------------h-------h---------
Confidence 999999999999998873210 0 0
Q ss_pred hhcccCCCcccccCCceEEECCCCCCCccCCcccchhhhhcchHhHhhheeeeChhchHhhcCCCcccccccccccccCc
Q psy1907 1061 AKLSKSGSYKTAKHNQTVMIHPNSSLFEELPRWVLYHELVFTTKEFMRQVTEIESKWLLEVAPHYYKPRELEDSTNKKMP 1140 (1320)
Q Consensus 1061 A~l~~~g~y~t~~~~~~v~iHPsS~l~~~~p~~vvy~elv~Tsk~y~r~vt~I~~~wLle~ap~~~~~k~~~~~~~kk~~ 1140 (1320)
.++
T Consensus 559 ----~~~------------------------------------------------------------------------- 561 (1283)
T TIGR01967 559 ----LSA------------------------------------------------------------------------- 561 (1283)
T ss_pred ----ccc-------------------------------------------------------------------------
Confidence 000
Q ss_pred cccccccccccCCchhhHHHHHHhhhcCCChhhHhhhccChhhHHHHHHHHHHHHHHHHHhccccccCCcchHHHHHHHH
Q psy1907 1141 KTLGKSRAELGGDHLVLLNIYNQWADADFSTQWCYENFIQHRSMKRARDVREQLIGLVQRVEMELVSNPTETVNIRKAIT 1220 (1320)
Q Consensus 1141 ~~~~~~~~~leGdhltllnvy~~~~~~~~s~~wC~enfL~~r~l~~a~~ir~QL~~il~~~~l~~~s~~~~~~~irkal~ 1220 (1320)
+...+||++||||+++|++|.++++||..++.+++++..+++.+++.|++||+
T Consensus 562 ---------------------------~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~~~~~~~~~~i~~~l~ 614 (1283)
T TIGR01967 562 ---------------------------NQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLNEEPADYDAIHKALL 614 (1283)
T ss_pred ---------------------------hHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCcCCCCccHHHHHHHHH
Confidence 00146999999999999999999999999999999998888888889999999
Q ss_pred hhhhhhceeecCCCCceeeecCcEEEEcCCCccccCCCCeEEEEEEEeecccchhhhcccchhhHHHhcCCcccccccCC
Q psy1907 1221 AGYFYHIAKLSKSGSYKTAKHNQTVMIHPNSSLFEELPRWVLYHELVFTTKEFMRQVTEIESKWLLEVAPHYYKPRELED 1300 (1320)
Q Consensus 1221 sG~f~n~A~~~~~~~Y~t~~~~~~v~ihPsS~l~~~~p~wvvy~elv~Tsk~y~r~vt~I~p~Wl~e~ap~~~~~~~~~~ 1300 (1320)
+|||.|+|++.+++.|++.. |+.++|||+|+|++++|+||||+|+|.|++.|||+|+.|+|+||.++|||+++..+.++
T Consensus 615 ~g~~~~iA~~~~~~~y~~~~-g~~~~ihP~S~L~~~~p~wvv~~elv~t~~~~ir~~a~I~p~wl~~~~~~~~~~~~~~~ 693 (1283)
T TIGR01967 615 SGLLSQIGMKDEKHEYDGAR-GRKFHIFPGSPLFKKPPKWVMAAELVETSKLYARLVAKIEPEWVEPVAGHLIKKNYFEP 693 (1283)
T ss_pred HhhHHHHheeCCCCcEEecC-CcEEEECCCccccCCCCCEEEEeeecccchheEeeeccCCHHHHHHHhHHHhEeccCce
Confidence 99999999988888899988 88999999999999899999999999999999999999999999999999999999999
Q ss_pred Cccccchhhhhchhhhcc
Q psy1907 1301 STNKKMPKTLGKSRAELG 1318 (1320)
Q Consensus 1301 ~~~~~~~~~~~~~~~~l~ 1318 (1320)
+|+++.+.+++.++++++
T Consensus 694 ~w~~~~g~v~a~~~~~~~ 711 (1283)
T TIGR01967 694 HWEKKRGQVMAYEKVTLY 711 (1283)
T ss_pred eeccCCCeEEEEEehhhc
Confidence 999999999999888664
No 7
>KOG0926|consensus
Probab=100.00 E-value=3.1e-101 Score=903.08 Aligned_cols=472 Identities=40% Similarity=0.641 Sum_probs=428.4
Q ss_pred hhhhhHHHHhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCC----CcEEEEecccHHHHHHHH
Q psy1907 657 KKKLNIEETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKD----KMKIGCTQPRRVAAMSVS 732 (1320)
Q Consensus 657 ~~~~~i~~~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~----~~~I~~tQPRRvAA~svA 732 (1320)
.+..+||+.|..|||....++|+++|..|.||||+|+|||||||||||||||+||... +++|++||||||||++.|
T Consensus 243 ~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamA 322 (1172)
T KOG0926|consen 243 SRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMA 322 (1172)
T ss_pred cCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHH
Confidence 4667999999999999999999999999999999999999999999999999999876 678999999999999999
Q ss_pred HHHHHHhCCCCCCeeeEEeecCccCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEcccccc-----------------
Q psy1907 733 ARVAEEMGVKLGCEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPK----------------- 795 (1320)
Q Consensus 733 ~rva~e~~~~lG~~VGY~irfe~~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER----------------- 795 (1320)
+|||.|+|. +|.+|||+||||...++.|+|+|||||+||||+++|-.|..||+|||||||||
T Consensus 323 kRVa~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~L 401 (1172)
T KOG0926|consen 323 KRVAFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPL 401 (1172)
T ss_pred HHHHHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHH
Confidence 999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 402 R~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~ 481 (1172)
T KOG0926|consen 402 RQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPP 481 (1172)
T ss_pred HHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~ 561 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGF 561 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 562 ~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAE 641 (1172)
T KOG0926|consen 562 ASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAE 641 (1172)
T ss_pred hhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchh
Confidence
Q ss_pred --------eEEEcCCccceeeccCCCCcceeEEEEecHhhHHHHhcccCCccCCeEEEecchHHhhhhccCCCchhhhcc
Q psy1907 796 --------VYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGRAGRVAAGKCFRLYTAWAYKHELEDNTVPEIQRI 867 (1320)
Q Consensus 796 --------~~ViD~G~~k~~~y~~~~~~~~L~~~~iSkasa~QR~GRAGR~~pG~cyrLyt~~~~~~~l~~~~~PEI~R~ 867 (1320)
.||||||++|.+.||..+|++++.|.|||||||+||||||||++||+|||||+...|.+.++.+..|||++.
T Consensus 642 TSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~ 721 (1172)
T KOG0926|consen 642 TSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKK 721 (1172)
T ss_pred cccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhccHHHhhC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccccCCCCCccccccccccccCChhhHHHHHhhhhccchH
Q psy1907 868 NLGNAVLMLKALGINDLIHFDFLDPPPHETLVLALEQLYALGALNHHGDLTKLGRRMAEFPLDPMMGKMLLASEKYKCVE 947 (1320)
Q Consensus 868 ~L~~~vL~lk~lgi~d~~~f~fldpP~~~~l~~Ale~L~~LgAld~~g~LT~lG~~ma~lPldP~laK~Ll~s~~~~c~~ 947 (1320)
|.+++||++|+|+|+++.+|||.+||.+.+|+.|...|..|||||.+|.||+||+.|+.||+.|+++|||+.+.+.+|..
T Consensus 722 Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lp 801 (1172)
T KOG0926|consen 722 PVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLP 801 (1172)
T ss_pred cHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCccc------cCC-------hh------------------HHHHHHHHHhhhcccCCCHHHHHHHHHH
Q psy1907 948 EIVTIASMLSVNGAIF------YRP-------KD------------------KIIHADTARKNFFMLGGDHLVLLNIYNQ 996 (1320)
Q Consensus 948 e~ltIaA~Lsv~~~~f------~~p-------~~------------------~~~~a~~~r~~f~~~~gDhltllnvy~~ 996 (1320)
-++.++++||++.++. ++| .+ .+.....++.+|...++|.|+++.+..+
T Consensus 802 y~i~lvsaLsv~e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~sd~l~Ll~Av~a 881 (1172)
T KOG0926|consen 802 YNIALVSALSVYEVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSNLDSDALVLLSAVSA 881 (1172)
T ss_pred HHHHHHHHHhccchhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhccCCccHHHHHHHHHH
Confidence 9999999999975321 111 11 0011223456677778999999999988
Q ss_pred HhhcccchhhHHhhccchhhHHHHHHHHHHHHHHHHhhhc-------cccCCC-cc--chHHHHHHHhccccchhhcccC
Q psy1907 997 WADADFSTQWCYENFIQHRSMKRARDVREQLIGLVQRVEM-------ELVSNP-TE--TVNIRKAITAGYFYHIAKLSKS 1066 (1320)
Q Consensus 997 w~~~~~~~~wC~~n~l~~~~l~~a~~ir~QL~~~l~r~~~-------~~~s~~-~~--~~~i~kal~aG~~~nvA~l~~~ 1066 (1320)
+....+...||..|||..++|.+++++|.||.+++++..+ ++...+ .+ ...+++.|||||.++||+..+-
T Consensus 882 ~ey~~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i~Ag~~DrVArk~~~ 961 (1172)
T KOG0926|consen 882 AEYAENGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMICAGFADRVARKVDA 961 (1172)
T ss_pred HHhhhhcchhHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8777777789999999999999999999999999875433 222222 22 3468889999999999996554
Q ss_pred CCcccccCCceEEECCCCCCCccCCcccchhhhhcchHhHh-hheeeeChhchHhhcCCCcccc
Q psy1907 1067 GSYKTAKHNQTVMIHPNSSLFEELPRWVLYHELVFTTKEFM-RQVTEIESKWLLEVAPHYYKPR 1129 (1320)
Q Consensus 1067 g~y~t~~~~~~v~iHPsS~l~~~~p~~vvy~elv~Tsk~y~-r~vt~I~~~wLle~ap~~~~~k 1129 (1320)
-.|....-+.+|+|||+|+|+...|+||+|.+++.|...|| +.++.|+|+||+..++.|....
T Consensus 962 ~~y~~~~i~~~~fl~~~svl~~~ape~viY~el~~~~~~~~~~~v~~v~pewl~~~~~slcn~~ 1025 (1172)
T KOG0926|consen 962 TEYDAAKIQEPVFLHRWSVLINSAPELVIYQELLLTNRPYMHGGVTAVRPEWLLNHAKSLCNFS 1025 (1172)
T ss_pred cccchhhhcCceeeeehhhhhccCccceehhhhhhcCCcccccceEEEchHHHHhhhhhhcccc
Confidence 55888888899999999999999999999999999988775 5599999999999998766433
No 8
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-97 Score=926.99 Aligned_cols=466 Identities=42% Similarity=0.648 Sum_probs=425.7
Q ss_pred HhhhhhHHHHhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHH
Q psy1907 656 QKKKLNIEETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARV 735 (1320)
Q Consensus 656 ~~~~~~i~~~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rv 735 (1320)
..+...+.+.|..|||++.+++|+++|++|+|+||+|||||||||||||||+|+|+..+ ++|+|||||||||+|+|+||
T Consensus 36 ~~~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~-g~I~~tQPRRlAArsvA~Rv 114 (845)
T COG1643 36 SANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIA-GKIGCTQPRRLAARSVAERV 114 (845)
T ss_pred ccccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccC-CeEEecCchHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999544 47999999999999999999
Q ss_pred HHHhCCCCCCeeeEEeecCccCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEcccccc--------------------
Q psy1907 736 AEEMGVKLGCEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPK-------------------- 795 (1320)
Q Consensus 736 a~e~~~~lG~~VGY~irfe~~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER-------------------- 795 (1320)
|+|||+++|++|||+||||+++|++|+|+||||||||||+++||.|++||+|||||||||
T Consensus 115 Aeel~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~ 194 (845)
T COG1643 115 AEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRD 194 (845)
T ss_pred HHHhCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 195 DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~ 274 (845)
T COG1643 195 DLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIER 274 (845)
T ss_pred CceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHH
Confidence
Q ss_pred ----------------------------------------------------------eEEEcCCccceeeccCCCCcce
Q psy1907 796 ----------------------------------------------------------VYVIDPGFCKQNNFNSRTGMES 817 (1320)
Q Consensus 796 ----------------------------------------------------------~~ViD~G~~k~~~y~~~~~~~~ 817 (1320)
+||||+|++|++.||+++|+++
T Consensus 275 ~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~ 354 (845)
T COG1643 275 TAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTR 354 (845)
T ss_pred HHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCcee
Confidence 6999999999999999999999
Q ss_pred eEEEEecHhhHHHHhcccCCccCCeEEEecchHHhhhhccCCCchhhhccChHHHHHHHHHcCCC-CcccccCCCCCChH
Q psy1907 818 LTVVPISKASANQRAGRAGRVAAGKCFRLYTAWAYKHELEDNTVPEIQRINLGNAVLMLKALGIN-DLIHFDFLDPPPHE 896 (1320)
Q Consensus 818 L~~~~iSkasa~QR~GRAGR~~pG~cyrLyt~~~~~~~l~~~~~PEI~R~~L~~~vL~lk~lgi~-d~~~f~fldpP~~~ 896 (1320)
|.++|||||||+||+|||||++||+|||||+++.|. .|++++.|||+|+||++++|+|++||++ |+..|+|+|||+..
T Consensus 355 L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~-~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fld~P~~~ 433 (845)
T COG1643 355 LETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL-AFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEA 433 (845)
T ss_pred eeEEEechhhhhhhccccccCCCceEEEecCHHHHH-hcccCCChhhhhcchHHHHHHHHhcCCCCCcccCccCCCCChH
Confidence 999999999999999999999999999999999998 7999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHHHHHccccCCCCCccccccccccccCChhhHHHHHhhhhccchHHHHHHHhhcccCC--ccccCChhHHH---
Q psy1907 897 TLVLALEQLYALGALNHHGDLTKLGRRMAEFPLDPMMGKMLLASEKYKCVEEIVTIASMLSVNG--AIFYRPKDKII--- 971 (1320)
Q Consensus 897 ~l~~Ale~L~~LgAld~~g~LT~lG~~ma~lPldP~laK~Ll~s~~~~c~~e~ltIaA~Lsv~~--~~f~~p~~~~~--- 971 (1320)
++..|++.|+.|||||++|.||++|+.|+.||+||++|+||+.+..+||++++++|+||||+++ +.|+++.+...
T Consensus 434 ~i~~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~ 513 (845)
T COG1643 434 AIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRT 513 (845)
T ss_pred HHHHHHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987 14777665544
Q ss_pred HHHHHH-hhhcc---cCCCHHHHHHHHHHHhhcc------cchhhHHhhccchhhHHHHHHHHHHHHHHHHh-hhccccC
Q psy1907 972 HADTAR-KNFFM---LGGDHLVLLNIYNQWADAD------FSTQWCYENFIQHRSMKRARDVREQLIGLVQR-VEMELVS 1040 (1320)
Q Consensus 972 ~a~~~r-~~f~~---~~gDhltllnvy~~w~~~~------~~~~wC~~n~l~~~~l~~a~~ir~QL~~~l~r-~~~~~~s 1040 (1320)
..+.++ ..+.+ +.+||++++++|..|.... ...+||..++++.++|.++..++.|+...+.+ .+..+..
T Consensus 514 ~~~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~~~~~ 593 (845)
T COG1643 514 AQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAA 593 (845)
T ss_pred HHHHHHHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccccchhhh
Confidence 444443 34444 6799999999999998876 56789999999999999999999998877766 3332222
Q ss_pred CCc------------------cchHHHHHHHhccccchhhcccCCC-cccccCCceEEECCCC-CCCccCCcccchhhhh
Q psy1907 1041 NPT------------------ETVNIRKAITAGYFYHIAKLSKSGS-YKTAKHNQTVMIHPNS-SLFEELPRWVLYHELV 1100 (1320)
Q Consensus 1041 ~~~------------------~~~~i~kal~aG~~~nvA~l~~~g~-y~t~~~~~~v~iHPsS-~l~~~~p~~vvy~elv 1100 (1320)
... .++.+.+++++|++.|++++...+. |.+...+..+.+||+| ......++|++|++.+
T Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~ 673 (845)
T COG1643 594 AEIDEDEWAAQHLPEHCYSEPIWDDIRGALAAGRKLNIAQLQLDGRPYVTLSDNTPVFAHPSSVRLGLVLLEWIKYAEFL 673 (845)
T ss_pred cccCcchhhhhhhhhhhccchhHHHHhhhhhhheecceeeeeccccccccCCCCceeEecchhHhhcccCcchHHHHHHH
Confidence 111 2467899999999999999887665 8999889999999999 6667788999999999
Q ss_pred cchHhHhh-----------heeeeChhchHhhcC
Q psy1907 1101 FTTKEFMR-----------QVTEIESKWLLEVAP 1123 (1320)
Q Consensus 1101 ~Tsk~y~r-----------~vt~I~~~wLle~ap 1123 (1320)
.|++.|++ .++++-..||.+..+
T Consensus 674 ~~~~~~~~~~~~~~~~~~~~l~~~~~~wL~~~~~ 707 (845)
T COG1643 674 RTRKGYLREGRGERWPDVQTLIELLKLWLKEQVK 707 (845)
T ss_pred HHHHHHHhhcccccCcccchHhhhHHHhhhhhcc
Confidence 99999999 588888999998876
No 9
>KOG0920|consensus
Probab=100.00 E-value=9e-92 Score=868.28 Aligned_cols=514 Identities=32% Similarity=0.548 Sum_probs=448.5
Q ss_pred HhhhhhHHHHhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCC-CcEEEEecccHHHHHHHHHH
Q psy1907 656 QKKKLNIEETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKD-KMKIGCTQPRRVAAMSVSAR 734 (1320)
Q Consensus 656 ~~~~~~i~~~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~-~~~I~~tQPRRvAA~svA~r 734 (1320)
..++.++++.|++||+|++|++||++|++|||+||+|||||||||||||||+|..+..+ .++|+||||||+||+|||+|
T Consensus 159 s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeR 238 (924)
T KOG0920|consen 159 SESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAER 238 (924)
T ss_pred hhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999765544 57899999999999999999
Q ss_pred HHHHhCCCCCCeeeEEeecCccCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEcccccc-------------------
Q psy1907 735 VAEEMGVKLGCEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPK------------------- 795 (1320)
Q Consensus 735 va~e~~~~lG~~VGY~irfe~~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER------------------- 795 (1320)
||.|+|+.+|.+|||+||.++..+..|+|.|||+|+|||.|++||.|.+++|||+||||||
T Consensus 239 Va~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p 318 (924)
T KOG0920|consen 239 VAKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP 318 (924)
T ss_pred HHHHhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 319 ~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 398 (924)
T KOG0920|consen 319 DLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYD 398 (924)
T ss_pred CceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 399 Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTN 478 (924)
T KOG0920|consen 399 LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATN 478 (924)
T ss_pred HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhh
Confidence
Q ss_pred -----------eEEEcCCccceeeccCCCCcceeEEEEecHhhHHHHhcccCCccCCeEEEecchHHhhhhccCCCchhh
Q psy1907 796 -----------VYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGRAGRVAAGKCFRLYTAWAYKHELEDNTVPEI 864 (1320)
Q Consensus 796 -----------~~ViD~G~~k~~~y~~~~~~~~L~~~~iSkasa~QR~GRAGR~~pG~cyrLyt~~~~~~~l~~~~~PEI 864 (1320)
+||||+|++|++.|||.+++++|..+|||||+|.||+|||||+++|+|||||++..|+..+.++++|||
T Consensus 479 IAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEi 558 (924)
T KOG0920|consen 479 IAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEI 558 (924)
T ss_pred hHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhhhhcccccCChHH
Confidence 699999999999999999999999999999999999999999999999999999999887777999999
Q ss_pred hccChHHHHHHHHHcCCCCcccc--cCCCCCChHHHHHHHHHHHHccccCCCCCccccccccccccCChhhHHHHHhhhh
Q psy1907 865 QRINLGNAVLMLKALGINDLIHF--DFLDPPPHETLVLALEQLYALGALNHHGDLTKLGRRMAEFPLDPMMGKMLLASEK 942 (1320)
Q Consensus 865 ~R~~L~~~vL~lk~lgi~d~~~f--~fldpP~~~~l~~Ale~L~~LgAld~~g~LT~lG~~ma~lPldP~laK~Ll~s~~ 942 (1320)
+|++|.++||++|.++.+++..| ..||||+.+++..|++.|..+|||+.+.+||+||+.|+.||+||++||||+.|.+
T Consensus 559 lR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ll~g~i 638 (924)
T KOG0920|consen 559 LRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGAI 638 (924)
T ss_pred HhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHHhCCCccccchhheehhh
Confidence 99999999999999999998876 5789999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHhhcccCCccccCChhHHHHHHHHHhhhccc-CCCHHHHHHHHHHHhhcc-----cchhhHHhhccchhh
Q psy1907 943 YKCVEEIVTIASMLSVNGAIFYRPKDKIIHADTARKNFFML-GGDHLVLLNIYNQWADAD-----FSTQWCYENFIQHRS 1016 (1320)
Q Consensus 943 ~~c~~e~ltIaA~Lsv~~~~f~~p~~~~~~a~~~r~~f~~~-~gDhltllnvy~~w~~~~-----~~~~wC~~n~l~~~~ 1016 (1320)
|+|++++++|||+|+..+ +|+.|.++...++.+++.|... .||||+++++|+.|.+.. ....||.+|||+..+
T Consensus 639 f~cLdp~l~iaa~Ls~k~-PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w~~~~~~~~~~~~~fc~~~fLs~~~ 717 (924)
T KOG0920|consen 639 FGCLDPALTIAAALSFKS-PFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGWREILRSGPSAEKDFCEENFLSSNT 717 (924)
T ss_pred ccccchhhhHHHHhccCC-CcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHhhccHHH
Confidence 999999999999999875 7999999999999999888755 489999999999998743 346899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccC------------CCccchHHHHHHHhccccchhhccc---CC---CcccccCCceE
Q psy1907 1017 MKRARDVREQLIGLVQRVEMELVS------------NPTETVNIRKAITAGYFYHIAKLSK---SG---SYKTAKHNQTV 1078 (1320)
Q Consensus 1017 l~~a~~ir~QL~~~l~r~~~~~~s------------~~~~~~~i~kal~aG~~~nvA~l~~---~g---~y~t~~~~~~v 1078 (1320)
|+++.++|.|+...+.++++-..+ +..+.+.++.+|++|+++|+|+... .. .|.+ +....|
T Consensus 718 l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~i~~~~~~~~~~~~~~~~~-~~~~~v 796 (924)
T KOG0920|consen 718 LQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPNIAFVRRMEPKSKSVTFVT-KADGRV 796 (924)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCceeeeecccCCcCcceeec-CCceeE
Confidence 999999999999999888764322 1234567889999999999998653 21 1222 233589
Q ss_pred EECCCCCCCcc---CCcccchhhhhcchH-hHhhheeeeChhchHhhcCCCcccccccccccccCccccccccccccCCc
Q psy1907 1079 MIHPNSSLFEE---LPRWVLYHELVFTTK-EFMRQVTEIESKWLLEVAPHYYKPRELEDSTNKKMPKTLGKSRAELGGDH 1154 (1320)
Q Consensus 1079 ~iHPsS~l~~~---~p~~vvy~elv~Tsk-~y~r~vt~I~~~wLle~ap~~~~~k~~~~~~~kk~~~~~~~~~~~leGdh 1154 (1320)
+|||+|+.+.. ..+|++|++.+.|++ .|+|++|.+.+.-++.++...+.. ...+.+
T Consensus 797 ~i~~~sv~~~~~~~~~p~l~~~~k~~t~~~~~~rd~T~v~~~~~llfgg~~~~~--------------------~~~~~~ 856 (924)
T KOG0920|consen 797 IIHPSSVNEQSTGFQSPFLVFPEKVKSTRLVSLRDTTSVSSSALLLFGGGISTV--------------------RMKSGS 856 (924)
T ss_pred EEecchhhccccccCCcceEEeeecccCCcceeeecCCCCcHHheeecCCceee--------------------cCCCCc
Confidence 99999998753 224999999999999 999999999997777765533321 111222
Q ss_pred hhhHHHHHHhhhcCCChhhHhhhccChhhHHHHHHHHHHHHHHHHHhccccc
Q psy1907 1155 LVLLNIYNQWADADFSTQWCYENFIQHRSMKRARDVREQLIGLVQRVEMELV 1206 (1320)
Q Consensus 1155 ltllnvy~~~~~~~~s~~wC~enfL~~r~l~~a~~ir~QL~~il~~~~l~~~ 1206 (1320)
+++ -|-++|+.+.+..+...+..-|+..++.+--+..
T Consensus 857 ~~~---------------~~~d~~~~~~~~~~~~~~~~~Lr~~l~~~l~~~~ 893 (924)
T KOG0920|consen 857 LAL---------------LLPDGWLRFKALPKTARLLKELRRELDSLLSKKI 893 (924)
T ss_pred cce---------------ecCCceEEeecchhHHHHHHHHHHHHHHHHHHhc
Confidence 322 2347777777776666666666666665544433
No 10
>KOG0923|consensus
Probab=100.00 E-value=4.9e-79 Score=707.27 Aligned_cols=346 Identities=60% Similarity=0.893 Sum_probs=320.2
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhcCCCCEEEeCCc
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFFDDAPVFRIPGR 80 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~~~~vi~i~g~ 80 (1320)
||||||||+++.+|.|++||||||||||||+++||+|+|++|+|.+.||++|++++|||+|+++|+.||+++||+.+||+
T Consensus 361 MTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT~DAekFS~fFDdapIF~iPGR 440 (902)
T KOG0923|consen 361 MTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATMDAEKFSAFFDDAPIFRIPGR 440 (902)
T ss_pred ecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeeccccCHHHHHHhccCCcEEeccCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHH
Q psy1907 81 RFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDM 160 (1320)
Q Consensus 81 ~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~ 160 (1320)
.|||+++|.+.|+.||+++++.+|++||.+++.||||||++|+++|+.+.+.|.++++.|+....++.++|+|++||++.
T Consensus 441 RyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPsel 520 (902)
T KOG0923|consen 441 RYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSEL 520 (902)
T ss_pred ccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCc
Q psy1907 161 QTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDF 240 (1320)
Q Consensus 161 r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~f 240 (1320)
|.+||++.|+|.||||+||||||+|||||||.||||+||+|+++|+|++||++|.+.|||++++.||+|||||+|||
T Consensus 521 QakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPG--- 597 (902)
T KOG0923|consen 521 QAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPG--- 597 (902)
T ss_pred HHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCHHHHhh-cccccCCccccCCcchhhhhhccccccccccccccccccceecccccccccchhhhhhcCCChhh
Q psy1907 241 RGCAHVLGEEVLRG-CAHVLGEEVLRPEVSQPFRSFGYLGVMQDCRYIGTYLVGFIWHWKNHYIQDQTLVTFMLTHLPTT 319 (1320)
Q Consensus 241 g~~~~L~~~~~~~~-l~~~~~pei~~~~l~~~~L~~~~l~~~~~~~~~~~~~~~~il~~~~l~~~d~~~f~~~~~p~~~~ 319 (1320)
.||+||+...|.. +.....|||++.+| .+++|.+++|||.|+.+|+||+|||+++
T Consensus 598 -KCfRLYt~~aY~~eLE~~t~PEIqRtnL-----------------------~nvVL~LkSLGI~Dl~~FdFmDpPp~et 653 (902)
T KOG0923|consen 598 -KCFRLYTAWAYEHELEEMTVPEIQRTNL-----------------------GNVVLLLKSLGIHDLIHFDFLDPPPTET 653 (902)
T ss_pred -ceEEeechhhhhhhhccCCCcceeeccc-----------------------hhHHHHHHhcCcchhcccccCCCCChHH
Confidence 6999999877764 44455578776665 4677888899999999999999999999
Q ss_pred hhhhccccccc------------cccccccccCchhhhhhcc-cccchhHHHHHhhccccccccceeeeccCCCCCCccc
Q psy1907 320 YIKRKSSEYKV------------GNGEDSFCVSPLYNLTIQS-SSFQSITIQCFASLQLHHPVIQLFTILPSSSTSSRLF 386 (1320)
Q Consensus 320 ~~~~~~~L~~l------------G~~~~~~~v~p~~~~~l~~-~~~~~l~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~ 386 (1320)
++.++++|+.| |++|++||+||+++|+|++ ..+.| -.++++|++|||.+.+++
T Consensus 654 L~~aLE~LyaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~c--------------s~EiitiaamlS~~~svf 719 (902)
T KOG0923|consen 654 LLKALEQLYALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKC--------------SEEIITIAAMLSVGASVF 719 (902)
T ss_pred HHHHHHHHHHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccc--------------hHHHHHHHHHHhcCchhe
Confidence 99999998665 7899999999999999874 43443 145566666666666555
Q ss_pred c
Q psy1907 387 T 387 (1320)
Q Consensus 387 ~ 387 (1320)
.
T Consensus 720 y 720 (902)
T KOG0923|consen 720 Y 720 (902)
T ss_pred e
Confidence 3
No 11
>KOG0922|consensus
Probab=100.00 E-value=2.7e-75 Score=687.90 Aligned_cols=343 Identities=48% Similarity=0.739 Sum_probs=319.8
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhcCCCCEEEeCCc
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFFDDAPVFRIPGR 80 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~~~~vi~i~g~ 80 (1320)
||||+|||+++.||+|++|++|||||||||+++||+|+|+||.+++.|+++|+|+||||+|+++|++||+++|++.|+||
T Consensus 146 mTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATlda~kfS~yF~~a~i~~i~GR 225 (674)
T KOG0922|consen 146 MTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFNNAPILTIPGR 225 (674)
T ss_pred ecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeeeecHHHHHHHhcCCceEeecCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHH
Q psy1907 81 RFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDM 160 (1320)
Q Consensus 81 ~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~ 160 (1320)
+|||+++|++.|..||+++++.++++||.++++|||||||+|++|||.+++.|.+.++.++.+.+. .++|+||+||.++
T Consensus 226 ~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~-~~lply~aL~~e~ 304 (674)
T KOG0922|consen 226 TFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPE-LILPLYGALPSEE 304 (674)
T ss_pred CCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcc-eeeeecccCCHHH
Confidence 999999999999999999999999999999999999999999999999999999998888887777 8999999999999
Q ss_pred HHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCc
Q psy1907 161 QTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDF 240 (1320)
Q Consensus 161 r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~f 240 (1320)
|.++|.+.|.|.||||+||||||+|||||||.||||+|++|.+.|||++|++.|.+.|||++++.||+|||||+|||
T Consensus 305 Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pG--- 381 (674)
T KOG0922|consen 305 QSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPG--- 381 (674)
T ss_pred hhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eEEEEecCHHHHhhcccccCCccccCCcchhhhhhccccccccccccccccccceecccccccccchhhhhhcCCChhhh
Q psy1907 241 RGCAHVLGEEVLRGCAHVLGEEVLRPEVSQPFRSFGYLGVMQDCRYIGTYLVGFIWHWKNHYIQDQTLVTFMLTHLPTTY 320 (1320)
Q Consensus 241 g~~~~L~~~~~~~~l~~~~~pei~~~~l~~~~L~~~~l~~~~~~~~~~~~~~~~il~~~~l~~~d~~~f~~~~~p~~~~~ 320 (1320)
.|||||++++|+.+++...|||.+++|+..+ |++|++|++|++.|+|+.||+++.+
T Consensus 382 -kcyRLYte~~~~~~~~~~~PEI~R~~Ls~~v-----------------------L~Lkalgi~d~l~F~f~d~P~~~~l 437 (674)
T KOG0922|consen 382 -KCYRLYTESAYDKMPLQTVPEIQRVNLSSAV-----------------------LQLKALGINDPLRFPFIDPPPPEAL 437 (674)
T ss_pred -eEEEeeeHHHHhhcccCCCCceeeechHHHH-----------------------HHHHhcCCCCcccCCCCCCCChHHH
Confidence 7999999999999999999999999886554 5555666678899999999999999
Q ss_pred hhhccccccc-------------cccccccccCchhhhhhc-ccccchhHHHHHhhccccccccceeeeccCCCCCCcc
Q psy1907 321 IKRKSSEYKV-------------GNGEDSFCVSPLYNLTIQ-SSSFQSITIQCFASLQLHHPVIQLFTILPSSSTSSRL 385 (1320)
Q Consensus 321 ~~~~~~L~~l-------------G~~~~~~~v~p~~~~~l~-~~~~~~l~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~ 385 (1320)
+.|++.|+.| |..|+++|++|.++++|+ +.+++|. +++++|++|||+.+.+
T Consensus 438 ~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~--------------~e~l~i~a~Lsv~~~f 502 (674)
T KOG0922|consen 438 EEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCS--------------EEILTIAAMLSVQSVF 502 (674)
T ss_pred HHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCc--------------chhhhheeeeecccee
Confidence 9999998655 677889999999999965 7777773 4456777777755443
No 12
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.5e-72 Score=722.96 Aligned_cols=319 Identities=32% Similarity=0.524 Sum_probs=281.6
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhcCCCCEEEeCCc
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFFDDAPVFRIPGR 80 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~~~~vi~i~g~ 80 (1320)
||||+|++++..++.|++|++|||||||||++++||++++++.+...++++|+|+||||++.+.|++||+++|++.++|+
T Consensus 169 ~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSATid~e~fs~~F~~apvI~V~Gr 248 (1294)
T PRK11131 169 MTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSRHFNNAPIIEVSGR 248 (1294)
T ss_pred EChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeCCCCHHHHHHHcCCCCEEEEcCc
Confidence 79999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred ccceeEEEEcCCc------cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecC
Q psy1907 81 RFPVDIYYTKAPE------ADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYS 154 (1320)
Q Consensus 81 ~~pV~~~y~~~~~------~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~ 154 (1320)
.+||+++|..... .+++..++..+..++ ..++|+|||||||+++|+.+++.|.+. +.+.+.+++|||
T Consensus 249 ~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L~~~------~~~~~~VlpLhg 321 (1294)
T PRK11131 249 TYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGDILIFMSGEREIRDTADALNKL------NLRHTEILPLYA 321 (1294)
T ss_pred cccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHhc------CCCcceEeeccc
Confidence 9999999987543 345666666655554 455799999999999999999999863 224567999999
Q ss_pred CCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCC
Q psy1907 155 NLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGF 234 (1320)
Q Consensus 155 ~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~ 234 (1320)
+|++++|.++|++ .|.++|||||||||||||||+|+||||+|+.+.+.||+++|++.+...|+|+++|.||+|||||.
T Consensus 322 ~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~ 399 (1294)
T PRK11131 322 RLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV 399 (1294)
T ss_pred CCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC
Confidence 9999999999986 47899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEecCHHHHhhcccccCCccccCCcchhhhhhccccccccccccccccccceecccccccccchhhhhhcC
Q psy1907 235 NPLSDFRGCAHVLGEEVLRGCAHVLGEEVLRPEVSQPFRSFGYLGVMQDCRYIGTYLVGFIWHWKNHYIQDQTLVTFMLT 314 (1320)
Q Consensus 235 g~g~~fg~~~~L~~~~~~~~l~~~~~pei~~~~l~~~~L~~~~l~~~~~~~~~~~~~~~~il~~~~l~~~d~~~f~~~~~ 314 (1320)
++| .||+||++++|..++++..|||++.+|... ||+++++|+.|+..|.|+.|
T Consensus 400 ~~G----~c~rLyte~d~~~~~~~~~PEIlR~~L~~v-----------------------iL~lk~lgl~di~~F~fldp 452 (1294)
T PRK11131 400 SEG----ICIRLYSEDDFLSRPEFTDPEILRTNLASV-----------------------ILQMTALGLGDIAAFPFVEA 452 (1294)
T ss_pred CCc----EEEEeCCHHHHHhhhcccCCccccCCHHHH-----------------------HHHHHHcCCCCcceeeCCCC
Confidence 987 899999999999999999999999888654 45555666677888999999
Q ss_pred CChhhhhhhcc-----------------ccccccccccccccCchhhhhhc-ccccchh
Q psy1907 315 HLPTTYIKRKS-----------------SEYKVGNGEDSFCVSPLYNLTIQ-SSSFQSI 355 (1320)
Q Consensus 315 p~~~~~~~~~~-----------------~L~~lG~~~~~~~v~p~~~~~l~-~~~~~~l 355 (1320)
|++..+.++++ .||.||+.|+.|||||.+|++|+ +..|+|+
T Consensus 453 P~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~ 511 (1294)
T PRK11131 453 PDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCV 511 (1294)
T ss_pred CCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCH
Confidence 99887443333 36777888889999999999966 6677773
No 13
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.2e-72 Score=710.54 Aligned_cols=426 Identities=29% Similarity=0.429 Sum_probs=366.5
Q ss_pred CCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeee
Q psy1907 669 LPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVG 748 (1320)
Q Consensus 669 LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VG 748 (1320)
|||++++++|+++|++|+++||+|+||||||||+||+|++... .+++|+||||||+||+++|+|||+++|+.+|..||
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 8999999999999999999999999999999999999998764 34579999999999999999999999999999999
Q ss_pred EEeecCccCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEcccccc---------------------------------
Q psy1907 749 YAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPK--------------------------------- 795 (1320)
Q Consensus 749 Y~irfe~~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER--------------------------------- 795 (1320)
|.|||+++++.+|+|+|||+|+|+|++++||.|++|++|||||||||
T Consensus 79 y~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~ 158 (819)
T TIGR01970 79 YRVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDG 158 (819)
T ss_pred EEEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCH
Confidence 99999999999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 159 ~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~ 238 (819)
T TIGR01970 159 ERLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDSDVL 238 (819)
T ss_pred HHHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCCCcE
Confidence
Q ss_pred -------------------------------------------eEEEcCCccceeeccCCCCcceeEEEEecHhhHHHHh
Q psy1907 796 -------------------------------------------VYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRA 832 (1320)
Q Consensus 796 -------------------------------------------~~ViD~G~~k~~~y~~~~~~~~L~~~~iSkasa~QR~ 832 (1320)
+||||+|+.|.+.|||.+|++.|.++|||||||.||+
T Consensus 239 v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~ 318 (819)
T TIGR01970 239 ICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRA 318 (819)
T ss_pred EEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhh
Confidence 6999999999999999999999999999999999999
Q ss_pred cccCCccCCeEEEecchHHhhhhccCCCchhhhccChHHHHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccccC
Q psy1907 833 GRAGRVAAGKCFRLYTAWAYKHELEDNTVPEIQRINLGNAVLMLKALGINDLIHFDFLDPPPHETLVLALEQLYALGALN 912 (1320)
Q Consensus 833 GRAGR~~pG~cyrLyt~~~~~~~l~~~~~PEI~R~~L~~~vL~lk~lgi~d~~~f~fldpP~~~~l~~Ale~L~~LgAld 912 (1320)
|||||++||+||||||++.|. .|++++.|||+|+||++++|+++++|++|+..|+|+||||.+++..|++.|+.|||||
T Consensus 319 GRAGR~~~G~cyrL~t~~~~~-~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~~P~~~~i~~a~~~L~~lgald 397 (819)
T TIGR01970 319 GRAGRLEPGVCYRLWSEEQHQ-RLPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAARQLLQRLGALD 397 (819)
T ss_pred hhcCCCCCCEEEEeCCHHHHH-hhhcCCCcceeccCcHHHHHHHHHcCCCChhhCCCCCCcCHHHHHHHHHHHHHCCCCC
Confidence 999999999999999999885 5999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccccccCChhhHHHHHhhhhccchHHHHHHHhhcccCCccccCChhHHHHHHHHHhhhcccCCCHHHHHH
Q psy1907 913 HHGDLTKLGRRMAEFPLDPMMGKMLLASEKYKCVEEIVTIASMLSVNGAIFYRPKDKIIHADTARKNFFMLGGDHLVLLN 992 (1320)
Q Consensus 913 ~~g~LT~lG~~ma~lPldP~laK~Ll~s~~~~c~~e~ltIaA~Lsv~~~~f~~p~~~~~~a~~~r~~f~~~~gDhltlln 992 (1320)
++|+||++|+.|+.||+||++||||+.|..+||.+++++|||+||+++. +-. .++|....+.
T Consensus 398 ~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~-~~~-----------------~~~d~~~~~~ 459 (819)
T TIGR01970 398 AQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGL-PRQ-----------------GGADLMNRLH 459 (819)
T ss_pred CCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCC-CCC-----------------CcccHHHHHH
Confidence 9999999999999999999999999999999999999999999999762 110 1368766666
Q ss_pred HHHHHhhcccchhhHHhhccchhhHHHHHHHHHHHHHHHHhhhcc-ccCCCccchHHHHHHHhccccchhhcccC-CCcc
Q psy1907 993 IYNQWADADFSTQWCYENFIQHRSMKRARDVREQLIGLVQRVEME-LVSNPTETVNIRKAITAGYFYHIAKLSKS-GSYK 1070 (1320)
Q Consensus 993 vy~~w~~~~~~~~wC~~n~l~~~~l~~a~~ir~QL~~~l~r~~~~-~~s~~~~~~~i~kal~aG~~~nvA~l~~~-g~y~ 1070 (1320)
.++.. ....| ..+.++.+|+...+ +.. ..........+..+++.||+++||+...+ |.|.
T Consensus 460 ~~~~~-----~~~~~----------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~lla~a~pdria~~r~~~~~y~ 521 (819)
T TIGR01970 460 RLQQG-----RQGRG----------QRAQQLAKKLRRRL---RFSQADSGAIASHALGLLLALAFPDRIAKRRGQPGRYQ 521 (819)
T ss_pred HHhhc-----chhhH----------HHHHHHHHHHHHHh---CcCcCCCcccccchHhHHHhhhChHhheeccCCCCeEE
Confidence 55421 01111 22334445554332 111 00011111126668899999999986543 5686
Q ss_pred cccCCceEEECCCCCCCccCCcccchhhhhcch---HhHhhheeeeChhchHhhcCCCcccccccccccc
Q psy1907 1071 TAKHNQTVMIHPNSSLFEELPRWVLYHELVFTT---KEFMRQVTEIESKWLLEVAPHYYKPRELEDSTNK 1137 (1320)
Q Consensus 1071 t~~~~~~v~iHPsS~l~~~~p~~vvy~elv~Ts---k~y~r~vt~I~~~wLle~ap~~~~~k~~~~~~~k 1137 (1320)
+.+|+.+.++|.|+|++. +|++..++..++ ...++.+++|+++|+.+.+++.+...+ ...|+.
T Consensus 522 -l~~G~~~~l~~~~~l~~~--~~l~~a~~~~~~~~~~~~i~~a~~i~~~~~~~~~~~~~~~~~-~~~wd~ 587 (819)
T TIGR01970 522 -LANGRGAVLSAEDALARE--PWLVAADLGEGQGKTAARILLAAPVDEALLRQVLPDLVVQVD-QVDWDE 587 (819)
T ss_pred -CCCCCeeEeCCCCcccCC--CeEEEEEeeccCCccccceeeeccCCHHHHHHHhHHHceEEE-EEEEec
Confidence 568999999999999886 899999997442 356889999999999999998876554 334443
No 14
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.9e-71 Score=705.21 Aligned_cols=410 Identities=29% Similarity=0.452 Sum_probs=357.1
Q ss_pred cCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCee
Q psy1907 668 SLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEV 747 (1320)
Q Consensus 668 ~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~V 747 (1320)
+|||++++++|+++|++|+++||+|+||||||||+|+++++.+... ++|+|+||||+||+++|+|||+++|+++|..|
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~--~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGIN--GKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcC--CeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 5999999999999999999999999999999999999999986543 37999999999999999999999999999999
Q ss_pred eEEeecCccCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEcccccc--------------------------------
Q psy1907 748 GYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPK-------------------------------- 795 (1320)
Q Consensus 748 GY~irfe~~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER-------------------------------- 795 (1320)
||.||++++.+++|+|+|+|+|+|+|+++.||.|++|++|||||||||
T Consensus 81 Gy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~ 160 (812)
T PRK11664 81 GYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD 160 (812)
T ss_pred EEEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCC
Confidence 999999999999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 161 ~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~ 240 (812)
T PRK11664 161 NDRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVASDV 240 (812)
T ss_pred HHHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccCCc
Confidence
Q ss_pred --------------------------------------------eEEEcCCccceeeccCCCCcceeEEEEecHhhHHHH
Q psy1907 796 --------------------------------------------VYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQR 831 (1320)
Q Consensus 796 --------------------------------------------~~ViD~G~~k~~~y~~~~~~~~L~~~~iSkasa~QR 831 (1320)
+||||+|+.|.+.|||.+|++.|.++|||||+|.||
T Consensus 241 ~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR 320 (812)
T PRK11664 241 LLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQR 320 (812)
T ss_pred eEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhh
Confidence 699999999999999999999999999999999999
Q ss_pred hcccCCccCCeEEEecchHHhhhhccCCCchhhhccChHHHHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcccc
Q psy1907 832 AGRAGRVAAGKCFRLYTAWAYKHELEDNTVPEIQRINLGNAVLMLKALGINDLIHFDFLDPPPHETLVLALEQLYALGAL 911 (1320)
Q Consensus 832 ~GRAGR~~pG~cyrLyt~~~~~~~l~~~~~PEI~R~~L~~~vL~lk~lgi~d~~~f~fldpP~~~~l~~Ale~L~~LgAl 911 (1320)
+|||||++||+||||||+..|. .|++++.|||+|++|++++|.++++|+.++..|+|+||||.+++..|++.|+.+|||
T Consensus 321 ~GRaGR~~~G~cyrL~t~~~~~-~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~~~L~~lgal 399 (812)
T PRK11664 321 AGRAGRLEPGICLHLYSKEQAE-RAAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAKRLLQQLGAL 399 (812)
T ss_pred ccccCCCCCcEEEEecCHHHHh-hCccCCCCceeccchHHHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999985 599999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccccccCChhhHHHHHhhhhccchH--HHHHHHhhcccCCccccCChhHHHHHHHHHhhhcccCCCHHH
Q psy1907 912 NHHGDLTKLGRRMAEFPLDPMMGKMLLASEKYKCVE--EIVTIASMLSVNGAIFYRPKDKIIHADTARKNFFMLGGDHLV 989 (1320)
Q Consensus 912 d~~g~LT~lG~~ma~lPldP~laK~Ll~s~~~~c~~--e~ltIaA~Lsv~~~~f~~p~~~~~~a~~~r~~f~~~~gDhlt 989 (1320)
|++|+||++|+.|+.||+||++||||+.|..+||.. .++.|+|+|+..+ .. .++|...
T Consensus 400 d~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~~------~~--------------~~~d~~~ 459 (812)
T PRK11664 400 DGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEPP------RS--------------GSSDLGV 459 (812)
T ss_pred CCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccCC------CC--------------CcccHHH
Confidence 999999999999999999999999999999998653 5677777776542 10 0245433
Q ss_pred HHHHHHHHhhcccchhhHHhhccchhhHHHHHHHHHHHHHHHHhhhccccCCCccchHHHHHHHhccccchhhcccC-CC
Q psy1907 990 LLNIYNQWADADFSTQWCYENFIQHRSMKRARDVREQLIGLVQRVEMELVSNPTETVNIRKAITAGYFYHIAKLSKS-GS 1068 (1320)
Q Consensus 990 llnvy~~w~~~~~~~~wC~~n~l~~~~l~~a~~ir~QL~~~l~r~~~~~~s~~~~~~~i~kal~aG~~~nvA~l~~~-g~ 1068 (1320)
.+..+. ..| +..+..+.+|+.... + ..+.+.+.+++++||+++||++.++ |.
T Consensus 460 ~l~~~~--------~~~----------~~~~~~~~~~~~~~~---~------~~~~~~~~~~la~aypdriA~~r~~~~~ 512 (812)
T PRK11664 460 ALSRKQ--------PHW----------QQRAQQLLKRLNVRG---G------EADSSLIAPLLALAFPDRIARRRGQDGR 512 (812)
T ss_pred HHHHHH--------HHH----------HHHHHHHHHHHHhhc---c------cCChHHHHHHHHHHCHHHHhhhcCCCCe
Confidence 333221 123 233444555553311 1 1123358889999999999997544 44
Q ss_pred cccccCCceEEECCCCCCCccCCcccchhhhhcch-H--hHhhheeeeChhchHhhcCCCccccc
Q psy1907 1069 YKTAKHNQTVMIHPNSSLFEELPRWVLYHELVFTT-K--EFMRQVTEIESKWLLEVAPHYYKPRE 1130 (1320)
Q Consensus 1069 y~t~~~~~~v~iHPsS~l~~~~p~~vvy~elv~Ts-k--~y~r~vt~I~~~wLle~ap~~~~~k~ 1130 (1320)
|. +.+|+.+.+||+|+|++. +|+++++++.++ + ..|+.+++|+++||.+++|+++..++
T Consensus 513 ~~-l~~G~~a~l~~~~~l~~~--~~lv~a~~~~~~~~~~~ri~~a~~l~~~~l~~~~~~~~~~~~ 574 (812)
T PRK11664 513 YQ-LANGMGAMLDADDALSRH--EWLIAPLLLQGSASPDARILLALPLDIDELVQRCPQLVQQSD 574 (812)
T ss_pred EE-eeCCCeEEECCCCcccCC--CeEEEEEhhccCccccceeeEeeccCHHHHHHHHHHhceeee
Confidence 65 679999999999999875 899999997664 3 35779999999999999999887653
No 15
>KOG0924|consensus
Probab=100.00 E-value=2.5e-69 Score=625.79 Aligned_cols=341 Identities=42% Similarity=0.681 Sum_probs=312.8
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhcCCCCEEEeCCc
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFFDDAPVFRIPGR 80 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~~~~vi~i~g~ 80 (1320)
||+|+|||+.+.|..|.+|++||+||||||++++|+++|++|.++..|.|+|+|++|||+|+++|++||||||.+.|+|+
T Consensus 451 mTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~p~f~IpGR 530 (1042)
T KOG0924|consen 451 MTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCPQFTIPGR 530 (1042)
T ss_pred eccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCCceeeecCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCC-CCCeEEEEecCCCCHH
Q psy1907 81 RFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSK-IKELIILPVYSNLPTD 159 (1320)
Q Consensus 81 ~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~-~~~~~v~~LH~~l~~~ 159 (1320)
+|||++.|.+.|..||+++++...++||...++|+||||++|+++||-.+..+.+.+.++... ...+.|+|+|+.||++
T Consensus 531 TyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~d 610 (1042)
T KOG0924|consen 531 TYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPAD 610 (1042)
T ss_pred ccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchh
Confidence 999999999999999999999999999999999999999999999999999999888766532 2489999999999999
Q ss_pred HHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCC
Q psy1907 160 MQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSD 239 (1320)
Q Consensus 160 ~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~ 239 (1320)
.|.++|++.+.|.|||||||||||+|||||||.||||+|++|.++||++.|+++|...|||++++.||+|||||+|||
T Consensus 611 lQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG-- 688 (1042)
T KOG0924|consen 611 LQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPG-- 688 (1042)
T ss_pred hhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ceEEEEecCHHHHh-hcccccCCccccCCcchhhhhhccccccccccccccccccceecccccccccchhhhhhcCCChh
Q psy1907 240 FRGCAHVLGEEVLR-GCAHVLGEEVLRPEVSQPFRSFGYLGVMQDCRYIGTYLVGFIWHWKNHYIQDQTLVTFMLTHLPT 318 (1320)
Q Consensus 240 fg~~~~L~~~~~~~-~l~~~~~pei~~~~l~~~~L~~~~l~~~~~~~~~~~~~~~~il~~~~l~~~d~~~f~~~~~p~~~ 318 (1320)
+||++||+..|. .+.+...|||++.+|. +++|.+++||++|+..|+|++|||.+
T Consensus 689 --~cYRlYTe~ay~~eml~stvPEIqRTNl~-----------------------nvVLlLkslgV~dll~FdFmD~Pped 743 (1042)
T KOG0924|consen 689 --TCYRLYTEDAYKNEMLPSTVPEIQRTNLS-----------------------NVVLLLKSLGVDDLLKFDFMDPPPED 743 (1042)
T ss_pred --ceeeehhhhHHHhhcccCCCchhhhcchh-----------------------hHHHHHHhcChhhhhCCCcCCCCHHH
Confidence 899999997764 6777777887776664 56667777888899999999999999
Q ss_pred hhhhhc------------cccccccccccccccCchhhhhhc-ccccchhHHHHHhhccccccccceeeeccCCCCC
Q psy1907 319 TYIKRK------------SSEYKVGNGEDSFCVSPLYNLTIQ-SSSFQSITIQCFASLQLHHPVIQLFTILPSSSTS 382 (1320)
Q Consensus 319 ~~~~~~------------~~L~~lG~~~~~~~v~p~~~~~l~-~~~~~~l~~~~~~~~~~~~p~~~~~~i~~~~~~~ 382 (1320)
.++.++ +.||.||+.|.+||+||.++|+|+ +..++| .+++++||+|||+-
T Consensus 744 ~~~~sly~Lw~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc--------------~dEilsIvSmLSvp 806 (1042)
T KOG0924|consen 744 NLLNSLYQLWTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGC--------------SDEILSIVSMLSVP 806 (1042)
T ss_pred HHHHHHHHHHHhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCc--------------HHHHHHHHHHhccc
Confidence 755554 455888999999999999999954 676666 35567888887654
No 16
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.1e-67 Score=675.50 Aligned_cols=319 Identities=34% Similarity=0.560 Sum_probs=280.6
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhcCCCCEEEeCCc
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFFDDAPVFRIPGR 80 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~~~~vi~i~g~ 80 (1320)
||||+|++++..|+.|++|++|||||||||++++|+++++++.+...++++|+|+||||++.+.|++||+++|++.++|+
T Consensus 162 ~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSATld~~~fa~~F~~apvI~V~Gr 241 (1283)
T TIGR01967 162 MTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGR 241 (1283)
T ss_pred ccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCCcCHHHHHHHhcCCCEEEECCC
Confidence 79999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred ccceeEEEEcCCc------cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecC
Q psy1907 81 RFPVDIYYTKAPE------ADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYS 154 (1320)
Q Consensus 81 ~~pV~~~y~~~~~------~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~ 154 (1320)
.|||+++|...+. .++.+..+..+..++.. .+|+|||||||+.+|+.+++.|.+.. .+++.++||||
T Consensus 242 ~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~-~~GdILVFLpg~~EI~~l~~~L~~~~------~~~~~VlpLhg 314 (1283)
T TIGR01967 242 TYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAE-GPGDILIFLPGEREIRDAAEILRKRN------LRHTEILPLYA 314 (1283)
T ss_pred cccceeEEecccccccchhhhHHHHHHHHHHHHHhh-CCCCEEEeCCCHHHHHHHHHHHHhcC------CCCcEEEeccC
Confidence 9999999976432 24566666666666544 57999999999999999999998641 24678999999
Q ss_pred CCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCC
Q psy1907 155 NLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGF 234 (1320)
Q Consensus 155 ~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~ 234 (1320)
+|++++|.++|.++ +.+||||||||||+|||||||+||||+|+++.+.||+++|+..|...|||+++|.||+|||||.
T Consensus 315 ~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~ 392 (1283)
T TIGR01967 315 RLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV 392 (1283)
T ss_pred CCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCC
Confidence 99999999999876 3589999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEecCHHHHhhcccccCCccccCCcchhhhhhccccccccccccccccccceecccccccccchhhhhhcC
Q psy1907 235 NPLSDFRGCAHVLGEEVLRGCAHVLGEEVLRPEVSQPFRSFGYLGVMQDCRYIGTYLVGFIWHWKNHYIQDQTLVTFMLT 314 (1320)
Q Consensus 235 g~g~~fg~~~~L~~~~~~~~l~~~~~pei~~~~l~~~~L~~~~l~~~~~~~~~~~~~~~~il~~~~l~~~d~~~f~~~~~ 314 (1320)
++| .||+||++++|..++++..|||++.+|+..+ |+++++|+.|+..|.|+.|
T Consensus 393 ~~G----~cyRLyte~~~~~~~~~~~PEIlR~~L~~vi-----------------------L~l~~lg~~di~~f~fldp 445 (1283)
T TIGR01967 393 APG----ICIRLYSEEDFNSRPEFTDPEILRTNLASVI-----------------------LQMLALRLGDIAAFPFIEA 445 (1283)
T ss_pred CCc----eEEEecCHHHHHhhhhccCcccccccHHHHH-----------------------HHHHhcCCCCcccccCCCC
Confidence 998 8999999999999999999999998876554 4555556667788999999
Q ss_pred CChhhhhhh------------cc---ccccccccccccccCchhhhhhc-ccccchh
Q psy1907 315 HLPTTYIKR------------KS---SEYKVGNGEDSFCVSPLYNLTIQ-SSSFQSI 355 (1320)
Q Consensus 315 p~~~~~~~~------------~~---~L~~lG~~~~~~~v~p~~~~~l~-~~~~~~l 355 (1320)
|++..+.++ .+ .||.+|+.|+.+|++|.+|++|+ +..++|+
T Consensus 446 P~~~~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl 502 (1283)
T TIGR01967 446 PDPRAIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCL 502 (1283)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCH
Confidence 998763333 33 46778888999999999999976 5666664
No 17
>KOG0925|consensus
Probab=100.00 E-value=6.6e-68 Score=597.52 Aligned_cols=330 Identities=45% Similarity=0.701 Sum_probs=305.3
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhcCCCCEEEeCCc
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFFDDAPVFRIPGR 80 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~~~~vi~i~g~ 80 (1320)
||||||||+++++|.|.+|++|||||||||++.||+|+|++|++...|+|+|+|+||||+++.+|..||+|+|++.|+|
T Consensus 142 ~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg- 220 (699)
T KOG0925|consen 142 CTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLLAVPG- 220 (699)
T ss_pred hcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCCCeeecCC-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHH
Q psy1907 81 RFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDM 160 (1320)
Q Consensus 81 ~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~ 160 (1320)
++||+++|+..++.||+++++.+|++||..+++||||||++|.++|+.+|+.+.....+++++...+.|+||| +.+
T Consensus 221 ~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~ 296 (699)
T KOG0925|consen 221 THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQ 296 (699)
T ss_pred CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chh
Confidence 9999999999999999999999999999999999999999999999999999998888899999999999999 667
Q ss_pred HHHHcCCCCCC-----CeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCC
Q psy1907 161 QTKIFLPTPPN-----ARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFN 235 (1320)
Q Consensus 161 r~~i~~~~~~g-----~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g 235 (1320)
|.++|++.+.. .|||||+|||||++++|++|.||||.||.++++||||.+++++.+.|||++++.||+|||||+.
T Consensus 297 qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~ 376 (699)
T KOG0925|consen 297 QQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 376 (699)
T ss_pred hccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCC
Confidence 78899988643 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEecCHHHHh-hcccccCCccccCCcchhhhhhccccccccccccccccccceecccccccccchhhhhhcC
Q psy1907 236 PLSDFRGCAHVLGEEVLR-GCAHVLGEEVLRPEVSQPFRSFGYLGVMQDCRYIGTYLVGFIWHWKNHYIQDQTLVTFMLT 314 (1320)
Q Consensus 236 ~g~~fg~~~~L~~~~~~~-~l~~~~~pei~~~~l~~~~L~~~~l~~~~~~~~~~~~~~~~il~~~~l~~~d~~~f~~~~~ 314 (1320)
|| .||+||+++.|. .+.+...|||++++|+ +++|.+|.+||+|+..|+||++
T Consensus 377 pG----kcfrLYte~~~~~em~~~typeilrsNL~-----------------------s~VL~LKklgI~dlvhfdfmDp 429 (699)
T KOG0925|consen 377 PG----KCFRLYTEEAFEKEMQPQTYPEILRSNLS-----------------------STVLQLKKLGIDDLVHFDFMDP 429 (699)
T ss_pred CC----ceEEeecHHhhhhcCCCCCcHHHHHHhhH-----------------------HHHHHHHhcCcccccCCcCCCC
Confidence 99 588999999886 4677777887777664 5666777777889999999999
Q ss_pred CChhhhhhhcccc------------ccccccccccccCchhhhhhc-ccccch----hHHHHHhh
Q psy1907 315 HLPTTYIKRKSSE------------YKVGNGEDSFCVSPLYNLTIQ-SSSFQS----ITIQCFAS 362 (1320)
Q Consensus 315 p~~~~~~~~~~~L------------~~lG~~~~~~~v~p~~~~~l~-~~~~~~----l~~~~~~~ 362 (1320)
|.|+++++|+|.| |.||..|++||+||+++++|+ +.+|+| |++.||++
T Consensus 430 PAPEtLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLs 494 (699)
T KOG0925|consen 430 PAPETLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLS 494 (699)
T ss_pred CChHHHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhccc
Confidence 9999999999888 555889999999999999976 788988 44444333
No 18
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.7e-64 Score=626.96 Aligned_cols=337 Identities=42% Similarity=0.611 Sum_probs=307.7
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhc-CCCCcEEEEecCcCHHHHHhhcCCCCEEEeCC
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRF-RSDLKLLISSATLDAQKFSEFFDDAPVFRIPG 79 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~-r~~~qlIl~SATl~~~~f~~~f~~~~vi~i~g 79 (1320)
||+|+|+|+++.||.|+.|++|||||||||++++|+++|++|.++.. |+|+|+|+||||+|+++|++||+++|++.++|
T Consensus 145 mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~rfs~~f~~apvi~i~G 224 (845)
T COG1643 145 MTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAERFSAYFGNAPVIEIEG 224 (845)
T ss_pred eccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHHHHHHHcCCCCEEEecC
Confidence 89999999999999999999999999999999999999999997764 45899999999999999999999999999999
Q ss_pred cccceeEEEEcCCccch-HHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCH
Q psy1907 80 RRFPVDIYYTKAPEADY-IDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPT 158 (1320)
Q Consensus 80 ~~~pV~~~y~~~~~~~~-l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~ 158 (1320)
++|||+++|.+.+..++ +++++..+++++..+++|+|||||||+++|+.+++.|.+ ..++ +.+.|+||||.|+.
T Consensus 225 R~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~--~~l~---~~~~i~PLy~~L~~ 299 (845)
T COG1643 225 RTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEK--AELG---DDLEILPLYGALSA 299 (845)
T ss_pred CccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHh--cccc---CCcEEeeccccCCH
Confidence 99999999999998999 999999999999999999999999999999999999987 1122 57899999999999
Q ss_pred HHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCC
Q psy1907 159 DMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLS 238 (1320)
Q Consensus 159 ~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~ 238 (1320)
++|.++|++.+.|+||||+||||||+|||||||+||||+|+.+.+.||+++|+..|.++|||++++.||+|||||++||
T Consensus 300 ~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pG- 378 (845)
T COG1643 300 EEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPG- 378 (845)
T ss_pred HHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceEEEEecCHHHHhhcccccCCccccCCcchhhhhhccccccccccccccccccceeccccccc-ccchhhhhhcCCCh
Q psy1907 239 DFRGCAHVLGEEVLRGCAHVLGEEVLRPEVSQPFRSFGYLGVMQDCRYIGTYLVGFIWHWKNHYI-QDQTLVTFMLTHLP 317 (1320)
Q Consensus 239 ~fg~~~~L~~~~~~~~l~~~~~pei~~~~l~~~~L~~~~l~~~~~~~~~~~~~~~~il~~~~l~~-~d~~~f~~~~~p~~ 317 (1320)
+||+||++++|..++.+..|||++++|+. ++|+++++|+ .|...|.|+.+|+.
T Consensus 379 ---icyRLyse~~~~~~~~~t~PEIlrtdLs~-----------------------~vL~l~~~G~~~d~~~f~fld~P~~ 432 (845)
T COG1643 379 ---ICYRLYSEEDFLAFPEFTLPEILRTDLSG-----------------------LVLQLKSLGIGQDIAPFPFLDPPPE 432 (845)
T ss_pred ---eEEEecCHHHHHhcccCCChhhhhcchHH-----------------------HHHHHHhcCCCCCcccCccCCCCCh
Confidence 89999999999999999999999998864 4556666666 38899999999999
Q ss_pred hhhhhhcccc------------ccccccccccccCchhhhhhc-ccccchhHHHHHhhccccccccceeeeccCCCCCC
Q psy1907 318 TTYIKRKSSE------------YKVGNGEDSFCVSPLYNLTIQ-SSSFQSITIQCFASLQLHHPVIQLFTILPSSSTSS 383 (1320)
Q Consensus 318 ~~~~~~~~~L------------~~lG~~~~~~~v~p~~~~~l~-~~~~~~l~~~~~~~~~~~~p~~~~~~i~~~~~~~~ 383 (1320)
..+.+|+..| |.+|+.|+.||++|.+|++|+ +.+++|+..+ ++|++|||+.+
T Consensus 433 ~~i~~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~--------------~~Ias~Ls~~~ 497 (845)
T COG1643 433 AAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEA--------------ATIASMLSEQD 497 (845)
T ss_pred HHHHHHHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHH--------------HHHHHhhccCC
Confidence 9876666665 666888999999999999976 6667775544 36667777666
No 19
>KOG0926|consensus
Probab=100.00 E-value=6.8e-56 Score=521.52 Aligned_cols=329 Identities=36% Similarity=0.534 Sum_probs=294.0
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcC----------CCCcEEEEecCcCHHHHHh---
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFR----------SDLKLLISSATLDAQKFSE--- 67 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r----------~~~qlIl~SATl~~~~f~~--- 67 (1320)
||||.||++|.+|-+|+.||+|||||||||+++||+|.|+|.++.++| +.+|+|+||||+-+..|.+
T Consensus 355 MTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~ 434 (1172)
T KOG0926|consen 355 MTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKR 434 (1172)
T ss_pred ecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecccccCce
Confidence 899999999999999999999999999999999999999999987754 2689999999997777763
Q ss_pred hcC-CCCEEEeCCcccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHh-------
Q psy1907 68 FFD-DAPVFRIPGRRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRR------- 139 (1320)
Q Consensus 68 ~f~-~~~vi~i~g~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~------- 139 (1320)
.|. -+|++.|+.|+|||.+||.+....||+..+..-...||...|+|.||||++|+.+|+.+++.|.++.+.
T Consensus 435 LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~ 514 (1172)
T KOG0926|consen 435 LFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKM 514 (1172)
T ss_pred ecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchh
Confidence 565 477999999999999999999889999999999999999999999999999999999999999986320
Q ss_pred --h----------------------------------------c------------------------------------
Q psy1907 140 --L----------------------------------------G------------------------------------ 141 (1320)
Q Consensus 140 --l----------------------------------------~------------------------------------ 141 (1320)
+ .
T Consensus 515 ~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~ 594 (1172)
T KOG0926|consen 515 KKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAE 594 (1172)
T ss_pred hhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhh
Confidence 0 0
Q ss_pred -----CCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccce
Q psy1907 142 -----SKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTV 216 (1320)
Q Consensus 142 -----~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~ 216 (1320)
.....+-|+|||+-|+.+.|.++|+..|.|.|-+|||||+||+|||||||+||||||+.|...||..+|++++.+
T Consensus 595 ~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV 674 (1172)
T KOG0926|consen 595 QGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEV 674 (1172)
T ss_pred hccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEE
Confidence 001257799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHHHh-hcccccCCccccCCcchhhhhhccccccccccccccccccce
Q psy1907 217 VPISKASANQRAGVITGFNPLSDFRGCAHVLGEEVLR-GCAHVLGEEVLRPEVSQPFRSFGYLGVMQDCRYIGTYLVGFI 295 (1320)
Q Consensus 217 ~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~~-~l~~~~~pei~~~~l~~~~L~~~~l~~~~~~~~~~~~~~~~i 295 (1320)
.|||++++.||+|||||+||| +|||||+...|. .|.++..|||++.+.+. ++
T Consensus 675 ~wiSkASadQRAGRAGRtgpG----HcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~-----------------------lv 727 (1172)
T KOG0926|consen 675 DWISKASADQRAGRAGRTGPG----HCYRLYSSAVFSNDFEEFSLPEILKKPVES-----------------------LV 727 (1172)
T ss_pred EeeeccccchhccccCCCCCC----ceeehhhhHHhhcchhhhccHHHhhCcHHH-----------------------HH
Confidence 999999999999999999998 899999999998 78889999999988754 56
Q ss_pred ecccccccccchhhhhhcCCChhh------------hhhhccccccccccccccccCchhhhhhc-ccccchhH
Q psy1907 296 WHWKNHYIQDQTLVTFMLTHLPTT------------YIKRKSSEYKVGNGEDSFCVSPLYNLTIQ-SSSFQSIT 356 (1320)
Q Consensus 296 l~~~~l~~~d~~~f~~~~~p~~~~------------~~~~~~~L~~lG~~~~~~~v~p~~~~~l~-~~~~~~l~ 356 (1320)
|++|+++|+.+..|.|-.||-+.. .++..+-||.||..|+-||+.|.+||||+ +.+.+|++
T Consensus 728 LqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lp 801 (1172)
T KOG0926|consen 728 LQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLP 801 (1172)
T ss_pred HHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcchh
Confidence 677788888899999988887665 34445566999999999999999999966 67777743
No 20
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1e-54 Score=551.15 Aligned_cols=337 Identities=32% Similarity=0.483 Sum_probs=292.9
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhh-cCCCCcEEEEecCcCHHHHHhhcCCCCEEEeCC
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVR-FRSDLKLLISSATLDAQKFSEFFDDAPVFRIPG 79 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~-~r~~~qlIl~SATl~~~~f~~~f~~~~vi~i~g 79 (1320)
||||+|++++..++.|++|++|||||||||++++|+++++++.+.. .++++|+|+||||++.+.|++||++++++.++|
T Consensus 96 ~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~l~~~l~~~~vI~~~g 175 (819)
T TIGR01970 96 VTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGERLSSLLPDAPVVESEG 175 (819)
T ss_pred ECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHcCCCcEEEecC
Confidence 6999999999999999999999999999999999999999988765 688999999999999999999999999999999
Q ss_pred cccceeEEEEcCCccchHHHHHH-HHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCH
Q psy1907 80 RRFPVDIYYTKAPEADYIDACVV-SILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPT 158 (1320)
Q Consensus 80 ~~~pV~~~y~~~~~~~~l~~~i~-~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~ 158 (1320)
+.|||+++|...+..+++...+. .+..+.. ..+|+|||||||+.+|+.+++.|.+.+. .++.+++|||+|++
T Consensus 176 r~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~~eI~~l~~~L~~~~~------~~~~v~pLHg~L~~ 248 (819)
T TIGR01970 176 RSFPVEIRYLPLRGDQRLEDAVSRAVEHALA-SETGSILVFLPGQAEIRRVQEQLAERLD------SDVLICPLYGELSL 248 (819)
T ss_pred cceeeeeEEeecchhhhHHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHhhcC------CCcEEEEecCCCCH
Confidence 99999999988776666554433 3333333 3479999999999999999999986431 37899999999999
Q ss_pred HHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCC
Q psy1907 159 DMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLS 238 (1320)
Q Consensus 159 ~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~ 238 (1320)
++|.++|++|++|++||||||||||||||||+|+||||+|+++.+.||+.+|++.|.+.|||+++|.||+|||||.++|
T Consensus 249 ~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G- 327 (819)
T TIGR01970 249 AAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPG- 327 (819)
T ss_pred HHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceEEEEecCHHHHhhcccccCCccccCCcchhhhhhccccccccccccccccccceecccccccccchhhhhhcCCChh
Q psy1907 239 DFRGCAHVLGEEVLRGCAHVLGEEVLRPEVSQPFRSFGYLGVMQDCRYIGTYLVGFIWHWKNHYIQDQTLVTFMLTHLPT 318 (1320)
Q Consensus 239 ~fg~~~~L~~~~~~~~l~~~~~pei~~~~l~~~~L~~~~l~~~~~~~~~~~~~~~~il~~~~l~~~d~~~f~~~~~p~~~ 318 (1320)
.||+||+++++..+.++..|||++.+|+..+|.++..|+ .|...|.|+.+||+.
T Consensus 328 ---~cyrL~t~~~~~~l~~~~~PEI~r~~L~~~~L~l~~~g~-----------------------~~~~~~~~l~~P~~~ 381 (819)
T TIGR01970 328 ---VCYRLWSEEQHQRLPAQDEPEILQADLSGLALELAQWGA-----------------------KDPSDLRWLDAPPSV 381 (819)
T ss_pred ---EEEEeCCHHHHHhhhcCCCcceeccCcHHHHHHHHHcCC-----------------------CChhhCCCCCCcCHH
Confidence 899999999999999999999999999877666655554 455668899999988
Q ss_pred hhhhhc------------cccccccccccccccCchhhhhhc-ccccchhHHHHHhhccccccccceeeeccCCCCCCcc
Q psy1907 319 TYIKRK------------SSEYKVGNGEDSFCVSPLYNLTIQ-SSSFQSITIQCFASLQLHHPVIQLFTILPSSSTSSRL 385 (1320)
Q Consensus 319 ~~~~~~------------~~L~~lG~~~~~~~v~p~~~~~l~-~~~~~~l~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~ 385 (1320)
.+..+. +.||.+|+.|+.+|++|.+|++|+ +.+++|...+| .|.++|+..+++
T Consensus 382 ~i~~a~~~L~~lgald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~--------------~iaa~ls~~~~~ 447 (819)
T TIGR01970 382 ALAAARQLLQRLGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALAC--------------DLAALLEERGLP 447 (819)
T ss_pred HHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHH--------------HHHHHHcCCCCC
Confidence 754444 455777899999999999999966 67788865544 556666665554
No 21
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.9e-53 Score=539.15 Aligned_cols=330 Identities=32% Similarity=0.485 Sum_probs=289.0
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhh-cCCCCcEEEEecCcCHHHHHhhcCCCCEEEeCC
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVR-FRSDLKLLISSATLDAQKFSEFFDDAPVFRIPG 79 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~-~r~~~qlIl~SATl~~~~f~~~f~~~~vi~i~g 79 (1320)
||||+|++++..++.|++|++|||||||||++++|+++++++.+.. .++++|+|+||||++.+.|++||++++++.++|
T Consensus 99 ~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~~l~~~~~~~~~I~~~g 178 (812)
T PRK11664 99 VTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQLLPDAPVIVSEG 178 (812)
T ss_pred EChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHHHHHHhcCCCCEEEecC
Confidence 6999999999999999999999999999999999999999988765 688999999999999999999999999999999
Q ss_pred cccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHH
Q psy1907 80 RRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTD 159 (1320)
Q Consensus 80 ~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~ 159 (1320)
+.|||+++|...+..++++..+..++.......+|+||||+||+.+|+.+++.|.+... .++.++++||+|+++
T Consensus 179 r~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~------~~~~v~~Lhg~l~~~ 252 (812)
T PRK11664 179 RSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVA------SDVLLCPLYGALSLA 252 (812)
T ss_pred ccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhcc------CCceEEEeeCCCCHH
Confidence 99999999998877777765544433333344479999999999999999999986321 368899999999999
Q ss_pred HHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCC
Q psy1907 160 MQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSD 239 (1320)
Q Consensus 160 ~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~ 239 (1320)
+|.+++.+|++|++||||||||||||||||+|+||||+|+++...||+.+|++.|.+.|||+++|.||+|||||.++|
T Consensus 253 eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G-- 330 (812)
T PRK11664 253 EQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPG-- 330 (812)
T ss_pred HHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ceEEEEecCHHHHhhcccccCCccccCCcchhhhhhccccccccccccccccccceecccccccccchhhhhhcCCChhh
Q psy1907 240 FRGCAHVLGEEVLRGCAHVLGEEVLRPEVSQPFRSFGYLGVMQDCRYIGTYLVGFIWHWKNHYIQDQTLVTFMLTHLPTT 319 (1320)
Q Consensus 240 fg~~~~L~~~~~~~~l~~~~~pei~~~~l~~~~L~~~~l~~~~~~~~~~~~~~~~il~~~~l~~~d~~~f~~~~~p~~~~ 319 (1320)
.||+||+++++..++++..|||++.+|+..+|.++..| +.|...|.|+.+|++..
T Consensus 331 --~cyrL~t~~~~~~l~~~~~PEI~r~dL~~~~L~l~~~g-----------------------~~~~~~~~~ld~P~~~~ 385 (812)
T PRK11664 331 --ICLHLYSKEQAERAAAQSEPEILHSDLSGLLLELLQWG-----------------------CHDPAQLSWLDQPPAAA 385 (812)
T ss_pred --EEEEecCHHHHhhCccCCCCceeccchHHHHHHHHHcC-----------------------CCCHHhCCCCCCCCHHH
Confidence 89999999999999999999999999987766655555 44566788999999887
Q ss_pred hhhhc------------cccccccccccccccCchhhhhhc-ccccch--hHHHHHhhc
Q psy1907 320 YIKRK------------SSEYKVGNGEDSFCVSPLYNLTIQ-SSSFQS--ITIQCFASL 363 (1320)
Q Consensus 320 ~~~~~------------~~L~~lG~~~~~~~v~p~~~~~l~-~~~~~~--l~~~~~~~~ 363 (1320)
+..+. +.||.+|+.|+.||++|.+|++|+ +.++++ ++++|++..
T Consensus 386 ~~~A~~~L~~lgald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laa 444 (812)
T PRK11664 386 LAAAKRLLQQLGALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAA 444 (812)
T ss_pred HHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 54444 455777899999999999999966 566665 356764443
No 22
>KOG0920|consensus
Probab=100.00 E-value=1.1e-53 Score=530.01 Aligned_cols=347 Identities=31% Similarity=0.445 Sum_probs=300.9
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhcCCCCEEEeCCc
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFFDDAPVFRIPGR 80 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~~~~vi~i~g~ 80 (1320)
||.|.|||.+..++.+.+++|||+||+|||++++|+++-++|.++..++++|+||||||+|++.|++||+++|++.|+|+
T Consensus 270 cTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~dae~fs~YF~~~pvi~i~gr 349 (924)
T KOG0920|consen 270 CTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLDAELFSDYFGGCPVITIPGR 349 (924)
T ss_pred ecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecchHHHHHHhCCCceEeecCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEcC-----------------Cccc--------------hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHH
Q psy1907 81 RFPVDIYYTKA-----------------PEAD--------------YIDACVVSILQIHATQPLGDILVFLTGQEEIETC 129 (1320)
Q Consensus 81 ~~pV~~~y~~~-----------------~~~~--------------~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l 129 (1320)
+|||..+|++. +... ..+....++.+|+....+|.||||+||.++|..+
T Consensus 350 tfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~ 429 (924)
T KOG0920|consen 350 TFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQL 429 (924)
T ss_pred CcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHH
Confidence 99999887331 1111 1234556677788887799999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCC
Q psy1907 130 NEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRT 209 (1320)
Q Consensus 130 ~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~ 209 (1320)
+..|.....- . +...+.++|+|+.|+..+|+.+|...+.|.||||+||||||+|||||+|.||||+|..|.+.||+..
T Consensus 430 ~~~L~~~~~f-~-~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~ 507 (924)
T KOG0920|consen 430 KELLEVNLPF-A-DSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPER 507 (924)
T ss_pred HHHhhhcccc-c-cccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccC
Confidence 9999764321 1 1146999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHHHhhccc-ccCCccccCCcchhhhhhccccccccccccc
Q psy1907 210 GMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEVLRGCAH-VLGEEVLRPEVSQPFRSFGYLGVMQDCRYIG 288 (1320)
Q Consensus 210 g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~~~l~~-~~~pei~~~~l~~~~L~~~~l~~~~~~~~~~ 288 (1320)
++.++...|+|++++.||+|||||..+| .||+||+...|+.+.. +..||+++.++.+.||+.|.+++..-.+|+
T Consensus 508 ~~s~l~~~wvSkAna~QR~GRAGRv~~G----~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fL- 582 (924)
T KOG0920|consen 508 KVSCLLLSWVSKANAKQRRGRAGRVRPG----ICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFL- 582 (924)
T ss_pred CcchhheeeccccchHHhcccccCccCC----eeEEeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHH-
Confidence 9999999999999999999999999998 8999999999999888 999999999999999999977765544332
Q ss_pred cccccceecccccccccchhhhhhcCCChhhh------------hhhccccccccccccccccCchhhhhhc-ccccchh
Q psy1907 289 TYLVGFIWHWKNHYIQDQTLVTFMLTHLPTTY------------IKRKSSEYKVGNGEDSFCVSPLYNLTIQ-SSSFQSI 355 (1320)
Q Consensus 289 ~~~~~~il~~~~l~~~d~~~f~~~~~p~~~~~------------~~~~~~L~~lG~~~~~~~v~p~~~~~l~-~~~~~~l 355 (1320)
-..+.||+...+ ++..+.||.||..++.+|+||.+||+++ +..|+|
T Consensus 583 --------------------skaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ll~g~if~c- 641 (924)
T KOG0920|consen 583 --------------------SKALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGAIFGC- 641 (924)
T ss_pred --------------------HHhcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHHhCCCccccchhheehhhccc-
Confidence 134567766664 4444566889999999999999999966 566666
Q ss_pred HHHHHhhccccccccceeeeccCCCCCCccccc
Q psy1907 356 TIQCFASLQLHHPVIQLFTILPSSSTSSRLFTT 388 (1320)
Q Consensus 356 ~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~ 388 (1320)
++|+++|.++|++.+|.-+-
T Consensus 642 -------------Ldp~l~iaa~Ls~k~PF~~~ 661 (924)
T KOG0920|consen 642 -------------LDPALTIAAALSFKSPFVSP 661 (924)
T ss_pred -------------cchhhhHHHHhccCCCcccC
Confidence 56667777887777776554
No 23
>KOG0921|consensus
Probab=100.00 E-value=1.1e-49 Score=473.26 Aligned_cols=459 Identities=28% Similarity=0.424 Sum_probs=377.7
Q ss_pred hhhHHHHhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCC---cEEEEecccHHHHHHHHHHH
Q psy1907 659 KLNIEETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDK---MKIGCTQPRRVAAMSVSARV 735 (1320)
Q Consensus 659 ~~~i~~~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~---~~I~~tQPRRvAA~svA~rv 735 (1320)
...+.++|.+|||..++++|++++.+|+|++|-|+||||||||+-|||+|+-..+.. ..+.++||||+.|+|+|.||
T Consensus 367 ~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerv 446 (1282)
T KOG0921|consen 367 LDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERV 446 (1282)
T ss_pred hhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHH
Confidence 456788999999999999999999999999999999999999999999998665542 36899999999999999999
Q ss_pred HHHhCCCCCCeeeEEeecCccCC-CCccEEEEccHHHHHHHhcCCCCCCccEEEEcccccc-------------------
Q psy1907 736 AEEMGVKLGCEVGYAIRFEDCTS-ERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPK------------------- 795 (1320)
Q Consensus 736 a~e~~~~lG~~VGY~irfe~~~s-~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER------------------- 795 (1320)
|.|+++.+|++|||++||++.++ +-..|.|||.|.|||.+ ...|.+.||+|+||+|||
T Consensus 447 a~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~--e~glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~ 524 (1282)
T KOG0921|consen 447 ANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMM--ENGLRGISHVIIDEIHERDVDTDFVLIVLREMISTYR 524 (1282)
T ss_pred HHhhHHhhcccccccccccccccccccceeeeccchhhhhh--hhcccccccccchhhhhhccchHHHHHHHHhhhccch
Confidence 99999999999999999999998 46789999999999987 557999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 525 dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~ 604 (1282)
T KOG0921|consen 525 DLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNIL 604 (1282)
T ss_pred hhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 605 ~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~ 684 (1282)
T KOG0921|consen 605 CDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQL 684 (1282)
T ss_pred cChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhc
Confidence
Q ss_pred -----------------------------------eEEEcCCccceeeccCCCCcceeEEEEecHhhHHHHhcccCCccC
Q psy1907 796 -----------------------------------VYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGRAGRVAA 840 (1320)
Q Consensus 796 -----------------------------------~~ViD~G~~k~~~y~~~~~~~~L~~~~iSkasa~QR~GRAGR~~p 840 (1320)
+||||++.++.+.|-..+.|....++|.||-+-.||+|||||++|
T Consensus 685 ~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~ 764 (1282)
T KOG0921|consen 685 TSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRP 764 (1282)
T ss_pred ccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecc
Confidence 799999999999999999999999999999999999999999999
Q ss_pred CeEEEecchHHhhhhccCCCchhhhccChHHHHHHHHHcCCCCcccc--cCCCCCChHHHHHHHHHHHHccccCCCCCcc
Q psy1907 841 GKCFRLYTAWAYKHELEDNTVPEIQRINLGNAVLMLKALGINDLIHF--DFLDPPPHETLVLALEQLYALGALNHHGDLT 918 (1320)
Q Consensus 841 G~cyrLyt~~~~~~~l~~~~~PEI~R~~L~~~vL~lk~lgi~d~~~f--~fldpP~~~~l~~Ale~L~~LgAld~~g~LT 918 (1320)
|.||+|.+...|+ .++++-+||+.|++|..+.|..|-+-...+..| .-+.||+.++++.+-..|..++++|.++.||
T Consensus 765 G~~f~lcs~arF~-~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt 843 (1282)
T KOG0921|consen 765 GFCFHLCSRARFE-ALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELT 843 (1282)
T ss_pred cccccccHHHHHH-HHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCccc
Confidence 9999999999986 599999999999999999998887776666665 5679999999999999999999999999999
Q ss_pred ccccccccccCChhhHHHHHhhhhccchHHHHHHHhhcccCCccccCChhHHHHH----HHHHhhhcc-cCCCHHHHHHH
Q psy1907 919 KLGRRMAEFPLDPMMGKMLLASEKYKCVEEIVTIASMLSVNGAIFYRPKDKIIHA----DTARKNFFM-LGGDHLVLLNI 993 (1320)
Q Consensus 919 ~lG~~ma~lPldP~laK~Ll~s~~~~c~~e~ltIaA~Lsv~~~~f~~p~~~~~~a----~~~r~~f~~-~~gDhltllnv 993 (1320)
++|+.++.+|++|.++||++.+.-++|..-++.+|+.+|...++|-.-+.....+ ..+..+|.. --+||.+.+.+
T Consensus 844 ~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~~~g~kfsdhva~~~v~q~~r 923 (1282)
T KOG0921|consen 844 PLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAGNKFSDHVAIVSVIQGYR 923 (1282)
T ss_pred chhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchhhccccccccchhhhhhhhhhH
Confidence 9999999999999999999999999999999999998877544443222211111 122344442 24577777777
Q ss_pred HHHHhhcccchhhHHhhccchhhHHHHHHHHHHHHHHHHhhhcc--------ccCCC--ccchHHHHHHHhccccchhhc
Q psy1907 994 YNQWADADFSTQWCYENFIQHRSMKRARDVREQLIGLVQRVEME--------LVSNP--TETVNIRKAITAGYFYHIAKL 1063 (1320)
Q Consensus 994 y~~w~~~~~~~~wC~~n~l~~~~l~~a~~ir~QL~~~l~r~~~~--------~~s~~--~~~~~i~kal~aG~~~nvA~l 1063 (1320)
+..|.++.....+|.+..++.+.|+...+.+.||...|+...++ ..-++ .....++..|+.+.++|+|..
T Consensus 924 ~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~~fpe~~~~~~~v~~ng~d~~l~~~~~lL~~~lypn~~~y 1003 (1282)
T KOG0921|consen 924 EAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLRQCSFPEDILFDISVNVNGPDRELNLMRSLLVMALYPNVAYY 1003 (1282)
T ss_pred HHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHHhccCccccccceeeccCCCCchhHHHHHHHHhhcCCcccee
Confidence 88888776678899999999999999999999999988855432 01111 223345556777888888876
Q ss_pred ccCCCcccccCCceEEECCCCCCC--c-----cCCcccchhhhhcchHhHhhheeeeChhchHhh
Q psy1907 1064 SKSGSYKTAKHNQTVMIHPNSSLF--E-----ELPRWVLYHELVFTTKEFMRQVTEIESKWLLEV 1121 (1320)
Q Consensus 1064 ~~~g~y~t~~~~~~v~iHPsS~l~--~-----~~p~~vvy~elv~Tsk~y~r~vt~I~~~wLle~ 1121 (1320)
.....-.| ..+....||-.|++- + .+.+|+||.|.+.|...-..+.+-|.|--|+-+
T Consensus 1004 ~ekrkvLt-Te~~~alihk~Svncp~S~qdM~fPsPFFVFGEKIRTRAIS~K~MslVsPLQLLLF 1067 (1282)
T KOG0921|consen 1004 VEKRKVLT-TEQSSALIHKYSVNCPNSRQEMDFPSPFFVFGEKIRTRAISCKQMSLVSPLQLLLF 1067 (1282)
T ss_pred ccceeEEe-ecchhhhhhhhcccCCCcccccCCCCceeeechhhhhheecccCccccChHHHhhh
Confidence 54433333 345556677766553 2 234799999999987544455666666444443
No 24
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=7.7e-39 Score=398.17 Aligned_cols=241 Identities=23% Similarity=0.275 Sum_probs=204.5
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccC-----C--------CCCcEEEEecccHHHHHHHHHHHHHHhCC
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGF-----T--------KDKMKIGCTQPRRVAAMSVSARVAEEMGV 741 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~-----~--------~~~~~I~~tQPRRvAA~svA~rva~e~~~ 741 (1320)
.++++..+.+++.+|++|+|||||||||||||+|.+| . ..+++|+||||||.+|..++.++.++.|.
T Consensus 169 Q~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg~ 248 (675)
T PHA02653 169 QLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLGF 248 (675)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhCc
Confidence 4589999999999999999999999999999998632 2 12458999999999999999999888776
Q ss_pred CCCCeeeEEeecCccCCC--Ccc-----EEEEccHHHHHHHhcCCCCCCccEEEEcccccc-------------------
Q psy1907 742 KLGCEVGYAIRFEDCTSE--RTI-----IKYMTDGTLHREFLSEPDLASYSVMIIDEAHPK------------------- 795 (1320)
Q Consensus 742 ~lG~~VGY~irfe~~~s~--~T~-----i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER------------------- 795 (1320)
.....+.++++|+++.+. +|+ |+++|.|+ .++.|++|++|||||||||
T Consensus 249 ~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L------~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~r 322 (675)
T PHA02653 249 DEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL------TLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDKIR 322 (675)
T ss_pred cccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc------cccccccCCEEEccccccCccchhHHHHHHHHhhhhcC
Confidence 444446779999988754 444 66666553 5678999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 323 q~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFl 402 (675)
T PHA02653 323 SLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFV 402 (675)
T ss_pred EEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEE
Confidence
Q ss_pred ---------------------------------------------------------------eEEEcCCccceeeccCC
Q psy1907 796 ---------------------------------------------------------------VYVIDPGFCKQNNFNSR 812 (1320)
Q Consensus 796 ---------------------------------------------------------------~~ViD~G~~k~~~y~~~ 812 (1320)
++|||+|++|.+. +.
T Consensus 403 pg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~--~~ 480 (675)
T PHA02653 403 ASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE--PF 480 (675)
T ss_pred CcHHHHHHHHHHHHhhcCCceEEeccCCcCHHHHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCC--cc
Confidence 6899999988774 56
Q ss_pred CCcceeEEEEecHhhHHHHhcccCCccCCeEEEecchHHhhhhccCCCchhhhccC---hHHHHHHHHHcCCCCcccccC
Q psy1907 813 TGMESLTVVPISKASANQRAGRAGRVAAGKCFRLYTAWAYKHELEDNTVPEIQRIN---LGNAVLMLKALGINDLIHFDF 889 (1320)
Q Consensus 813 ~~~~~L~~~~iSkasa~QR~GRAGR~~pG~cyrLyt~~~~~~~l~~~~~PEI~R~~---L~~~vL~lk~lgi~d~~~f~f 889 (1320)
+|++ .|||+|+|.||+|||||++||.||||||+..+ .| |+|++ |.++||++|+||+++ ..+.|
T Consensus 481 ~g~~----~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~--------~p-I~ri~~~~L~~~vL~lk~~g~~~-~~~~~ 546 (675)
T PHA02653 481 GGKE----MFISKSMRTQRKGRVGRVSPGTYVYFYDLDLL--------KP-IKRIDSEFLHNYILYAKYFNLTL-PEDLF 546 (675)
T ss_pred cCcc----cccCHHHHHHhccCcCCCCCCeEEEEECHHHh--------HH-HHHHhHHHHHHHHHHHHHcCCCC-ccccc
Confidence 6664 59999999999999999999999999999753 24 66666 899999999999954 45669
Q ss_pred CCCCChHHHHHHHHHHHHccccCCCCCcccc--ccccccccCChhhHHHHHhhhhc
Q psy1907 890 LDPPPHETLVLALEQLYALGALNHHGDLTKL--GRRMAEFPLDPMMGKMLLASEKY 943 (1320)
Q Consensus 890 ldpP~~~~l~~Ale~L~~LgAld~~g~LT~l--G~~ma~lPldP~laK~Ll~s~~~ 943 (1320)
+|||+.+++.+|++.|..+||+|+ +||.+ |+.|+.+ ++||+++.|...
T Consensus 547 ldpP~~~~l~~A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~~~ 596 (675)
T PHA02653 547 VIPSNLDRLRKTEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGGIL 596 (675)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhcccHh
Confidence 999999999999999999998866 89999 9999998 999999998763
No 25
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=8.5e-39 Score=397.77 Aligned_cols=274 Identities=22% Similarity=0.283 Sum_probs=214.1
Q ss_pred CCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCc--CHHHHHhhcCCCCEEEeCCcc-cceeEEE
Q psy1907 12 SEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL--DAQKFSEFFDDAPVFRIPGRR-FPVDIYY 88 (1320)
Q Consensus 12 ~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl--~~~~f~~~f~~~~vi~i~g~~-~pV~~~y 88 (1320)
..+.|+++++|||||||||+.++|+++++++.+... ..|+++||||+ +.+.|++||++++++.++|++ +||+++|
T Consensus 285 ~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~--~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~y 362 (675)
T PHA02653 285 TLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK--IRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVY 362 (675)
T ss_pred cccccccCCEEEccccccCccchhHHHHHHHHhhhh--cCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEE
Confidence 456799999999999999999999999999876532 24899999999 456899999999999999985 9999999
Q ss_pred EcCCc-----cchHHHHHHHHHHHHhh---CCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHH
Q psy1907 89 TKAPE-----ADYIDACVVSILQIHAT---QPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDM 160 (1320)
Q Consensus 89 ~~~~~-----~~~l~~~i~~v~~i~~~---~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~ 160 (1320)
...+. .++++.....+..++.. ..+|++|||+||+++|+.+++.|.+.. +++.+.+|||+|++.+
T Consensus 363 i~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~-------~~~~v~~LHG~Lsq~e 435 (675)
T PHA02653 363 VKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL-------PIYDFYIIHGKVPNID 435 (675)
T ss_pred eecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc-------CCceEEeccCCcCHHH
Confidence 76542 23333332333333322 235799999999999999999998642 3688999999999874
Q ss_pred HHHHcCCC-CCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCC
Q psy1907 161 QTKIFLPT-PPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSD 239 (1320)
Q Consensus 161 r~~i~~~~-~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~ 239 (1320)
+ +++.| ++|+++|||||||||||||||+|++|||+|+++.+. +..|+ ..|+|+++|.||+|||||.++|
T Consensus 436 q--~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G-- 505 (675)
T PHA02653 436 E--ILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPG-- 505 (675)
T ss_pred H--HHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCC--
Confidence 3 33444 679999999999999999999999999999877653 44554 4699999999999999999887
Q ss_pred ceEEEEecCHHHHhhcccccCCccccCCcchhhhhhccccccccccccccccccceecccccccccchhhhhhcCCChhh
Q psy1907 240 FRGCAHVLGEEVLRGCAHVLGEEVLRPEVSQPFRSFGYLGVMQDCRYIGTYLVGFIWHWKNHYIQDQTLVTFMLTHLPTT 319 (1320)
Q Consensus 240 fg~~~~L~~~~~~~~l~~~~~pei~~~~l~~~~L~~~~l~~~~~~~~~~~~~~~~il~~~~l~~~d~~~f~~~~~p~~~~ 319 (1320)
.||+||+++++. | +.+.+++ .+.+++|.++.+|++ ...+.|+.||++..
T Consensus 506 --~c~rLyt~~~~~-------p-I~ri~~~--------------------~L~~~vL~lk~~g~~-~~~~~~ldpP~~~~ 554 (675)
T PHA02653 506 --TYVYFYDLDLLK-------P-IKRIDSE--------------------FLHNYILYAKYFNLT-LPEDLFVIPSNLDR 554 (675)
T ss_pred --eEEEEECHHHhH-------H-HHHHhHH--------------------HHHHHHHHHHHcCCC-CcccccCCCCCHHH
Confidence 899999998742 2 3443321 134455566666663 33445899999999
Q ss_pred hhhhcccccccccccc
Q psy1907 320 YIKRKSSEYKVGNGED 335 (1320)
Q Consensus 320 ~~~~~~~L~~lG~~~~ 335 (1320)
+..|.+.|..||+...
T Consensus 555 l~~A~~~L~~lga~~~ 570 (675)
T PHA02653 555 LRKTEEYIDSFNISIE 570 (675)
T ss_pred HHHHHHHHHHcCCCch
Confidence 9999999999997665
No 26
>KOG0345|consensus
Probab=100.00 E-value=6.4e-37 Score=347.65 Aligned_cols=327 Identities=15% Similarity=0.180 Sum_probs=248.7
Q ss_pred CCHHHHHHHHcCCCC-CC--CccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcC--HHHHHhh-cCCCCE
Q psy1907 1 MTDGTLHREFLSEPD-LA--SYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLD--AQKFSEF-FDDAPV 74 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls--~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~--~~~f~~~-f~~~~v 74 (1320)
.|||||++.+..... ++ +++++||||| +|.++|+|--.+-.++..+++++|+-|||||.+ .+.+... +.|+.-
T Consensus 137 gTPGRL~di~~~~~~~l~~rsLe~LVLDEA-DrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~ 215 (567)
T KOG0345|consen 137 GTPGRLLDILQREAEKLSFRSLEILVLDEA-DRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVR 215 (567)
T ss_pred eCchhHHHHHhchhhhccccccceEEecch-HhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCcee
Confidence 499999999987443 55 9999999999 699999999999999999999999999999994 3445554 445544
Q ss_pred EEeCCcc---cc--eeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEE
Q psy1907 75 FRIPGRR---FP--VDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELII 149 (1320)
Q Consensus 75 i~i~g~~---~p--V~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v 149 (1320)
+.+.... .| +..+|...+....+..+ +.+..+...+++|||+|||..+++++..+.... +...+
T Consensus 216 V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~l----v~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l-------~~~~i 284 (567)
T KOG0345|consen 216 VSVKEKSKSATPSSLALEYLVCEADEKLSQL----VHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLL-------KKREI 284 (567)
T ss_pred eeecccccccCchhhcceeeEecHHHHHHHH----HHHHhccccccEEEEecCcchHHHHHHHHHHHh-------CCCcE
Confidence 5554322 34 67788877655544443 444444556789999999999999999998752 57899
Q ss_pred EEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhh
Q psy1907 150 LPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAG 229 (1320)
Q Consensus 150 ~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~G 229 (1320)
+++||.|.+..|.++++.|...+..|++|||||+||||||||++||+++.|+ ..+++.||+|
T Consensus 285 ~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~------------------~~~~FvHR~G 346 (567)
T KOG0345|consen 285 FSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPK------------------DPSSFVHRCG 346 (567)
T ss_pred EEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCC------------------ChhHHHhhcc
Confidence 9999999999999999999998999999999999999999999999998854 3355566666
Q ss_pred hcCCCCCC-CCceEEEEecCHHHHhhccccc-CCccccCCcchh---hhh-----------hccccccccccccccc---
Q psy1907 230 VITGFNPL-SDFRGCAHVLGEEVLRGCAHVL-GEEVLRPEVSQP---FRS-----------FGYLGVMQDCRYIGTY--- 290 (1320)
Q Consensus 230 RAGR~g~g-~~fg~~~~L~~~~~~~~l~~~~-~pei~~~~l~~~---~L~-----------~~~l~~~~~~~~~~~~--- 290 (1320)
||||.|.. . -+.|.+-.+++|..+.... .|++.+...+.. +.+ +...|+.+..++++.+
T Consensus 347 RTaR~gr~G~--Aivfl~p~E~aYveFl~i~~~v~le~~~~e~~~~~~~~~ir~~~~~DR~~~dkG~kAFVS~VraY~~H 424 (567)
T KOG0345|consen 347 RTARAGREGN--AIVFLNPREEAYVEFLRIKGKVELERIDTEKASLSVYQDIRSIISKDRAVLDKGLKAFVSHVRAYKKH 424 (567)
T ss_pred hhhhccCccc--eEEEecccHHHHHHHHHhcCccchhhhcccccchhHHHHHHHHhcccHHHHhhhHHHHHHHHHHHhhc
Confidence 66655542 1 1455555677887765543 244433322211 111 2245566666666554
Q ss_pred cccceecccccccccchhhhhhcCCChhhhhhhccccccccccccccccCchhhhhhcccccchhHHHHHhhcccccccc
Q psy1907 291 LVGFIWHWKNHYIQDQTLVTFMLTHLPTTYIKRKSSEYKVGNGEDSFCVSPLYNLTIQSSSFQSITIQCFASLQLHHPVI 370 (1320)
Q Consensus 291 ~~~~il~~~~l~~~d~~~f~~~~~p~~~~~~~~~~~L~~lG~~~~~~~v~p~~~~~l~~~~~~~l~~~~~~~~~~~~p~~ 370 (1320)
..++||+|++|++..++.
T Consensus 425 ~cs~Ifr~kdLd~~~lA~-------------------------------------------------------------- 442 (567)
T KOG0345|consen 425 HCSYIFRLKDLDLGKLAT-------------------------------------------------------------- 442 (567)
T ss_pred ceeEEEeecCCcHHHHHH--------------------------------------------------------------
Confidence 899999999999988866
Q ss_pred ceeeeccCCCCCCcccccCCCCccccccccccCCcccccccCCCCcCCCCCCCCCCcccccccCccccccccccCCCC--
Q psy1907 371 QLFTILPSSSTSSRLFTTLPSSLAAVPHHIQRQSPAQSYHRMTPGCTDRRTQSPCPSCLKVFKTPKVRAFMGHFLTDS-- 448 (1320)
Q Consensus 371 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 448 (1320)
.++++.. |+|||++++...+.
T Consensus 443 -~YgLl~l--------------------------------------------------------P~M~Elk~~~~~~~~~ 465 (567)
T KOG0345|consen 443 -LYGLLRL--------------------------------------------------------PKMPELKQYKIGEFFF 465 (567)
T ss_pred -HHHHHhC--------------------------------------------------------CCcHHHhhhhccceec
Confidence 5667777 99999999988886
Q ss_pred cchhHhHHHHHHHHhhhhhhhhcccccccc
Q psy1907 449 DDDRKERDEFSERLKNRDKNNTKNVATSRQ 478 (1320)
Q Consensus 449 ~~d~~erd~~a~r~~~rd~~rt~~~~~~~~ 478 (1320)
-+...+-++..|+++.|+++|+.++...+.
T Consensus 466 ~~~~id~~~ikykdkkrEk~Rq~~l~~~~~ 495 (567)
T KOG0345|consen 466 PKPAIDFSEIKYKDKKREKQRQQKLKVRKE 495 (567)
T ss_pred cCCCcchhhhcccchHHHHHHHHHHHHHHH
Confidence 556688999999999999999999887555
No 27
>KOG0331|consensus
Probab=99.97 E-value=3.4e-30 Score=305.62 Aligned_cols=221 Identities=16% Similarity=0.204 Sum_probs=179.3
Q ss_pred CHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhc-CCCCcEEEEecCcCH--HHHHh-hcCCCCEEE
Q psy1907 2 TDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRF-RSDLKLLISSATLDA--QKFSE-FFDDAPVFR 76 (1320)
Q Consensus 2 T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~-r~~~qlIl~SATl~~--~~f~~-~f~~~~vi~ 76 (1320)
|||||++++..... |++++++||||| +||++++|-..+.+++.+. +++.|++++|||++. ..|++ |++++..+.
T Consensus 222 TPGRl~d~le~g~~~l~~v~ylVLDEA-DrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ 300 (519)
T KOG0331|consen 222 TPGRLIDLLEEGSLNLSRVTYLVLDEA-DRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQIN 300 (519)
T ss_pred CChHHHHHHHcCCccccceeEEEeccH-HhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEE
Confidence 99999999988776 999999999999 6999999999999999998 777799999999954 44554 666544454
Q ss_pred eCCc-----ccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy1907 77 IPGR-----RFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILP 151 (1320)
Q Consensus 77 i~g~-----~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~ 151 (1320)
+.+. ...+...-...+...+...+.. ++..+....+|++||||.|+..|+.+...|.. .++.+..
T Consensus 301 ig~~~~~~a~~~i~qive~~~~~~K~~~l~~-lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~---------~~~~a~~ 370 (519)
T KOG0331|consen 301 VGNKKELKANHNIRQIVEVCDETAKLRKLGK-LLEDISSDSEGKVIIFCETKRTCDELARNLRR---------KGWPAVA 370 (519)
T ss_pred ecchhhhhhhcchhhhhhhcCHHHHHHHHHH-HHHHHhccCCCcEEEEecchhhHHHHHHHHHh---------cCcceee
Confidence 4433 1233333323333333333333 33333356688999999999999999999986 2588999
Q ss_pred ecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhc
Q psy1907 152 VYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVI 231 (1320)
Q Consensus 152 LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRA 231 (1320)
|||+++|.+|..+++.|++|+..||||||+|+||||||+|++||||+| |-+.++|+||+||+
T Consensus 371 iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydf------------------P~~vEdYVHRiGRT 432 (519)
T KOG0331|consen 371 IHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDF------------------PNNVEDYVHRIGRT 432 (519)
T ss_pred ecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCC------------------CCCHHHHHhhcCcc
Confidence 999999999999999999999999999999999999999999999998 66789999999999
Q ss_pred CCCCCCCCceEEEEecCHHHHhh
Q psy1907 232 TGFNPLSDFRGCAHVLGEEVLRG 254 (1320)
Q Consensus 232 GR~g~g~~fg~~~~L~~~~~~~~ 254 (1320)
||.|.. |..|.+++.+++..
T Consensus 433 GRa~~~---G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 433 GRAGKK---GTAITFFTSDNAKL 452 (519)
T ss_pred ccCCCC---ceEEEEEeHHHHHH
Confidence 998876 79999999887654
No 28
>KOG0330|consensus
Probab=99.96 E-value=6.3e-29 Score=277.45 Aligned_cols=217 Identities=16% Similarity=0.195 Sum_probs=177.4
Q ss_pred CCHHHHHHHHcCCCC--CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCc--CHHHHHhh-cCCCCEE
Q psy1907 1 MTDGTLHREFLSEPD--LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL--DAQKFSEF-FDDAPVF 75 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~--Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl--~~~~f~~~-f~~~~vi 75 (1320)
.|||+|.+++.+... |.+++++|+||| +|.+++||...+-+++...+.++|++|||||| ...++..- +.++.-+
T Consensus 185 aTPGrL~dhl~~Tkgf~le~lk~LVlDEA-DrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v 263 (476)
T KOG0330|consen 185 ATPGRLWDHLENTKGFSLEQLKFLVLDEA-DRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKV 263 (476)
T ss_pred eCcHHHHHHHHhccCccHHHhHHHhhchH-HhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEE
Confidence 499999999996554 899999999999 69999999998888888899999999999999 44555543 3344445
Q ss_pred EeCCccc---ceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEe
Q psy1907 76 RIPGRRF---PVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPV 152 (1320)
Q Consensus 76 ~i~g~~~---pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~L 152 (1320)
.++.... .+.++|+..|..++...++. +.....++.+|||++|+...+.++-+|+. .++..++|
T Consensus 264 ~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~----ll~e~~g~s~iVF~~t~~tt~~la~~L~~---------lg~~a~~L 330 (476)
T KOG0330|consen 264 AVSSKYQTVDHLKQTYLFVPGKDKDTYLVY----LLNELAGNSVIVFCNTCNTTRFLALLLRN---------LGFQAIPL 330 (476)
T ss_pred eccchhcchHHhhhheEeccccccchhHHH----HHHhhcCCcEEEEEeccchHHHHHHHHHh---------cCcceecc
Confidence 5544332 24567877776665444333 33333357799999999999999999987 48999999
Q ss_pred cCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcC
Q psy1907 153 YSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVIT 232 (1320)
Q Consensus 153 H~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAG 232 (1320)
||.|++..|..+|+.|++|.+.|+||||||+||+|||.|++|||||+ |.+..+|+||+||+|
T Consensus 331 hGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDi------------------P~~skDYIHRvGRta 392 (476)
T KOG0330|consen 331 HGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDI------------------PTHSKDYIHRVGRTA 392 (476)
T ss_pred cchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCC------------------CCcHHHHHHHccccc
Confidence 99999999999999999999999999999999999999999999998 556688999999999
Q ss_pred CCCCCCCceEEEEecCHHHH
Q psy1907 233 GFNPLSDFRGCAHVLGEEVL 252 (1320)
Q Consensus 233 R~g~g~~fg~~~~L~~~~~~ 252 (1320)
|+|.. |.++.|.+.-+.
T Consensus 393 RaGrs---G~~ItlVtqyDv 409 (476)
T KOG0330|consen 393 RAGRS---GKAITLVTQYDV 409 (476)
T ss_pred ccCCC---cceEEEEehhhh
Confidence 99875 688888886443
No 29
>KOG0921|consensus
Probab=99.95 E-value=2.2e-29 Score=301.02 Aligned_cols=355 Identities=26% Similarity=0.368 Sum_probs=278.2
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhcCCCCEEEeCCc
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFFDDAPVFRIPGR 80 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~~~~vi~i~g~ 80 (1320)
||-|.|++.+.+. |..++++|+||+|||..++||++-+++.+....++++++|||||+|.+.|..||..+|.+.+.|+
T Consensus 478 ctvgvllr~~e~g--lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~gr 555 (1282)
T KOG0921|consen 478 CTVGVLLRMMENG--LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGR 555 (1282)
T ss_pred eccchhhhhhhhc--ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccchhhhhhhhccccceeeccc
Confidence 6888899987644 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEcC-------------------------Cccc-------------h----------------HHHHHHHHH-
Q psy1907 81 RFPVDIYYTKA-------------------------PEAD-------------Y----------------IDACVVSIL- 105 (1320)
Q Consensus 81 ~~pV~~~y~~~-------------------------~~~~-------------~----------------l~~~i~~v~- 105 (1320)
++||..+|... +..+ | .-.++..++
T Consensus 556 t~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~ 635 (1282)
T KOG0921|consen 556 TFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLN 635 (1282)
T ss_pred cccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHh
Confidence 99987654110 0000 0 001122222
Q ss_pred HHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccC
Q psy1907 106 QIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETS 185 (1320)
Q Consensus 106 ~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~g 185 (1320)
.|....-+|-||||+|+...|-.++..|.... .-++.....++|+|+-++..+|.++|+..+.|..|+|++||||+++
T Consensus 636 ~i~s~~i~gailvflpgwa~i~~L~~~ll~~~--~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaets 713 (1282)
T KOG0921|consen 636 DIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQ--EFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETS 713 (1282)
T ss_pred hhcccCCccceeeecCchHHhhhhhhhhhhhh--hhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEe
Confidence 22223337899999999999999999987642 2344567889999999999999999999999999999999999999
Q ss_pred CCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHHHhhcccccCCcccc
Q psy1907 186 LTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEVLRGCAHVLGEEVLR 265 (1320)
Q Consensus 186 ldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~~~l~~~~~pei~~ 265 (1320)
|||++++||||.+..+.+.|-..+.+....+.|.|+-+..||.||+||..+| .|+++.+...|..+.....|+..+
T Consensus 714 iTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G----~~f~lcs~arF~~l~~~~t~em~r 789 (1282)
T KOG0921|consen 714 ITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPG----FCFHLCSRARFEALEDHGTAEMFR 789 (1282)
T ss_pred eeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceeccc----ccccccHHHHHHHHHhcCcHhhhc
Confidence 9999999999999999999999999999999999999999999999999998 688999999999999999999999
Q ss_pred CCcchhhhhhccccccccccccccccccceecccccccccchhhhhhcCCChh----hhhhhccccccccccccccccCc
Q psy1907 266 PEVSQPFRSFGYLGVMQDCRYIGTYLVGFIWHWKNHYIQDQTLVTFMLTHLPT----TYIKRKSSEYKVGNGEDSFCVSP 341 (1320)
Q Consensus 266 ~~l~~~~L~~~~l~~~~~~~~~~~~~~~~il~~~~l~~~d~~~f~~~~~p~~~----~~~~~~~~L~~lG~~~~~~~v~p 341 (1320)
.++.+.+|+.|.+-..+=..|+ .+.++- +..+...+|+.. ..+++.+.||.||+.++.+|+.|
T Consensus 790 ~plhemalTikll~l~SI~~fl----------~kal~~---~p~dav~e~e~~l~~m~~ld~n~elt~lg~~la~l~iep 856 (1282)
T KOG0921|consen 790 TPLHEIALTIKLLRLGSIGEFL----------GKALQP---PPYDAVIEAEAVLREMGALDANDELTPLGRMLARLPIEP 856 (1282)
T ss_pred CccHHHHhhHHHHHhhhHHHHH----------hhccCC---CchhhccCchHHHHHhhhhhccCcccchhhhhhhccCcc
Confidence 9999999887655432211111 111111 011222222222 26778889999999999999999
Q ss_pred hhhhhhcc-cccchhHHHHHhhccccccccceeeeccCCCCCCcccccCC
Q psy1907 342 LYNLTIQS-SSFQSITIQCFASLQLHHPVIQLFTILPSSSTSSRLFTTLP 390 (1320)
Q Consensus 342 ~~~~~l~~-~~~~~l~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~~ 390 (1320)
.+|++++. ..+.|...-| ..++.+|+..+..+|-|
T Consensus 857 ~~~k~~~lg~~~g~~~~m~--------------~~as~~s~~~~~~~~~~ 892 (1282)
T KOG0921|consen 857 RIGKMMILGTALGAGSVMC--------------DVASAMSFPTPFVPREK 892 (1282)
T ss_pred cccceeeechhhccchhhh--------------hhhcccccccccccccc
Confidence 99999663 3344433333 23455566667777755
No 30
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=4e-28 Score=298.33 Aligned_cols=220 Identities=18% Similarity=0.283 Sum_probs=185.6
Q ss_pred CHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH--HHH-HhhcCCCCEEEe
Q psy1907 2 TDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA--QKF-SEFFDDAPVFRI 77 (1320)
Q Consensus 2 T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~--~~f-~~~f~~~~vi~i 77 (1320)
|||||++++....+ +++++++||||| +|+++++|..++.+++...+++.|+++||||++. ..+ ..|..++..+.+
T Consensus 157 TPGRllD~i~~~~l~l~~v~~lVlDEA-DrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v 235 (513)
T COG0513 157 TPGRLLDLIKRGKLDLSGVETLVLDEA-DRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEV 235 (513)
T ss_pred CccHHHHHHHcCCcchhhcCEEEeccH-hhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEE
Confidence 99999999988865 999999999999 5899999999999999989999999999999965 223 446666666666
Q ss_pred CC-----cccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEe
Q psy1907 78 PG-----RRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPV 152 (1320)
Q Consensus 78 ~g-----~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~L 152 (1320)
.. ....++.+|...+..+ .....+..+.....++.+|||++|+..++.++..|... ++.+..|
T Consensus 236 ~~~~~~~~~~~i~q~~~~v~~~~---~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~---------g~~~~~l 303 (513)
T COG0513 236 SVEKLERTLKKIKQFYLEVESEE---EKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR---------GFKVAAL 303 (513)
T ss_pred ccccccccccCceEEEEEeCCHH---HHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC---------CCeEEEe
Confidence 52 2245677777765443 34555666666666778999999999999999999873 7999999
Q ss_pred cCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcC
Q psy1907 153 YSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVIT 232 (1320)
Q Consensus 153 H~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAG 232 (1320)
||+|+|++|.++++.|++|..+|+||||+|+||||||+|.+||||++ |.+.++|+||+||+|
T Consensus 304 hG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~------------------p~~~e~yvHRiGRTg 365 (513)
T COG0513 304 HGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDL------------------PLDPEDYVHRIGRTG 365 (513)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccC------------------CCCHHHheeccCccc
Confidence 99999999999999999999999999999999999999999999998 566789999999999
Q ss_pred CCCCCCCceEEEEecCHH-HHhhc
Q psy1907 233 GFNPLSDFRGCAHVLGEE-VLRGC 255 (1320)
Q Consensus 233 R~g~g~~fg~~~~L~~~~-~~~~l 255 (1320)
|.|.. |.++.+++++ +...+
T Consensus 366 RaG~~---G~ai~fv~~~~e~~~l 386 (513)
T COG0513 366 RAGRK---GVAISFVTEEEEVKKL 386 (513)
T ss_pred cCCCC---CeEEEEeCcHHHHHHH
Confidence 99987 7999999864 55443
No 31
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.94 E-value=2.4e-26 Score=280.79 Aligned_cols=219 Identities=16% Similarity=0.190 Sum_probs=176.8
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH--HHHHhhc-CCCCEEE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA--QKFSEFF-DDAPVFR 76 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~--~~f~~~f-~~~~vi~ 76 (1320)
+|||+|++++..... ++++++||||||| +++++++...+...+...+++.|+++||||++. ..+...| .++..+.
T Consensus 129 ~Tp~rl~~~l~~~~~~l~~l~~lViDEad-~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~ 207 (460)
T PRK11776 129 GTPGRILDHLRKGTLDLDALNTLVLDEAD-RMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVK 207 (460)
T ss_pred EChHHHHHHHHcCCccHHHCCEEEEECHH-HHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEE
Confidence 499999999987655 9999999999998 678888887777777778888999999999954 4555544 4444454
Q ss_pred eCCc--ccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecC
Q psy1907 77 IPGR--RFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYS 154 (1320)
Q Consensus 77 i~g~--~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~ 154 (1320)
+... ...++.+|...+..+..+. +..+.....++.+||||+|+++++.+++.|.+ .++.+.++||
T Consensus 208 ~~~~~~~~~i~~~~~~~~~~~k~~~----l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~---------~~~~v~~~hg 274 (460)
T PRK11776 208 VESTHDLPAIEQRFYEVSPDERLPA----LQRLLLHHQPESCVVFCNTKKECQEVADALNA---------QGFSALALHG 274 (460)
T ss_pred ECcCCCCCCeeEEEEEeCcHHHHHH----HHHHHHhcCCCceEEEECCHHHHHHHHHHHHh---------CCCcEEEEeC
Confidence 4432 2235566655554444443 33344445578899999999999999999986 3688999999
Q ss_pred CCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCC
Q psy1907 155 NLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGF 234 (1320)
Q Consensus 155 ~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~ 234 (1320)
+|++.+|..+++.|++|..+||||||++++|||||++++|||+|+ |-+..+|.||+|||||.
T Consensus 275 ~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~------------------p~~~~~yiqR~GRtGR~ 336 (460)
T PRK11776 275 DLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYEL------------------ARDPEVHVHRIGRTGRA 336 (460)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecC------------------CCCHhHhhhhcccccCC
Confidence 999999999999999999999999999999999999999999988 55678999999999999
Q ss_pred CCCCCceEEEEecCHHHHhh
Q psy1907 235 NPLSDFRGCAHVLGEEVLRG 254 (1320)
Q Consensus 235 g~g~~fg~~~~L~~~~~~~~ 254 (1320)
|.. |.||.++++++...
T Consensus 337 g~~---G~ai~l~~~~e~~~ 353 (460)
T PRK11776 337 GSK---GLALSLVAPEEMQR 353 (460)
T ss_pred CCc---ceEEEEEchhHHHH
Confidence 876 69999999876544
No 32
>PTZ00110 helicase; Provisional
Probab=99.94 E-value=5.7e-26 Score=281.68 Aligned_cols=220 Identities=18% Similarity=0.202 Sum_probs=170.6
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH--HHHHh-hcCCCCE-E
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA--QKFSE-FFDDAPV-F 75 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~--~~f~~-~f~~~~v-i 75 (1320)
.|||+|++.+..... |+++++||||||| |++++++...+.+.+...+++.|+++||||++. +.+.+ ++...++ +
T Consensus 259 aTPgrL~d~l~~~~~~l~~v~~lViDEAd-~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i 337 (545)
T PTZ00110 259 ACPGRLIDFLESNVTNLRRVTYLVLDEAD-RMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHV 337 (545)
T ss_pred ECHHHHHHHHHcCCCChhhCcEEEeehHH-hhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEE
Confidence 499999999987654 9999999999998 788999888888877778899999999999954 44544 4443343 3
Q ss_pred EeCCc----ccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy1907 76 RIPGR----RFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILP 151 (1320)
Q Consensus 76 ~i~g~----~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~ 151 (1320)
.+... ...+...+......+....+...+..+.. ..+++|||+++++.++.++..|.. .++.+..
T Consensus 338 ~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~--~~~k~LIF~~t~~~a~~l~~~L~~---------~g~~~~~ 406 (545)
T PTZ00110 338 NVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMR--DGDKILIFVETKKGADFLTKELRL---------DGWPALC 406 (545)
T ss_pred EECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcc--cCCeEEEEecChHHHHHHHHHHHH---------cCCcEEE
Confidence 33211 11233222222223333333333222221 457899999999999999999975 3678899
Q ss_pred ecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhc
Q psy1907 152 VYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVI 231 (1320)
Q Consensus 152 LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRA 231 (1320)
+||++++++|..+++.|+.|..+||||||++++|||||+|++|||+++ |-+.++|+||+|||
T Consensus 407 ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~------------------P~s~~~yvqRiGRt 468 (545)
T PTZ00110 407 IHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDF------------------PNQIEDYVHRIGRT 468 (545)
T ss_pred EECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999988 56779999999999
Q ss_pred CCCCCCCCceEEEEecCHHHHh
Q psy1907 232 TGFNPLSDFRGCAHVLGEEVLR 253 (1320)
Q Consensus 232 GR~g~g~~fg~~~~L~~~~~~~ 253 (1320)
||.|.. |.||.++++++..
T Consensus 469 GR~G~~---G~ai~~~~~~~~~ 487 (545)
T PTZ00110 469 GRAGAK---GASYTFLTPDKYR 487 (545)
T ss_pred ccCCCC---ceEEEEECcchHH
Confidence 999875 6999999977543
No 33
>KOG0343|consensus
Probab=99.93 E-value=3.8e-26 Score=263.35 Aligned_cols=218 Identities=17% Similarity=0.242 Sum_probs=183.4
Q ss_pred CCHHHHHHHHcCCCC--CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCc--CHHHHHhh-cCCCCEE
Q psy1907 1 MTDGTLHREFLSEPD--LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL--DAQKFSEF-FDDAPVF 75 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~--Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl--~~~~f~~~-f~~~~vi 75 (1320)
|||||||++|...|. -+++.++||||| +|+++|+|--.+--++.++++.+|++|||||. .+..+++. +.++..+
T Consensus 196 CTPGRLLQHmde~~~f~t~~lQmLvLDEA-DR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~v 274 (758)
T KOG0343|consen 196 CTPGRLLQHMDENPNFSTSNLQMLVLDEA-DRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYV 274 (758)
T ss_pred echHHHHHHhhhcCCCCCCcceEEEeccH-HHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEE
Confidence 899999999999998 478999999999 69999999988888888999999999999999 55667765 3566666
Q ss_pred EeC-----CcccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEE
Q psy1907 76 RIP-----GRRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIIL 150 (1320)
Q Consensus 76 ~i~-----g~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~ 150 (1320)
.+- +.+....++|...|..+.++. ++....+....++|||++||.++..+++..++. + |++.++
T Consensus 275 svhe~a~~atP~~L~Q~y~~v~l~~Ki~~----L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl-r------pg~~l~ 343 (758)
T KOG0343|consen 275 SVHENAVAATPSNLQQSYVIVPLEDKIDM----LWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL-R------PGIPLL 343 (758)
T ss_pred EEeccccccChhhhhheEEEEehhhHHHH----HHHHHHhccccceEEEEehhhHHHHHHHHHHhc-C------CCCcee
Confidence 553 223345678888877766554 555566666778999999999999999988764 2 789999
Q ss_pred EecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhh
Q psy1907 151 PVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGV 230 (1320)
Q Consensus 151 ~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GR 230 (1320)
.|||.|.|..|..+|..|-..+--|++||||++||||+|.|++||+.++ |...++|+||+||
T Consensus 344 ~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DC------------------Pedv~tYIHRvGR 405 (758)
T KOG0343|consen 344 ALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDC------------------PEDVDTYIHRVGR 405 (758)
T ss_pred eeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecC------------------chhHHHHHHHhhh
Confidence 9999999999999999998778889999999999999999999999887 7778999999999
Q ss_pred cCCCCCCCCceEEEEecCHHH
Q psy1907 231 ITGFNPLSDFRGCAHVLGEEV 251 (1320)
Q Consensus 231 AGR~g~g~~fg~~~~L~~~~~ 251 (1320)
+.|.+.. |.|+.+.++.+
T Consensus 406 tAR~~~~---G~sll~L~psE 423 (758)
T KOG0343|consen 406 TARYKER---GESLLMLTPSE 423 (758)
T ss_pred hhcccCC---CceEEEEcchh
Confidence 9998764 57777766544
No 34
>KOG0328|consensus
Probab=99.93 E-value=9e-26 Score=242.65 Aligned_cols=220 Identities=14% Similarity=0.221 Sum_probs=175.9
Q ss_pred CHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHH--HHhhc-CCCCEEEe
Q psy1907 2 TDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQK--FSEFF-DDAPVFRI 77 (1320)
Q Consensus 2 T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~--f~~~f-~~~~vi~i 77 (1320)
|||++++.+....+ -..++.+||||||| +++-+|-..+......++|+.|++++|||++-+. ..++| .++.-+.+
T Consensus 152 tPGrv~dmikr~~L~tr~vkmlVLDEaDe-mL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilv 230 (400)
T KOG0328|consen 152 TPGRVLDMIKRRSLRTRAVKMLVLDEADE-MLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILV 230 (400)
T ss_pred CCchHHHHHHhccccccceeEEEeccHHH-HHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEE
Confidence 89999999988777 89999999999976 5666666666666666889999999999997643 33444 44433444
Q ss_pred CC--ccc-ceeEEEEcCCccc-hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEec
Q psy1907 78 PG--RRF-PVDIYYTKAPEAD-YIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVY 153 (1320)
Q Consensus 78 ~g--~~~-pV~~~y~~~~~~~-~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH 153 (1320)
.- .+. .++.+|......+ +.+. +..++.+..-...+|||+|+..++.+.+.+.+ ..+.|-++|
T Consensus 231 krdeltlEgIKqf~v~ve~EewKfdt----LcdLYd~LtItQavIFcnTk~kVdwLtekm~~---------~nftVssmH 297 (400)
T KOG0328|consen 231 KRDELTLEGIKQFFVAVEKEEWKFDT----LCDLYDTLTITQAVIFCNTKRKVDWLTEKMRE---------ANFTVSSMH 297 (400)
T ss_pred ecCCCchhhhhhheeeechhhhhHhH----HHHHhhhhehheEEEEecccchhhHHHHHHHh---------hCceeeecc
Confidence 32 222 2667887765555 3333 33333333335689999999999999999887 479999999
Q ss_pred CCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCC
Q psy1907 154 SNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITG 233 (1320)
Q Consensus 154 ~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR 233 (1320)
|+|++++|.+++..|+.|+.+|+++||+=+||+|+|.|.+||||++ |..++.|+||+||+||
T Consensus 298 GDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDL------------------P~nre~YIHRIGRSGR 359 (400)
T KOG0328|consen 298 GDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDL------------------PNNRELYIHRIGRSGR 359 (400)
T ss_pred CCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCC------------------CccHHHHhhhhccccc
Confidence 9999999999999999999999999999999999999999999998 5566889999999999
Q ss_pred CCCCCCceEEEEecCHHHHhhcc
Q psy1907 234 FNPLSDFRGCAHVLGEEVLRGCA 256 (1320)
Q Consensus 234 ~g~g~~fg~~~~L~~~~~~~~l~ 256 (1320)
.|.. |.++.+.+.++...+.
T Consensus 360 FGRk---GvainFVk~~d~~~lr 379 (400)
T KOG0328|consen 360 FGRK---GVAINFVKSDDLRILR 379 (400)
T ss_pred cCCc---ceEEEEecHHHHHHHH
Confidence 9987 7999999988776553
No 35
>KOG0342|consensus
Probab=99.93 E-value=7.8e-26 Score=259.75 Aligned_cols=218 Identities=17% Similarity=0.181 Sum_probs=175.7
Q ss_pred CHHHHHHHHcCCCC--CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH--HHHHhhc-C-CCCEE
Q psy1907 2 TDGTLHREFLSEPD--LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA--QKFSEFF-D-DAPVF 75 (1320)
Q Consensus 2 T~G~LLr~l~~d~~--Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~--~~f~~~f-~-~~~vi 75 (1320)
|||||++++.+.+. ..+.+++||||| +|.++++|-.++.+++..+++.+|.+|||||++. +.++.-- + ++..+
T Consensus 212 TPGRLlDHlqNt~~f~~r~~k~lvlDEA-DrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v 290 (543)
T KOG0342|consen 212 TPGRLLDHLQNTSGFLFRNLKCLVLDEA-DRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFV 290 (543)
T ss_pred CCchHHhHhhcCCcchhhccceeEeecc-hhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEe
Confidence 99999999999776 577789999999 5999999999999999889999999999999965 3344322 2 23344
Q ss_pred EeCCcc-----cceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEE
Q psy1907 76 RIPGRR-----FPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIIL 150 (1320)
Q Consensus 76 ~i~g~~-----~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~ 150 (1320)
.+.+.. --+++-|+..|....+-.+...+.+ .....+|+||++|+..+..++++|+. -.+.|.
T Consensus 291 ~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk---~~~~~KiiVF~sT~~~vk~~~~lL~~---------~dlpv~ 358 (543)
T KOG0342|consen 291 NVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKK---NIKRYKIIVFFSTCMSVKFHAELLNY---------IDLPVL 358 (543)
T ss_pred ecCCCCCcchhhcccceEEeccccchHHHHHHHHHH---hcCCceEEEEechhhHHHHHHHHHhh---------cCCchh
Confidence 443222 2356668777766554433333222 12126899999999999999999985 378999
Q ss_pred EecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhh
Q psy1907 151 PVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGV 230 (1320)
Q Consensus 151 ~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GR 230 (1320)
-+||+++|..|..++..|.+...-||||||||+||+|+|+|+.||++|. |....+|+||.||
T Consensus 359 eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~------------------P~d~~~YIHRvGR 420 (543)
T KOG0342|consen 359 EIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDP------------------PSDPEQYIHRVGR 420 (543)
T ss_pred hhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCC------------------CCCHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999887 5667999999999
Q ss_pred cCCCCCCCCceEEEEecCHHHHh
Q psy1907 231 ITGFNPLSDFRGCAHVLGEEVLR 253 (1320)
Q Consensus 231 AGR~g~g~~fg~~~~L~~~~~~~ 253 (1320)
+||.|.. |..+.+..+++..
T Consensus 421 TaR~gk~---G~alL~l~p~El~ 440 (543)
T KOG0342|consen 421 TAREGKE---GKALLLLAPWELG 440 (543)
T ss_pred ccccCCC---ceEEEEeChhHHH
Confidence 9998886 6888888776543
No 36
>KOG0333|consensus
Probab=99.93 E-value=8.6e-26 Score=259.69 Aligned_cols=215 Identities=16% Similarity=0.206 Sum_probs=176.3
Q ss_pred CHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCC-------------C------------CcEEE
Q psy1907 2 TDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRS-------------D------------LKLLI 55 (1320)
Q Consensus 2 T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~-------------~------------~qlIl 55 (1320)
|||+|++.+.+.-+ |++..+||+||| +|+++|+|-..+.++|...+. . +|+++
T Consensus 379 tPgrLid~Lenr~lvl~qctyvvldea-drmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~m 457 (673)
T KOG0333|consen 379 TPGRLIDSLENRYLVLNQCTYVVLDEA-DRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVM 457 (673)
T ss_pred CchHHHHHHHHHHHHhccCceEeccch-hhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEE
Confidence 99999999876655 899999999999 599999999999998876441 1 78999
Q ss_pred EecCcCH--HH-HHhhcCCCCEEEeC--Ccccc-eeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHH
Q psy1907 56 SSATLDA--QK-FSEFFDDAPVFRIP--GRRFP-VDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETC 129 (1320)
Q Consensus 56 ~SATl~~--~~-f~~~f~~~~vi~i~--g~~~p-V~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l 129 (1320)
||||+.+ +. ...||.++.++.|. |++.| |++...-.+..+....++. +........||||+|+.+.|+.+
T Consensus 458 ftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~e----il~~~~~ppiIIFvN~kk~~d~l 533 (673)
T KOG0333|consen 458 FTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIE----ILESNFDPPIIIFVNTKKGADAL 533 (673)
T ss_pred EecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHH----HHHhCCCCCEEEEEechhhHHHH
Confidence 9999965 44 45588888777775 44443 3443333344444444433 33333345699999999999999
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCC
Q psy1907 130 NEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRT 209 (1320)
Q Consensus 130 ~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~ 209 (1320)
++.|++. ++.+..|||+-.|++|+.+++.|++|+-.|+||||+|.||||||+|.+|||+++.
T Consensus 534 Ak~LeK~---------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydma--------- 595 (673)
T KOG0333|consen 534 AKILEKA---------GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMA--------- 595 (673)
T ss_pred HHHHhhc---------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchh---------
Confidence 9999984 7999999999999999999999999999999999999999999999999999983
Q ss_pred CccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHH
Q psy1907 210 GMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEV 251 (1320)
Q Consensus 210 g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~ 251 (1320)
-|...|.||+||+||+|.. |.++.|+++++
T Consensus 596 ---------ksieDYtHRIGRTgRAGk~---GtaiSflt~~d 625 (673)
T KOG0333|consen 596 ---------KSIEDYTHRIGRTGRAGKS---GTAISFLTPAD 625 (673)
T ss_pred ---------hhHHHHHHHhccccccccC---ceeEEEeccch
Confidence 4678999999999999986 79999999876
No 37
>KOG0336|consensus
Probab=99.93 E-value=6.4e-26 Score=253.20 Aligned_cols=219 Identities=16% Similarity=0.202 Sum_probs=180.0
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH--HHHHh-hcCCCCEEE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA--QKFSE-FFDDAPVFR 76 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~--~~f~~-~f~~~~vi~ 76 (1320)
+|||+|.+..+.+-. |+.+.++||||| +|+++|+|-..+-|+++..|||+|+++.|||.+. ..+++ |+.+ |++.
T Consensus 349 atPgrlndL~~~n~i~l~siTYlVlDEA-DrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Ke-p~~v 426 (629)
T KOG0336|consen 349 ATPGRLNDLQMDNVINLASITYLVLDEA-DRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKE-PMIV 426 (629)
T ss_pred eCCchHhhhhhcCeeeeeeeEEEEecch-hhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhC-ceEE
Confidence 599999999887766 999999999999 6999999999999999999999999999999954 44554 6655 4665
Q ss_pred eCCcc-----cceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy1907 77 IPGRR-----FPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILP 151 (1320)
Q Consensus 77 i~g~~-----~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~ 151 (1320)
..|.. ..|++.+......++++ .+...+.-+ .+..++|||+..+.-++.+..-+.- .++..-.
T Consensus 427 ~vGsLdL~a~~sVkQ~i~v~~d~~k~~-~~~~f~~~m--s~ndKvIiFv~~K~~AD~LSSd~~l---------~gi~~q~ 494 (629)
T KOG0336|consen 427 YVGSLDLVAVKSVKQNIIVTTDSEKLE-IVQFFVANM--SSNDKVIIFVSRKVMADHLSSDFCL---------KGISSQS 494 (629)
T ss_pred EecccceeeeeeeeeeEEecccHHHHH-HHHHHHHhc--CCCceEEEEEechhhhhhccchhhh---------cccchhh
Confidence 66643 45666665555555553 233333322 2246799999999999888777653 5899999
Q ss_pred ecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhc
Q psy1907 152 VYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVI 231 (1320)
Q Consensus 152 LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRA 231 (1320)
|||+-.|.+|+..++.|+.|.++||||||+|.||||+++|++|+||+| |-..++|+||.||+
T Consensus 495 lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDF------------------P~nIeeYVHRvGrt 556 (629)
T KOG0336|consen 495 LHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDF------------------PRNIEEYVHRVGRT 556 (629)
T ss_pred ccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCC------------------CccHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999 55678999999999
Q ss_pred CCCCCCCCceEEEEecCHHHHhh
Q psy1907 232 TGFNPLSDFRGCAHVLGEEVLRG 254 (1320)
Q Consensus 232 GR~g~g~~fg~~~~L~~~~~~~~ 254 (1320)
||+|.. |..+.+++.++...
T Consensus 557 GRaGr~---G~sis~lt~~D~~~ 576 (629)
T KOG0336|consen 557 GRAGRT---GTSISFLTRNDWSM 576 (629)
T ss_pred ccCCCC---cceEEEEehhhHHH
Confidence 999986 68899998876543
No 38
>PRK01172 ski2-like helicase; Provisional
Probab=99.93 E-value=1e-25 Score=287.29 Aligned_cols=319 Identities=14% Similarity=0.123 Sum_probs=207.1
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcc---hHHHHHHHHhhcCCCCcEEEEecCc-CHHHHHhhcCCCCEE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTD---ILFGLVKDIVRFRSDLKLLISSATL-DAQKFSEFFDDAPVF 75 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td---~ll~llk~l~~~r~~~qlIl~SATl-~~~~f~~~f~~~~vi 75 (1320)
+|||++...+..++. +.++++||+||||... +.+ .+..++..+...+++.|+|++|||+ |++.+++|++ ++.+
T Consensus 117 ~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~-d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~~~la~wl~-~~~~ 194 (674)
T PRK01172 117 LTSEKADSLIHHDPYIINDVGLIVADEIHIIG-DEDRGPTLETVLSSARYVNPDARILALSATVSNANELAQWLN-ASLI 194 (674)
T ss_pred ECHHHHHHHHhCChhHHhhcCEEEEecchhcc-CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCHHHHHHHhC-CCcc
Confidence 599998877777665 8999999999999542 222 2334445444566789999999999 8899999995 4455
Q ss_pred EeCCcccceeEEEE--cCC-----ccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCC-----
Q psy1907 76 RIPGRRFPVDIYYT--KAP-----EADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSK----- 143 (1320)
Q Consensus 76 ~i~g~~~pV~~~y~--~~~-----~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~----- 143 (1320)
....++.|+++... ... ..... .....+.... ..++++|||++|+++++.++..|.+.+.....-
T Consensus 195 ~~~~r~vpl~~~i~~~~~~~~~~~~~~~~-~~~~~i~~~~--~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~ 271 (674)
T PRK01172 195 KSNFRPVPLKLGILYRKRLILDGYERSQV-DINSLIKETV--NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSE 271 (674)
T ss_pred CCCCCCCCeEEEEEecCeeeecccccccc-cHHHHHHHHH--hCCCcEEEEeccHHHHHHHHHHHHHhhhhccccccccc
Confidence 55666677664221 110 00000 1111122211 236889999999999999999998764321100
Q ss_pred -----------CCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCcc
Q psy1907 144 -----------IKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGME 212 (1320)
Q Consensus 144 -----------~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~ 212 (1320)
.-...+..+||+|++++|..+++.|++|.++|||||+++++|+|+|+..+||+ |. +.|+.
T Consensus 272 ~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~-~~---~~~~~----- 342 (674)
T PRK01172 272 NNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVR-DI---TRYGN----- 342 (674)
T ss_pred ccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEc-Cc---eEeCC-----
Confidence 00124788999999999999999999999999999999999999999877775 32 22322
Q ss_pred ccceeccCHhhHHHHhhhcCCCCCCCCceEEEEe-cCHHHHhhcccc--cCCccccCCcchhhhhhcccccccccccccc
Q psy1907 213 SLTVVPISKASANQRAGVITGFNPLSDFRGCAHV-LGEEVLRGCAHV--LGEEVLRPEVSQPFRSFGYLGVMQDCRYIGT 289 (1320)
Q Consensus 213 ~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L-~~~~~~~~l~~~--~~pei~~~~l~~~~L~~~~l~~~~~~~~~~~ 289 (1320)
....|+|++++.||+|||||.|.+ ..|.++.+ ++.++++.+..+ ..|+...+.+... ...+.
T Consensus 343 -~~~~~~s~~~~~Qm~GRAGR~g~d-~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~-------------~~~~~ 407 (674)
T PRK01172 343 -GGIRYLSNMEIKQMIGRAGRPGYD-QYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQ-------------RKVRF 407 (674)
T ss_pred -CCceeCCHHHHHHHhhcCCCCCCC-CcceEEEEecCcccHHHHHHHHcCCCCceeecCCCc-------------ccHHH
Confidence 123589999999999999999853 13344443 333333333222 3455555555321 11122
Q ss_pred ccccceecccccccccchhh---hhhcCCC-----hhhhhhhcccc--------------ccccccccccccCchhhhhh
Q psy1907 290 YLVGFIWHWKNHYIQDQTLV---TFMLTHL-----PTTYIKRKSSE--------------YKVGNGEDSFCVSPLYNLTI 347 (1320)
Q Consensus 290 ~~~~~il~~~~l~~~d~~~f---~~~~~p~-----~~~~~~~~~~L--------------~~lG~~~~~~~v~p~~~~~l 347 (1320)
++++.|......+.+|+..| +|+.... ...+.++++.| |.||+.++..|++|..++.+
T Consensus 408 ~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~t~~~~ 487 (674)
T PRK01172 408 NTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDPESALIL 487 (674)
T ss_pred HHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCHHHHHHH
Confidence 33444555555666777776 6664432 12233444333 77788888888888888776
Q ss_pred c
Q psy1907 348 Q 348 (1320)
Q Consensus 348 ~ 348 (1320)
.
T Consensus 488 ~ 488 (674)
T PRK01172 488 K 488 (674)
T ss_pred H
Confidence 4
No 39
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.93 E-value=7.5e-25 Score=274.40 Aligned_cols=219 Identities=15% Similarity=0.183 Sum_probs=176.5
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH--HH-HHhhcCCCCEEE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA--QK-FSEFFDDAPVFR 76 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~--~~-f~~~f~~~~vi~ 76 (1320)
.|||+|++++..... |+++++|||||||+ ++++++...+...+...+++.|+++||||++. .. ...|+.++..+.
T Consensus 131 gTPgrl~d~l~r~~l~l~~l~~lVlDEAd~-ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~ 209 (629)
T PRK11634 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADE-MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVR 209 (629)
T ss_pred ECHHHHHHHHHcCCcchhhceEEEeccHHH-HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEE
Confidence 499999999988776 99999999999995 57788887777777778889999999999954 23 445666666666
Q ss_pred eCCcc---cceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEec
Q psy1907 77 IPGRR---FPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVY 153 (1320)
Q Consensus 77 i~g~~---~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH 153 (1320)
+.... ..+...|......+..+++ ..+........+||||+|+..++.+++.|.. .++.+..+|
T Consensus 210 i~~~~~~~~~i~q~~~~v~~~~k~~~L----~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~---------~g~~~~~lh 276 (629)
T PRK11634 210 IQSSVTTRPDISQSYWTVWGMRKNEAL----VRFLEAEDFDAAIIFVRTKNATLEVAEALER---------NGYNSAALN 276 (629)
T ss_pred ccCccccCCceEEEEEEechhhHHHHH----HHHHHhcCCCCEEEEeccHHHHHHHHHHHHh---------CCCCEEEee
Confidence 55432 2344455444444444433 3333344467899999999999999999986 378899999
Q ss_pred CCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCC
Q psy1907 154 SNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITG 233 (1320)
Q Consensus 154 ~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR 233 (1320)
|+|++.+|.++++.|++|+.+||||||++++|||||+|++|||+++ |.+.++|.||+|||||
T Consensus 277 gd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~------------------P~~~e~yvqRiGRtGR 338 (629)
T PRK11634 277 GDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDI------------------PMDSESYVHRIGRTGR 338 (629)
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhccccC
Confidence 9999999999999999999999999999999999999999999887 5677999999999999
Q ss_pred CCCCCCceEEEEecCHHHHhh
Q psy1907 234 FNPLSDFRGCAHVLGEEVLRG 254 (1320)
Q Consensus 234 ~g~g~~fg~~~~L~~~~~~~~ 254 (1320)
.|.. |.++.+++..+...
T Consensus 339 aGr~---G~ai~~v~~~e~~~ 356 (629)
T PRK11634 339 AGRA---GRALLFVENRERRL 356 (629)
T ss_pred CCCc---ceEEEEechHHHHH
Confidence 9885 68999988765433
No 40
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.92 E-value=7.9e-25 Score=265.67 Aligned_cols=221 Identities=18% Similarity=0.189 Sum_probs=172.5
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH---HHHHhhcCCCC-EE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA---QKFSEFFDDAP-VF 75 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~---~~f~~~f~~~~-vi 75 (1320)
.|||+|++.+..... +.++++||||||| +++++++...+.......+...|+++||||++. ..|...+.+.+ .+
T Consensus 129 ~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i 207 (434)
T PRK11192 129 ATPGRLLQYIKEENFDCRAVETLILDEAD-RMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEV 207 (434)
T ss_pred EChHHHHHHHHcCCcCcccCCEEEEECHH-HHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEE
Confidence 499999999988776 8999999999998 678888777666666666777899999999964 34555544433 33
Q ss_pred EeCCcc---cceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEe
Q psy1907 76 RIPGRR---FPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPV 152 (1320)
Q Consensus 76 ~i~g~~---~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~L 152 (1320)
.+.... ..+...|..... .......+..+......+++|||++++++++.++..|.. .++.+..+
T Consensus 208 ~~~~~~~~~~~i~~~~~~~~~---~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~---------~~~~~~~l 275 (434)
T PRK11192 208 EAEPSRRERKKIHQWYYRADD---LEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRK---------AGINCCYL 275 (434)
T ss_pred EecCCcccccCceEEEEEeCC---HHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHh---------CCCCEEEe
Confidence 332211 123333333221 223334445555554568899999999999999999976 36789999
Q ss_pred cCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcC
Q psy1907 153 YSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVIT 232 (1320)
Q Consensus 153 H~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAG 232 (1320)
||+|++.+|..+++.|++|..+||||||++++|||||+|++|||+++ |.|...|+||+||||
T Consensus 276 ~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~------------------p~s~~~yiqr~GR~g 337 (434)
T PRK11192 276 EGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDM------------------PRSADTYLHRIGRTG 337 (434)
T ss_pred cCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECC------------------CCCHHHHhhcccccc
Confidence 99999999999999999999999999999999999999999999887 567789999999999
Q ss_pred CCCCCCCceEEEEecCHHHHhhc
Q psy1907 233 GFNPLSDFRGCAHVLGEEVLRGC 255 (1320)
Q Consensus 233 R~g~g~~fg~~~~L~~~~~~~~l 255 (1320)
|.|.. |.++.+.+.+++..+
T Consensus 338 R~g~~---g~ai~l~~~~d~~~~ 357 (434)
T PRK11192 338 RAGRK---GTAISLVEAHDHLLL 357 (434)
T ss_pred cCCCC---ceEEEEecHHHHHHH
Confidence 99875 689999988776544
No 41
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.92 E-value=5.7e-25 Score=268.25 Aligned_cols=220 Identities=15% Similarity=0.174 Sum_probs=171.7
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH--HHHH-hhcCCCCEEE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA--QKFS-EFFDDAPVFR 76 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~--~~f~-~~f~~~~vi~ 76 (1320)
+|||+|++.+..... ++++++||||||| +.++.++...+...+...+++.|+++||||++. ..+. .++.++..+.
T Consensus 131 ~TP~rL~~~~~~~~~~l~~v~~lViDEah-~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~ 209 (456)
T PRK10590 131 ATPGRLLDLEHQNAVKLDQVEILVLDEAD-RMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIE 209 (456)
T ss_pred EChHHHHHHHHcCCcccccceEEEeecHH-HHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEE
Confidence 599999999877665 9999999999998 677888877777766667788999999999954 3444 4555554454
Q ss_pred eCCcc---cceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEec
Q psy1907 77 IPGRR---FPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVY 153 (1320)
Q Consensus 77 i~g~~---~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH 153 (1320)
+.... ..+..++...+.... ...+..+.......++|||++++.+++.+++.|.+ .++.+..+|
T Consensus 210 ~~~~~~~~~~i~~~~~~~~~~~k----~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~---------~g~~~~~lh 276 (456)
T PRK10590 210 VARRNTASEQVTQHVHFVDKKRK----RELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNK---------DGIRSAAIH 276 (456)
T ss_pred EecccccccceeEEEEEcCHHHH----HHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHH---------CCCCEEEEE
Confidence 43322 123333333222222 22333344444457899999999999999999976 367899999
Q ss_pred CCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCC
Q psy1907 154 SNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITG 233 (1320)
Q Consensus 154 ~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR 233 (1320)
|+|++.+|..+++.|++|..+||||||++++|||||+|++|||+++ |.+..+|+||+|||||
T Consensus 277 g~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~------------------P~~~~~yvqR~GRaGR 338 (456)
T PRK10590 277 GNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYEL------------------PNVPEDYVHRIGRTGR 338 (456)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCC------------------CCCHHHhhhhcccccc
Confidence 9999999999999999999999999999999999999999999987 5677899999999999
Q ss_pred CCCCCCceEEEEecCHHHHhhc
Q psy1907 234 FNPLSDFRGCAHVLGEEVLRGC 255 (1320)
Q Consensus 234 ~g~g~~fg~~~~L~~~~~~~~l 255 (1320)
.|.. |.|+.+++.++...+
T Consensus 339 ~g~~---G~ai~l~~~~d~~~~ 357 (456)
T PRK10590 339 AAAT---GEALSLVCVDEHKLL 357 (456)
T ss_pred CCCC---eeEEEEecHHHHHHH
Confidence 9876 689999987765443
No 42
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=5.8e-25 Score=265.94 Aligned_cols=220 Identities=14% Similarity=0.106 Sum_probs=167.8
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcC--CCCcEEEEecCcCHH--H-HHhhcCCCCE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFR--SDLKLLISSATLDAQ--K-FSEFFDDAPV 74 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r--~~~qlIl~SATl~~~--~-f~~~f~~~~v 74 (1320)
+|||+|++.+..... ++++++||||||| +.++.++...+...+...+ +..+.++||||++.. . ...+++++..
T Consensus 139 ~TP~~l~~~l~~~~~~l~~v~~lViDEad-~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~ 217 (423)
T PRK04837 139 GTTGRLIDYAKQNHINLGAIQVVVLDEAD-RMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEY 217 (423)
T ss_pred ECHHHHHHHHHcCCcccccccEEEEecHH-HHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEE
Confidence 599999999876554 9999999999998 5677777666654444444 346679999999643 2 3346666655
Q ss_pred EEeCCcc---cceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy1907 75 FRIPGRR---FPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILP 151 (1320)
Q Consensus 75 i~i~g~~---~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~ 151 (1320)
+.+.... ..+...+......+. ...+..+.....++++|||++++..++.++..|.. .++.+..
T Consensus 218 i~v~~~~~~~~~i~~~~~~~~~~~k----~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~---------~g~~v~~ 284 (423)
T PRK04837 218 VEVEPEQKTGHRIKEELFYPSNEEK----MRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAA---------DGHRVGL 284 (423)
T ss_pred EEEcCCCcCCCceeEEEEeCCHHHH----HHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHh---------CCCcEEE
Confidence 5554322 122222222222222 33344444444568899999999999999999976 3788999
Q ss_pred ecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhc
Q psy1907 152 VYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVI 231 (1320)
Q Consensus 152 LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRA 231 (1320)
+||+|++++|..+++.|++|..+||||||++++|||||+|++|||+++ |.+.++|.||+|||
T Consensus 285 lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~------------------P~s~~~yiqR~GR~ 346 (423)
T PRK04837 285 LTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDL------------------PDDCEDYVHRIGRT 346 (423)
T ss_pred ecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCC------------------CCchhheEeccccc
Confidence 999999999999999999999999999999999999999999999988 55778999999999
Q ss_pred CCCCCCCCceEEEEecCHHHHhhc
Q psy1907 232 TGFNPLSDFRGCAHVLGEEVLRGC 255 (1320)
Q Consensus 232 GR~g~g~~fg~~~~L~~~~~~~~l 255 (1320)
||.|.. |.|+.++++++...+
T Consensus 347 gR~G~~---G~ai~~~~~~~~~~~ 367 (423)
T PRK04837 347 GRAGAS---GHSISLACEEYALNL 367 (423)
T ss_pred cCCCCC---eeEEEEeCHHHHHHH
Confidence 999976 799999998765443
No 43
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.92 E-value=8.3e-25 Score=270.33 Aligned_cols=220 Identities=14% Similarity=0.097 Sum_probs=165.3
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH--HHHHhhcCCCCE-EE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA--QKFSEFFDDAPV-FR 76 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~--~~f~~~f~~~~v-i~ 76 (1320)
.|||+|++.+..... ++++++||||||| ++++.++...+.+.+... ++.|+++||||++. +.+...+...++ +.
T Consensus 252 ~TPgrL~~~l~~~~~~l~~v~~lViDEad-~ml~~gf~~~i~~i~~~l-~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~ 329 (518)
T PLN00206 252 GTPGRLIDLLSKHDIELDNVSVLVLDEVD-CMLERGFRDQVMQIFQAL-SQPQVLLFSATVSPEVEKFASSLAKDIILIS 329 (518)
T ss_pred ECHHHHHHHHHcCCccchheeEEEeecHH-HHhhcchHHHHHHHHHhC-CCCcEEEEEeeCCHHHHHHHHHhCCCCEEEE
Confidence 499999999876554 9999999999998 567777665554444333 57899999999954 567666654443 44
Q ss_pred eCCccc---ceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEec
Q psy1907 77 IPGRRF---PVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVY 153 (1320)
Q Consensus 77 i~g~~~---pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH 153 (1320)
+..... .+...+......+....+...+... ....+.+|||++++..++.++..|... .++.+..+|
T Consensus 330 ~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~--~~~~~~~iVFv~s~~~a~~l~~~L~~~--------~g~~~~~~H 399 (518)
T PLN00206 330 IGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSK--QHFKPPAVVFVSSRLGADLLANAITVV--------TGLKALSIH 399 (518)
T ss_pred eCCCCCCCcceeEEEEeccchhHHHHHHHHHHhh--cccCCCEEEEcCCchhHHHHHHHHhhc--------cCcceEEee
Confidence 332211 2333333333333322222222111 112357999999999999999988653 367899999
Q ss_pred CCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCC
Q psy1907 154 SNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITG 233 (1320)
Q Consensus 154 ~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR 233 (1320)
|+|++.+|..+++.|+.|..+||||||++++|||||+|++||++|+ |.+..+|+||+|||||
T Consensus 400 g~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~------------------P~s~~~yihRiGRaGR 461 (518)
T PLN00206 400 GEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDM------------------PNTIKEYIHQIGRASR 461 (518)
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCC------------------CCCHHHHHHhcccccc
Confidence 9999999999999999999999999999999999999999999987 6688999999999999
Q ss_pred CCCCCCceEEEEecCHHHHh
Q psy1907 234 FNPLSDFRGCAHVLGEEVLR 253 (1320)
Q Consensus 234 ~g~g~~fg~~~~L~~~~~~~ 253 (1320)
.|.. |.++.+++.++..
T Consensus 462 ~g~~---G~ai~f~~~~~~~ 478 (518)
T PLN00206 462 MGEK---GTAIVFVNEEDRN 478 (518)
T ss_pred CCCC---eEEEEEEchhHHH
Confidence 9875 6999999987644
No 44
>KOG0340|consensus
Probab=99.92 E-value=1.2e-24 Score=240.98 Aligned_cols=221 Identities=19% Similarity=0.235 Sum_probs=170.8
Q ss_pred CCHHHHHHHHcCCC-----CCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhcCCCCE-
Q psy1907 1 MTDGTLHREFLSEP-----DLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFFDDAPV- 74 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~-----~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~~~~v- 74 (1320)
+|||+|.+++.+++ .+.+++++||||| +|.++.+|-..|--.....++.+|.++||||++.. +++.|+ +|+
T Consensus 131 atPGRlad~l~sn~~~~~~~~~rlkflVlDEA-DrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~-i~ql~~-~~i~ 207 (442)
T KOG0340|consen 131 ATPGRLADHLSSNLGVCSWIFQRLKFLVLDEA-DRVLAGCFPDILEGIEECLPKPRQTLLFSATITDT-IKQLFG-CPIT 207 (442)
T ss_pred cCccccccccccCCccchhhhhceeeEEecch-hhhhccchhhHHhhhhccCCCccceEEEEeehhhH-HHHhhc-CCcc
Confidence 69999999999873 2899999999999 59999887766655556678889999999999432 333332 211
Q ss_pred ------EE-eCCcccc--eeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy1907 75 ------FR-IPGRRFP--VDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIK 145 (1320)
Q Consensus 75 ------i~-i~g~~~p--V~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~ 145 (1320)
.. ++|...+ ..+.|+..+.. -.++.+.-++....+++.++|+||++++.+++.++.+|.. .
T Consensus 208 k~~a~~~e~~~~vstvetL~q~yI~~~~~-vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~---------l 277 (442)
T KOG0340|consen 208 KSIAFELEVIDGVSTVETLYQGYILVSID-VKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKN---------L 277 (442)
T ss_pred cccceEEeccCCCCchhhhhhheeecchh-hhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhh---------h
Confidence 11 1222111 22334444332 2234444444455555689999999999999999999987 3
Q ss_pred CeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHH
Q psy1907 146 ELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASAN 225 (1320)
Q Consensus 146 ~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~ 225 (1320)
++.+..|||-|+|.+|...+..|+++..+||||||+|+||+|||.|+.|||+++ |-.+..|+
T Consensus 278 e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~di------------------Pr~P~~yi 339 (442)
T KOG0340|consen 278 EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDI------------------PRDPKDYI 339 (442)
T ss_pred ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCC------------------CCCHHHHH
Confidence 899999999999999999999999999999999999999999999999999998 44557889
Q ss_pred HHhhhcCCCCCCCCceEEEEecCHHHHhhc
Q psy1907 226 QRAGVITGFNPLSDFRGCAHVLGEEVLRGC 255 (1320)
Q Consensus 226 QR~GRAGR~g~g~~fg~~~~L~~~~~~~~l 255 (1320)
||.||+.|+|.+ |..+.+.++.+.+.+
T Consensus 340 HRvGRtARAGR~---G~aiSivt~rDv~l~ 366 (442)
T KOG0340|consen 340 HRVGRTARAGRK---GMAISIVTQRDVELL 366 (442)
T ss_pred HhhcchhcccCC---cceEEEechhhHHHH
Confidence 999999999887 789999997766544
No 45
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.91 E-value=3.1e-24 Score=267.27 Aligned_cols=220 Identities=15% Similarity=0.195 Sum_probs=166.6
Q ss_pred CCHHHHHHHHcCCC--CCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCC--CCcEEEEecCcCH---HHHHhhcCCCC
Q psy1907 1 MTDGTLHREFLSEP--DLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRS--DLKLLISSATLDA---QKFSEFFDDAP 73 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~--~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~--~~qlIl~SATl~~---~~f~~~f~~~~ 73 (1320)
.|||+|++.+.... .++.+++||||||| ++++.++...+...+...+. +.|+++||||++. +....++.++.
T Consensus 140 ~TP~rL~~~l~~~~~~~l~~v~~lViDEAh-~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~ 218 (572)
T PRK04537 140 ATPGRLIDYVKQHKVVSLHACEICVLDEAD-RMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPE 218 (572)
T ss_pred ECHHHHHHHHHhccccchhheeeeEecCHH-HHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCc
Confidence 49999999987654 38899999999998 45666666555444444443 6899999999964 22344555544
Q ss_pred EEEeCCccc---ceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEE
Q psy1907 74 VFRIPGRRF---PVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIIL 150 (1320)
Q Consensus 74 vi~i~g~~~---pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~ 150 (1320)
.+.+..... .+...+......+. +..+..+.......++|||++|+..++.+++.|.+ .++.+.
T Consensus 219 ~i~v~~~~~~~~~i~q~~~~~~~~~k----~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~---------~g~~v~ 285 (572)
T PRK04537 219 KLVVETETITAARVRQRIYFPADEEK----QTLLLGLLSRSEGARTMVFVNTKAFVERVARTLER---------HGYRVG 285 (572)
T ss_pred EEEeccccccccceeEEEEecCHHHH----HHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHH---------cCCCEE
Confidence 444433221 22333333222222 33344444445567899999999999999999976 367899
Q ss_pred EecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhh
Q psy1907 151 PVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGV 230 (1320)
Q Consensus 151 ~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GR 230 (1320)
.+||+|++.+|.++++.|++|..+||||||++++|||||+|++|||+++ |.+.++|+||+||
T Consensus 286 ~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~------------------P~s~~~yvqRiGR 347 (572)
T PRK04537 286 VLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDL------------------PFDAEDYVHRIGR 347 (572)
T ss_pred EEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCC------------------CCCHHHHhhhhcc
Confidence 9999999999999999999999999999999999999999999999987 6678999999999
Q ss_pred cCCCCCCCCceEEEEecCHHHHhhc
Q psy1907 231 ITGFNPLSDFRGCAHVLGEEVLRGC 255 (1320)
Q Consensus 231 AGR~g~g~~fg~~~~L~~~~~~~~l 255 (1320)
|||.|.. |.|+.|+++.+...+
T Consensus 348 aGR~G~~---G~ai~~~~~~~~~~l 369 (572)
T PRK04537 348 TARLGEE---GDAISFACERYAMSL 369 (572)
T ss_pred cccCCCC---ceEEEEecHHHHHHH
Confidence 9999886 699999987654433
No 46
>PRK02362 ski2-like helicase; Provisional
Probab=99.91 E-value=3.2e-24 Score=275.59 Aligned_cols=343 Identities=15% Similarity=0.116 Sum_probs=218.1
Q ss_pred CCHHHHHHHHcCC-CCCCCccEEEEeCCCccCcCcch---HHHHHHHHhhcCCCCcEEEEecCc-CHHHHHhhcCCCCEE
Q psy1907 1 MTDGTLHREFLSE-PDLASYSVMIIDEAHERTLHTDI---LFGLVKDIVRFRSDLKLLISSATL-DAQKFSEFFDDAPVF 75 (1320)
Q Consensus 1 ~T~G~LLr~l~~d-~~Ls~~s~iVLDEaHeR~l~td~---ll~llk~l~~~r~~~qlIl~SATl-~~~~f~~~f~~~~vi 75 (1320)
+||+++...+.+. .+++++++||+||||. ..+.+. +..++..+....++.|+|++|||+ |++.+++|++.. .+
T Consensus 119 ~Tpek~~~llr~~~~~l~~v~lvViDE~H~-l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~-~~ 196 (737)
T PRK02362 119 ATSEKVDSLLRNGAPWLDDITCVVVDEVHL-IDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAE-LV 196 (737)
T ss_pred ECHHHHHHHHhcChhhhhhcCEEEEECccc-cCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCC-cc
Confidence 5999987766554 3489999999999993 222222 233344444456789999999999 888999998643 22
Q ss_pred EeCCcccceeEE--E------Ec----CCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHh----
Q psy1907 76 RIPGRRFPVDIY--Y------TK----APEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRR---- 139 (1320)
Q Consensus 76 ~i~g~~~pV~~~--y------~~----~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~---- 139 (1320)
....++.|+... + .. .+.... +..+..+..... ..+++|||++|+.+++.++..|......
T Consensus 197 ~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~ 273 (737)
T PRK02362 197 DSEWRPIDLREGVFYGGAIHFDDSQREVEVPSK-DDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTA 273 (737)
T ss_pred cCCCCCCCCeeeEecCCeeccccccccCCCccc-hHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCH
Confidence 222233333221 1 00 000001 223333333332 3688999999999999999998765321
Q ss_pred ------------hcCCC-----------CCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEc
Q psy1907 140 ------------LGSKI-----------KELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVID 196 (1320)
Q Consensus 140 ------------l~~~~-----------~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID 196 (1320)
+.... -...+..+||+|++++|..+++.|++|.++|||||+++++|||+|++++||+
T Consensus 274 ~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~ 353 (737)
T PRK02362 274 AERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIR 353 (737)
T ss_pred HHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEe
Confidence 00000 0135888999999999999999999999999999999999999999999996
Q ss_pred CCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHH-HHhhc-ccc--cCCccccCCcchhh
Q psy1907 197 PGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEE-VLRGC-AHV--LGEEVLRPEVSQPF 272 (1320)
Q Consensus 197 ~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~-~~~~l-~~~--~~pei~~~~l~~~~ 272 (1320)
. ...||+..| ..|++..+|.||+|||||.|.+ .+|.|+.+.... +...+ ..+ ..|+...+.+..
T Consensus 354 ~----~~~yd~~~g-----~~~~s~~~y~Qm~GRAGR~g~d-~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~-- 421 (737)
T PRK02362 354 D----YRRYDGGAG-----MQPIPVLEYHQMAGRAGRPGLD-PYGEAVLLAKSYDELDELFERYIWADPEDVRSKLAT-- 421 (737)
T ss_pred c----ceeecCCCC-----ceeCCHHHHHHHhhcCCCCCCC-CCceEEEEecCchhHHHHHHHHHhCCCCceeecCCC--
Confidence 4 335766544 3599999999999999999875 357899888643 22221 111 345555555521
Q ss_pred hhhccccccccccccccccccceecccccccccchhh---hhhcCCChh------hhhhhcccc---------------c
Q psy1907 273 RSFGYLGVMQDCRYIGTYLVGFIWHWKNHYIQDQTLV---TFMLTHLPT------TYIKRKSSE---------------Y 328 (1320)
Q Consensus 273 L~~~~l~~~~~~~~~~~~~~~~il~~~~l~~~d~~~f---~~~~~p~~~------~~~~~~~~L---------------~ 328 (1320)
...++.++++.|........+|+..| +|+..+... .+.++++.| |
T Consensus 422 -----------~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t 490 (737)
T PRK02362 422 -----------EPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDGETLEAT 490 (737)
T ss_pred -----------hhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecCCeEeEC
Confidence 11233344455555445555566555 565555322 133333333 7
Q ss_pred cccccccccccCchhhhhhccc--ccchhHHHHHhhccccccccc
Q psy1907 329 KVGNGEDSFCVSPLYNLTIQSS--SFQSITIQCFASLQLHHPVIQ 371 (1320)
Q Consensus 329 ~lG~~~~~~~v~p~~~~~l~~~--~~~~l~~~~~~~~~~~~p~~~ 371 (1320)
.||..++..+++|..+..+... .-...+...+|++.+.+|.++
T Consensus 491 ~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~e~~ 535 (737)
T PRK02362 491 ELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTPDMY 535 (737)
T ss_pred hHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhcCcccc
Confidence 7788888899999888776522 111134455555555555544
No 47
>KOG0338|consensus
Probab=99.91 E-value=9.4e-25 Score=250.08 Aligned_cols=218 Identities=17% Similarity=0.225 Sum_probs=162.8
Q ss_pred CHHHHHHHHcCCCC--CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH--HHHHhhcCCCCE-EE
Q psy1907 2 TDGTLHREFLSEPD--LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA--QKFSEFFDDAPV-FR 76 (1320)
Q Consensus 2 T~G~LLr~l~~d~~--Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~--~~f~~~f~~~~v-i~ 76 (1320)
|||||+++|.+.|. |+++.++||||| +|+++.+|--.+-.++...++++|++||||||.. +.+...--+-|+ +.
T Consensus 309 TPGRlIDHlrNs~sf~ldsiEVLvlDEA-DRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrif 387 (691)
T KOG0338|consen 309 TPGRLIDHLRNSPSFNLDSIEVLVLDEA-DRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIF 387 (691)
T ss_pred cchhHHHHhccCCCccccceeEEEechH-HHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEE
Confidence 99999999999986 899999999999 6999998877666666667788999999999943 445553333333 22
Q ss_pred eCCc-c-cc-eeEEEEc-CCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEe
Q psy1907 77 IPGR-R-FP-VDIYYTK-APEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPV 152 (1320)
Q Consensus 77 i~g~-~-~p-V~~~y~~-~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~L 152 (1320)
+... . .| ..+.|+. .|..+-...++ |..+........++||+.|++.+..+.-+|-= .++.+.-|
T Consensus 388 vd~~~~~a~~LtQEFiRIR~~re~dRea~--l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGL---------lgl~agEl 456 (691)
T KOG0338|consen 388 VDPNKDTAPKLTQEFIRIRPKREGDREAM--LASLITRTFQDRTIVFVRTKKQAHRLRILLGL---------LGLKAGEL 456 (691)
T ss_pred eCCccccchhhhHHHheeccccccccHHH--HHHHHHHhcccceEEEEehHHHHHHHHHHHHH---------hhchhhhh
Confidence 2221 1 11 1122221 11111111111 11222222246799999999999987766542 47889999
Q ss_pred cCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcC
Q psy1907 153 YSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVIT 232 (1320)
Q Consensus 153 H~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAG 232 (1320)
||+|+|++|...++.|+.+.+.||||||+|+|||||+||..||||.+ |.|...|+||.||+.
T Consensus 457 HGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~m------------------P~t~e~Y~HRVGRTA 518 (691)
T KOG0338|consen 457 HGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAM------------------PKTIEHYLHRVGRTA 518 (691)
T ss_pred cccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccC------------------chhHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999987 778899999999999
Q ss_pred CCCCCCCceEEEEecCHHHH
Q psy1907 233 GFNPLSDFRGCAHVLGEEVL 252 (1320)
Q Consensus 233 R~g~g~~fg~~~~L~~~~~~ 252 (1320)
|.|.. |..+.|.++.+-
T Consensus 519 RAGRa---GrsVtlvgE~dR 535 (691)
T KOG0338|consen 519 RAGRA---GRSVTLVGESDR 535 (691)
T ss_pred hcccC---cceEEEeccccH
Confidence 99886 678888887643
No 48
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.91 E-value=8.1e-24 Score=259.58 Aligned_cols=217 Identities=19% Similarity=0.225 Sum_probs=162.7
Q ss_pred CCHHHHHHHHcCCC-CCCCccEEEEeCCCccCcCcchHHHHHHHHhhcC--CCCcEEEEecCcCH--HHHHh-hcCCCCE
Q psy1907 1 MTDGTLHREFLSEP-DLASYSVMIIDEAHERTLHTDILFGLVKDIVRFR--SDLKLLISSATLDA--QKFSE-FFDDAPV 74 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~-~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r--~~~qlIl~SATl~~--~~f~~-~f~~~~v 74 (1320)
.|||+|++.+.... .|+++++|||||||. .++.++...+.+.+...+ .+.|+|++|||++. ..+.+ |..++.+
T Consensus 219 ~TP~~Ll~~~~~~~~~l~~l~~lViDEah~-l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~ 297 (475)
T PRK01297 219 ATPGRLLDFNQRGEVHLDMVEVMVLDEADR-MLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAI 297 (475)
T ss_pred ECHHHHHHHHHcCCcccccCceEEechHHH-HHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEE
Confidence 49999998876544 489999999999984 455555544444433332 35799999999943 33444 5555545
Q ss_pred EEeCCccc---ceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy1907 75 FRIPGRRF---PVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILP 151 (1320)
Q Consensus 75 i~i~g~~~---pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~ 151 (1320)
+.+..... .+..++......+.. ..+..+......+++|||++++++++.++..|.. .++.+..
T Consensus 298 v~~~~~~~~~~~~~~~~~~~~~~~k~----~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~---------~~~~~~~ 364 (475)
T PRK01297 298 VEIEPENVASDTVEQHVYAVAGSDKY----KLLYNLVTQNPWERVMVFANRKDEVRRIEERLVK---------DGINAAQ 364 (475)
T ss_pred EEeccCcCCCCcccEEEEEecchhHH----HHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHH---------cCCCEEE
Confidence 54433221 233333332333322 2333444444456899999999999999998865 3678899
Q ss_pred ecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhc
Q psy1907 152 VYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVI 231 (1320)
Q Consensus 152 LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRA 231 (1320)
+||++++++|.++++.|++|..+||||||++++|||||+|++||++|+ |.|.++|+||+|||
T Consensus 365 ~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~------------------P~s~~~y~Qr~GRa 426 (475)
T PRK01297 365 LSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTL------------------PEDPDDYVHRIGRT 426 (475)
T ss_pred EECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCC------------------CCCHHHHHHhhCcc
Confidence 999999999999999999999999999999999999999999999988 67889999999999
Q ss_pred CCCCCCCCceEEEEecCHHHH
Q psy1907 232 TGFNPLSDFRGCAHVLGEEVL 252 (1320)
Q Consensus 232 GR~g~g~~fg~~~~L~~~~~~ 252 (1320)
||.|.. |.++.++++++.
T Consensus 427 GR~g~~---g~~i~~~~~~d~ 444 (475)
T PRK01297 427 GRAGAS---GVSISFAGEDDA 444 (475)
T ss_pred CCCCCC---ceEEEEecHHHH
Confidence 999986 689999997654
No 49
>KOG0339|consensus
Probab=99.91 E-value=5.5e-24 Score=243.27 Aligned_cols=219 Identities=18% Similarity=0.199 Sum_probs=175.4
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCc--CHHHHHhhcCCCCEEEe
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL--DAQKFSEFFDDAPVFRI 77 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl--~~~~f~~~f~~~~vi~i 77 (1320)
+|||||++++.-... |++++++||||| +|+.+++|...+-.+..+.++++|.++||||+ ..+++++-|-..||-.+
T Consensus 352 aTPgRlid~VkmKatn~~rvS~LV~DEa-drmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvV 430 (731)
T KOG0339|consen 352 ATPGRLIDMVKMKATNLSRVSYLVLDEA-DRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVV 430 (731)
T ss_pred echHHHHHHHHhhcccceeeeEEEEech-hhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEE
Confidence 699999999966554 999999999999 69999999998888888899999999999999 45677665555556555
Q ss_pred CCc----ccceeE-EEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEe
Q psy1907 78 PGR----RFPVDI-YYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPV 152 (1320)
Q Consensus 78 ~g~----~~pV~~-~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~L 152 (1320)
.|. ..-+.+ .+.-.....++.-++.- +......|++|||++...+++++...|.- .++.+..+
T Consensus 431 qg~vgean~dITQ~V~V~~s~~~Kl~wl~~~---L~~f~S~gkvlifVTKk~~~e~i~a~Lkl---------k~~~v~ll 498 (731)
T KOG0339|consen 431 QGEVGEANEDITQTVSVCPSEEKKLNWLLRH---LVEFSSEGKVLIFVTKKADAEEIAANLKL---------KGFNVSLL 498 (731)
T ss_pred EeehhccccchhheeeeccCcHHHHHHHHHH---hhhhccCCcEEEEEeccCCHHHHHHHhcc---------ccceeeee
Confidence 442 111221 22222233344433332 32333368999999999999999998864 58999999
Q ss_pred cCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcC
Q psy1907 153 YSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVIT 232 (1320)
Q Consensus 153 H~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAG 232 (1320)
||+|.|.+|.+++..|+.+...|++|||+|+||+||+++.-|||+++-+ +.+.+.||+||+|
T Consensus 499 hgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ar------------------dIdththrigrtg 560 (731)
T KOG0339|consen 499 HGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFAR------------------DIDTHTHRIGRTG 560 (731)
T ss_pred cCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccc------------------hhHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999832 4577899999999
Q ss_pred CCCCCCCceEEEEecCHHHHh
Q psy1907 233 GFNPLSDFRGCAHVLGEEVLR 253 (1320)
Q Consensus 233 R~g~g~~fg~~~~L~~~~~~~ 253 (1320)
|.|.. |+.|.|.|+.+-+
T Consensus 561 Rag~k---GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 561 RAGEK---GVAYTLVTEKDAE 578 (731)
T ss_pred ccccc---ceeeEEechhhHH
Confidence 99986 7999999988654
No 50
>PTZ00424 helicase 45; Provisional
Probab=99.91 E-value=7.6e-24 Score=254.26 Aligned_cols=221 Identities=12% Similarity=0.226 Sum_probs=167.7
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHH--HH-HhhcCCCCEEE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQ--KF-SEFFDDAPVFR 76 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~--~f-~~~f~~~~vi~ 76 (1320)
.|||+|++.+..... ++++++||+||||. .++.++...+.+.+.+.+++.|+|++|||++.+ .+ ..|+.++..+.
T Consensus 152 ~Tp~~l~~~l~~~~~~l~~i~lvViDEah~-~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 230 (401)
T PTZ00424 152 GTPGRVYDMIDKRHLRVDDLKLFILDEADE-MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRIL 230 (401)
T ss_pred ECcHHHHHHHHhCCcccccccEEEEecHHH-HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEE
Confidence 499999999887665 89999999999993 344444444445555567889999999999543 23 33444444444
Q ss_pred eCCcc---cceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEec
Q psy1907 77 IPGRR---FPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVY 153 (1320)
Q Consensus 77 i~g~~---~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH 153 (1320)
+.... ..+..+|...+..++. ...+..+......+++|||++|++.++.++..|.+ .++.+..+|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~---------~~~~~~~~h 298 (401)
T PTZ00424 231 VKKDELTLEGIRQFYVAVEKEEWK---FDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHE---------RDFTVSCMH 298 (401)
T ss_pred eCCCCcccCCceEEEEecChHHHH---HHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHH---------CCCcEEEEe
Confidence 43322 2234455444332222 22333344444457899999999999999998876 367899999
Q ss_pred CCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCC
Q psy1907 154 SNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITG 233 (1320)
Q Consensus 154 ~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR 233 (1320)
|+|++.+|..+++.|++|..+|||||+++++|||+|++++||++|+ |.|..+|.||+|||||
T Consensus 299 ~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~------------------p~s~~~y~qr~GRagR 360 (401)
T PTZ00424 299 GDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDL------------------PASPENYIHRIGRSGR 360 (401)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECC------------------CCCHHHEeeccccccc
Confidence 9999999999999999999999999999999999999999999886 5678999999999999
Q ss_pred CCCCCCceEEEEecCHHHHhhc
Q psy1907 234 FNPLSDFRGCAHVLGEEVLRGC 255 (1320)
Q Consensus 234 ~g~g~~fg~~~~L~~~~~~~~l 255 (1320)
.|.. |.|+.++++++...+
T Consensus 361 ~g~~---G~~i~l~~~~~~~~~ 379 (401)
T PTZ00424 361 FGRK---GVAINFVTPDDIEQL 379 (401)
T ss_pred CCCC---ceEEEEEcHHHHHHH
Confidence 9865 699999998876554
No 51
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.90 E-value=2.8e-23 Score=264.92 Aligned_cols=224 Identities=17% Similarity=0.151 Sum_probs=158.6
Q ss_pred CCHHHHHHHHcCC-----CCCCCccEEEEeCCCccCcCcch---HHHHHHHH---hh-cCCCCcEEEEecCc-CHHHHHh
Q psy1907 1 MTDGTLHREFLSE-----PDLASYSVMIIDEAHERTLHTDI---LFGLVKDI---VR-FRSDLKLLISSATL-DAQKFSE 67 (1320)
Q Consensus 1 ~T~G~LLr~l~~d-----~~Ls~~s~iVLDEaHeR~l~td~---ll~llk~l---~~-~r~~~qlIl~SATl-~~~~f~~ 67 (1320)
.||++|...++.+ ..|+++++|||||||.. .. .+ +..+++.+ .. ...+.|+|++|||+ ++..+.+
T Consensus 135 tTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~-~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~ 212 (742)
T TIGR03817 135 TNPDMLHRGILPSHARWARFLRRLRYVVIDECHSY-RG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAAS 212 (742)
T ss_pred EChHHHHHhhccchhHHHHHHhcCCEEEEeChhhc-cC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHH
Confidence 3899988666532 23899999999999952 22 12 12233333 22 34678999999999 6666666
Q ss_pred hcCCCCEEEeCCcccc---eeEEEEcCCc------------cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHH
Q psy1907 68 FFDDAPVFRIPGRRFP---VDIYYTKAPE------------ADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEI 132 (1320)
Q Consensus 68 ~f~~~~vi~i~g~~~p---V~~~y~~~~~------------~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~ 132 (1320)
.+.+.++..+.....| ....+...+. ..........+..+... ..++|||++|++.++.++..
T Consensus 213 ~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~ 290 (742)
T TIGR03817 213 RLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAI 290 (742)
T ss_pred HHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHH
Confidence 5555555555432222 2222222110 01112233333333332 47899999999999999999
Q ss_pred HHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCcc
Q psy1907 133 LQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGME 212 (1320)
Q Consensus 133 L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~ 212 (1320)
|.+.+...... .+..+..+||++.+++|.++++.|++|+.+||||||++|+||||++|++||++|+
T Consensus 291 l~~~l~~~~~~-l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~------------- 356 (742)
T TIGR03817 291 ARRLLGEVDPD-LAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGF------------- 356 (742)
T ss_pred HHHHHHhhccc-cccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCC-------------
Confidence 98754332211 2457889999999999999999999999999999999999999999999999987
Q ss_pred ccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHH
Q psy1907 213 SLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 213 ~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~ 250 (1320)
|-+.++|+||+|||||.|.+ |.++.+.+++
T Consensus 357 -----P~s~~~y~qRiGRaGR~G~~---g~ai~v~~~~ 386 (742)
T TIGR03817 357 -----PGTRASLWQQAGRAGRRGQG---ALVVLVARDD 386 (742)
T ss_pred -----CCCHHHHHHhccccCCCCCC---cEEEEEeCCC
Confidence 66889999999999999887 6888888643
No 52
>KOG0335|consensus
Probab=99.90 E-value=8.8e-24 Score=247.33 Aligned_cols=218 Identities=17% Similarity=0.160 Sum_probs=173.3
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcC-cchHHHHHHHHhhcC----CCCcEEEEecCcCH--HHHHhhcC-C
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLH-TDILFGLVKDIVRFR----SDLKLLISSATLDA--QKFSEFFD-D 71 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~-td~ll~llk~l~~~r----~~~qlIl~SATl~~--~~f~~~f~-~ 71 (1320)
+|||+|.+.+..... |++..++||||| +|+++ ++|...+-+++.... ..+|.++||||.+. ..++.+|- +
T Consensus 208 aTpGrL~d~~e~g~i~l~~~k~~vLDEA-DrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~ 286 (482)
T KOG0335|consen 208 ATPGRLKDLIERGKISLDNCKFLVLDEA-DRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKD 286 (482)
T ss_pred ecCchhhhhhhcceeehhhCcEEEecch-HHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhc
Confidence 599999999987766 999999999999 59999 999988888876632 36899999999954 44555552 2
Q ss_pred -CCEEEe--CC-cccceeEEEEcCCccchHHHHHHHHHHHHhhCCCC-----CEEEEcCCHHHHHHHHHHHHHHHHhhcC
Q psy1907 72 -APVFRI--PG-RRFPVDIYYTKAPEADYIDACVVSILQIHATQPLG-----DILVFLTGQEEIETCNEILQDRVRRLGS 142 (1320)
Q Consensus 72 -~~vi~i--~g-~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g-----~iLVFl~t~~eie~l~~~L~~~~~~l~~ 142 (1320)
-..+.| .| ..-.+..........++...++.++.........+ .+|||+.|.+.++.+...|..
T Consensus 287 ~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~------- 359 (482)
T KOG0335|consen 287 NYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSS------- 359 (482)
T ss_pred cceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhc-------
Confidence 223322 23 33345555555555566666555544333221234 799999999999999999986
Q ss_pred CCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHh
Q psy1907 143 KIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKA 222 (1320)
Q Consensus 143 ~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~ 222 (1320)
.++...++||...+.+|.+.+..|+.|+..|+||||||+||||||+|++||||++ |....
T Consensus 360 --~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDm------------------P~d~d 419 (482)
T KOG0335|consen 360 --NGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDM------------------PADID 419 (482)
T ss_pred --CCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeec------------------Ccchh
Confidence 5899999999999999999999999999999999999999999999999999998 44558
Q ss_pred hHHHHhhhcCCCCCCCCceEEEEecCH
Q psy1907 223 SANQRAGVITGFNPLSDFRGCAHVLGE 249 (1320)
Q Consensus 223 s~~QR~GRAGR~g~g~~fg~~~~L~~~ 249 (1320)
+|+||+||+||.|.+ |.++.|++.
T Consensus 420 ~YvHRIGRTGR~Gn~---G~atsf~n~ 443 (482)
T KOG0335|consen 420 DYVHRIGRTGRVGNG---GRATSFFNE 443 (482)
T ss_pred hHHHhccccccCCCC---ceeEEEecc
Confidence 999999999999998 789988883
No 53
>KOG0326|consensus
Probab=99.90 E-value=1.1e-23 Score=229.78 Aligned_cols=216 Identities=15% Similarity=0.208 Sum_probs=176.2
Q ss_pred CHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH--HHH-HhhcCCCCEEEe
Q psy1907 2 TDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA--QKF-SEFFDDAPVFRI 77 (1320)
Q Consensus 2 T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~--~~f-~~~f~~~~vi~i 77 (1320)
||||+|+.+...-- |++..++|+|||| ..+..||.-.+-+.+.-++++.|++++|||.+. ..| .+|+.++-.+..
T Consensus 210 TPGRIlDL~~KgVa~ls~c~~lV~DEAD-KlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INL 288 (459)
T KOG0326|consen 210 TPGRILDLAKKGVADLSDCVILVMDEAD-KLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINL 288 (459)
T ss_pred CChhHHHHHhcccccchhceEEEechhh-hhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeeh
Confidence 89999999876654 9999999999995 788999988888888889999999999999954 334 456666555554
Q ss_pred CC--cccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCC
Q psy1907 78 PG--RRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSN 155 (1320)
Q Consensus 78 ~g--~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~ 155 (1320)
-. ....|..+|.-..+..++.- +.+++. ...-...+||||+...+|.+++.+.+. +++++-+|+.
T Consensus 289 M~eLtl~GvtQyYafV~e~qKvhC-LntLfs---kLqINQsIIFCNS~~rVELLAkKITel---------GyscyyiHak 355 (459)
T KOG0326|consen 289 MEELTLKGVTQYYAFVEERQKVHC-LNTLFS---KLQINQSIIFCNSTNRVELLAKKITEL---------GYSCYYIHAK 355 (459)
T ss_pred hhhhhhcchhhheeeechhhhhhh-HHHHHH---HhcccceEEEeccchHhHHHHHHHHhc---------cchhhHHHHH
Confidence 33 23457778877666655443 233322 112245899999999999999999874 8999999999
Q ss_pred CCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCC
Q psy1907 156 LPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFN 235 (1320)
Q Consensus 156 l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g 235 (1320)
|.|+.|.++|..|++|..+.+||||+.-|||||+.|.+|||++|++ +.++|.||+||+||.|
T Consensus 356 M~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk------------------~aEtYLHRIGRsGRFG 417 (459)
T KOG0326|consen 356 MAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPK------------------NAETYLHRIGRSGRFG 417 (459)
T ss_pred HHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCC------------------CHHHHHHHccCCccCC
Confidence 9999999999999999999999999999999999999999999954 4589999999999998
Q ss_pred CCCCceEEEEecCHHHH
Q psy1907 236 PLSDFRGCAHVLGEEVL 252 (1320)
Q Consensus 236 ~g~~fg~~~~L~~~~~~ 252 (1320)
.= |+++.|.+-++-
T Consensus 418 hl---GlAInLityedr 431 (459)
T KOG0326|consen 418 HL---GLAINLITYEDR 431 (459)
T ss_pred Cc---ceEEEEEehhhh
Confidence 74 699999985543
No 54
>PRK00254 ski2-like helicase; Provisional
Probab=99.89 E-value=1.2e-22 Score=260.67 Aligned_cols=234 Identities=13% Similarity=0.061 Sum_probs=158.9
Q ss_pred CCHHHHHHHHcCC-CCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCc-CHHHHHhhcCCCCEEEeC
Q psy1907 1 MTDGTLHREFLSE-PDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL-DAQKFSEFFDDAPVFRIP 78 (1320)
Q Consensus 1 ~T~G~LLr~l~~d-~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl-~~~~f~~~f~~~~vi~i~ 78 (1320)
+||+++...+... .+++++++||+||+|. ..+.+....+...+.+..++.|+|++|||+ |++.+++|++.. .+...
T Consensus 120 ~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~-l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~~~la~wl~~~-~~~~~ 197 (720)
T PRK00254 120 ATAEKFDSLLRHGSSWIKDVKLVVADEIHL-IGSYDRGATLEMILTHMLGRAQILGLSATVGNAEELAEWLNAE-LVVSD 197 (720)
T ss_pred EcHHHHHHHHhCCchhhhcCCEEEEcCcCc-cCCccchHHHHHHHHhcCcCCcEEEEEccCCCHHHHHHHhCCc-cccCC
Confidence 5999987766544 4589999999999994 222233333333344456678999999999 889999998643 33333
Q ss_pred CcccceeE--EE-----EcCCcc-chHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhc---------
Q psy1907 79 GRRFPVDI--YY-----TKAPEA-DYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLG--------- 141 (1320)
Q Consensus 79 g~~~pV~~--~y-----~~~~~~-~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~--------- 141 (1320)
.++.|... ++ ...... .+.......+..... ..+++|||++|+..++.++..|.+.+....
T Consensus 198 ~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~ 275 (720)
T PRK00254 198 WRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALK 275 (720)
T ss_pred CCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 44444321 11 111111 111222233333332 257899999999999998887765332110
Q ss_pred -------C--C------CCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCcccccc
Q psy1907 142 -------S--K------IKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFN 206 (1320)
Q Consensus 142 -------~--~------~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd 206 (1320)
. . .-...|..+||+|++++|..+++.|++|.++|||||+++++|+|+|++++||... ..|+
T Consensus 276 ~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~----~~~~ 351 (720)
T PRK00254 276 ELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDT----KRYS 351 (720)
T ss_pred HHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCc----eEcC
Confidence 0 0 0123589999999999999999999999999999999999999999999999543 2343
Q ss_pred CCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCH
Q psy1907 207 SRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGE 249 (1320)
Q Consensus 207 ~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~ 249 (1320)
.. ...+.+..+|.||+|||||.|-+ ..|.|+.+.+.
T Consensus 352 -~~-----~~~~~~~~~~~Qm~GRAGR~~~d-~~G~~ii~~~~ 387 (720)
T PRK00254 352 -NF-----GWEDIPVLEIQQMMGRAGRPKYD-EVGEAIIVATT 387 (720)
T ss_pred -CC-----CceeCCHHHHHHhhhccCCCCcC-CCceEEEEecC
Confidence 11 23466788999999999998744 23678887764
No 55
>KOG0348|consensus
Probab=99.88 E-value=1.1e-22 Score=234.44 Aligned_cols=245 Identities=17% Similarity=0.199 Sum_probs=179.1
Q ss_pred CHHHHHHHHcCCCC--CCCccEEEEeCCCccCcCcchHHHHHHHHhh-------------cCCCCcEEEEecCcC--HHH
Q psy1907 2 TDGTLHREFLSEPD--LASYSVMIIDEAHERTLHTDILFGLVKDIVR-------------FRSDLKLLISSATLD--AQK 64 (1320)
Q Consensus 2 T~G~LLr~l~~d~~--Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~-------------~r~~~qlIl~SATl~--~~~ 64 (1320)
|||||++++.+... ++++.+||+||| +|.++++|-..+-.++.. +++.+|-+|+|||+. +..
T Consensus 269 TPGRLvDHLknT~~i~~s~LRwlVlDEa-DrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~r 347 (708)
T KOG0348|consen 269 TPGRLVDHLKNTKSIKFSRLRWLVLDEA-DRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNR 347 (708)
T ss_pred CchHHHHHHhccchheeeeeeEEEecch-hHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHH
Confidence 99999999998665 899999999999 588998886655444332 122478899999993 455
Q ss_pred HHhhcC-CCCEEEe------------------CC---c-------ccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCC
Q psy1907 65 FSEFFD-DAPVFRI------------------PG---R-------RFPVDIYYTKAPEADYIDACVVSILQIHATQPLGD 115 (1320)
Q Consensus 65 f~~~f~-~~~vi~i------------------~g---~-------~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~ 115 (1320)
+++.-- ++..|.. +| . +-.....|+..|..-.+-++..++.+....++..+
T Consensus 348 La~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk 427 (708)
T KOG0348|consen 348 LADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQK 427 (708)
T ss_pred HhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhce
Confidence 665332 2222221 01 0 00123457777777777777888888888877778
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHHh-h--------cCC----CCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCccc
Q psy1907 116 ILVFLTGQEEIETCNEILQDRVRR-L--------GSK----IKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIA 182 (1320)
Q Consensus 116 iLVFl~t~~eie~l~~~L~~~~~~-l--------~~~----~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIA 182 (1320)
.+||+++++.||.-+.++.+.+.. + .++ ..+..++-|||+|.|++|..+|+.|....+-|++|||||
T Consensus 428 ~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVA 507 (708)
T KOG0348|consen 428 MIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVA 507 (708)
T ss_pred eEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhh
Confidence 999999999999999988765422 0 001 124578999999999999999999999999999999999
Q ss_pred ccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCC-CCCceEEEEecCHHHHhhcccccCC
Q psy1907 183 ETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNP-LSDFRGCAHVLGEEVLRGCAHVLGE 261 (1320)
Q Consensus 183 e~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~-g~~fg~~~~L~~~~~~~~l~~~~~p 261 (1320)
+||||+|+|++||.|+. |.|.++|+||+||+.|.|. |. .+.|.+-++.+|.....-..+
T Consensus 508 aRGLDlP~V~~vVQYd~------------------P~s~adylHRvGRTARaG~kG~--alLfL~P~Eaey~~~l~~~~~ 567 (708)
T KOG0348|consen 508 ARGLDLPHVGLVVQYDP------------------PFSTADYLHRVGRTARAGEKGE--ALLFLLPSEAEYVNYLKKHHI 567 (708)
T ss_pred hccCCCCCcCeEEEeCC------------------CCCHHHHHHHhhhhhhccCCCc--eEEEecccHHHHHHHHHhhcc
Confidence 99999999999998765 7889999999999999876 32 144445556677655433333
Q ss_pred ccccCC
Q psy1907 262 EVLRPE 267 (1320)
Q Consensus 262 ei~~~~ 267 (1320)
.+...+
T Consensus 568 ~l~q~~ 573 (708)
T KOG0348|consen 568 MLLQFD 573 (708)
T ss_pred hhhccc
Confidence 333333
No 56
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.88 E-value=3.8e-23 Score=204.95 Aligned_cols=101 Identities=45% Similarity=0.794 Sum_probs=83.2
Q ss_pred HHHHHHHHHhccccccC-----------C--cchHHHHHHHHhhhhhhceeecCCCCceeeecCcEEEEcCCCccccCCC
Q psy1907 1192 EQLIGLVQRVEMELVSN-----------P--TETVNIRKAITAGYFYHIAKLSKSGSYKTAKHNQTVMIHPNSSLFEELP 1258 (1320)
Q Consensus 1192 ~QL~~il~~~~l~~~s~-----------~--~~~~~irkal~sG~f~n~A~~~~~~~Y~t~~~~~~v~ihPsS~l~~~~p 1258 (1320)
+||.++|+++|+...+. . .+...||+|||+|||+|+|++++++.|+|+.++..|+|||+|+|++.+|
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~~~~p 80 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLFKKPP 80 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTTTTT-
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCCCCCEEEecCCCEEEEecCcccccccc
Confidence 69999999999965543 1 4557899999999999999999999999998889999999999999999
Q ss_pred CeEEEEEEEeecccchhhhcccchhhHHHhcCCc
Q psy1907 1259 RWVLYHELVFTTKEFMRQVTEIESKWLLEVAPHY 1292 (1320)
Q Consensus 1259 ~wvvy~elv~Tsk~y~r~vt~I~p~Wl~e~ap~~ 1292 (1320)
+||||+|++.|+|.|||+||.|+|+||.++||||
T Consensus 81 ~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~~~~ 114 (114)
T PF07717_consen 81 KWVVYHELVRTSKPYMRDVTAISPEWLLLFAPHY 114 (114)
T ss_dssp SEEEEEEEEESSSEEEEEEEE--HHHHHHH-TTT
T ss_pred ccchhhhheecCCcEEEECcCCCHHHHHHHcccC
Confidence 9999999999999999999999999999999997
No 57
>KOG0332|consensus
Probab=99.88 E-value=1.5e-22 Score=225.51 Aligned_cols=220 Identities=16% Similarity=0.207 Sum_probs=171.3
Q ss_pred CHHHHHHHHcC-CC-CCCCccEEEEeCCCccCcCcchHHH-HHHHHhhcCCCCcEEEEecCcCH--HHHHh-hcCCCCEE
Q psy1907 2 TDGTLHREFLS-EP-DLASYSVMIIDEAHERTLHTDILFG-LVKDIVRFRSDLKLLISSATLDA--QKFSE-FFDDAPVF 75 (1320)
Q Consensus 2 T~G~LLr~l~~-d~-~Ls~~s~iVLDEaHeR~l~td~ll~-llk~l~~~r~~~qlIl~SATl~~--~~f~~-~f~~~~vi 75 (1320)
|||.+++.+.. .- .+..+.++|+|||+ -++++.-+.+ -.++....+++.|+++||||.+. ..|+. ...++.++
T Consensus 214 TPGtv~Dlm~klk~id~~kikvfVlDEAD-~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i 292 (477)
T KOG0332|consen 214 TPGTVLDLMLKLKCIDLEKIKVFVLDEAD-VMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVI 292 (477)
T ss_pred CCccHHHHHHHHHhhChhhceEEEecchh-hhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCcee
Confidence 89999999876 33 38999999999995 5666653322 23333335679999999999943 44443 55677766
Q ss_pred EeCC---cccceeEEEEcCCcc-chHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy1907 76 RIPG---RRFPVDIYYTKAPEA-DYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILP 151 (1320)
Q Consensus 76 ~i~g---~~~pV~~~y~~~~~~-~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~ 151 (1320)
.+.. ..++|..+|...+.. ++.++++ .++....-|+.+|||.|+..+..++..|.+ .+..|..
T Consensus 293 ~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~----~lyg~~tigqsiIFc~tk~ta~~l~~~m~~---------~Gh~V~~ 359 (477)
T KOG0332|consen 293 ILKREELALDNIKQLYVLCACRDDKYQALV----NLYGLLTIGQSIIFCHTKATAMWLYEEMRA---------EGHQVSL 359 (477)
T ss_pred eeehhhccccchhhheeeccchhhHHHHHH----HHHhhhhhhheEEEEeehhhHHHHHHHHHh---------cCceeEE
Confidence 6653 457899999887654 3444433 333333458899999999999999999887 3788999
Q ss_pred ecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhc
Q psy1907 152 VYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVI 231 (1320)
Q Consensus 152 LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRA 231 (1320)
|||+|..++|.+++..|+.|+.||+|+||+.+||||++.|..||||+++-. |+. -...+.|.||+||+
T Consensus 360 l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~--~~~----------~pD~etYlHRiGRt 427 (477)
T KOG0332|consen 360 LHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVK--YTG----------EPDYETYLHRIGRT 427 (477)
T ss_pred eeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccc--cCC----------CCCHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999543 211 24678999999999
Q ss_pred CCCCCCCCceEEEEecCHH
Q psy1907 232 TGFNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 232 GR~g~g~~fg~~~~L~~~~ 250 (1320)
||.|.. |.+|.+...+
T Consensus 428 GRFGkk---G~a~n~v~~~ 443 (477)
T KOG0332|consen 428 GRFGKK---GLAINLVDDK 443 (477)
T ss_pred cccccc---ceEEEeeccc
Confidence 999986 6899987754
No 58
>KOG0341|consensus
Probab=99.87 E-value=7.6e-23 Score=227.39 Aligned_cols=215 Identities=18% Similarity=0.225 Sum_probs=163.9
Q ss_pred CHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhcCC---CCEEEe
Q psy1907 2 TDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFFDD---APVFRI 77 (1320)
Q Consensus 2 T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~~---~~vi~i 77 (1320)
|||||.+.+...-. |.-..+++|||| +|+++++|--++-.+.......+|++|||||++.. ++.|-.. -|+..-
T Consensus 309 TPGRL~DmL~KK~~sLd~CRyL~lDEA-DRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~K-IQ~FAkSALVKPvtvN 386 (610)
T KOG0341|consen 309 TPGRLMDMLAKKIMSLDACRYLTLDEA-DRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKK-IQNFAKSALVKPVTVN 386 (610)
T ss_pred CcchHHHHHHHhhccHHHHHHhhhhhH-HHHhhccchhhHHHHHHHHhhhhheeeeeccccHH-HHHHHHhhcccceEEe
Confidence 99999999877665 888999999999 69999999877766666667789999999999643 3333322 222222
Q ss_pred CCcccceeEEEEcCCccchHH--HHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCC
Q psy1907 78 PGRRFPVDIYYTKAPEADYID--ACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSN 155 (1320)
Q Consensus 78 ~g~~~pV~~~y~~~~~~~~l~--~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~ 155 (1320)
.||.-.-....+ .+.+|+. +.+..++.... ..+..+|||+-.+.+++.+.++|.- .++.++.+|||
T Consensus 387 VGRAGAAsldVi--QevEyVkqEaKiVylLeCLQ-KT~PpVLIFaEkK~DVD~IhEYLLl---------KGVEavaIHGG 454 (610)
T KOG0341|consen 387 VGRAGAASLDVI--QEVEYVKQEAKIVYLLECLQ-KTSPPVLIFAEKKADVDDIHEYLLL---------KGVEAVAIHGG 454 (610)
T ss_pred cccccccchhHH--HHHHHHHhhhhhhhHHHHhc-cCCCceEEEeccccChHHHHHHHHH---------ccceeEEeecC
Confidence 343221111111 1223443 22333333222 2245699999999999999998863 58999999999
Q ss_pred CCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCC
Q psy1907 156 LPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFN 235 (1320)
Q Consensus 156 l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g 235 (1320)
-.|++|...++.|+.|+-.|+||||+|+.|+|+|+|.+||||++ |-..++|+||+||+||.|
T Consensus 455 KDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDM------------------P~eIENYVHRIGRTGRsg 516 (610)
T KOG0341|consen 455 KDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDM------------------PEEIENYVHRIGRTGRSG 516 (610)
T ss_pred cchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCC------------------hHHHHHHHHHhcccCCCC
Confidence 99999999999999999999999999999999999999999998 566789999999999999
Q ss_pred CCCCceEEEEecCHHH
Q psy1907 236 PLSDFRGCAHVLGEEV 251 (1320)
Q Consensus 236 ~g~~fg~~~~L~~~~~ 251 (1320)
.. |++..++++..
T Consensus 517 ~~---GiATTfINK~~ 529 (610)
T KOG0341|consen 517 KT---GIATTFINKNQ 529 (610)
T ss_pred Cc---ceeeeeecccc
Confidence 86 68888887653
No 59
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.87 E-value=2.4e-21 Score=243.60 Aligned_cols=220 Identities=15% Similarity=0.168 Sum_probs=157.6
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCc-chH--HHHHHHHhhcCCCCcEEEEecCcCHHH---HHhhcC-CC
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHT-DIL--FGLVKDIVRFRSDLKLLISSATLDAQK---FSEFFD-DA 72 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~t-d~l--l~llk~l~~~r~~~qlIl~SATl~~~~---f~~~f~-~~ 72 (1320)
+||++|+.....+.+ ..++++|||||||..+-.. ||- ...+..+....++.+++++|||.+... +...++ ..
T Consensus 121 ~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~ 200 (607)
T PRK11057 121 IAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLND 200 (607)
T ss_pred EChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCC
Confidence 478887743222222 4589999999999643211 222 122333444557889999999996543 333332 34
Q ss_pred CEEEeCCcccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEe
Q psy1907 73 PVFRIPGRRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPV 152 (1320)
Q Consensus 73 ~vi~i~g~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~L 152 (1320)
|.+.+.+...| .+.|........+.. +........++.+|||++|+++++.++..|.+ .++.+.++
T Consensus 201 ~~~~~~~~~r~-nl~~~v~~~~~~~~~----l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~---------~g~~v~~~ 266 (607)
T PRK11057 201 PLIQISSFDRP-NIRYTLVEKFKPLDQ----LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQS---------RGISAAAY 266 (607)
T ss_pred eEEEECCCCCC-cceeeeeeccchHHH----HHHHHHhcCCCCEEEEECcHHHHHHHHHHHHh---------CCCCEEEe
Confidence 44444432222 123322222222222 22333334467899999999999999999986 37889999
Q ss_pred cCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcC
Q psy1907 153 YSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVIT 232 (1320)
Q Consensus 153 H~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAG 232 (1320)
||+|++++|.++++.|..|..+|||||+++++|||+|+|++||++++ |-|.++|.||+||||
T Consensus 267 Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~------------------P~s~~~y~Qr~GRaG 328 (607)
T PRK11057 267 HAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI------------------PRNIESYYQETGRAG 328 (607)
T ss_pred cCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCC------------------CCCHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999887 567899999999999
Q ss_pred CCCCCCCceEEEEecCHHHHhhc
Q psy1907 233 GFNPLSDFRGCAHVLGEEVLRGC 255 (1320)
Q Consensus 233 R~g~g~~fg~~~~L~~~~~~~~l 255 (1320)
|.|.. |.|+.+|+.+++..+
T Consensus 329 R~G~~---~~~ill~~~~d~~~~ 348 (607)
T PRK11057 329 RDGLP---AEAMLFYDPADMAWL 348 (607)
T ss_pred CCCCC---ceEEEEeCHHHHHHH
Confidence 99876 589999998876544
No 60
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.86 E-value=5.8e-21 Score=233.88 Aligned_cols=221 Identities=14% Similarity=0.132 Sum_probs=153.3
Q ss_pred CCHHHHHHHH--cCCC-CCCCccEEEEeCCCccCcC-cchHHHH--HHHHhhcCCCCcEEEEecCcCHH---HHHhhcC-
Q psy1907 1 MTDGTLHREF--LSEP-DLASYSVMIIDEAHERTLH-TDILFGL--VKDIVRFRSDLKLLISSATLDAQ---KFSEFFD- 70 (1320)
Q Consensus 1 ~T~G~LLr~l--~~d~-~Ls~~s~iVLDEaHeR~l~-td~ll~l--lk~l~~~r~~~qlIl~SATl~~~---~f~~~f~- 70 (1320)
+||+++.... ...- .+.++++|||||||..+-. .||-..+ +..+....++.+++++|||++.. .+.+.++
T Consensus 107 ~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l 186 (470)
T TIGR00614 107 VTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNL 186 (470)
T ss_pred ECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCC
Confidence 4788764321 1100 3678999999999953211 1232222 22334445788999999999764 3444443
Q ss_pred CCCEEEeCCcccceeEEEEcCCcc-chHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEE
Q psy1907 71 DAPVFRIPGRRFPVDIYYTKAPEA-DYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELII 149 (1320)
Q Consensus 71 ~~~vi~i~g~~~pV~~~y~~~~~~-~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v 149 (1320)
..+.+...+...|. +.|...+.. +.++.....+. ...+....|||++|+++++.++..|.+ .++.+
T Consensus 187 ~~~~~~~~s~~r~n-l~~~v~~~~~~~~~~l~~~l~---~~~~~~~~IIF~~s~~~~e~la~~L~~---------~g~~~ 253 (470)
T TIGR00614 187 KNPQIFCTSFDRPN-LYYEVRRKTPKILEDLLRFIR---KEFKGKSGIIYCPSRKKSEQVTASLQN---------LGIAA 253 (470)
T ss_pred CCCcEEeCCCCCCC-cEEEEEeCCccHHHHHHHHHH---HhcCCCceEEEECcHHHHHHHHHHHHh---------cCCCe
Confidence 22333222222221 222222221 33333222222 123334569999999999999999986 37889
Q ss_pred EEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhh
Q psy1907 150 LPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAG 229 (1320)
Q Consensus 150 ~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~G 229 (1320)
..+||+|++++|..+++.|..|..+|||||+++++|||+|+|++||++++ |-|.++|.||+|
T Consensus 254 ~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~------------------P~s~~~y~Qr~G 315 (470)
T TIGR00614 254 GAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSL------------------PKSMESYYQESG 315 (470)
T ss_pred eEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCC------------------CCCHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999987 557799999999
Q ss_pred hcCCCCCCCCceEEEEecCHHHHhhc
Q psy1907 230 VITGFNPLSDFRGCAHVLGEEVLRGC 255 (1320)
Q Consensus 230 RAGR~g~g~~fg~~~~L~~~~~~~~l 255 (1320)
||||.|.. |.|+.+|+..+...+
T Consensus 316 RaGR~G~~---~~~~~~~~~~d~~~~ 338 (470)
T TIGR00614 316 RAGRDGLP---SECHLFYAPADINRL 338 (470)
T ss_pred CcCCCCCC---ceEEEEechhHHHHH
Confidence 99999876 689999998877544
No 61
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.86 E-value=3.7e-21 Score=244.26 Aligned_cols=220 Identities=13% Similarity=0.069 Sum_probs=155.8
Q ss_pred CCHHHHHH------HHcCCCCCCCccEEEEeCCCccCcCc--chHHHH--HHHHhhcCCCCcEEEEecCcCHH---HHHh
Q psy1907 1 MTDGTLHR------EFLSEPDLASYSVMIIDEAHERTLHT--DILFGL--VKDIVRFRSDLKLLISSATLDAQ---KFSE 67 (1320)
Q Consensus 1 ~T~G~LLr------~l~~d~~Ls~~s~iVLDEaHeR~l~t--d~ll~l--lk~l~~~r~~~qlIl~SATl~~~---~f~~ 67 (1320)
+|||+|.. .+..-.....++.|||||||.- .+. ||-... +..+....++.+++++|||++.. .+.+
T Consensus 558 vTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcV-SqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~ 636 (1195)
T PLN03137 558 VTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCV-SQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQ 636 (1195)
T ss_pred EChHHhhcchHHHHHHHhhhhccccceeccCcchhh-hhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHH
Confidence 48998752 2211112356899999999953 222 333222 22333455678899999999653 3555
Q ss_pred hcCCC-CEEEeCCcccceeEEEEcCCccchHHHHHHHHHHHH-hhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy1907 68 FFDDA-PVFRIPGRRFPVDIYYTKAPEADYIDACVVSILQIH-ATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIK 145 (1320)
Q Consensus 68 ~f~~~-~vi~i~g~~~pV~~~y~~~~~~~~l~~~i~~v~~i~-~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~ 145 (1320)
.++-. +++...+. ....++|...+..... ...+..+. .....+..||||+++.+++.++..|.. .
T Consensus 637 ~L~l~~~~vfr~Sf-~RpNL~y~Vv~k~kk~---le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~---------~ 703 (1195)
T PLN03137 637 ALGLVNCVVFRQSF-NRPNLWYSVVPKTKKC---LEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQE---------F 703 (1195)
T ss_pred HcCCCCcEEeeccc-CccceEEEEeccchhH---HHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHH---------C
Confidence 55432 22222222 2223455444433221 11222222 222345689999999999999999986 3
Q ss_pred CeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHH
Q psy1907 146 ELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASAN 225 (1320)
Q Consensus 146 ~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~ 225 (1320)
++.+.++||+|++++|..+++.|..|..+|||||+++++|||+|+|++||++++ |-|.++|.
T Consensus 704 Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydl------------------PkSiEsYy 765 (1195)
T PLN03137 704 GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL------------------PKSIEGYH 765 (1195)
T ss_pred CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCC------------------CCCHHHHH
Confidence 788999999999999999999999999999999999999999999999999998 56789999
Q ss_pred HHhhhcCCCCCCCCceEEEEecCHHHHhhc
Q psy1907 226 QRAGVITGFNPLSDFRGCAHVLGEEVLRGC 255 (1320)
Q Consensus 226 QR~GRAGR~g~g~~fg~~~~L~~~~~~~~l 255 (1320)
||+|||||.|.. |.|+.+|+..++..+
T Consensus 766 QriGRAGRDG~~---g~cILlys~~D~~~~ 792 (1195)
T PLN03137 766 QECGRAGRDGQR---SSCVLYYSYSDYIRV 792 (1195)
T ss_pred hhhcccCCCCCC---ceEEEEecHHHHHHH
Confidence 999999999875 589999998877654
No 62
>KOG0347|consensus
Probab=99.85 E-value=1.4e-22 Score=234.29 Aligned_cols=209 Identities=18% Similarity=0.215 Sum_probs=153.3
Q ss_pred CHHHHHHHHcCCCC----CCCccEEEEeCCCccCcCcchHH---HHHHHHhh--cCCCCcEEEEecCcCHHHHHh-----
Q psy1907 2 TDGTLHREFLSEPD----LASYSVMIIDEAHERTLHTDILF---GLVKDIVR--FRSDLKLLISSATLDAQKFSE----- 67 (1320)
Q Consensus 2 T~G~LLr~l~~d~~----Ls~~s~iVLDEaHeR~l~td~ll---~llk~l~~--~r~~~qlIl~SATl~~~~f~~----- 67 (1320)
|||||...+..+.. +++++++||||| +|++.-+.+. .+|+.+.. ....+|+++||||+....+..
T Consensus 320 TPGRlweli~e~n~~l~~~k~vkcLVlDEa-DRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~ 398 (731)
T KOG0347|consen 320 TPGRLWELIEEDNTHLGNFKKVKCLVLDEA-DRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSR 398 (731)
T ss_pred cchHHHHHHHhhhhhhhhhhhceEEEEccH-HHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhh
Confidence 99999998876654 789999999999 5888877654 34555442 345689999999995432211
Q ss_pred ---------------------hcCCCCEEEeCCcccceeEEEEcCCccchHHHHHHHHH-----------HHHhhCCCCC
Q psy1907 68 ---------------------FFDDAPVFRIPGRRFPVDIYYTKAPEADYIDACVVSIL-----------QIHATQPLGD 115 (1320)
Q Consensus 68 ---------------------~f~~~~vi~i~g~~~pV~~~y~~~~~~~~l~~~i~~v~-----------~i~~~~~~g~ 115 (1320)
|++.+.++.+.. ...-...+...++ +...+.-||.
T Consensus 399 k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~-------------q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGr 465 (731)
T KOG0347|consen 399 KKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTP-------------QSATASTLTESLIECPPLEKDLYLYYFLTRYPGR 465 (731)
T ss_pred hccchhhhhhHHHHHHHHHhCccCCCeeEecCc-------------chhHHHHHHHHhhcCCccccceeEEEEEeecCCc
Confidence 222222222211 1110011111100 1112334899
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEE
Q psy1907 116 ILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVI 195 (1320)
Q Consensus 116 iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VI 195 (1320)
.|||||+...|..++-.|.. .++..++||+.|.|.+|.+.++.|+...--||||||||+||||||+|.+||
T Consensus 466 TlVF~NsId~vKRLt~~L~~---------L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVI 536 (731)
T KOG0347|consen 466 TLVFCNSIDCVKRLTVLLNN---------LDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVI 536 (731)
T ss_pred eEEEechHHHHHHHHHHHhh---------cCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEE
Confidence 99999999999999999986 377889999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHHHhh
Q psy1907 196 DPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEVLRG 254 (1320)
Q Consensus 196 D~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~~~ 254 (1320)
+|-. |-+.+-|+||.||+.|++.. |+...+..+++...
T Consensus 537 HYqV------------------PrtseiYVHRSGRTARA~~~---Gvsvml~~P~e~~~ 574 (731)
T KOG0347|consen 537 HYQV------------------PRTSEIYVHRSGRTARANSE---GVSVMLCGPQEVGP 574 (731)
T ss_pred Eeec------------------CCccceeEecccccccccCC---CeEEEEeChHHhHH
Confidence 9866 44557788999999999886 68888888765433
No 63
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.85 E-value=2e-20 Score=246.86 Aligned_cols=220 Identities=19% Similarity=0.126 Sum_probs=151.9
Q ss_pred CCHHHHHHHHcCC--CCCCCccEEEEeCCCccCcCcc--h-HHHHHHHHhh-cCCCCcEEEEecCc-CHHHHHhhcCCC-
Q psy1907 1 MTDGTLHREFLSE--PDLASYSVMIIDEAHERTLHTD--I-LFGLVKDIVR-FRSDLKLLISSATL-DAQKFSEFFDDA- 72 (1320)
Q Consensus 1 ~T~G~LLr~l~~d--~~Ls~~s~iVLDEaHeR~l~td--~-ll~llk~l~~-~r~~~qlIl~SATl-~~~~f~~~f~~~- 72 (1320)
.||++|...+.+. ..|+++++|||||+|.- ..+. . +...+..+.. ...+.|+|++|||+ |++.+++|+++.
T Consensus 105 TTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L-~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI~n~eevA~~L~g~~ 183 (1490)
T PRK09751 105 TTPESLYLMLTSRARETLRGVETVIIDEVHAV-AGSKRGAHLALSLERLDALLHTSAQRIGLSATVRSASDVAAFLGGDR 183 (1490)
T ss_pred ecHHHHHHHHhhhhhhhhccCCEEEEecHHHh-cccccccHHHHHHHHHHHhCCCCCeEEEEEeeCCCHHHHHHHhcCCC
Confidence 3999998776543 24999999999999953 2332 1 2223333433 34578999999999 788899999753
Q ss_pred CEEEe-CC--cccceeEEEEcCCccch----------------H----HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHH
Q psy1907 73 PVFRI-PG--RRFPVDIYYTKAPEADY----------------I----DACVVSILQIHATQPLGDILVFLTGQEEIETC 129 (1320)
Q Consensus 73 ~vi~i-~g--~~~pV~~~y~~~~~~~~----------------l----~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l 129 (1320)
++..+ +. +..++++.. +...... . ......++.... ..+++|||+||+..+|.+
T Consensus 184 pv~Iv~~~~~r~~~l~v~v-p~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~--~~~stLVFvNSR~~AE~L 260 (1490)
T PRK09751 184 PVTVVNPPAMRHPQIRIVV-PVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVL--RHRSTIVFTNSRGLAEKL 260 (1490)
T ss_pred CEEEECCCCCcccceEEEE-ecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHh--cCCCEEEECCCHHHHHHH
Confidence 43222 22 223333322 1111000 0 011111222212 246899999999999999
Q ss_pred HHHHHHHHHhhc------------------------CCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccC
Q psy1907 130 NEILQDRVRRLG------------------------SKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETS 185 (1320)
Q Consensus 130 ~~~L~~~~~~l~------------------------~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~g 185 (1320)
+..|++...... .+...+.+..+||+|++++|..+++.|++|..+|||||+.+|+|
T Consensus 261 a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELG 340 (1490)
T PRK09751 261 TARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELG 340 (1490)
T ss_pred HHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHcc
Confidence 999987532100 00112447789999999999999999999999999999999999
Q ss_pred CCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceE
Q psy1907 186 LTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRG 242 (1320)
Q Consensus 186 ldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~ 242 (1320)
|||++|++||++|. |.|.++|.||+|||||...|.+.|.
T Consensus 341 IDIg~VDlVIq~gs------------------P~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 341 IDMGAVDLVIQVAT------------------PLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred CCcccCCEEEEeCC------------------CCCHHHHHHHhCCCCCCCCCccEEE
Confidence 99999999999876 7789999999999999855544444
No 64
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.84 E-value=2.9e-20 Score=241.71 Aligned_cols=224 Identities=18% Similarity=0.122 Sum_probs=152.8
Q ss_pred CCHHHHHHHHcCCC---CCCCccEEEEeCCCccCcCcc---hHHHHHHHHhhc-CCCCcEEEEecCc-CHHHHHhhcCCC
Q psy1907 1 MTDGTLHREFLSEP---DLASYSVMIIDEAHERTLHTD---ILFGLVKDIVRF-RSDLKLLISSATL-DAQKFSEFFDDA 72 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~---~Ls~~s~iVLDEaHeR~l~td---~ll~llk~l~~~-r~~~qlIl~SATl-~~~~f~~~f~~~ 72 (1320)
.||++|...+.+.. .|+++++|||||||.- .+.. .+...+..+... .++.|+|++|||+ +.+.+++|+.+.
T Consensus 152 tTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l-~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~ 230 (876)
T PRK13767 152 TTPESLAILLNSPKFREKLRTVKWVIVDEIHSL-AENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGY 230 (876)
T ss_pred ecHHHHHHHhcChhHHHHHhcCCEEEEechhhh-ccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCc
Confidence 49999876554332 3799999999999952 2221 122233333332 3678999999999 667888888542
Q ss_pred -------CEEEeCCc---ccceeEEEEc-----CCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHH
Q psy1907 73 -------PVFRIPGR---RFPVDIYYTK-----APEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRV 137 (1320)
Q Consensus 73 -------~vi~i~g~---~~pV~~~y~~-----~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~ 137 (1320)
++..+.+. .+++.+.... .+...........+..+.. ..+++|||+||+..++.++..|.+.+
T Consensus 231 ~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~ 308 (876)
T PRK13767 231 EDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRF 308 (876)
T ss_pred cccCCCCceEEEccCCCccceEEEeccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhc
Confidence 22222221 1222221110 0111112223333333332 24689999999999999999998753
Q ss_pred HhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCcccccee
Q psy1907 138 RRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVV 217 (1320)
Q Consensus 138 ~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~ 217 (1320)
.. ...+..+..+||+|++++|..+++.|++|..+|||||+++|+|||||+|++||++|.
T Consensus 309 ~~---~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~------------------ 367 (876)
T PRK13767 309 PE---EYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGS------------------ 367 (876)
T ss_pred hh---hccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCC------------------
Confidence 21 123467899999999999999999999999999999999999999999999999876
Q ss_pred ccCHhhHHHHhhhcCCCCCCCCceEEEEecC
Q psy1907 218 PISKASANQRAGVITGFNPLSDFRGCAHVLG 248 (1320)
Q Consensus 218 piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~ 248 (1320)
|.|.++|.||+|||||.+.+..-|.++....
T Consensus 368 P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 368 PKSVSRLLQRIGRAGHRLGEVSKGRIIVVDR 398 (876)
T ss_pred CCCHHHHHHhcccCCCCCCCCCcEEEEEcCc
Confidence 5678999999999999743223356766433
No 65
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.83 E-value=4.1e-20 Score=232.68 Aligned_cols=220 Identities=14% Similarity=0.117 Sum_probs=153.2
Q ss_pred CCHHHHHHHHcCCC-CCCCccEEEEeCCCccCcC-cchHHH--HHHHHhhcCCCCcEEEEecCcCHHH---HHhhcC-CC
Q psy1907 1 MTDGTLHREFLSEP-DLASYSVMIIDEAHERTLH-TDILFG--LVKDIVRFRSDLKLLISSATLDAQK---FSEFFD-DA 72 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~-~Ls~~s~iVLDEaHeR~l~-td~ll~--llk~l~~~r~~~qlIl~SATl~~~~---f~~~f~-~~ 72 (1320)
+||++|......+. ...++++|||||||.-+-. .||-.. -+..+....++..+|++|||.+... +..+++ ..
T Consensus 109 ~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~ 188 (591)
T TIGR01389 109 VAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLAD 188 (591)
T ss_pred EChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCC
Confidence 47777754332222 2578999999999964321 233222 2223333344556999999996643 445554 22
Q ss_pred CEEEeCCcccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEe
Q psy1907 73 PVFRIPGRRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPV 152 (1320)
Q Consensus 73 ~vi~i~g~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~L 152 (1320)
+.+.+.+.. ...+.|...+..+..+.+ .........+..|||++|+.+++.+++.|.. .++.+.++
T Consensus 189 ~~~~~~~~~-r~nl~~~v~~~~~~~~~l----~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~---------~g~~~~~~ 254 (591)
T TIGR01389 189 ANEFITSFD-RPNLRFSVVKKNNKQKFL----LDYLKKHRGQSGIIYASSRKKVEELAERLES---------QGISALAY 254 (591)
T ss_pred CCeEecCCC-CCCcEEEEEeCCCHHHHH----HHHHHhcCCCCEEEEECcHHHHHHHHHHHHh---------CCCCEEEE
Confidence 222222221 122334332222332222 2222233356799999999999999999976 36789999
Q ss_pred cCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcC
Q psy1907 153 YSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVIT 232 (1320)
Q Consensus 153 H~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAG 232 (1320)
||+|++++|..+++.|..|..+|||||+++++|||+|+|++||++++ |-|.++|.||+||||
T Consensus 255 H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~------------------p~s~~~y~Q~~GRaG 316 (591)
T TIGR01389 255 HAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDM------------------PGNLESYYQEAGRAG 316 (591)
T ss_pred ECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCC------------------CCCHHHHhhhhcccc
Confidence 99999999999999999999999999999999999999999999887 567889999999999
Q ss_pred CCCCCCCceEEEEecCHHHHhhc
Q psy1907 233 GFNPLSDFRGCAHVLGEEVLRGC 255 (1320)
Q Consensus 233 R~g~g~~fg~~~~L~~~~~~~~l 255 (1320)
|.|.. |.|+.+|+.++...+
T Consensus 317 R~G~~---~~~il~~~~~d~~~~ 336 (591)
T TIGR01389 317 RDGLP---AEAILLYSPADIALL 336 (591)
T ss_pred CCCCC---ceEEEecCHHHHHHH
Confidence 99865 489999998876543
No 66
>KOG0334|consensus
Probab=99.81 E-value=6.4e-20 Score=227.84 Aligned_cols=218 Identities=15% Similarity=0.172 Sum_probs=171.3
Q ss_pred CCHHHHHHHHcCCCC----CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH--HHHHhhcCCCCE
Q psy1907 1 MTDGTLHREFLSEPD----LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA--QKFSEFFDDAPV 74 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~----Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~--~~f~~~f~~~~v 74 (1320)
||||+.++.+..+.. |.++.++|+||| +|+.+++|.....+++.+.++++|+++||||++. +.++.=.-..|+
T Consensus 494 ~tpGRmiD~l~~n~grvtnlrR~t~lv~dea-DrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pv 572 (997)
T KOG0334|consen 494 CTPGRMIDILCANSGRVTNLRRVTYLVLDEA-DRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPV 572 (997)
T ss_pred eccchhhhhHhhcCCccccccccceeeechh-hhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCe
Confidence 799999999865443 677779999999 5999999988777788889999999999999965 444442223555
Q ss_pred EE-eCCcc---cceeEEEEcCC-ccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEE
Q psy1907 75 FR-IPGRR---FPVDIYYTKAP-EADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELII 149 (1320)
Q Consensus 75 i~-i~g~~---~pV~~~y~~~~-~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v 149 (1320)
-. +.|+. ..|...+...+ ...++..+..+|- .....+++|||+..++.++.|.+.|.+ .++.+
T Consensus 573 eiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~---e~~e~~~tiiFv~~qe~~d~l~~~L~~---------ag~~~ 640 (997)
T KOG0334|consen 573 EIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLG---ERYEDGKTIIFVDKQEKADALLRDLQK---------AGYNC 640 (997)
T ss_pred eEEEccceeEeccceEEEEEecCchHHHHHHHHHHH---HHhhcCCEEEEEcCchHHHHHHHHHHh---------cCcch
Confidence 33 33332 23444444444 4455554444332 223368999999999999999999986 47888
Q ss_pred EEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhh
Q psy1907 150 LPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAG 229 (1320)
Q Consensus 150 ~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~G 229 (1320)
..|||+.++.+|..+++.|++|..+++|||++++||||+..+..||||+++. ..+.|.||.|
T Consensus 641 ~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pn------------------h~edyvhR~g 702 (997)
T KOG0334|consen 641 DSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPN------------------HYEDYVHRVG 702 (997)
T ss_pred hhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccch------------------hHHHHHHHhc
Confidence 8899999999999999999999999999999999999999999999999833 3466999999
Q ss_pred hcCCCCCCCCceEEEEecCHHHH
Q psy1907 230 VITGFNPLSDFRGCAHVLGEEVL 252 (1320)
Q Consensus 230 RAGR~g~g~~fg~~~~L~~~~~~ 252 (1320)
||||+|+. |.||.+.++++.
T Consensus 703 RTgragrk---g~AvtFi~p~q~ 722 (997)
T KOG0334|consen 703 RTGRAGRK---GAAVTFITPDQL 722 (997)
T ss_pred ccccCCcc---ceeEEEeChHHh
Confidence 99999997 689999998543
No 67
>KOG0327|consensus
Probab=99.81 E-value=2.1e-19 Score=202.81 Aligned_cols=218 Identities=13% Similarity=0.249 Sum_probs=173.3
Q ss_pred CHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH--HHHHhhcCCCCE-EEe
Q psy1907 2 TDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA--QKFSEFFDDAPV-FRI 77 (1320)
Q Consensus 2 T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~--~~f~~~f~~~~v-i~i 77 (1320)
|||++++.+....+ ...++.+|+|||+| ++.-+|.-.+-......+++.|++++|||++. ....+-|...|+ +.+
T Consensus 152 TpgrV~dml~~~~l~~~~iKmfvlDEaDE-mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~v 230 (397)
T KOG0327|consen 152 TPGRVFDMLNRGSLSTDGIKMFVLDEADE-MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILV 230 (397)
T ss_pred CchhHHHhhccccccccceeEEeecchHh-hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEe
Confidence 89999999987766 66799999999976 56667776666666678999999999999955 445665554444 333
Q ss_pred CC--cc-cceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecC
Q psy1907 78 PG--RR-FPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYS 154 (1320)
Q Consensus 78 ~g--~~-~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~ 154 (1320)
.. .+ --++.+|...-...+ +.++..++. .-...+||+||++.+..+...|.. .++.+..+||
T Consensus 231 kk~~ltl~gikq~~i~v~k~~k----~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~---------~~~~~s~~~~ 295 (397)
T KOG0327|consen 231 KKDELTLEGIKQFYINVEKEEK----LDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRA---------HGFTVSAIHG 295 (397)
T ss_pred cchhhhhhheeeeeeecccccc----ccHHHHHHH--hhhcceEEecchhhHHHHHHHHhh---------CCceEEEeec
Confidence 21 11 234555655444443 444455555 246789999999999999999965 3789999999
Q ss_pred CCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCC
Q psy1907 155 NLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGF 234 (1320)
Q Consensus 155 ~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~ 234 (1320)
.|.+.+|..++..|+.|..+|||+|++++||+||-.+..|||+++ |..+++|.||+||+||.
T Consensus 296 d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydl------------------P~~~~~yihR~gr~gr~ 357 (397)
T KOG0327|consen 296 DMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDL------------------PARKENYIHRIGRAGRF 357 (397)
T ss_pred ccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeecc------------------ccchhhhhhhccccccc
Confidence 999999999999999999999999999999999999999999988 55678999999999999
Q ss_pred CCCCCceEEEEecCHHHHhhcc
Q psy1907 235 NPLSDFRGCAHVLGEEVLRGCA 256 (1320)
Q Consensus 235 g~g~~fg~~~~L~~~~~~~~l~ 256 (1320)
|.. |..+.+.++++...+.
T Consensus 358 grk---g~~in~v~~~d~~~lk 376 (397)
T KOG0327|consen 358 GRK---GVAINFVTEEDVRDLK 376 (397)
T ss_pred CCC---ceeeeeehHhhHHHHH
Confidence 986 6899999988776653
No 68
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.80 E-value=4.1e-19 Score=210.30 Aligned_cols=216 Identities=17% Similarity=0.191 Sum_probs=139.6
Q ss_pred CCHHHHHHHHcCCC-C----C--CCccEEEEeCCCccCcC-cchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhcCCC
Q psy1907 1 MTDGTLHREFLSEP-D----L--ASYSVMIIDEAHERTLH-TDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFFDDA 72 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~-~----L--s~~s~iVLDEaHeR~l~-td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~~~ 72 (1320)
+||++++..+.... . + -.+++|||||||...-. .+++..+++.+. ..+.|+|+||||++ +.+.+|+.+.
T Consensus 100 ~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~--~~~~~~i~~SATlp-~~l~~~~~~~ 176 (358)
T TIGR01587 100 CTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK--DNDVPILLMSATLP-KFLKEYAEKI 176 (358)
T ss_pred CCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--HcCCCEEEEecCch-HHHHHHHhcC
Confidence 58999888877521 1 1 23489999999953321 233444444433 34689999999996 4466666432
Q ss_pred CEEEeCC--cccc---e-eEEE--EcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCC
Q psy1907 73 PVFRIPG--RRFP---V-DIYY--TKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKI 144 (1320)
Q Consensus 73 ~vi~i~g--~~~p---V-~~~y--~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~ 144 (1320)
....... ...+ . ...+ ............ ..+... ...++++|||++|.++++.+++.|.+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~--~~~~~~~lVf~~t~~~~~~~~~~L~~~~------- 246 (358)
T TIGR01587 177 GYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSL-ERLLEF--IKKGGKIAIIVNTVDRAQEFYQQLKENA------- 246 (358)
T ss_pred CCcccccCCCCccccccccccceeeccccccCHHHH-HHHHHH--hhCCCeEEEEECCHHHHHHHHHHHHhhc-------
Confidence 2111110 0001 0 1111 111111122221 212222 2236789999999999999999998642
Q ss_pred CCeEEEEecCCCCHHHHHHH----cCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccC
Q psy1907 145 KELIILPVYSNLPTDMQTKI----FLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPIS 220 (1320)
Q Consensus 145 ~~~~v~~LH~~l~~~~r~~i----~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piS 220 (1320)
....+..+||++++.+|.++ ++.|++|..+|||||+++|+||||+ +++||+. +.+
T Consensus 247 ~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~--------------------~~~ 305 (358)
T TIGR01587 247 PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITE--------------------LAP 305 (358)
T ss_pred CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEc--------------------CCC
Confidence 23579999999999999764 8899999999999999999999996 7888864 234
Q ss_pred HhhHHHHhhhcCCCCCCC-CceEEEEecCHH
Q psy1907 221 KASANQRAGVITGFNPLS-DFRGCAHVLGEE 250 (1320)
Q Consensus 221 k~s~~QR~GRAGR~g~g~-~fg~~~~L~~~~ 250 (1320)
.++|+||+||+||.|.+. +-|.+|.+....
T Consensus 306 ~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 306 IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 578999999999987642 224677665543
No 69
>KOG4284|consensus
Probab=99.80 E-value=3.4e-19 Score=208.80 Aligned_cols=217 Identities=15% Similarity=0.200 Sum_probs=178.2
Q ss_pred CHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHH-HHhhcCCCCcEEEEecCcCH---HHHHhhcCCCCEEE
Q psy1907 2 TDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVK-DIVRFRSDLKLLISSATLDA---QKFSEFFDDAPVFR 76 (1320)
Q Consensus 2 T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk-~l~~~r~~~qlIl~SATl~~---~~f~~~f~~~~vi~ 76 (1320)
||||+++.+..+-+ .+++.++|||||| ..+++..+..-+. ++..+++.+|++.+|||.+- +.+++|+.++-++.
T Consensus 150 tPGRi~qL~el~~~n~s~vrlfVLDEAD-kL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr 228 (980)
T KOG4284|consen 150 TPGRIAQLVELGAMNMSHVRLFVLDEAD-KLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVR 228 (980)
T ss_pred CchHHHHHHHhcCCCccceeEEEeccHH-hhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceee
Confidence 89999999988877 9999999999995 5777776655554 45568889999999999953 66889998887777
Q ss_pred eCC---cccceeEEEEcCCccc----hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEE
Q psy1907 77 IPG---RRFPVDIYYTKAPEAD----YIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELII 149 (1320)
Q Consensus 77 i~g---~~~pV~~~y~~~~~~~----~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v 149 (1320)
... ..+.++++|...+..+ -+...+..+-++...-|--..|||++....++.++..|.. .++.+
T Consensus 229 ~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~s---------sG~d~ 299 (980)
T KOG4284|consen 229 FNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKS---------SGLDV 299 (980)
T ss_pred cccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhc---------cCCCe
Confidence 654 3456666665544332 2334556666777777777899999999999999999975 58999
Q ss_pred EEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhh
Q psy1907 150 LPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAG 229 (1320)
Q Consensus 150 ~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~G 229 (1320)
..+.|+|.|.+|..+++..+.-..+||||||+.+||||-|.|..|||-+. |..-..|.||+|
T Consensus 300 ~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~------------------p~d~eTY~HRIG 361 (980)
T KOG4284|consen 300 TFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDA------------------PADEETYFHRIG 361 (980)
T ss_pred EEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCC------------------CcchHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999776 666788999999
Q ss_pred hcCCCCCCCCceEEEEecCH
Q psy1907 230 VITGFNPLSDFRGCAHVLGE 249 (1320)
Q Consensus 230 RAGR~g~g~~fg~~~~L~~~ 249 (1320)
||||.|.- |..+.+.-.
T Consensus 362 RAgRFG~~---G~aVT~~~~ 378 (980)
T KOG4284|consen 362 RAGRFGAH---GAAVTLLED 378 (980)
T ss_pred hccccccc---ceeEEEecc
Confidence 99999985 577776553
No 70
>KOG0350|consensus
Probab=99.79 E-value=1.3e-19 Score=208.47 Aligned_cols=223 Identities=18% Similarity=0.246 Sum_probs=159.0
Q ss_pred CHHHHHHHHcCCCC--CCCccEEEEeCCCccCcCcch------HHHHHH---------HHhh------------------
Q psy1907 2 TDGTLHREFLSEPD--LASYSVMIIDEAHERTLHTDI------LFGLVK---------DIVR------------------ 46 (1320)
Q Consensus 2 T~G~LLr~l~~d~~--Ls~~s~iVLDEaHeR~l~td~------ll~llk---------~l~~------------------ 46 (1320)
|||||.+++-+.+. |+++.++|||||| |.++.-| ++.+++ .+++
T Consensus 277 TPGRLVDHl~~~k~f~Lk~LrfLVIDEAD-Rll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~ 355 (620)
T KOG0350|consen 277 TPGRLVDHLNNTKSFDLKHLRFLVIDEAD-RLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLG 355 (620)
T ss_pred CchHHHHhccCCCCcchhhceEEEechHH-HHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcC
Confidence 99999999987654 9999999999995 6655422 111111 1111
Q ss_pred -cCCCCcEEEEecCc--CHHHHHhhcCCCC-EEEeCC---cccceeE----EEEcCCccchHHHHHHHHHHHHhhCCCCC
Q psy1907 47 -FRSDLKLLISSATL--DAQKFSEFFDDAP-VFRIPG---RRFPVDI----YYTKAPEADYIDACVVSILQIHATQPLGD 115 (1320)
Q Consensus 47 -~r~~~qlIl~SATl--~~~~f~~~f~~~~-vi~i~g---~~~pV~~----~y~~~~~~~~l~~~i~~v~~i~~~~~~g~ 115 (1320)
..+.+.-+++|||+ ++.++.++--+.| ++.+.+ ..|.+.. .++.....- ....+..+.....-.+
T Consensus 356 ~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~----kpl~~~~lI~~~k~~r 431 (620)
T KOG0350|consen 356 KLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKF----KPLAVYALITSNKLNR 431 (620)
T ss_pred CcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeeccccc----chHhHHHHHHHhhcce
Confidence 12234568899999 8888988765555 555542 2222211 111111000 1122333333334568
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEE
Q psy1907 116 ILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVI 195 (1320)
Q Consensus 116 iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VI 195 (1320)
+|+|+++.+.+..++..|.-.+. ...+.+-.+-|+|....|.+.++.|..|.++|+||||+++||||+.+|+.||
T Consensus 432 ~lcf~~S~~sa~Rl~~~L~v~~~-----~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VI 506 (620)
T KOG0350|consen 432 TLCFVNSVSSANRLAHVLKVEFC-----SDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVI 506 (620)
T ss_pred EEEEecchHHHHHHHHHHHHHhc-----cccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEe
Confidence 99999999999999999983221 1345555688999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHHHhhc
Q psy1907 196 DPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEVLRGC 255 (1320)
Q Consensus 196 D~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~~~l 255 (1320)
||+. |.+.-+|+||+||+||+|.. |.||.|.+.++-..|
T Consensus 507 NYd~------------------P~~~ktyVHR~GRTARAgq~---G~a~tll~~~~~r~F 545 (620)
T KOG0350|consen 507 NYDP------------------PASDKTYVHRAGRTARAGQD---GYAITLLDKHEKRLF 545 (620)
T ss_pred ecCC------------------CchhhHHHHhhcccccccCC---ceEEEeeccccchHH
Confidence 9887 77788999999999999987 799999987654433
No 71
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.79 E-value=7.2e-19 Score=231.37 Aligned_cols=204 Identities=19% Similarity=0.186 Sum_probs=143.9
Q ss_pred CHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHH---hhcCCCCEEEeC
Q psy1907 2 TDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFS---EFFDDAPVFRIP 78 (1320)
Q Consensus 2 T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~---~~f~~~~vi~i~ 78 (1320)
||+.| ..+-.++++++|||||+|.. ++ .....+...+++.++++||||+.+..+. .++.+..++..+
T Consensus 710 Tp~lL----~~~v~~~~L~lLVIDEahrf----G~--~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~ 779 (1147)
T PRK10689 710 THKLL----QSDVKWKDLGLLIVDEEHRF----GV--RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATP 779 (1147)
T ss_pred CHHHH----hCCCCHhhCCEEEEechhhc----ch--hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecC
Confidence 67543 22334789999999999953 22 2233344567789999999998664432 233455455544
Q ss_pred C-cccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCC
Q psy1907 79 G-RRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLP 157 (1320)
Q Consensus 79 g-~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~ 157 (1320)
. ...+++.++.........++ .+..+. ..|.++||+|+.+.++.+++.|.+.. +++.+..+||+|+
T Consensus 780 p~~r~~v~~~~~~~~~~~~k~~---il~el~---r~gqv~vf~n~i~~ie~la~~L~~~~-------p~~~v~~lHG~m~ 846 (1147)
T PRK10689 780 PARRLAVKTFVREYDSLVVREA---ILREIL---RGGQVYYLYNDVENIQKAAERLAELV-------PEARIAIGHGQMR 846 (1147)
T ss_pred CCCCCCceEEEEecCcHHHHHH---HHHHHh---cCCeEEEEECCHHHHHHHHHHHHHhC-------CCCcEEEEeCCCC
Confidence 3 23566655543211111111 112222 25789999999999999999998753 4678899999999
Q ss_pred HHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCC
Q psy1907 158 TDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPL 237 (1320)
Q Consensus 158 ~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g 237 (1320)
+.+|.+++..|.+|+.+|||||+++|+|||||++++||-.+-. .| +.++|.||+||+||.|..
T Consensus 847 q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad---~f--------------glaq~~Qr~GRvGR~g~~ 909 (1147)
T PRK10689 847 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD---HF--------------GLAQLHQLRGRVGRSHHQ 909 (1147)
T ss_pred HHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCC---CC--------------CHHHHHHHhhccCCCCCc
Confidence 9999999999999999999999999999999999999921110 01 125799999999999876
Q ss_pred CCceEEEEecC
Q psy1907 238 SDFRGCAHVLG 248 (1320)
Q Consensus 238 ~~fg~~~~L~~ 248 (1320)
|.||.++.
T Consensus 910 ---g~a~ll~~ 917 (1147)
T PRK10689 910 ---AYAWLLTP 917 (1147)
T ss_pred ---eEEEEEeC
Confidence 68998875
No 72
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.79 E-value=1.9e-18 Score=217.39 Aligned_cols=185 Identities=16% Similarity=0.187 Sum_probs=128.7
Q ss_pred CCCccEEEEeCCCccCcCcchHHHHHHHHhhc--CC---CCcEEEEecCcCH--HHHHhhcC-CCCEEEeCCcccce--e
Q psy1907 16 LASYSVMIIDEAHERTLHTDILFGLVKDIVRF--RS---DLKLLISSATLDA--QKFSEFFD-DAPVFRIPGRRFPV--D 85 (1320)
Q Consensus 16 Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~--r~---~~qlIl~SATl~~--~~f~~~f~-~~~vi~i~g~~~pV--~ 85 (1320)
|+++++||||||| ++++|...+.+++... ++ ++|+++||||++. ..+...|. +...+.+....... -
T Consensus 169 L~~v~~LVLDEAD---Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki 245 (844)
T TIGR02621 169 LGQDALIVHDEAH---LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKI 245 (844)
T ss_pred hccceEEEEehhh---hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccce
Confidence 6899999999999 5666666555554432 33 2699999999954 33444443 33333333222211 1
Q ss_pred EEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHH---
Q psy1907 86 IYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQT--- 162 (1320)
Q Consensus 86 ~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~--- 162 (1320)
..|...+...++...+..+..+.. ..++++||||||++.++.+++.|.+. ++ ..|||.|++.+|.
T Consensus 246 ~q~v~v~~e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~---------g~--~lLHG~m~q~dR~~~~ 313 (844)
T TIGR02621 246 VKLVPPSDEKFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKE---------KF--ELLTGTLRGAERDDLV 313 (844)
T ss_pred EEEEecChHHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhc---------CC--eEeeCCCCHHHHhhHH
Confidence 223333333444444444443333 34688999999999999999999763 33 8899999999999
Q ss_pred --HHcCCCCC----CC-------eEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhh
Q psy1907 163 --KIFLPTPP----NA-------RKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAG 229 (1320)
Q Consensus 163 --~i~~~~~~----g~-------~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~G 229 (1320)
++++.|++ |+ .+|||||+++|+||||+. ++||+... ..++|+||+|
T Consensus 314 ~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~a--------------------P~esyIQRiG 372 (844)
T TIGR02621 314 KKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLA--------------------PFESMQQRFG 372 (844)
T ss_pred HHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCC--------------------CHHHHHHHhc
Confidence 77888866 43 789999999999999987 78886321 2489999999
Q ss_pred hcCCCCC
Q psy1907 230 VITGFNP 236 (1320)
Q Consensus 230 RAGR~g~ 236 (1320)
|+||.|.
T Consensus 373 RtgR~G~ 379 (844)
T TIGR02621 373 RVNRFGE 379 (844)
T ss_pred ccCCCCC
Confidence 9999987
No 73
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.79 E-value=1.6e-18 Score=223.62 Aligned_cols=198 Identities=18% Similarity=0.183 Sum_probs=144.7
Q ss_pred CCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhc-C--CCCEEEeC-CcccceeEEE
Q psy1907 13 EPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFF-D--DAPVFRIP-GRRFPVDIYY 88 (1320)
Q Consensus 13 d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f-~--~~~vi~i~-g~~~pV~~~y 88 (1320)
+-.++++++|||||+|..+. .....+...+++.++++||||+.+..+.... + +..++..+ ....|++.++
T Consensus 568 ~v~f~~L~llVIDEahrfgv------~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v 641 (926)
T TIGR00580 568 DVKFKDLGLLIIDEEQRFGV------KQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFV 641 (926)
T ss_pred CCCcccCCEEEeecccccch------hHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEE
Confidence 33489999999999995321 2233344456778999999998776554322 2 33334432 2346777766
Q ss_pred EcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCC
Q psy1907 89 TKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPT 168 (1320)
Q Consensus 89 ~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~ 168 (1320)
..... ..+ ...+.... ...|+++||+|+.++++.+++.|.+.. +++.+..+||+|++.+|.++++.|
T Consensus 642 ~~~~~-~~i---~~~i~~el--~~g~qv~if~n~i~~~e~l~~~L~~~~-------p~~~v~~lHG~m~~~eRe~im~~F 708 (926)
T TIGR00580 642 MEYDP-ELV---REAIRREL--LRGGQVFYVHNRIESIEKLATQLRELV-------PEARIAIAHGQMTENELEEVMLEF 708 (926)
T ss_pred EecCH-HHH---HHHHHHHH--HcCCeEEEEECCcHHHHHHHHHHHHhC-------CCCeEEEecCCCCHHHHHHHHHHH
Confidence 54321 111 11122211 125789999999999999999988642 468899999999999999999999
Q ss_pred CCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecC
Q psy1907 169 PPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLG 248 (1320)
Q Consensus 169 ~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~ 248 (1320)
.+|+.+|||||+++|+|||||++++||..+.+. -+.+++.||+||+||.|.. |.||.+++
T Consensus 709 ~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~-----------------~gls~l~Qr~GRvGR~g~~---g~aill~~ 768 (926)
T TIGR00580 709 YKGEFQVLVCTTIIETGIDIPNANTIIIERADK-----------------FGLAQLYQLRGRVGRSKKK---AYAYLLYP 768 (926)
T ss_pred HcCCCCEEEECChhhcccccccCCEEEEecCCC-----------------CCHHHHHHHhcCCCCCCCC---eEEEEEEC
Confidence 999999999999999999999999999765421 1235789999999999875 69999986
Q ss_pred H
Q psy1907 249 E 249 (1320)
Q Consensus 249 ~ 249 (1320)
.
T Consensus 769 ~ 769 (926)
T TIGR00580 769 H 769 (926)
T ss_pred C
Confidence 4
No 74
>KOG0346|consensus
Probab=99.77 E-value=2.1e-18 Score=195.83 Aligned_cols=215 Identities=20% Similarity=0.236 Sum_probs=167.4
Q ss_pred CHHHHHHHHcCCCC--CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCc--CHHHHHhhcCCCCE-EE
Q psy1907 2 TDGTLHREFLSEPD--LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL--DAQKFSEFFDDAPV-FR 76 (1320)
Q Consensus 2 T~G~LLr~l~~d~~--Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl--~~~~f~~~f~~~~v-i~ 76 (1320)
|||.|++++..+++ +..++++|+|||| -.+.-++-..+-+....+++..|.+|||||+ |...+.+.|-+.|+ +.
T Consensus 152 TP~~ll~~~~~~~~~~~~~l~~LVvDEAD-LllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLk 230 (569)
T KOG0346|consen 152 TPAKLLRHLAAGVLEYLDSLSFLVVDEAD-LLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILK 230 (569)
T ss_pred ChHHHHHHHhhccchhhhheeeEEechhh-hhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEE
Confidence 99999999999885 8999999999995 4455555555666666788999999999999 66788887765554 44
Q ss_pred eCCccc----ceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEe
Q psy1907 77 IPGRRF----PVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPV 152 (1320)
Q Consensus 77 i~g~~~----pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~L 152 (1320)
+..... .+.+++....+.|.+--+ ..++.+..- .|++|||+||.+.+=.+.-.|+.. ++..+.|
T Consensus 231 l~e~el~~~dqL~Qy~v~cse~DKflll-yallKL~LI--~gKsliFVNtIdr~YrLkLfLeqF---------GiksciL 298 (569)
T KOG0346|consen 231 LTEGELPNPDQLTQYQVKCSEEDKFLLL-YALLKLRLI--RGKSLIFVNTIDRCYRLKLFLEQF---------GIKSCIL 298 (569)
T ss_pred eccccCCCcccceEEEEEeccchhHHHH-HHHHHHHHh--cCceEEEEechhhhHHHHHHHHHh---------CcHhhhh
Confidence 443332 355677776666654322 222222222 589999999988777777677653 7788889
Q ss_pred cCCCCHHHHHHHcCCCCCCCeEEEEeCc-----------------------------------ccccCCCCCCccEEEcC
Q psy1907 153 YSNLPTDMQTKIFLPTPPNARKVVLATN-----------------------------------IAETSLTIDNIIYVIDP 197 (1320)
Q Consensus 153 H~~l~~~~r~~i~~~~~~g~~kVlvATd-----------------------------------IAe~gldIp~I~~VID~ 197 (1320)
.|.||..-|..|++.|..|...|||||| =++||||+..|..|||+
T Consensus 299 NseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNF 378 (569)
T KOG0346|consen 299 NSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNF 378 (569)
T ss_pred cccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeec
Confidence 9999999999999999999999999999 14689999999999999
Q ss_pred CCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHH
Q psy1907 198 GFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 198 g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~ 250 (1320)
++ |-+..+|+||+||++|.+.. |.+..+..+.
T Consensus 379 D~------------------P~t~~sYIHRvGRTaRg~n~---GtalSfv~P~ 410 (569)
T KOG0346|consen 379 DF------------------PETVTSYIHRVGRTARGNNK---GTALSFVSPK 410 (569)
T ss_pred CC------------------CCchHHHHHhccccccCCCC---CceEEEecch
Confidence 99 67789999999999999875 5777776644
No 75
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.77 E-value=2.6e-18 Score=217.75 Aligned_cols=348 Identities=16% Similarity=0.134 Sum_probs=220.4
Q ss_pred CHHHHHHHHcCCC-CCCCccEEEEeCCCc-----cCcCcchHHHHHHHHhhcCCCCcEEEEecCc-CHHHHHhhcCCCCE
Q psy1907 2 TDGTLHREFLSEP-DLASYSVMIIDEAHE-----RTLHTDILFGLVKDIVRFRSDLKLLISSATL-DAQKFSEFFDDAPV 74 (1320)
Q Consensus 2 T~G~LLr~l~~d~-~Ls~~s~iVLDEaHe-----R~l~td~ll~llk~l~~~r~~~qlIl~SATl-~~~~f~~~f~~~~v 74 (1320)
||.-+--.+.+.+ ++.++++|||||+|- |+.- +..++.+.....+..|+|.+|||+ |.+.+++|++..++
T Consensus 129 T~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~---lE~iv~r~~~~~~~~rivgLSATlpN~~evA~wL~a~~~ 205 (766)
T COG1204 129 TPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPV---LESIVARMRRLNELIRIVGLSATLPNAEEVADWLNAKLV 205 (766)
T ss_pred chHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCce---ehhHHHHHHhhCcceEEEEEeeecCCHHHHHHHhCCccc
Confidence 4444333333333 378999999999992 4433 344444544555668999999999 99999999975544
Q ss_pred EEeCCcc--------cceeEEEEcCCc---c-chHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhh--
Q psy1907 75 FRIPGRR--------FPVDIYYTKAPE---A-DYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRL-- 140 (1320)
Q Consensus 75 i~i~g~~--------~pV~~~y~~~~~---~-~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l-- 140 (1320)
...-+. +....++..... . ..-+.....+...+. ..|.+|||++++......++.|...+...
T Consensus 206 -~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~--~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~ 282 (766)
T COG1204 206 -ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLA--EGGQVLVFVHSRKEAEKTAKKLRIKMSATLS 282 (766)
T ss_pred -ccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHh--cCCeEEEEEecCchHHHHHHHHHHHHhhcCC
Confidence 212111 111222222111 1 112233333333332 36899999999999999999998422211
Q ss_pred -------cCCCCC-------------------eEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEE
Q psy1907 141 -------GSKIKE-------------------LIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYV 194 (1320)
Q Consensus 141 -------~~~~~~-------------------~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~V 194 (1320)
...... ..+..+|+||+.++|.-+.+.|+.|++|||+||+.++.|++.|.-.+|
T Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VI 362 (766)
T COG1204 283 DDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVI 362 (766)
T ss_pred hhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEE
Confidence 111111 235668999999999999999999999999999999999999998877
Q ss_pred EcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEec-CHH---HHhhcccccCCccccCCcch
Q psy1907 195 IDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVL-GEE---VLRGCAHVLGEEVLRPEVSQ 270 (1320)
Q Consensus 195 ID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~-~~~---~~~~l~~~~~pei~~~~l~~ 270 (1320)
|- ....|++..| .+++++.++.|+.|||||.|-. .+|..+.+. +.. .+........|+...+.+.
T Consensus 363 Ik----~~~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d-~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~- 431 (766)
T COG1204 363 IK----DTRRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYD-DYGEAIILATSHDELEYLAELYIQSEPEPIESKLG- 431 (766)
T ss_pred Ee----eeEEEcCCCC-----eEECchhhHhhccCcCCCCCcC-CCCcEEEEecCccchhHHHHHhhccCcchHHHhhc-
Confidence 73 2456777333 5799999999999999999864 344444444 322 2222333344444333331
Q ss_pred hhhhhccccccccccccccccccceecccccccccchhh---hhhcCCC-----hh-hhhhhcccc--------------
Q psy1907 271 PFRSFGYLGVMQDCRYIGTYLVGFIWHWKNHYIQDQTLV---TFMLTHL-----PT-TYIKRKSSE-------------- 327 (1320)
Q Consensus 271 ~~L~~~~l~~~~~~~~~~~~~~~~il~~~~l~~~d~~~f---~~~~~p~-----~~-~~~~~~~~L-------------- 327 (1320)
+..-+++++.+++..--...|.+...| .|..+.. .. .+..++..|
T Consensus 432 ------------~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~ 499 (766)
T COG1204 432 ------------DELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILDADWEAL 499 (766)
T ss_pred ------------ccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceeecccccc
Confidence 111244556667666666677777666 3333331 11 122222222
Q ss_pred --ccccccccccccCchhhhhhc--ccccch-hHHHHHhhccccccccceeeeccC
Q psy1907 328 --YKVGNGEDSFCVSPLYNLTIQ--SSSFQS-ITIQCFASLQLHHPVIQLFTILPS 378 (1320)
Q Consensus 328 --~~lG~~~~~~~v~p~~~~~l~--~~~~~~-l~~~~~~~~~~~~p~~~~~~i~~~ 378 (1320)
|.+|..++.++++|..++.+. ...+.. .+....+++.+++|++..+....-
T Consensus 500 ~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd~~~~~~~~~ 555 (766)
T COG1204 500 HATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMPIKLRER 555 (766)
T ss_pred chhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcCccchhhhhhhh
Confidence 777999999999999999965 222222 477788889999999887665543
No 76
>KOG0344|consensus
Probab=99.76 E-value=3.9e-18 Score=201.13 Aligned_cols=217 Identities=16% Similarity=0.161 Sum_probs=161.8
Q ss_pred CHHHHHHHHcCCC---CCCCccEEEEeCCCccCcCc-chHHHHHHHHhh-cCCCCcEEEEecCcC--HHHHHhhcCCCCE
Q psy1907 2 TDGTLHREFLSEP---DLASYSVMIIDEAHERTLHT-DILFGLVKDIVR-FRSDLKLLISSATLD--AQKFSEFFDDAPV 74 (1320)
Q Consensus 2 T~G~LLr~l~~d~---~Ls~~s~iVLDEaHeR~l~t-d~ll~llk~l~~-~r~~~qlIl~SATl~--~~~f~~~f~~~~v 74 (1320)
||-++...+..++ .|+.+.++|+|||| +..+- .|...+-..+.. ..++.++-+||||++ .+.++.--...++
T Consensus 269 TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~ 347 (593)
T KOG0344|consen 269 TPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-LLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLK 347 (593)
T ss_pred CHHHHHHHhcCCCccchhheeeeEeechHH-hhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccce
Confidence 8889888887776 49999999999995 54444 333333333332 347888999999994 4566664433333
Q ss_pred EEeCCccc----ceeE--EEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeE
Q psy1907 75 FRIPGRRF----PVDI--YYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELI 148 (1320)
Q Consensus 75 i~i~g~~~----pV~~--~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~ 148 (1320)
..+-|.+. .|++ .|... +. ..+..+.++....-+..+|||+.+.+.+..+...|.. .+++.
T Consensus 348 ~vivg~~~sa~~~V~QelvF~gs-e~----~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~--------~~~i~ 414 (593)
T KOG0344|consen 348 RVIVGLRNSANETVDQELVFCGS-EK----GKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEI--------YDNIN 414 (593)
T ss_pred eEEEecchhHhhhhhhhheeeec-ch----hHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhh--------ccCcc
Confidence 33334321 2222 22221 11 1233344444444456799999999999998888852 26889
Q ss_pred EEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHh
Q psy1907 149 ILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRA 228 (1320)
Q Consensus 149 v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~ 228 (1320)
|-.+||..++.+|..+++.|+.|++.|++|||+++||||+-||..|||+|+ |-|.-+|+||+
T Consensus 415 v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~------------------p~s~~syihrI 476 (593)
T KOG0344|consen 415 VDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDF------------------PQSDLSYIHRI 476 (593)
T ss_pred eeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCC------------------CchhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998 66778999999
Q ss_pred hhcCCCCCCCCceEEEEecCHHHHh
Q psy1907 229 GVITGFNPLSDFRGCAHVLGEEVLR 253 (1320)
Q Consensus 229 GRAGR~g~g~~fg~~~~L~~~~~~~ 253 (1320)
||+||.|++ |.+|.+|++++..
T Consensus 477 GRtgRag~~---g~Aitfytd~d~~ 498 (593)
T KOG0344|consen 477 GRTGRAGRS---GKAITFYTDQDMP 498 (593)
T ss_pred hccCCCCCC---cceEEEeccccch
Confidence 999999998 7999999986553
No 77
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.76 E-value=2.5e-18 Score=199.98 Aligned_cols=213 Identities=17% Similarity=0.169 Sum_probs=163.5
Q ss_pred HHHcC-CCCCCCccEEEEeCCC-----ccCcCcchHHHHHHHHhhcCCCCcEEEEecCc-CHHHHHhhcCCCCEEEeCCc
Q psy1907 8 REFLS-EPDLASYSVMIIDEAH-----ERTLHTDILFGLVKDIVRFRSDLKLLISSATL-DAQKFSEFFDDAPVFRIPGR 80 (1320)
Q Consensus 8 r~l~~-d~~Ls~~s~iVLDEaH-----eR~l~td~ll~llk~l~~~r~~~qlIl~SATl-~~~~f~~~f~~~~vi~i~g~ 80 (1320)
+.++. ...|.++.+|||||+| ||+...|-+.+-|+. +.++-|+|.+|||+ |++.+++.+ ++..+..+++
T Consensus 327 D~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~---l~~~AQ~i~LSATVgNp~elA~~l-~a~lV~y~~R 402 (830)
T COG1202 327 DYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRY---LFPGAQFIYLSATVGNPEELAKKL-GAKLVLYDER 402 (830)
T ss_pred HHHHHcCCcccccceEEeeeeeeccchhcccchhhHHHHHHH---hCCCCeEEEEEeecCChHHHHHHh-CCeeEeecCC
Confidence 44444 3669999999999999 577776655555554 56789999999999 999999999 5667777899
Q ss_pred ccceeEEEEcCC-ccchHHHHHHHHH----HHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCC
Q psy1907 81 RFPVDIYYTKAP-EADYIDACVVSIL----QIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSN 155 (1320)
Q Consensus 81 ~~pV~~~y~~~~-~~~~l~~~i~~v~----~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~ 155 (1320)
+.|++-|.+-.. ..++.+-...++- ......-.|+.|||.+|+..++.++..|.. .++...|+|+|
T Consensus 403 PVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~---------kG~~a~pYHaG 473 (830)
T COG1202 403 PVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTG---------KGLKAAPYHAG 473 (830)
T ss_pred CCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhc---------CCcccccccCC
Confidence 999887654433 3333332222221 122233369999999999999999999986 48999999999
Q ss_pred CCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCC
Q psy1907 156 LPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFN 235 (1320)
Q Consensus 156 l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g 235 (1320)
|++.+|.++...|..+...+||+|-.++.|+|+|.-.++.++= .+...|+|..++.|+.|||||.+
T Consensus 474 L~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsL--------------aMG~~WLs~~EF~QM~GRAGRp~ 539 (830)
T COG1202 474 LPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESL--------------AMGIEWLSVREFQQMLGRAGRPD 539 (830)
T ss_pred CcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHH--------------HcccccCCHHHHHHHhcccCCCC
Confidence 9999999999999999999999999999999999877555431 23467999999999999999976
Q ss_pred CCCCceEEEEecC
Q psy1907 236 PLSDFRGCAHVLG 248 (1320)
Q Consensus 236 ~g~~fg~~~~L~~ 248 (1320)
-- --|.+|.+.-
T Consensus 540 yH-drGkVyllve 551 (830)
T COG1202 540 YH-DRGKVYLLVE 551 (830)
T ss_pred cc-cCceEEEEec
Confidence 30 0135555543
No 78
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.75 E-value=1.9e-17 Score=209.45 Aligned_cols=207 Identities=15% Similarity=0.136 Sum_probs=139.0
Q ss_pred CHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHh-hcCCCCEEE---e
Q psy1907 2 TDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSE-FFDDAPVFR---I 77 (1320)
Q Consensus 2 T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~-~f~~~~vi~---i 77 (1320)
|++++.+ +-.++++++|||||+|..+... ...+..........++++||||..+..+.. .+++..+.. .
T Consensus 345 T~~ll~~----~~~~~~l~lvVIDEaH~fg~~q---r~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~ 417 (630)
T TIGR00643 345 THALIQE----KVEFKRLALVIIDEQHRFGVEQ---RKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDEL 417 (630)
T ss_pred cHHHHhc----cccccccceEEEechhhccHHH---HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccC
Confidence 6666532 2347899999999999532211 111221111112578999999986655433 233322222 2
Q ss_pred CCcccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHH--------HHHHHHHHHHHHHHhhcCCCCCeEE
Q psy1907 78 PGRRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQE--------EIETCNEILQDRVRRLGSKIKELII 149 (1320)
Q Consensus 78 ~g~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~--------eie~l~~~L~~~~~~l~~~~~~~~v 149 (1320)
+....|+...+..... .+..+..+.... ...++++||+|..+ .++.+++.|.+. .+++.+
T Consensus 418 p~~r~~i~~~~~~~~~---~~~~~~~i~~~l--~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~-------~~~~~v 485 (630)
T TIGR00643 418 PPGRKPITTVLIKHDE---KDIVYEFIEEEI--AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKA-------FPKYNV 485 (630)
T ss_pred CCCCCceEEEEeCcch---HHHHHHHHHHHH--HhCCcEEEEEccccccccchHHHHHHHHHHHHhh-------CCCCcE
Confidence 3334577776654322 133333222221 22468999999764 344555555542 256789
Q ss_pred EEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhh
Q psy1907 150 LPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAG 229 (1320)
Q Consensus 150 ~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~G 229 (1320)
..+||+|++++|..+++.|++|..+|||||+++|+|||+|++++||+++.++ .+.+++.||+|
T Consensus 486 ~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r-----------------~gls~lhQ~~G 548 (630)
T TIGR00643 486 GLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAER-----------------FGLSQLHQLRG 548 (630)
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCc-----------------CCHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999876532 13478999999
Q ss_pred hcCCCCCCCCceEEEEec
Q psy1907 230 VITGFNPLSDFRGCAHVL 247 (1320)
Q Consensus 230 RAGR~g~g~~fg~~~~L~ 247 (1320)
||||.|.. |.||.++
T Consensus 549 RvGR~g~~---g~~il~~ 563 (630)
T TIGR00643 549 RVGRGDHQ---SYCLLVY 563 (630)
T ss_pred hcccCCCC---cEEEEEE
Confidence 99999865 5899988
No 79
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.74 E-value=2.4e-17 Score=209.78 Aligned_cols=205 Identities=16% Similarity=0.156 Sum_probs=141.4
Q ss_pred CHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHh-hcCCCCEEEe---
Q psy1907 2 TDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSE-FFDDAPVFRI--- 77 (1320)
Q Consensus 2 T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~-~f~~~~vi~i--- 77 (1320)
|++++.+ .-.++++++|||||+|.-+. ..-..+.......++++||||..+..+.. ++++..+..+
T Consensus 371 T~~ll~~----~v~~~~l~lvVIDE~Hrfg~------~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~ 440 (681)
T PRK10917 371 THALIQD----DVEFHNLGLVIIDEQHRFGV------EQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDEL 440 (681)
T ss_pred hHHHhcc----cchhcccceEEEechhhhhH------HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecC
Confidence 6766532 22488999999999995321 11222223344578999999987655433 3444433333
Q ss_pred CCcccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHH--------HHHHHHHHHHHHHHhhcCCCCCeEE
Q psy1907 78 PGRRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQE--------EIETCNEILQDRVRRLGSKIKELII 149 (1320)
Q Consensus 78 ~g~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~--------eie~l~~~L~~~~~~l~~~~~~~~v 149 (1320)
+....|+...+...... +..+..+.... ...++++||+|..+ .++.+++.|.+. .+++.+
T Consensus 441 p~~r~~i~~~~~~~~~~---~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~-------~~~~~v 508 (681)
T PRK10917 441 PPGRKPITTVVIPDSRR---DEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEA-------FPELRV 508 (681)
T ss_pred CCCCCCcEEEEeCcccH---HHHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHH-------CCCCcE
Confidence 23345676666553322 33333333332 23568999999644 445555555543 234789
Q ss_pred EEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhh
Q psy1907 150 LPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAG 229 (1320)
Q Consensus 150 ~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~G 229 (1320)
..+||+|++++|..+++.|++|+.+|||||+++|+|||||++++||+++.++ -+.+++.||+|
T Consensus 509 ~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r-----------------~gls~lhQ~~G 571 (681)
T PRK10917 509 GLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAER-----------------FGLAQLHQLRG 571 (681)
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCC-----------------CCHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999876532 12467899999
Q ss_pred hcCCCCCCCCceEEEEecC
Q psy1907 230 VITGFNPLSDFRGCAHVLG 248 (1320)
Q Consensus 230 RAGR~g~g~~fg~~~~L~~ 248 (1320)
|+||.|.. |.||.+++
T Consensus 572 RvGR~g~~---g~~ill~~ 587 (681)
T PRK10917 572 RVGRGAAQ---SYCVLLYK 587 (681)
T ss_pred cccCCCCc---eEEEEEEC
Confidence 99999865 68999885
No 80
>PRK01172 ski2-like helicase; Provisional
Probab=99.74 E-value=1.3e-16 Score=204.08 Aligned_cols=122 Identities=20% Similarity=0.219 Sum_probs=93.4
Q ss_pred CChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeE
Q psy1907 670 PIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGY 749 (1320)
Q Consensus 670 Pi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY 749 (1320)
..++.+.+.++++.+++.++|++|||||||+...+.+++.... ++ ++++.-|.|.-|...++.+.. + ..+|..|++
T Consensus 22 ~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-~~-k~v~i~P~raLa~q~~~~~~~-l-~~~g~~v~~ 97 (674)
T PRK01172 22 ELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-GL-KSIYIVPLRSLAMEKYEELSR-L-RSLGMRVKI 97 (674)
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh-CC-cEEEEechHHHHHHHHHHHHH-H-hhcCCeEEE
Confidence 3588889999999999999999999999999998888775432 23 455555999777777766653 2 246778887
Q ss_pred EeecCccCC---CCccEEEEccHHHHHHHhcCCC-CCCccEEEEcccccc
Q psy1907 750 AIRFEDCTS---ERTIIKYMTDGTLHREFLSEPD-LASYSVMIIDEAHPK 795 (1320)
Q Consensus 750 ~irfe~~~s---~~T~i~y~TdG~Llrel~~dp~-L~~ys~iIiDE~HER 795 (1320)
.+..-+... .+..|+++|.|.+...+..++. +.++++|||||||..
T Consensus 98 ~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l 147 (674)
T PRK01172 98 SIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHII 147 (674)
T ss_pred EeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhc
Confidence 765332221 3578999999998888777774 899999999999953
No 81
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.73 E-value=4.5e-17 Score=192.77 Aligned_cols=183 Identities=18% Similarity=0.237 Sum_probs=124.4
Q ss_pred CCCccEEEEeCCCccCcCcc-hHH---HHHHHHhhcCCCCcEEEEecCcCHH---HHHhh-cCCCCEEEeCCc--cc---
Q psy1907 16 LASYSVMIIDEAHERTLHTD-ILF---GLVKDIVRFRSDLKLLISSATLDAQ---KFSEF-FDDAPVFRIPGR--RF--- 82 (1320)
Q Consensus 16 Ls~~s~iVLDEaHeR~l~td-~ll---~llk~l~~~r~~~qlIl~SATl~~~---~f~~~-f~~~~vi~i~g~--~~--- 82 (1320)
+.++++||+||+|..+...+ .+. ...+.+.......++|+||||++.. .+.+. +.+.+++.+.|. .+
T Consensus 143 ~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~ 222 (357)
T TIGR03158 143 YTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDN 222 (357)
T ss_pred hcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCC
Confidence 68999999999998665332 222 3333333233357999999999764 23332 124567777776 11
Q ss_pred -----------------ceeEEEEcCCc--cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCC
Q psy1907 83 -----------------PVDIYYTKAPE--ADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSK 143 (1320)
Q Consensus 83 -----------------pV~~~y~~~~~--~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~ 143 (1320)
++++.+...+. ...+......+.......+++++|||++|+..++.++..|.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~------- 295 (357)
T TIGR03158 223 PELEADNKTQSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQ------- 295 (357)
T ss_pred hhhhccccccccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhh-------
Confidence 35554544221 1122223333333333345678999999999999999999863
Q ss_pred CCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhh
Q psy1907 144 IKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKAS 223 (1320)
Q Consensus 144 ~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s 223 (1320)
..++.+..+||.+++.+|.++. +..||||||++|+||||+++ +|| +. |.+.++
T Consensus 296 ~~~~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi-~~-------------------p~~~~~ 348 (357)
T TIGR03158 296 GLGDDIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLI-FS-------------------ARDAAA 348 (357)
T ss_pred CCCceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEE-EC-------------------CCCHHH
Confidence 0245788899999999998764 57899999999999999987 555 21 456789
Q ss_pred HHHHhhhcC
Q psy1907 224 ANQRAGVIT 232 (1320)
Q Consensus 224 ~~QR~GRAG 232 (1320)
|+||+||+|
T Consensus 349 yiqR~GR~g 357 (357)
T TIGR03158 349 FWQRLGRLG 357 (357)
T ss_pred HhhhcccCC
Confidence 999999998
No 82
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.71 E-value=8.8e-17 Score=201.50 Aligned_cols=215 Identities=18% Similarity=0.139 Sum_probs=159.4
Q ss_pred CHHHHHHHHcCCC---CCCCccEEEEeCCCc-----cCcCcchHHHHHHHHhhcCCCCcEEEEecCc-CHHHHHhhcCCC
Q psy1907 2 TDGTLHREFLSEP---DLASYSVMIIDEAHE-----RTLHTDILFGLVKDIVRFRSDLKLLISSATL-DAQKFSEFFDDA 72 (1320)
Q Consensus 2 T~G~LLr~l~~d~---~Ls~~s~iVLDEaHe-----R~l~td~ll~llk~l~~~r~~~qlIl~SATl-~~~~f~~~f~~~ 72 (1320)
||+.|.-.+.+.. .|+++.+|||||+|+ |+.+.-+.+.-|+.+ -+++|.|.+|||+ +++..++|+.+.
T Consensus 130 TPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l---~~~~qRIGLSATV~~~~~varfL~g~ 206 (814)
T COG1201 130 TPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLREL---AGDFQRIGLSATVGPPEEVAKFLVGF 206 (814)
T ss_pred ChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhh---CcccEEEeehhccCCHHHHHHHhcCC
Confidence 7888666555433 389999999999995 655554444444444 3389999999999 889999999654
Q ss_pred ----CEEEeCC-cccceeEEEEcCCcc---chHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCC
Q psy1907 73 ----PVFRIPG-RRFPVDIYYTKAPEA---DYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKI 144 (1320)
Q Consensus 73 ----~vi~i~g-~~~pV~~~y~~~~~~---~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~ 144 (1320)
.++.+.+ +...+++........ .-...++..+..+.... ..+|||+||+..+|.++..|.+..
T Consensus 207 ~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~------- 277 (814)
T COG1201 207 GDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLG------- 277 (814)
T ss_pred CCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhc-------
Confidence 4565554 333344443322211 12234555555555443 479999999999999999998752
Q ss_pred CCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhH
Q psy1907 145 KELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASA 224 (1320)
Q Consensus 145 ~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~ 224 (1320)
...+..+||+|+.++|..+.+.+++|..|+||||.-+|.||||.+|+.||+++= |-+.+.+
T Consensus 278 -~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~S------------------P~sV~r~ 338 (814)
T COG1201 278 -PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGS------------------PKSVNRF 338 (814)
T ss_pred -CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCC------------------cHHHHHH
Confidence 368899999999999999999999999999999999999999999999998765 6678999
Q ss_pred HHHhhhcCCCCCCCCceEEEEec
Q psy1907 225 NQRAGVITGFNPLSDFRGCAHVL 247 (1320)
Q Consensus 225 ~QR~GRAGR~g~g~~fg~~~~L~ 247 (1320)
.||+||+|+.-.+..=|..|...
T Consensus 339 lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 339 LQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred hHhccccccccCCcccEEEEecC
Confidence 99999999754432224444333
No 83
>KOG0337|consensus
Probab=99.69 E-value=4.4e-17 Score=184.56 Aligned_cols=196 Identities=19% Similarity=0.184 Sum_probs=146.2
Q ss_pred CHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHH--HHHh-hcCCCCEEEe
Q psy1907 2 TDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQ--KFSE-FFDDAPVFRI 77 (1320)
Q Consensus 2 T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~--~f~~-~f~~~~vi~i 77 (1320)
|||+++.....-.+ |+.+.+||+||| +|...++|-..+-+.+.+.+.++|+++||||++-. .|++ -+.++..+.+
T Consensus 147 Tpgr~~h~~vem~l~l~sveyVVfdEa-drlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRl 225 (529)
T KOG0337|consen 147 TPGRLLHLGVEMTLTLSSVEYVVFDEA-DRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRL 225 (529)
T ss_pred cCceeeeeehheeccccceeeeeehhh-hHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEe
Confidence 88888765543333 999999999999 58999999988888888999999999999999643 3443 2222323332
Q ss_pred C--Ccc-cceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecC
Q psy1907 78 P--GRR-FPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYS 154 (1320)
Q Consensus 78 ~--g~~-~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~ 154 (1320)
+ ..- -.++..|...+..++..+++..+-.+ ..+...+||++|..++|.+...|.. .++.+-.+||
T Consensus 226 dvetkise~lk~~f~~~~~a~K~aaLl~il~~~---~~~~~t~vf~~tk~hve~~~~ll~~---------~g~~~s~iys 293 (529)
T KOG0337|consen 226 DVETKISELLKVRFFRVRKAEKEAALLSILGGR---IKDKQTIVFVATKHHVEYVRGLLRD---------FGGEGSDIYS 293 (529)
T ss_pred ehhhhcchhhhhheeeeccHHHHHHHHHHHhcc---ccccceeEEecccchHHHHHHHHHh---------cCCCcccccc
Confidence 2 111 12233344444444433332222221 1134699999999999999999886 3677888999
Q ss_pred CCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCC-CccccccCCCC
Q psy1907 155 NLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGF-CKQNNFNSRTG 210 (1320)
Q Consensus 155 ~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~-~k~~~yd~~~g 210 (1320)
+|.+..|..-+..|..++..++|.||+|+||+|||..+-|||+++ ++.+.|.|+.|
T Consensus 294 slD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVg 350 (529)
T KOG0337|consen 294 SLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVG 350 (529)
T ss_pred ccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEec
Confidence 999999999999999999999999999999999999999999999 66777766655
No 84
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.69 E-value=9.7e-18 Score=166.26 Aligned_cols=101 Identities=45% Similarity=0.794 Sum_probs=80.9
Q ss_pred HHHHHHHHhhhccccCC-----------C--ccchHHHHHHHhccccchhhcccCCCcccccCCceEEECCCCCCCccCC
Q psy1907 1025 EQLIGLVQRVEMELVSN-----------P--TETVNIRKAITAGYFYHIAKLSKSGSYKTAKHNQTVMIHPNSSLFEELP 1091 (1320)
Q Consensus 1025 ~QL~~~l~r~~~~~~s~-----------~--~~~~~i~kal~aG~~~nvA~l~~~g~y~t~~~~~~v~iHPsS~l~~~~p 1091 (1320)
+||.++|+++++...+. . .+...|++||++|||+|+|+++++|.|+++..+..|+|||+|++++..|
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~~~~p 80 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLFKKPP 80 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTTTTT-
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCCCCCEEEecCCCEEEEecCcccccccc
Confidence 58889998887743321 0 3457899999999999999999889999998888999999999999999
Q ss_pred cccchhhhhcchHhHhhheeeeChhchHhhcCCC
Q psy1907 1092 RWVLYHELVFTTKEFMRQVTEIESKWLLEVAPHY 1125 (1320)
Q Consensus 1092 ~~vvy~elv~Tsk~y~r~vt~I~~~wLle~ap~~ 1125 (1320)
+||+|+|++.|+|.|||+|++|+++||++++|+|
T Consensus 81 ~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~~~~ 114 (114)
T PF07717_consen 81 KWVVYHELVRTSKPYMRDVTAISPEWLLLFAPHY 114 (114)
T ss_dssp SEEEEEEEEESSSEEEEEEEE--HHHHHHH-TTT
T ss_pred ccchhhhheecCCcEEEECcCCCHHHHHHHcccC
Confidence 9999999999999999999999999999999986
No 85
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.63 E-value=2.6e-16 Score=153.04 Aligned_cols=91 Identities=48% Similarity=0.758 Sum_probs=66.8
Q ss_pred HHHHHHHHccccCCCCCccccccccccccCChhhHHHHHhhhhccchHHHHHHHhhcccCCccccCChhHHHHH--HHHH
Q psy1907 900 LALEQLYALGALNHHGDLTKLGRRMAEFPLDPMMGKMLLASEKYKCVEEIVTIASMLSVNGAIFYRPKDKIIHA--DTAR 977 (1320)
Q Consensus 900 ~Ale~L~~LgAld~~g~LT~lG~~ma~lPldP~laK~Ll~s~~~~c~~e~ltIaA~Lsv~~~~f~~p~~~~~~a--~~~r 977 (1320)
+|++.|+.+||||++|+||++|+.|+.||++|++||||+.|..++|.+++++|+|+||++ ++|..|.++.... ++.+
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~-~~f~~~~~~~~~~~~~~~~ 79 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVR-SPFINPDDKEENAEQDNAK 79 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS---B---CCGHHHHHH--HH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCC-CcccCccHHHHHHHHHHHH
Confidence 488999999999999999999999999999999999999999999999999999999994 6888875443322 2344
Q ss_pred hh---------hcccCCCHHHHH
Q psy1907 978 KN---------FFMLGGDHLVLL 991 (1320)
Q Consensus 978 ~~---------f~~~~gDhltll 991 (1320)
.+ +.+..|||+|+|
T Consensus 80 ~~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 80 KKFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp HTT----------BTTBHHHHHH
T ss_pred HHhhhhhcccccCCCCCCHHhcC
Confidence 44 467789999986
No 86
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.62 E-value=2.6e-15 Score=182.48 Aligned_cols=206 Identities=16% Similarity=0.084 Sum_probs=145.6
Q ss_pred CCCccEEEEeCCCccCcCc-chHHH--HHHHHhhcCCCCcEEEEecCcCHHH---HHhhc-CCCCEEEeCCcccceeEEE
Q psy1907 16 LASYSVMIIDEAHERTLHT-DILFG--LVKDIVRFRSDLKLLISSATLDAQK---FSEFF-DDAPVFRIPGRRFPVDIYY 88 (1320)
Q Consensus 16 Ls~~s~iVLDEaHeR~l~t-d~ll~--llk~l~~~r~~~qlIl~SATl~~~~---f~~~f-~~~~vi~i~g~~~pV~~~y 88 (1320)
--.++.+||||||.=+-.. ||=-+ -+..+....++..++.++||-+... +.+-+ .+.+.+.+.+-.-| .++|
T Consensus 129 ~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRp-Ni~~ 207 (590)
T COG0514 129 RLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRP-NLAL 207 (590)
T ss_pred hCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCc-hhhh
Confidence 3578999999999422111 22111 1222333345778999999997643 33333 23332222221111 2233
Q ss_pred EcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCC
Q psy1907 89 TKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPT 168 (1320)
Q Consensus 89 ~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~ 168 (1320)
...+..+-.+... .+.. ......+..||||.|+..+|.+++.|.. .++.+.++||||..++|..+.+.|
T Consensus 208 ~v~~~~~~~~q~~-fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~---------~g~~a~~YHaGl~~~eR~~~q~~f 276 (590)
T COG0514 208 KVVEKGEPSDQLA-FLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRK---------NGISAGAYHAGLSNEERERVQQAF 276 (590)
T ss_pred hhhhcccHHHHHH-HHHh-hccccCCCeEEEEeeHHhHHHHHHHHHH---------CCCceEEecCCCCHHHHHHHHHHH
Confidence 2222221122211 2222 2234456689999999999999999987 389999999999999999999999
Q ss_pred CCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecC
Q psy1907 169 PPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLG 248 (1320)
Q Consensus 169 ~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~ 248 (1320)
-++..+|||||+.--.|||-|||++||++++ |-|.++|.|=+|||||-|.- -.|+.||+
T Consensus 277 ~~~~~~iiVAT~AFGMGIdKpdVRfViH~~l------------------P~s~EsYyQE~GRAGRDG~~---a~aill~~ 335 (590)
T COG0514 277 LNDEIKVMVATNAFGMGIDKPDVRFVIHYDL------------------PGSIESYYQETGRAGRDGLP---AEAILLYS 335 (590)
T ss_pred hcCCCcEEEEeccccCccCCCCceEEEEecC------------------CCCHHHHHHHHhhccCCCCc---ceEEEeec
Confidence 9999999999999999999999999999998 77889999999999999875 38999999
Q ss_pred HHHHhh
Q psy1907 249 EEVLRG 254 (1320)
Q Consensus 249 ~~~~~~ 254 (1320)
+++...
T Consensus 336 ~~D~~~ 341 (590)
T COG0514 336 PEDIRW 341 (590)
T ss_pred cccHHH
Confidence 887654
No 87
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.61 E-value=7.1e-15 Score=171.53 Aligned_cols=113 Identities=18% Similarity=0.113 Sum_probs=88.4
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEE-----ecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccC
Q psy1907 111 QPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILP-----VYSNLPTDMQTKIFLPTPPNARKVVLATNIAETS 185 (1320)
Q Consensus 111 ~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~-----LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~g 185 (1320)
.+..+||||..-++.++.+...|.+.. .... ..++. .-.||+|.+|..+++.|+.|..+|||||.|+|-|
T Consensus 364 ~~~~RvIVFT~yRdTae~i~~~L~~~~----~~~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEG 438 (542)
T COG1111 364 NGDSRVIVFTEYRDTAEEIVNFLKKIG----IKAR-VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEG 438 (542)
T ss_pred CCCceEEEEehhHhHHHHHHHHHHhcC----Ccce-eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEccccccc
Confidence 334689999999999999999998742 1111 11111 1257999999999999999999999999999999
Q ss_pred CCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHH
Q psy1907 186 LTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 186 ldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~ 250 (1320)
||||++++||=|..+ .|.=-++||.|||||..+| .+|.|.++.
T Consensus 439 LDIp~vDlVifYEpv------------------pSeIR~IQR~GRTGR~r~G----rv~vLvt~g 481 (542)
T COG1111 439 LDIPEVDLVIFYEPV------------------PSEIRSIQRKGRTGRKRKG----RVVVLVTEG 481 (542)
T ss_pred CCCCcccEEEEecCC------------------cHHHHHHHhhCccccCCCC----eEEEEEecC
Confidence 999999999965431 2344679999999999998 566676654
No 88
>KOG0349|consensus
Probab=99.61 E-value=9.8e-16 Score=173.00 Aligned_cols=218 Identities=16% Similarity=0.211 Sum_probs=143.0
Q ss_pred CHHHHHHHHcCCCC-CCCccEEEEeCCCcc--CcCcchHHHHHHHHhhcC---CCCcEEEEecCc---CHHHHHhhcCCC
Q psy1907 2 TDGTLHREFLSEPD-LASYSVMIIDEAHER--TLHTDILFGLVKDIVRFR---SDLKLLISSATL---DAQKFSEFFDDA 72 (1320)
Q Consensus 2 T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR--~l~td~ll~llk~l~~~r---~~~qlIl~SATl---~~~~f~~~f~~~ 72 (1320)
|||||++.+...-. |++..++|+|||+-- ..++|++.-+-+.|-+.. ..+|.+++|||+ ++.++++-.-.-
T Consensus 346 tpgRl~~~is~g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhf 425 (725)
T KOG0349|consen 346 TPGRLLQPISKGLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHF 425 (725)
T ss_pred CchhhhhhhhccceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccC
Confidence 89999998876554 899999999999631 134555555554444332 347899999999 344444311111
Q ss_pred C-EEEeCCc-ccceeEEE----------------------EcCC----------ccchHHHHHHHH------HHHHhhCC
Q psy1907 73 P-VFRIPGR-RFPVDIYY----------------------TKAP----------EADYIDACVVSI------LQIHATQP 112 (1320)
Q Consensus 73 ~-vi~i~g~-~~pV~~~y----------------------~~~~----------~~~~l~~~i~~v------~~i~~~~~ 112 (1320)
| -+...|. ..|-.++. .+.+ .+.....++.++ ..| ....
T Consensus 426 ptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai-~~h~ 504 (725)
T KOG0349|consen 426 PTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAI-RRHA 504 (725)
T ss_pred ceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhh-hhhc
Confidence 1 0111110 00100000 0000 011112222221 112 1222
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCcc
Q psy1907 113 LGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNII 192 (1320)
Q Consensus 113 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~ 192 (1320)
-.+.+|||.|+.+++.+-+++.+.. -..++++.+||+..+.+|...++.|+.+..|.+||||+|+|||||.|+-
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkg------g~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p 578 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKG------GKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLP 578 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcC------CccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCc
Confidence 4679999999999999999888742 2579999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEec
Q psy1907 193 YVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVL 247 (1320)
Q Consensus 193 ~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~ 247 (1320)
||||--+ |-.+..|+||+||+||...= |.++.|.
T Consensus 579 ~~invtl------------------pd~k~nyvhrigrvgraerm---glaislv 612 (725)
T KOG0349|consen 579 FMINVTL------------------PDDKTNYVHRIGRVGRAERM---GLAISLV 612 (725)
T ss_pred eEEEEec------------------Ccccchhhhhhhccchhhhc---ceeEEEe
Confidence 9999766 44556788888888886542 3555554
No 89
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.61 E-value=1.2e-14 Score=179.54 Aligned_cols=212 Identities=15% Similarity=0.152 Sum_probs=138.6
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHH-----HHHhhcCCCCEE
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQ-----KFSEFFDDAPVF 75 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~-----~f~~~f~~~~vi 75 (1320)
.|++.|.+.. ..+++++++||+||||. .... -+..+++ ..++..+++.||||+... .+..+|+. ...
T Consensus 207 aT~qsl~~~~--~~~~~~~~~iIvDEaH~-~~~~-~~~~il~---~~~~~~~~lGLTATp~~~~~~~~~~~~~fG~-i~~ 278 (501)
T PHA02558 207 STWQSAVKQP--KEWFDQFGMVIVDECHL-FTGK-SLTSIIT---KLDNCKFKFGLTGSLRDGKANILQYVGLFGD-IFK 278 (501)
T ss_pred eeHHHHhhch--hhhccccCEEEEEchhc-ccch-hHHHHHH---hhhccceEEEEeccCCCccccHHHHHHhhCC-ceE
Confidence 3788877643 23588999999999994 3322 2223333 234456789999999321 13335543 222
Q ss_pred EeC-------CcccceeEE--EEcCCc--------cchHH------------HHHHHHHHHHhhCCCCCEEEEcCCHHHH
Q psy1907 76 RIP-------GRRFPVDIY--YTKAPE--------ADYID------------ACVVSILQIHATQPLGDILVFLTGQEEI 126 (1320)
Q Consensus 76 ~i~-------g~~~pV~~~--y~~~~~--------~~~l~------------~~i~~v~~i~~~~~~g~iLVFl~t~~ei 126 (1320)
.+. |...++++. +...+. .+|-+ ..+..+..... ..++++|||+...+++
T Consensus 279 ~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~-~~~~~~lV~~~~~~h~ 357 (501)
T PHA02558 279 PVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLA-KKGENTFVMFKYVEHG 357 (501)
T ss_pred EecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHH-hcCCCEEEEEEEHHHH
Confidence 221 221222221 111110 11110 11111111112 2356799999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeC-cccccCCCCCCccEEEcCCCCccccc
Q psy1907 127 ETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLAT-NIAETSLTIDNIIYVIDPGFCKQNNF 205 (1320)
Q Consensus 127 e~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvAT-dIAe~gldIp~I~~VID~g~~k~~~y 205 (1320)
+.+++.|.+. +..+..+||++++++|..+++.|+.|...||||| +++++|+|+|+++.||....
T Consensus 358 ~~L~~~L~~~---------g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p------ 422 (501)
T PHA02558 358 KPLYEMLKKV---------YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHP------ 422 (501)
T ss_pred HHHHHHHHHc---------CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecC------
Confidence 9999999863 6689999999999999999999999999999998 99999999999999996543
Q ss_pred cCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecC
Q psy1907 206 NSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLG 248 (1320)
Q Consensus 206 d~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~ 248 (1320)
+-|+..+.||+||+||.++||.-...|-+.+
T Consensus 423 ------------~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD 453 (501)
T PHA02558 423 ------------SKSKIIVLQSIGRVLRKHGSKSIATVWDIID 453 (501)
T ss_pred ------------CcchhhhhhhhhccccCCCCCceEEEEEeec
Confidence 3467889999999999999874434443333
No 90
>PRK13766 Hef nuclease; Provisional
Probab=99.60 E-value=1.2e-14 Score=189.13 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=93.7
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCC--------CCHHHHHHHcCCCCCCCeEEEEeCccc
Q psy1907 111 QPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSN--------LPTDMQTKIFLPTPPNARKVVLATNIA 182 (1320)
Q Consensus 111 ~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~--------l~~~~r~~i~~~~~~g~~kVlvATdIA 182 (1320)
.+.+++|||++++..++.+.+.|.. .++.+..+||. |++.+|.++++.|+.|..+|||||+++
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~---------~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~ 433 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEK---------EGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVA 433 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHh---------CCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChh
Confidence 4567899999999999999999965 35666777775 999999999999999999999999999
Q ss_pred ccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCH
Q psy1907 183 ETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGE 249 (1320)
Q Consensus 183 e~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~ 249 (1320)
+.|+|+|++++||+++. |.+...++||+||+||.|+| .+|.|+++
T Consensus 434 ~eGldi~~~~~VI~yd~------------------~~s~~r~iQR~GR~gR~~~~----~v~~l~~~ 478 (773)
T PRK13766 434 EEGLDIPSVDLVIFYEP------------------VPSEIRSIQRKGRTGRQEEG----RVVVLIAK 478 (773)
T ss_pred hcCCCcccCCEEEEeCC------------------CCCHHHHHHHhcccCcCCCC----EEEEEEeC
Confidence 99999999999999775 44667899999999999998 56666654
No 91
>PRK09401 reverse gyrase; Reviewed
Probab=99.58 E-value=7.9e-15 Score=193.95 Aligned_cols=197 Identities=16% Similarity=0.124 Sum_probs=129.0
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcC-----------cchHHHHHHHHh-hcC--------------------
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLH-----------TDILFGLVKDIV-RFR-------------------- 48 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~-----------td~ll~llk~l~-~~r-------------------- 48 (1320)
.|||+|.+.+. .-.+.++++||||||| +.++ ++|....++.+. ..+
T Consensus 185 ~Tp~rL~~~~~-~l~~~~~~~lVvDEaD-~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~ 262 (1176)
T PRK09401 185 TTSQFLSKNFD-ELPKKKFDFVFVDDVD-AVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIA 262 (1176)
T ss_pred ECHHHHHHHHH-hccccccCEEEEEChH-HhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhh
Confidence 49999999875 2225679999999998 4443 344211111111 111
Q ss_pred ----CCCcEEEEecCcCHHHHH-hhcCCCCEEEeCCcc---cceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEc
Q psy1907 49 ----SDLKLLISSATLDAQKFS-EFFDDAPVFRIPGRR---FPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFL 120 (1320)
Q Consensus 49 ----~~~qlIl~SATl~~~~f~-~~f~~~~vi~i~g~~---~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl 120 (1320)
++.|+++||||+++.... .+|.+.-.+.+.... ..+...|...+ +..+.+. .+.... ++.+|||+
T Consensus 263 ~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi~~~--~k~~~L~----~ll~~l-~~~~LIFv 335 (1176)
T PRK09401 263 ELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVDSYIVDE--DSVEKLV----ELVKRL-GDGGLIFV 335 (1176)
T ss_pred hcccCCceEEEEeCCCCccchHHHHhhccceEEecCcccccCCceEEEEEcc--cHHHHHH----HHHHhc-CCCEEEEE
Confidence 267899999999753221 233222223333221 23555665543 3333322 222222 24699999
Q ss_pred CCHHH---HHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEe----CcccccCCCCCC-cc
Q psy1907 121 TGQEE---IETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLA----TNIAETSLTIDN-II 192 (1320)
Q Consensus 121 ~t~~e---ie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvA----TdIAe~gldIp~-I~ 192 (1320)
+++.. ++.++..|.. .++.+..+||+| .+.++.|++|+.+|||| ||+|+||||||+ |+
T Consensus 336 ~t~~~~~~ae~l~~~L~~---------~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~Ir 401 (1176)
T PRK09401 336 PSDKGKEYAEELAEYLED---------LGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIR 401 (1176)
T ss_pred ecccChHHHHHHHHHHHH---------CCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCccee
Confidence 99777 9999999986 379999999999 22358999999999999 799999999999 89
Q ss_pred EEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcC
Q psy1907 193 YVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVIT 232 (1320)
Q Consensus 193 ~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAG 232 (1320)
|||++|.|+.+.- --....+.||.||+=
T Consensus 402 yVI~y~vP~~~~~------------~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 402 YAIFYGVPKFKFS------------LEEELAPPFLLLRLL 429 (1176)
T ss_pred EEEEeCCCCEEEe------------ccccccCHHHHHHHH
Confidence 9999999874311 012245678888884
No 92
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.56 E-value=1.6e-14 Score=185.90 Aligned_cols=215 Identities=21% Similarity=0.218 Sum_probs=151.1
Q ss_pred CHHHHHHHHcCCC-----CCCCccEEEEeCCCc-cCcCcchHHHHHHHHhh----cCCCCcEEEEecCc-CHHHHHhhcC
Q psy1907 2 TDGTLHREFLSEP-----DLASYSVMIIDEAHE-RTLHTDILFGLVKDIVR----FRSDLKLLISSATL-DAQKFSEFFD 70 (1320)
Q Consensus 2 T~G~LLr~l~~d~-----~Ls~~s~iVLDEaHe-R~l~td~ll~llk~l~~----~r~~~qlIl~SATl-~~~~f~~~f~ 70 (1320)
||.||=.+++... .++++++||+||+|- |+...--+-.++|.+.+ ...++|+|.+|||+ ++..|..-+.
T Consensus 174 NpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~ 253 (851)
T COG1205 174 NPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELF 253 (851)
T ss_pred CHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhc
Confidence 5677666565432 279999999999995 44444445556666554 23479999999999 6655555333
Q ss_pred CCCEEE-eCCcccc--eeEEEEcCC---------ccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHH
Q psy1907 71 DAPVFR-IPGRRFP--VDIYYTKAP---------EADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVR 138 (1320)
Q Consensus 71 ~~~vi~-i~g~~~p--V~~~y~~~~---------~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~ 138 (1320)
+.++.. +.+...| -..+....| ..+.....-..+-....+ .-+.|||+.++..++.+.....+++.
T Consensus 254 ~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~--~~~tL~F~~sr~~~e~~~~~~~~~~~ 331 (851)
T COG1205 254 GRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRN--GIQTLVFFRSRKQVELLYLSPRRRLV 331 (851)
T ss_pred CCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHc--CceEEEEEehhhhhhhhhhchhHHHh
Confidence 444433 5443333 333333444 112222211111111111 34689999999999999876666655
Q ss_pred hhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceec
Q psy1907 139 RLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVP 218 (1320)
Q Consensus 139 ~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~p 218 (1320)
..+ ......+..+||+|+.++|.++...++.|..++++|||.+|.||||.+++.||.+|+ |
T Consensus 332 ~~~-~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~------------------P 392 (851)
T COG1205 332 REG-GKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGY------------------P 392 (851)
T ss_pred hcc-hhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCC------------------C
Confidence 444 233456888999999999999999999999999999999999999999999999988 5
Q ss_pred c-CHhhHHHHhhhcCCCCCC
Q psy1907 219 I-SKASANQRAGVITGFNPL 237 (1320)
Q Consensus 219 i-Sk~s~~QR~GRAGR~g~g 237 (1320)
. |..++.||+|||||.+.+
T Consensus 393 ~~s~~~~~Q~~GRaGR~~~~ 412 (851)
T COG1205 393 GVSVLSFRQRAGRAGRRGQE 412 (851)
T ss_pred CchHHHHHHhhhhccCCCCC
Confidence 5 789999999999999844
No 93
>PRK09694 helicase Cas3; Provisional
Probab=99.54 E-value=6.8e-14 Score=179.56 Aligned_cols=187 Identities=16% Similarity=0.186 Sum_probs=118.1
Q ss_pred ccEEEEeCCCccCcCcc-hHHHHHHHHhhcCCCCcEEEEecCcCHHH---HHhhcCCC---------CEEEeCC----cc
Q psy1907 19 YSVMIIDEAHERTLHTD-ILFGLVKDIVRFRSDLKLLISSATLDAQK---FSEFFDDA---------PVFRIPG----RR 81 (1320)
Q Consensus 19 ~s~iVLDEaHeR~l~td-~ll~llk~l~~~r~~~qlIl~SATl~~~~---f~~~f~~~---------~vi~i~g----~~ 81 (1320)
-++|||||+|--..+|. ++..+++.+.. ....+|+||||++... +.+-|++. |.+...+ ..
T Consensus 440 ~svvIiDEVHAyD~ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~ 517 (878)
T PRK09694 440 RSVLIVDEVHAYDAYMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQR 517 (878)
T ss_pred cCeEEEechhhCCHHHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccccccee
Confidence 46999999997655554 33445554433 3467999999997633 22222221 1221111 00
Q ss_pred c---------c----eeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeE
Q psy1907 82 F---------P----VDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELI 148 (1320)
Q Consensus 82 ~---------p----V~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~ 148 (1320)
+ + |.+.........-.+..+..+.... ..++.+|||+||.+.+..+++.|.+.. ..+..
T Consensus 518 ~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~------~~~~~ 589 (878)
T PRK09694 518 FDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELN------NTQVD 589 (878)
T ss_pred eeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhC------CCCce
Confidence 0 0 1111110000011122333333322 235789999999999999999998631 12467
Q ss_pred EEEecCCCCHHHHH----HHcCCC-CCCC---eEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccC
Q psy1907 149 ILPVYSNLPTDMQT----KIFLPT-PPNA---RKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPIS 220 (1320)
Q Consensus 149 v~~LH~~l~~~~r~----~i~~~~-~~g~---~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piS 220 (1320)
+..+||.+++.+|. ++++.| ++|+ .+|||||+|+|+|||| ++++||.... .
T Consensus 590 v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdla--------------------P 648 (878)
T PRK09694 590 IDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLC--------------------P 648 (878)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCC--------------------C
Confidence 99999999999994 566667 5565 4899999999999999 5788885322 3
Q ss_pred HhhHHHHhhhcCCCCC
Q psy1907 221 KASANQRAGVITGFNP 236 (1320)
Q Consensus 221 k~s~~QR~GRAGR~g~ 236 (1320)
.++++||+||+||.+.
T Consensus 649 idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 649 VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHhccCCCCC
Confidence 5799999999999865
No 94
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.54 E-value=6.2e-15 Score=140.48 Aligned_cols=90 Identities=57% Similarity=0.857 Sum_probs=79.7
Q ss_pred HHHHHHHHccccCCCCCccccccccccccCChhhHHHHHhhhhc-cchHHHHHHHhhcccCCccccCChhHHHHHHHHHh
Q psy1907 900 LALEQLYALGALNHHGDLTKLGRRMAEFPLDPMMGKMLLASEKY-KCVEEIVTIASMLSVNGAIFYRPKDKIIHADTARK 978 (1320)
Q Consensus 900 ~Ale~L~~LgAld~~g~LT~lG~~ma~lPldP~laK~Ll~s~~~-~c~~e~ltIaA~Lsv~~~~f~~p~~~~~~a~~~r~ 978 (1320)
+|++.|+.+||||.+|+||++|+.|+.||++|++||||+.|..+ +|.+++++|+|++++.+ +|..| .+.......+.
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~-~~~~~-~~~~~~~~~~~ 78 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGD-PFPRP-EKRAEADAARR 78 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCC-CcCCc-hHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999 89999999999999975 57666 45556667788
Q ss_pred hhccc-CCCHHHHH
Q psy1907 979 NFFML-GGDHLVLL 991 (1320)
Q Consensus 979 ~f~~~-~gDhltll 991 (1320)
.|... .|||++++
T Consensus 79 ~~~~~~~~D~~~~l 92 (92)
T smart00847 79 RFASGRESDHLTLL 92 (92)
T ss_pred HccCCCCCChhhhC
Confidence 88877 79999863
No 95
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.52 E-value=1.2e-13 Score=171.20 Aligned_cols=165 Identities=18% Similarity=0.104 Sum_probs=119.8
Q ss_pred cEEEEecCcCH--HHHHhhcCCCCEEEeCCccccee---EEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHH
Q psy1907 52 KLLISSATLDA--QKFSEFFDDAPVFRIPGRRFPVD---IYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEI 126 (1320)
Q Consensus 52 qlIl~SATl~~--~~f~~~f~~~~vi~i~g~~~pV~---~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~ei 126 (1320)
++..||||... +.|.+.|+- +++.||-...... ..+...+..++..+++..+...+.. +..+|||++|.+++
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l-~vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~--~~pvLIft~t~~~s 486 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGL-PVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQ--GRPVLVGTRSVAAS 486 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCC-CeEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhc--CCCEEEEeCcHHHH
Confidence 67889999943 457777743 3555664321111 1122233455666666655554432 35699999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCC---Ccc-----EEEcCC
Q psy1907 127 ETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTID---NII-----YVIDPG 198 (1320)
Q Consensus 127 e~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp---~I~-----~VID~g 198 (1320)
+.++..|.+ .++.+..|||++.+.++..+...+. ...|+||||+|.||+||+ +|. +||+++
T Consensus 487 e~L~~~L~~---------~gi~~~~Lhg~~~~rE~~ii~~ag~--~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d 555 (656)
T PRK12898 487 ERLSALLRE---------AGLPHQVLNAKQDAEEAAIVARAGQ--RGRITVATNMAGRGTDIKLEPGVAARGGLHVILTE 555 (656)
T ss_pred HHHHHHHHH---------CCCCEEEeeCCcHHHHHHHHHHcCC--CCcEEEEccchhcccCcCCccchhhcCCCEEEEcC
Confidence 999999987 3789999999977666555544444 446999999999999999 776 999998
Q ss_pred CCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHH
Q psy1907 199 FCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEV 251 (1320)
Q Consensus 199 ~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~ 251 (1320)
+ |.|...|.||+|||||.|.. |.|+.+++.++
T Consensus 556 ~------------------P~s~r~y~hr~GRTGRqG~~---G~s~~~is~eD 587 (656)
T PRK12898 556 R------------------HDSARIDRQLAGRCGRQGDP---GSYEAILSLED 587 (656)
T ss_pred C------------------CCCHHHHHHhcccccCCCCC---eEEEEEechhH
Confidence 7 66778899999999999975 68988888543
No 96
>PRK14701 reverse gyrase; Provisional
Probab=99.52 E-value=3.3e-14 Score=191.85 Aligned_cols=225 Identities=13% Similarity=0.054 Sum_probs=145.6
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcC-----------cchHHHHHH----HH---------------------
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLH-----------TDILFGLVK----DI--------------------- 44 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~-----------td~ll~llk----~l--------------------- 44 (1320)
.|||+|.+.+..-. ..++++|||||||. ++. +||...+.+ .+
T Consensus 184 ~TPgrL~~~~~~l~-~~~i~~iVVDEAD~-ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~ 261 (1638)
T PRK14701 184 TTAQFLARNFPEMK-HLKFDFIFVDDVDA-FLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKE 261 (1638)
T ss_pred ECCchhHHhHHHHh-hCCCCEEEEECcee-ccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhh
Confidence 38999988765322 27899999999983 332 466444432 11
Q ss_pred -hhcCCCCc-EEEEecCcCH-HHHHhhcCCCCEEEeCCccc---ceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEE
Q psy1907 45 -VRFRSDLK-LLISSATLDA-QKFSEFFDDAPVFRIPGRRF---PVDIYYTKAPEADYIDACVVSILQIHATQPLGDILV 118 (1320)
Q Consensus 45 -~~~r~~~q-lIl~SATl~~-~~f~~~f~~~~vi~i~g~~~---pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLV 118 (1320)
...++..+ ++++|||+++ .....+|.+.-.+.+..... .+...|......+. . .+..+.... +...||
T Consensus 262 ~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~----~L~~ll~~~-g~~gIV 335 (1638)
T PRK14701 262 IEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSGRSALRNIVDVYLNPEKIIK-E----HVRELLKKL-GKGGLI 335 (1638)
T ss_pred hhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCCCCCCCCcEEEEEECCHHHH-H----HHHHHHHhC-CCCeEE
Confidence 11234445 5779999975 23445565444455443322 34455554322222 2 222333333 346899
Q ss_pred EcCCHHHH---HHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeC----cccccCCCCCC-
Q psy1907 119 FLTGQEEI---ETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLAT----NIAETSLTIDN- 190 (1320)
Q Consensus 119 Fl~t~~ei---e~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvAT----dIAe~gldIp~- 190 (1320)
||+|++.+ +.+++.|.+ .++.+.++||+ |.++++.|++|...||||| |+|+||||+|+
T Consensus 336 F~~t~~~~e~ae~la~~L~~---------~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~ 401 (1638)
T PRK14701 336 FVPIDEGAEKAEEIEKYLLE---------DGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPER 401 (1638)
T ss_pred EEeccccchHHHHHHHHHHH---------CCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCc
Confidence 99998865 788888876 48999999996 8889999999999999999 69999999999
Q ss_pred ccEEEcCCCCcccc----ccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHHHhhcc
Q psy1907 191 IIYVIDPGFCKQNN----FNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEVLRGCA 256 (1320)
Q Consensus 191 I~~VID~g~~k~~~----yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~~~l~ 256 (1320)
|+|||++|+|+... |.+.... +. . ..-..++.|||||.|.- ..|+..+..++...+.
T Consensus 402 Vryvi~~~~Pk~~~~~e~~~~~~~~--~~---~-~~~~~~~~~~a~~~g~~---~~~~~~~~~~~~~~~~ 462 (1638)
T PRK14701 402 IRFAVFYGVPKFRFRVDLEDPTIYR--IL---G-LLSEILKIEEELKEGIP---IEGVLDVFPEDVEFLR 462 (1638)
T ss_pred cCEEEEeCCCCCCcchhhcccchhh--hh---c-chHHHHHhhhhcccCCc---chhHHHhHHHHHHHHH
Confidence 99999999988441 3222211 00 0 23456778999998852 2565555566555443
No 97
>PRK02362 ski2-like helicase; Provisional
Probab=99.52 E-value=1.1e-12 Score=169.60 Aligned_cols=118 Identities=23% Similarity=0.200 Sum_probs=82.6
Q ss_pred hhhHHHHHHH-HHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEE
Q psy1907 672 YPFKQDLIDA-VRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYA 750 (1320)
Q Consensus 672 ~~~~~~il~~-i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~ 750 (1320)
++...+.+.+ +.++..++|++|||||||...-..++..-. .++++++.-|.|--|.....++.. ++ ++|-.||-.
T Consensus 25 ~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~--~~~kal~i~P~raLa~q~~~~~~~-~~-~~g~~v~~~ 100 (737)
T PRK02362 25 YPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA--RGGKALYIVPLRALASEKFEEFER-FE-ELGVRVGIS 100 (737)
T ss_pred CHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHHHH-hh-cCCCEEEEE
Confidence 3445555555 788999999999999999886555444321 244688899999999888888763 42 235555433
Q ss_pred eecCcc---CCCCccEEEEccHHHHHHHhcC-CCCCCccEEEEcccc
Q psy1907 751 IRFEDC---TSERTIIKYMTDGTLHREFLSE-PDLASYSVMIIDEAH 793 (1320)
Q Consensus 751 irfe~~---~s~~T~i~y~TdG~Llrel~~d-p~L~~ys~iIiDE~H 793 (1320)
...-+. .-.+..|+++|.+.+..-+.+. .++.++++|||||+|
T Consensus 101 tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H 147 (737)
T PRK02362 101 TGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVH 147 (737)
T ss_pred eCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcc
Confidence 221111 1135679999999887666554 478999999999999
No 98
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.48 E-value=3.8e-13 Score=169.98 Aligned_cols=161 Identities=19% Similarity=0.152 Sum_probs=124.3
Q ss_pred cEEEEecCcC--HHHHHhhcCCCCEEEeCCccccee------EEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCH
Q psy1907 52 KLLISSATLD--AQKFSEFFDDAPVFRIPGRRFPVD------IYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQ 123 (1320)
Q Consensus 52 qlIl~SATl~--~~~f~~~f~~~~vi~i~g~~~pV~------~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~ 123 (1320)
++..||.|.. .+.|.+.+ +-+++.||.. .|+. ..|. ...++..+++..+...+.. +..+|||++|.
T Consensus 365 kl~GmTGTa~t~~~e~~~~Y-~l~v~~IPt~-kp~~r~d~~~~i~~--~~~~K~~al~~~i~~~~~~--~~pvLIf~~t~ 438 (790)
T PRK09200 365 KLSGMTGTAKTEEKEFFEVY-NMEVVQIPTN-RPIIRIDYPDKVFV--TLDEKYKAVIEEVKERHET--GRPVLIGTGSI 438 (790)
T ss_pred HHhccCCCChHHHHHHHHHh-CCcEEECCCC-CCcccccCCCeEEc--CHHHHHHHHHHHHHHHHhc--CCCEEEEeCcH
Confidence 5778888883 24466655 5678888753 2321 1222 2345566666665555433 56799999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCC---CCcc-----EEE
Q psy1907 124 EEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTI---DNII-----YVI 195 (1320)
Q Consensus 124 ~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldI---p~I~-----~VI 195 (1320)
+.++.++..|.+ .++.+..|||.+.+.++..+...+.+| +|+||||+|+||+|| |+|. +||
T Consensus 439 ~~se~l~~~L~~---------~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI 507 (790)
T PRK09200 439 EQSETFSKLLDE---------AGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVI 507 (790)
T ss_pred HHHHHHHHHHHH---------CCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEE
Confidence 999999999987 378899999999999988888777766 799999999999999 7998 999
Q ss_pred cCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHH
Q psy1907 196 DPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 196 D~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~ 250 (1320)
++++ |.|...|.||.|||||.|.. |.|+.+.+.+
T Consensus 508 ~~d~------------------p~s~r~y~qr~GRtGR~G~~---G~s~~~is~e 541 (790)
T PRK09200 508 GTER------------------MESRRVDLQLRGRSGRQGDP---GSSQFFISLE 541 (790)
T ss_pred eccC------------------CCCHHHHHHhhccccCCCCC---eeEEEEEcch
Confidence 9987 66778899999999999975 5888888754
No 99
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.48 E-value=1.8e-13 Score=181.47 Aligned_cols=179 Identities=16% Similarity=0.211 Sum_probs=119.1
Q ss_pred CHHHHHHHHcCCCCCCCccEEEEeCCCccCcC-----------cchHHHHHHH-----------------------Hhhc
Q psy1907 2 TDGTLHREFLSEPDLASYSVMIIDEAHERTLH-----------TDILFGLVKD-----------------------IVRF 47 (1320)
Q Consensus 2 T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~-----------td~ll~llk~-----------------------l~~~ 47 (1320)
|||+|.+.+..-. .++++||||||| +.++ ++|....+.. +...
T Consensus 185 Tp~rL~~~~~~l~--~~~~~iVvDEaD-~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (1171)
T TIGR01054 185 TTMFLSKNYDELG--PKFDFIFVDDVD-ALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAI 261 (1171)
T ss_pred CHHHHHHHHHHhc--CCCCEEEEeChH-hhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhh
Confidence 9999998765411 289999999997 4554 3443221111 1112
Q ss_pred CCCCc--EEEEecCcCHHHHH-hhcCCCCEEEeCCcc---cceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcC
Q psy1907 48 RSDLK--LLISSATLDAQKFS-EFFDDAPVFRIPGRR---FPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLT 121 (1320)
Q Consensus 48 r~~~q--lIl~SATl~~~~f~-~~f~~~~vi~i~g~~---~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~ 121 (1320)
+++.| ++++|||..+.... .+|.+.-.+.+.... ..+...|..... ..+. +..+.... ++.+|||++
T Consensus 262 ~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~----L~~ll~~l-~~~~IVFv~ 334 (1171)
T TIGR01054 262 PGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNVVDVYVEDED--LKET----LLEIVKKL-GTGGIVYVS 334 (1171)
T ss_pred hhccCcEEEEEeCCCCccccHHHHcccccceEecCccccccceEEEEEeccc--HHHH----HHHHHHHc-CCCEEEEEe
Confidence 34444 67799995332222 344333234443322 234555654322 1222 22222222 346899999
Q ss_pred CH---HHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEe----CcccccCCCCCC-ccE
Q psy1907 122 GQ---EEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLA----TNIAETSLTIDN-IIY 193 (1320)
Q Consensus 122 t~---~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvA----TdIAe~gldIp~-I~~ 193 (1320)
++ +.++.++..|.+ .++.+..+||++++ .+++.|++|+.+|||| ||+|+||||||+ |+|
T Consensus 335 t~~~~~~a~~l~~~L~~---------~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~ 401 (1171)
T TIGR01054 335 IDYGKEKAEEIAEFLEN---------HGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRY 401 (1171)
T ss_pred ccccHHHHHHHHHHHHh---------CCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccE
Confidence 99 999999999986 37899999999974 5789999999999999 599999999999 899
Q ss_pred EEcCCCCccc
Q psy1907 194 VIDPGFCKQN 203 (1320)
Q Consensus 194 VID~g~~k~~ 203 (1320)
||++|+|+.+
T Consensus 402 vI~~~~P~~~ 411 (1171)
T TIGR01054 402 AVFLGVPKFK 411 (1171)
T ss_pred EEEECCCCEE
Confidence 9999998754
No 100
>KOG0354|consensus
Probab=99.45 E-value=8.3e-13 Score=162.54 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=93.8
Q ss_pred HHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEec----CCCCHHHHHHHcCCCCCCCeEE
Q psy1907 100 CVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVY----SNLPTDMQTKIFLPTPPNARKV 175 (1320)
Q Consensus 100 ~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH----~~l~~~~r~~i~~~~~~g~~kV 175 (1320)
....+.......+...+|||+.+++.++.+..+|.+.. .++- .+..-+.--+ .+|++.+|..+++.|+.|..+|
T Consensus 400 l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~-~~~i-r~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~Nv 477 (746)
T KOG0354|consen 400 LVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLH-ELGI-KAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINV 477 (746)
T ss_pred HHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhh-hccc-ccceeeeccccccccccCHHHHHHHHHHHhCCCccE
Confidence 33334443344445689999999999999999998521 1100 0111111111 4899999999999999999999
Q ss_pred EEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCH
Q psy1907 176 VLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGE 249 (1320)
Q Consensus 176 lvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~ 249 (1320)
||||.|||=||||+.++.||=||+. .+.-..+||.|| ||...| .|+.|++.
T Consensus 478 LVATSV~EEGLDI~ec~lVIcYd~~------------------snpIrmIQrrGR-gRa~ns----~~vll~t~ 528 (746)
T KOG0354|consen 478 LVATSVAEEGLDIGECNLVICYDYS------------------SNPIRMVQRRGR-GRARNS----KCVLLTTG 528 (746)
T ss_pred EEEecchhccCCcccccEEEEecCC------------------ccHHHHHHHhcc-ccccCC----eEEEEEcc
Confidence 9999999999999999999977662 234568999999 999998 68888884
No 101
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.44 E-value=1.9e-12 Score=162.39 Aligned_cols=162 Identities=17% Similarity=0.115 Sum_probs=121.7
Q ss_pred CcEEEEecCcC--HHHHHhhcCCCCEEEeCCccccee-----EEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCH
Q psy1907 51 LKLLISSATLD--AQKFSEFFDDAPVFRIPGRRFPVD-----IYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQ 123 (1320)
Q Consensus 51 ~qlIl~SATl~--~~~f~~~f~~~~vi~i~g~~~pV~-----~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~ 123 (1320)
.++..|+.|.. .+.|.+.+ +-+++.||....-.. ..|.. ..++..+.+..+...+.. +..+|||++|.
T Consensus 360 ~kl~GmTGTa~~~~~Ef~~iY-~l~v~~IPt~kp~~r~d~~d~i~~~--~~~K~~ai~~~i~~~~~~--~~pvLIft~s~ 434 (762)
T TIGR03714 360 NKLSGMTGTGKVAEKEFIETY-SLSVVKIPTNKPIIRIDYPDKIYAT--LPEKLMATLEDVKEYHET--GQPVLLITGSV 434 (762)
T ss_pred chhcccCCCChhHHHHHHHHh-CCCEEEcCCCCCeeeeeCCCeEEEC--HHHHHHHHHHHHHHHhhC--CCCEEEEECcH
Confidence 36778888873 35566665 566788876422111 12222 345566666666665543 46799999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCC---------CccEE
Q psy1907 124 EEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTID---------NIIYV 194 (1320)
Q Consensus 124 ~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp---------~I~~V 194 (1320)
+.++.++..|.+ .++.+..|||.+.+.++..+...+.+| +|+||||+|+||+||+ |+.+|
T Consensus 435 ~~se~ls~~L~~---------~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vI 503 (762)
T TIGR03714 435 EMSEIYSELLLR---------EGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVI 503 (762)
T ss_pred HHHHHHHHHHHH---------CCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEE
Confidence 999999999987 378889999999999998888888777 6999999999999999 99999
Q ss_pred EcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHH
Q psy1907 195 IDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 195 ID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~ 250 (1320)
|++..+ ..... .||.|||||.|.. |.++.+.+.+
T Consensus 504 it~~~p------------------s~rid-~qr~GRtGRqG~~---G~s~~~is~e 537 (762)
T TIGR03714 504 GTERME------------------NSRVD-LQLRGRSGRQGDP---GSSQFFVSLE 537 (762)
T ss_pred EecCCC------------------CcHHH-HHhhhcccCCCCc---eeEEEEEccc
Confidence 987652 22334 8999999999975 5788877754
No 102
>KOG0947|consensus
Probab=99.42 E-value=6.7e-13 Score=162.53 Aligned_cols=233 Identities=18% Similarity=0.201 Sum_probs=158.6
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHH--HHhhcCCCCcEEEEecCc-CHHHHHhhcCCC---C
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVK--DIVRFRSDLKLLISSATL-DAQKFSEFFDDA---P 73 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk--~l~~~r~~~qlIl~SATl-~~~~f~~~f~~~---~ 73 (1320)
||..+|-.++.++.. ++++..||+||+| .-.|.-.|... .++-+++..++|++|||+ |...|++|.|.. .
T Consensus 385 MTTEILRsMLYrgadliRDvE~VIFDEVH---YiND~eRGvVWEEViIMlP~HV~~IlLSATVPN~~EFA~WIGRtK~K~ 461 (1248)
T KOG0947|consen 385 MTTEILRSMLYRGADLIRDVEFVIFDEVH---YINDVERGVVWEEVIIMLPRHVNFILLSATVPNTLEFADWIGRTKQKT 461 (1248)
T ss_pred ehHHHHHHHHhcccchhhccceEEEeeee---ecccccccccceeeeeeccccceEEEEeccCCChHHHHHHhhhccCce
Confidence 899998888887776 8999999999999 22233333332 345578889999999999 889999999742 2
Q ss_pred EEEeC--CcccceeEEE-EcCC----------------------------------------------------------
Q psy1907 74 VFRIP--GRRFPVDIYY-TKAP---------------------------------------------------------- 92 (1320)
Q Consensus 74 vi~i~--g~~~pV~~~y-~~~~---------------------------------------------------------- 92 (1320)
+..+. .|+.|.+.+. .+..
T Consensus 462 IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r 541 (1248)
T KOG0947|consen 462 IYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSR 541 (1248)
T ss_pred EEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcc
Confidence 33333 4555555432 1100
Q ss_pred ----ccchH--HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHH------------------HhhcC---CCC
Q psy1907 93 ----EADYI--DACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRV------------------RRLGS---KIK 145 (1320)
Q Consensus 93 ----~~~~l--~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~------------------~~l~~---~~~ 145 (1320)
..+.- ...+.++.++.... --.++||+=++..||..+++|...- ..+.+ ++|
T Consensus 542 ~~~~~~nrr~~~~~l~lin~L~k~~-lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LP 620 (1248)
T KOG0947|consen 542 GSGIGKNRRKQPTWLDLINHLRKKN-LLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLP 620 (1248)
T ss_pred cccccccccccchHHHHHHHHhhcc-cCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccch
Confidence 00000 01233333333222 2458999999999999999997411 01111 111
Q ss_pred C---------eEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccce
Q psy1907 146 E---------LIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTV 216 (1320)
Q Consensus 146 ~---------~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~ 216 (1320)
. -.+..+|||+-+-...-|..-|..|-+|||+||..-+.|++.|.-++|+++=. | .|.. ..
T Consensus 621 Qvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~-K---hDG~------ef 690 (1248)
T KOG0947|consen 621 QVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLR-K---HDGN------EF 690 (1248)
T ss_pred HHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehh-h---ccCc------ce
Confidence 1 13677999999999888888999999999999999999999999998887532 1 2222 23
Q ss_pred eccCHhhHHHHhhhcCCCCCCCCceEEEEecC
Q psy1907 217 VPISKASANQRAGVITGFNPLSDFRGCAHVLG 248 (1320)
Q Consensus 217 ~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~ 248 (1320)
.-+...+|.|++|||||.|-+. =|+++.+.+
T Consensus 691 R~L~PGEytQMAGRAGRRGlD~-tGTVii~~~ 721 (1248)
T KOG0947|consen 691 RELLPGEYTQMAGRAGRRGLDE-TGTVIIMCK 721 (1248)
T ss_pred eecCChhHHhhhccccccccCc-CceEEEEec
Confidence 4577899999999999999752 256665544
No 103
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.40 E-value=2.5e-12 Score=161.31 Aligned_cols=196 Identities=16% Similarity=0.209 Sum_probs=124.6
Q ss_pred CCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcC--HHHHHh--hcCCCCEEEe-------CCccccee
Q psy1907 17 ASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLD--AQKFSE--FFDDAPVFRI-------PGRRFPVD 85 (1320)
Q Consensus 17 s~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~--~~~f~~--~f~~~~vi~i-------~g~~~pV~ 85 (1320)
..+++||+||||. ... . ..+.+...-+....+.+|||+. ...... ++-++.++.. .|-..|++
T Consensus 374 ~~~gLII~DEvH~-lpA-~----~fr~il~~l~a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~ 447 (732)
T TIGR00603 374 REWGLILLDEVHV-VPA-A----MFRRVLTIVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQ 447 (732)
T ss_pred ccCCEEEEEcccc-ccH-H----HHHHHHHhcCcCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccce
Confidence 4688999999993 222 1 2222222212334699999992 222222 2234555444 24444443
Q ss_pred EE--EEcCCcc---chHH-----------------HHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCC
Q psy1907 86 IY--YTKAPEA---DYID-----------------ACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSK 143 (1320)
Q Consensus 86 ~~--y~~~~~~---~~l~-----------------~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~ 143 (1320)
.. +++.+.. .|+. .++..++..|. ..+.++|||+...+.++.++..|.
T Consensus 448 ~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L~--------- 517 (732)
T TIGR00603 448 CAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKLG--------- 517 (732)
T ss_pred EEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHcC---------
Confidence 32 2222211 1111 01111223232 245689999999888877766552
Q ss_pred CCCeEEEEecCCCCHHHHHHHcCCCCCC-CeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHh
Q psy1907 144 IKELIILPVYSNLPTDMQTKIFLPTPPN-ARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKA 222 (1320)
Q Consensus 144 ~~~~~v~~LH~~l~~~~r~~i~~~~~~g-~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~ 222 (1320)
+..+||++++.+|.++++.|+.| ..++||+|+++.+|||+|++++||+... . +-|..
T Consensus 518 -----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~--------~---------~gS~~ 575 (732)
T TIGR00603 518 -----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISS--------H---------YGSRR 575 (732)
T ss_pred -----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCC--------C---------CCCHH
Confidence 23489999999999999999865 7899999999999999999999997543 1 23789
Q ss_pred hHHHHhhhcCCCCCCCC---c-eEEEEecCHH
Q psy1907 223 SANQRAGVITGFNPLSD---F-RGCAHVLGEE 250 (1320)
Q Consensus 223 s~~QR~GRAGR~g~g~~---f-g~~~~L~~~~ 250 (1320)
++.||.||++|.++|+. | -..|.|.+++
T Consensus 576 q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 576 QEAQRLGRILRAKKGSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred HHHHHhcccccCCCCCccccccceEEEEecCC
Confidence 99999999999988731 1 1237777754
No 104
>KOG0948|consensus
Probab=99.39 E-value=4.9e-13 Score=160.16 Aligned_cols=237 Identities=19% Similarity=0.174 Sum_probs=161.9
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCc-CHHHHHhhcC-----CCC
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL-DAQKFSEFFD-----DAP 73 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl-~~~~f~~~f~-----~~~ 73 (1320)
||..+|-.++..... +..+..||+||+|= +-|.+-.--+..-|.-++++.|.|.+|||+ |+-.|++|.. .|.
T Consensus 217 MTTEILRsMLYRGSEvmrEVaWVIFDEIHY-MRDkERGVVWEETIIllP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcH 295 (1041)
T KOG0948|consen 217 MTTEILRSMLYRGSEVMREVAWVIFDEIHY-MRDKERGVVWEETIILLPDNVRFVFLSATIPNARQFAEWICHIHKQPCH 295 (1041)
T ss_pred eHHHHHHHHHhccchHhheeeeEEeeeehh-ccccccceeeeeeEEeccccceEEEEeccCCCHHHHHHHHHHHhcCCce
Confidence 899988888777665 89999999999991 111111111222244468889999999999 8888999883 244
Q ss_pred EEEeCCcccceeEE-EE--------cCC-c----cchHHH-----------------------------------HHHHH
Q psy1907 74 VFRIPGRRFPVDIY-YT--------KAP-E----ADYIDA-----------------------------------CVVSI 104 (1320)
Q Consensus 74 vi~i~g~~~pV~~~-y~--------~~~-~----~~~l~~-----------------------------------~i~~v 104 (1320)
++-.+-|+.|.+.+ |. ... . .+.+.. ....|
T Consensus 296 VVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiV 375 (1041)
T KOG0948|consen 296 VVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIV 375 (1041)
T ss_pred EEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHH
Confidence 55555666666554 21 100 0 011111 11222
Q ss_pred HHHHhhCCCCCEEEEcCCHHHHHHHHHHHHH------------------HHHhhcCCCCCe------------EEEEecC
Q psy1907 105 LQIHATQPLGDILVFLTGQEEIETCNEILQD------------------RVRRLGSKIKEL------------IILPVYS 154 (1320)
Q Consensus 105 ~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~------------------~~~~l~~~~~~~------------~v~~LH~ 154 (1320)
-.+... ....+|||.=++.+||.++-.+.+ .+..++.+..++ .|..+||
T Consensus 376 kmi~~~-~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHs 454 (1041)
T KOG0948|consen 376 KMIMER-NYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHS 454 (1041)
T ss_pred HHHHhh-cCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccc
Confidence 222222 235699999999999998877753 112223222222 2666899
Q ss_pred CCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCC
Q psy1907 155 NLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGF 234 (1320)
Q Consensus 155 ~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~ 234 (1320)
||-+--.+-|.--|.+|-.||++||..-+-||+.|.-++|. +..+.||... ..|+|-.+|+|++|||||.
T Consensus 455 GLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF----T~~rKfDG~~------fRwissGEYIQMSGRAGRR 524 (1041)
T KOG0948|consen 455 GLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF----TAVRKFDGKK------FRWISSGEYIQMSGRAGRR 524 (1041)
T ss_pred cchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE----eeccccCCcc------eeeecccceEEeccccccc
Confidence 99999888887789999999999999999999999987665 4455566553 4799999999999999999
Q ss_pred CCCCCceEEEEecCHH
Q psy1907 235 NPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 235 g~g~~fg~~~~L~~~~ 250 (1320)
|.+ .=|+|+.+.++.
T Consensus 525 G~D-drGivIlmiDek 539 (1041)
T KOG0948|consen 525 GID-DRGIVILMIDEK 539 (1041)
T ss_pred CCC-CCceEEEEecCc
Confidence 974 236999988865
No 105
>KOG0950|consensus
Probab=99.39 E-value=1.4e-12 Score=161.23 Aligned_cols=227 Identities=16% Similarity=0.209 Sum_probs=149.8
Q ss_pred HHHHHHcCCCCCCCccEEEEeCCC-----ccCcCcchHHHHHHHHhh-cCCCCcEEEEecCc-CHHHHHhhcCCCCEEEe
Q psy1907 5 TLHREFLSEPDLASYSVMIIDEAH-----ERTLHTDILFGLVKDIVR-FRSDLKLLISSATL-DAQKFSEFFDDAPVFRI 77 (1320)
Q Consensus 5 ~LLr~l~~d~~Ls~~s~iVLDEaH-----eR~l~td~ll~llk~l~~-~r~~~qlIl~SATl-~~~~f~~~f~~~~vi~i 77 (1320)
.|.+.+.....++.+..||+||.| +|+.+...+ +-|.+.. ....+|+|.||||+ |...++.||+ +.+..-
T Consensus 328 slin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~--l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~-A~~y~t 404 (1008)
T KOG0950|consen 328 SLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELL--LAKILYENLETSVQIIGMSATIPNNSLLQDWLD-AFVYTT 404 (1008)
T ss_pred hHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHH--HHHHHHhccccceeEeeeecccCChHHHHHHhh-hhheec
Confidence 356666667778999999999999 344333322 2333332 33447899999999 8888999885 333332
Q ss_pred CCcccceeEEEEcCCccchHHH-HHHHHHH--------------------HHhhCCCC-CEEEEcCCHHHHHHHHHHHHH
Q psy1907 78 PGRRFPVDIYYTKAPEADYIDA-CVVSILQ--------------------IHATQPLG-DILVFLTGQEEIETCNEILQD 135 (1320)
Q Consensus 78 ~g~~~pV~~~y~~~~~~~~l~~-~i~~v~~--------------------i~~~~~~g-~iLVFl~t~~eie~l~~~L~~ 135 (1320)
.-++.|...+. + +.....+. ....+.. ....-+.| .+|||+|++..+|.++..+..
T Consensus 405 ~fRPv~L~E~i-k-~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~ 482 (1008)
T KOG0950|consen 405 RFRPVPLKEYI-K-PGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAK 482 (1008)
T ss_pred ccCcccchhcc-C-CCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHH
Confidence 22322222211 1 11000000 0111111 11122234 499999999999999987765
Q ss_pred HHHhhc----------------------CC-------CCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCC
Q psy1907 136 RVRRLG----------------------SK-------IKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSL 186 (1320)
Q Consensus 136 ~~~~l~----------------------~~-------~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gl 186 (1320)
..+... .. .-...+..+|+|++.++|..+...|++|...|++||+.++.|+
T Consensus 483 ~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGV 562 (1008)
T KOG0950|consen 483 KVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGV 562 (1008)
T ss_pred HhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccC
Confidence 332110 00 1123466789999999999999999999999999999999999
Q ss_pred CCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHH
Q psy1907 187 TIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEV 251 (1320)
Q Consensus 187 dIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~ 251 (1320)
+.|..+++|-.-+ ......+..+|.|+.|||||+|-+ .-|.++..+.+.+
T Consensus 563 NLPArRVIiraP~--------------~g~~~l~~~~YkQM~GRAGR~gid-T~GdsiLI~k~~e 612 (1008)
T KOG0950|consen 563 NLPARRVIIRAPY--------------VGREFLTRLEYKQMVGRAGRTGID-TLGDSILIIKSSE 612 (1008)
T ss_pred cCCcceeEEeCCc--------------cccchhhhhhHHhhhhhhhhcccc-cCcceEEEeeccc
Confidence 9999999985432 234577889999999999999986 4577887777554
No 106
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.38 E-value=2.3e-12 Score=162.40 Aligned_cols=126 Identities=15% Similarity=0.032 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEE
Q psy1907 96 YIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKV 175 (1320)
Q Consensus 96 ~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kV 175 (1320)
.++.++..+.... ..+..+|||++|+..++.+++.|.+. ++.+..+||++++.+|.+++..|+.|...|
T Consensus 427 qi~~Ll~eI~~~~--~~g~~vLIf~~tk~~ae~L~~~L~~~---------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~V 495 (655)
T TIGR00631 427 QVDDLLSEIRQRV--ARNERVLVTTLTKKMAEDLTDYLKEL---------GIKVRYLHSEIDTLERVEIIRDLRLGEFDV 495 (655)
T ss_pred hHHHHHHHHHHHH--cCCCEEEEEECCHHHHHHHHHHHhhh---------ccceeeeeCCCCHHHHHHHHHHHhcCCceE
Confidence 3444444443322 23567999999999999999999873 678999999999999999999999999999
Q ss_pred EEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCH
Q psy1907 176 VLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGE 249 (1320)
Q Consensus 176 lvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~ 249 (1320)
+|||+++++|+|+|++++||.++-.. ...|-+..+|+||+|||||...| .|+.+.+.
T Consensus 496 LV~t~~L~rGfDiP~v~lVvi~Dadi-------------fG~p~~~~~~iqriGRagR~~~G----~vi~~~~~ 552 (655)
T TIGR00631 496 LVGINLLREGLDLPEVSLVAILDADK-------------EGFLRSERSLIQTIGRAARNVNG----KVIMYADK 552 (655)
T ss_pred EEEcChhcCCeeeCCCcEEEEeCccc-------------ccCCCCHHHHHHHhcCCCCCCCC----EEEEEEcC
Confidence 99999999999999999999866311 11366788999999999999776 67766663
No 107
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.36 E-value=1.2e-11 Score=138.25 Aligned_cols=191 Identities=15% Similarity=0.184 Sum_probs=130.5
Q ss_pred CCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhcC-CCCEEEeCCc----ccceeEEEEcC
Q psy1907 17 ASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFFD-DAPVFRIPGR----RFPVDIYYTKA 91 (1320)
Q Consensus 17 s~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~-~~~vi~i~g~----~~pV~~~y~~~ 91 (1320)
..++++||||+|--....|..+...-.-. ..+.--+|++|||..-+.-.+... +-..+.++.| +.||.-+.-..
T Consensus 201 ~aFD~liIDEVDAFP~~~d~~L~~Av~~a-rk~~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~ 279 (441)
T COG4098 201 QAFDLLIIDEVDAFPFSDDQSLQYAVKKA-RKKEGATIYLTATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIG 279 (441)
T ss_pred hhccEEEEeccccccccCCHHHHHHHHHh-hcccCceEEEecCChHHHHHHhhhCCeeEeecchhhcCCCCCCCceEEec
Confidence 47899999999988777776655432212 233455899999976544444332 2334566643 34555443333
Q ss_pred CccchH-----HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcC
Q psy1907 92 PEADYI-----DACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFL 166 (1320)
Q Consensus 92 ~~~~~l-----~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~ 166 (1320)
+...++ ...+...+.-+... ...+|||+|+.+-.+.+++.|.+.+ +...+...|+. ...|....+
T Consensus 280 ~~~k~l~r~kl~~kl~~~lekq~~~-~~P~liF~p~I~~~eq~a~~lk~~~-------~~~~i~~Vhs~--d~~R~EkV~ 349 (441)
T COG4098 280 NWNKKLQRNKLPLKLKRWLEKQRKT-GRPVLIFFPEIETMEQVAAALKKKL-------PKETIASVHSE--DQHRKEKVE 349 (441)
T ss_pred cHHHHhhhccCCHHHHHHHHHHHhc-CCcEEEEecchHHHHHHHHHHHhhC-------Cccceeeeecc--CccHHHHHH
Confidence 333333 33344444333332 3569999999999999999997643 56677888876 555777788
Q ss_pred CCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCC
Q psy1907 167 PTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGF 234 (1320)
Q Consensus 167 ~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~ 234 (1320)
.|++|..++|++|.|+|||+|+|+|+++|-..- |+ --|.+..+|-+||+||.
T Consensus 350 ~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgae-------h~---------vfTesaLVQIaGRvGRs 401 (441)
T COG4098 350 AFRDGKITLLITTTILERGVTFPNVDVFVLGAE-------HR---------VFTESALVQIAGRVGRS 401 (441)
T ss_pred HHHcCceEEEEEeehhhcccccccceEEEecCC-------cc---------cccHHHHHHHhhhccCC
Confidence 999999999999999999999999998772110 11 23789999999999995
No 108
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.35 E-value=5.4e-12 Score=155.45 Aligned_cols=206 Identities=14% Similarity=0.164 Sum_probs=129.6
Q ss_pred CCCccEEEEeCCCccCcCcchHH-----HHHHHHhhcCCCCcEEEEecCcCHHHHHhhcCCC-CEEEeC----Cccccee
Q psy1907 16 LASYSVMIIDEAHERTLHTDILF-----GLVKDIVRFRSDLKLLISSATLDAQKFSEFFDDA-PVFRIP----GRRFPVD 85 (1320)
Q Consensus 16 Ls~~s~iVLDEaHeR~l~td~ll-----~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~~~-~vi~i~----g~~~pV~ 85 (1320)
++++++|||||+|+-+...+-.. .+ ........+.++|++|||...+.+.....+. ..+.++ +...| .
T Consensus 91 ~~~l~lIIVDEeh~~sykq~~~p~y~ar~~-a~~ra~~~~~~vil~SATPsles~~~~~~g~~~~~~l~~r~~~~~~p-~ 168 (505)
T TIGR00595 91 FKNLGLIIVDEEHDSSYKQEEGPRYHARDV-AVYRAKKFNCPVVLGSATPSLESYHNAKQKAYRLLVLTRRVSGRKPP-E 168 (505)
T ss_pred ccCCCEEEEECCCccccccccCCCCcHHHH-HHHHHHhcCCCEEEEeCCCCHHHHHHHhcCCeEEeechhhhcCCCCC-e
Confidence 78999999999997554332111 11 1112234578899999999888776654332 223332 22222 2
Q ss_pred EEEEcCCc---cchH-HHHHHHHHHHHhhCCCCCEEEEcCCHHH------------------------------------
Q psy1907 86 IYYTKAPE---ADYI-DACVVSILQIHATQPLGDILVFLTGQEE------------------------------------ 125 (1320)
Q Consensus 86 ~~y~~~~~---~~~l-~~~i~~v~~i~~~~~~g~iLVFl~t~~e------------------------------------ 125 (1320)
+....... ...+ +.++..+.+.... ++.+|||+|++.-
T Consensus 169 v~vid~~~~~~~~~ls~~l~~~i~~~l~~--g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~C 246 (505)
T TIGR00595 169 VKLIDMRKEPRQSFLSPELITAIEQTLAA--GEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYC 246 (505)
T ss_pred EEEEecccccccCCccHHHHHHHHHHHHc--CCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCC
Confidence 22222111 1111 2333333333322 4579999876532
Q ss_pred ------------------------HHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHH--HHHcCCCCCCCeEEEEeC
Q psy1907 126 ------------------------IETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQ--TKIFLPTPPNARKVVLAT 179 (1320)
Q Consensus 126 ------------------------ie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r--~~i~~~~~~g~~kVlvAT 179 (1320)
++.+.+.|.+.+ ++..+..+|+++++..+ .++++.|++|+..|||+|
T Consensus 247 g~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~f-------p~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT 319 (505)
T TIGR00595 247 GYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLF-------PGARIARIDSDTTSRKGAHEALLNQFANGKADILIGT 319 (505)
T ss_pred cCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhC-------CCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeC
Confidence 566666666543 57889999999988766 789999999999999999
Q ss_pred cccccCCCCCCccEEE--cCCCC-ccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEE
Q psy1907 180 NIAETSLTIDNIIYVI--DPGFC-KQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCA 244 (1320)
Q Consensus 180 dIAe~gldIp~I~~VI--D~g~~-k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~ 244 (1320)
+++++|+|+|+|++|+ |.+.. ..+.|... --+-..+.|++|||||.+.+ |.++
T Consensus 320 ~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~---------E~~~~ll~q~~GRagR~~~~---g~vi 375 (505)
T TIGR00595 320 QMIAKGHHFPNVTLVGVLDADSGLHSPDFRAA---------ERGFQLLTQVAGRAGRAEDP---GQVI 375 (505)
T ss_pred cccccCCCCCcccEEEEEcCcccccCcccchH---------HHHHHHHHHHHhccCCCCCC---CEEE
Confidence 9999999999999885 65531 11112111 11346789999999997765 4565
No 109
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.35 E-value=1.1e-11 Score=154.56 Aligned_cols=162 Identities=22% Similarity=0.216 Sum_probs=123.8
Q ss_pred cEEEEecCcC--HHHHHhhcCCCCEEEeCCccccee-----EEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHH
Q psy1907 52 KLLISSATLD--AQKFSEFFDDAPVFRIPGRRFPVD-----IYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQE 124 (1320)
Q Consensus 52 qlIl~SATl~--~~~f~~~f~~~~vi~i~g~~~pV~-----~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~ 124 (1320)
++..||.|.. .+.|.+.+ +-+++.||....... ..|.. ..+++.+.+..+...|.. +..+|||+++.+
T Consensus 342 kl~GmTGTa~te~~E~~~iY-~l~vv~IPtnkp~~R~d~~d~i~~t--~~~k~~ai~~~i~~~~~~--grpvLV~t~si~ 416 (745)
T TIGR00963 342 KLSGMTGTAKTEEEEFEKIY-NLEVVVVPTNRPVIRKDLSDLVYKT--EEEKWKAVVDEIKERHAK--GQPVLVGTTSVE 416 (745)
T ss_pred hhhccCCCcHHHHHHHHHHh-CCCEEEeCCCCCeeeeeCCCeEEcC--HHHHHHHHHHHHHHHHhc--CCCEEEEeCcHH
Confidence 5777888883 35566666 566777775322111 12222 345566766666666654 457999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCC-------ccEEEcC
Q psy1907 125 EIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDN-------IIYVIDP 197 (1320)
Q Consensus 125 eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~-------I~~VID~ 197 (1320)
.++.++..|.+. ++....|||. +.+|+..+..+..+.-.|+||||+|.||+||+. .-|||++
T Consensus 417 ~se~ls~~L~~~---------gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t 485 (745)
T TIGR00963 417 KSELLSNLLKER---------GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGT 485 (745)
T ss_pred HHHHHHHHHHHc---------CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEec
Confidence 999999999873 7788899998 888888888999999999999999999999988 5599998
Q ss_pred CCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHH
Q psy1907 198 GFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 198 g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~ 250 (1320)
.+ |-|...+.||.|||||.|.. |.+..+.+.+
T Consensus 486 ~~------------------p~s~ri~~q~~GRtGRqG~~---G~s~~~ls~e 517 (745)
T TIGR00963 486 ER------------------HESRRIDNQLRGRSGRQGDP---GSSRFFLSLE 517 (745)
T ss_pred CC------------------CCcHHHHHHHhccccCCCCC---cceEEEEecc
Confidence 76 67788999999999999875 4666666643
No 110
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.32 E-value=9.3e-12 Score=157.89 Aligned_cols=124 Identities=15% Similarity=0.036 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEE
Q psy1907 97 IDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVV 176 (1320)
Q Consensus 97 l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVl 176 (1320)
++.++..+.... ....++|||++|+..++.+++.|.+ .++.+..+||++++.+|..++..|+.|...|+
T Consensus 432 ~~~L~~~L~~~~--~~g~~viIf~~t~~~ae~L~~~L~~---------~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vl 500 (652)
T PRK05298 432 VDDLLSEIRKRV--AKGERVLVTTLTKRMAEDLTDYLKE---------LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVL 500 (652)
T ss_pred HHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHHHHHHhh---------cceeEEEEECCCCHHHHHHHHHHHHcCCceEE
Confidence 444444443332 2246799999999999999999986 37889999999999999999999999999999
Q ss_pred EeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecC
Q psy1907 177 LATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLG 248 (1320)
Q Consensus 177 vATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~ 248 (1320)
|||+++++|+|+|++++||+++.... .-|-+..+|+||+|||||...| .|+.+.+
T Consensus 501 V~t~~L~rGfdlp~v~lVii~d~eif-------------G~~~~~~~yiqr~GR~gR~~~G----~~i~~~~ 555 (652)
T PRK05298 501 VGINLLREGLDIPEVSLVAILDADKE-------------GFLRSERSLIQTIGRAARNVNG----KVILYAD 555 (652)
T ss_pred EEeCHHhCCccccCCcEEEEeCCccc-------------ccCCCHHHHHHHhccccCCCCC----EEEEEec
Confidence 99999999999999999998765211 1256778999999999998665 7887776
No 111
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.31 E-value=2.1e-11 Score=153.41 Aligned_cols=162 Identities=22% Similarity=0.147 Sum_probs=121.1
Q ss_pred cEEEEecCcC--HHHHHhhcCCCCEEEeCCcccceeEE-E---EcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHH
Q psy1907 52 KLLISSATLD--AQKFSEFFDDAPVFRIPGRRFPVDIY-Y---TKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEE 125 (1320)
Q Consensus 52 qlIl~SATl~--~~~f~~~f~~~~vi~i~g~~~pV~~~-y---~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~e 125 (1320)
++-.||.|.. .+.|.+.+ +-+++.||.. .|+... + .-.....+..+.+..+...|.. +..+|||++|.+.
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY-~l~vv~IPtn-kp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~--g~pvLI~t~si~~ 452 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIY-NMEVITIPTN-RPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAK--GQPVLVGTVAIES 452 (796)
T ss_pred hhhccCCCCHHHHHHHHHHh-CCCEEEcCCC-CCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhC--CCCEEEEeCcHHH
Confidence 5677888873 34566655 5667878763 233211 1 0112344556666666555543 5679999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCC---CCcc-----EEEcC
Q psy1907 126 IETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTI---DNII-----YVIDP 197 (1320)
Q Consensus 126 ie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldI---p~I~-----~VID~ 197 (1320)
++.++..|.+. ++....|||++.+.++..+...+++|. |+||||+|.||+|| ++|. |||++
T Consensus 453 se~ls~~L~~~---------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~t 521 (796)
T PRK12906 453 SERLSHLLDEA---------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGT 521 (796)
T ss_pred HHHHHHHHHHC---------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEee
Confidence 99999999873 678889999999999888888888877 99999999999999 5899 99998
Q ss_pred CCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCH
Q psy1907 198 GFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGE 249 (1320)
Q Consensus 198 g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~ 249 (1320)
.+ |-|...+.||.|||||.|.. |.+..+.+.
T Consensus 522 e~------------------pes~ri~~Ql~GRtGRqG~~---G~s~~~~sl 552 (796)
T PRK12906 522 ER------------------HESRRIDNQLRGRSGRQGDP---GSSRFYLSL 552 (796)
T ss_pred ec------------------CCcHHHHHHHhhhhccCCCC---cceEEEEec
Confidence 76 66778899999999999864 456555553
No 112
>PRK00254 ski2-like helicase; Provisional
Probab=99.30 E-value=2.4e-10 Score=147.51 Aligned_cols=119 Identities=18% Similarity=0.146 Sum_probs=83.6
Q ss_pred hhhHHHHHH-HHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEE
Q psy1907 672 YPFKQDLID-AVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYA 750 (1320)
Q Consensus 672 ~~~~~~il~-~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~ 750 (1320)
++...+.+. .+.++..++|++|||||||......++..-.. .++++++.-|.|--|....+++.. + .++|..|+..
T Consensus 25 ~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-~~~~~l~l~P~~aLa~q~~~~~~~-~-~~~g~~v~~~ 101 (720)
T PRK00254 25 YPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-EGGKAVYLVPLKALAEEKYREFKD-W-EKLGLRVAMT 101 (720)
T ss_pred CHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-cCCeEEEEeChHHHHHHHHHHHHH-H-hhcCCEEEEE
Confidence 344455554 47889999999999999998765555443222 234678888999988888887754 2 2456666644
Q ss_pred eecCcc---CCCCccEEEEccHHHHHHHhcC-CCCCCccEEEEcccc
Q psy1907 751 IRFEDC---TSERTIIKYMTDGTLHREFLSE-PDLASYSVMIIDEAH 793 (1320)
Q Consensus 751 irfe~~---~s~~T~i~y~TdG~Llrel~~d-p~L~~ys~iIiDE~H 793 (1320)
...-+. .-.++.|+++|.+.+...+... .++.++++|||||+|
T Consensus 102 ~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H 148 (720)
T PRK00254 102 TGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIH 148 (720)
T ss_pred eCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcC
Confidence 332111 1135679999999987766543 578999999999999
No 113
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.30 E-value=2.2e-11 Score=155.11 Aligned_cols=206 Identities=15% Similarity=0.176 Sum_probs=127.5
Q ss_pred CCCccEEEEeCCCccCcCcch-----HHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhcC-CCCEEEeCCcc----ccee
Q psy1907 16 LASYSVMIIDEAHERTLHTDI-----LFGLVKDIVRFRSDLKLLISSATLDAQKFSEFFD-DAPVFRIPGRR----FPVD 85 (1320)
Q Consensus 16 Ls~~s~iVLDEaHeR~l~td~-----ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~-~~~vi~i~g~~----~pV~ 85 (1320)
++++++|||||+|+-+...+- ...+. .......+.++|++|||...+.+..... ....+.++.+. .| .
T Consensus 256 ~~~l~liVvDEeh~~s~~~~~~p~y~~r~va-~~ra~~~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p-~ 333 (679)
T PRK05580 256 FKNLGLIIVDEEHDSSYKQQEGPRYHARDLA-VVRAKLENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLP-E 333 (679)
T ss_pred ccCCCEEEEECCCccccccCcCCCCcHHHHH-HHHhhccCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCC-e
Confidence 689999999999975543321 11111 1112346789999999998877766432 22334443332 22 2
Q ss_pred EEEEcCCc-------cchHHHHHHHHHHHHhhCCCCCEEEEcCCH-----------------------------------
Q psy1907 86 IYYTKAPE-------ADYIDACVVSILQIHATQPLGDILVFLTGQ----------------------------------- 123 (1320)
Q Consensus 86 ~~y~~~~~-------~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~----------------------------------- 123 (1320)
+....... ...-..++..+.+... ...++|||+|.+
T Consensus 334 v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~--~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~C 411 (679)
T PRK05580 334 VEIIDMRELLRGENGSFLSPPLLEAIKQRLE--RGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRC 411 (679)
T ss_pred EEEEechhhhhhcccCCCCHHHHHHHHHHHH--cCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEEC
Confidence 22222100 0011222222322221 134799998852
Q ss_pred -------------------------HHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCH--HHHHHHcCCCCCCCeEEE
Q psy1907 124 -------------------------EEIETCNEILQDRVRRLGSKIKELIILPVYSNLPT--DMQTKIFLPTPPNARKVV 176 (1320)
Q Consensus 124 -------------------------~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~--~~r~~i~~~~~~g~~kVl 176 (1320)
..++.+.+.|.+.+ ++..+..+|+++.+ .++.++++.|++|+..||
T Consensus 412 h~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~f-------p~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~IL 484 (679)
T PRK05580 412 HHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELF-------PEARILRIDRDTTRRKGALEQLLAQFARGEADIL 484 (679)
T ss_pred CCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhC-------CCCcEEEEeccccccchhHHHHHHHHhcCCCCEE
Confidence 14555566665543 56789999999975 568899999999999999
Q ss_pred EeCcccccCCCCCCccEEE--cCCCC-ccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEE
Q psy1907 177 LATNIAETSLTIDNIIYVI--DPGFC-KQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCA 244 (1320)
Q Consensus 177 vATdIAe~gldIp~I~~VI--D~g~~-k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~ 244 (1320)
|+|+++++|+|+|+|++|+ |.+.. ..+.|.... -+-..+.|++|||||.+.+ |.|+
T Consensus 485 VgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~E---------r~~~~l~q~~GRagR~~~~---g~vi 543 (679)
T PRK05580 485 IGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASE---------RTFQLLTQVAGRAGRAEKP---GEVL 543 (679)
T ss_pred EEChhhccCCCCCCcCEEEEEcCchhccCCccchHH---------HHHHHHHHHHhhccCCCCC---CEEE
Confidence 9999999999999999994 65542 122222111 1246789999999997665 4666
No 114
>KOG0351|consensus
Probab=99.30 E-value=1.7e-11 Score=157.27 Aligned_cols=201 Identities=16% Similarity=0.206 Sum_probs=146.4
Q ss_pred ccEEEEeCCCccC-----cCcch-HHHHHHHHhhcCCCCcEEEEecCcCH---HHHHhhcC--CCCEEEeCCcccceeEE
Q psy1907 19 YSVMIIDEAHERT-----LHTDI-LFGLVKDIVRFRSDLKLLISSATLDA---QKFSEFFD--DAPVFRIPGRRFPVDIY 87 (1320)
Q Consensus 19 ~s~iVLDEaHeR~-----l~td~-ll~llk~l~~~r~~~qlIl~SATl~~---~~f~~~f~--~~~vi~i~g~~~pV~~~ 87 (1320)
+..+||||||.=+ .--|. -+++++ ...+..-+|.++||... +.+.+-++ +++++.- ...+-..+
T Consensus 386 lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~---~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~--sfnR~NL~ 460 (941)
T KOG0351|consen 386 LALFVIDEAHCVSQWGHDFRPSYKRLGLLR---IRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS--SFNRPNLK 460 (941)
T ss_pred eEEEEecHHHHhhhhcccccHHHHHHHHHH---hhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc--cCCCCCce
Confidence 8999999999421 11121 123333 23444668999999955 33444333 4443321 11222333
Q ss_pred EEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCC
Q psy1907 88 YTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLP 167 (1320)
Q Consensus 88 y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~ 167 (1320)
|...+..+ .+.+...+..+....+.+.+||+|.++.++|.++..|.+. ++....+|+||+..+|..|-..
T Consensus 461 yeV~~k~~-~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~---------~~~a~~YHAGl~~~~R~~Vq~~ 530 (941)
T KOG0351|consen 461 YEVSPKTD-KDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSL---------GKSAAFYHAGLPPKERETVQKA 530 (941)
T ss_pred EEEEeccC-ccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHh---------chhhHhhhcCCCHHHHHHHHHH
Confidence 33333322 2334455556666677788999999999999999999874 5788999999999999999999
Q ss_pred CCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEec
Q psy1907 168 TPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVL 247 (1320)
Q Consensus 168 ~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~ 247 (1320)
+-.++.+||+||=.--.|||-|+|++||++++ |-|-+.|-|=+|||||-|.- ..|..+|
T Consensus 531 w~~~~~~VivATVAFGMGIdK~DVR~ViH~~l------------------Pks~E~YYQE~GRAGRDG~~---s~C~l~y 589 (941)
T KOG0351|consen 531 WMSDKIRVIVATVAFGMGIDKPDVRFVIHYSL------------------PKSFEGYYQEAGRAGRDGLP---SSCVLLY 589 (941)
T ss_pred HhcCCCeEEEEEeeccCCCCCCceeEEEECCC------------------chhHHHHHHhccccCcCCCc---ceeEEec
Confidence 99999999999999999999999999999999 44668899999999999864 3899999
Q ss_pred CHHHHhhc
Q psy1907 248 GEEVLRGC 255 (1320)
Q Consensus 248 ~~~~~~~l 255 (1320)
+-.++..+
T Consensus 590 ~~~D~~~l 597 (941)
T KOG0351|consen 590 GYADISEL 597 (941)
T ss_pred chhHHHHH
Confidence 98877655
No 115
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.29 E-value=1.8e-11 Score=156.12 Aligned_cols=233 Identities=19% Similarity=0.195 Sum_probs=161.4
Q ss_pred CCHHHHHHHHcCC-CCCCCccEEEEeCCCccCcCcchHHHHHH--HHhhcCCCCcEEEEecCc-CHHHHHhhcC-----C
Q psy1907 1 MTDGTLHREFLSE-PDLASYSVMIIDEAHERTLHTDILFGLVK--DIVRFRSDLKLLISSATL-DAQKFSEFFD-----D 71 (1320)
Q Consensus 1 ~T~G~LLr~l~~d-~~Ls~~s~iVLDEaHeR~l~td~ll~llk--~l~~~r~~~qlIl~SATl-~~~~f~~~f~-----~ 71 (1320)
||..+|-.++..+ ..+.+++.||+||+| .-.|-.-|+.+ .++..+...++|++|||+ |++.|+.|++ +
T Consensus 211 MTTEILRnMlyrg~~~~~~i~~ViFDEvH---yi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~ 287 (1041)
T COG4581 211 MTTEILRNMLYRGSESLRDIEWVVFDEVH---YIGDRERGVVWEEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQP 287 (1041)
T ss_pred eeHHHHHHHhccCcccccccceEEEEeee---eccccccchhHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCC
Confidence 7888877777776 459999999999999 23333344444 456678889999999999 9999999996 3
Q ss_pred CCEEEeCCcccceeEEEEcC-C-------ccchHHH----HHHH------------------------------------
Q psy1907 72 APVFRIPGRRFPVDIYYTKA-P-------EADYIDA----CVVS------------------------------------ 103 (1320)
Q Consensus 72 ~~vi~i~g~~~pV~~~y~~~-~-------~~~~l~~----~i~~------------------------------------ 103 (1320)
+-++..+.|..|.+.++... . ..++... +...
T Consensus 288 ~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 367 (1041)
T COG4581 288 IHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGR 367 (1041)
T ss_pred eEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccc
Confidence 44555567777777766433 1 1110000 0000
Q ss_pred --HHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHH----------H---------HHhhcCCCCCe-------------EE
Q psy1907 104 --ILQIHATQPLGDILVFLTGQEEIETCNEILQD----------R---------VRRLGSKIKEL-------------II 149 (1320)
Q Consensus 104 --v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~----------~---------~~~l~~~~~~~-------------~v 149 (1320)
++........-.+++|.=++..|+..+..+.. . +..+..+..++ .+
T Consensus 368 ~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGi 447 (1041)
T COG4581 368 PEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGI 447 (1041)
T ss_pred hHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhh
Confidence 11111111224589999999999998887761 1 12222222222 14
Q ss_pred EEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhh
Q psy1907 150 LPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAG 229 (1320)
Q Consensus 150 ~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~G 229 (1320)
..+|+||-+..+..+..-|..|-+|||+||.+.+-||++|.-++|+ +++.| +|.. .-.|++..+|.|.+|
T Consensus 448 avHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l~K---~dG~------~~r~L~~gEy~QmsG 517 (1041)
T COG4581 448 AVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSLSK---FDGN------GHRWLSPGEYTQMSG 517 (1041)
T ss_pred hhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eeeEE---ecCC------ceeecChhHHHHhhh
Confidence 4689999999999999999999999999999999999999877665 44433 3322 346999999999999
Q ss_pred hcCCCCCCCCceEEEEec
Q psy1907 230 VITGFNPLSDFRGCAHVL 247 (1320)
Q Consensus 230 RAGR~g~g~~fg~~~~L~ 247 (1320)
||||.|-. .-|.++...
T Consensus 518 RAGRRGlD-~~G~vI~~~ 534 (1041)
T COG4581 518 RAGRRGLD-VLGTVIVIE 534 (1041)
T ss_pred hhcccccc-ccceEEEec
Confidence 99999976 345666553
No 116
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.29 E-value=2.1e-11 Score=148.48 Aligned_cols=196 Identities=19% Similarity=0.181 Sum_probs=140.1
Q ss_pred CCCCccEEEEeCCCccCcCcchHHHHHHH--HhhcCC-CCcEEEEecCcCHHHHH-hhcCCCCEEEe---CCcccceeEE
Q psy1907 15 DLASYSVMIIDEAHERTLHTDILFGLVKD--IVRFRS-DLKLLISSATLDAQKFS-EFFDDAPVFRI---PGRRFPVDIY 87 (1320)
Q Consensus 15 ~Ls~~s~iVLDEaHeR~l~td~ll~llk~--l~~~r~-~~qlIl~SATl~~~~f~-~~f~~~~vi~i---~g~~~pV~~~ 87 (1320)
.++++..+|+||-|. +|+..+ +..+.. ...+++||||.-+-.++ ..|++-.+..| |..+.||...
T Consensus 381 ~F~~LgLVIiDEQHR--------FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~ 452 (677)
T COG1200 381 EFHNLGLVIIDEQHR--------FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTV 452 (677)
T ss_pred eecceeEEEEecccc--------ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEE
Confidence 389999999999995 333322 222334 46899999999776554 46776655444 4445788887
Q ss_pred EEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHH--------HHHHHHHHHHHhhcCCCCCeEEEEecCCCCHH
Q psy1907 88 YTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIE--------TCNEILQDRVRRLGSKIKELIILPVYSNLPTD 159 (1320)
Q Consensus 88 y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie--------~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~ 159 (1320)
..+.... +..+..+..-.. .+.++-+-||=.++-| ..++.|. ...+++.+..+||.|+.+
T Consensus 453 ~i~~~~~---~~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~-------~~~~~~~vgL~HGrm~~~ 520 (677)
T COG1200 453 VIPHERR---PEVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELK-------SFLPELKVGLVHGRMKPA 520 (677)
T ss_pred EeccccH---HHHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHH-------HHcccceeEEEecCCChH
Confidence 7765433 333333333332 2457888888776554 3334443 334688999999999999
Q ss_pred HHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCC
Q psy1907 160 MQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSD 239 (1320)
Q Consensus 160 ~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~ 239 (1320)
+.+.+++.|++|...|+|||.|.|.|||+|+.++.|=.+- +----++..|=.||+||.+..
T Consensus 521 eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~A-----------------ERFGLaQLHQLRGRVGRG~~q-- 581 (677)
T COG1200 521 EKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENA-----------------ERFGLAQLHQLRGRVGRGDLQ-- 581 (677)
T ss_pred HHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEech-----------------hhhhHHHHHHhccccCCCCcc--
Confidence 9999999999999999999999999999999988772111 112248899999999998876
Q ss_pred ceEEEEecCHH
Q psy1907 240 FRGCAHVLGEE 250 (1320)
Q Consensus 240 fg~~~~L~~~~ 250 (1320)
+.|+.+|...
T Consensus 582 -SyC~Ll~~~~ 591 (677)
T COG1200 582 -SYCVLLYKPP 591 (677)
T ss_pred -eEEEEEeCCC
Confidence 4899988854
No 117
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.28 E-value=1.9e-11 Score=122.54 Aligned_cols=129 Identities=15% Similarity=0.219 Sum_probs=101.6
Q ss_pred eeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHH
Q psy1907 84 VDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTK 163 (1320)
Q Consensus 84 V~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~ 163 (1320)
+..+|...+. .....+...+..... +.+++|||+++...++.+.+.|.+ ....+..+||+++..+|..
T Consensus 2 i~~~~~~~~~-~k~~~i~~~i~~~~~--~~~~~lvf~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~ 69 (131)
T cd00079 2 IKQYVLPVED-EKLEALLELLKEHLK--KGGKVLIFCPSKKMLDELAELLRK---------PGIKVAALHGDGSQEEREE 69 (131)
T ss_pred cEEEEEECCH-HHHHHHHHHHHhccc--CCCcEEEEeCcHHHHHHHHHHHHh---------cCCcEEEEECCCCHHHHHH
Confidence 3444544432 344443333333221 467899999999999999999876 3678999999999999999
Q ss_pred HcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEE
Q psy1907 164 IFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGC 243 (1320)
Q Consensus 164 i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~ 243 (1320)
+++.|.+|..+||++|+.++.|+|+|++++||..+. |.+..++.|+.||+||.|.. |.|
T Consensus 70 ~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~------------------~~~~~~~~Q~~GR~~R~~~~---~~~ 128 (131)
T cd00079 70 VLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDL------------------PWSPSSYLQRIGRAGRAGQK---GTA 128 (131)
T ss_pred HHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCC------------------CCCHHHheecccccccCCCC---ceE
Confidence 999999999999999999999999999999997654 66788999999999999853 355
Q ss_pred EE
Q psy1907 244 AH 245 (1320)
Q Consensus 244 ~~ 245 (1320)
+.
T Consensus 129 ~~ 130 (131)
T cd00079 129 IL 130 (131)
T ss_pred Ee
Confidence 53
No 118
>KOG0329|consensus
Probab=99.27 E-value=2.5e-12 Score=137.77 Aligned_cols=180 Identities=15% Similarity=0.211 Sum_probs=114.9
Q ss_pred CHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHH--HH-HhhcCCCCEEEe
Q psy1907 2 TDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQ--KF-SEFFDDAPVFRI 77 (1320)
Q Consensus 2 T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~--~f-~~~f~~~~vi~i 77 (1320)
||||++....+..+ |++++++||||++...-..|.-.++..+....+.+-|++.||||+..+ .. .+|..++--+-+
T Consensus 168 TPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~v 247 (387)
T KOG0329|consen 168 TPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFV 247 (387)
T ss_pred CcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhc
Confidence 99999999888776 999999999999744333444444444444466788999999999543 22 334333221222
Q ss_pred CC----cccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEec
Q psy1907 78 PG----RRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVY 153 (1320)
Q Consensus 78 ~g----~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH 153 (1320)
.. ..+....+|.+-....+...... ++. ..+-..++||+.+...+
T Consensus 248 DdE~KLtLHGLqQ~YvkLke~eKNrkl~d-LLd---~LeFNQVvIFvKsv~Rl--------------------------- 296 (387)
T KOG0329|consen 248 DDEAKLTLHGLQQYYVKLKENEKNRKLND-LLD---VLEFNQVVIFVKSVQRL--------------------------- 296 (387)
T ss_pred cchhhhhhhhHHHHHHhhhhhhhhhhhhh-hhh---hhhhcceeEeeehhhhh---------------------------
Confidence 21 12333444544322222111111 111 11123577777654320
Q ss_pred CCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCC
Q psy1907 154 SNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITG 233 (1320)
Q Consensus 154 ~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR 233 (1320)
. | .+| +||||+-.||+||..|..|+||++ |-+..+|.||.|||||
T Consensus 297 ----------~---f--~kr--~vat~lfgrgmdiervNi~~NYdm------------------p~~~DtYlHrv~rAgr 341 (387)
T KOG0329|consen 297 ----------S---F--QKR--LVATDLFGRGMDIERVNIVFNYDM------------------PEDSDTYLHRVARAGR 341 (387)
T ss_pred ----------h---h--hhh--hHHhhhhccccCcccceeeeccCC------------------CCCchHHHHHhhhhhc
Confidence 0 1 123 899999999999999999999998 4556889999999999
Q ss_pred CCCCCCceEEEEecCHH
Q psy1907 234 FNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 234 ~g~g~~fg~~~~L~~~~ 250 (1320)
.|.+ |.++.+.+.+
T Consensus 342 fGtk---glaitfvs~e 355 (387)
T KOG0329|consen 342 FGTK---GLAITFVSDE 355 (387)
T ss_pred cccc---cceeehhcch
Confidence 9987 6888887754
No 119
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.21 E-value=1.1e-10 Score=147.65 Aligned_cols=162 Identities=18% Similarity=0.185 Sum_probs=118.4
Q ss_pred cEEEEecCc--CHHHHHhhcCCCCEEEeCCccccee------EEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCH
Q psy1907 52 KLLISSATL--DAQKFSEFFDDAPVFRIPGRRFPVD------IYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQ 123 (1320)
Q Consensus 52 qlIl~SATl--~~~~f~~~f~~~~vi~i~g~~~pV~------~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~ 123 (1320)
++-.|+.|. ....|.+.+ +-+++.||... |+. ..| ....++..+++..+...+.. +..||||++|.
T Consensus 535 kLaGMTGTA~te~~Ef~~iY-~L~Vv~IPTnr-P~~R~D~~d~vy--~t~~eK~~Ali~~I~~~~~~--grpVLIft~Sv 608 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIY-KLDVVVIPTNK-PIVRKDMDDLVY--KTRREKYNAIVLKVEELQKK--GQPVLVGTASV 608 (1025)
T ss_pred hhcccCCCChhHHHHHHHHh-CCcEEECCCCC-CcceecCCCeEe--cCHHHHHHHHHHHHHHHhhC--CCCEEEEeCcH
Confidence 566677777 234455555 45677777532 321 222 22345666766666665543 46799999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCC---CccEE-----E
Q psy1907 124 EEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTID---NIIYV-----I 195 (1320)
Q Consensus 124 ~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp---~I~~V-----I 195 (1320)
+..+.++.+|.+. ++....||+ .+.+|+..+..+..+.-.|+||||+|.||+||+ +|..| |
T Consensus 609 e~sE~Ls~~L~~~---------gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VI 677 (1025)
T PRK12900 609 EVSETLSRMLRAK---------RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFIL 677 (1025)
T ss_pred HHHHHHHHHHHHc---------CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceee
Confidence 9999999999873 677888997 588888889899999999999999999999999 55433 5
Q ss_pred cCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHH
Q psy1907 196 DPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEV 251 (1320)
Q Consensus 196 D~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~ 251 (1320)
++.. |-|...+.||.|||||.|.. |.+..+.+.++
T Consensus 678 gter------------------hes~Rid~Ql~GRtGRqGdp---GsS~ffvSleD 712 (1025)
T PRK12900 678 GSER------------------HESRRIDRQLRGRAGRQGDP---GESVFYVSLED 712 (1025)
T ss_pred CCCC------------------CchHHHHHHHhhhhhcCCCC---cceEEEechhH
Confidence 5443 56677899999999999975 57777777543
No 120
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.19 E-value=1.6e-11 Score=112.97 Aligned_cols=73 Identities=18% Similarity=0.183 Sum_probs=69.0
Q ss_pred CCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhH
Q psy1907 145 KELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASA 224 (1320)
Q Consensus 145 ~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~ 224 (1320)
.++.+..+||++++.+|..+++.|..+..+|||||++++.|||+|++++||.++. |-|..+|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~------------------~~~~~~~ 67 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDP------------------PWSPEEY 67 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSS------------------ESSHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccccccccccccccccccc------------------CCCHHHH
Confidence 4789999999999999999999999999999999999999999999999999876 6688999
Q ss_pred HHHhhhcCCCC
Q psy1907 225 NQRAGVITGFN 235 (1320)
Q Consensus 225 ~QR~GRAGR~g 235 (1320)
.||+||+||.|
T Consensus 68 ~Q~~GR~~R~g 78 (78)
T PF00271_consen 68 IQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSTTT
T ss_pred HHHhhcCCCCC
Confidence 99999999986
No 121
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.19 E-value=1.1e-10 Score=149.05 Aligned_cols=199 Identities=20% Similarity=0.213 Sum_probs=146.9
Q ss_pred CCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhcCC---CCEEEe-CCcccceeEEE
Q psy1907 13 EPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFFDD---APVFRI-PGRRFPVDIYY 88 (1320)
Q Consensus 13 d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~~---~~vi~i-~g~~~pV~~~y 88 (1320)
|-.+.++..+||||=|.-++. --..+..++.+.-++-||||.-+-.+.--+.+ -.+|.. |..++||+.+.
T Consensus 711 dv~FkdLGLlIIDEEqRFGVk------~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V 784 (1139)
T COG1197 711 DVKFKDLGLLIIDEEQRFGVK------HKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFV 784 (1139)
T ss_pred CcEEecCCeEEEechhhcCcc------HHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEE
Confidence 344899999999999853322 22234446788889999999976655443322 224443 35679999987
Q ss_pred EcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCC
Q psy1907 89 TKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPT 168 (1320)
Q Consensus 89 ~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~ 168 (1320)
.+... ..+.++ ++.-+. .+|++-.-.|..++|+.+++.|.+.. |+..|...||.|+..+-++++..|
T Consensus 785 ~~~d~-~~ireA---I~REl~--RgGQvfYv~NrV~~Ie~~~~~L~~LV-------PEarI~vaHGQM~e~eLE~vM~~F 851 (1139)
T COG1197 785 SEYDD-LLIREA---ILRELL--RGGQVFYVHNRVESIEKKAERLRELV-------PEARIAVAHGQMRERELEEVMLDF 851 (1139)
T ss_pred ecCCh-HHHHHH---HHHHHh--cCCEEEEEecchhhHHHHHHHHHHhC-------CceEEEEeecCCCHHHHHHHHHHH
Confidence 66432 222222 222222 26889888999999999999999874 789999999999999999999999
Q ss_pred CCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecC
Q psy1907 169 PPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLG 248 (1320)
Q Consensus 169 ~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~ 248 (1320)
-+|...|||||.|.|+|||||+..-+|=-. .. ----++..|-.||+||...- +.||.+|.
T Consensus 852 ~~g~~dVLv~TTIIEtGIDIPnANTiIIe~----------AD-------~fGLsQLyQLRGRVGRS~~~---AYAYfl~p 911 (1139)
T COG1197 852 YNGEYDVLVCTTIIETGIDIPNANTIIIER----------AD-------KFGLAQLYQLRGRVGRSNKQ---AYAYFLYP 911 (1139)
T ss_pred HcCCCCEEEEeeeeecCcCCCCCceEEEec----------cc-------cccHHHHHHhccccCCccce---EEEEEeec
Confidence 999999999999999999999998777110 00 11237889999999998774 47999988
Q ss_pred HH
Q psy1907 249 EE 250 (1320)
Q Consensus 249 ~~ 250 (1320)
.+
T Consensus 912 ~~ 913 (1139)
T COG1197 912 PQ 913 (1139)
T ss_pred Cc
Confidence 53
No 122
>KOG0952|consensus
Probab=99.18 E-value=3.9e-10 Score=140.52 Aligned_cols=225 Identities=17% Similarity=0.157 Sum_probs=155.4
Q ss_pred CCCCccEEEEeCCC----ccCcCcchHHHHHHHHh-hcCCCCcEEEEecCc-CHHHHHhhcCC---CCEEEeCCcccce-
Q psy1907 15 DLASYSVMIIDEAH----ERTLHTDILFGLVKDIV-RFRSDLKLLISSATL-DAQKFSEFFDD---APVFRIPGRRFPV- 84 (1320)
Q Consensus 15 ~Ls~~s~iVLDEaH----eR~l~td~ll~llk~l~-~~r~~~qlIl~SATl-~~~~f~~~f~~---~~vi~i~g~~~pV- 84 (1320)
+.+.+..|||||+| +|+.-...+.+-..++. ......|+|.+|||+ |-+.++.|++- ..++...++..||
T Consensus 235 l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvp 314 (1230)
T KOG0952|consen 235 LFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVP 314 (1230)
T ss_pred hhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccc
Confidence 36889999999999 46554444443333322 344568999999999 78999999974 2355556655454
Q ss_pred -eEEEEcCCcc------chHH-HHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCC-----C--C---
Q psy1907 85 -DIYYTKAPEA------DYID-ACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKI-----K--E--- 146 (1320)
Q Consensus 85 -~~~y~~~~~~------~~l~-~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~-----~--~--- 146 (1320)
+..+.-.+.. +.++ .+..-+...+.. +..+|||+.++.+.-..++.|.+.....+... + +
T Consensus 315 L~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~--g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~ 392 (1230)
T KOG0952|consen 315 LTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQE--GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLK 392 (1230)
T ss_pred eeeeEEeeecccchhhhhhHHHHHHHHHHHHHHc--CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHH
Confidence 4444333322 1111 122223333333 46799999999999999999987654433211 1 1
Q ss_pred ----eEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHh
Q psy1907 147 ----LIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKA 222 (1320)
Q Consensus 147 ----~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~ 222 (1320)
..+..+|+||.-++|..+..-|..|.++|++||..++-|+++|+=-++|- ....||+..|. ..-.+..
T Consensus 393 elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIK----GT~~ydsskg~----f~dlgil 464 (1230)
T KOG0952|consen 393 ELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIK----GTQVYDSSKGS----FVDLGIL 464 (1230)
T ss_pred HHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEec----CCcccccccCc----eeeehHH
Confidence 34566899999999999999999999999999999999999998655552 25679988873 3456778
Q ss_pred hHHHHhhhcCCCCCCCCceEEEEecCHH
Q psy1907 223 SANQRAGVITGFNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 223 s~~QR~GRAGR~g~g~~fg~~~~L~~~~ 250 (1320)
...|--|||||.+=++ .|..+..-+.+
T Consensus 465 DVlQifGRAGRPqFd~-~G~giIiTt~d 491 (1230)
T KOG0952|consen 465 DVLQIFGRAGRPQFDS-SGEGIIITTRD 491 (1230)
T ss_pred HHHHHHhccCCCCCCC-CceEEEEeccc
Confidence 9999999999986542 25666555543
No 123
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.17 E-value=7.4e-11 Score=152.85 Aligned_cols=120 Identities=11% Similarity=0.100 Sum_probs=100.2
Q ss_pred HHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCC--CCeEEEEeCc
Q psy1907 103 SILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPP--NARKVVLATN 180 (1320)
Q Consensus 103 ~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~--g~~kVlvATd 180 (1320)
.+..+.....+.++|||+++++.++.+.+.|... .++.+..+||+|++.+|.++++.|.. |..+|+|||+
T Consensus 483 ~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~--------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTd 554 (956)
T PRK04914 483 WLIDFLKSHRSEKVLVICAKAATALQLEQALRER--------EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSE 554 (956)
T ss_pred HHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc--------cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEech
Confidence 3455555555678999999999999999999543 47889999999999999999999976 4699999999
Q ss_pred ccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCH
Q psy1907 181 IAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGE 249 (1320)
Q Consensus 181 IAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~ 249 (1320)
++++|+|++.+++||++++ |-+.+.|.||+||+||.|..... .+|.++.+
T Consensus 555 vgseGlNlq~a~~VInfDl------------------P~nP~~~eQRIGR~~RiGQ~~~V-~i~~~~~~ 604 (956)
T PRK04914 555 IGSEGRNFQFASHLVLFDL------------------PFNPDLLEQRIGRLDRIGQKHDI-QIHVPYLE 604 (956)
T ss_pred hhccCCCcccccEEEEecC------------------CCCHHHHHHHhcccccCCCCceE-EEEEccCC
Confidence 9999999999999999998 67789999999999998875322 34444443
No 124
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.17 E-value=7.2e-10 Score=146.73 Aligned_cols=121 Identities=10% Similarity=0.175 Sum_probs=92.2
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCe-EEEEeCcccccCCCCCC
Q psy1907 112 PLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNAR-KVVLATNIAETSLTIDN 190 (1320)
Q Consensus 112 ~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~-kVlvATdIAe~gldIp~ 190 (1320)
.+|++|||+.+.++++.+++.|.+.+....++.....+..++|+.+. +..+++.|+++.. +|+|+++++.+|+|+|.
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~--~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDK--PDQLIRRFKNERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccc--hHHHHHHHhCCCCCeEEEEecccccCCCccc
Confidence 35899999999999999999998765443233334456678998764 4668889988765 89999999999999999
Q ss_pred ccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCC--CCCceEEEEecC-HHHHhhc
Q psy1907 191 IIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNP--LSDFRGCAHVLG-EEVLRGC 255 (1320)
Q Consensus 191 I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~--g~~fg~~~~L~~-~~~~~~l 255 (1320)
|..||-... +-|...|.||+||+.|..+ || .++.+++ -..+..+
T Consensus 775 v~~vVf~rp------------------vkS~~lf~QmIGRgtR~~~~~~K---~~f~I~D~vg~~~~l 821 (1123)
T PRK11448 775 ICNLVFLRR------------------VRSRILYEQMLGRATRLCPEIGK---THFRIFDAVDIYEAL 821 (1123)
T ss_pred ccEEEEecC------------------CCCHHHHHHHHhhhccCCccCCC---ceEEEEehHHHHHhc
Confidence 999996543 4577889999999999988 67 3444444 2334433
No 125
>KOG0951|consensus
Probab=99.11 E-value=4.1e-10 Score=141.58 Aligned_cols=212 Identities=17% Similarity=0.187 Sum_probs=145.1
Q ss_pred CCCccEEEEeCCCccCcCcc---hHHHHH----HHHhhcCCCCcEEEEecCc-CHHHHHhhcCCCC--EEEe--CCcccc
Q psy1907 16 LASYSVMIIDEAHERTLHTD---ILFGLV----KDIVRFRSDLKLLISSATL-DAQKFSEFFDDAP--VFRI--PGRRFP 83 (1320)
Q Consensus 16 Ls~~s~iVLDEaHeR~l~td---~ll~ll----k~l~~~r~~~qlIl~SATl-~~~~f~~~f~~~~--vi~i--~g~~~p 83 (1320)
.+-|+.+||||+| +++-| .+.++. +.........|++.+|||+ |-+..+.|+.-.+ ++.. .=|+.|
T Consensus 435 ~qlvrLlIIDEIH--LLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvP 512 (1674)
T KOG0951|consen 435 EQLVRLLIIDEIH--LLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVP 512 (1674)
T ss_pred HHHHHHHhhhhhh--hcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCC
Confidence 4578899999998 22222 222222 2222234578999999999 5566666553222 2222 235567
Q ss_pred eeEEEEcCCccchHH---HHHHHH-HHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHH----------Hhhc--------
Q psy1907 84 VDIYYTKAPEADYID---ACVVSI-LQIHATQPLGDILVFLTGQEEIETCNEILQDRV----------RRLG-------- 141 (1320)
Q Consensus 84 V~~~y~~~~~~~~l~---~~i~~v-~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~----------~~l~-------- 141 (1320)
.++.|+.....+-+. +.-... -.+...-..+++|||+-++.+.-+.+..++..+ +.-+
T Consensus 513 L~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrt 592 (1674)
T KOG0951|consen 513 LKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRT 592 (1674)
T ss_pred ccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhh
Confidence 777776544332222 111111 122233335889999999999999999887322 1110
Q ss_pred ----------CCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCc
Q psy1907 142 ----------SKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGM 211 (1320)
Q Consensus 142 ----------~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~ 211 (1320)
.++.+..+..+|+||...+|..+..-|..|.++|+|+|-.+|.|++.|+=+++|- -..+|||..|
T Consensus 593 ea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViik----gtqvy~pekg- 667 (1674)
T KOG0951|consen 593 EAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYDPEKG- 667 (1674)
T ss_pred hhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEec----CccccCcccC-
Confidence 1122456788999999999999999999999999999999999999999877763 2567999998
Q ss_pred cccceeccCHhhHHHHhhhcCCCCCC
Q psy1907 212 ESLTVVPISKASANQRAGVITGFNPL 237 (1320)
Q Consensus 212 ~~l~~~piSk~s~~QR~GRAGR~g~g 237 (1320)
+..++|+-+..||.|||||.+-+
T Consensus 668 ---~w~elsp~dv~qmlgragrp~~D 690 (1674)
T KOG0951|consen 668 ---RWTELSPLDVMQMLGRAGRPQYD 690 (1674)
T ss_pred ---ccccCCHHHHHHHHhhcCCCccC
Confidence 67789999999999999998754
No 126
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.10 E-value=2.5e-10 Score=146.90 Aligned_cols=186 Identities=20% Similarity=0.185 Sum_probs=118.7
Q ss_pred CccEEEEeCCCccCcCc--chHHHHHHHHhhcCCCCcEEEEecCcCH---HHHHhhcCCCCEEEeCCcccceeE--EEEc
Q psy1907 18 SYSVMIIDEAHERTLHT--DILFGLVKDIVRFRSDLKLLISSATLDA---QKFSEFFDDAPVFRIPGRRFPVDI--YYTK 90 (1320)
Q Consensus 18 ~~s~iVLDEaHeR~l~t--d~ll~llk~l~~~r~~~qlIl~SATl~~---~~f~~~f~~~~vi~i~g~~~pV~~--~y~~ 90 (1320)
-.|.+|+||+|-..-++ -++.++++.+ ...+..+|+||||++. +.+..+++....+...-...|... ....
T Consensus 338 ~~S~vIlDE~h~~~~~~~~~~l~~~i~~l--~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~ 415 (733)
T COG1203 338 LTSLVILDEVHLYADETMLAALLALLEAL--AEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKR 415 (733)
T ss_pred HhhchhhccHHhhcccchHHHHHHHHHHH--HhCCCCEEEEecCCCHHHHHHHHHHHhcccceecccccccccccccccc
Confidence 46799999999544442 2233333333 2346789999999976 445555543222221111011000 0000
Q ss_pred CCccchHHHH--HHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCC
Q psy1907 91 APEADYIDAC--VVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPT 168 (1320)
Q Consensus 91 ~~~~~~l~~~--i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~ 168 (1320)
....+..+.. -....-.......+++||-+||...+..++..|... ...++.+||.+....|.+..+..
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~---------~~~v~LlHSRf~~~dR~~ke~~l 486 (733)
T COG1203 416 KERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEK---------GPKVLLLHSRFTLKDREEKEREL 486 (733)
T ss_pred ccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhc---------CCCEEEEecccchhhHHHHHHHH
Confidence 0001111110 001111122333678999999999999999999874 12799999999999998776632
Q ss_pred ----CCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCC
Q psy1907 169 ----PPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFN 235 (1320)
Q Consensus 169 ----~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g 235 (1320)
..+.-.|+|||-+.|.|+||+ .+.+| +.+.+..+.+||+||++|.|
T Consensus 487 ~~~~~~~~~~IvVaTQVIEagvDid-fd~mI--------------------Te~aPidSLIQR~GRv~R~g 536 (733)
T COG1203 487 KKLFKQNEGFIVVATQVIEAGVDID-FDVLI--------------------TELAPIDSLIQRAGRVNRHG 536 (733)
T ss_pred HHHHhccCCeEEEEeeEEEEEeccc-cCeee--------------------ecCCCHHHHHHHHHHHhhcc
Confidence 456788999999999999996 66655 56788899999999999998
No 127
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.08 E-value=6.8e-10 Score=111.13 Aligned_cols=106 Identities=30% Similarity=0.305 Sum_probs=88.3
Q ss_pred EEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccC------CCC
Q psy1907 687 VLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCT------SER 760 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~------s~~ 760 (1320)
.++|.|+||||||+++..++.+.......++|+++.|++..+.....++...... +..+.+-.....+. ...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSGK 79 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcCC
Confidence 5799999999999999999887655434457999999999999999998887654 66788877777665 568
Q ss_pred ccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 761 TIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 761 T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
..|.++|.+.+.+.+.... ....+++|||||+|.
T Consensus 80 ~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~ 114 (144)
T cd00046 80 TDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHR 114 (144)
T ss_pred CCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHH
Confidence 8999999999999887664 566799999999993
No 128
>KOG0352|consensus
Probab=99.08 E-value=2.4e-10 Score=130.24 Aligned_cols=200 Identities=18% Similarity=0.170 Sum_probs=136.8
Q ss_pred CCccEEEEeCCCc-----cCcCcchH-HHHHHHHhhcCCCCcEEEEecCcCHHHHHhhcCCCCEEEeCCcccceeEEEEc
Q psy1907 17 ASYSVMIIDEAHE-----RTLHTDIL-FGLVKDIVRFRSDLKLLISSATLDAQKFSEFFDDAPVFRIPGRRFPVDIYYTK 90 (1320)
Q Consensus 17 s~~s~iVLDEaHe-----R~l~td~l-l~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~~~~vi~i~g~~~pV~~~y~~ 90 (1320)
.-++++|+||||. ++..-|.| +|-|+. ..++.-.+.+.||-+++.-.+.|.. -.-..||.++-++
T Consensus 140 ~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS---~~~~vpwvALTATA~~~VqEDi~~q------L~L~~PVAiFkTP 210 (641)
T KOG0352|consen 140 DVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRS---VCPGVPWVALTATANAKVQEDIAFQ------LKLRNPVAIFKTP 210 (641)
T ss_pred ceeeeEEechhhhHhhhccccCcchhhhhhHHh---hCCCCceEEeecccChhHHHHHHHH------HhhcCcHHhccCc
Confidence 4578999999993 34444544 455554 4466778999999977543332210 0012233333222
Q ss_pred CCcc---------chHHHHHHHHHHH----H-------hhC--CCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeE
Q psy1907 91 APEA---------DYIDACVVSILQI----H-------ATQ--PLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELI 148 (1320)
Q Consensus 91 ~~~~---------~~l~~~i~~v~~i----~-------~~~--~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~ 148 (1320)
.-.. +.+.+....+-.. . .+. ..|.-||+|.|++++|.++-.|.. .++.
T Consensus 211 ~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~---------~Gi~ 281 (641)
T KOG0352|consen 211 TFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEI---------AGIP 281 (641)
T ss_pred chhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhh---------cCcc
Confidence 1111 1111111111111 1 111 147889999999999999999976 4888
Q ss_pred EEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHh
Q psy1907 149 ILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRA 228 (1320)
Q Consensus 149 v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~ 228 (1320)
...+|+||...+|..+-+.--++..-||+||+--..|+|-|+|++||+-+. +-+.+-|-|-.
T Consensus 282 A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~------------------~qn~AgYYQES 343 (641)
T KOG0352|consen 282 AMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSP------------------SQNLAGYYQES 343 (641)
T ss_pred hHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCc------------------hhhhHHHHHhc
Confidence 999999999999999988888899999999999999999999999998554 45668899999
Q ss_pred hhcCCCCCCCCceEEEEecCHHHHhhc
Q psy1907 229 GVITGFNPLSDFRGCAHVLGEEVLRGC 255 (1320)
Q Consensus 229 GRAGR~g~g~~fg~~~~L~~~~~~~~l 255 (1320)
|||||-|.-. .|=.-|++++-+.+
T Consensus 344 GRAGRDGk~S---yCRLYYsR~D~~~i 367 (641)
T KOG0352|consen 344 GRAGRDGKRS---YCRLYYSRQDKNAL 367 (641)
T ss_pred cccccCCCcc---ceeeeecccchHHH
Confidence 9999999863 45445666665544
No 129
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.05 E-value=2.2e-09 Score=137.13 Aligned_cols=116 Identities=20% Similarity=0.187 Sum_probs=86.4
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecC
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFE 754 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe 754 (1320)
+..+-..+.++..++|++|||||||-..=-.++.. ...++++++.+-|-|.-|...++... .-+.+|-.||-..+.-
T Consensus 37 q~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~-l~~~~~k~vYivPlkALa~Ek~~~~~--~~~~~GirV~~~TgD~ 113 (766)
T COG1204 37 QEAVEKGLLSDENVLISAPTGSGKTLIALLAILST-LLEGGGKVVYIVPLKALAEEKYEEFS--RLEELGIRVGISTGDY 113 (766)
T ss_pred HHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHH-HHhcCCcEEEEeChHHHHHHHHHHhh--hHHhcCCEEEEecCCc
Confidence 44555555668999999999999996655555443 22224578888998877777777766 2255677777776665
Q ss_pred ccCC---CCccEEEEccHHHHHHHhcCC-CCCCccEEEEcccc
Q psy1907 755 DCTS---ERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAH 793 (1320)
Q Consensus 755 ~~~s---~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~H 793 (1320)
+... .++.|+.+|..-+-.-+.+.| ++..+++|||||+|
T Consensus 114 ~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH 156 (766)
T COG1204 114 DLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIH 156 (766)
T ss_pred ccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeee
Confidence 5554 578999999999887777776 68899999999999
No 130
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.02 E-value=3.2e-09 Score=134.23 Aligned_cols=124 Identities=21% Similarity=0.174 Sum_probs=89.8
Q ss_pred hhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCC-CCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEE
Q psy1907 672 YPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTK-DKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYA 750 (1320)
Q Consensus 672 ~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~-~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~ 750 (1320)
+++..+.+..+.+++-+|+.|+||||||......+++.-... .+..++++.|.|-.|..+|..+..-.+...|-.|...
T Consensus 30 tpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~ 109 (629)
T PRK11634 30 SPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVAL 109 (629)
T ss_pred CHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEE
Confidence 445667788888899999999999999997655444432211 2346899999999999988887655443334444433
Q ss_pred eecCc------cCCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEcccccc
Q psy1907 751 IRFED------CTSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHPK 795 (1320)
Q Consensus 751 irfe~------~~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HER 795 (1320)
....+ .....+.|+++|.|.|+..+.... .|+++++|||||||+-
T Consensus 110 ~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~m 161 (629)
T PRK11634 110 YGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEM 161 (629)
T ss_pred ECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHH
Confidence 32222 123457899999999999888765 6899999999999974
No 131
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.00 E-value=5.7e-10 Score=102.32 Aligned_cols=72 Identities=25% Similarity=0.250 Sum_probs=67.7
Q ss_pred CeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHH
Q psy1907 146 ELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASAN 225 (1320)
Q Consensus 146 ~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~ 225 (1320)
++.+..+||++++.+|..++..|..+..+||++|++++.|+|++++++||.++. |.+...+.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~------------------~~~~~~~~ 72 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL------------------PWSPASYI 72 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCC------------------CCCHHHHH
Confidence 678999999999999999999999999999999999999999999999998776 67889999
Q ss_pred HHhhhcCCCC
Q psy1907 226 QRAGVITGFN 235 (1320)
Q Consensus 226 QR~GRAGR~g 235 (1320)
|+.||+||.|
T Consensus 73 Q~~gR~~R~g 82 (82)
T smart00490 73 QRIGRAGRAG 82 (82)
T ss_pred HhhcccccCC
Confidence 9999999975
No 132
>KOG4150|consensus
Probab=98.99 E-value=2.1e-09 Score=125.70 Aligned_cols=201 Identities=13% Similarity=0.063 Sum_probs=142.2
Q ss_pred CCCccEEEEeCCCccCcCcch-HHHHHHHHhh------cCCCCcEEEEecCc-CH-HHHHhhcC--CCCEEEeCCcccce
Q psy1907 16 LASYSVMIIDEAHERTLHTDI-LFGLVKDIVR------FRSDLKLLISSATL-DA-QKFSEFFD--DAPVFRIPGRRFPV 84 (1320)
Q Consensus 16 Ls~~s~iVLDEaHeR~l~td~-ll~llk~l~~------~r~~~qlIl~SATl-~~-~~f~~~f~--~~~vi~i~g~~~pV 84 (1320)
+-+..+++.||.|-...-+.. ....++.+.+ ...+++++-.|||+ ++ ...++.|+ ...++.++|.+..-
T Consensus 410 ~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~ 489 (1034)
T KOG4150|consen 410 VFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSE 489 (1034)
T ss_pred HHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCcc
Confidence 345677889999843222221 2223343333 23578999999999 44 55566665 34568888887666
Q ss_pred eEEEEcCCc---------cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCC
Q psy1907 85 DIYYTKAPE---------ADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSN 155 (1320)
Q Consensus 85 ~~~y~~~~~---------~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~ 155 (1320)
+.+.+..|. .+++-....++.++... .-.+|.||+++.-+|.+....++.+-.-++++ --.+..+.||
T Consensus 490 K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~--~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~L-V~~i~SYRGG 566 (1034)
T KOG4150|consen 490 KLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQH--GLRCIAFCPSRKLCELVLCLTREILAETAPHL-VEAITSYRGG 566 (1034)
T ss_pred ceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHc--CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHH-HHHHHhhcCc
Confidence 665554432 34444444444444333 34799999999999887776665543222211 1136678899
Q ss_pred CCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCC
Q psy1907 156 LPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFN 235 (1320)
Q Consensus 156 l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g 235 (1320)
...++|.+|....-.|+.+-|||||.+|.||||.+++.|+.+|| |.|.+.+.|..|||||..
T Consensus 567 Y~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GF------------------P~S~aNl~QQ~GRAGRRN 628 (1034)
T KOG4150|consen 567 YIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGF------------------PGSIANLWQQAGRAGRRN 628 (1034)
T ss_pred cchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccC------------------chhHHHHHHHhccccccC
Confidence 99999999998888899999999999999999999999999999 789999999999999987
Q ss_pred CC
Q psy1907 236 PL 237 (1320)
Q Consensus 236 ~g 237 (1320)
..
T Consensus 629 k~ 630 (1034)
T KOG4150|consen 629 KP 630 (1034)
T ss_pred CC
Confidence 65
No 133
>PTZ00424 helicase 45; Provisional
Probab=98.97 E-value=5.1e-09 Score=126.22 Aligned_cols=121 Identities=17% Similarity=0.142 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHc-cCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEe
Q psy1907 673 PFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEA-GFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAI 751 (1320)
Q Consensus 673 ~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~-~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~i 751 (1320)
+...+.+..+.+++-++++||||||||......+++. .....++++++.-|+|--|..+.+... ..+..++..++-.+
T Consensus 53 ~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~-~~~~~~~~~~~~~~ 131 (401)
T PTZ00424 53 AIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVL-ALGDYLKVRCHACV 131 (401)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHH-HHhhhcCceEEEEE
Confidence 3455677777788888999999999998543333321 222235579999999988877665433 33333333332222
Q ss_pred ecC------ccCCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 752 RFE------DCTSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 752 rfe------~~~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
... +.......|+++|.|.|++.+.... .+.++++|||||||.
T Consensus 132 g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~ 181 (401)
T PTZ00424 132 GGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE 181 (401)
T ss_pred CCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH
Confidence 111 1122346899999999999888765 689999999999993
No 134
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.97 E-value=5.8e-09 Score=128.25 Aligned_cols=121 Identities=20% Similarity=0.174 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCC-CCcEEEEecccHHHHHHHHHHHHHHhCCCC-CCeeeEE
Q psy1907 673 PFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTK-DKMKIGCTQPRRVAAMSVSARVAEEMGVKL-GCEVGYA 750 (1320)
Q Consensus 673 ~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~-~~~~I~~tQPRRvAA~svA~rva~e~~~~l-G~~VGY~ 750 (1320)
+...+.+..+.+++-+|++|+||||||+.....+++..... .+..+++.-|.|-.|..+++.+-. ++... +-.|..-
T Consensus 29 ~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~-~~~~~~~~~v~~~ 107 (460)
T PRK11776 29 PIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRR-LARFIPNIKVLTL 107 (460)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHH-HHhhCCCcEEEEE
Confidence 45677788888899999999999999987544444432111 233466677999888777765532 22111 2333221
Q ss_pred eecCc------cCCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 751 IRFED------CTSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 751 irfe~------~~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
....+ .....+.|+++|.|.|+..+.... .+.++++|||||||+
T Consensus 108 ~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 108 CGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR 158 (460)
T ss_pred ECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH
Confidence 11111 112467899999999999887644 689999999999995
No 135
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.93 E-value=1.1e-08 Score=124.71 Aligned_cols=121 Identities=25% Similarity=0.250 Sum_probs=86.2
Q ss_pred hhhHHHHHHHHHhCCEEEEEcCCCCchhcH--HH--HHHHHccCCC-CCcEEEEecccHHHHHHHHHHHHHHhCCCCCCe
Q psy1907 672 YPFKQDLIDAVRDHQVLIIEGETGSGKTTQ--IP--QYLHEAGFTK-DKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCE 746 (1320)
Q Consensus 672 ~~~~~~il~~i~~~~v~ii~geTGsGKTTq--vP--q~l~e~~~~~-~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~ 746 (1320)
+++..+.+.++.+++-++++++||||||.. +| |.|.+..... ++.++++..|.|-.|..++..+.. ++...|..
T Consensus 25 ~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~-l~~~~~~~ 103 (434)
T PRK11192 25 TAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARE-LAKHTHLD 103 (434)
T ss_pred CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHH-HHccCCcE
Confidence 345667777777888899999999999985 44 3344322111 235799999999999988776543 33444555
Q ss_pred eeEEeecCc------cCCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEcccc
Q psy1907 747 VGYAIRFED------CTSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAH 793 (1320)
Q Consensus 747 VGY~irfe~------~~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~H 793 (1320)
|+.-..... ....+..|+++|.|.|+..+.... .+.++++|||||||
T Consensus 104 v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah 157 (434)
T PRK11192 104 IATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD 157 (434)
T ss_pred EEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH
Confidence 554332221 223467899999999999888766 58899999999999
No 136
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.93 E-value=6.9e-09 Score=126.23 Aligned_cols=121 Identities=20% Similarity=0.213 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHhCCEEEEEcCCCCchhcH--HHHH--HHHccC----CCCCcEEEEecccHHHHHHHHHHHHHHhCCCCC
Q psy1907 673 PFKQDLIDAVRDHQVLIIEGETGSGKTTQ--IPQY--LHEAGF----TKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLG 744 (1320)
Q Consensus 673 ~~~~~il~~i~~~~v~ii~geTGsGKTTq--vPq~--l~e~~~----~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG 744 (1320)
+...+.+..+.+++-+|++++||||||.- +|-+ |+.... ...+.++++..|.|-.|..+++.+ ..++...|
T Consensus 33 ~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~-~~l~~~~~ 111 (423)
T PRK04837 33 PIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADA-EPLAQATG 111 (423)
T ss_pred HHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHH-HHHhccCC
Confidence 34556667777888899999999999985 3432 332211 112357999999999999887653 44555566
Q ss_pred CeeeEEeecCcc------CCCCccEEEEccHHHHHHHhcC-CCCCCccEEEEccccc
Q psy1907 745 CEVGYAIRFEDC------TSERTIIKYMTDGTLHREFLSE-PDLASYSVMIIDEAHP 794 (1320)
Q Consensus 745 ~~VGY~irfe~~------~s~~T~i~y~TdG~Llrel~~d-p~L~~ys~iIiDE~HE 794 (1320)
-.|+.-+..++. ......|+++|.|.|+..+... -.|+++++|||||||.
T Consensus 112 ~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~ 168 (423)
T PRK04837 112 LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADR 168 (423)
T ss_pred ceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHH
Confidence 677765554432 2234689999999999888654 3789999999999994
No 137
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.90 E-value=1.5e-08 Score=125.13 Aligned_cols=122 Identities=21% Similarity=0.165 Sum_probs=84.0
Q ss_pred ChhhHHHHHHHHHhCCEEEEEcCCCCchhcH--HHHH--HHHccCC----CCCcEEEEecccHHHHHHHHHHHHHHhCCC
Q psy1907 671 IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQ--IPQY--LHEAGFT----KDKMKIGCTQPRRVAAMSVSARVAEEMGVK 742 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~v~ii~geTGsGKTTq--vPq~--l~e~~~~----~~~~~I~~tQPRRvAA~svA~rva~e~~~~ 742 (1320)
-+++..+.+..+.+++-+|++++||||||.- +|.+ |++.... .++.++++.-|.|-.|..+++.+. ++...
T Consensus 110 ~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~-~l~~~ 188 (475)
T PRK01297 110 CTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAA-ALTKY 188 (475)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHH-Hhhcc
Confidence 3567778889999999999999999999964 3422 2221110 113468889999999998877664 34444
Q ss_pred CCCeeeEEeecCc-------cCCCCccEEEEccHHHHHHHhc-CCCCCCccEEEEcccc
Q psy1907 743 LGCEVGYAIRFED-------CTSERTIIKYMTDGTLHREFLS-EPDLASYSVMIIDEAH 793 (1320)
Q Consensus 743 lG~~VGY~irfe~-------~~s~~T~i~y~TdG~Llrel~~-dp~L~~ys~iIiDE~H 793 (1320)
+|..|+--+...+ .......|+++|.|+|+..+.. ...|+++++|||||+|
T Consensus 189 ~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah 247 (475)
T PRK01297 189 TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEAD 247 (475)
T ss_pred CCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHH
Confidence 4544432222111 1234578999999999887654 3478999999999999
No 138
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.90 E-value=7.9e-09 Score=130.91 Aligned_cols=110 Identities=22% Similarity=0.294 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHhCCEEEEEcCCCCchhc--HHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEE
Q psy1907 673 PFKQDLIDAVRDHQVLIIEGETGSGKTT--QIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYA 750 (1320)
Q Consensus 673 ~~~~~il~~i~~~~v~ii~geTGsGKTT--qvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~ 750 (1320)
+...+++.++.+++-+++++|||||||. |+|.++.. + .+++.-|.+--+......+.. . |..+++-
T Consensus 28 ~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~------g-~tlVisPl~sL~~dqv~~l~~-~----gi~~~~~ 95 (607)
T PRK11057 28 PGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLD------G-LTLVVSPLISLMKDQVDQLLA-N----GVAAACL 95 (607)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcC------C-CEEEEecHHHHHHHHHHHHHH-c----CCcEEEE
Confidence 4677889999999999999999999999 88977542 2 366777876665555444432 3 3333322
Q ss_pred ee----------cCccCCCCccEEEEccHHHHHH-HhcCCCCCCccEEEEccccc
Q psy1907 751 IR----------FEDCTSERTIIKYMTDGTLHRE-FLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 751 ir----------fe~~~s~~T~i~y~TdG~Llre-l~~dp~L~~ys~iIiDE~HE 794 (1320)
.. ++...+.+.+|+|+|.+.|+.. ++......++++|||||||.
T Consensus 96 ~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~ 150 (607)
T PRK11057 96 NSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHC 150 (607)
T ss_pred cCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccc
Confidence 11 1223445678999999988753 33333455799999999994
No 139
>PTZ00110 helicase; Provisional
Probab=98.85 E-value=2.3e-08 Score=125.10 Aligned_cols=121 Identities=21% Similarity=0.174 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHhCCEEEEEcCCCCchhcH--HHHHHHHc--cC-C-CCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCe
Q psy1907 673 PFKQDLIDAVRDHQVLIIEGETGSGKTTQ--IPQYLHEA--GF-T-KDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCE 746 (1320)
Q Consensus 673 ~~~~~il~~i~~~~v~ii~geTGsGKTTq--vPq~l~e~--~~-~-~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~ 746 (1320)
+...+.+..+.+++-+|++++||||||.. +|.+..-. .. . ..+..+++.-|.|-.|..+.+.+. .++...+-.
T Consensus 155 ~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~-~~~~~~~i~ 233 (545)
T PTZ00110 155 PIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCN-KFGASSKIR 233 (545)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHH-HHhcccCcc
Confidence 33455566677788889999999999985 78664321 11 1 123468889999988887766543 344433333
Q ss_pred eeEEeecCcc------CCCCccEEEEccHHHHHHHhcC-CCCCCccEEEEccccc
Q psy1907 747 VGYAIRFEDC------TSERTIIKYMTDGTLHREFLSE-PDLASYSVMIIDEAHP 794 (1320)
Q Consensus 747 VGY~irfe~~------~s~~T~i~y~TdG~Llrel~~d-p~L~~ys~iIiDE~HE 794 (1320)
+.-....... ......|+++|.|.|+..+... ..|.++++|||||||.
T Consensus 234 ~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~ 288 (545)
T PTZ00110 234 NTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADR 288 (545)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHh
Confidence 2221111111 1224579999999999988765 4789999999999993
No 140
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.83 E-value=2.6e-08 Score=105.90 Aligned_cols=126 Identities=24% Similarity=0.192 Sum_probs=93.6
Q ss_pred CChhhHHHHHHHHHhC-CEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeee
Q psy1907 670 PIYPFKQDLIDAVRDH-QVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVG 748 (1320)
Q Consensus 670 Pi~~~~~~il~~i~~~-~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VG 748 (1320)
+..+.+.+++..+.+. +.++|.|+||||||+.+..++++.......++++++-|++..+...+.++...+....+..+.
T Consensus 8 ~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T smart00487 8 PLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVG 87 (201)
T ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEE
Confidence 3456677888888888 999999999999999999998876554434579999999999999998887766432212222
Q ss_pred EEeecCc------cCCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEcccccc
Q psy1907 749 YAIRFED------CTSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHPK 795 (1320)
Q Consensus 749 Y~irfe~------~~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HER 795 (1320)
+--.... .....+.+.++|.+.+.+.+.... ....+++|||||+|.-
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~ 141 (201)
T smart00487 88 LYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRL 141 (201)
T ss_pred EeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHH
Confidence 1111110 122334899999999999988766 6778999999999964
No 141
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.82 E-value=7.9e-09 Score=105.03 Aligned_cols=102 Identities=25% Similarity=0.437 Sum_probs=73.6
Q ss_pred HhCCEEEEEcCCCCchhcH-HHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecC-ccCCCC
Q psy1907 683 RDHQVLIIEGETGSGKTTQ-IPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFE-DCTSER 760 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTq-vPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe-~~~s~~ 760 (1320)
++.+..+|.-.||||||++ +|+++-|+ +. .+.++++.-|-|+.|-++++.+. |..|.|+...- .....+
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~-i~-~~~rvLvL~PTRvva~em~~aL~-------~~~~~~~t~~~~~~~~g~ 72 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREA-IK-RRLRVLVLAPTRVVAEEMYEALK-------GLPVRFHTNARMRTHFGS 72 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHH-HH-TT--EEEEESSHHHHHHHHHHTT-------TSSEEEESTTSS----SS
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHH-HH-ccCeEEEecccHHHHHHHHHHHh-------cCCcccCceeeeccccCC
Confidence 4567899999999999998 57777654 33 34479999999998877766653 33466665444 234567
Q ss_pred ccEEEEccHHHHHHHhcCCCCCCccEEEEcccc
Q psy1907 761 TIIKYMTDGTLHREFLSEPDLASYSVMIIDEAH 793 (1320)
Q Consensus 761 T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~H 793 (1320)
+.|-.||.+.+.+.+++--.+.+|++||+||+|
T Consensus 73 ~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH 105 (148)
T PF07652_consen 73 SIIDVMCHATYGHFLLNPCRLKNYDVIIMDECH 105 (148)
T ss_dssp SSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT
T ss_pred CcccccccHHHHHHhcCcccccCccEEEEeccc
Confidence 889999999999999885589999999999999
No 142
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.82 E-value=2.1e-08 Score=105.45 Aligned_cols=122 Identities=21% Similarity=0.183 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEee
Q psy1907 673 PFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIR 752 (1320)
Q Consensus 673 ~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~ir 752 (1320)
+...++++.+.++..++|.|+||||||+....+++.........++++..|.+-.+..++.++..-.+. .+-.+..-..
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~ 80 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLHG 80 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEEST
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccc-cccccccccc
Confidence 356778888888888999999999999999888776544433347999999999999999988776655 2333332222
Q ss_pred cCc-------cCCCCccEEEEccHHHHHHHhcC-CCCCCccEEEEcccccc
Q psy1907 753 FED-------CTSERTIIKYMTDGTLHREFLSE-PDLASYSVMIIDEAHPK 795 (1320)
Q Consensus 753 fe~-------~~s~~T~i~y~TdG~Llrel~~d-p~L~~ys~iIiDE~HER 795 (1320)
... ....+..|+++|.++|++.+... ..+.++++|||||+|.-
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l 131 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHL 131 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHH
T ss_pred cccccccccccccccccccccCcchhhccccccccccccceeeccCccccc
Confidence 111 11245889999999999998873 25667999999999965
No 143
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=98.81 E-value=5.4e-08 Score=121.31 Aligned_cols=121 Identities=20% Similarity=0.241 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHhCCEEEEEcCCCCchhc--HHHHHH--HHc---cC-CCCCcEEEEecccHHHHHHHHHHHHHHhCCCCC
Q psy1907 673 PFKQDLIDAVRDHQVLIIEGETGSGKTT--QIPQYL--HEA---GF-TKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLG 744 (1320)
Q Consensus 673 ~~~~~il~~i~~~~v~ii~geTGsGKTT--qvPq~l--~e~---~~-~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG 744 (1320)
+...+.+.++.+++-+|++++||||||. .+|-+. +.. .. ...+..+++.-|.|--|..+...+ ..++..+|
T Consensus 146 piQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~-~~l~~~~~ 224 (518)
T PLN00206 146 PIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQA-KVLGKGLP 224 (518)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHH-HHHhCCCC
Confidence 3455667777788999999999999996 567542 111 11 123457888999998888766554 34444444
Q ss_pred CeeeEEeecCcc------CCCCccEEEEccHHHHHHHhcC-CCCCCccEEEEccccc
Q psy1907 745 CEVGYAIRFEDC------TSERTIIKYMTDGTLHREFLSE-PDLASYSVMIIDEAHP 794 (1320)
Q Consensus 745 ~~VGY~irfe~~------~s~~T~i~y~TdG~Llrel~~d-p~L~~ys~iIiDE~HE 794 (1320)
-.+..-+..+.. ......|+++|.|.|+..+... ..|+++++|||||||.
T Consensus 225 ~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ 281 (518)
T PLN00206 225 FKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDC 281 (518)
T ss_pred ceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHH
Confidence 333322332221 1234679999999999887654 4799999999999993
No 144
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.80 E-value=6.2e-08 Score=118.25 Aligned_cols=98 Identities=13% Similarity=0.087 Sum_probs=84.7
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCcc
Q psy1907 113 LGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNII 192 (1320)
Q Consensus 113 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~ 192 (1320)
..++|||+...++++.++..+.. ++. +..+.|..++.+|..+++.|+.|.+++|+++.|+.-|+|+|+++
T Consensus 283 ~~~~lif~~~~~~a~~i~~~~~~---------~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~ 352 (442)
T COG1061 283 GDKTLIFASDVEHAYEIAKLFLA---------PGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDAD 352 (442)
T ss_pred CCcEEEEeccHHHHHHHHHHhcC---------CCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCc
Confidence 45799999999999999988864 344 88899999999999999999999999999999999999999999
Q ss_pred EEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCC
Q psy1907 193 YVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLS 238 (1320)
Q Consensus 193 ~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~ 238 (1320)
.+|-.. ..-|...+.||.||.=|..+|+
T Consensus 353 ~~i~~~------------------~t~S~~~~~Q~lGR~LR~~~~k 380 (442)
T COG1061 353 VLIILR------------------PTGSRRLFIQRLGRGLRPAEGK 380 (442)
T ss_pred EEEEeC------------------CCCcHHHHHHHhhhhccCCCCC
Confidence 999422 2457889999999999954443
No 145
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.78 E-value=8.2e-08 Score=122.17 Aligned_cols=123 Identities=20% Similarity=0.189 Sum_probs=94.4
Q ss_pred cEEEEecCc--CHHHHHhhcCCCCEEEeCCcccce-eEEE---EcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHH
Q psy1907 52 KLLISSATL--DAQKFSEFFDDAPVFRIPGRRFPV-DIYY---TKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEE 125 (1320)
Q Consensus 52 qlIl~SATl--~~~~f~~~f~~~~vi~i~g~~~pV-~~~y---~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~e 125 (1320)
++-.|+.|. ..+.|.+.+ +-+++.||.. .|+ ..-+ .-....++..+.+..+...|.. +..+|||++|.+.
T Consensus 381 kLsGMTGTa~te~~Ef~~iY-~l~Vv~IPtn-kp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~--g~PVLVgt~Sie~ 456 (896)
T PRK13104 381 KLSGMTGTADTEAYEFQQIY-NLEVVVIPTN-RSMIRKDEADLVYLTQADKFQAIIEDVRECGVR--KQPVLVGTVSIEA 456 (896)
T ss_pred hhccCCCCChhHHHHHHHHh-CCCEEECCCC-CCcceecCCCeEEcCHHHHHHHHHHHHHHHHhC--CCCEEEEeCcHHH
Confidence 566788887 335566666 5667888763 232 1111 1112455677777777777765 4569999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCC
Q psy1907 126 IETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTID 189 (1320)
Q Consensus 126 ie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp 189 (1320)
.+.++.+|.+ .++....|||.+.+.++..+.+.+++|. |+||||+|.||+||.
T Consensus 457 sE~ls~~L~~---------~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~ 509 (896)
T PRK13104 457 SEFLSQLLKK---------ENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIV 509 (896)
T ss_pred HHHHHHHHHH---------cCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCccee
Confidence 9999999987 3888999999999999999999999995 999999999999984
No 146
>KOG0353|consensus
Probab=98.76 E-value=7.4e-08 Score=108.40 Aligned_cols=169 Identities=18% Similarity=0.216 Sum_probs=114.6
Q ss_pred CCCccEEEEeCCCc-----cCcCcch-HHHHHHHHhhcCCCCcEEEEecCcCH---HHHHhhcCC--CCEEEeCCcccce
Q psy1907 16 LASYSVMIIDEAHE-----RTLHTDI-LFGLVKDIVRFRSDLKLLISSATLDA---QKFSEFFDD--APVFRIPGRRFPV 84 (1320)
Q Consensus 16 Ls~~s~iVLDEaHe-----R~l~td~-ll~llk~l~~~r~~~qlIl~SATl~~---~~f~~~f~~--~~vi~i~g~~~pV 84 (1320)
...+..|-|||+|. +...+|. .+++||+ ..++.-+|.+.||-.. +...+.+.- +-.+. .|-..|
T Consensus 213 ~~~~~~iaidevhccsqwghdfr~dy~~l~ilkr---qf~~~~iigltatatn~vl~d~k~il~ie~~~tf~-a~fnr~- 287 (695)
T KOG0353|consen 213 AGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKR---QFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFR-AGFNRP- 287 (695)
T ss_pred cceeEEEeecceeehhhhCcccCcchHHHHHHHH---hCCCCceeeeehhhhcchhhHHHHHHhHHhhheee-cccCCC-
Confidence 56788999999994 3445554 3566654 4566779999999722 222222210 00111 121111
Q ss_pred eEEEE----cCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHH
Q psy1907 85 DIYYT----KAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDM 160 (1320)
Q Consensus 85 ~~~y~----~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~ 160 (1320)
...|. +..+.+.++....+ |...-.+..-||+|-++.++|.++..|..+ ++..-.+|+.|.+++
T Consensus 288 nl~yev~qkp~n~dd~~edi~k~---i~~~f~gqsgiiyc~sq~d~ekva~alkn~---------gi~a~~yha~lep~d 355 (695)
T KOG0353|consen 288 NLKYEVRQKPGNEDDCIEDIAKL---IKGDFAGQSGIIYCFSQKDCEKVAKALKNH---------GIHAGAYHANLEPED 355 (695)
T ss_pred CceeEeeeCCCChHHHHHHHHHH---hccccCCCcceEEEeccccHHHHHHHHHhc---------CccccccccccCccc
Confidence 11221 12233444443332 222222334699999999999999999874 788899999999999
Q ss_pred HHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCc
Q psy1907 161 QTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCK 201 (1320)
Q Consensus 161 r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k 201 (1320)
+.-+-+..-.|.+.|||||-.-..|||-|+|++||+-.+++
T Consensus 356 ks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~k 396 (695)
T KOG0353|consen 356 KSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPK 396 (695)
T ss_pred cccccccccccceEEEEEEeeecccCCCCCeeEEEecccch
Confidence 99999999999999999999999999999999999988855
No 147
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.75 E-value=1.1e-07 Score=117.44 Aligned_cols=109 Identities=18% Similarity=0.196 Sum_probs=72.1
Q ss_pred hHHHHHHHHHhCCEEEEEcCCCCchhc--HHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEe
Q psy1907 674 FKQDLIDAVRDHQVLIIEGETGSGKTT--QIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAI 751 (1320)
Q Consensus 674 ~~~~il~~i~~~~v~ii~geTGsGKTT--qvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~i 751 (1320)
...+.+.++.+++-+++++|||||||. |+|..+. ++ ..++.-|.|--+.....++. .+ |-.+++-.
T Consensus 15 ~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~-~~lVi~P~~~L~~dq~~~l~-~~----gi~~~~l~ 82 (470)
T TIGR00614 15 VQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DG-ITLVISPLISLMEDQVLQLK-AS----GIPATFLN 82 (470)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CC-cEEEEecHHHHHHHHHHHHH-Hc----CCcEEEEe
Confidence 456788888888889999999999997 7886542 22 35667788877666665554 23 33333211
Q ss_pred ecC----------ccCCCCccEEEEccHHHHHHH--hcCC-CCCCccEEEEccccc
Q psy1907 752 RFE----------DCTSERTIIKYMTDGTLHREF--LSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 752 rfe----------~~~s~~T~i~y~TdG~Llrel--~~dp-~L~~ys~iIiDE~HE 794 (1320)
... +....+.+|+|+|.+.+.... +..- .+.+++.|||||||.
T Consensus 83 ~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~ 138 (470)
T TIGR00614 83 SSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHC 138 (470)
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcc
Confidence 111 112345789999999875321 1111 568899999999994
No 148
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.73 E-value=9.4e-08 Score=120.23 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHhCCEEEEEcCCCCchhcH--HHHH--HHHc-cC---CCCCcEEEEecccHHHHHHHHHHHHHHhCCCCC
Q psy1907 673 PFKQDLIDAVRDHQVLIIEGETGSGKTTQ--IPQY--LHEA-GF---TKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLG 744 (1320)
Q Consensus 673 ~~~~~il~~i~~~~v~ii~geTGsGKTTq--vPq~--l~e~-~~---~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG 744 (1320)
+...+.+..+.+++-+|+.++||||||.- +|-+ |... .. ...+.++++.-|.|-.|..+++.+ ..++..+|
T Consensus 34 piQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~-~~l~~~~~ 112 (572)
T PRK04537 34 PIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDA-VKFGADLG 112 (572)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHH-HHHhccCC
Confidence 34556677778888899999999999975 3422 2221 11 111357999999999999998874 45666666
Q ss_pred CeeeEEeecCcc------CCCCccEEEEccHHHHHHHhcCC--CCCCccEEEEccccc
Q psy1907 745 CEVGYAIRFEDC------TSERTIIKYMTDGTLHREFLSEP--DLASYSVMIIDEAHP 794 (1320)
Q Consensus 745 ~~VGY~irfe~~------~s~~T~i~y~TdG~Llrel~~dp--~L~~ys~iIiDE~HE 794 (1320)
-.|+.-+...+. ...+..|+++|.|.|++.+.... .|..+++|||||||.
T Consensus 113 i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~ 170 (572)
T PRK04537 113 LRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADR 170 (572)
T ss_pred ceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHH
Confidence 666655443321 12346799999999999887654 578899999999993
No 149
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.73 E-value=1.3e-07 Score=116.36 Aligned_cols=121 Identities=21% Similarity=0.205 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHhCCEEEEEcCCCCchhcH--HHHH--HHHccCC---CCCcEEEEecccHHHHHHHHHHHHHHhCCCCCC
Q psy1907 673 PFKQDLIDAVRDHQVLIIEGETGSGKTTQ--IPQY--LHEAGFT---KDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGC 745 (1320)
Q Consensus 673 ~~~~~il~~i~~~~v~ii~geTGsGKTTq--vPq~--l~e~~~~---~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~ 745 (1320)
++..+.+..+.+++-+|++++||||||.- +|-+ |...... ....++++..|.|-.|..+.+.+.... ..++-
T Consensus 26 ~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~-~~~~~ 104 (456)
T PRK10590 26 PIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYS-KYLNI 104 (456)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHh-ccCCC
Confidence 45566777888888999999999999975 3422 2221111 112368999999999998888776532 22332
Q ss_pred eeeEEeecCc------cCCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 746 EVGYAIRFED------CTSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 746 ~VGY~irfe~------~~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
.+.--+...+ ....+..|+++|.|.|+..+.... .|+++++|||||||.
T Consensus 105 ~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 105 RSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR 160 (456)
T ss_pred EEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH
Confidence 2211111111 123456899999999999876655 799999999999993
No 150
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.70 E-value=1e-07 Score=121.11 Aligned_cols=121 Identities=25% Similarity=0.305 Sum_probs=91.9
Q ss_pred cEEEEecCcC--HHHHHhhcCCCCEEEeCCccccee------EEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCH
Q psy1907 52 KLLISSATLD--AQKFSEFFDDAPVFRIPGRRFPVD------IYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQ 123 (1320)
Q Consensus 52 qlIl~SATl~--~~~f~~~f~~~~vi~i~g~~~pV~------~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~ 123 (1320)
++..|+.|.. .+.|.+.+ +-+++.||... |+. ..|. ...++..+.+..+...|.. +..+|||++|.
T Consensus 367 kl~GmTGTa~te~~E~~~iY-~l~vv~IPtnk-p~~r~d~~d~i~~--t~~~K~~aI~~~I~~~~~~--grpVLIft~Si 440 (830)
T PRK12904 367 KLAGMTGTADTEAEEFREIY-NLDVVVIPTNR-PMIRIDHPDLIYK--TEKEKFDAVVEDIKERHKK--GQPVLVGTVSI 440 (830)
T ss_pred hhcccCCCcHHHHHHHHHHh-CCCEEEcCCCC-CeeeeeCCCeEEE--CHHHHHHHHHHHHHHHHhc--CCCEEEEeCcH
Confidence 5777888883 34566666 56688887632 332 1222 2345666666666665544 45799999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCC
Q psy1907 124 EEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTID 189 (1320)
Q Consensus 124 ~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp 189 (1320)
+.++.++..|.+. ++....|||. +.+|...+..|..+.-.|+||||+|.||+||+
T Consensus 441 ~~se~Ls~~L~~~---------gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~ 495 (830)
T PRK12904 441 EKSELLSKLLKKA---------GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIK 495 (830)
T ss_pred HHHHHHHHHHHHC---------CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCcc
Confidence 9999999999873 7888999996 88899999999999999999999999999985
No 151
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.69 E-value=2.2e-07 Score=117.93 Aligned_cols=122 Identities=19% Similarity=0.174 Sum_probs=93.2
Q ss_pred cEEEEecCcC--HHHHHhhcCCCCEEEeCCccccee-----EEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHH
Q psy1907 52 KLLISSATLD--AQKFSEFFDDAPVFRIPGRRFPVD-----IYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQE 124 (1320)
Q Consensus 52 qlIl~SATl~--~~~f~~~f~~~~vi~i~g~~~pV~-----~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~ 124 (1320)
++-.|+.|.. ...|.+.+ +-+++.||....-.. ..|. ....+..+.+..+..+|.. +..||||++|.+
T Consensus 386 kL~GMTGTa~te~~Ef~~iY-~l~Vv~IPTnkp~~R~d~~d~iy~--t~~~K~~Aii~ei~~~~~~--GrpVLV~t~sv~ 460 (908)
T PRK13107 386 KLAGMTGTADTEAFEFQHIY-GLDTVVVPTNRPMVRKDMADLVYL--TADEKYQAIIKDIKDCRER--GQPVLVGTVSIE 460 (908)
T ss_pred HhhcccCCChHHHHHHHHHh-CCCEEECCCCCCccceeCCCcEEe--CHHHHHHHHHHHHHHHHHc--CCCEEEEeCcHH
Confidence 5667888873 34455555 566777775322111 1221 2345667777878877765 456999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCC
Q psy1907 125 EIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTID 189 (1320)
Q Consensus 125 eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp 189 (1320)
..+.++.+|.+. ++....|||.+.+.++..+.+.+++|. |+||||+|.||+||.
T Consensus 461 ~se~ls~~L~~~---------gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIk 514 (908)
T PRK13107 461 QSELLARLMVKE---------KIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIV 514 (908)
T ss_pred HHHHHHHHHHHC---------CCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCccee
Confidence 999999999873 788889999999999999999999998 999999999999984
No 152
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.68 E-value=1.5e-07 Score=119.48 Aligned_cols=109 Identities=18% Similarity=0.261 Sum_probs=73.0
Q ss_pred hHHHHHHHHHhCCEEEEEcCCCCchhc--HHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEe
Q psy1907 674 FKQDLIDAVRDHQVLIIEGETGSGKTT--QIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAI 751 (1320)
Q Consensus 674 ~~~~il~~i~~~~v~ii~geTGsGKTT--qvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~i 751 (1320)
...+++.++.+++-+++++|||+|||. |+|-.+. .| .+++.-|.+.-+.....++.. + |..|++--
T Consensus 17 ~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~g-~~lVisPl~sL~~dq~~~l~~-~----gi~~~~~~ 84 (591)
T TIGR01389 17 GQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------KG-LTVVISPLISLMKDQVDQLRA-A----GVAAAYLN 84 (591)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------CC-cEEEEcCCHHHHHHHHHHHHH-c----CCcEEEEe
Confidence 457888899888999999999999998 6776542 22 366678987666555555533 3 44444321
Q ss_pred ec---C-------ccCCCCccEEEEccHHHHHHH-hcCCCCCCccEEEEccccc
Q psy1907 752 RF---E-------DCTSERTIIKYMTDGTLHREF-LSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 752 rf---e-------~~~s~~T~i~y~TdG~Llrel-~~dp~L~~ys~iIiDE~HE 794 (1320)
.. + ...+....|+|+|.+.|.... ...-...+.++|||||||.
T Consensus 85 s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~ 138 (591)
T TIGR01389 85 STLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHC 138 (591)
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcc
Confidence 11 1 112345789999999886432 2222456899999999994
No 153
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.65 E-value=4.5e-07 Score=107.54 Aligned_cols=119 Identities=24% Similarity=0.226 Sum_probs=78.9
Q ss_pred ccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHH-ccCCC---CCcEEEEecccHHHHHHHHHHHHHHhCCC
Q psy1907 667 KSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHE-AGFTK---DKMKIGCTQPRRVAAMSVSARVAEEMGVK 742 (1320)
Q Consensus 667 ~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e-~~~~~---~~~~I~~tQPRRvAA~svA~rva~e~~~~ 742 (1320)
.-|||-.. .+-..+-+...++|+.+|+||||-. -| +|+.+ +|+|.+..-|--.-|-.-..-.-+ +-.+
T Consensus 216 eLlPVQ~l--aVe~GLLeG~nllVVSaTasGKTLI-----gElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~-rYs~ 287 (830)
T COG1202 216 ELLPVQVL--AVEAGLLEGENLLVVSATASGKTLI-----GELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKE-RYSK 287 (830)
T ss_pred eecchhhh--hhhhccccCCceEEEeccCCCcchH-----HHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHH-Hhhc
Confidence 34777432 3445667888999999999999943 33 34432 355667777743333332222333 3367
Q ss_pred CCCeeeEEeec-----C-----ccCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEcccc
Q psy1907 743 LGCEVGYAIRF-----E-----DCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAH 793 (1320)
Q Consensus 743 lG~~VGY~irf-----e-----~~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~H 793 (1320)
||-.|...|.. . -.++++..|+..|..=+--.|.+...|.++++|||||+|
T Consensus 288 LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiH 348 (830)
T COG1202 288 LGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIH 348 (830)
T ss_pred ccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeee
Confidence 77766444432 2 245778899999988777777777899999999999999
No 154
>KOG0953|consensus
Probab=98.65 E-value=1.7e-07 Score=111.01 Aligned_cols=124 Identities=19% Similarity=0.244 Sum_probs=97.3
Q ss_pred HhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCC--CCCCeEEEEeCcccccC
Q psy1907 108 HATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPT--PPNARKVVLATNIAETS 185 (1320)
Q Consensus 108 ~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~--~~g~~kVlvATdIAe~g 185 (1320)
..+-.+||++|=++ +.+|-.+...++++ .+..+..+||+||++.|..--..| +++..+|+||||....|
T Consensus 352 l~nlk~GDCvV~FS-kk~I~~~k~kIE~~--------g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMG 422 (700)
T KOG0953|consen 352 LSNLKPGDCVVAFS-KKDIFTVKKKIEKA--------GNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMG 422 (700)
T ss_pred hccCCCCCeEEEee-hhhHHHHHHHHHHh--------cCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccc
Confidence 34556899888765 66788888888875 355689999999999875444444 56899999999999999
Q ss_pred CCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHH
Q psy1907 186 LTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 186 ldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~ 250 (1320)
+++ +|+=||=+.+.| |+ | -.+.+++.+++.|-+|||||.|.+..-|....+..++
T Consensus 423 LNL-~IrRiiF~sl~K---ys---g---~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 423 LNL-NIRRIIFYSLIK---YS---G---RETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred ccc-ceeEEEEeeccc---CC---c---ccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 999 677777666644 33 3 3467999999999999999999887778888777654
No 155
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.57 E-value=2.9e-07 Score=100.22 Aligned_cols=123 Identities=20% Similarity=0.163 Sum_probs=86.0
Q ss_pred ChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCC---CCcEEEEecccHHHHHHHHHHHHHHhCCCCCCee
Q psy1907 671 IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTK---DKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEV 747 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~---~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~V 747 (1320)
.+.+..+.+..+.+++.++|+++||+|||......+++..... .+.++++..|.+--+...++.+.. ++...|..|
T Consensus 22 ~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~-~~~~~~~~~ 100 (203)
T cd00268 22 PTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARK-LGKHTNLKV 100 (203)
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHH-HhccCCceE
Confidence 4667777888888899999999999999987554544433332 345788888999988888776644 332233333
Q ss_pred eEEeecCc------cCCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 748 GYAIRFED------CTSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 748 GY~irfe~------~~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
+.-....+ ....+..|.++|.+.|++.+.+.+ .+.+.++||+||+|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~ 154 (203)
T cd00268 101 VVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADR 154 (203)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHH
Confidence 32111111 112366899999999999887665 678899999999996
No 156
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.56 E-value=7.1e-07 Score=114.34 Aligned_cols=97 Identities=19% Similarity=0.117 Sum_probs=71.6
Q ss_pred EEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCC--------------------------CCC
Q psy1907 117 LVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLP--------------------------TPP 170 (1320)
Q Consensus 117 LVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~--------------------------~~~ 170 (1320)
||=+++...+-.++..|.... ......+.++.+||..+...|..+.+. ...
T Consensus 760 liR~anI~p~V~~A~~L~~~~---~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~ 836 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALL---AEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPAL 836 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhc---cccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhccccc
Confidence 666777777777777776542 233356789999999988777655422 113
Q ss_pred CCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCC
Q psy1907 171 NARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPL 237 (1320)
Q Consensus 171 g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g 237 (1320)
+...|||||.|.|.|+|++ .+++| +.+.+..+.+||+||..|.+..
T Consensus 837 ~~~~i~v~Tqv~E~g~D~d-fd~~~--------------------~~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHD-YDWAI--------------------ADPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred CCCeEEEEeeeEEEEeccc-CCeee--------------------eccCcHHHHHHHhhcccccccC
Confidence 5789999999999999995 44444 4577889999999999998765
No 157
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=98.51 E-value=1.2e-07 Score=112.71 Aligned_cols=108 Identities=22% Similarity=0.184 Sum_probs=76.1
Q ss_pred EEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeee------EEeec-----Cc
Q psy1907 687 VLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVG------YAIRF-----ED 755 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VG------Y~irf-----e~ 755 (1320)
.++|+||||||||+...+++++.-....+.+|+++.|+|..|...++++..-+|..+|..-| +.... +.
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 47999999999999999888765322334579999999999999999999877765542211 11100 00
Q ss_pred c---------CCCCccEEEEccHHHHHHHhcCC-------CCCCccEEEEccccc
Q psy1907 756 C---------TSERTIIKYMTDGTLHREFLSEP-------DLASYSVMIIDEAHP 794 (1320)
Q Consensus 756 ~---------~s~~T~i~y~TdG~Llrel~~dp-------~L~~ys~iIiDE~HE 794 (1320)
. ......|+++|-+.++..+.... ....+++|||||+|.
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~ 135 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHF 135 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCC
Confidence 0 01235699999999998877621 112348999999995
No 158
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=98.46 E-value=1.3e-06 Score=113.38 Aligned_cols=110 Identities=17% Similarity=0.192 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHhCCEEEEEcCCCCchhc--HHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEE
Q psy1907 673 PFKQDLIDAVRDHQVLIIEGETGSGKTT--QIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYA 750 (1320)
Q Consensus 673 ~~~~~il~~i~~~~v~ii~geTGsGKTT--qvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~ 750 (1320)
+...+++.++..+.-++++.|||+|||. |+|-++. .+ ..+|.-|-+-.+.. .|..... .|-.+.+-
T Consensus 463 p~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~G-iTLVISPLiSLmqD---QV~~L~~--~GI~Aa~L 530 (1195)
T PLN03137 463 PNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PG-ITLVISPLVSLIQD---QIMNLLQ--ANIPAASL 530 (1195)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CC-cEEEEeCHHHHHHH---HHHHHHh--CCCeEEEE
Confidence 3567889999999999999999999998 7887653 22 35666675544331 2332221 23333332
Q ss_pred eecC----------ccCC--CCccEEEEccHHHH------HHHhcCCCCCCccEEEEccccc
Q psy1907 751 IRFE----------DCTS--ERTIIKYMTDGTLH------REFLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 751 irfe----------~~~s--~~T~i~y~TdG~Ll------rel~~dp~L~~ys~iIiDE~HE 794 (1320)
...- ...+ .+.+|+|+|.|.|. +.+..-.....++.|||||||.
T Consensus 531 ~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHc 592 (1195)
T PLN03137 531 SAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHC 592 (1195)
T ss_pred ECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchh
Confidence 2111 1111 46789999999874 3332222345589999999994
No 159
>KOG0949|consensus
Probab=98.29 E-value=7.8e-06 Score=102.15 Aligned_cols=89 Identities=12% Similarity=0.008 Sum_probs=68.3
Q ss_pred EEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHh
Q psy1907 149 ILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRA 228 (1320)
Q Consensus 149 v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~ 228 (1320)
+..+|++|...+|..+.--|+.|...|++||..++.||+.|--++|.- .++|. .+.-.|.|++
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~--------------gDsLQ---L~plny~Qma 1027 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFA--------------GDSLQ---LDPLNYKQMA 1027 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEe--------------ccccc---cCchhHHhhh
Confidence 455899999999999999999999999999999999999998777662 22333 4557899999
Q ss_pred hhcCCCCCCCCce-EEEEecCHHHHhhc
Q psy1907 229 GVITGFNPLSDFR-GCAHVLGEEVLRGC 255 (1320)
Q Consensus 229 GRAGR~g~g~~fg-~~~~L~~~~~~~~l 255 (1320)
|||||.|=+ ..| +.|.-++.+....+
T Consensus 1028 GRAGRRGFD-~lGnV~FmgiP~~kv~rL 1054 (1330)
T KOG0949|consen 1028 GRAGRRGFD-TLGNVVFMGIPRQKVQRL 1054 (1330)
T ss_pred ccccccccc-cccceEEEeCcHHHHHHH
Confidence 999999853 223 44444555544444
No 160
>KOG0390|consensus
Probab=98.18 E-value=1.2e-05 Score=101.43 Aligned_cols=168 Identities=11% Similarity=0.063 Sum_probs=114.7
Q ss_pred EEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCC--CCCC-eEEEEeCcccccCCCCCCccE
Q psy1907 117 LVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPT--PPNA-RKVVLATNIAETSLTIDNIIY 193 (1320)
Q Consensus 117 LVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~--~~g~-~kVlvATdIAe~gldIp~I~~ 193 (1320)
.|.+........+.+.+.+. .+..++-|||.|+..+|+++++.| +.+. .-.+++|-...-||++-|..-
T Consensus 598 ~v~Isny~~tldl~e~~~~~--------~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsR 669 (776)
T KOG0390|consen 598 SVLISNYTQTLDLFEQLCRW--------RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASR 669 (776)
T ss_pred EEEeccHHHHHHHHHHHHhh--------cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccce
Confidence 33444444444444444332 388999999999999999999988 3344 445667888889999888877
Q ss_pred EEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHHHhhcccccCCccccCCcchhhh
Q psy1907 194 VIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEVLRGCAHVLGEEVLRPEVSQPFR 273 (1320)
Q Consensus 194 VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~~~l~~~~~pei~~~~l~~~~L 273 (1320)
||=++. .+||.. =.|=.+||-|-|-.+. -..|+|.+....+. .++
T Consensus 670 lil~D~----dWNPa~--------------d~QAmaR~~RdGQKk~-v~iYrLlatGtiEE-------k~~--------- 714 (776)
T KOG0390|consen 670 LILFDP----DWNPAV--------------DQQAMARAWRDGQKKP-VYIYRLLATGTIEE-------KIY--------- 714 (776)
T ss_pred EEEeCC----CCCchh--------------HHHHHHHhccCCCcce-EEEEEeecCCCchH-------HHH---------
Confidence 774432 344433 2444555555544321 14566655331110 000
Q ss_pred hhccccccccccccccccccceecccccccccchhhhhhcCCChhhhhhhccccccccccccccccCchhhhhhcccccc
Q psy1907 274 SFGYLGVMQDCRYIGTYLVGFIWHWKNHYIQDQTLVTFMLTHLPTTYIKRKSSEYKVGNGEDSFCVSPLYNLTIQSSSFQ 353 (1320)
Q Consensus 274 ~~~~l~~~~~~~~~~~~~~~~il~~~~l~~~d~~~f~~~~~p~~~~~~~~~~~L~~lG~~~~~~~v~p~~~~~l~~~~~~ 353 (1320)
++
T Consensus 715 --------qr---------------------------------------------------------------------- 716 (776)
T KOG0390|consen 715 --------QR---------------------------------------------------------------------- 716 (776)
T ss_pred --------HH----------------------------------------------------------------------
Confidence 00
Q ss_pred hhHHHHHhhccccccccceeeeccCCCCCCcccccCCCCccccccccccCCcccccccCCCCcCCCCCCCCCCcccc
Q psy1907 354 SITIQCFASLQLHHPVIQLFTILPSSSTSSRLFTTLPSSLAAVPHHIQRQSPAQSYHRMTPGCTDRRTQSPCPSCLK 430 (1320)
Q Consensus 354 ~l~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (1320)
=++...||+|+.+++.++++||+.+.++++|+.-.++..|+|....|++|.-
T Consensus 717 -------------------------q~~K~~lS~~v~~~~~~~~~~~~~~~~~~lf~~~~~~~~e~~~~~~~~~~~~ 768 (776)
T KOG0390|consen 717 -------------------------QTHKEGLSSMVFDEEEDVEKHFFTEDLKTLFDLELDTIVETHKLKKSKDCLL 768 (776)
T ss_pred -------------------------HHHhhhhhheEEecccccccccchHHHHHHHhhhccccccchhhhhhHHHhh
Confidence 0246678999999999999999999999999999999999999999999975
No 161
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.15 E-value=4.4e-05 Score=90.91 Aligned_cols=161 Identities=17% Similarity=0.080 Sum_probs=117.6
Q ss_pred CcEEEEecCcCHHHHHhhcCCC--CEEEeCCcccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHH
Q psy1907 51 LKLLISSATLDAQKFSEFFDDA--PVFRIPGRRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIET 128 (1320)
Q Consensus 51 ~qlIl~SATl~~~~f~~~f~~~--~vi~i~g~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~ 128 (1320)
.|+|..|||.....+..-=++. .++.-.|-.-|. ....|...-+++++.-+..-... ...+||-+-|+.-+|.
T Consensus 387 ~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLlDP~---ievRp~~~QvdDL~~EI~~r~~~--~eRvLVTtLTKkmAEd 461 (663)
T COG0556 387 PQTIYVSATPGDYELEQSGGNVVEQIIRPTGLLDPE---IEVRPTKGQVDDLLSEIRKRVAK--NERVLVTTLTKKMAED 461 (663)
T ss_pred CCEEEEECCCChHHHHhccCceeEEeecCCCCCCCc---eeeecCCCcHHHHHHHHHHHHhc--CCeEEEEeehHHHHHH
Confidence 6899999999665554421111 022212333332 11234444556555554443222 4689999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCC
Q psy1907 129 CNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSR 208 (1320)
Q Consensus 129 l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~ 208 (1320)
+.+.|.+. ++.+.-+|+++..-+|..++...+.|...|||--|++--|||+|.|..|.=.+-.|.-.
T Consensus 462 LT~Yl~e~---------gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGF---- 528 (663)
T COG0556 462 LTEYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGF---- 528 (663)
T ss_pred HHHHHHhc---------CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCcccc----
Confidence 99999984 89999999999999999999999999999999999999999999999987433322211
Q ss_pred CCccccceeccCHhhHHHHhhhcCCCCCCC
Q psy1907 209 TGMESLTVVPISKASANQRAGVITGFNPLS 238 (1320)
Q Consensus 209 ~g~~~l~~~piSk~s~~QR~GRAGR~g~g~ 238 (1320)
.=|-.+.+|=+|||.|.-.|+
T Consensus 529 ---------LRse~SLIQtIGRAARN~~Gk 549 (663)
T COG0556 529 ---------LRSERSLIQTIGRAARNVNGK 549 (663)
T ss_pred ---------ccccchHHHHHHHHhhccCCe
Confidence 235578999999999999984
No 162
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.08 E-value=7.5e-05 Score=95.93 Aligned_cols=113 Identities=10% Similarity=-0.019 Sum_probs=80.4
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHH---------------------HHHHHcCCCCC-
Q psy1907 113 LGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTD---------------------MQTKIFLPTPP- 170 (1320)
Q Consensus 113 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~---------------------~r~~i~~~~~~- 170 (1320)
+++.+||+.+++++..+.+.|.+..+.. .+...+.++++-..+ ....+.+.|+.
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~----~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~ 589 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEK----FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE 589 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccc----cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC
Confidence 5899999999999999998887653221 112344444433222 11245556644
Q ss_pred CCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCC-CCCCCCceEEEEecC
Q psy1907 171 NARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITG-FNPLSDFRGCAHVLG 248 (1320)
Q Consensus 171 g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR-~g~g~~fg~~~~L~~ 248 (1320)
+..+|||.+|.+-+|+|.|.+..++= ..|+.-..++|-.||+-| ..+||.+|..+-...
T Consensus 590 ~~~~ilIVvdmllTGFDaP~l~tLyl-------------------dKplk~h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 590 ENPKLLIVVDMLLTGFDAPILNTLYL-------------------DKPLKYHGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred CCceEEEEEcccccccCCCccceEEE-------------------eccccccHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 68899999999999999999987762 124444568999999999 588998887776655
No 163
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.00 E-value=5e-05 Score=99.81 Aligned_cols=102 Identities=20% Similarity=0.226 Sum_probs=69.1
Q ss_pred CEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCcc---------
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDC--------- 756 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~--------- 756 (1320)
.-.+|+|+||||||.-.=..++.+- . .++.+++.-|.++-|..+++.+.+-++ ..|-.|+.-.++-..
T Consensus 473 ~d~Ll~adTGsGKT~val~a~l~al-~-~g~qvlvLvPT~~LA~Q~~~~f~~~~~-~~~i~v~~Lsg~~~~~e~~~~~~~ 549 (926)
T TIGR00580 473 MDRLVCGDVGFGKTEVAMRAAFKAV-L-DGKQVAVLVPTTLLAQQHFETFKERFA-NFPVTIELLSRFRSAKEQNEILKE 549 (926)
T ss_pred CCEEEECCCCccHHHHHHHHHHHHH-H-hCCeEEEEeCcHHHHHHHHHHHHHHhc-cCCcEEEEEeccccHHHHHHHHHH
Confidence 4579999999999965422222221 1 234799999999999999988876543 345556544444221
Q ss_pred -CCCCccEEEEccHHHHHHHhcCCCCCCccEEEEccccc
Q psy1907 757 -TSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 757 -~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HE 794 (1320)
...+..|++.|..+| ..+-.+.+.++|||||+|.
T Consensus 550 l~~g~~dIVIGTp~ll----~~~v~f~~L~llVIDEahr 584 (926)
T TIGR00580 550 LASGKIDILIGTHKLL----QKDVKFKDLGLLIIDEEQR 584 (926)
T ss_pred HHcCCceEEEchHHHh----hCCCCcccCCEEEeecccc
Confidence 122467999998543 3455788999999999994
No 164
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.00 E-value=4.5e-05 Score=95.39 Aligned_cols=102 Identities=14% Similarity=0.209 Sum_probs=73.9
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHH-HHHcCCCCCCCeEEEEeCcccccCCCCCCc
Q psy1907 113 LGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQ-TKIFLPTPPNARKVVLATNIAETSLTIDNI 191 (1320)
Q Consensus 113 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r-~~i~~~~~~g~~kVlvATdIAe~gldIp~I 191 (1320)
.|+.|||+.+..+++.+...+.+..+. ..+--+..+-|.-.+.++ ...|.. ++.-++|.++-+.+.+|||+|.|
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype----~~~~~a~~IT~d~~~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev 500 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPE----YNGRYAMKITGDAEQAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEV 500 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCcc----ccCceEEEEeccchhhHHHHHHHHh-cCCCCceEEehhhhhcCCCchhe
Confidence 578999999999999999999876544 222334445554333332 222322 45668999999999999999999
Q ss_pred cEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCC
Q psy1907 192 IYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPL 237 (1320)
Q Consensus 192 ~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g 237 (1320)
..+|=.-. =-|+.-+.|+.||.=|.++.
T Consensus 501 ~nlVF~r~------------------VrSktkF~QMvGRGTRl~~~ 528 (875)
T COG4096 501 VNLVFDRK------------------VRSKTKFKQMVGRGTRLCPD 528 (875)
T ss_pred eeeeehhh------------------hhhHHHHHHHhcCccccCcc
Confidence 88883221 23778899999999998774
No 165
>PHA02558 uvsW UvsW helicase; Provisional
Probab=97.97 E-value=3e-05 Score=96.51 Aligned_cols=119 Identities=11% Similarity=-0.007 Sum_probs=75.7
Q ss_pred ChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEE
Q psy1907 671 IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYA 750 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~ 750 (1320)
..++..+.+..+.++.-.|++++||||||....... .......+.+++|..|++..+...++++.+-.... ...++.
T Consensus 115 ~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~-~~~~~~- 191 (501)
T PHA02558 115 PHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFP-REAMHK- 191 (501)
T ss_pred CCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHhcCCCeEEEEECcHHHHHHHHHHHHHhcccc-ccceeE-
Confidence 344455545455556667899999999998665322 11111223379999999999999988886532222 112211
Q ss_pred eecCccCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEccccc
Q psy1907 751 IRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 751 irfe~~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HE 794 (1320)
+...........|.++|-+.|.+.. ..++.+|++||+||+|.
T Consensus 192 i~~g~~~~~~~~I~VaT~qsl~~~~--~~~~~~~~~iIvDEaH~ 233 (501)
T PHA02558 192 IYSGTAKDTDAPIVVSTWQSAVKQP--KEWFDQFGMVIVDECHL 233 (501)
T ss_pred EecCcccCCCCCEEEeeHHHHhhch--hhhccccCEEEEEchhc
Confidence 1111111234679999999987653 23688999999999995
No 166
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=97.96 E-value=3.8e-05 Score=98.96 Aligned_cols=101 Identities=20% Similarity=0.220 Sum_probs=72.6
Q ss_pred EEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCc----------c
Q psy1907 687 VLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFED----------C 756 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~----------~ 756 (1320)
.++++|+||||||.-.-..++... ..|.++++.-|.|+-|..++..+.+-. ..+|-.|+.-..... .
T Consensus 284 ~~Ll~~~TGSGKT~va~~~il~~~--~~g~q~lilaPT~~LA~Q~~~~l~~l~-~~~~i~v~ll~G~~~~~~r~~~~~~l 360 (681)
T PRK10917 284 NRLLQGDVGSGKTVVAALAALAAI--EAGYQAALMAPTEILAEQHYENLKKLL-EPLGIRVALLTGSLKGKERREILEAI 360 (681)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEeccHHHHHHHHHHHHHHH-hhcCcEEEEEcCCCCHHHHHHHHHHH
Confidence 689999999999976433333321 134568999999999999999887543 445666776555443 1
Q ss_pred CCCCccEEEEccHHHHHHHhcCCCCCCccEEEEccccc
Q psy1907 757 TSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 757 ~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HE 794 (1320)
.+.+..|+++|.|.+.. .-.+.+.++|||||+|.
T Consensus 361 ~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 361 ASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQHR 394 (681)
T ss_pred hCCCCCEEEchHHHhcc----cchhcccceEEEechhh
Confidence 23467899999987632 33688999999999994
No 167
>PRK13767 ATP-dependent helicase; Provisional
Probab=97.95 E-value=2.4e-05 Score=103.29 Aligned_cols=121 Identities=27% Similarity=0.320 Sum_probs=79.5
Q ss_pred hhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHH----HccCC---CCCcEEEEecccHHHHHHHHHHH---------
Q psy1907 672 YPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLH----EAGFT---KDKMKIGCTQPRRVAAMSVSARV--------- 735 (1320)
Q Consensus 672 ~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~----e~~~~---~~~~~I~~tQPRRvAA~svA~rv--------- 735 (1320)
++...+.+..+.+++.++|++|||||||.-.-..++ ..+.. .++..+++.-|-|.-|..+..++
T Consensus 34 tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~ 113 (876)
T PRK13767 34 TPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIRE 113 (876)
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777888899999999999999986433232 21111 22445777779999888877653
Q ss_pred -HHHhCCCCCCeeeEEeecCccCC--------CCccEEEEccHHHHHHHhcCC----CCCCccEEEEccccc
Q psy1907 736 -AEEMGVKLGCEVGYAIRFEDCTS--------ERTIIKYMTDGTLHREFLSEP----DLASYSVMIIDEAHP 794 (1320)
Q Consensus 736 -a~e~~~~lG~~VGY~irfe~~~s--------~~T~i~y~TdG~Llrel~~dp----~L~~ys~iIiDE~HE 794 (1320)
+.++|..++ .+...++.-+... ....|+++|.+.|...+ ..+ .|.++.+|||||+|+
T Consensus 114 ~~~~~g~~~~-~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll-~~~~~~~~l~~l~~VVIDE~H~ 183 (876)
T PRK13767 114 IAKERGEELP-EIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILL-NSPKFREKLRTVKWVIVDEIHS 183 (876)
T ss_pred HHHhcCCCcC-CeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHh-cChhHHHHHhcCCEEEEechhh
Confidence 333454442 2233344433221 23579999999986444 444 478999999999995
No 168
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.92 E-value=2.3e-05 Score=83.13 Aligned_cols=104 Identities=19% Similarity=0.165 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeee----------------
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVG---------------- 748 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VG---------------- 748 (1320)
+..++|.|+||||||-.+=.++.+..- +++++-|+...+-.....+- ..+.......+
T Consensus 25 ~~~~ll~~~tGsGKT~~~~~~~~~l~~-----~~l~~~p~~~l~~Q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (184)
T PF04851_consen 25 ERRVLLNAPTGSGKTIIALALILELAR-----KVLIVAPNISLLEQWYDEFD-DFGSEKYNFFEKSIKPAYDSKEFISIQ 98 (184)
T ss_dssp CSEEEEEESTTSSHHHHHHHHHHHHHC-----EEEEEESSHHHHHHHHHHHH-HHSTTSEEEEE--GGGCCE-SEEETTT
T ss_pred CCCEEEEECCCCCcChhhhhhhhcccc-----ceeEecCHHHHHHHHHHHHH-Hhhhhhhhhcccccccccccccccccc
Confidence 699999999999999887766655432 57777799765555555551 11211111100
Q ss_pred -EEeecCccCCCCccEEEEccHHHHHHHhcCC------------CCCCccEEEEccccc
Q psy1907 749 -YAIRFEDCTSERTIIKYMTDGTLHREFLSEP------------DLASYSVMIIDEAHP 794 (1320)
Q Consensus 749 -Y~irfe~~~s~~T~i~y~TdG~Llrel~~dp------------~L~~ys~iIiDE~HE 794 (1320)
..............+.+.|...|........ ....+++||+||+|.
T Consensus 99 ~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~ 157 (184)
T PF04851_consen 99 DDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHH 157 (184)
T ss_dssp TEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGC
T ss_pred cccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhh
Confidence 0011111223467799999999988765321 345789999999995
No 169
>KOG0354|consensus
Probab=97.91 E-value=4.7e-05 Score=95.32 Aligned_cols=125 Identities=20% Similarity=0.191 Sum_probs=80.7
Q ss_pred ccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCe
Q psy1907 667 KSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCE 746 (1320)
Q Consensus 667 ~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~ 746 (1320)
..||.-.|..+|.+--. ...+||+.|||||||-..--..++.--...++||+.+-|+|--...-.++.. -+|.. .+
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~-~~~~~--~~ 134 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFS-IYLIP--YS 134 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHh-hccCc--cc
Confidence 46788888889887555 8999999999999986544434432212233579999999876544332222 12211 11
Q ss_pred eeEEeecCccCCC------CccEEEEccHHHHHHHhcC--CCCCCccEEEEcccccc
Q psy1907 747 VGYAIRFEDCTSE------RTIIKYMTDGTLHREFLSE--PDLASYSVMIIDEAHPK 795 (1320)
Q Consensus 747 VGY~irfe~~~s~------~T~i~y~TdG~Llrel~~d--p~L~~ys~iIiDE~HER 795 (1320)
|--....+..++. ..++.|||.-+|..-|.+. +.|+.+++|||||+|.-
T Consensus 135 ~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra 191 (746)
T KOG0354|consen 135 VTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRT 191 (746)
T ss_pred ceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccc
Confidence 1111111111111 4689999999999988752 24899999999999954
No 170
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=97.90 E-value=3.6e-05 Score=91.81 Aligned_cols=59 Identities=15% Similarity=0.190 Sum_probs=38.6
Q ss_pred HHHHHHHHhC--CEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHh
Q psy1907 676 QDLIDAVRDH--QVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEM 739 (1320)
Q Consensus 676 ~~il~~i~~~--~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~ 739 (1320)
.+.++++.++ ++++|+++||||||...=..++.. .+ +.++.-|-+..|-..++++.+-.
T Consensus 3 ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~----~~-~~~~~~P~~aL~~~~~~~~~~~~ 63 (357)
T TIGR03158 3 VATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG----EN-DTIALYPTNALIEDQTEAIKEFV 63 (357)
T ss_pred HHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeChHHHHHHHHHHHHHHH
Confidence 3556666544 479999999999997542222321 12 35666699988888777765543
No 171
>KOG0952|consensus
Probab=97.88 E-value=0.0003 Score=89.49 Aligned_cols=111 Identities=24% Similarity=0.325 Sum_probs=71.9
Q ss_pred HHHhCCEEEEEcCCCCchhcHHHHHHHHc-------c-CCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEee
Q psy1907 681 AVRDHQVLIIEGETGSGKTTQIPQYLHEA-------G-FTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIR 752 (1320)
Q Consensus 681 ~i~~~~v~ii~geTGsGKTTqvPq~l~e~-------~-~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~ir 752 (1320)
+-+.|...+|++|||||||-..-.-++.. + ...++-||+..-|-+.-|..++....+-++ .+|..|+-=.
T Consensus 122 aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~-~~gi~v~ELT- 199 (1230)
T KOG0952|consen 122 AYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLA-PLGISVRELT- 199 (1230)
T ss_pred hhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcc-cccceEEEec-
Confidence 56789999999999999998765544421 1 112345788888977766666655555433 3455555322
Q ss_pred cCccCC----CCccEEEEccHH---HHHHHhcCC-CCCCccEEEEcccc
Q psy1907 753 FEDCTS----ERTIIKYMTDGT---LHREFLSEP-DLASYSVMIIDEAH 793 (1320)
Q Consensus 753 fe~~~s----~~T~i~y~TdG~---Llrel~~dp-~L~~ys~iIiDE~H 793 (1320)
.|...+ .+|.|+..|..- +-|.-..|. ..+.+..|||||+|
T Consensus 200 GD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVH 248 (1230)
T KOG0952|consen 200 GDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVH 248 (1230)
T ss_pred CcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeeh
Confidence 222222 268899888763 445544454 45678999999999
No 172
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.87 E-value=0.00025 Score=90.15 Aligned_cols=151 Identities=21% Similarity=0.174 Sum_probs=96.9
Q ss_pred cEEEEecCcC--HHHHHhhcCCCCEEEeCCccccee------EEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCH
Q psy1907 52 KLLISSATLD--AQKFSEFFDDAPVFRIPGRRFPVD------IYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQ 123 (1320)
Q Consensus 52 qlIl~SATl~--~~~f~~~f~~~~vi~i~g~~~pV~------~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~ 123 (1320)
++-.|+.|.. .+.|.+.+ +-+++.||.. .|+. ..|. ....++.+.+..+...|.. +..|||.+.+.
T Consensus 363 kLsGMTGTA~te~~Ef~~iY-~l~Vv~IPTn-kP~~R~D~~d~iy~--t~~~K~~Aii~ei~~~~~~--gqPVLVgT~SI 436 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFIDIY-NMRVNVVPTN-KPVIRKDEPDSIFG--TKHAKWKAVVKEVKRVHKK--GQPILIGTAQV 436 (925)
T ss_pred hhhccCCCCHHHHHHHHHHh-CCCEEECCCC-CCeeeeeCCCcEEE--cHHHHHHHHHHHHHHHHhc--CCCEEEEeCcH
Confidence 5667888873 23455555 5667777763 2322 1222 2345567777777777754 45699999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCcc--------EEE
Q psy1907 124 EEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNII--------YVI 195 (1320)
Q Consensus 124 ~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~--------~VI 195 (1320)
+..|.++.+|.+. ++..-.|++.-...+-.-|-+.-++| .|.||||.|.||-||.--. |||
T Consensus 437 e~SE~ls~~L~~~---------gi~h~vLNAk~~e~EA~IIa~AG~~G--aVTIATNMAGRGTDI~Lg~~V~~~GGLhVI 505 (925)
T PRK12903 437 EDSETLHELLLEA---------NIPHTVLNAKQNAREAEIIAKAGQKG--AITIATNMAGRGTDIKLSKEVLELGGLYVL 505 (925)
T ss_pred HHHHHHHHHHHHC---------CCCceeecccchhhHHHHHHhCCCCC--eEEEecccccCCcCccCchhHHHcCCcEEE
Confidence 9999999999873 55555666653333322232233334 5889999999999985222 666
Q ss_pred cCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCC-C
Q psy1907 196 DPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNP-L 237 (1320)
Q Consensus 196 D~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~-g 237 (1320)
-+.. +-|.--=.|-.|||||.|. |
T Consensus 506 gTer------------------heSrRIDnQLrGRaGRQGDpG 530 (925)
T PRK12903 506 GTDK------------------AESRRIDNQLRGRSGRQGDVG 530 (925)
T ss_pred eccc------------------CchHHHHHHHhcccccCCCCC
Confidence 5433 2333334699999999985 5
No 173
>PRK09401 reverse gyrase; Reviewed
Probab=97.85 E-value=0.00014 Score=98.01 Aligned_cols=118 Identities=21% Similarity=0.223 Sum_probs=81.2
Q ss_pred hhhHHHHHHHHHhCCEEEEEcCCCCchhcHH-HHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEE
Q psy1907 672 YPFKQDLIDAVRDHQVLIIEGETGSGKTTQI-PQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYA 750 (1320)
Q Consensus 672 ~~~~~~il~~i~~~~v~ii~geTGsGKTTqv-Pq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~ 750 (1320)
+++..+.+..+..++-++++++||||||+-. |..++-. ..+.++++.-|.|--|..+++++.. ++...|..++..
T Consensus 82 t~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~---~~g~~alIL~PTreLa~Qi~~~l~~-l~~~~~~~~~~~ 157 (1176)
T PRK09401 82 WSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLA---KKGKKSYIIFPTRLLVEQVVEKLEK-FGEKVGCGVKIL 157 (1176)
T ss_pred cHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHH---hcCCeEEEEeccHHHHHHHHHHHHH-HhhhcCceEEEE
Confidence 3445566667778888999999999999742 3222211 2355799999999999999988754 555555544332
Q ss_pred eecCcc------------CCCCccEEEEccHHHHHHHhcCCCCCCccEEEEccccc
Q psy1907 751 IRFEDC------------TSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 751 irfe~~------------~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HE 794 (1320)
....+. ......|+++|.|.|.+.+. .-.+..+++|||||||.
T Consensus 158 ~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD~ 212 (1176)
T PRK09401 158 YYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVDA 212 (1176)
T ss_pred EccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChHH
Confidence 222110 12346899999999998765 22345699999999994
No 174
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=97.81 E-value=0.00011 Score=94.16 Aligned_cols=101 Identities=20% Similarity=0.252 Sum_probs=70.1
Q ss_pred EEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCc----------c
Q psy1907 687 VLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFED----------C 756 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~----------~ 756 (1320)
..+|+|+||||||...-..++..- ..|.++++.-|.|.-|..++..+.+.. ..+|-.|+.-..... .
T Consensus 258 ~~Ll~g~TGSGKT~va~l~il~~~--~~g~qvlilaPT~~LA~Q~~~~~~~l~-~~~gi~v~lltg~~~~~~r~~~~~~i 334 (630)
T TIGR00643 258 NRLLQGDVGSGKTLVAALAMLAAI--EAGYQVALMAPTEILAEQHYNSLRNLL-APLGIEVALLTGSLKGKRRKELLETI 334 (630)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEECCHHHHHHHHHHHHHHHh-cccCcEEEEEecCCCHHHHHHHHHHH
Confidence 579999999999986533333221 123468999999999999998887543 344556654333221 1
Q ss_pred CCCCccEEEEccHHHHHHHhcCCCCCCccEEEEccccc
Q psy1907 757 TSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 757 ~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HE 794 (1320)
.+.+..|++.|.+.+.. +-.+.++++|||||+|.
T Consensus 335 ~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~ 368 (630)
T TIGR00643 335 ASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQHR 368 (630)
T ss_pred hCCCCCEEEecHHHHhc----cccccccceEEEechhh
Confidence 23356899999987643 34678999999999995
No 175
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.78 E-value=0.00044 Score=86.89 Aligned_cols=150 Identities=22% Similarity=0.176 Sum_probs=102.1
Q ss_pred cEEEEecCc--CHHHHHhhcCCCCEEEeCCccccee------EEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCH
Q psy1907 52 KLLISSATL--DAQKFSEFFDDAPVFRIPGRRFPVD------IYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQ 123 (1320)
Q Consensus 52 qlIl~SATl--~~~~f~~~f~~~~vi~i~g~~~pV~------~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~ 123 (1320)
++-.|+.|. ..+.|.+.+ +-+++.||.. .|+. ..|. ...++..+.+..+...|.. +..|||.+.+.
T Consensus 364 kLsGMTGTa~t~~~Ef~~iY-~l~Vv~IPtn-kp~~R~d~~d~iy~--t~~~k~~Aii~ei~~~~~~--GrPVLVgt~sI 437 (764)
T PRK12326 364 TVCGMTGTAVAAGEQLRQFY-DLGVSVIPPN-KPNIREDEADRVYA--TAAEKNDAIVEHIAEVHET--GQPVLVGTHDV 437 (764)
T ss_pred hheeecCCChhHHHHHHHHh-CCcEEECCCC-CCceeecCCCceEe--CHHHHHHHHHHHHHHHHHc--CCCEEEEeCCH
Confidence 678899998 446677777 4567777764 2322 1222 2345677777878777765 35699999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHc-CCCCCCCeEEEEeCcccccCCCCC-------------
Q psy1907 124 EEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIF-LPTPPNARKVVLATNIAETSLTID------------- 189 (1320)
Q Consensus 124 ~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~-~~~~~g~~kVlvATdIAe~gldIp------------- 189 (1320)
++.|.++..|.+. ++....|.+.-...+ ..+. +.-.+| .|.||||.|.||-||.
T Consensus 438 ~~SE~ls~~L~~~---------gI~h~vLNAk~~~~E-A~IIa~AG~~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V~ 505 (764)
T PRK12326 438 AESEELAERLRAA---------GVPAVVLNAKNDAEE-ARIIAEAGKYG--AVTVSTQMAGRGTDIRLGGSDEADRDRVA 505 (764)
T ss_pred HHHHHHHHHHHhC---------CCcceeeccCchHhH-HHHHHhcCCCC--cEEEEecCCCCccCeecCCCcccchHHHH
Confidence 9999999999873 566666777644444 3344 343444 4789999999999984
Q ss_pred --CccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCC-C
Q psy1907 190 --NIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNP-L 237 (1320)
Q Consensus 190 --~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~-g 237 (1320)
|==|||-+. .+-|.--=.|=.|||||.|. |
T Consensus 506 ~~GGLhVIgTe------------------rheSrRID~QLrGRaGRQGDpG 538 (764)
T PRK12326 506 ELGGLHVIGTG------------------RHRSERLDNQLRGRAGRQGDPG 538 (764)
T ss_pred HcCCcEEEecc------------------CCchHHHHHHHhcccccCCCCC
Confidence 222444332 34455556799999999985 6
No 176
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=97.77 E-value=0.00014 Score=89.08 Aligned_cols=121 Identities=20% Similarity=0.185 Sum_probs=86.9
Q ss_pred ccCCChhhHHHHHHHHHh----CCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCC
Q psy1907 667 KSLPIYPFKQDLIDAVRD----HQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVK 742 (1320)
Q Consensus 667 ~~LPi~~~~~~il~~i~~----~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~ 742 (1320)
......+++++.++++.+ +.-.+|+.|||||||..--..+.+.. .++++.-||+..+..-+++.....+..
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~-----~~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK-----RSTLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc-----CCEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 344466778888888887 89999999999999988777666543 238999999999988887777665543
Q ss_pred CCCeeeEEeecCccCCCCccEEEEccHHHHHH-HhcCCCCCCccEEEEcccccc
Q psy1907 743 LGCEVGYAIRFEDCTSERTIIKYMTDGTLHRE-FLSEPDLASYSVMIIDEAHPK 795 (1320)
Q Consensus 743 lG~~VGY~irfe~~~s~~T~i~y~TdG~Llre-l~~dp~L~~ys~iIiDE~HER 795 (1320)
..+|.-=.......+ -.|.|.|.-++.|. .+......+++.||+||||.-
T Consensus 108 --~~~g~~~~~~~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~ 158 (442)
T COG1061 108 --DEIGIYGGGEKELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHL 158 (442)
T ss_pred --cccceecCceeccCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccC
Confidence 234421111111111 46999999999998 455555568999999999953
No 177
>PF13245 AAA_19: Part of AAA domain
Probab=97.76 E-value=6.6e-05 Score=69.27 Aligned_cols=58 Identities=22% Similarity=0.353 Sum_probs=46.4
Q ss_pred HHHHHHhCCEEEEEcCCCCchhcHHHHHHHHcc--CCCCCcEEEEecccHHHHHHHHHHH
Q psy1907 678 LIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAG--FTKDKMKIGCTQPRRVAAMSVSARV 735 (1320)
Q Consensus 678 il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~--~~~~~~~I~~tQPRRvAA~svA~rv 735 (1320)
|..++..+++++|.|++||||||.+-+.+.+.- ....+.+|+|.-|.+.||-.+++|+
T Consensus 3 v~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 3 VRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 445677799999999999999988877765533 1122567999999999999999998
No 178
>PRK13766 Hef nuclease; Provisional
Probab=97.76 E-value=0.00013 Score=95.67 Aligned_cols=120 Identities=18% Similarity=0.156 Sum_probs=80.4
Q ss_pred ChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEE
Q psy1907 671 IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYA 750 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~ 750 (1320)
-..|..++.....++ .++|+.+||+|||.+.-..+... +...++++++.-|.+..+...++++.+..+.. +..|+-
T Consensus 16 ~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~-l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~- 91 (773)
T PRK13766 16 ARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAER-LHKKGGKVLILAPTKPLVEQHAEFFRKFLNIP-EEKIVV- 91 (773)
T ss_pred ccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHH-HHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCC-CceEEE-
Confidence 344555666655555 57889999999998543333322 12334579999999988888888877665542 223321
Q ss_pred eecCccC------CCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 751 IRFEDCT------SERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 751 irfe~~~------s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
+..+... -.+..|+++|.+++...++... .+.++++|||||||.
T Consensus 92 ~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~ 142 (773)
T PRK13766 92 FTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHR 142 (773)
T ss_pred EeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCcc
Confidence 1111111 1245799999999999887655 678999999999995
No 179
>KOG0948|consensus
Probab=97.73 E-value=0.00011 Score=89.96 Aligned_cols=115 Identities=18% Similarity=0.275 Sum_probs=82.9
Q ss_pred ChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEE
Q psy1907 671 IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYA 750 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~ 750 (1320)
..++...-+..|.+++-|+|++.|.+|||-..--.|.-+ + ..+.+|+.|-|=+.-.-.-..-+-+|.+ .||.
T Consensus 130 LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~s-L-r~kQRVIYTSPIKALSNQKYREl~~EF~-----DVGL- 201 (1041)
T KOG0948|consen 130 LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMS-L-REKQRVIYTSPIKALSNQKYRELLEEFK-----DVGL- 201 (1041)
T ss_pred cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHH-H-HhcCeEEeeChhhhhcchhHHHHHHHhc-----ccce-
Confidence 345667778899999999999999999996654444332 1 2345799999944333333333556654 4665
Q ss_pred eecCccCCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEcccc
Q psy1907 751 IRFEDCTSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAH 793 (1320)
Q Consensus 751 irfe~~~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~H 793 (1320)
+..|-..+++..-..||+.+|-.+|-... -+..+.-||+||+|
T Consensus 202 MTGDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIH 245 (1041)
T KOG0948|consen 202 MTGDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIH 245 (1041)
T ss_pred eecceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeeh
Confidence 34455667888889999999988876555 57889999999999
No 180
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=97.72 E-value=0.00016 Score=93.96 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=81.8
Q ss_pred ChhhHHHHHHHHHhCCEEEEEcCCCCchhcH--HHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeee
Q psy1907 671 IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQ--IPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVG 748 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~v~ii~geTGsGKTTq--vPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VG 748 (1320)
-|++..+-+.++.+++-+|++++||||||-- +|-+ +.-..+.+.++++.-|-|--|..+.+++.+ ++ ..|-.|+
T Consensus 37 p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL--~~l~~~~~~~aL~l~PtraLa~q~~~~l~~-l~-~~~i~v~ 112 (742)
T TIGR03817 37 PWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVL--SALADDPRATALYLAPTKALAADQLRAVRE-LT-LRGVRPA 112 (742)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHH--HHHhhCCCcEEEEEcChHHHHHHHHHHHHH-hc-cCCeEEE
Confidence 4667788888999999999999999999974 5633 211112344688888999988888888754 33 2233332
Q ss_pred EEeecCcc-------CCCCccEEEEccHHHHHHHhcCC-----CCCCccEEEEccccc
Q psy1907 749 YAIRFEDC-------TSERTIIKYMTDGTLHREFLSEP-----DLASYSVMIIDEAHP 794 (1320)
Q Consensus 749 Y~irfe~~-------~s~~T~i~y~TdG~Llrel~~dp-----~L~~ys~iIiDE~HE 794 (1320)
+..-+. ...+..|+++|.++|...++.+. .|++.++|||||||+
T Consensus 113 --~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~ 168 (742)
T TIGR03817 113 --TYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS 168 (742)
T ss_pred --EEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh
Confidence 221111 12346899999999987665432 388999999999996
No 181
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=97.69 E-value=0.00013 Score=93.95 Aligned_cols=129 Identities=19% Similarity=0.225 Sum_probs=83.4
Q ss_pred ChhhHHHHHHHHHhCC-EEEEEcCCCCchhcHHHHHHHHccCCC-CCcEEEEecccHHHHHHHHHHHHHHhCCCCC----
Q psy1907 671 IYPFKQDLIDAVRDHQ-VLIIEGETGSGKTTQIPQYLHEAGFTK-DKMKIGCTQPRRVAAMSVSARVAEEMGVKLG---- 744 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~-v~ii~geTGsGKTTqvPq~l~e~~~~~-~~~~I~~tQPRRvAA~svA~rva~e~~~~lG---- 744 (1320)
-+++..+++..+.+++ .+++.++||||||--+--|++-..... ...+++.+.|||.-|..+++.+-. ++..+.
T Consensus 16 PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~-~~k~l~~~~~ 94 (844)
T TIGR02621 16 PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEK-IGERLPDVPE 94 (844)
T ss_pred CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHH-HHHHhcccch
Confidence 4567778888888876 788889999999976544444211111 124677899999999998886533 443331
Q ss_pred -------------------CeeeEEeecCcc------CCCCccEEEEccHHHHHHHhcCC-------------CCCCccE
Q psy1907 745 -------------------CEVGYAIRFEDC------TSERTIIKYMTDGTLHREFLSEP-------------DLASYSV 786 (1320)
Q Consensus 745 -------------------~~VGY~irfe~~------~s~~T~i~y~TdG~Llrel~~dp-------------~L~~ys~ 786 (1320)
-.|..-+...+. -.....|++.|-.++.+..+..+ .|++.++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~ 174 (844)
T TIGR02621 95 VEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDAL 174 (844)
T ss_pred hhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccceE
Confidence 122222222221 12345799999777777766322 3789999
Q ss_pred EEEcccccceEEEcCCccc
Q psy1907 787 MIIDEAHPKVYVIDPGFCK 805 (1320)
Q Consensus 787 iIiDE~HER~~ViD~G~~k 805 (1320)
||||||| .|.||..
T Consensus 175 LVLDEAD-----Ld~gF~~ 188 (844)
T TIGR02621 175 IVHDEAH-----LEPAFQE 188 (844)
T ss_pred EEEehhh-----hccccHH
Confidence 9999999 5666643
No 182
>PRK14701 reverse gyrase; Provisional
Probab=97.69 E-value=0.00025 Score=97.82 Aligned_cols=117 Identities=14% Similarity=0.138 Sum_probs=78.4
Q ss_pred hhhHHHHHHHHHhCCEEEEEcCCCCchhc--HHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCC--CCee
Q psy1907 672 YPFKQDLIDAVRDHQVLIIEGETGSGKTT--QIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKL--GCEV 747 (1320)
Q Consensus 672 ~~~~~~il~~i~~~~v~ii~geTGsGKTT--qvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~l--G~~V 747 (1320)
++.+.+.+..+.+++-+++++|||||||+ |+|...+. ..|+++++.-|-|--|..++.++-. ++... |-.|
T Consensus 81 t~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~----~~g~~aLVl~PTreLa~Qi~~~l~~-l~~~~~~~v~v 155 (1638)
T PRK14701 81 WSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA----LKGKKCYIILPTTLLVKQTVEKIES-FCEKANLDVRL 155 (1638)
T ss_pred CHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH----hcCCeEEEEECHHHHHHHHHHHHHH-HHhhcCCceeE
Confidence 44556777778788888999999999999 33332221 2345789999999999988888754 33333 2334
Q ss_pred eEEeecCcc----------CCCCccEEEEccHHHHHHHhcCCCCCCccEEEEccccc
Q psy1907 748 GYAIRFEDC----------TSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 748 GY~irfe~~----------~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HE 794 (1320)
.+-...-+. .+.+..|+++|.|.|...+..-.. .++++|||||||.
T Consensus 156 ~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~-~~i~~iVVDEAD~ 211 (1638)
T PRK14701 156 VYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKH-LKFDFIFVDDVDA 211 (1638)
T ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhh-CCCCEEEEECcee
Confidence 432222111 123468999999988876543222 6799999999994
No 183
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.68 E-value=0.00029 Score=93.17 Aligned_cols=185 Identities=16% Similarity=0.177 Sum_probs=112.9
Q ss_pred CcEEEEecCcC----HHHHHhhcCCC--CEEEeCCcccce---eEEEEc--C------CccchHHHHHHHHHHHHhhCCC
Q psy1907 51 LKLLISSATLD----AQKFSEFFDDA--PVFRIPGRRFPV---DIYYTK--A------PEADYIDACVVSILQIHATQPL 113 (1320)
Q Consensus 51 ~qlIl~SATl~----~~~f~~~f~~~--~vi~i~g~~~pV---~~~y~~--~------~~~~~l~~~i~~v~~i~~~~~~ 113 (1320)
..+|++|||+. .+.|.+.+|-. ....+...+|+- ...|.. . ...+|.+.....+..+.... +
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~-~ 674 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAIT-S 674 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhc-C
Confidence 46899999995 35566666522 122222233331 112221 1 12456667777777775554 6
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCcc-
Q psy1907 114 GDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNII- 192 (1320)
Q Consensus 114 g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~- 192 (1320)
|++|||+|+.+.++.++..|..... ..++.++. .+.. ..|.++++.|+.|...||++|+....|||+||..
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~~-----~~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l 746 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELPE-----FEGYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGL 746 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhcc-----ccCceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCce
Confidence 8999999999999999999875321 01233222 2222 4677888899889999999999999999999876
Q ss_pred -EEEcCCCCccccccC----------CCCcccc--ceeccCHhhHHHHhhhcCCCCCCCCceEEEEe
Q psy1907 193 -YVIDPGFCKQNNFNS----------RTGMESL--TVVPISKASANQRAGVITGFNPLSDFRGCAHV 246 (1320)
Q Consensus 193 -~VID~g~~k~~~yd~----------~~g~~~l--~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L 246 (1320)
.||=.++|-.+--|| ..|-... ..-|-..-...|-.||.=|....+ |..+.+
T Consensus 747 ~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~--G~v~il 811 (850)
T TIGR01407 747 VCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDR--GSIVIL 811 (850)
T ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCce--EEEEEE
Confidence 455566654321111 0111111 112445566889999999987653 555544
No 184
>KOG0330|consensus
Probab=97.67 E-value=0.00019 Score=82.68 Aligned_cols=108 Identities=26% Similarity=0.293 Sum_probs=73.7
Q ss_pred HHhCCEEEEEcCCCCchhcH--HH--HHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCcc-
Q psy1907 682 VRDHQVLIIEGETGSGKTTQ--IP--QYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDC- 756 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTq--vP--q~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~- 756 (1320)
+..+.=||..++||||||-- +| |-|++..- .-..+|.-|-|=-|..+|+-. +-+|..+|-.|---|..-+.
T Consensus 95 ~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~---~~~~lVLtPtRELA~QI~e~f-e~Lg~~iglr~~~lvGG~~m~ 170 (476)
T KOG0330|consen 95 ALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK---LFFALVLTPTRELAQQIAEQF-EALGSGIGLRVAVLVGGMDMM 170 (476)
T ss_pred hhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC---CceEEEecCcHHHHHHHHHHH-HHhccccCeEEEEEecCchHH
Confidence 45566678899999999964 45 33554221 124677778777666666543 33444444444444445443
Q ss_pred -----CCCCccEEEEccHHHHHHHhcCC--CCCCccEEEEcccc
Q psy1907 757 -----TSERTIIKYMTDGTLHREFLSEP--DLASYSVMIIDEAH 793 (1320)
Q Consensus 757 -----~s~~T~i~y~TdG~Llrel~~dp--~L~~ys~iIiDE~H 793 (1320)
-+.+..|+.+|.|-|...+.+-. .|....++|+|||.
T Consensus 171 ~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD 214 (476)
T KOG0330|consen 171 LQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD 214 (476)
T ss_pred HHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH
Confidence 36678899999999999987544 68899999999998
No 185
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.65 E-value=0.00019 Score=94.70 Aligned_cols=112 Identities=9% Similarity=-0.011 Sum_probs=90.5
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCC---CCeEEEEeCcccccCCCCC
Q psy1907 113 LGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPP---NARKVVLATNIAETSLTID 189 (1320)
Q Consensus 113 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~---g~~kVlvATdIAe~gldIp 189 (1320)
+.++|||..-...++.+...|.. .++.++.+||+++..+|..+++.|.. +..-+|++|.++..||++.
T Consensus 487 g~KVLIFSQft~~LdiLed~L~~---------~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt 557 (1033)
T PLN03142 487 DSRVLIFSQMTRLLDILEDYLMY---------RGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLA 557 (1033)
T ss_pred CCeEEeehhHHHHHHHHHHHHHH---------cCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchh
Confidence 56899999877777766666654 36788999999999999999999953 3456799999999999999
Q ss_pred CccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHHH
Q psy1907 190 NIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEVL 252 (1320)
Q Consensus 190 ~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~ 252 (1320)
..++||.++. |=++....|+.||+.|-|..+.- .+|+|+++..+
T Consensus 558 ~Ad~VIiyD~------------------dWNP~~d~QAidRaHRIGQkk~V-~VyRLIt~gTI 601 (1033)
T PLN03142 558 TADIVILYDS------------------DWNPQVDLQAQDRAHRIGQKKEV-QVFRFCTEYTI 601 (1033)
T ss_pred hCCEEEEeCC------------------CCChHHHHHHHHHhhhcCCCceE-EEEEEEeCCcH
Confidence 9999998876 44567789999999999876532 68888887544
No 186
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.64 E-value=0.00022 Score=92.75 Aligned_cols=175 Identities=18% Similarity=0.173 Sum_probs=116.5
Q ss_pred CCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeee
Q psy1907 669 LPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVG 748 (1320)
Q Consensus 669 LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VG 748 (1320)
...+.+.++=+.+|..+.-|+|+++||||||-.---++.-+.- +|.+++.|-|=+.-.=..-..+-++.|.- -..||
T Consensus 118 F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~--~~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~vG 194 (1041)
T COG4581 118 FELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR--DGQRVIYTSPIKALSNQKYRDLLAKFGDV-ADMVG 194 (1041)
T ss_pred CCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH--cCCceEeccchhhhhhhHHHHHHHHhhhh-hhhcc
Confidence 4456677788899999999999999999999544433443332 23458889996665555666666666533 23356
Q ss_pred EEeecCccCCCCccEEEEccHHHHHHHhcC-CCCCCccEEEEcccccceEEEcC--Cccceee--ccCCCCcceeEEEEe
Q psy1907 749 YAIRFEDCTSERTIIKYMTDGTLHREFLSE-PDLASYSVMIIDEAHPKVYVIDP--GFCKQNN--FNSRTGMESLTVVPI 823 (1320)
Q Consensus 749 Y~irfe~~~s~~T~i~y~TdG~Llrel~~d-p~L~~ys~iIiDE~HER~~ViD~--G~~k~~~--y~~~~~~~~L~~~~i 823 (1320)
-- ..|-..++.+.+..||+.+|-.++..+ ..+..++.||+||+| |+=|. |.+.+-. +=|+ ++ .++--..
T Consensus 195 L~-TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvH---yi~D~eRG~VWEE~Ii~lP~-~v-~~v~LSA 268 (1041)
T COG4581 195 LM-TGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVH---YIGDRERGVVWEEVIILLPD-HV-RFVFLSA 268 (1041)
T ss_pred ce-ecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeee---eccccccchhHHHHHHhcCC-CC-cEEEEeC
Confidence 53 345556788889999999988888777 589999999999999 33221 1111111 1122 11 1333334
Q ss_pred cHhhHHHHhcccCCccCCeEEEecchHHh
Q psy1907 824 SKASANQRAGRAGRVAAGKCFRLYTAWAY 852 (1320)
Q Consensus 824 Skasa~QR~GRAGR~~pG~cyrLyt~~~~ 852 (1320)
+-.++.|=++=-+++..|-|+-.||...+
T Consensus 269 Tv~N~~EF~~Wi~~~~~~~~~vv~t~~Rp 297 (1041)
T COG4581 269 TVPNAEEFAEWIQRVHSQPIHVVSTEHRP 297 (1041)
T ss_pred CCCCHHHHHHHHHhccCCCeEEEeecCCC
Confidence 45677787777787778888888887654
No 187
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.63 E-value=0.00029 Score=89.61 Aligned_cols=213 Identities=14% Similarity=0.152 Sum_probs=122.0
Q ss_pred CCCccEEEEeCCCccCcCcc-hHHHHHHHHhh---cCCCCcEEEEecCcCHHHHHhhcCC-CCEEEeCCccc---ceeEE
Q psy1907 16 LASYSVMIIDEAHERTLHTD-ILFGLVKDIVR---FRSDLKLLISSATLDAQKFSEFFDD-APVFRIPGRRF---PVDIY 87 (1320)
Q Consensus 16 Ls~~s~iVLDEaHeR~l~td-~ll~llk~l~~---~r~~~qlIl~SATl~~~~f~~~f~~-~~vi~i~g~~~---pV~~~ 87 (1320)
++++..|||||=||-+.-.+ -...-.+++.- .-.+..+||-|||...+.+.+--.+ -..+.+..|.. +.++.
T Consensus 311 f~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~ 390 (730)
T COG1198 311 FKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVE 390 (730)
T ss_pred hhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcce
Confidence 68999999999997553322 12222333322 2235789999999998887765433 12333333322 22232
Q ss_pred EEcCCc----cc--hHHHHHHHHHHHHhhCCCCCEEEEcCCHH-------------------------------------
Q psy1907 88 YTKAPE----AD--YIDACVVSILQIHATQPLGDILVFLTGQE------------------------------------- 124 (1320)
Q Consensus 88 y~~~~~----~~--~l~~~i~~v~~i~~~~~~g~iLVFl~t~~------------------------------------- 124 (1320)
.+.... .+ +-..++..+.+-.. .+..+|+|+|.+-
T Consensus 391 iiDmr~e~~~~~~~lS~~Ll~~i~~~l~--~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~C 468 (730)
T COG1198 391 IIDMRKEPLETGRSLSPALLEAIRKTLE--RGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYC 468 (730)
T ss_pred EEeccccccccCccCCHHHHHHHHHHHh--cCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCC
Confidence 222111 00 11222222222111 1345677766554
Q ss_pred -----------------------HHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHH--HHHHcCCCCCCCeEEEEeC
Q psy1907 125 -----------------------EIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDM--QTKIFLPTPPNARKVVLAT 179 (1320)
Q Consensus 125 -----------------------eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~--r~~i~~~~~~g~~kVlvAT 179 (1320)
.+|.+.+.|.+.+ |+..++-+-++..... -...+..|.+|+..|||-|
T Consensus 469 g~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~F-------P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGT 541 (730)
T COG1198 469 GYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLF-------PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGT 541 (730)
T ss_pred CCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHC-------CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecc
Confidence 3444445555543 4666777766655533 2456778899999999999
Q ss_pred cccccCCCCCCccEEE----cCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCC-CCCCCceEEEEecCHH
Q psy1907 180 NIAETSLTIDNIIYVI----DPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGF-NPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 180 dIAe~gldIp~I~~VI----D~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~-g~g~~fg~~~~L~~~~ 250 (1320)
.+.+-|.+.|+|+.|. |.++ ..-|.|.+ -=+-.-+.|=+|||||. .+| .+.+--|.++
T Consensus 542 QmiaKG~~fp~vtLVgvl~aD~~L---~~~DfRA~-------Er~fqll~QvaGRAgR~~~~G---~VvIQT~~P~ 604 (730)
T COG1198 542 QMIAKGHDFPNVTLVGVLDADTGL---GSPDFRAS-------ERTFQLLMQVAGRAGRAGKPG---EVVIQTYNPD 604 (730)
T ss_pred hhhhcCCCcccceEEEEEechhhh---cCCCcchH-------HHHHHHHHHHHhhhccCCCCC---eEEEEeCCCC
Confidence 9999999999999886 4444 11122222 11224578899999998 667 3555555543
No 188
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=97.62 E-value=0.00019 Score=91.58 Aligned_cols=122 Identities=28% Similarity=0.357 Sum_probs=84.1
Q ss_pred HhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHH--HHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHh---
Q psy1907 665 TKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQI--PQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEM--- 739 (1320)
Q Consensus 665 ~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqv--Pq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~--- 739 (1320)
.++.|-+.++.-+++.++.-++-.|+...||+|||.-. |-++. ...+. .+.+.-|-+ .+|.|.+++|
T Consensus 63 ~~R~lglrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~--aL~g~--~V~VVTpn~----yLA~Rdae~m~~l 134 (762)
T TIGR03714 63 DKRVLGMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLN--ALTGK--GAMLVTTND----YLAKRDAEEMGPV 134 (762)
T ss_pred HHhhcCCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHH--hhcCC--ceEEeCCCH----HHHHHHHHHHHHH
Confidence 35677788899999999988888999999999999764 65443 23322 366666766 4556666655
Q ss_pred CCCCCCeeeEEeecC---cc------CCCCccEEEEccHHH----HHHHhc----CCCCCCccEEEEccccc
Q psy1907 740 GVKLGCEVGYAIRFE---DC------TSERTIIKYMTDGTL----HREFLS----EPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 740 ~~~lG~~VGY~irfe---~~------~s~~T~i~y~TdG~L----lrel~~----dp~L~~ys~iIiDE~HE 794 (1320)
...+|-+||..+... +. ......|+|+|.|-| ||.-+. +..+.+..++||||||.
T Consensus 135 ~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDs 206 (762)
T TIGR03714 135 YEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDS 206 (762)
T ss_pred HhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhh
Confidence 345677788654321 11 113568999999998 343222 23578899999999984
No 189
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.56 E-value=4.3e-05 Score=77.03 Aligned_cols=62 Identities=24% Similarity=0.374 Sum_probs=41.7
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHHccCC----CCCcEEEEecccHHHHHHHHHHHHHHhCCCCC
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHEAGFT----KDKMKIGCTQPRRVAAMSVSARVAEEMGVKLG 744 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e~~~~----~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG 744 (1320)
++..+++|.|++||||||.+-+++.+.... ....-+.+.-|......+++..++++++....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 67 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK 67 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc
Confidence 467889999999999999999998764210 01224677777777888999999999987643
No 190
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.53 E-value=0.0016 Score=84.08 Aligned_cols=154 Identities=22% Similarity=0.177 Sum_probs=99.6
Q ss_pred CcEEEEecCc--CHHHHHhhcCCCCEEEeCCccccee-EEE---EcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHH
Q psy1907 51 LKLLISSATL--DAQKFSEFFDDAPVFRIPGRRFPVD-IYY---TKAPEADYIDACVVSILQIHATQPLGDILVFLTGQE 124 (1320)
Q Consensus 51 ~qlIl~SATl--~~~~f~~~f~~~~vi~i~g~~~pV~-~~y---~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~ 124 (1320)
.++..|+.|. ..+.|.+.+ +-+++.||.. .|+. .-+ .-.....+..+.+..+...|... ..|||-+.+.+
T Consensus 504 ~kl~GmTGTa~~e~~Ef~~iY-~l~v~~iPt~-kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~g--rPvLigt~si~ 579 (970)
T PRK12899 504 EKLAGMTGTAITESREFKEIY-NLYVLQVPTF-KPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKG--NPILIGTESVE 579 (970)
T ss_pred chhcccCCCCHHHHHHHHHHh-CCCEEECCCC-CCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCC--CCEEEEeCcHH
Confidence 3677888888 234466655 4567877753 2221 111 11123466778888888887664 46999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCC--------ccEEEc
Q psy1907 125 EIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDN--------IIYVID 196 (1320)
Q Consensus 125 eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~--------I~~VID 196 (1320)
.-|.++..|.+. ++....|.+.-...+-.-|-+.-.+| .|.||||.|.||-||.= ==|||-
T Consensus 580 ~se~ls~~L~~~---------gi~h~vLNak~~~~Ea~iia~AG~~g--~VTIATNmAGRGTDIkl~~~v~~~GGLhVIg 648 (970)
T PRK12899 580 VSEKLSRILRQN---------RIEHTVLNAKNHAQEAEIIAGAGKLG--AVTVATNMAGRGTDIKLDEEAVAVGGLYVIG 648 (970)
T ss_pred HHHHHHHHHHHc---------CCcceecccchhhhHHHHHHhcCCCC--cEEEeeccccCCcccccCchHHhcCCcEEEe
Confidence 999999999863 55556666653333323333333444 58899999999999831 124443
Q ss_pred CCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCC-C
Q psy1907 197 PGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNP-L 237 (1320)
Q Consensus 197 ~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~-g 237 (1320)
+. .+-|.---.|=.|||||.|. |
T Consensus 649 Te------------------r~es~Rid~Ql~GRagRQGdpG 672 (970)
T PRK12899 649 TS------------------RHQSRRIDRQLRGRCARLGDPG 672 (970)
T ss_pred ec------------------cCchHHHHHHHhcccccCCCCC
Confidence 32 24455666899999999985 5
No 191
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=97.51 E-value=0.00063 Score=91.93 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=76.7
Q ss_pred hhhHHHHHHHHHhCCEEEEEcCCCCchhcHH-HHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCC---ee
Q psy1907 672 YPFKQDLIDAVRDHQVLIIEGETGSGKTTQI-PQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGC---EV 747 (1320)
Q Consensus 672 ~~~~~~il~~i~~~~v~ii~geTGsGKTTqv-Pq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~---~V 747 (1320)
++....-+..+..++.++++|+||||||+-. |-.++- ...+.++++.-|-|--|..+++++..- ....|- .|
T Consensus 80 ~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l---~~~g~~vLIL~PTreLa~Qi~~~l~~l-~~~~~i~~~~i 155 (1171)
T TIGR01054 80 WSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFL---AKKGKRCYIILPTTLLVIQVAEKISSL-AEKAGVGTVNI 155 (1171)
T ss_pred cHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEeCHHHHHHHHHHHHHHH-HHhcCCceeee
Confidence 4455566677788889999999999999853 322211 123457999999999999998877543 222221 13
Q ss_pred eEEeecC----------ccCCCCccEEEEccHHHHHHHhcCCCCC-CccEEEEccccc
Q psy1907 748 GYAIRFE----------DCTSERTIIKYMTDGTLHREFLSEPDLA-SYSVMIIDEAHP 794 (1320)
Q Consensus 748 GY~irfe----------~~~s~~T~i~y~TdG~Llrel~~dp~L~-~ys~iIiDE~HE 794 (1320)
|+-...- ...+....|++.|.|.|.+.+.. +. ++++|||||||.
T Consensus 156 ~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~---l~~~~~~iVvDEaD~ 210 (1171)
T TIGR01054 156 GAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE---LGPKFDFIFVDDVDA 210 (1171)
T ss_pred eeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH---hcCCCCEEEEeChHh
Confidence 3211111 01123468999999999876643 33 899999999994
No 192
>KOG1123|consensus
Probab=97.47 E-value=0.0005 Score=81.15 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=77.6
Q ss_pred HHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCC-CCeEEEEe
Q psy1907 100 CVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPP-NARKVVLA 178 (1320)
Q Consensus 100 ~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~-g~~kVlvA 178 (1320)
++..+...|... +.+||||-...-.....+-.|.+ -.+||.-+|.+|.+|+++|+- ..++-|+-
T Consensus 531 aCqfLI~~HE~R-gDKiIVFsDnvfALk~YAikl~K--------------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFl 595 (776)
T KOG1123|consen 531 ACQFLIKFHERR-GDKIIVFSDNVFALKEYAIKLGK--------------PFIYGPTSQNERMKILQNFQTNPKVNTIFL 595 (776)
T ss_pred HHHHHHHHHHhc-CCeEEEEeccHHHHHHHHHHcCC--------------ceEECCCchhHHHHHHHhcccCCccceEEE
Confidence 456677777663 56799999877665554444432 237999999999999999964 46788888
Q ss_pred CcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCC
Q psy1907 179 TNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNP 236 (1320)
Q Consensus 179 TdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~ 236 (1320)
+-++.+|||+|...+.|+- .+.. -|+-+--||.||.=|+..
T Consensus 596 SKVgDtSiDLPEAnvLIQI--------SSH~---------GSRRQEAQRLGRILRAKk 636 (776)
T KOG1123|consen 596 SKVGDTSIDLPEANVLIQI--------SSHG---------GSRRQEAQRLGRILRAKK 636 (776)
T ss_pred eeccCccccCCcccEEEEE--------cccc---------cchHHHHHHHHHHHHHhh
Confidence 9999999999999999962 1122 255667789998877654
No 193
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.44 E-value=0.00012 Score=79.95 Aligned_cols=91 Identities=29% Similarity=0.417 Sum_probs=62.1
Q ss_pred CEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccCCCCccEEE
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSERTIIKY 765 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~s~~T~i~y 765 (1320)
+|++++|+||+||||.+..+-+.....+.+-.++|+-.-|++|..--+..|+.+|.++ |.++.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~-----~~~~~~~---------- 66 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPF-----YVARTES---------- 66 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEE-----EESSTTS----------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhcccc-----chhhcch----------
Confidence 5899999999999999998766544333333578999999999999999999998653 1111110
Q ss_pred EccHHHHHHHhcCCCCCCccEEEEccc
Q psy1907 766 MTDGTLHREFLSEPDLASYSVMIIDEA 792 (1320)
Q Consensus 766 ~TdG~Llrel~~dp~L~~ys~iIiDE~ 792 (1320)
.+.-++++.+....-++|++|+||-+
T Consensus 67 -~~~~~~~~~l~~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 67 -DPAEIAREALEKFRKKGYDLVLIDTA 92 (196)
T ss_dssp -CHHHHHHHHHHHHHHTTSSEEEEEE-
T ss_pred -hhHHHHHHHHHHHhhcCCCEEEEecC
Confidence 12334444444334456889998876
No 194
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.44 E-value=0.00038 Score=89.62 Aligned_cols=118 Identities=19% Similarity=0.287 Sum_probs=78.0
Q ss_pred hhhHHHHHHHHHh---CCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeee
Q psy1907 672 YPFKQDLIDAVRD---HQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVG 748 (1320)
Q Consensus 672 ~~~~~~il~~i~~---~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VG 748 (1320)
.+...+.++.+.+ ++++++.|+||||||...-+.+.+. +. .|+.+++.-|.+.-|..+++++.+.+|.+++.-.|
T Consensus 146 t~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~-l~-~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s 223 (679)
T PRK05580 146 NPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEV-LA-QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHS 223 (679)
T ss_pred CHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHH-HH-cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 3444456666655 5889999999999997664444332 12 24568899999999999999998876644322111
Q ss_pred E-Ee--e---cCccCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEcccccceE
Q psy1907 749 Y-AI--R---FEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPKVY 797 (1320)
Q Consensus 749 Y-~i--r---fe~~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER~~ 797 (1320)
. +. | +....+....|++.|-+-+. -.+.+.+.|||||+|+-.|
T Consensus 224 ~~s~~~r~~~~~~~~~g~~~IVVgTrsal~------~p~~~l~liVvDEeh~~s~ 272 (679)
T PRK05580 224 GLSDGERLDEWRKAKRGEAKVVIGARSALF------LPFKNLGLIIVDEEHDSSY 272 (679)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEeccHHhc------ccccCCCEEEEECCCcccc
Confidence 1 00 0 00112345689999988764 2367889999999996544
No 195
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=97.42 E-value=0.00043 Score=88.74 Aligned_cols=117 Identities=27% Similarity=0.304 Sum_probs=85.0
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcH--HHHH--HHHcc--CCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeee
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQ--IPQY--LHEAG--FTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVG 748 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTq--vPq~--l~e~~--~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VG 748 (1320)
+.+.+..|.++..++|++|||||||-- +|-+ |++.| -..+|-.++..-|=|.-+.-+=.|+ ++++..+|-+|
T Consensus 27 Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL-~~~~~~~G~~v- 104 (814)
T COG1201 27 QRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRL-EEPLRELGIEV- 104 (814)
T ss_pred HHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHH-HHHHHHcCCcc-
Confidence 345667788999999999999999964 5655 55554 2222334455678888888888887 34566777777
Q ss_pred EEeecCccCCC--------CccEEEEccHHHHHHHhcCC---CCCCccEEEEccccc
Q psy1907 749 YAIRFEDCTSE--------RTIIKYMTDGTLHREFLSEP---DLASYSVMIIDEAHP 794 (1320)
Q Consensus 749 Y~irfe~~~s~--------~T~i~y~TdG~Llrel~~dp---~L~~ys~iIiDE~HE 794 (1320)
.||..|.+.. -..|...|.+.|-=.|.+.. .|.++-+|||||+||
T Consensus 105 -~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHe 160 (814)
T COG1201 105 -AVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHA 160 (814)
T ss_pred -ceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhh
Confidence 8888876642 24599999998765554422 689999999999994
No 196
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.40 E-value=0.0018 Score=83.86 Aligned_cols=151 Identities=21% Similarity=0.205 Sum_probs=99.4
Q ss_pred cEEEEecCc--CHHHHHhhcCCCCEEEeCCccccee------EEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCH
Q psy1907 52 KLLISSATL--DAQKFSEFFDDAPVFRIPGRRFPVD------IYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQ 123 (1320)
Q Consensus 52 qlIl~SATl--~~~~f~~~f~~~~vi~i~g~~~pV~------~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~ 123 (1320)
++-.|+.|. ....|.+.+ +-+++.||.. .|+. ..|. ....+..+.+..+..+|.. +..|||-+.|.
T Consensus 565 kLsGMTGTA~tea~Ef~~IY-~L~Vv~IPTn-rP~~R~D~~D~vy~--t~~eK~~Aii~ei~~~~~~--GrPVLVGT~SV 638 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIY-KLDVVVIPTN-RPIARKDKEDLVYK--TKREKYNAVIEEITELSEA--GRPVLVGTTSV 638 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHh-CCCEEECCCC-CCcceecCCCeEec--CHHHHHHHHHHHHHHHHHC--CCCEEEEeCcH
Confidence 566677777 334466655 4567777754 2321 2222 2345667888888888865 35699999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCC--------CccEEE
Q psy1907 124 EEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTID--------NIIYVI 195 (1320)
Q Consensus 124 ~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp--------~I~~VI 195 (1320)
+.-|.++++|... ++..-.|.+.....+-.-|-+.-.+|. |-||||.|.||-||. |==|||
T Consensus 639 e~SE~lS~~L~~~---------gI~H~VLNAK~h~~EAeIVA~AG~~Ga--VTIATNMAGRGTDIkLg~~V~e~GGL~VI 707 (1112)
T PRK12901 639 EISELLSRMLKMR---------KIPHNVLNAKLHQKEAEIVAEAGQPGT--VTIATNMAGRGTDIKLSPEVKAAGGLAII 707 (1112)
T ss_pred HHHHHHHHHHHHc---------CCcHHHhhccchhhHHHHHHhcCCCCc--EEEeccCcCCCcCcccchhhHHcCCCEEE
Confidence 9999999999873 444444555544455343444445555 789999999999985 223455
Q ss_pred cCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCC-C
Q psy1907 196 DPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNP-L 237 (1320)
Q Consensus 196 D~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~-g 237 (1320)
-+. .+-|.--=.|=.|||||.|. |
T Consensus 708 gTe------------------rheSrRID~QLrGRaGRQGDPG 732 (1112)
T PRK12901 708 GTE------------------RHESRRVDRQLRGRAGRQGDPG 732 (1112)
T ss_pred Ecc------------------CCCcHHHHHHHhcccccCCCCC
Confidence 332 34555666899999999985 6
No 197
>PRK10689 transcription-repair coupling factor; Provisional
Probab=97.36 E-value=0.00062 Score=91.67 Aligned_cols=102 Identities=18% Similarity=0.226 Sum_probs=70.2
Q ss_pred CEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCcc---------
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDC--------- 756 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~--------- 756 (1320)
.-++++|+||||||...=..++.. ...++.++|.-|.|.-|..+++.+.+.++ ..+-.|+.-.++-+.
T Consensus 622 ~d~Ll~a~TGsGKT~val~aa~~~--~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~-~~~v~i~~l~g~~s~~e~~~il~~ 698 (1147)
T PRK10689 622 MDRLVCGDVGFGKTEVAMRAAFLA--VENHKQVAVLVPTTLLAQQHYDNFRDRFA-NWPVRIEMLSRFRSAKEQTQILAE 698 (1147)
T ss_pred CCEEEEcCCCcCHHHHHHHHHHHH--HHcCCeEEEEeCcHHHHHHHHHHHHHhhc-cCCceEEEEECCCCHHHHHHHHHH
Confidence 568999999999997542222111 12355799999999999999988876543 234455554444322
Q ss_pred -CCCCccEEEEccHHHHHHHhcCCCCCCccEEEEccccc
Q psy1907 757 -TSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 757 -~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HE 794 (1320)
...+..|+++|.++| ..+-.+.+.++|||||+|.
T Consensus 699 l~~g~~dIVVgTp~lL----~~~v~~~~L~lLVIDEahr 733 (1147)
T PRK10689 699 AAEGKIDILIGTHKLL----QSDVKWKDLGLLIVDEEHR 733 (1147)
T ss_pred HHhCCCCEEEECHHHH----hCCCCHhhCCEEEEechhh
Confidence 123457999999754 2345678999999999996
No 198
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=97.28 E-value=0.00096 Score=89.61 Aligned_cols=115 Identities=20% Similarity=0.274 Sum_probs=69.9
Q ss_pred HHHHHh-CCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeee--EEee-cC
Q psy1907 679 IDAVRD-HQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVG--YAIR-FE 754 (1320)
Q Consensus 679 l~~i~~-~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VG--Y~ir-fe 754 (1320)
.+++.+ ++-.+|+.+||||||--+-.++....-....++|++.-||+--+...+..... .+..-+..++ |++. ..
T Consensus 426 ~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~-~~~~~~~~~~~i~~i~~L~ 504 (1123)
T PRK11448 426 EKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKD-TKIEGDQTFASIYDIKGLE 504 (1123)
T ss_pred HHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHh-cccccccchhhhhchhhhh
Confidence 344443 45688889999999944433332211111234799999998877776664432 2222221111 2222 11
Q ss_pred c-cCCCCccEEEEccHHHHHHHhcC------CCCCCccEEEEccccc
Q psy1907 755 D-CTSERTIIKYMTDGTLHREFLSE------PDLASYSVMIIDEAHP 794 (1320)
Q Consensus 755 ~-~~s~~T~i~y~TdG~Llrel~~d------p~L~~ys~iIiDE~HE 794 (1320)
+ ....+++|.++|-..|.+.+... +.+..+++|||||||.
T Consensus 505 ~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHR 551 (1123)
T PRK11448 505 DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHR 551 (1123)
T ss_pred hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCC
Confidence 1 22346899999999888876431 4578899999999994
No 199
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.22 E-value=0.0032 Score=81.18 Aligned_cols=120 Identities=22% Similarity=0.243 Sum_probs=79.4
Q ss_pred cEEEEecCcC--HHHHHhhcCCCCEEEeCCccccee------EEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCH
Q psy1907 52 KLLISSATLD--AQKFSEFFDDAPVFRIPGRRFPVD------IYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQ 123 (1320)
Q Consensus 52 qlIl~SATl~--~~~f~~~f~~~~vi~i~g~~~pV~------~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~ 123 (1320)
++-.|+.|.. .+.|.+.+ +-+++.||... |+. ..|. ....+..+.+..+..+|.. +..|||-+.|.
T Consensus 386 kLsGMTGTa~te~~Ef~~iY-~l~Vv~IPTnk-P~~R~D~~d~vy~--t~~eK~~Ai~~ei~~~~~~--GrPVLVGT~SV 459 (913)
T PRK13103 386 KLSGMTGTADTEAFEFRQIY-GLDVVVIPPNK-PLARKDFNDLVYL--TAEEKYAAIITDIKECMAL--GRPVLVGTATI 459 (913)
T ss_pred hhccCCCCCHHHHHHHHHHh-CCCEEECCCCC-CcccccCCCeEEc--CHHHHHHHHHHHHHHHHhC--CCCEEEEeCCH
Confidence 5677888873 34566666 56678777532 221 2232 2345667778888877765 35699999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCC
Q psy1907 124 EEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTI 188 (1320)
Q Consensus 124 ~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldI 188 (1320)
+.-|.++.+|.+. ++..-.|.+.....+-.-|-+.-.+| .|.||||.|.||-||
T Consensus 460 e~SE~ls~~L~~~---------gi~h~VLNAk~~~~EA~IIa~AG~~G--aVTIATNMAGRGTDI 513 (913)
T PRK13103 460 ETSEHMSNLLKKE---------GIEHKVLNAKYHEKEAEIIAQAGRPG--ALTIATNMAGRGTDI 513 (913)
T ss_pred HHHHHHHHHHHHc---------CCcHHHhccccchhHHHHHHcCCCCC--cEEEeccCCCCCCCE
Confidence 9999999999874 44444455554444433333343444 478999999999998
No 200
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.20 E-value=0.0013 Score=66.07 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=26.5
Q ss_pred HHHHHHHHHh--CCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 675 KQDLIDAVRD--HQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 675 ~~~il~~i~~--~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
..++...+.. +..++|+|++||||||.+=......
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4556666666 7899999999999998776555443
No 201
>KOG0343|consensus
Probab=97.19 E-value=0.0003 Score=83.99 Aligned_cols=155 Identities=23% Similarity=0.302 Sum_probs=100.5
Q ss_pred HHHHhCCEEEEEcCCCCchhc--HHHHH--HHHccCCCC-C-cEEEEecccHHHHH--HHHHHHHHHhCCCCCCeee-EE
Q psy1907 680 DAVRDHQVLIIEGETGSGKTT--QIPQY--LHEAGFTKD-K-MKIGCTQPRRVAAM--SVSARVAEEMGVKLGCEVG-YA 750 (1320)
Q Consensus 680 ~~i~~~~v~ii~geTGsGKTT--qvPq~--l~e~~~~~~-~-~~I~~tQPRRvAA~--svA~rva~e~~~~lG~~VG-Y~ 750 (1320)
-++.-+.|+ =.+-||||||- .||-. |+..+|+.. | +-++++--|.+|.. .+-.+|+.-.+...|--+| --
T Consensus 102 ~aL~G~Dvl-GAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~ 180 (758)
T KOG0343|consen 102 MALQGHDVL-GAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKD 180 (758)
T ss_pred hhccCcccc-cccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCch
Confidence 345555544 36789999996 46744 777888764 2 23556655655543 4556677777776666665 44
Q ss_pred eecCccCCCCccEEEEccHHHHHHHhcCCCCC--CccEEEEcccccceEEEcCCccceee----ccCCCCcceeEEEEec
Q psy1907 751 IRFEDCTSERTIIKYMTDGTLHREFLSEPDLA--SYSVMIIDEAHPKVYVIDPGFCKQNN----FNSRTGMESLTVVPIS 824 (1320)
Q Consensus 751 irfe~~~s~~T~i~y~TdG~Llrel~~dp~L~--~ys~iIiDE~HER~~ViD~G~~k~~~----y~~~~~~~~L~~~~iS 824 (1320)
+.||...=.+-.|+.||.|-||+.|...|.++ +.-++|+|||. -++|.||.++.. +-|..+- +|. ...+
T Consensus 181 ~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD---R~LDMGFk~tL~~Ii~~lP~~RQ-TLL-FSAT 255 (758)
T KOG0343|consen 181 VKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD---RMLDMGFKKTLNAIIENLPKKRQ-TLL-FSAT 255 (758)
T ss_pred hHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH---HHHHHhHHHHHHHHHHhCChhhe-eee-eecc
Confidence 56665555677899999999999999999765 57789999995 578999987643 2222221 122 2233
Q ss_pred HhhHHHHhcccCCccC
Q psy1907 825 KASANQRAGRAGRVAA 840 (1320)
Q Consensus 825 kasa~QR~GRAGR~~p 840 (1320)
+....++--|-.-.-|
T Consensus 256 qt~svkdLaRLsL~dP 271 (758)
T KOG0343|consen 256 QTKSVKDLARLSLKDP 271 (758)
T ss_pred cchhHHHHHHhhcCCC
Confidence 3444455555544555
No 202
>KOG0345|consensus
Probab=97.12 E-value=0.0035 Score=74.25 Aligned_cols=116 Identities=25% Similarity=0.270 Sum_probs=70.1
Q ss_pred HHHHHHhCCEEEEEcCCCCchhcH--HHHH--HH-HccCCCCC--cEEEEecccHHHHH--HHHHHHHHHh-CCCCCCee
Q psy1907 678 LIDAVRDHQVLIIEGETGSGKTTQ--IPQY--LH-EAGFTKDK--MKIGCTQPRRVAAM--SVSARVAEEM-GVKLGCEV 747 (1320)
Q Consensus 678 il~~i~~~~v~ii~geTGsGKTTq--vPq~--l~-e~~~~~~~--~~I~~tQPRRvAA~--svA~rva~e~-~~~lG~~V 747 (1320)
-+-.+.+|.=|++.++||||||-- +|-+ |+ ..+-...+ +.++++--|.+|.. +||+-..+-+ +...---|
T Consensus 36 tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~v 115 (567)
T KOG0345|consen 36 TIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLV 115 (567)
T ss_pred hhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEe
Confidence 344567788899999999999975 4644 22 22222222 34666666666653 4555544431 11111123
Q ss_pred eEEeecCccC---CCCccEEEEccHHHHHHHhcCC-CCC--CccEEEEcccc
Q psy1907 748 GYAIRFEDCT---SERTIIKYMTDGTLHREFLSEP-DLA--SYSVMIIDEAH 793 (1320)
Q Consensus 748 GY~irfe~~~---s~~T~i~y~TdG~Llrel~~dp-~L~--~ys~iIiDE~H 793 (1320)
|=+---+|.. .++..|..+|.|-|+..++..- .++ +.+++|+|||.
T Consensus 116 GG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD 167 (567)
T KOG0345|consen 116 GGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD 167 (567)
T ss_pred cCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchH
Confidence 3211112221 2456799999999999998744 344 89999999998
No 203
>KOG0342|consensus
Probab=97.08 E-value=0.0016 Score=77.43 Aligned_cols=123 Identities=22% Similarity=0.307 Sum_probs=93.8
Q ss_pred HHhCCEEEEEcCCCCchhc--HHHHH--HHHccCCC-CCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCcc
Q psy1907 682 VRDHQVLIIEGETGSGKTT--QIPQY--LHEAGFTK-DKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDC 756 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTT--qvPq~--l~e~~~~~-~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~ 756 (1320)
+..++-++..+-||||||- .||-+ ++..-+.. ++-.+++.-|+|--|+..+.-+-+-+...-+..||+-|...+.
T Consensus 116 ll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~ 195 (543)
T KOG0342|consen 116 LLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNF 195 (543)
T ss_pred cCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccc
Confidence 4456678889999999996 46755 55554443 3446888899999999988877666666558899999998875
Q ss_pred CC------CCccEEEEccHHHHHHHhcCCC--CCCccEEEEcccccceEEEcCCcccee
Q psy1907 757 TS------ERTIIKYMTDGTLHREFLSEPD--LASYSVMIIDEAHPKVYVIDPGFCKQN 807 (1320)
Q Consensus 757 ~s------~~T~i~y~TdG~Llrel~~dp~--L~~ys~iIiDE~HER~~ViD~G~~k~~ 807 (1320)
.. ....|.+.|.|-|+-.|++.+. .....++|||||. -..|.||.+..
T Consensus 196 ~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD---rlLd~GF~~di 251 (543)
T KOG0342|consen 196 SVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD---RLLDIGFEEDV 251 (543)
T ss_pred hHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch---hhhhcccHHHH
Confidence 42 2678999999999999999884 3345799999995 56788887653
No 204
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.04 E-value=0.0036 Score=80.13 Aligned_cols=116 Identities=12% Similarity=0.039 Sum_probs=70.5
Q ss_pred ChhhHHHHHHHHHh-C--CEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCee
Q psy1907 671 IYPFKQDLIDAVRD-H--QVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEV 747 (1320)
Q Consensus 671 i~~~~~~il~~i~~-~--~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~V 747 (1320)
..+|..+-++++.. + ..-||+.|||+|||.+.=-.+... +++++|..|+.+.+..-+..+.+-.+... ..|
T Consensus 256 LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-----~k~tLILvps~~Lv~QW~~ef~~~~~l~~-~~I 329 (732)
T TIGR00603 256 IRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-----KKSCLVLCTSAVSVEQWKQQFKMWSTIDD-SQI 329 (732)
T ss_pred cCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-----CCCEEEEeCcHHHHHHHHHHHHHhcCCCC-ceE
Confidence 34555555555543 3 367899999999998865444332 23578888999888777777665433222 234
Q ss_pred eEEeecCcc--CCCCccEEEEccHHHHHHHhcC-------CCC--CCccEEEEcccc
Q psy1907 748 GYAIRFEDC--TSERTIIKYMTDGTLHREFLSE-------PDL--ASYSVMIIDEAH 793 (1320)
Q Consensus 748 GY~irfe~~--~s~~T~i~y~TdG~Llrel~~d-------p~L--~~ys~iIiDE~H 793 (1320)
|--.. +.+ ......|+.+|..|+.+..... ..+ ..++.||+||||
T Consensus 330 ~~~tg-~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH 385 (732)
T TIGR00603 330 CRFTS-DAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVH 385 (732)
T ss_pred EEEec-CcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccc
Confidence 42111 111 1223578999999886421111 123 468999999999
No 205
>KOG0331|consensus
Probab=97.04 E-value=0.0046 Score=75.65 Aligned_cols=111 Identities=24% Similarity=0.243 Sum_probs=75.0
Q ss_pred HHhCCEEEEEcCCCCchhc--HHHHHHHHc---cCCCC--CcEEEEecccHHHHHHHHHHHHHHhCCCCC--CeeeEE-e
Q psy1907 682 VRDHQVLIIEGETGSGKTT--QIPQYLHEA---GFTKD--KMKIGCTQPRRVAAMSVSARVAEEMGVKLG--CEVGYA-I 751 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTT--qvPq~l~e~---~~~~~--~~~I~~tQPRRvAA~svA~rva~e~~~~lG--~~VGY~-i 751 (1320)
+....=+|..+.||||||- +||-+.+=. +..+. +-.++|.-|-|=.|..|.+ ++.+.+..++ ..+=|+ +
T Consensus 125 ~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~-~~~~~~~~~~~~~~cvyGG~ 203 (519)
T KOG0331|consen 125 ALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQA-EAREFGKSLRLRSTCVYGGA 203 (519)
T ss_pred eccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHH-HHHHHcCCCCccEEEEeCCC
Confidence 3456778899999999995 578765422 22222 2368999999988888765 4556666665 222221 0
Q ss_pred ecC---ccCCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEcccc
Q psy1907 752 RFE---DCTSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAH 793 (1320)
Q Consensus 752 rfe---~~~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~H 793 (1320)
+-. ......-.|...|-|-|+-.+.... .|++++++|+|||.
T Consensus 204 ~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD 249 (519)
T KOG0331|consen 204 PKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD 249 (519)
T ss_pred CccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH
Confidence 100 0112235699999999999887554 89999999999998
No 206
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.02 E-value=0.015 Score=74.98 Aligned_cols=123 Identities=21% Similarity=0.159 Sum_probs=79.8
Q ss_pred cEEEEecCcC--HHHHHhhcCCCCEEEeCCcccceeEEE---EcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHH
Q psy1907 52 KLLISSATLD--AQKFSEFFDDAPVFRIPGRRFPVDIYY---TKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEI 126 (1320)
Q Consensus 52 qlIl~SATl~--~~~f~~~f~~~~vi~i~g~~~pV~~~y---~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~ei 126 (1320)
++..|+.|.. .+.|.+.+ +-+++.||....-...-+ .-....++..+.+..+...|.. +..|||-+.|.+.-
T Consensus 361 kL~GMTGTa~te~~Ef~~iY-~l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~--grPVLIgT~SIe~S 437 (870)
T CHL00122 361 KLSGMTGTAKTEELEFEKIY-NLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQT--GRPILIGTTTIEKS 437 (870)
T ss_pred hhcccCCCCHHHHHHHHHHh-CCCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhc--CCCEEEeeCCHHHH
Confidence 6777888883 34566666 566777875322111111 1112344566777777777655 35699999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEEEecCCC--CHHHHHHHcCCCCCCCeEEEEeCcccccCCCC
Q psy1907 127 ETCNEILQDRVRRLGSKIKELIILPVYSNL--PTDMQTKIFLPTPPNARKVVLATNIAETSLTI 188 (1320)
Q Consensus 127 e~l~~~L~~~~~~l~~~~~~~~v~~LH~~l--~~~~r~~i~~~~~~g~~kVlvATdIAe~gldI 188 (1320)
|.++.+|.+. ++..-.|++.- ...+-.-|-+.-.+|. |.||||.|.||.||
T Consensus 438 E~ls~~L~~~---------gi~h~vLNAk~~~~~~EA~IIA~AG~~G~--VTIATNMAGRGTDI 490 (870)
T CHL00122 438 ELLSQLLKEY---------RLPHQLLNAKPENVRRESEIVAQAGRKGS--ITIATNMAGRGTDI 490 (870)
T ss_pred HHHHHHHHHc---------CCccceeeCCCccchhHHHHHHhcCCCCc--EEEeccccCCCcCe
Confidence 9999999873 56666677752 2333333334444454 78999999999997
No 207
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=97.00 E-value=0.0021 Score=84.34 Aligned_cols=123 Identities=20% Similarity=0.249 Sum_probs=90.9
Q ss_pred CChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeE
Q psy1907 670 PIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGY 749 (1320)
Q Consensus 670 Pi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY 749 (1320)
..|++..+=++.+.+.+.+||+.+||||||---=.-|++........+-++.=|-+.-|-.=++|+++... .+|..|+.
T Consensus 70 ~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~-~~~~~v~~ 148 (851)
T COG1205 70 RLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELIS-DLPGKVTF 148 (851)
T ss_pred cccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHH-hCCCccee
Confidence 37888899999999999999999999999965333345554444444577888999999999999987654 34445554
Q ss_pred EeecCcc--------CCCCccEEEEccHHHHHHHhcCC-----CCCCccEEEEcccc
Q psy1907 750 AIRFEDC--------TSERTIIKYMTDGTLHREFLSEP-----DLASYSVMIIDEAH 793 (1320)
Q Consensus 750 ~irfe~~--------~s~~T~i~y~TdG~Llrel~~dp-----~L~~ys~iIiDE~H 793 (1320)
.+---|. ......|+++|.-||-..++..- .++....||+||+|
T Consensus 149 ~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElH 205 (851)
T COG1205 149 GRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH 205 (851)
T ss_pred eeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecce
Confidence 4321111 23456799999999998776533 57789999999999
No 208
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.99 E-value=0.00077 Score=83.92 Aligned_cols=98 Identities=20% Similarity=0.283 Sum_probs=65.2
Q ss_pred EEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEee-c---------CccCC
Q psy1907 689 IIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIR-F---------EDCTS 758 (1320)
Q Consensus 689 ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~ir-f---------e~~~s 758 (1320)
+|.|+||||||...-+.+.+. + ..|+.+++.-|.+.-+..+++++.+-+|. .|..-.. . .+..+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l-~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~----~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-L-ALGKSVLVLVPEIALTPQMIQRFKYRFGS----QVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-H-HcCCeEEEEeCcHHHHHHHHHHHHHHhCC----cEEEEECCCCHHHHHHHHHHHHc
Confidence 478999999998764444332 2 23446888889999888888888776553 3331111 0 01122
Q ss_pred CCccEEEEccHHHHHHHhcCCCCCCccEEEEcccccceEE
Q psy1907 759 ERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPKVYV 798 (1320)
Q Consensus 759 ~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER~~V 798 (1320)
.+..|++.|.+.+.. | +.+.+.|||||+|+=.|-
T Consensus 75 g~~~IVVGTrsalf~-----p-~~~l~lIIVDEeh~~syk 108 (505)
T TIGR00595 75 GEILVVIGTRSALFL-----P-FKNLGLIIVDEEHDSSYK 108 (505)
T ss_pred CCCCEEECChHHHcC-----c-ccCCCEEEEECCCccccc
Confidence 356899999886642 3 678899999999965443
No 209
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=96.98 E-value=0.017 Score=70.00 Aligned_cols=182 Identities=14% Similarity=0.121 Sum_probs=120.3
Q ss_pred CCCccEEEEeCCCc-cCcCcchHHHHHHHHhhcCCC---------------------CcEEEEecCcCHHH---HHhhcC
Q psy1907 16 LASYSVMIIDEAHE-RTLHTDILFGLVKDIVRFRSD---------------------LKLLISSATLDAQK---FSEFFD 70 (1320)
Q Consensus 16 Ls~~s~iVLDEaHe-R~l~td~ll~llk~l~~~r~~---------------------~qlIl~SATl~~~~---f~~~f~ 70 (1320)
||.++++|||.||- -+-+=|.+..+++.+-..+++ +|+|++|+..+++. |.+++.
T Consensus 159 LSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~ 238 (442)
T PF06862_consen 159 LSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQ 238 (442)
T ss_pred hheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCc
Confidence 99999999999973 122334555666554433321 79999999998753 333332
Q ss_pred CC-CEEE----------eCCcccceeEEEEcCCccch-------HHHHHHHHHHHHh-hCCCCCEEEEcCCHHHHHHHHH
Q psy1907 71 DA-PVFR----------IPGRRFPVDIYYTKAPEADY-------IDACVVSILQIHA-TQPLGDILVFLTGQEEIETCNE 131 (1320)
Q Consensus 71 ~~-~vi~----------i~g~~~pV~~~y~~~~~~~~-------l~~~i~~v~~i~~-~~~~g~iLVFl~t~~eie~l~~ 131 (1320)
|. -.+. +.....++++.|..-+..+. ++-....++-... ....+.+|||+|+.-+--.+-.
T Consensus 239 N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN 318 (442)
T PF06862_consen 239 NYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRN 318 (442)
T ss_pred CccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHH
Confidence 21 1111 11223456666655333222 1222222332222 4446789999999999988888
Q ss_pred HHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccc--cCCCCCCccEEEcCCCCcccccc
Q psy1907 132 ILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAE--TSLTIDNIIYVIDPGFCKQNNFN 206 (1320)
Q Consensus 132 ~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe--~gldIp~I~~VID~g~~k~~~yd 206 (1320)
.|.+ .++....+|---++.+..++=..|-.|..+|++-|--+= +=..|-||+.||=+|+|..+.|.
T Consensus 319 ~lk~---------~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY 386 (442)
T PF06862_consen 319 YLKK---------ENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFY 386 (442)
T ss_pred HHHh---------cCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHH
Confidence 8875 478888898877888877777789999999999994332 23678999999999998877653
No 210
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=96.98 E-value=0.0025 Score=82.31 Aligned_cols=124 Identities=22% Similarity=0.209 Sum_probs=86.1
Q ss_pred HhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHH--HHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCC
Q psy1907 665 TKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQI--PQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVK 742 (1320)
Q Consensus 665 ~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqv--Pq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~ 742 (1320)
.|+.|-..++--+|+-++.=|+--|....||+|||.-. |-|+. ...+. .+.|.-|-|.-|...|+.+.. +...
T Consensus 75 ~~R~lg~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~--al~G~--~V~VvTpn~yLA~qd~e~m~~-l~~~ 149 (896)
T PRK13104 75 SLRTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLN--AISGR--GVHIVTVNDYLAKRDSQWMKP-IYEF 149 (896)
T ss_pred HHHHcCCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHH--HhcCC--CEEEEcCCHHHHHHHHHHHHH-Hhcc
Confidence 46789999999999999999999999999999999864 55532 22222 366667777655555543332 3456
Q ss_pred CCCeeeEEeecCccC----CCCccEEEEccHHH-HHHHhcCCC-------CCCccEEEEcccc
Q psy1907 743 LGCEVGYAIRFEDCT----SERTIIKYMTDGTL-HREFLSEPD-------LASYSVMIIDEAH 793 (1320)
Q Consensus 743 lG~~VGY~irfe~~~----s~~T~i~y~TdG~L-lrel~~dp~-------L~~ys~iIiDE~H 793 (1320)
+|-+||.-+...+.. .-+..|+|.|.|-| +--|..+.. ...+.++|||||+
T Consensus 150 lGLtv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaD 212 (896)
T PRK13104 150 LGLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVD 212 (896)
T ss_pred cCceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHh
Confidence 788888765543221 12468999999998 333333211 2689999999998
No 211
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=96.91 E-value=0.0038 Score=80.62 Aligned_cols=121 Identities=21% Similarity=0.225 Sum_probs=77.9
Q ss_pred CC--ChhhHHHHHHHHHhCCEEEEEcCCCCchhcHH--HHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCC
Q psy1907 669 LP--IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQI--PQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLG 744 (1320)
Q Consensus 669 LP--i~~~~~~il~~i~~~~v~ii~geTGsGKTTqv--Pq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG 744 (1320)
-| ..++..+++-.+..++-+|..+.||+|||.-. |-++ ......+ .+++ -|-|--|..+|+-+ ..++..+|
T Consensus 89 ~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~--~aL~g~~-v~IV-TpTrELA~Qdae~m-~~L~k~lG 163 (970)
T PRK12899 89 QQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYL--NALTGKP-VHLV-TVNDYLAQRDCEWV-GSVLRWLG 163 (970)
T ss_pred CCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHH--HHhhcCC-eEEE-eCCHHHHHHHHHHH-HHHHhhcC
Confidence 46 77788899999999999999999999999875 5443 2222222 2444 45444444444432 22345677
Q ss_pred CeeeEEeecCccCC----CCccEEEEccHHH-HHHHhcCC-CC-------CCccEEEEccccc
Q psy1907 745 CEVGYAIRFEDCTS----ERTIIKYMTDGTL-HREFLSEP-DL-------ASYSVMIIDEAHP 794 (1320)
Q Consensus 745 ~~VGY~irfe~~~s----~~T~i~y~TdG~L-lrel~~dp-~L-------~~ys~iIiDE~HE 794 (1320)
-.||.-+...+... -+..|+|.|.|=| +-.+.... .+ .++.++|||||..
T Consensus 164 LsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 164 LTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred CeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhh
Confidence 77887655433211 2467999999999 55544331 22 2557999999963
No 212
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=96.88 E-value=0.0027 Score=76.11 Aligned_cols=104 Identities=16% Similarity=0.129 Sum_probs=79.7
Q ss_pred EEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccCCC-------
Q psy1907 687 VLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSE------- 759 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~s~------- 759 (1320)
.++|+-|||=|||+.---.+.. -+...+++|+.+-|-+--+..-|....+-+|-+-++.+-. -..+++
T Consensus 31 NtLvvlPTGLGKT~IA~~V~~~-~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~l----tGev~p~~R~~~w 105 (542)
T COG1111 31 NTLVVLPTGLGKTFIAAMVIAN-RLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAAL----TGEVRPEEREELW 105 (542)
T ss_pred CeEEEecCCccHHHHHHHHHHH-HHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeee----cCCCChHHHHHHH
Confidence 6788999999999876544432 1222233799999999999999999999998766655433 222222
Q ss_pred -CccEEEEccHHHHHHHhcCC-CCCCccEEEEcccccc
Q psy1907 760 -RTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHPK 795 (1320)
Q Consensus 760 -~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HER 795 (1320)
+.+|.++|..++.+-|..-- ++.+++|||+||||-=
T Consensus 106 ~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRA 143 (542)
T COG1111 106 AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRA 143 (542)
T ss_pred hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhc
Confidence 46899999999999998766 8999999999999954
No 213
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.86 E-value=0.0012 Score=72.15 Aligned_cols=58 Identities=21% Similarity=0.349 Sum_probs=37.5
Q ss_pred HHHHHHHHHh-CCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHH
Q psy1907 675 KQDLIDAVRD-HQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSAR 734 (1320)
Q Consensus 675 ~~~il~~i~~-~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~r 734 (1320)
++.+...+.+ +++++|.|+.||||||.+-... +. +...|.+|+.+=|-.-||..+++.
T Consensus 7 ~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~-~~-~~~~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 7 REAVRAILTSGDRVSVLQGPAGTGKTTLLKALA-EA-LEAAGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp HHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHH-HH-HHHTT--EEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHH-HH-HHhCCCeEEEECCcHHHHHHHHHh
Confidence 3344444444 4699999999999999885532 11 111234688888888888776666
No 214
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=96.82 E-value=0.0035 Score=79.91 Aligned_cols=125 Identities=26% Similarity=0.291 Sum_probs=85.8
Q ss_pred HHhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHH--HHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCC
Q psy1907 664 ETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQI--PQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGV 741 (1320)
Q Consensus 664 ~~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqv--Pq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~ 741 (1320)
..++.|-+.++--+++.++.-++-.|....||+|||.-. |-|+.- .. |..+.|.-|-+.-|...|+-+.. +..
T Consensus 48 a~~R~lg~~p~~vQlig~~~l~~G~Iaem~TGeGKTLva~lpa~l~a--L~--G~~V~VvTpt~~LA~qdae~~~~-l~~ 122 (745)
T TIGR00963 48 ASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGEGKTLTATLPAYLNA--LT--GKGVHVVTVNDYLAQRDAEWMGQ-VYR 122 (745)
T ss_pred HHHHHhCCCccchHHhhhhhhcCCceeeecCCCccHHHHHHHHHHHH--Hh--CCCEEEEcCCHHHHHHHHHHHHH-Hhc
Confidence 346677788888899998888888899999999999764 555432 22 22377777888766666654433 345
Q ss_pred CCCCeeeEEeecCcc----CCCCccEEEEccHHH-HHHHhc-------CCCCCCccEEEEcccc
Q psy1907 742 KLGCEVGYAIRFEDC----TSERTIIKYMTDGTL-HREFLS-------EPDLASYSVMIIDEAH 793 (1320)
Q Consensus 742 ~lG~~VGY~irfe~~----~s~~T~i~y~TdG~L-lrel~~-------dp~L~~ys~iIiDE~H 793 (1320)
.+|-.||.-+...+. ..-...|+|.|.|=| +--|.. +-.+.++.++||||||
T Consensus 123 ~LGLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaD 186 (745)
T TIGR00963 123 FLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVD 186 (745)
T ss_pred cCCCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHH
Confidence 678888876654321 122467999999966 222211 2267899999999998
No 215
>KOG0352|consensus
Probab=96.77 E-value=0.0083 Score=70.10 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=27.9
Q ss_pred HHHHHHHHhCCEEEEEcCCCCchhc--HHHHHHHH
Q psy1907 676 QDLIDAVRDHQVLIIEGETGSGKTT--QIPQYLHE 708 (1320)
Q Consensus 676 ~~il~~i~~~~v~ii~geTGsGKTT--qvPq~l~e 708 (1320)
..+.-+++.++-|-|+-|||+|||. |+|-.+.+
T Consensus 27 ~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~ 61 (641)
T KOG0352|consen 27 QAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHG 61 (641)
T ss_pred HHHHHHHhccCcEEEeccCCCchhhhhhchHHHhC
Confidence 4677788999999999999999995 78877654
No 216
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.77 E-value=0.0014 Score=65.07 Aligned_cols=27 Identities=41% Similarity=0.523 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHccC
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAGF 711 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~~ 711 (1320)
++.++|.|++||||||.+-.++...+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 578999999999999999888766543
No 217
>PRK04296 thymidine kinase; Provisional
Probab=96.74 E-value=0.0035 Score=68.19 Aligned_cols=37 Identities=27% Similarity=0.270 Sum_probs=28.0
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecc
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQP 723 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQP 723 (1320)
..+.+|+|++||||||.+=+++..... .+.++++.-|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~--~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE--RGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH--cCCeEEEEec
Confidence 357899999999999999999876532 2445666545
No 218
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=96.71 E-value=0.0026 Score=69.27 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=48.5
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH--HH-HHhhcCC
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA--QK-FSEFFDD 71 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~--~~-f~~~f~~ 71 (1320)
+||+.|++.+.+... +.+++++|+||+|.-. +.++...+...+...+++.+++++|||++. +. ...++++
T Consensus 125 ~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~-~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~ 198 (203)
T cd00268 125 ATPGRLLDLLERGKLDLSKVKYLVLDEADRML-DMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRN 198 (203)
T ss_pred EChHHHHHHHHcCCCChhhCCEEEEeChHHhh-ccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCC
Confidence 589999998877655 8999999999999532 444443333334445668999999999953 33 3445543
No 219
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=96.71 E-value=0.011 Score=74.95 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcH--HHHHHHHccCCCCCcEEEEecccHHHHHHHHH
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQ--IPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSA 733 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTq--vPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~ 733 (1320)
-+.|.+++.+++++++.++||+|||-- +|-..+- ....+.+|+|+-|-+--+..++.
T Consensus 6 ~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~--~~~~~~rvlIstpT~~Lq~Ql~~ 64 (636)
T TIGR03117 6 YLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTML--KERPDQKIAIAVPTLALMGQLWS 64 (636)
T ss_pred HHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHH--HhccCceEEEECCcHHHHHHHHH
Confidence 467888999999999999999999933 3432211 11123568888787666555554
No 220
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.0032 Score=75.00 Aligned_cols=89 Identities=20% Similarity=0.257 Sum_probs=59.1
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcE--EEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccCCC
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMK--IGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSE 759 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~--I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~s~ 759 (1320)
+.++.+++++|+||+||||.+-.+........+..+ ++.+-+=|++|..-.+..++-+|..+
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~---------------- 197 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPV---------------- 197 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCce----------------
Confidence 567899999999999999999887655322222122 34455668899888888888877542
Q ss_pred CccEEEEccHHHHHHHhcCCCCCCccEEEEccc
Q psy1907 760 RTIIKYMTDGTLHREFLSEPDLASYSVMIIDEA 792 (1320)
Q Consensus 760 ~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~ 792 (1320)
....+.+-+...+. .+.++++|+||.+
T Consensus 198 ---~~~~~~~~l~~~l~---~l~~~DlVLIDTa 224 (374)
T PRK14722 198 ---HAVKDGGDLQLALA---ELRNKHMVLIDTI 224 (374)
T ss_pred ---EecCCcccHHHHHH---HhcCCCEEEEcCC
Confidence 11122223333321 3677899999988
No 221
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=96.65 E-value=0.015 Score=74.78 Aligned_cols=132 Identities=16% Similarity=0.128 Sum_probs=88.0
Q ss_pred CCCcEEEEecCcCH-----HHHHhhcCCCCEEEeCCcccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCC-
Q psy1907 49 SDLKLLISSATLDA-----QKFSEFFDDAPVFRIPGRRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTG- 122 (1320)
Q Consensus 49 ~~~qlIl~SATl~~-----~~f~~~f~~~~vi~i~g~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t- 122 (1320)
+.-++|++|||..+ ..|.+.++=.+--...+- ..|...|... +-.+. +..+...-.. -.|||+|.
T Consensus 275 k~g~LvvsSATg~~rg~R~~LfReLlgFevG~~~~~L-RNIvD~y~~~---~~~e~----~~elvk~lG~-GgLIfV~~d 345 (1187)
T COG1110 275 KLGILVVSSATGKPRGSRLKLFRELLGFEVGSGGEGL-RNIVDIYVES---ESLEK----VVELVKKLGD-GGLIFVPID 345 (1187)
T ss_pred CCceEEEeeccCCCCCchHHHHHHHhCCccCccchhh-hheeeeeccC---ccHHH----HHHHHHHhCC-CeEEEEEcH
Confidence 34678999999954 446666641100000111 2333334443 22222 2223333222 37999999
Q ss_pred --HHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEe----CcccccCCCCC-CccEEE
Q psy1907 123 --QEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLA----TNIAETSLTID-NIIYVI 195 (1320)
Q Consensus 123 --~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvA----TdIAe~gldIp-~I~~VI 195 (1320)
++.++.+++.|.+ .++.+..+|+. ..+.++.|..|...|+|. ..++-||||.| -|+|+|
T Consensus 346 ~G~e~aeel~e~Lr~---------~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaI 411 (1187)
T COG1110 346 YGREKAEELAEYLRS---------HGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAV 411 (1187)
T ss_pred HhHHHHHHHHHHHHh---------cCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEE
Confidence 8888888888887 48999999984 256789999999999997 47899999998 689999
Q ss_pred cCCCCccc
Q psy1907 196 DPGFCKQN 203 (1320)
Q Consensus 196 D~g~~k~~ 203 (1320)
=+|.|+.+
T Consensus 412 F~GvPk~r 419 (1187)
T COG1110 412 FYGVPKFR 419 (1187)
T ss_pred EecCCcee
Confidence 99997644
No 222
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=96.63 E-value=0.0019 Score=67.74 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=42.3
Q ss_pred CCHHHHHHHHcCCC-CCCCccEEEEeCCCccCcC--cchHHHHHHHHhhcCCCCcEEEEecCcCHHHHH
Q psy1907 1 MTDGTLHREFLSEP-DLASYSVMIIDEAHERTLH--TDILFGLVKDIVRFRSDLKLLISSATLDAQKFS 66 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~-~Ls~~s~iVLDEaHeR~l~--td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~ 66 (1320)
+||++|++.+.... .+.++++||+||+|..... .+.+..+++.+. ..++.++|+||||+. ..+.
T Consensus 101 ~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~-~~~~~~~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 101 TTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLK-RFKNIQIILLSATLP-SNVE 167 (169)
T ss_dssp EEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSH-TTTTSEEEEEESSST-HHHH
T ss_pred cCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhc-CCCCCcEEEEeeCCC-hhHh
Confidence 48999999988743 3667999999999964432 112222233221 233689999999997 4443
No 223
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.62 E-value=0.0022 Score=76.47 Aligned_cols=90 Identities=20% Similarity=0.290 Sum_probs=48.1
Q ss_pred CEEEEEcCCCCchhcHHHHHHHHcc-CCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccCCCCccEE
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHEAG-FTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSERTIIK 764 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e~~-~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~s~~T~i~ 764 (1320)
+|++|.|.+|||||...=.++.+.. ...+...++++--. --.-.+.+.++.... .......
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~-~l~~~l~~~l~~~~~-----------------~~~~~~~ 63 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNH-PLRNKLREQLAKKYN-----------------PKLKKSD 63 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecc-hHHHHHHHHHhhhcc-----------------cchhhhh
Confidence 5899999999999998887776651 11122223222222 222333444443320 0011111
Q ss_pred EEccHHHHHHH-hcCCCCCCccEEEEcccc
Q psy1907 765 YMTDGTLHREF-LSEPDLASYSVMIIDEAH 793 (1320)
Q Consensus 765 y~TdG~Llrel-~~dp~L~~ys~iIiDE~H 793 (1320)
+..-.-+...+ .++.....|++|||||||
T Consensus 64 ~~~~~~~i~~~~~~~~~~~~~DviivDEAq 93 (352)
T PF09848_consen 64 FRKPTSFINNYSESDKEKNKYDVIIVDEAQ 93 (352)
T ss_pred hhhhHHHHhhcccccccCCcCCEEEEehhH
Confidence 22222222222 355678899999999999
No 224
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=96.61 E-value=0.0036 Score=85.41 Aligned_cols=104 Identities=24% Similarity=0.244 Sum_probs=66.3
Q ss_pred EEcCCCCchhcH--HHHH--HHHccC-------CCCCcEEEEecccHHHHHHHHHHHHH----------HhCC-CCCCee
Q psy1907 690 IEGETGSGKTTQ--IPQY--LHEAGF-------TKDKMKIGCTQPRRVAAMSVSARVAE----------EMGV-KLGCEV 747 (1320)
Q Consensus 690 i~geTGsGKTTq--vPq~--l~e~~~-------~~~~~~I~~tQPRRvAA~svA~rva~----------e~~~-~lG~~V 747 (1320)
|+++||||||.- +|-+ |+.... ..++.++++.-|-|--|..+.+++.. .+|. .+|-.|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999976 3432 222211 12345788889999888888877532 1221 234555
Q ss_pred eEEeecCc------cCCCCccEEEEccHHHHHHHhcC--CCCCCccEEEEcccc
Q psy1907 748 GYAIRFED------CTSERTIIKYMTDGTLHREFLSE--PDLASYSVMIIDEAH 793 (1320)
Q Consensus 748 GY~irfe~------~~s~~T~i~y~TdG~Llrel~~d--p~L~~ys~iIiDE~H 793 (1320)
|-....-+ .......|+++|.+.|.-.|.+. ..|+++.+|||||+|
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H 134 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVH 134 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHH
Confidence 53222111 01234579999999987665543 368999999999999
No 225
>KOG0338|consensus
Probab=96.60 E-value=0.0048 Score=73.53 Aligned_cols=101 Identities=28% Similarity=0.329 Sum_probs=71.5
Q ss_pred EEEcCCCCchhcHHHHHHHHccCCCC----CcEEEEecccHHHHHHHH---HHHHHHhCCCCCCeeeEEeecCccC----
Q psy1907 689 IIEGETGSGKTTQIPQYLHEAGFTKD----KMKIGCTQPRRVAAMSVS---ARVAEEMGVKLGCEVGYAIRFEDCT---- 757 (1320)
Q Consensus 689 ii~geTGsGKTTqvPq~l~e~~~~~~----~~~I~~tQPRRvAA~svA---~rva~e~~~~lG~~VGY~irfe~~~---- 757 (1320)
+=++-||||||--.-.=++|--+-.. -.+|+|.-|-|=-|+.|+ +.+|+=.+- +||..|..=+..
T Consensus 222 ca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I----~~~L~vGGL~lk~QE~ 297 (691)
T KOG0338|consen 222 CACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDI----TVGLAVGGLDLKAQEA 297 (691)
T ss_pred hheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccc----eeeeeecCccHHHHHH
Confidence 44789999999764333444332222 137888899888777554 455654443 455555554432
Q ss_pred --CCCccEEEEccHHHHHHHhcCC--CCCCccEEEEcccc
Q psy1907 758 --SERTIIKYMTDGTLHREFLSEP--DLASYSVMIIDEAH 793 (1320)
Q Consensus 758 --s~~T~i~y~TdG~Llrel~~dp--~L~~ys~iIiDE~H 793 (1320)
-.+..|+..|.|-|+-.|.+.| .|+++-|+|+|||.
T Consensus 298 ~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD 337 (691)
T KOG0338|consen 298 VLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD 337 (691)
T ss_pred HHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH
Confidence 3467799999999999999998 79999999999995
No 226
>KOG0387|consensus
Probab=96.60 E-value=0.016 Score=72.66 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=88.6
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCC--eEEEEeCcccccCCCCCC
Q psy1907 113 LGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNA--RKVVLATNIAETSLTIDN 190 (1320)
Q Consensus 113 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~--~kVlvATdIAe~gldIp~ 190 (1320)
+..+|+|-.++.-++-+-..|.. .+++..+.+-|.-+...|..+.+.|.++. .-.|++|-+...|+++-+
T Consensus 546 g~rvllFsqs~~mLdilE~fL~~--------~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTg 617 (923)
T KOG0387|consen 546 GDRVLLFSQSRQMLDILESFLRR--------AKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTG 617 (923)
T ss_pred CCEEEEehhHHHHHHHHHHHHHh--------cCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEeccccccccccc
Confidence 45799999999988877666653 26899999999999999999999997653 445789999999999988
Q ss_pred ccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHHHh
Q psy1907 191 IIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEVLR 253 (1320)
Q Consensus 191 I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~~ 253 (1320)
.+=||=++. .|||.+ -.++.-|+-|-|-...= .+|||.+....+
T Consensus 618 AnRVIIfDP----dWNPSt-----------D~QAreRawRiGQkkdV----~VYRL~t~gTIE 661 (923)
T KOG0387|consen 618 ANRVIIFDP----DWNPST-----------DNQARERAWRIGQKKDV----VVYRLMTAGTIE 661 (923)
T ss_pred CceEEEECC----CCCCcc-----------chHHHHHHHhhcCccce----EEEEEecCCcHH
Confidence 888874432 355444 46777788888877553 899998865443
No 227
>KOG0953|consensus
Probab=96.58 E-value=0.0092 Score=72.04 Aligned_cols=94 Identities=26% Similarity=0.265 Sum_probs=57.6
Q ss_pred CEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccCCCCccEEE
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSERTIIKY 765 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~s~~T~i~y 765 (1320)
.++.=+|||.||||--.=|-+.++- .| |+ .=|-|+-|..|+.|+-+ .|....-..|=-++|.---+.....+=
T Consensus 192 kIi~H~GPTNSGKTy~ALqrl~~ak---sG--vy-cGPLrLLA~EV~~r~na-~gipCdL~TGeE~~~~~~~~~~a~hvS 264 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRALQRLKSAK---SG--VY-CGPLRLLAHEVYDRLNA-LGIPCDLLTGEERRFVLDNGNPAQHVS 264 (700)
T ss_pred eEEEEeCCCCCchhHHHHHHHhhhc---cc--ee-cchHHHHHHHHHHHhhh-cCCCccccccceeeecCCCCCcccceE
Confidence 4577899999999988777776542 22 44 45999999999999854 455443333333333332233334444
Q ss_pred EccHHHHHHHhcCCCCCCccEEEEcccc
Q psy1907 766 MTDGTLHREFLSEPDLASYSVMIIDEAH 793 (1320)
Q Consensus 766 ~TdG~Llrel~~dp~L~~ys~iIiDE~H 793 (1320)
||-.|. +.-.-|.|.||||+.
T Consensus 265 cTVEM~-------sv~~~yeVAViDEIQ 285 (700)
T KOG0953|consen 265 CTVEMV-------SVNTPYEVAVIDEIQ 285 (700)
T ss_pred EEEEEe-------ecCCceEEEEehhHH
Confidence 555442 122457777777776
No 228
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=96.55 E-value=0.0082 Score=77.62 Aligned_cols=131 Identities=25% Similarity=0.285 Sum_probs=90.1
Q ss_pred HhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHH--HHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCC
Q psy1907 665 TKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQI--PQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVK 742 (1320)
Q Consensus 665 ~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqv--Pq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~ 742 (1320)
.++.|-++++--+++.++.-++-.|....||+|||.-. |.++.- .. |..+.+.-|-+.-|...++.+.. +...
T Consensus 71 ~~R~~g~~p~~vQl~~~~~l~~G~Iaem~TGeGKTL~a~lp~~l~a--l~--G~~v~VvTpt~~LA~qd~e~~~~-l~~~ 145 (790)
T PRK09200 71 AKRVLGMRPYDVQLIGALVLHEGNIAEMQTGEGKTLTATMPLYLNA--LE--GKGVHLITVNDYLAKRDAEEMGQ-VYEF 145 (790)
T ss_pred HHHHhCCCCchHHHHhHHHHcCCceeeecCCCcchHHHHHHHHHHH--Hc--CCCeEEEeCCHHHHHHHHHHHHH-HHhh
Confidence 45677788888899998888888899999999999765 555432 22 33467777877766666655332 3455
Q ss_pred CCCeeeEEeecCcc-----CCCCccEEEEccHHH----HHH-HhcCC---CCCCccEEEEcccccceEEEcCC
Q psy1907 743 LGCEVGYAIRFEDC-----TSERTIIKYMTDGTL----HRE-FLSEP---DLASYSVMIIDEAHPKVYVIDPG 802 (1320)
Q Consensus 743 lG~~VGY~irfe~~-----~s~~T~i~y~TdG~L----lre-l~~dp---~L~~ys~iIiDE~HER~~ViD~G 802 (1320)
+|-+||.-+...+. ..-...|+|.|.|=| ||. +...+ .+.+..++|||||| ...||-.
T Consensus 146 lGl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaD--siLiDea 216 (790)
T PRK09200 146 LGLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEID--SILLDEA 216 (790)
T ss_pred cCCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccc--cceeccC
Confidence 78888876655441 112467999999877 444 33222 67889999999998 4566643
No 229
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.55 E-value=0.006 Score=70.56 Aligned_cols=60 Identities=25% Similarity=0.319 Sum_probs=43.5
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHHccCC-C-CCcEEEEecccHHHHHHHHHHHHHHhCCC
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHEAGFT-K-DKMKIGCTQPRRVAAMSVSARVAEEMGVK 742 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e~~~~-~-~~~~I~~tQPRRvAA~svA~rva~e~~~~ 742 (1320)
....+++|+|+||+||||.+-.+....... + ....++.+-|-|++|..-....+..+|+.
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p 253 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVP 253 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCc
Confidence 456799999999999999998776543222 1 12246678888999887777777776654
No 230
>PRK09694 helicase Cas3; Provisional
Probab=96.49 E-value=0.0072 Score=79.32 Aligned_cols=55 Identities=25% Similarity=0.196 Sum_probs=39.6
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAE 737 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~ 737 (1320)
.+...+||.++||||||--.=.+.+...-.+...+|+++-|++..|-.+..|+.+
T Consensus 299 ~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~ 353 (878)
T PRK09694 299 LQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEA 353 (878)
T ss_pred cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHH
Confidence 3578899999999999977522222110011223699999999999999999875
No 231
>KOG0947|consensus
Probab=96.39 E-value=0.012 Score=74.80 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEee
Q psy1907 673 PFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIR 752 (1320)
Q Consensus 673 ~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~ir 752 (1320)
.+..+-+.+++.+.-|.|.+.|.||||-..--.+.=+ ...+.+-+.|-| |-|.|--+. .+...+.| .|| -+.
T Consensus 300 ~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala--q~h~TR~iYTSP--IKALSNQKf--RDFk~tF~-Dvg-LlT 371 (1248)
T KOG0947|consen 300 TFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA--QKHMTRTIYTSP--IKALSNQKF--RDFKETFG-DVG-LLT 371 (1248)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH--HhhccceEecch--hhhhccchH--HHHHHhcc-ccc-eee
Confidence 3455667788999999999999999985443332211 122346778888 444443332 22222332 366 678
Q ss_pred cCccCCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEcccc
Q psy1907 753 FEDCTSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAH 793 (1320)
Q Consensus 753 fe~~~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~H 793 (1320)
.|-..++...+..||+.||-.+|-... .++++..||+||||
T Consensus 372 GDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVH 413 (1248)
T KOG0947|consen 372 GDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH 413 (1248)
T ss_pred cceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeee
Confidence 888889999999999999988886655 56789999999999
No 232
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.36 E-value=0.0047 Score=68.06 Aligned_cols=64 Identities=20% Similarity=0.346 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHc------cCCCCCcEEEEecccHHHHHHHHHHHHH
Q psy1907 674 FKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEA------GFTKDKMKIGCTQPRRVAAMSVSARVAE 737 (1320)
Q Consensus 674 ~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~------~~~~~~~~I~~tQPRRvAA~svA~rva~ 737 (1320)
++..|..++.++.+++|.||+|+||||-+...+... .....+.+|+++-|--.|+-.+..++.+
T Consensus 6 Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 6 QREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 345555555555569999999999999999887765 1234456799999999999999999876
No 233
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.35 E-value=0.008 Score=72.31 Aligned_cols=59 Identities=31% Similarity=0.404 Sum_probs=46.0
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHHccCCCC-CcEEEEecccHHHHHHHHHHHHHHhCCC
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHEAGFTKD-KMKIGCTQPRRVAAMSVSARVAEEMGVK 742 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~-~~~I~~tQPRRvAA~svA~rva~e~~~~ 742 (1320)
...+++|+|+|||||||++-++........+ ...++.+-+-|.+|....++.|+.+|..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp 281 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMP 281 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCC
Confidence 4568999999999999999999865432222 1235668899999999999999888764
No 234
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.0084 Score=73.82 Aligned_cols=71 Identities=25% Similarity=0.388 Sum_probs=45.8
Q ss_pred HhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcE--EEEecccHHHHHHHHHHHHHHhC
Q psy1907 665 TKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMK--IGCTQPRRVAAMSVSARVAEEMG 740 (1320)
Q Consensus 665 ~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~--I~~tQPRRvAA~svA~rva~e~~ 740 (1320)
-.+.||+... +.+..+++++|+|+||+||||.+-.+.........+.+ ++.+-+-|+++.......+..+|
T Consensus 335 L~~~l~v~~~-----~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLg 407 (559)
T PRK12727 335 LSKRLPVAPV-----DPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLG 407 (559)
T ss_pred HHHhcCcCcc-----ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccC
Confidence 3455676543 44667999999999999999999777654322221222 44566778887665555544433
No 235
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.33 E-value=0.009 Score=75.84 Aligned_cols=67 Identities=21% Similarity=0.279 Sum_probs=49.4
Q ss_pred hhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHc--cCCCCCcEEEEecccHHHHHHHHHHHHHHh
Q psy1907 672 YPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEA--GFTKDKMKIGCTQPRRVAAMSVSARVAEEM 739 (1320)
Q Consensus 672 ~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~--~~~~~~~~I~~tQPRRvAA~svA~rva~e~ 739 (1320)
..+|..+..++ .++++||+|++|+||||.|-.+|... -....+..|+++-|..-||..+.+++...+
T Consensus 155 d~Qk~Av~~a~-~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~ 223 (615)
T PRK10875 155 DWQKVAAAVAL-TRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKAL 223 (615)
T ss_pred HHHHHHHHHHh-cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhh
Confidence 45666666665 47899999999999999998776432 111123579999999999988888776533
No 236
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.012 Score=70.89 Aligned_cols=88 Identities=23% Similarity=0.332 Sum_probs=58.4
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHHccCC--CCCc--EEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccCCC
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHEAGFT--KDKM--KIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSE 759 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e~~~~--~~~~--~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~s~ 759 (1320)
...+++++|+||+||||-+-.+....... ..+. .++.+-+-|++|..--+..|+-+|.++ .+++
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv--~~~~---------- 240 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV--KAIE---------- 240 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce--EeeC----------
Confidence 35799999999999999997765432211 1222 356688889999988888888787654 1111
Q ss_pred CccEEEEccHHHHHHHhcCCCCCCccEEEEcccc
Q psy1907 760 RTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAH 793 (1320)
Q Consensus 760 ~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~H 793 (1320)
+..-+...+. .+.+|++||||++.
T Consensus 241 -------~~~~l~~~L~---~~~~~DlVLIDTaG 264 (388)
T PRK12723 241 -------SFKDLKEEIT---QSKDFDLVLVDTIG 264 (388)
T ss_pred -------cHHHHHHHHH---HhCCCCEEEEcCCC
Confidence 1112222221 25789999999994
No 237
>PRK10536 hypothetical protein; Provisional
Probab=96.31 E-value=0.0064 Score=68.65 Aligned_cols=55 Identities=27% Similarity=0.299 Sum_probs=42.3
Q ss_pred CChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEeccc
Q psy1907 670 PIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPR 724 (1320)
Q Consensus 670 Pi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPR 724 (1320)
|.......+++++.++.+++++|++|||||+..-.+.++.-..+.-.+|+++.|-
T Consensus 59 p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~ 113 (262)
T PRK10536 59 ARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPV 113 (262)
T ss_pred CCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 4455566788899999999999999999999998877654322223479999983
No 238
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.29 E-value=0.02 Score=69.82 Aligned_cols=61 Identities=23% Similarity=0.307 Sum_probs=43.2
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCc--EEEEecccHHHHHHHHHHHHHHhCCC
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKM--KIGCTQPRRVAAMSVSARVAEEMGVK 742 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~--~I~~tQPRRvAA~svA~rva~e~~~~ 742 (1320)
+..+.+++++|+||+||||-+-.+........++. -++.+-|-|++|.......++.+|.+
T Consensus 218 ~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp 280 (424)
T PRK05703 218 LKQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIP 280 (424)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCc
Confidence 34567999999999999999887755432112222 34557788999987777778777654
No 239
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.28 E-value=0.028 Score=73.28 Aligned_cols=187 Identities=10% Similarity=0.051 Sum_probs=108.8
Q ss_pred CcEEEEecCc-CHHHHHhhcCC-CCEEEeCCcccc-----------------eeEEEEcCCccchHHHHHHHHHHHHhhC
Q psy1907 51 LKLLISSATL-DAQKFSEFFDD-APVFRIPGRRFP-----------------VDIYYTKAPEADYIDACVVSILQIHATQ 111 (1320)
Q Consensus 51 ~qlIl~SATl-~~~~f~~~f~~-~~vi~i~g~~~p-----------------V~~~y~~~~~~~~l~~~i~~v~~i~~~~ 111 (1320)
..+|++|||+ +.+.|.+.++- .+.....+..+| ....|......+++..+...+..+....
T Consensus 442 ~svil~SgTL~p~~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~~~ 521 (705)
T TIGR00604 442 RSVILASGTLSPLDAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKII 521 (705)
T ss_pred CEEEEecccCCcHHHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhhcC
Confidence 4699999999 55778877752 222111111111 1112222222457777777777777665
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHH--HHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCC----CCCeEEEEeC--cccc
Q psy1907 112 PLGDILVFLTGQEEIETCNEILQDR--VRRLGSKIKELIILPVYSNLPTDMQTKIFLPTP----PNARKVVLAT--NIAE 183 (1320)
Q Consensus 112 ~~g~iLVFl~t~~eie~l~~~L~~~--~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~----~g~~kVlvAT--dIAe 183 (1320)
||.+|||+|+....+.+.+.+.+. ...+.. ...+-+-+- ++ .++..+++.|. .|.-.|++|+ ....
T Consensus 522 -pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~-~k~i~~E~~-~~---~~~~~~l~~f~~~~~~~~gavL~av~gGk~s 595 (705)
T TIGR00604 522 -PDGIVVFFPSYSYLENIVSTWKEMGILENIEK-KKLIFVETK-DA---QETSDALERYKQAVSEGRGAVLLSVAGGKVS 595 (705)
T ss_pred -CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhc-CCCEEEeCC-Cc---chHHHHHHHHHHHHhcCCceEEEEecCCccc
Confidence 688999999999999998887642 111110 112222221 11 34556666663 2455699999 7888
Q ss_pred cCCCCCC--ccEEEcCCCCccccccCCCCc--c----------c-cceeccCHhhHHHHhhhcCCCCCCCCceEEEE
Q psy1907 184 TSLTIDN--IIYVIDPGFCKQNNFNSRTGM--E----------S-LTVVPISKASANQRAGVITGFNPLSDFRGCAH 245 (1320)
Q Consensus 184 ~gldIp~--I~~VID~g~~k~~~yd~~~g~--~----------~-l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~ 245 (1320)
=|||++| .+.||=.|+|.....++.... . . ........-...|=+||+=|...+ ||..+.
T Consensus 596 EGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D--~G~iil 670 (705)
T TIGR00604 596 EGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDD--YGSIVL 670 (705)
T ss_pred CccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCc--eEEEEE
Confidence 8999976 688888898764333322110 0 0 111222334567888999888776 364443
No 240
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=96.27 E-value=0.02 Score=65.80 Aligned_cols=114 Identities=19% Similarity=0.273 Sum_probs=85.4
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhC-CCCCCeeeEEeec
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMG-VKLGCEVGYAIRF 753 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~-~~lG~~VGY~irf 753 (1320)
.+.+++.|.+..-++|-+-||||||--|=|-+-.+ .+.|.+|++.-||-=.+..++.|+.+-.. +.+ ..=| .
T Consensus 106 s~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~a--l~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I--~~Ly---g 178 (441)
T COG4098 106 SNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQA--LNQGGRVCIASPRVDVCLELYPRLKQAFSNCDI--DLLY---G 178 (441)
T ss_pred HHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHH--HhcCCeEEEecCcccchHHHHHHHHHhhccCCe--eeEe---c
Confidence 36789999999999999999999998876655332 22345799999999999999999988764 332 1111 1
Q ss_pred CccCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEcccccceEEEcC
Q psy1907 754 EDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPKVYVIDP 801 (1320)
Q Consensus 754 e~~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER~~ViD~ 801 (1320)
|+..--++.++.+|+--|+|-- ..++++|||||.-=.|+-|.
T Consensus 179 ~S~~~fr~plvVaTtHQLlrFk------~aFD~liIDEVDAFP~~~d~ 220 (441)
T COG4098 179 DSDSYFRAPLVVATTHQLLRFK------QAFDLLIIDEVDAFPFSDDQ 220 (441)
T ss_pred CCchhccccEEEEehHHHHHHH------hhccEEEEeccccccccCCH
Confidence 2222235889999999999973 56899999999766566553
No 241
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.25 E-value=0.011 Score=70.55 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=39.8
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHccCCCCCcE--EEEecccHHHHHHHHHHHHHHhCCC
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMK--IGCTQPRRVAAMSVSARVAEEMGVK 742 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~--I~~tQPRRvAA~svA~rva~e~~~~ 742 (1320)
..++.|+|+|||||||-+-.+.... ...|.+ ++-+-|-|++|+.--+..|+.+|.+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L--~~~GkkVglI~aDt~RiaAvEQLk~yae~lgip 298 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFE 298 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH--HHcCCcEEEEecCCcchHHHHHHHHHhhhcCCc
Confidence 4789999999999999997765432 122322 4556788998887766667666644
No 242
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.24 E-value=0.022 Score=74.99 Aligned_cols=114 Identities=21% Similarity=0.334 Sum_probs=74.4
Q ss_pred HHHHHHHHhCCEEEEEcCCCCchhcH--HHHHHHHccCCCCCcEEEEecccHHHHHHHH-H---HHHHHhCCCC------
Q psy1907 676 QDLIDAVRDHQVLIIEGETGSGKTTQ--IPQYLHEAGFTKDKMKIGCTQPRRVAAMSVS-A---RVAEEMGVKL------ 743 (1320)
Q Consensus 676 ~~il~~i~~~~v~ii~geTGsGKTTq--vPq~l~e~~~~~~~~~I~~tQPRRvAA~svA-~---rva~e~~~~l------ 743 (1320)
+.|.+++.++..+++.++||+|||.- +| +|... .+++++|.-|-|.-+..+. + .+++-++.+.
T Consensus 255 ~~V~~~l~~~~~~~~eA~tGtGKT~ayllp-~l~~~----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~~~~~~~~~kg~ 329 (820)
T PRK07246 255 KLVGEDFHDGPASFIEAQTGIGKTYGYLLP-LLAQS----DQRQIIVSVPTKILQDQIMAEEVKAIQEVFHIDCHSLKGP 329 (820)
T ss_pred HHHHHHHhCCCcEEEECCCCCcHHHHHHHH-HHHhc----CCCcEEEEeCcHHHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 46778889999999999999999975 56 23221 2456888888887777663 2 2232222211
Q ss_pred --------------------------------------CC------eeeEE-----eecCccCC----------------
Q psy1907 744 --------------------------------------GC------EVGYA-----IRFEDCTS---------------- 758 (1320)
Q Consensus 744 --------------------------------------G~------~VGY~-----irfe~~~s---------------- 758 (1320)
|. ..+++ |+.+.+.+
T Consensus 330 ~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~cp~~~~cf~~~ar~ 409 (820)
T PRK07246 330 QNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSSLFYDYDFWKRSYE 409 (820)
T ss_pred cccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCCCcchhhHHHHHHH
Confidence 10 01111 11121111
Q ss_pred --CCccEEEEccHHHHHHHhcCCCCCCccEEEEccccc
Q psy1907 759 --ERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 759 --~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HE 794 (1320)
.+..|+.+-.-+|+..+..++.+..|+++||||||.
T Consensus 410 ~a~~AdivItNHall~~~~~~~~~~p~~~~lIiDEAH~ 447 (820)
T PRK07246 410 KAKTARLLITNHAYFLTRVQDDKDFARNKVLVFDEAQK 447 (820)
T ss_pred HHHhCCEEEEchHHHHHHHhhccCCCCCCEEEEECcch
Confidence 134588888889999888888899999999999995
No 243
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=96.19 E-value=0.021 Score=71.60 Aligned_cols=126 Identities=21% Similarity=0.296 Sum_probs=79.8
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcH--HHHH--HHHccCCCCCcE-EEEecccHHHHHHHHHHHHHHhCCCC-CCeee
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQ--IPQY--LHEAGFTKDKMK-IGCTQPRRVAAMSVSARVAEEMGVKL-GCEVG 748 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTq--vPq~--l~e~~~~~~~~~-I~~tQPRRvAA~svA~rva~e~~~~l-G~~VG 748 (1320)
...-+-.+..++-+++.+.||||||-- +|-+ |... ...... .++.-|.|=.|+.+++-+.. ++... +-.|.
T Consensus 56 Q~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~--~~~~~~~aLil~PTRELA~Qi~~~~~~-~~~~~~~~~~~ 132 (513)
T COG0513 56 QLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS--VERKYVSALILAPTRELAVQIAEELRK-LGKNLGGLRVA 132 (513)
T ss_pred HHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc--cccCCCceEEECCCHHHHHHHHHHHHH-HHhhcCCccEE
Confidence 344555666778899999999999754 4533 2111 111111 67888999888887765433 22222 22233
Q ss_pred EEeecCccC------CCCccEEEEccHHHHHHHhcC-CCCCCccEEEEcccccceEEEcCCccce
Q psy1907 749 YAIRFEDCT------SERTIIKYMTDGTLHREFLSE-PDLASYSVMIIDEAHPKVYVIDPGFCKQ 806 (1320)
Q Consensus 749 Y~irfe~~~------s~~T~i~y~TdG~Llrel~~d-p~L~~ys~iIiDE~HER~~ViD~G~~k~ 806 (1320)
.-+...+.. .....|++.|.|-|+..+... -.|+++.++|+|||.+ ..|-||...
T Consensus 133 ~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr---mLd~Gf~~~ 194 (513)
T COG0513 133 VVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR---MLDMGFIDD 194 (513)
T ss_pred EEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh---hhcCCCHHH
Confidence 333333211 224789999999999777666 3899999999999965 345565543
No 244
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.19 E-value=0.019 Score=74.58 Aligned_cols=64 Identities=28% Similarity=0.397 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhC
Q psy1907 673 PFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMG 740 (1320)
Q Consensus 673 ~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~ 740 (1320)
....+.+..+.++++++|+|++|+||||.+-.++.-..-..+...|+++-|--.||. |+++..|
T Consensus 326 ~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~----~L~e~~g 389 (720)
T TIGR01448 326 EEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAK----RLGEVTG 389 (720)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHH----HHHHhcC
Confidence 333445555678889999999999999998665432111111146888889887775 5554443
No 245
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.19 E-value=0.0072 Score=69.23 Aligned_cols=44 Identities=36% Similarity=0.440 Sum_probs=31.5
Q ss_pred HHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEec
Q psy1907 677 DLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQ 722 (1320)
Q Consensus 677 ~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQ 722 (1320)
-+..+++.+..++|+|+|||||||++-.++.+-. ....+|++.+
T Consensus 119 ~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~--~~~~~iv~iE 162 (270)
T PF00437_consen 119 FLRSAVRGRGNILISGPTGSGKTTLLNALLEEIP--PEDERIVTIE 162 (270)
T ss_dssp HHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCH--TTTSEEEEEE
T ss_pred HHhhccccceEEEEECCCccccchHHHHHhhhcc--ccccceEEec
Confidence 3444567789999999999999999976665432 2234666665
No 246
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.17 E-value=0.014 Score=73.87 Aligned_cols=64 Identities=23% Similarity=0.321 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHH---ccCCCCCcEEEEecccHHHHHHHHHHHHHH
Q psy1907 674 FKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHE---AGFTKDKMKIGCTQPRRVAAMSVSARVAEE 738 (1320)
Q Consensus 674 ~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e---~~~~~~~~~I~~tQPRRvAA~svA~rva~e 738 (1320)
+|..+..+ ..+++++|+|++|+||||.|-..|.. .+-..++.+|+++=|---||..+.+.+...
T Consensus 150 Qk~A~~~a-l~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 150 QKVAVALA-LKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred HHHHHHHH-hhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhh
Confidence 34444444 45799999999999999998877532 211111236999999999988777776554
No 247
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.15 E-value=0.024 Score=67.44 Aligned_cols=88 Identities=27% Similarity=0.353 Sum_probs=63.1
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHHccCCCC--CcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccCCCC
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHEAGFTKD--KMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSER 760 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~--~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~s~~ 760 (1320)
.++.|+.++||||.||||-+-..-.-..+..+ +-.|+-|--=||+|..==+.-|+-||+++
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~----------------- 263 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL----------------- 263 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce-----------------
Confidence 34899999999999999999776544442232 23467789999999999999999999873
Q ss_pred ccEEEEccHHHHHHHhcCCCCCCccEEEEccc
Q psy1907 761 TIIKYMTDGTLHREFLSEPDLASYSVMIIDEA 792 (1320)
Q Consensus 761 T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~ 792 (1320)
+.+.+.-=+.+-+. .|.+|++|.||=+
T Consensus 264 ---~vv~~~~el~~ai~--~l~~~d~ILVDTa 290 (407)
T COG1419 264 ---EVVYSPKELAEAIE--ALRDCDVILVDTA 290 (407)
T ss_pred ---EEecCHHHHHHHHH--HhhcCCEEEEeCC
Confidence 44444433332222 4778888888855
No 248
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.13 E-value=0.024 Score=72.40 Aligned_cols=104 Identities=25% Similarity=0.316 Sum_probs=69.3
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccCC--CC
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTS--ER 760 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~s--~~ 760 (1320)
..+.|++|-++.||||||++-.||-+. ....+.+|++.==||--+.+++.|..... +..-|-|.---+.... +.
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~-l~~~~~~VLvVShRrSL~~sL~~rf~~~~---l~gFv~Y~d~~~~~i~~~~~ 122 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDA-LKNPDKSVLVVSHRRSLTKSLAERFKKAG---LSGFVNYLDSDDYIIDGRPY 122 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHh-ccCCCCeEEEEEhHHHHHHHHHHHHhhcC---CCcceeeecccccccccccc
Confidence 357899999999999999998888764 12334468888889999999999986532 1112222211111111 23
Q ss_pred ccEEEEccHHHHHHHhcCCCCCCccEEEEcccc
Q psy1907 761 TIIKYMTDGTLHREFLSEPDLASYSVMIIDEAH 793 (1320)
Q Consensus 761 T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~H 793 (1320)
.++..+-|-+ .|- ..+.+.+|++||||||-
T Consensus 123 ~rLivqIdSL-~R~--~~~~l~~yDvVIIDEv~ 152 (824)
T PF02399_consen 123 DRLIVQIDSL-HRL--DGSLLDRYDVVIIDEVM 152 (824)
T ss_pred CeEEEEehhh-hhc--ccccccccCEEEEehHH
Confidence 5677776654 332 24578899999999996
No 249
>PRK14974 cell division protein FtsY; Provisional
Probab=96.08 E-value=0.014 Score=68.81 Aligned_cols=57 Identities=28% Similarity=0.403 Sum_probs=40.4
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEE--EEecccHHHHHHHHHHHHHHhCCCC
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKI--GCTQPRRVAAMSVSARVAEEMGVKL 743 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I--~~tQPRRvAA~svA~rva~e~~~~l 743 (1320)
..+++++|++|+||||.+-.+.... ...|.+| +.+-+-|.+|+.-.+..++.+|.++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l--~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v 198 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYL--KKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKV 198 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH--HHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCce
Confidence 4699999999999999876554321 1122233 4456789999888888888888653
No 250
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.97 E-value=0.084 Score=68.62 Aligned_cols=179 Identities=14% Similarity=0.155 Sum_probs=106.2
Q ss_pred CcEEEEecCcCH-HHH---HhhcC-C----CCEEEeCCcccce---eEEEEc----C--CccchHHHHHHHHHHHHhhCC
Q psy1907 51 LKLLISSATLDA-QKF---SEFFD-D----APVFRIPGRRFPV---DIYYTK----A--PEADYIDACVVSILQIHATQP 112 (1320)
Q Consensus 51 ~qlIl~SATl~~-~~f---~~~f~-~----~~vi~i~g~~~pV---~~~y~~----~--~~~~~l~~~i~~v~~i~~~~~ 112 (1320)
..+|++|||+.+ ..| .+-+| + ...+.++ ..|+- ...|.. . ...+|.+.+...+..+.. .
T Consensus 457 ~~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~-SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~-~- 533 (697)
T PRK11747 457 PGAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALP-SPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLE-K- 533 (697)
T ss_pred CEEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcC-CCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHh-c-
Confidence 468999999965 334 33233 1 2233333 23332 223332 1 234577777888887776 3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcC----CCCCCCeEEEEeCcccccCCCC
Q psy1907 113 LGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFL----PTPPNARKVVLATNIAETSLTI 188 (1320)
Q Consensus 113 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~----~~~~g~~kVlvATdIAe~gldI 188 (1320)
+|.+|||+|+.+..+.++..|.... +.. +..+|..+ +.++++ .|..|...|+++|.-..-|||+
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~--------~~~-ll~Q~~~~---~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~ 601 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDL--------RLM-LLVQGDQP---RQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDL 601 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhc--------CCc-EEEeCCch---HHHHHHHHHHHhccCCCeEEEEeccccccccC
Confidence 5569999999999999999887531 122 23356432 344553 3345677899999999999999
Q ss_pred CC--ccEEEcCCCCccccccCC----------CCccccc--eeccCHhhHHHHhhhcCCCCCCCCceEEEEe
Q psy1907 189 DN--IIYVIDPGFCKQNNFNSR----------TGMESLT--VVPISKASANQRAGVITGFNPLSDFRGCAHV 246 (1320)
Q Consensus 189 p~--I~~VID~g~~k~~~yd~~----------~g~~~l~--~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L 246 (1320)
|| .+.||=.++|-..--+|- .|-+... ..|-..-...|=+||.=|....+ |..+.+
T Consensus 602 pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~--G~i~il 671 (697)
T PRK11747 602 PGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDR--GRVTIL 671 (697)
T ss_pred CCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCce--EEEEEE
Confidence 86 788887777543211111 1111111 12334455788889988876552 555444
No 251
>PF13173 AAA_14: AAA domain
Probab=95.97 E-value=0.018 Score=58.28 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=23.6
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
++++++|.|+.||||||.+=|++.+..
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 578999999999999999999986543
No 252
>KOG1803|consensus
Probab=95.95 E-value=0.015 Score=71.30 Aligned_cols=60 Identities=27% Similarity=0.431 Sum_probs=45.7
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHH
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVA 736 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva 736 (1320)
+..+--++.+..+.+|.||||.|||+-+--.|...- ..+++|+|+-|-.+|.-.+-.|.+
T Consensus 191 k~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlv--k~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 191 KAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLV--KQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred HHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHH--HcCCeEEEEcCchHHHHHHHHHhc
Confidence 344444555558999999999999998876665432 234689999999999999888754
No 253
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.84 E-value=0.013 Score=69.50 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=43.0
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCC
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGV 741 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~ 741 (1320)
+....+++|+|+|||||||.+-.+-......+....++.+-|=|++|+.-=+..|+.+|.
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgv 262 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV 262 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCC
Confidence 456889999999999999998776543311111223567888899998877777776664
No 254
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.83 E-value=0.021 Score=59.63 Aligned_cols=47 Identities=30% Similarity=0.467 Sum_probs=32.6
Q ss_pred EEEEcCCCCchhcHHHHH---HHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeec
Q psy1907 688 LIIEGETGSGKTTQIPQY---LHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRF 753 (1320)
Q Consensus 688 ~ii~geTGsGKTTqvPq~---l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irf 753 (1320)
+.|+|++|+||||.+-.. |-+.||.-+| ++|-.=| .-|..+||.|..
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG--f~t~EVR-----------------~gGkR~GF~Ivd 57 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGG--FITPEVR-----------------EGGKRIGFKIVD 57 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcCceeee--EEeeeee-----------------cCCeEeeeEEEE
Confidence 789999999999998654 4456665444 5554433 237788988763
No 255
>PRK06526 transposase; Provisional
Probab=95.80 E-value=0.0066 Score=69.08 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=23.1
Q ss_pred HHHHhCCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 680 DAVRDHQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 680 ~~i~~~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
+.++.++.++|+|++|+|||+..--...+
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHH
Confidence 34567889999999999999887655444
No 256
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.75 E-value=0.018 Score=65.55 Aligned_cols=32 Identities=34% Similarity=0.513 Sum_probs=24.3
Q ss_pred HHHHHHh-CCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 678 LIDAVRD-HQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 678 il~~i~~-~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
+...+.. ..+++|+|++||||||.+=.++.+.
T Consensus 35 l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 35 LEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred HHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 3344554 4489999999999999998876553
No 257
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.74 E-value=0.091 Score=70.51 Aligned_cols=185 Identities=15% Similarity=0.197 Sum_probs=109.8
Q ss_pred CcEEEEecCcCH----HHHHhhcCCC----CEEEeCCcccce---eEEEEc--CC------ccchHHHHHHHHHHHHhhC
Q psy1907 51 LKLLISSATLDA----QKFSEFFDDA----PVFRIPGRRFPV---DIYYTK--AP------EADYIDACVVSILQIHATQ 111 (1320)
Q Consensus 51 ~qlIl~SATl~~----~~f~~~f~~~----~vi~i~g~~~pV---~~~y~~--~~------~~~~l~~~i~~v~~i~~~~ 111 (1320)
..+|++|||+.+ +.|.+-+|-. ..+.++. +|+- ...|.. .| ..+|.+.+...+..+....
T Consensus 673 ~~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~S-pF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l~~~~ 751 (928)
T PRK08074 673 KSVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPS-PFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKIAKAT 751 (928)
T ss_pred CcEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCC-CCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHHHHhC
Confidence 568999999953 3344445421 1233332 2332 112222 12 2466777777777765444
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCC-
Q psy1907 112 PLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDN- 190 (1320)
Q Consensus 112 ~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~- 190 (1320)
+|.+|||+|+.+..+.+++.|..... ..++.++. + ++....|.++.+.|+.+...||++|.--.-|||+||
T Consensus 752 -~g~~LVLFtSy~~l~~v~~~l~~~~~-----~~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~ 823 (928)
T PRK08074 752 -KGRMLVLFTSYEMLKKTYYNLKNEEE-----LEGYVLLA-Q-GVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGD 823 (928)
T ss_pred -CCCEEEEECCHHHHHHHHHHHhhccc-----ccCceEEe-c-CCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCC
Confidence 68999999999999999999875321 01222222 2 333334566777777788889999999999999987
Q ss_pred -ccEEEcCCCCcccc----------ccCCCCcccc--ceeccCHhhHHHHhhhcCCCCCCCCceEEEEe
Q psy1907 191 -IIYVIDPGFCKQNN----------FNSRTGMESL--TVVPISKASANQRAGVITGFNPLSDFRGCAHV 246 (1320)
Q Consensus 191 -I~~VID~g~~k~~~----------yd~~~g~~~l--~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L 246 (1320)
+..||=.++|-.+- |.-..|-... ..-|...-...|=+||.=|....+ |.++.+
T Consensus 824 ~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~--G~v~il 890 (928)
T PRK08074 824 ELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDR--GTVFVL 890 (928)
T ss_pred ceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCce--EEEEEe
Confidence 47777666643211 1111111111 112445566788899998887653 555544
No 258
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.73 E-value=0.013 Score=64.30 Aligned_cols=54 Identities=26% Similarity=0.264 Sum_probs=35.6
Q ss_pred CChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecc
Q psy1907 670 PIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQP 723 (1320)
Q Consensus 670 Pi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQP 723 (1320)
|........++++.+++++++.|+.|||||...-.+-++.-..+.-.+|++|.|
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp 57 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRP 57 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 455667789999999999999999999999887665443322222347999988
No 259
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=95.60 E-value=0.016 Score=59.69 Aligned_cols=60 Identities=23% Similarity=0.325 Sum_probs=41.1
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcC
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLD 61 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~ 61 (1320)
||-+.+.+.+++...+.+|++||+||+|=-+..+-...++++..... ...++|+||||.+
T Consensus 78 Mc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~-g~~~~i~mTATPP 137 (148)
T PF07652_consen 78 MCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES-GEAKVIFMTATPP 137 (148)
T ss_dssp EEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT-TS-EEEEEESS-T
T ss_pred cccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc-cCeeEEEEeCCCC
Confidence 56677777777744499999999999996555554566777776543 4578999999984
No 260
>PRK10867 signal recognition particle protein; Provisional
Probab=95.57 E-value=0.033 Score=67.90 Aligned_cols=58 Identities=26% Similarity=0.316 Sum_probs=40.4
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHccCC-CCCcEEEEecccHHHHHHHHHHHHHHhCCC
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAGFT-KDKMKIGCTQPRRVAAMSVSARVAEEMGVK 742 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~~~-~~~~~I~~tQPRRvAA~svA~rva~e~~~~ 742 (1320)
..+++++|++||||||-+-.+.....-. +....++.+-++|.+|+.--+..++..|.+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~ 158 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVP 158 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCe
Confidence 3588999999999999876654432111 112246779999999987666777766543
No 261
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.54 E-value=0.07 Score=70.44 Aligned_cols=136 Identities=10% Similarity=0.090 Sum_probs=85.4
Q ss_pred cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecC-CCCHHHHHHHcCCCCCCC
Q psy1907 94 ADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYS-NLPTDMQTKIFLPTPPNA 172 (1320)
Q Consensus 94 ~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~-~l~~~~r~~i~~~~~~g~ 172 (1320)
.+|.+.+...+..+. . .+|++||++||.+..+.++..|... ...+ ...| +.+ +.++.+.|+.+.
T Consensus 630 ~~~~~~~~~~i~~~~-~-~~g~~LVLFtS~~~l~~v~~~l~~~---------~~~~-l~Qg~~~~---~~~l~~~F~~~~ 694 (820)
T PRK07246 630 EVYAEEIAKRLEELK-Q-LQQPILVLFNSKKHLLAVSDLLDQW---------QVSH-LAQEKNGT---AYNIKKRFDRGE 694 (820)
T ss_pred HHHHHHHHHHHHHHH-h-cCCCEEEEECcHHHHHHHHHHHhhc---------CCcE-EEeCCCcc---HHHHHHHHHcCC
Confidence 457777777776665 2 3699999999999999998888542 2223 2333 222 345677777788
Q ss_pred eEEEEeCcccccCCCCCC--ccEEEcCCCCccccccC----------CCCcccc--ceeccCHhhHHHHhhhcCCCCCCC
Q psy1907 173 RKVVLATNIAETSLTIDN--IIYVIDPGFCKQNNFNS----------RTGMESL--TVVPISKASANQRAGVITGFNPLS 238 (1320)
Q Consensus 173 ~kVlvATdIAe~gldIp~--I~~VID~g~~k~~~yd~----------~~g~~~l--~~~piSk~s~~QR~GRAGR~g~g~ 238 (1320)
..||++|+----|||+|+ ...||=.++|-.+-.|| ..|-+.. ..-|-..-.+.|=+||.=|....+
T Consensus 695 ~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~ 774 (820)
T PRK07246 695 QQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQK 774 (820)
T ss_pred CeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCc
Confidence 889999999999999973 45555456543321121 1111111 122444556788888888876543
Q ss_pred CceEEEEe
Q psy1907 239 DFRGCAHV 246 (1320)
Q Consensus 239 ~fg~~~~L 246 (1320)
|.++.+
T Consensus 775 --Gvv~il 780 (820)
T PRK07246 775 --SAVLIL 780 (820)
T ss_pred --EEEEEE
Confidence 554433
No 262
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.53 E-value=0.049 Score=58.99 Aligned_cols=93 Identities=26% Similarity=0.211 Sum_probs=51.5
Q ss_pred HHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCc
Q psy1907 676 QDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFED 755 (1320)
Q Consensus 676 ~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~ 755 (1320)
+-|-.+++...+++|+|+|||||||.+--++ .. +....+.|.+--|. |+.......+++..+.+.
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~-~~-i~~~~~~i~ied~~-------------E~~~~~~~~~~~~~~~~~ 80 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALL-AF-IPPDERIITIEDTA-------------ELQLPHPNWVRLVTRPGN 80 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHH-hh-cCCCCCEEEECCcc-------------ccCCCCCCEEEEEEecCC
Confidence 3455577889999999999999999995543 22 12223333332222 222233445665554432
Q ss_pred cCCCCccEEEEccHHHHHHHh-cCCCCCCccEEEEccc
Q psy1907 756 CTSERTIIKYMTDGTLHREFL-SEPDLASYSVMIIDEA 792 (1320)
Q Consensus 756 ~~s~~T~i~y~TdG~Llrel~-~dp~L~~ys~iIiDE~ 792 (1320)
.. ....+|-.-+++..+ .+ .+.||++|+
T Consensus 81 ~~----~~~~~~~~~~l~~~lR~~-----pd~i~igEi 109 (186)
T cd01130 81 VE----GSGEVTMADLLRSALRMR-----PDRIIVGEV 109 (186)
T ss_pred CC----CCCccCHHHHHHHHhccC-----CCEEEEEcc
Confidence 21 011233444554433 34 478999998
No 263
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=95.53 E-value=0.047 Score=72.64 Aligned_cols=54 Identities=19% Similarity=0.283 Sum_probs=37.0
Q ss_pred HHHHHHHHhCCEEEEEcCCCCchhc--HHHHHHHHccCCCCCcEEEEecccHHHHHHHHH
Q psy1907 676 QDLIDAVRDHQVLIIEGETGSGKTT--QIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSA 733 (1320)
Q Consensus 676 ~~il~~i~~~~v~ii~geTGsGKTT--qvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~ 733 (1320)
+.|.+++.++..++|.++||+|||- .+|-..+-. .+++|+++-|-+.-+..+..
T Consensus 255 ~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~----~~~~vvi~t~t~~Lq~Ql~~ 310 (850)
T TIGR01407 255 ELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI----TEKPVVISTNTKVLQSQLLE 310 (850)
T ss_pred HHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc----CCCeEEEEeCcHHHHHHHHH
Confidence 4677788889999999999999993 456433211 23467777777665555543
No 264
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.48 E-value=0.038 Score=72.19 Aligned_cols=90 Identities=19% Similarity=0.225 Sum_probs=54.1
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecC
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFE 754 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe 754 (1320)
++.+-..+..+++++|+|.+|+||||.+-..+.- +...|.+|.++-|--.||..+. +..|..
T Consensus 358 ~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~--~~~~g~~V~~~ApTg~Aa~~L~----~~~g~~------------ 419 (744)
T TIGR02768 358 YEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREA--WEAAGYRVIGAALSGKAAEGLQ----AESGIE------------ 419 (744)
T ss_pred HHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHH--HHhCCCeEEEEeCcHHHHHHHH----hccCCc------------
Confidence 4444444455789999999999999998765421 1122446888888777764443 322221
Q ss_pred ccCCCCccEEEEccHHH-HHHHhcCCCCCCccEEEEccc
Q psy1907 755 DCTSERTIIKYMTDGTL-HREFLSEPDLASYSVMIIDEA 792 (1320)
Q Consensus 755 ~~~s~~T~i~y~TdG~L-lrel~~dp~L~~ys~iIiDE~ 792 (1320)
. .|-.-+ ++.-...+.+..+++|||||+
T Consensus 420 a----------~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 420 S----------RTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred e----------eeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 0 111112 222122345789999999999
No 265
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=95.47 E-value=0.038 Score=71.41 Aligned_cols=122 Identities=17% Similarity=0.113 Sum_probs=67.7
Q ss_pred cCCChhhHH---HHHHHHHh------CCEEEEEcCCCCchhcHHHHH---HHHccCCCCCcEEEEecccHHHHHHHHHHH
Q psy1907 668 SLPIYPFKQ---DLIDAVRD------HQVLIIEGETGSGKTTQIPQY---LHEAGFTKDKMKIGCTQPRRVAAMSVSARV 735 (1320)
Q Consensus 668 ~LPi~~~~~---~il~~i~~------~~v~ii~geTGsGKTTqvPq~---l~e~~~~~~~~~I~~tQPRRvAA~svA~rv 735 (1320)
..|.|.+.. ++++.+.+ .+--+|..+||||||--+-.+ |+.. ....+|++.-||+--.-......
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~---~~~~~vl~lvdR~~L~~Q~~~~f 313 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL---LKNPKVFFVVDRRELDYQLMKEF 313 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh---cCCCeEEEEECcHHHHHHHHHHH
Confidence 345555433 34455544 357889999999999554333 3321 12347999999987777766655
Q ss_pred HHHhCCCCCCeeeEEee-c-CccCCCCccEEEEccHHHHHHHhcC--C-CCCC-ccEEEEccccc
Q psy1907 736 AEEMGVKLGCEVGYAIR-F-EDCTSERTIIKYMTDGTLHREFLSE--P-DLAS-YSVMIIDEAHP 794 (1320)
Q Consensus 736 a~e~~~~lG~~VGY~ir-f-e~~~s~~T~i~y~TdG~Llrel~~d--p-~L~~-ys~iIiDE~HE 794 (1320)
..-..... ..++ ++. + ....+.+..|+++|-..|.+.+... + .... -.+||+||||.
T Consensus 314 ~~~~~~~~-~~~~-s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHr 376 (667)
T TIGR00348 314 QSLQKDCA-ERIE-SIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHR 376 (667)
T ss_pred HhhCCCCC-cccC-CHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcc
Confidence 44221100 0011 000 0 0012234679999999987654321 1 1111 23899999993
No 266
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.45 E-value=0.027 Score=69.02 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=25.0
Q ss_pred HHHHHHHhCCE---EEEEcCCCCchhcHHHHHHHH
Q psy1907 677 DLIDAVRDHQV---LIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 677 ~il~~i~~~~v---~ii~geTGsGKTTqvPq~l~e 708 (1320)
.|..+++++++ ++++||.|+||||..=.+.-.
T Consensus 29 ~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 29 ALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 46677777765 699999999999988666543
No 267
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.45 E-value=0.03 Score=65.79 Aligned_cols=33 Identities=39% Similarity=0.646 Sum_probs=27.1
Q ss_pred hHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 674 FKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 674 ~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
..+-|..+++.+..++|+|+|||||||.+=..+
T Consensus 137 ~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~ 169 (319)
T PRK13894 137 QREAIIAAVRAHRNILVIGGTGSGKTTLVNAII 169 (319)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHH
Confidence 345566688999999999999999999995544
No 268
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.42 E-value=0.045 Score=64.41 Aligned_cols=55 Identities=27% Similarity=0.350 Sum_probs=38.3
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcE--EEEecccHHHHHHHHHHHHHHhC
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMK--IGCTQPRRVAAMSVSARVAEEMG 740 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~--I~~tQPRRvAA~svA~rva~e~~ 740 (1320)
..+++.|+|++||||||-+-....... ..+++ ++.+-+.|.+|+.-....+..+|
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~--~~g~~V~Li~~D~~r~~a~eql~~~a~~~~ 169 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK--AQGKKVLLAAGDTFRAAAIEQLQVWGERVG 169 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCeEEEEecCccchhhHHHHHHHHHHcC
Confidence 467999999999999999876643321 22333 34466788888776666677665
No 269
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=95.41 E-value=0.033 Score=72.15 Aligned_cols=131 Identities=24% Similarity=0.269 Sum_probs=87.5
Q ss_pred HHhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHH--HHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCC
Q psy1907 664 ETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQI--PQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGV 741 (1320)
Q Consensus 664 ~~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqv--Pq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~ 741 (1320)
..++.|-+.++--+|+-++.=|+--|....||+|||.-. |-|+.. ..+. .+.+.-|-+.-|...|+-+.. +..
T Consensus 73 a~~R~lg~~~~dvQlig~l~L~~G~Iaem~TGeGKTLva~lpa~l~a--L~G~--~V~IvTpn~yLA~rd~e~~~~-l~~ 147 (830)
T PRK12904 73 ASKRVLGMRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNA--LTGK--GVHVVTVNDYLAKRDAEWMGP-LYE 147 (830)
T ss_pred HHHHHhCCCCCccHHHhhHHhcCCchhhhhcCCCcHHHHHHHHHHHH--HcCC--CEEEEecCHHHHHHHHHHHHH-HHh
Confidence 346678888888999999988888999999999999764 555432 2222 255666777655554443332 245
Q ss_pred CCCCeeeEEeecCccC----CCCccEEEEccHHHHHHHhcCC--------CCCCccEEEEcccccceEEEcC
Q psy1907 742 KLGCEVGYAIRFEDCT----SERTIIKYMTDGTLHREFLSEP--------DLASYSVMIIDEAHPKVYVIDP 801 (1320)
Q Consensus 742 ~lG~~VGY~irfe~~~----s~~T~i~y~TdG~Llrel~~dp--------~L~~ys~iIiDE~HER~~ViD~ 801 (1320)
.+|-.||.-+...+.. .-...|+|.|.|=|---++.|. .+..+...|||||. ...||-
T Consensus 148 ~LGlsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaD--siLIDe 217 (830)
T PRK12904 148 FLGLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVD--SILIDE 217 (830)
T ss_pred hcCCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechh--hheecc
Confidence 6788888766532211 1136799999998822222333 36789999999996 345553
No 270
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.39 E-value=0.037 Score=68.18 Aligned_cols=60 Identities=22% Similarity=0.240 Sum_probs=43.1
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcE--EEEecccHHHHHHHHHHHHHHhCCC
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMK--IGCTQPRRVAAMSVSARVAEEMGVK 742 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~--I~~tQPRRvAA~svA~rva~e~~~~ 742 (1320)
....|+.++|+||+||||-+-.+....-...++.+ ++.+-+-|++|..--...++.+|..
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 35689999999999999999876543211222223 4556788999988888888888753
No 271
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.22 E-value=0.037 Score=69.34 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=23.9
Q ss_pred HHHHHHHHhCCE---EEEEcCCCCchhcHHHHHH
Q psy1907 676 QDLIDAVRDHQV---LIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 676 ~~il~~i~~~~v---~ii~geTGsGKTTqvPq~l 706 (1320)
..|..+++.+++ ++++|+.|+||||..=.+.
T Consensus 26 ~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 26 NSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 356777777654 8899999999998875554
No 272
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.19 E-value=0.042 Score=65.91 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=38.1
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSV 731 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~sv 731 (1320)
.+...+.|.|+-|+|||+.+-.+.... ...+..+++|-|..+||..+
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~--~~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYL--RSRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHh--ccccceEEEecchHHHHHhc
Confidence 677889999999999999987766443 22455799999999999876
No 273
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.17 E-value=0.043 Score=70.05 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=24.2
Q ss_pred HHHHHHHHhC---CEEEEEcCCCCchhcHHHHHHHH
Q psy1907 676 QDLIDAVRDH---QVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 676 ~~il~~i~~~---~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
+.|..++.++ +.++++|+.|+||||..=.|.-+
T Consensus 26 ~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKa 61 (830)
T PRK07003 26 RALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKA 61 (830)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3555666664 47799999999999987655443
No 274
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.17 E-value=0.052 Score=65.90 Aligned_cols=61 Identities=25% Similarity=0.294 Sum_probs=44.9
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHHHHccCC--CCCcEEEEecccHHHHHHHHHHHHHHhCCC
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYLHEAGFT--KDKMKIGCTQPRRVAAMSVSARVAEEMGVK 742 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~--~~~~~I~~tQPRRvAA~svA~rva~e~~~~ 742 (1320)
+..+.++.++|+||+||||.+-.+....-.. .....++++-.-|+++..--...|+-+|.+
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp 250 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVS 250 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCc
Confidence 3578899999999999999998664432111 112236778888999998888888887755
No 275
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.16 E-value=0.05 Score=56.16 Aligned_cols=36 Identities=28% Similarity=0.260 Sum_probs=26.1
Q ss_pred EEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecc
Q psy1907 687 VLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQP 723 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQP 723 (1320)
+++|.|++||||||.+=+++..... .++.-+++..+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECC
Confidence 4789999999999999999877644 23333455544
No 276
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.14 E-value=0.16 Score=65.69 Aligned_cols=185 Identities=15% Similarity=0.122 Sum_probs=111.4
Q ss_pred CcEEEEecCcCH-HHHHhhcC---CCCEE--EeCCccccee---EEEEc----CCc-cchHHHHHHHHHHHHhhCCCCCE
Q psy1907 51 LKLLISSATLDA-QKFSEFFD---DAPVF--RIPGRRFPVD---IYYTK----APE-ADYIDACVVSILQIHATQPLGDI 116 (1320)
Q Consensus 51 ~qlIl~SATl~~-~~f~~~f~---~~~vi--~i~g~~~pV~---~~y~~----~~~-~~~l~~~i~~v~~i~~~~~~g~i 116 (1320)
..+|++|||+.+ ..|..+.+ ..... .....+++.. ..+.. .+. ..+.......+..+.... +|++
T Consensus 404 ~~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 482 (654)
T COG1199 404 ASVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKAS-PGGV 482 (654)
T ss_pred CcEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhhc-CCCE
Confidence 459999999944 44555442 11111 2222222211 12211 112 256777777777776665 5799
Q ss_pred EEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCc--cEE
Q psy1907 117 LVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNI--IYV 194 (1320)
Q Consensus 117 LVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I--~~V 194 (1320)
|||+|+.+..+.+.+.+.... ....+..+|.-+..+..+-|....++ -++|+|.-..-|||++|= ..|
T Consensus 483 lvlF~Sy~~l~~~~~~~~~~~--------~~~~v~~q~~~~~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~~v 552 (654)
T COG1199 483 LVLFPSYEYLKRVAERLKDER--------STLPVLTQGEDEREELLEKFKASGEG--LILVGGGSFWEGVDFPGDALRLV 552 (654)
T ss_pred EEEeccHHHHHHHHHHHhhcC--------ccceeeecCCCcHHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCeeEE
Confidence 999999999999999887531 11345567776666544444444333 899999999999999864 555
Q ss_pred EcCCCCcccc----------ccCCCCc--cccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecC
Q psy1907 195 IDPGFCKQNN----------FNSRTGM--ESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLG 248 (1320)
Q Consensus 195 ID~g~~k~~~----------yd~~~g~--~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~ 248 (1320)
|=.|+|-... |.-+.|. ......|...-...|=+||+=|.... +|.++.+-.
T Consensus 553 vI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D--~G~ivllD~ 616 (654)
T COG1199 553 VIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDD--RGVIVLLDK 616 (654)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCC--ceEEEEecc
Confidence 5556544321 2222221 12245566677788999999886554 366665543
No 277
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.14 E-value=0.064 Score=62.92 Aligned_cols=29 Identities=41% Similarity=0.545 Sum_probs=23.7
Q ss_pred HHHHHHhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 678 LIDAVRDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 678 il~~i~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
|--+++.+..++|+|+|||||||.+-..+
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~ 165 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLV 165 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHH
Confidence 33467788999999999999999995443
No 278
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.11 E-value=0.039 Score=71.05 Aligned_cols=61 Identities=23% Similarity=0.247 Sum_probs=43.2
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEE--EEecccHHHHHHHHHHHHHHhCCCC
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKI--GCTQPRRVAAMSVSARVAEEMGVKL 743 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I--~~tQPRRvAA~svA~rva~e~~~~l 743 (1320)
..+.|+.++|+||+||||-+-......-...++++| +.+-+-|++|+.--+..++.+|.++
T Consensus 183 ~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv 245 (767)
T PRK14723 183 AQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV 245 (767)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc
Confidence 346799999999999999997765432112222344 3356789999888888888887643
No 279
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.08 E-value=0.041 Score=58.62 Aligned_cols=52 Identities=25% Similarity=0.290 Sum_probs=33.5
Q ss_pred EEEEEcCCCCchhcHHHHHHHHccCCCCCcEE--EEecccHHHHHHHHHHHHHHhC
Q psy1907 687 VLIIEGETGSGKTTQIPQYLHEAGFTKDKMKI--GCTQPRRVAAMSVSARVAEEMG 740 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I--~~tQPRRvAA~svA~rva~e~~ 740 (1320)
+++++|++||||||..-.+.....- .+.++ +.+-++|..+...-.+.++++|
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~--~g~~v~~i~~D~~~~~~~~~l~~~~~~~~ 55 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK--KGKKVLLVAADTYRPAAIEQLRVLGEQVG 55 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCcEEEEEcCCCChHHHHHHHHhcccCC
Confidence 6899999999999997665543221 12234 4467888877655444454443
No 280
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.03 E-value=0.032 Score=66.89 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=24.2
Q ss_pred HHHHHHHHhCC---EEEEEcCCCCchhcHHHHHHHH
Q psy1907 676 QDLIDAVRDHQ---VLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 676 ~~il~~i~~~~---v~ii~geTGsGKTTqvPq~l~e 708 (1320)
+.|..++..++ .++++||+|+||||.+=.+..+
T Consensus 26 ~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 26 TAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred HHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 34566666654 5799999999999987665543
No 281
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.97 E-value=0.04 Score=68.21 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=23.8
Q ss_pred HHHHHHHHhCCE---EEEEcCCCCchhcHHHHHHH
Q psy1907 676 QDLIDAVRDHQV---LIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 676 ~~il~~i~~~~v---~ii~geTGsGKTTqvPq~l~ 707 (1320)
..|..++.++++ +++.||+|+||||..=.+..
T Consensus 24 ~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 24 KLIINALKKNSISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345566776654 79999999999998765543
No 282
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.97 E-value=0.06 Score=65.85 Aligned_cols=58 Identities=28% Similarity=0.295 Sum_probs=40.2
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCC
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVK 742 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~ 742 (1320)
..+++++|+|||||||-+-.+.....-.+....++.+-+.|.+|...-+..|+..|.+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCc
Confidence 4689999999999999987664322111112245667888999888777788777654
No 283
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.96 E-value=0.042 Score=61.24 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=20.6
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
..++.++|.|++|||||+.+=.+..+
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999988655443
No 284
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.96 E-value=0.055 Score=59.97 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=13.8
Q ss_pred CEEEEEcCCCCchhcHH
Q psy1907 686 QVLIIEGETGSGKTTQI 702 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqv 702 (1320)
.-+|+.||+|+||||..
T Consensus 51 ~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp -EEEEESSTTSSHHHHH
T ss_pred ceEEEECCCccchhHHH
Confidence 35899999999999643
No 285
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.94 E-value=0.038 Score=67.09 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCE---EEEEcCCCCchhcHHHHH
Q psy1907 676 QDLIDAVRDHQV---LIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 676 ~~il~~i~~~~v---~ii~geTGsGKTTqvPq~ 705 (1320)
..|..+++++++ +++.||+|+||||..=-+
T Consensus 26 ~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 26 RTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred HHHHHHHHhCCcceeEEEECCCCCCHHHHHHHH
Confidence 456677777644 889999999999876433
No 286
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.93 E-value=0.047 Score=58.35 Aligned_cols=87 Identities=25% Similarity=0.274 Sum_probs=44.2
Q ss_pred EEEEcCCCCchhcHHHHHHHHc---cCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecC-ccC------
Q psy1907 688 LIIEGETGSGKTTQIPQYLHEA---GFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFE-DCT------ 757 (1320)
Q Consensus 688 ~ii~geTGsGKTTqvPq~l~e~---~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe-~~~------ 757 (1320)
++|+|++|+||||.+=.++-.. |+.-.| .+|++-| .-|..+||.+..= +..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~G---f~t~evr----------------~~g~r~GF~iv~l~~g~~~~la~ 62 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPVGG---FYTEEVR----------------ENGRRIGFDIVDLNSGEEAILAR 62 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGEEE---EEEEEEE----------------TTSSEEEEEEEET-TS-EEEEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCccce---EEeeccc----------------CCCceEEEEEEECcCCCcccccc
Confidence 6899999999999997766443 332222 3454432 3477889887633 110
Q ss_pred -CCCccEEEEccHHHHHHHhc--CCCC----CCccEEEEcccc
Q psy1907 758 -SERTIIKYMTDGTLHREFLS--EPDL----ASYSVMIIDEAH 793 (1320)
Q Consensus 758 -s~~T~i~y~TdG~Llrel~~--dp~L----~~ys~iIiDE~H 793 (1320)
+..........++.+..+.. -|.| .+.++|||||+=
T Consensus 63 ~~~~~~~~vgky~v~~e~fe~~~~~~L~~~~~~~~liviDEIG 105 (168)
T PF03266_consen 63 VDFRSGPRVGKYFVDLESFEEIGLPALRNALSSSDLIVIDEIG 105 (168)
T ss_dssp TTSS-SCECTTCEE-HHHHHCCCCCCCHHHHHCCHEEEE---S
T ss_pred ccccccccCCCEEEcHHHHHHHHHHHHHhhcCCCCEEEEeccc
Confidence 11112222233334444322 2333 366899999983
No 287
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=94.90 E-value=0.055 Score=70.21 Aligned_cols=121 Identities=23% Similarity=0.273 Sum_probs=80.8
Q ss_pred HhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHH--HHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhC--
Q psy1907 665 TKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQI--PQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMG-- 740 (1320)
Q Consensus 665 ~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqv--Pq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~-- 740 (1320)
.|+.|-..++--+|+-++.=|+--|....||.|||.-. |-|+ ....+.+ +.|.-|-+- +|.|.|+.|+
T Consensus 75 a~R~lgm~~ydVQliGgl~L~~G~IaEm~TGEGKTL~a~lp~~l--~al~g~~--VhIvT~ndy----LA~RD~e~m~~l 146 (908)
T PRK13107 75 SKRVFEMRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYL--NALTGKG--VHVITVNDY----LARRDAENNRPL 146 (908)
T ss_pred HHHHhCCCcCchHHhcchHhcCCccccccCCCCchHHHHHHHHH--HHhcCCC--EEEEeCCHH----HHHHHHHHHHHH
Confidence 35677788888899999999999999999999999875 5544 3344444 444445444 4455555553
Q ss_pred -CCCCCeeeEEeecCccC----CCCccEEEEccHHHHHHHhcCC--------CCCCccEEEEcccc
Q psy1907 741 -VKLGCEVGYAIRFEDCT----SERTIIKYMTDGTLHREFLSEP--------DLASYSVMIIDEAH 793 (1320)
Q Consensus 741 -~~lG~~VGY~irfe~~~----s~~T~i~y~TdG~Llrel~~dp--------~L~~ys~iIiDE~H 793 (1320)
.-+|-+||.-+..-+.. .-...|+|.|.|=|---++.|. -...+.++|||||.
T Consensus 147 ~~~lGlsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvD 212 (908)
T PRK13107 147 FEFLGLTVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVD 212 (908)
T ss_pred HHhcCCeEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchh
Confidence 34677888654432211 1146899999998722333333 23778899999996
No 288
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=94.86 E-value=0.061 Score=56.87 Aligned_cols=69 Identities=26% Similarity=0.312 Sum_probs=44.9
Q ss_pred CCHHHHHHHHcCCC-CCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCc--CHHHHHh-hcC
Q psy1907 1 MTDGTLHREFLSEP-DLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL--DAQKFSE-FFD 70 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~-~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl--~~~~f~~-~f~ 70 (1320)
+|++.+.+.+.... ...+++++||||+|..... .....+...+....+..+++++|||+ +...+.. ++.
T Consensus 111 ~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~ 183 (201)
T smart00487 111 TTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLN 183 (201)
T ss_pred eChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC-CcHHHHHHHHHhCCccceEEEEecCCchhHHHHHHHhcC
Confidence 47888888887765 4788999999999964421 22222222222235678899999999 3444444 443
No 289
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.84 E-value=0.058 Score=63.78 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=16.2
Q ss_pred CEEEEEcCCCCchhcHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~ 705 (1320)
+.++|.|++|+||||.+=.+
T Consensus 52 ~~~ll~GppG~GKT~la~~i 71 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANII 71 (328)
T ss_pred CcEEEECCCCccHHHHHHHH
Confidence 57899999999999766433
No 290
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.82 E-value=0.05 Score=63.48 Aligned_cols=48 Identities=27% Similarity=0.324 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEec
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQ 722 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQ 722 (1320)
.+-|..+++.+..++|+|+|||||||.+-..+-.........+|++.+
T Consensus 122 ~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiE 169 (299)
T TIGR02782 122 RDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIE 169 (299)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEEC
Confidence 355667888899999999999999999966553322111234566655
No 291
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.81 E-value=0.038 Score=70.37 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCE---EEEEcCCCCchhcHHHHHH
Q psy1907 676 QDLIDAVRDHQV---LIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 676 ~~il~~i~~~~v---~ii~geTGsGKTTqvPq~l 706 (1320)
..|..++.++++ .+++|+.|+||||..=-|.
T Consensus 26 ~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lA 59 (647)
T PRK07994 26 TALANALDLGRLHHAYLFSGTRGVGKTTIARLLA 59 (647)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 466778888776 8999999999999875543
No 292
>KOG0350|consensus
Probab=94.74 E-value=0.093 Score=63.05 Aligned_cols=104 Identities=27% Similarity=0.298 Sum_probs=68.0
Q ss_pred EEEEEcCCCCchhcH--HH--HHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEee-----cCcc-
Q psy1907 687 VLIIEGETGSGKTTQ--IP--QYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIR-----FEDC- 756 (1320)
Q Consensus 687 v~ii~geTGsGKTTq--vP--q~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~ir-----fe~~- 756 (1320)
=+.|.++||||||-- || |.|..--. +.-+-++.-|-|--|..|+.-+.. .....|-.|+--.. .|..
T Consensus 185 DIcV~ApTGSGKTLaY~iPIVQ~L~~R~v--~~LRavVivPtr~L~~QV~~~f~~-~~~~tgL~V~~~sgq~sl~~E~~q 261 (620)
T KOG0350|consen 185 DICVNAPTGSGKTLAYVIPIVQLLSSRPV--KRLRAVVIVPTRELALQVYDTFKR-LNSGTGLAVCSLSGQNSLEDEARQ 261 (620)
T ss_pred ceEEecCCCCCceeeehhHHHHHHccCCc--cceEEEEEeeHHHHHHHHHHHHHH-hccCCceEEEecccccchHHHHHH
Confidence 467899999999964 45 33322111 112456677888877777765543 33344555553322 2211
Q ss_pred ---CC--CCccEEEEccHHHHHHHhcCC--CCCCccEEEEcccc
Q psy1907 757 ---TS--ERTIIKYMTDGTLHREFLSEP--DLASYSVMIIDEAH 793 (1320)
Q Consensus 757 ---~s--~~T~i~y~TdG~Llrel~~dp--~L~~ys~iIiDE~H 793 (1320)
.. .+-.|+..|.|-|...|-+++ .|.+--.+|||||.
T Consensus 262 L~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD 305 (620)
T KOG0350|consen 262 LASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD 305 (620)
T ss_pred HhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH
Confidence 11 134799999999999998876 78999999999995
No 293
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.69 E-value=0.1 Score=67.59 Aligned_cols=104 Identities=18% Similarity=0.206 Sum_probs=74.0
Q ss_pred HHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeec------C
Q psy1907 681 AVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRF------E 754 (1320)
Q Consensus 681 ~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irf------e 754 (1320)
-+-.++-.-|++|||.||||..--+=+- +...|++.++.-|-+.-+..+++|+.. +++..| |+.++. -
T Consensus 93 R~~rg~SFaiiAPTGvGKTTfg~~~sl~--~a~kgkr~yii~PT~~Lv~Q~~~kl~~-~~e~~~---~~~~~~~yh~~l~ 166 (1187)
T COG1110 93 RLVRGKSFAIIAPTGVGKTTFGLLMSLY--LAKKGKRVYIIVPTTTLVRQVYERLKK-FAEDAG---SLDVLVVYHSALP 166 (1187)
T ss_pred HHHcCCceEEEcCCCCchhHHHHHHHHH--HHhcCCeEEEEecCHHHHHHHHHHHHH-HHhhcC---Ccceeeeeccccc
Confidence 3567888889999999999986544221 122456899999999999999999865 444444 344444 1
Q ss_pred c---------cCCCCccEEEEccHHHHHHHhcCCCCC--CccEEEEcccc
Q psy1907 755 D---------CTSERTIIKYMTDGTLHREFLSEPDLA--SYSVMIIDEAH 793 (1320)
Q Consensus 755 ~---------~~s~~T~i~y~TdG~Llrel~~dp~L~--~ys~iIiDE~H 793 (1320)
. -.+.+-.|...|.+.|-+.+ ..|+ +++.|++|.|.
T Consensus 167 ~~ekee~le~i~~gdfdIlitTs~FL~k~~---e~L~~~kFdfifVDDVD 213 (1187)
T COG1110 167 TKEKEEALERIESGDFDILITTSQFLSKRF---EELSKLKFDFIFVDDVD 213 (1187)
T ss_pred hHHHHHHHHHHhcCCccEEEEeHHHHHhhH---HHhcccCCCEEEEccHH
Confidence 1 12446789999998888776 3344 69999999997
No 294
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=94.66 E-value=0.069 Score=69.07 Aligned_cols=126 Identities=29% Similarity=0.382 Sum_probs=90.4
Q ss_pred HHhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHH--HHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhC-
Q psy1907 664 ETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQI--PQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMG- 740 (1320)
Q Consensus 664 ~~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqv--Pq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~- 740 (1320)
..|+.|-..++--+|+-++.=|+--|..-.||-|||.-. |-|| .++.+.|..|+-+-+ -+|+|=|++||
T Consensus 77 a~~R~lG~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpayl--nAL~GkgVhVVTvNd------YLA~RDae~m~~ 148 (939)
T PRK12902 77 ASKRVLGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYL--NALTGKGVHVVTVND------YLARRDAEWMGQ 148 (939)
T ss_pred HHHHHhCCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHH--HhhcCCCeEEEeCCH------HHHHhHHHHHHH
Confidence 346788889999999999999999999999999999875 5555 455555543333332 57889999987
Q ss_pred --CCCCCeeeEEeecCccCC------CCccEEEEccHHH----HH-HHhcCC---CCCCccEEEEcccccceEEEcC
Q psy1907 741 --VKLGCEVGYAIRFEDCTS------ERTIIKYMTDGTL----HR-EFLSEP---DLASYSVMIIDEAHPKVYVIDP 801 (1320)
Q Consensus 741 --~~lG~~VGY~irfe~~~s------~~T~i~y~TdG~L----lr-el~~dp---~L~~ys~iIiDE~HER~~ViD~ 801 (1320)
.-+|-+||.-.. +..+ -...|+|+|++=| || .|..++ ....+...|||||. .+.||-
T Consensus 149 vy~~LGLtvg~i~~--~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvD--SILIDE 221 (939)
T PRK12902 149 VHRFLGLSVGLIQQ--DMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVD--SILIDE 221 (939)
T ss_pred HHHHhCCeEEEECC--CCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccc--ceeecc
Confidence 357899997543 2222 2467999999976 33 333333 56788999999996 455663
No 295
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.64 E-value=0.056 Score=63.58 Aligned_cols=48 Identities=23% Similarity=0.259 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEec
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQ 722 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQ 722 (1320)
.+-|..+++....++|+|+|||||||.+=..+..-.....+.+|++.+
T Consensus 134 ~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiE 181 (323)
T PRK13833 134 ASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILE 181 (323)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEec
Confidence 455677888889999999999999999955443322112234666655
No 296
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.61 E-value=0.08 Score=65.95 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=22.2
Q ss_pred HHHHHHHhCC---EEEEEcCCCCchhcHHHHHH
Q psy1907 677 DLIDAVRDHQ---VLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 677 ~il~~i~~~~---v~ii~geTGsGKTTqvPq~l 706 (1320)
.|..++.+++ ..+++|++|+||||..=.+.
T Consensus 32 ~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 32 VLSYTILNDRLAGGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 4445566654 68999999999998775543
No 297
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=94.60 E-value=0.0095 Score=58.17 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=32.2
Q ss_pred hhccccccccccccccccCchhhhhhc-ccccchhHHHHHhhccccccccceeeeccCCCCCCc
Q psy1907 322 KRKSSEYKVGNGEDSFCVSPLYNLTIQ-SSSFQSITIQCFASLQLHHPVIQLFTILPSSSTSSR 384 (1320)
Q Consensus 322 ~~~~~L~~lG~~~~~~~v~p~~~~~l~-~~~~~~l~~~~~~~~~~~~p~~~~~~i~~~~~~~~~ 384 (1320)
+..+.||.+|+.++.+|++|.+|++|+ +..++|+..+ +.|+++|++.++
T Consensus 13 d~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~--------------~~iaa~ls~~~~ 62 (102)
T PF04408_consen 13 DENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEA--------------LIIAAILSVRSP 62 (102)
T ss_dssp -TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHH--------------HHHHHHHTSS--
T ss_pred CCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHH--------------HHHHHHHcCCCc
Confidence 556789999999999999999999976 6667774333 356667666333
No 298
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.60 E-value=0.033 Score=60.03 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=16.6
Q ss_pred HHHHhCCEEEEEcCCCCchhcHHH
Q psy1907 680 DAVRDHQVLIIEGETGSGKTTQIP 703 (1320)
Q Consensus 680 ~~i~~~~v~ii~geTGsGKTTqvP 703 (1320)
+.+++++.+++.|+||+|||...-
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa~ 65 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLAV 65 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHHH
T ss_pred CCcccCeEEEEEhhHhHHHHHHHH
Confidence 345678899999999999995543
No 299
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.57 E-value=0.091 Score=64.15 Aligned_cols=94 Identities=26% Similarity=0.371 Sum_probs=55.3
Q ss_pred CCChhhH-HHHHHHHH-hCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCe
Q psy1907 669 LPIYPFK-QDLIDAVR-DHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCE 746 (1320)
Q Consensus 669 LPi~~~~-~~il~~i~-~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~ 746 (1320)
|..++.. ..+..++. .+-.++|+|||||||||-+=.+|-+..-.. .+| || +-+-
T Consensus 240 Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~--~nI-~T---------------------iEDP 295 (500)
T COG2804 240 LGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNTPE--RNI-IT---------------------IEDP 295 (500)
T ss_pred hCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcCCC--ceE-EE---------------------eeCC
Confidence 3434333 44555554 456889999999999999988887654332 233 22 1123
Q ss_pred eeEEeecCccCCCCccEEEEccHHHHHHH-hcCCCCCCccEEEEccc
Q psy1907 747 VGYAIRFEDCTSERTIIKYMTDGTLHREF-LSEPDLASYSVMIIDEA 792 (1320)
Q Consensus 747 VGY~irfe~~~s~~T~i~y~TdG~Llrel-~~dp~L~~ys~iIiDE~ 792 (1320)
|=|.+..=..+.=+.+|- +|---.||-+ ..|| ++|||.|+
T Consensus 296 VE~~~~gI~Q~qVN~k~g-ltfa~~LRa~LRqDP-----DvImVGEI 336 (500)
T COG2804 296 VEYQLPGINQVQVNPKIG-LTFARALRAILRQDP-----DVIMVGEI 336 (500)
T ss_pred eeeecCCcceeecccccC-CCHHHHHHHHhccCC-----CeEEEecc
Confidence 555555544433232222 3444556655 4677 57999998
No 300
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.56 E-value=0.043 Score=58.84 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.5
Q ss_pred EEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 687 VLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
+++|.|+|||||||..=||+++..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~ 24 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL 24 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998754
No 301
>PRK08181 transposase; Validated
Probab=94.56 E-value=0.054 Score=62.17 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=20.3
Q ss_pred HHHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 681 AVRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 681 ~i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
.+.+++.++|.|++|+|||...--+
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Ai 126 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAI 126 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHH
Confidence 4567889999999999999765544
No 302
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.52 E-value=0.066 Score=61.65 Aligned_cols=55 Identities=25% Similarity=0.376 Sum_probs=37.8
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcE--EEEecccHHHHHHHHHHHHHHhC
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMK--IGCTQPRRVAAMSVSARVAEEMG 740 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~--I~~tQPRRvAA~svA~rva~e~~ 740 (1320)
...+++++|+|||||||-+-.+-... ...|.+ ++.+-+-|.+|..-.+..++.+|
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~ 127 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGDTFRAAAIEQLEEWAKRLG 127 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCCCCCHHHHHHHHHHHHhCC
Confidence 35689999999999999876654322 122333 45566788888776666777666
No 303
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=94.51 E-value=0.04 Score=62.94 Aligned_cols=122 Identities=22% Similarity=0.277 Sum_probs=81.4
Q ss_pred hccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhC---CC
Q psy1907 666 KKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMG---VK 742 (1320)
Q Consensus 666 r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~---~~ 742 (1320)
++.+-..++--+|+.++.=++--|..=.||=|||.-+.-..+-..+.+.+..|+++-+ .+|+|=+++|+ ..
T Consensus 71 ~r~~g~~p~~vQll~~l~L~~G~laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~Nd------yLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 71 RRTLGLRPYDVQLLGALALHKGRLAEMKTGEGKTLIAALPAALNALQGKGVHVVTSND------YLAKRDAEEMRPFYEF 144 (266)
T ss_dssp HHHTS----HHHHHHHHHHHTTSEEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSH------HHHHHHHHHHHHHHHH
T ss_pred HHHcCCcccHHHHhhhhhcccceeEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccH------HHhhccHHHHHHHHHH
Confidence 4577788888899998876666689999999999887544443445555555666655 78889888885 46
Q ss_pred CCCeeeEEeecCccC----CCCccEEEEccHHHHHHHhcCC--------CCCCccEEEEcccc
Q psy1907 743 LGCEVGYAIRFEDCT----SERTIIKYMTDGTLHREFLSEP--------DLASYSVMIIDEAH 793 (1320)
Q Consensus 743 lG~~VGY~irfe~~~----s~~T~i~y~TdG~Llrel~~dp--------~L~~ys~iIiDE~H 793 (1320)
+|-+||+...-.+.. .-...|+|+|.+-|-.-.+.|. ...++.++|||||.
T Consensus 145 LGlsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvD 207 (266)
T PF07517_consen 145 LGLSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVD 207 (266)
T ss_dssp TT--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHH
T ss_pred hhhccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccc
Confidence 799999876644321 1124599999998765443332 35789999999997
No 304
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.49 E-value=0.094 Score=62.31 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=30.8
Q ss_pred HHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecc
Q psy1907 677 DLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQP 723 (1320)
Q Consensus 677 ~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQP 723 (1320)
-+-.+++.+..++|+|+|||||||.+--++..- . ...+|+..+.
T Consensus 154 ~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i--~-~~~rivtiEd 197 (344)
T PRK13851 154 FLHACVVGRLTMLLCGPTGSGKTTMSKTLISAI--P-PQERLITIED 197 (344)
T ss_pred HHHHHHHcCCeEEEECCCCccHHHHHHHHHccc--C-CCCCEEEECC
Confidence 344567889999999999999999996554322 2 2234665554
No 305
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.49 E-value=0.37 Score=62.12 Aligned_cols=204 Identities=11% Similarity=-0.015 Sum_probs=0.0
Q ss_pred CCCccEEEEeCCCccCcCcc----hHHHHHHHHhhcCCCCcEEEEecCcCHHHHHh----hcCCCCEEEeCCcccceeEE
Q psy1907 16 LASYSVMIIDEAHERTLHTD----ILFGLVKDIVRFRSDLKLLISSATLDAQKFSE----FFDDAPVFRIPGRRFPVDIY 87 (1320)
Q Consensus 16 Ls~~s~iVLDEaHeR~l~td----~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~----~f~~~~vi~i~g~~~pV~~~ 87 (1320)
++++..|||||=|+-+.-.+ +----+-.......+..+|+.|||...+.+.. ++.......-..+...-.+.
T Consensus 255 ~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~~~g~~~~~~~~~~~~~~~~P~v~ 334 (665)
T PRK14873 255 VEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALVESGWAHDLVAPRPVVRARAPRVR 334 (665)
T ss_pred cCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHhcCcceeeccccccccCCCCeEE
Q ss_pred EEcCCccch----------HHHHHHHHHHHHhhCCCCCEEEEcCCHH---------------------------------
Q psy1907 88 YTKAPEADY----------IDACVVSILQIHATQPLGDILVFLTGQE--------------------------------- 124 (1320)
Q Consensus 88 y~~~~~~~~----------l~~~i~~v~~i~~~~~~g~iLVFl~t~~--------------------------------- 124 (1320)
.......+. +...+...+.-..... .+|||+|.+-
T Consensus 335 ~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g--qvll~lnRrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~ 412 (665)
T PRK14873 335 ALGDSGLALERDPAARAARLPSLAFRAARDALEHG--PVLVQVPRRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPR 412 (665)
T ss_pred EEeCchhhhccccccccCccCHHHHHHHHHHHhcC--cEEEEecCCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeE
Q ss_pred --------------------------HHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEe
Q psy1907 125 --------------------------EIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLA 178 (1320)
Q Consensus 125 --------------------------eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvA 178 (1320)
..+.+.+.|.+.+ ++..|..+-++ .+++.|.. +..|||+
T Consensus 413 Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~F-------P~~~V~r~d~d-------~~l~~~~~-~~~IlVG 477 (665)
T PRK14873 413 CRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAF-------PGVPVVTSGGD-------QVVDTVDA-GPALVVA 477 (665)
T ss_pred CCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHC-------CCCCEEEEChH-------HHHHhhcc-CCCEEEE
Q ss_pred Cc----ccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHH
Q psy1907 179 TN----IAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 179 Td----IAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~ 250 (1320)
|. +++ ++++.|+--+. |..-+...++..--+-.-..|=+|||||...+ |..+..+..+
T Consensus 478 Tqgaepm~~-----g~~~lV~ilda------D~~L~~pDfRA~Er~~qll~qvagragr~~~~---G~V~iq~~p~ 539 (665)
T PRK14873 478 TPGAEPRVE-----GGYGAALLLDA------WALLGRQDLRAAEDTLRRWMAAAALVRPRADG---GQVVVVAESS 539 (665)
T ss_pred CCCCccccc-----CCceEEEEEcc------hhhhcCCCcChHHHHHHHHHHHHHhhcCCCCC---CEEEEEeCCC
No 306
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=94.48 E-value=0.062 Score=69.00 Aligned_cols=63 Identities=22% Similarity=0.353 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHH
Q psy1907 674 FKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEE 738 (1320)
Q Consensus 674 ~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e 738 (1320)
++..+..++....+++|.|++|+||||-+-.++...- ..|.+|+|+=|-..||-.+.+|+...
T Consensus 162 Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~--~~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 162 QKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV--KRGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred HHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 3455666666668999999999999999987776532 12347999999999999999999864
No 307
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=94.45 E-value=0.045 Score=70.70 Aligned_cols=126 Identities=27% Similarity=0.275 Sum_probs=85.5
Q ss_pred HhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHH--HHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhC--
Q psy1907 665 TKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQI--PQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMG-- 740 (1320)
Q Consensus 665 ~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqv--Pq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~-- 740 (1320)
.++.|-+.++--+|+.++.=++--|..-.||.|||.-. |-||. +..+.+. .+||-- --+|+|=|++||
T Consensus 69 ~~R~lG~r~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~--aL~G~~V-hVvT~N-----dyLA~RD~e~m~pv 140 (870)
T CHL00122 69 SFRTLGLRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLN--ALTGKGV-HIVTVN-----DYLAKRDQEWMGQI 140 (870)
T ss_pred HHHHhCCCCCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHH--HhcCCce-EEEeCC-----HHHHHHHHHHHHHH
Confidence 45677788888999999999999999999999999764 55553 3344443 344433 257788888886
Q ss_pred -CCCCCeeeEEeecCcc----CCCCccEEEEccH-----HHHHHHhcCC---CCCCccEEEEcccccceEEEc
Q psy1907 741 -VKLGCEVGYAIRFEDC----TSERTIIKYMTDG-----TLHREFLSEP---DLASYSVMIIDEAHPKVYVID 800 (1320)
Q Consensus 741 -~~lG~~VGY~irfe~~----~s~~T~i~y~TdG-----~Llrel~~dp---~L~~ys~iIiDE~HER~~ViD 800 (1320)
.-+|-+||.-+.-.+. ..-...|+|+|+. .|--.|..++ -..++...|||||. .+.||
T Consensus 141 y~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvD--SiLID 211 (870)
T CHL00122 141 YRFLGLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVD--SILID 211 (870)
T ss_pred HHHcCCceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecch--hheec
Confidence 3578899975442221 1124579999996 3333333332 45778899999995 34455
No 308
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.43 E-value=0.082 Score=64.49 Aligned_cols=57 Identities=25% Similarity=0.257 Sum_probs=40.8
Q ss_pred CEEEEEcCCCCchhcHHHHHHHHccC-CCCCcEEEEecccHHHHHHHHHHHHHHhCCC
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHEAGF-TKDKMKIGCTQPRRVAAMSVSARVAEEMGVK 742 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e~~~-~~~~~~I~~tQPRRvAA~svA~rva~e~~~~ 742 (1320)
.+++++|++||||||-+-.+...... .+....++.+-++|.+|..--++.++..|.+
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp 157 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVP 157 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCc
Confidence 58999999999999998776544211 1112346788999999887777777766643
No 309
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=94.40 E-value=0.18 Score=64.18 Aligned_cols=133 Identities=20% Similarity=0.171 Sum_probs=80.2
Q ss_pred hccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCC
Q psy1907 666 KKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGC 745 (1320)
Q Consensus 666 r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~ 745 (1320)
++.|-+.++--+++..+.-++--|....||||||.-...-++..... |..+.|.-|-|.-|...|+-+..- ...+|-
T Consensus 97 ~R~lg~~p~~VQ~~~~~~ll~G~Iae~~TGeGKTla~~lp~~~~al~--G~~v~VvTptreLA~qdae~~~~l-~~~lGl 173 (656)
T PRK12898 97 GRVLGQRHFDVQLMGGLALLSGRLAEMQTGEGKTLTATLPAGTAALA--GLPVHVITVNDYLAERDAELMRPL-YEALGL 173 (656)
T ss_pred HHHhCCCCChHHHHHHHHHhCCCeeeeeCCCCcHHHHHHHHHHHhhc--CCeEEEEcCcHHHHHHHHHHHHHH-HhhcCC
Confidence 44455555555555554333333999999999998754333333332 345778888887766666554332 345788
Q ss_pred eeeEEeecCcc----CCCCccEEEEccHHHHHHHhc---------------------------CCCCCCccEEEEccccc
Q psy1907 746 EVGYAIRFEDC----TSERTIIKYMTDGTLHREFLS---------------------------EPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 746 ~VGY~irfe~~----~s~~T~i~y~TdG~Llrel~~---------------------------dp~L~~ys~iIiDE~HE 794 (1320)
+||.-+...+. ......|+|.|++=|---.+. ++.+.++.+.|||||.
T Consensus 174 sv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvD- 252 (656)
T PRK12898 174 TVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEAD- 252 (656)
T ss_pred EEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeeccc-
Confidence 88876654321 112467999999854221111 2345678899999996
Q ss_pred ceEEEcCCc
Q psy1907 795 KVYVIDPGF 803 (1320)
Q Consensus 795 R~~ViD~G~ 803 (1320)
.+.||-+.
T Consensus 253 -SiLiDear 260 (656)
T PRK12898 253 -SVLIDEAR 260 (656)
T ss_pred -ceeeccCC
Confidence 45666443
No 310
>PRK04195 replication factor C large subunit; Provisional
Probab=94.38 E-value=0.12 Score=64.33 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHccC
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAGF 711 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~~ 711 (1320)
.+.++|.||+|+||||.+=.+.-+.|+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~ 65 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGW 65 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 578999999999999988766665543
No 311
>KOG0391|consensus
Probab=94.34 E-value=0.29 Score=63.74 Aligned_cols=130 Identities=12% Similarity=0.177 Sum_probs=98.2
Q ss_pred cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCC-
Q psy1907 94 ADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNA- 172 (1320)
Q Consensus 94 ~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~- 172 (1320)
..++..+..++.++... +..+|||..-..-.+-+-..|+- .++..+-|-|+-.-++|+..++.|....
T Consensus 1259 cGKLQtLAiLLqQLk~e--ghRvLIfTQMtkmLDVLeqFLny---------HgylY~RLDg~t~vEqRQaLmerFNaD~R 1327 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSE--GHRVLIFTQMTKMLDVLEQFLNY---------HGYLYVRLDGNTSVEQRQALMERFNADRR 1327 (1958)
T ss_pred cchHHHHHHHHHHHHhc--CceEEehhHHHHHHHHHHHHHhh---------cceEEEEecCCccHHHHHHHHHHhcCCCc
Confidence 34566665555555433 56899998766666666666654 4889999999999999999999997654
Q ss_pred -eEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHH
Q psy1907 173 -RKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEV 251 (1320)
Q Consensus 173 -~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~ 251 (1320)
.-.|++|--...||++-|.|-||= ||..=+ |.--+++.-|+.|.|++..= ..|||+++..
T Consensus 1328 IfcfILSTrSggvGiNLtgADTVvF--------YDsDwN-------PtMDaQAQDrChRIGqtRDV----HIYRLISe~T 1388 (1958)
T KOG0391|consen 1328 IFCFILSTRSGGVGINLTGADTVVF--------YDSDWN-------PTMDAQAQDRCHRIGQTRDV----HIYRLISERT 1388 (1958)
T ss_pred eEEEEEeccCCccccccccCceEEE--------ecCCCC-------chhhhHHHHHHHhhcCccce----EEEEeeccch
Confidence 456899999999999999999993 333322 44457788899999998764 7899999865
Q ss_pred Hh
Q psy1907 252 LR 253 (1320)
Q Consensus 252 ~~ 253 (1320)
.+
T Consensus 1389 IE 1390 (1958)
T KOG0391|consen 1389 IE 1390 (1958)
T ss_pred HH
Confidence 43
No 312
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.32 E-value=0.079 Score=62.45 Aligned_cols=35 Identities=31% Similarity=0.461 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCC--EEEEEcCCCCchhcHHHHHHHHc
Q psy1907 675 KQDLIDAVRDHQ--VLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 675 ~~~il~~i~~~~--v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
.+.+..++..+. .++|.||+||||||.+=.+..+.
T Consensus 24 ~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 24 VERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 455666666665 79999999999999987665443
No 313
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=94.29 E-value=0.45 Score=61.88 Aligned_cols=121 Identities=22% Similarity=0.209 Sum_probs=79.3
Q ss_pred CcEEEEecCc--CHHHHHhhcCCCCEEEeCCccccee-E-----EEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCC
Q psy1907 51 LKLLISSATL--DAQKFSEFFDDAPVFRIPGRRFPVD-I-----YYTKAPEADYIDACVVSILQIHATQPLGDILVFLTG 122 (1320)
Q Consensus 51 ~qlIl~SATl--~~~~f~~~f~~~~vi~i~g~~~pV~-~-----~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t 122 (1320)
.++-.|+.|. ..+.|.+.+ +-+++.||.. .|+. . .|. ....+..+.+..+...|.. +..|||-+.|
T Consensus 375 ~kLsGMTGTa~te~~Ef~~iY-~l~Vv~IPTn-kP~~R~d~~d~vy~--t~~~K~~Ai~~ei~~~~~~--GrPVLIgT~S 448 (939)
T PRK12902 375 PKLAGMTGTAKTEEVEFEKTY-KLEVTVIPTN-RPRRRQDWPDQVYK--TEIAKWRAVANETAEMHKQ--GRPVLVGTTS 448 (939)
T ss_pred chhcccCCCCHHHHHHHHHHh-CCcEEEcCCC-CCeeeecCCCeEEc--CHHHHHHHHHHHHHHHHhC--CCCEEEeeCC
Confidence 3577788887 334466666 5667877754 2321 1 222 2345667777777777765 3569999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCC-CCHHHHHHHc-CCCCCCCeEEEEeCcccccCCCC
Q psy1907 123 QEEIETCNEILQDRVRRLGSKIKELIILPVYSN-LPTDMQTKIF-LPTPPNARKVVLATNIAETSLTI 188 (1320)
Q Consensus 123 ~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~-l~~~~r~~i~-~~~~~g~~kVlvATdIAe~gldI 188 (1320)
.+.-|.++..|.+. ++..-.|.+. ...+.-..|. +.-.+|. |-||||.|.||-||
T Consensus 449 Ve~SE~ls~~L~~~---------gi~h~vLNAk~~~~~~EA~IIa~AG~~Ga--VTIATNMAGRGTDI 505 (939)
T PRK12902 449 VEKSELLSALLQEQ---------GIPHNLLNAKPENVEREAEIVAQAGRKGA--VTIATNMAGRGTDI 505 (939)
T ss_pred HHHHHHHHHHHHHc---------CCchheeeCCCcchHhHHHHHHhcCCCCc--EEEeccCCCCCcCE
Confidence 99999999999873 5555556665 2222223344 3444454 78999999999998
No 314
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=94.29 E-value=0.57 Score=60.34 Aligned_cols=98 Identities=15% Similarity=0.080 Sum_probs=63.7
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCcc
Q psy1907 113 LGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNII 192 (1320)
Q Consensus 113 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~ 192 (1320)
+.+|-||.+|..-.+.+++..... .-.|+.+.|.-+..+ +. .=+..+||+=|++...|++++...
T Consensus 282 gknIcvfsSt~~~~~~v~~~~~~~---------~~~Vl~l~s~~~~~d---v~---~W~~~~VviYT~~itvG~Sf~~~H 346 (824)
T PF02399_consen 282 GKNICVFSSTVSFAEIVARFCARF---------TKKVLVLNSTDKLED---VE---SWKKYDVVIYTPVITVGLSFEEKH 346 (824)
T ss_pred CCcEEEEeChHHHHHHHHHHHHhc---------CCeEEEEcCCCCccc---cc---cccceeEEEEeceEEEEeccchhh
Confidence 457889999988888777766542 456777777655552 21 135689999999999999998654
Q ss_pred EEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCC
Q psy1907 193 YVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPL 237 (1320)
Q Consensus 193 ~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g 237 (1320)
+=-=+++.+...+ | .+..+..|..||+=.....
T Consensus 347 F~~~f~yvk~~~~----g--------pd~~s~~Q~lgRvR~l~~~ 379 (824)
T PF02399_consen 347 FDSMFAYVKPMSY----G--------PDMVSVYQMLGRVRSLLDN 379 (824)
T ss_pred ceEEEEEecCCCC----C--------CcHHHHHHHHHHHHhhccC
Confidence 3111222222211 1 2344678999999766555
No 315
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.27 E-value=0.08 Score=60.54 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=16.6
Q ss_pred CEEEEEcCCCCchhcHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~ 705 (1320)
..+++.||+||||||..-.+
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 46899999999999987443
No 316
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=94.21 E-value=0.59 Score=61.74 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=24.9
Q ss_pred ChhhHHHHHHHHH--------hCCEEEEEcCCCCchhcHHHHHH
Q psy1907 671 IYPFKQDLIDAVR--------DHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 671 i~~~~~~il~~i~--------~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
....++.|++.+. +..++++.|+|||||||..-...
T Consensus 325 ~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA 368 (775)
T TIGR00763 325 LKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIA 368 (775)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 3445566666432 34689999999999997765543
No 317
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.18 E-value=0.1 Score=60.20 Aligned_cols=89 Identities=24% Similarity=0.311 Sum_probs=54.6
Q ss_pred CEEEEEcCCCCchhcHHHHHHHHccCCCCC----cEEEEec-ccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccCCCC
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHEAGFTKDK----MKIGCTQ-PRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSER 760 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e~~~~~~~----~~I~~tQ-PRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~s~~ 760 (1320)
+.++|+|+||.||||.+-+|.-......++ ..|+++| |=.---..+...+.+++|.+.+. + +. .
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~------~--~~---~ 130 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP------R--DR---V 130 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC------C--CC---H
Confidence 579999999999999999998654433221 2355544 44445556667777777765422 1 11 1
Q ss_pred ccEEEEccHHHHHHHhcCCCCCCccEEEEcccc
Q psy1907 761 TIIKYMTDGTLHREFLSEPDLASYSVMIIDEAH 793 (1320)
Q Consensus 761 T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~H 793 (1320)
..+.+..-+ |||.+ +..++||||+|
T Consensus 131 ~~~~~~~~~-llr~~-------~vrmLIIDE~H 155 (302)
T PF05621_consen 131 AKLEQQVLR-LLRRL-------GVRMLIIDEFH 155 (302)
T ss_pred HHHHHHHHH-HHHHc-------CCcEEEeechH
Confidence 112222222 44443 67899999999
No 318
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=94.17 E-value=0.058 Score=53.47 Aligned_cols=59 Identities=31% Similarity=0.321 Sum_probs=38.2
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCc
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL 60 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl 60 (1320)
+|++++.+.+..... ...+++|||||+|.-......... ...........+++++|||+
T Consensus 85 ~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~-~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 85 GTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLG-LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred ECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHH-HHHHhhCCccceEEEEeccC
Confidence 477888887766543 678999999999953222211111 22233345667899999995
No 319
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.15 E-value=0.074 Score=59.71 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=24.9
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
+..+.+++|.|++||||||..=|++++.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678899999999999999999998863
No 320
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=94.13 E-value=0.25 Score=56.14 Aligned_cols=142 Identities=17% Similarity=0.147 Sum_probs=71.2
Q ss_pred HHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcE-E-EEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccCC
Q psy1907 681 AVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMK-I-GCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTS 758 (1320)
Q Consensus 681 ~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~-I-~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~s 758 (1320)
-+..+|.++|.|+.||||||.+=.+.....-...... + ++.+-|..-...+=+.+ ...|=++ .++. +
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I--------~~~~v~~-~~~~--~ 80 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV--------KGEVIAS-TFDE--P 80 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh--------ccEEEEe-cCCC--C
Confidence 3568999999999999999988554333222111222 3 33565443333333332 1111111 1111 1
Q ss_pred CCc--cEEEEccHHHHHHHhcCCCCCCccEEEEccccc-----ceEEEcCCccceeeccCCCCcceeEEEEecHhhH-HH
Q psy1907 759 ERT--IIKYMTDGTLHREFLSEPDLASYSVMIIDEAHP-----KVYVIDPGFCKQNNFNSRTGMESLTVVPISKASA-NQ 830 (1320)
Q Consensus 759 ~~T--~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HE-----R~~ViD~G~~k~~~y~~~~~~~~L~~~~iSkasa-~Q 830 (1320)
+.. ++.|.-..... .+. + -..--+++|||+|. |.++...|-- |..|- +.|-.+. .|
T Consensus 81 ~~~~~~~~~~~~~~a~-~~~-~--~G~~vll~iDei~r~a~a~~ev~~~~G~~------~sgG~------~~~~~~~~~q 144 (249)
T cd01128 81 PERHVQVAEMVLEKAK-RLV-E--HGKDVVILLDSITRLARAYNTVVPPSGKI------LSGGV------DANALHKPKR 144 (249)
T ss_pred HHHHHHHHHHHHHHHH-HHH-H--CCCCEEEEEECHHHhhhhhhhccccCCCC------CCCCc------ChhhhhhhHH
Confidence 111 11111111111 111 1 12345789999994 3566666643 32232 1222333 79
Q ss_pred HhcccCCc-cCCeEEEecch
Q psy1907 831 RAGRAGRV-AAGKCFRLYTA 849 (1320)
Q Consensus 831 R~GRAGR~-~pG~cyrLyt~ 849 (1320)
|-.|||-. ..|-.--|||-
T Consensus 145 ~~~~Ar~~~~~gsIt~l~T~ 164 (249)
T cd01128 145 FFGAARNIEEGGSLTIIATA 164 (249)
T ss_pred HHHHhcCCCCCCceEEeeeh
Confidence 99999985 67877778874
No 321
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.10 E-value=0.1 Score=65.91 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=23.9
Q ss_pred HHHHHHHHhCC---EEEEEcCCCCchhcHHHHHHH
Q psy1907 676 QDLIDAVRDHQ---VLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 676 ~~il~~i~~~~---v~ii~geTGsGKTTqvPq~l~ 707 (1320)
..|.+++.+++ .++++|+.|+||||..=.+.-
T Consensus 26 ~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAk 60 (700)
T PRK12323 26 RALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 (700)
T ss_pred HHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 45666676665 679999999999988755543
No 322
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.10 E-value=0.12 Score=63.00 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
-+.++.++.....+|+.|++|+||||.+-++-..
T Consensus 184 le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~ 217 (459)
T PRK11331 184 IETILKRLTIKKNIILQGPPGVGKTFVARRLAYL 217 (459)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHH
Confidence 4678888999999999999999999998665433
No 323
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.07 E-value=0.081 Score=68.85 Aligned_cols=32 Identities=22% Similarity=0.427 Sum_probs=22.7
Q ss_pred HHHHHHHhC---CEEEEEcCCCCchhcHHHHHHHH
Q psy1907 677 DLIDAVRDH---QVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 677 ~il~~i~~~---~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
.|..++.++ ...|++|++|+||||..=-|...
T Consensus 27 ~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 27 ALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred HHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 345556554 45699999999999887655443
No 324
>KOG0733|consensus
Probab=94.07 E-value=0.021 Score=69.99 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=16.6
Q ss_pred HHHHhcCCCCCCccEEEEcccc
Q psy1907 772 HREFLSEPDLASYSVMIIDEAH 793 (1320)
Q Consensus 772 lrel~~dp~L~~ys~iIiDE~H 793 (1320)
+||+...--=....+|+|||+.
T Consensus 271 iRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 271 IRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred HHHHHHHHhccCCeEEEeeccc
Confidence 6777655555567899999998
No 325
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.06 E-value=0.12 Score=64.51 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=21.9
Q ss_pred HHHHHHHHhC---CEEEEEcCCCCchhcHHHHH
Q psy1907 676 QDLIDAVRDH---QVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 676 ~~il~~i~~~---~v~ii~geTGsGKTTqvPq~ 705 (1320)
..|..++.++ ...+++|++|+||||..=.+
T Consensus 26 ~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~l 58 (509)
T PRK14958 26 RALSNALDQQYLHHAYLFTGTRGVGKTTISRIL 58 (509)
T ss_pred HHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHH
Confidence 3566666654 45799999999999876443
No 326
>PRK08116 hypothetical protein; Validated
Probab=94.06 E-value=0.12 Score=59.56 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=16.8
Q ss_pred hCCEEEEEcCCCCchhcHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq 704 (1320)
.+..++|.|++|+|||...-.
T Consensus 113 ~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 455799999999999966543
No 327
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=94.05 E-value=0.19 Score=64.75 Aligned_cols=157 Identities=24% Similarity=0.244 Sum_probs=87.7
Q ss_pred CCCccEEEEeCCCccCcCc-chHHHHHHHHhhc-----CCC----------------CcEEEEecCcC--HHHHHhhcCC
Q psy1907 16 LASYSVMIIDEAHERTLHT-DILFGLVKDIVRF-----RSD----------------LKLLISSATLD--AQKFSEFFDD 71 (1320)
Q Consensus 16 Ls~~s~iVLDEaHeR~l~t-d~ll~llk~l~~~-----r~~----------------~qlIl~SATl~--~~~f~~~f~~ 71 (1320)
..+.+++|+||.=-|++.. +.--|+-..+... .+. -++..|+.|.+ ...|..+++
T Consensus 308 Vrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~- 386 (822)
T COG0653 308 VRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYG- 386 (822)
T ss_pred EecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccC-
Confidence 6899999999997554332 2222333333221 111 23444555552 233555553
Q ss_pred CCEEEeCCccccee------EEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy1907 72 APVFRIPGRRFPVD------IYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIK 145 (1320)
Q Consensus 72 ~~vi~i~g~~~pV~------~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~ 145 (1320)
-.++.+|.. .|+. ..|. ....++.+.+..+...|.. ++.|||-..+.+.-|.+.+.|.+.
T Consensus 387 l~vv~iPTn-rp~~R~D~~D~vy~--t~~~K~~Aiv~~I~~~~~~--gqPvLvgT~sie~SE~ls~~L~~~--------- 452 (822)
T COG0653 387 LDVVVIPTN-RPIIRLDEPDLVYK--TEEEKFKAIVEDIKERHEK--GQPVLVGTVSIEKSELLSKLLRKA--------- 452 (822)
T ss_pred CceeeccCC-CcccCCCCcccccc--chHHHHHHHHHHHHHHHhc--CCCEEEcCcceecchhHHHHHHhc---------
Confidence 224444432 1221 1111 1234556777777777755 567999999999999999999863
Q ss_pred CeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCC
Q psy1907 146 ELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTID 189 (1320)
Q Consensus 146 ~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp 189 (1320)
++.-..|-+.-...+-..+-+.-..|. |=||||.|.||-||-
T Consensus 453 ~i~h~VLNAk~h~~EA~Iia~AG~~ga--VTiATNMAGRGTDIk 494 (822)
T COG0653 453 GIPHNVLNAKNHAREAEIIAQAGQPGA--VTIATNMAGRGTDIK 494 (822)
T ss_pred CCCceeeccccHHHHHHHHhhcCCCCc--cccccccccCCcccc
Confidence 333333333333344333333434444 569999999999983
No 328
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.05 E-value=0.089 Score=69.12 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=22.6
Q ss_pred HHHHHHHHhC---CEEEEEcCCCCchhcHHHHH
Q psy1907 676 QDLIDAVRDH---QVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 676 ~~il~~i~~~---~v~ii~geTGsGKTTqvPq~ 705 (1320)
+.|..+++++ ..+|+.|+.||||||..=-+
T Consensus 25 ~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~l 57 (824)
T PRK07764 25 EPLSTALDSGRINHAYLFSGPRGCGKTSSARIL 57 (824)
T ss_pred HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHH
Confidence 4566667664 46899999999999876544
No 329
>PHA02244 ATPase-like protein
Probab=94.01 E-value=0.074 Score=63.14 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
+..+..++..+..++|.|||||||||.+-++....+
T Consensus 109 ~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 109 TADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 456778888999999999999999998876655543
No 330
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.99 E-value=0.097 Score=62.79 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=20.2
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
+..+..++|+|+|||||||.+=-.+
T Consensus 146 ~~~~GlilI~G~TGSGKTT~l~al~ 170 (372)
T TIGR02525 146 LPAAGLGLICGETGSGKSTLAASIY 170 (372)
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHH
Confidence 3567788999999999999994443
No 331
>KOG0335|consensus
Probab=93.96 E-value=0.13 Score=62.56 Aligned_cols=118 Identities=25% Similarity=0.322 Sum_probs=79.9
Q ss_pred HHHhCCEEEEEcCCCCchhc--HHHH--HHHHccCCCC-----C--cEEEEecccHHHHHHHHHHHHHHhCCC-C-----
Q psy1907 681 AVRDHQVLIIEGETGSGKTT--QIPQ--YLHEAGFTKD-----K--MKIGCTQPRRVAAMSVSARVAEEMGVK-L----- 743 (1320)
Q Consensus 681 ~i~~~~v~ii~geTGsGKTT--qvPq--~l~e~~~~~~-----~--~~I~~tQPRRvAA~svA~rva~e~~~~-l----- 743 (1320)
.|.++.-++.+|+||||||- .+|- ++++.++... + -.+++.-|-|=-|..+-.+...--+.. +
T Consensus 107 ~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ 186 (482)
T KOG0335|consen 107 IISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVV 186 (482)
T ss_pred eeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeee
Confidence 37788889999999999996 4674 4666655321 1 257777888888888877765443211 1
Q ss_pred --CCeeeEEeecCccCCCCccEEEEccHHHHHHHhc-CCCCCCccEEEEcccccceEEEc-CCcc
Q psy1907 744 --GCEVGYAIRFEDCTSERTIIKYMTDGTLHREFLS-EPDLASYSVMIIDEAHPKVYVID-PGFC 804 (1320)
Q Consensus 744 --G~~VGY~irfe~~~s~~T~i~y~TdG~Llrel~~-dp~L~~ys~iIiDE~HER~~ViD-~G~~ 804 (1320)
|..+|++.|+- -....|.++|.|-|..-+-. .-.|.+...+|||||.-+ +| .||.
T Consensus 187 ygg~~~~~q~~~~---~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrM---lD~mgF~ 245 (482)
T KOG0335|consen 187 YGGTDLGAQLRFI---KRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRM---LDEMGFE 245 (482)
T ss_pred eCCcchhhhhhhh---ccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHh---hhhcccc
Confidence 23344444432 23577999999999876643 237888889999999754 55 5554
No 332
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=93.96 E-value=0.14 Score=68.53 Aligned_cols=85 Identities=21% Similarity=0.253 Sum_probs=52.0
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccCCCCc
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSERT 761 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~s~~T 761 (1320)
...+++++|+|..|+||||.+-...- .+...|.+|+..=|--.||.. +.++-|.. + .|
T Consensus 394 ~~~~r~~~v~G~AGTGKTt~l~~~~~--~~e~~G~~V~g~ApTgkAA~~----L~e~~Gi~-----a-----------~T 451 (1102)
T PRK13826 394 AGPARIAAVVGRAGAGKTTMMKAARE--AWEAAGYRVVGGALAGKAAEG----LEKEAGIQ-----S-----------RT 451 (1102)
T ss_pred hccCCeEEEEeCCCCCHHHHHHHHHH--HHHHcCCeEEEEcCcHHHHHH----HHHhhCCC-----e-----------ee
Confidence 35689999999999999999966532 111234457777776555533 44443322 0 11
Q ss_pred cEEEEccHHHHHHHhcCCCCCCccEEEEcccc
Q psy1907 762 IIKYMTDGTLHREFLSEPDLASYSVMIIDEAH 793 (1320)
Q Consensus 762 ~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~H 793 (1320)
....|++.-.....|...++|||||+.
T Consensus 452 -----Ias~ll~~~~~~~~l~~~~vlVIDEAs 478 (1102)
T PRK13826 452 -----LSSWELRWNQGRDQLDNKTVFVLDEAG 478 (1102)
T ss_pred -----HHHHHhhhccCccCCCCCcEEEEECcc
Confidence 122233332334467888999999998
No 333
>PHA00729 NTP-binding motif containing protein
Probab=93.95 E-value=0.089 Score=58.62 Aligned_cols=17 Identities=47% Similarity=0.542 Sum_probs=14.5
Q ss_pred EEEEEcCCCCchhcHHH
Q psy1907 687 VLIIEGETGSGKTTQIP 703 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvP 703 (1320)
.++|+|++|+||||..-
T Consensus 19 nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 19 SAVIFGKQGSGKTTYAL 35 (226)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999997543
No 334
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.91 E-value=0.1 Score=66.00 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=23.1
Q ss_pred HHHHHHHHHhCC---EEEEEcCCCCchhcHHHHH
Q psy1907 675 KQDLIDAVRDHQ---VLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 675 ~~~il~~i~~~~---v~ii~geTGsGKTTqvPq~ 705 (1320)
...|..++++++ .++++|+.|+||||..=-+
T Consensus 24 v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriL 57 (702)
T PRK14960 24 SRALSSALERGRLHHAYLFTGTRGVGKTTIARIL 57 (702)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 345666776664 6799999999999876443
No 335
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.91 E-value=0.15 Score=64.69 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=23.0
Q ss_pred HHHHHHHHhCC---EEEEEcCCCCchhcHHHHHH
Q psy1907 676 QDLIDAVRDHQ---VLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 676 ~~il~~i~~~~---v~ii~geTGsGKTTqvPq~l 706 (1320)
..|..++.+++ ..++.|++|+||||..=-+.
T Consensus 23 ~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lA 56 (584)
T PRK14952 23 EPLSSALDAGRINHAYLFSGPRGCGKTSSARILA 56 (584)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34666676654 57999999999998775443
No 336
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.87 E-value=0.16 Score=59.28 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=16.7
Q ss_pred CEEEEEcCCCCchhcHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l 706 (1320)
+.++|.|++|+||||.+=.+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia 51 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIA 51 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 568999999999997665443
No 337
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=93.86 E-value=0.4 Score=55.12 Aligned_cols=103 Identities=17% Similarity=0.105 Sum_probs=53.4
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHH---HccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCC-C--CeeeEEeecC--
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLH---EAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKL-G--CEVGYAIRFE-- 754 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~---e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~l-G--~~VGY~irfe-- 754 (1320)
....-.||.-++|+|||.++=-++. +.+-..+...+++.-|.-+.. ....|...-. + -.|-+-...+
T Consensus 23 ~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~-----~W~~E~~~~~~~~~~~v~~~~~~~~~ 97 (299)
T PF00176_consen 23 SPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLS-----QWKEEIEKWFDPDSLRVIIYDGDSER 97 (299)
T ss_dssp TTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHH-----HHHHHHHHHSGT-TS-EEEESSSCHH
T ss_pred cCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhh-----hhhhhhcccccccccccccccccccc
Confidence 3567889999999999999876664 332222212356666653332 2222322111 1 1222211111
Q ss_pred ----ccCCCCccEEEEccHHHH--------HHHhcCCCCCCccEEEEccccc
Q psy1907 755 ----DCTSERTIIKYMTDGTLH--------REFLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 755 ----~~~s~~T~i~y~TdG~Ll--------rel~~dp~L~~ys~iIiDE~HE 794 (1320)
...-.+..+..+|...+. ..+.. -+++.||+||+|.
T Consensus 98 ~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~----~~~~~vIvDEaH~ 145 (299)
T PF00176_consen 98 RRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ----IKWDRVIVDEAHR 145 (299)
T ss_dssp HHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT----SEEEEEEETTGGG
T ss_pred ccccccccccceeeecccccccccccccccccccc----ccceeEEEecccc
Confidence 223346679999999888 22222 3499999999995
No 338
>PRK06921 hypothetical protein; Provisional
Probab=93.86 E-value=0.13 Score=59.16 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=18.7
Q ss_pred hCCEEEEEcCCCCchhcHHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
.+..+++.|+||+|||+.+--+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia 138 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAA 138 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 46789999999999998775443
No 339
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=93.85 E-value=0.017 Score=54.99 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=35.0
Q ss_pred hhccccccccccccccccCchhhhhhc-cccc-chhHHHHHhhccccccccceeeeccCCCCCCc
Q psy1907 322 KRKSSEYKVGNGEDSFCVSPLYNLTIQ-SSSF-QSITIQCFASLQLHHPVIQLFTILPSSSTSSR 384 (1320)
Q Consensus 322 ~~~~~L~~lG~~~~~~~v~p~~~~~l~-~~~~-~~l~~~~~~~~~~~~p~~~~~~i~~~~~~~~~ 384 (1320)
++.+.||.+|+.|+.||++|.+|++|+ +..+ .|. .++++|++++++.++
T Consensus 13 d~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~--------------~~~~~i~a~ls~~~~ 63 (92)
T smart00847 13 DDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCL--------------DEILTIAAMLSVGDP 63 (92)
T ss_pred CCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcH--------------HHHHHHHHHhcCCCC
Confidence 334589999999999999999999976 4444 443 234456677666554
No 340
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=93.84 E-value=0.13 Score=68.58 Aligned_cols=55 Identities=16% Similarity=0.261 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHH
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSV 731 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~sv 731 (1320)
++.|...+..+++++|+|..|+||||.+-.. .+. +...|.+|+.+=|--.||..+
T Consensus 352 r~Av~~il~s~~v~vv~G~AGTGKTT~l~~~-~~~-~e~~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 352 ADALAHVTDGRDLGVVVGYAGTGKSAMLGVA-REA-WEAAGYEVRGAALSGIAAENL 406 (988)
T ss_pred HHHHHHHhcCCCeEEEEeCCCCCHHHHHHHH-HHH-HHHcCCeEEEecCcHHHHHHH
Confidence 4444445555789999999999999987433 221 112244677777877666444
No 341
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.82 E-value=0.13 Score=64.68 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=22.4
Q ss_pred HHHHHHHHhC---CEEEEEcCCCCchhcHHHHHH
Q psy1907 676 QDLIDAVRDH---QVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 676 ~~il~~i~~~---~v~ii~geTGsGKTTqvPq~l 706 (1320)
..|..++.++ ...+++|++|+||||..=.+.
T Consensus 26 ~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lA 59 (527)
T PRK14969 26 RALTNALEQQRLHHAYLFTGTRGVGKTTLARILA 59 (527)
T ss_pred HHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3455666654 357999999999998775543
No 342
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.81 E-value=0.19 Score=62.55 Aligned_cols=23 Identities=43% Similarity=0.557 Sum_probs=18.4
Q ss_pred HHHHHhcCCCCCCccEEEEcccc
Q psy1907 771 LHREFLSEPDLASYSVMIIDEAH 793 (1320)
Q Consensus 771 Llrel~~dp~L~~ys~iIiDE~H 793 (1320)
+...+..-|..++|.++||||||
T Consensus 107 I~~~~~~~P~~~~~KVvIIDEad 129 (486)
T PRK14953 107 LRDAVSYTPIKGKYKVYIIDEAH 129 (486)
T ss_pred HHHHHHhCcccCCeeEEEEEChh
Confidence 44445566888999999999998
No 343
>PRK09183 transposase/IS protein; Provisional
Probab=93.80 E-value=0.075 Score=60.78 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.8
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
+..+..++|.|++||||||..--+..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 667889999999999999988766544
No 344
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.77 E-value=0.18 Score=62.73 Aligned_cols=32 Identities=34% Similarity=0.576 Sum_probs=23.5
Q ss_pred HHHHHHHHh-CCEEEEEcCCCCchhcHHHHHHH
Q psy1907 676 QDLIDAVRD-HQVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 676 ~~il~~i~~-~~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
+.|..++.. +.+++|+|+|||||||-+=-+|.
T Consensus 232 ~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~ 264 (486)
T TIGR02533 232 SRFERLIRRPHGIILVTGPTGSGKTTTLYAALS 264 (486)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHh
Confidence 345555554 45899999999999999955543
No 345
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=93.76 E-value=0.67 Score=61.01 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHH--------hCCEEEEEcCCCCchhcHHH
Q psy1907 672 YPFKQDLIDAVR--------DHQVLIIEGETGSGKTTQIP 703 (1320)
Q Consensus 672 ~~~~~~il~~i~--------~~~v~ii~geTGsGKTTqvP 703 (1320)
...|+.|++.+. ...++++.|++|+||||..-
T Consensus 328 ~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~ 367 (784)
T PRK10787 328 ERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQ 367 (784)
T ss_pred HHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHH
Confidence 345666765554 35689999999999996653
No 346
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.70 E-value=0.13 Score=62.27 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCchhcHHHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
+.++|.|++|+||||.+=.++-+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999887754
No 347
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=93.69 E-value=0.02 Score=61.47 Aligned_cols=93 Identities=18% Similarity=0.277 Sum_probs=42.4
Q ss_pred EEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCc-------cCCCCc
Q psy1907 689 IIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFED-------CTSERT 761 (1320)
Q Consensus 689 ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~-------~~s~~T 761 (1320)
||+|+-|.||||.+=..+.... ..+..+|+||=|+.-++.++-+.+...+. ..||..+-.. ....+.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~-~~~~~~I~vtAP~~~~~~~lf~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~ 74 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALI-QKGKIRILVTAPSPENVQTLFEFAEKGLK-----ALGYKEEKKKRIGQIIKLRFNKQ 74 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSS-S-----EEEE-SS--S-HHHHHCC-------------------------------CC
T ss_pred CccCCCCCCHHHHHHHHHHHHH-HhcCceEEEecCCHHHHHHHHHHHHhhcc-----ccccccccccccccccccccccc
Confidence 6899999999999876553321 11224799999999999998887755432 2344321111 112356
Q ss_pred cEEEEccHHHHHHHhcCCCCCCccEEEEcccc
Q psy1907 762 IIKYMTDGTLHREFLSEPDLASYSVMIIDEAH 793 (1320)
Q Consensus 762 ~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~H 793 (1320)
.|.|+.-.-++.. -...+++|||||=
T Consensus 75 ~i~f~~Pd~l~~~------~~~~DlliVDEAA 100 (177)
T PF05127_consen 75 RIEFVAPDELLAE------KPQADLLIVDEAA 100 (177)
T ss_dssp C--B--HHHHCCT----------SCEEECTGG
T ss_pred eEEEECCHHHHhC------cCCCCEEEEechh
Confidence 6777776655443 1234899999993
No 348
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=93.59 E-value=0.11 Score=67.84 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=40.6
Q ss_pred hCC-EEEEEcCCCCchhcHHHHHH---HHccCCCCCcEEEEecccHHHHHHHHHHHHHH
Q psy1907 684 DHQ-VLIIEGETGSGKTTQIPQYL---HEAGFTKDKMKIGCTQPRRVAAMSVSARVAEE 738 (1320)
Q Consensus 684 ~~~-v~ii~geTGsGKTTqvPq~l---~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e 738 (1320)
..+ ++++.+|||+|||+..--+- .+.+ .....+|+-+-|=|.+.-..+.|+..-
T Consensus 212 ~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-~~~~~r~i~vlP~~t~ie~~~~r~~~~ 269 (733)
T COG1203 212 KRSLLVVLEAPTGYGKTEASLILALALLDEK-IKLKSRVIYVLPFRTIIEDMYRRAKEI 269 (733)
T ss_pred cccccEEEEeCCCCChHHHHHHHHHHHhhcc-ccccceEEEEccHHHHHHHHHHHHHhh
Confidence 444 99999999999998863332 2332 224457999999999999999998753
No 349
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.57 E-value=0.046 Score=48.43 Aligned_cols=18 Identities=44% Similarity=0.730 Sum_probs=16.5
Q ss_pred CEEEEEcCCCCchhcHHH
Q psy1907 686 QVLIIEGETGSGKTTQIP 703 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvP 703 (1320)
.+++|+|++||||||.+-
T Consensus 24 ~~tli~G~nGsGKSTllD 41 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLD 41 (62)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 489999999999999984
No 350
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.56 E-value=0.15 Score=55.15 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=23.8
Q ss_pred HHHHHHHhC---CEEEEEcCCCCchhcHHHHHHH
Q psy1907 677 DLIDAVRDH---QVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 677 ~il~~i~~~---~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
.|.+++.++ +.+++.|++|+||||.+=.+..
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~ 36 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAK 36 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 466777766 4589999999999988765543
No 351
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.52 E-value=0.12 Score=58.13 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=19.7
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
..+.++|.|++|||||+.+=.+..+
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~ 68 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAE 68 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999887655443
No 352
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=93.52 E-value=0.082 Score=68.70 Aligned_cols=128 Identities=24% Similarity=0.292 Sum_probs=85.4
Q ss_pred HhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHH--HHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhC--
Q psy1907 665 TKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQI--PQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMG-- 740 (1320)
Q Consensus 665 ~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqv--Pq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~-- 740 (1320)
.|+.|-..+|--+|+-++.=|+--|..-.||+|||.-. |-|+. ...+. .+.+.-|-.+ +|+|=+++|+
T Consensus 75 ~~R~lGm~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~--al~G~--~VhvvT~ndy----LA~RD~e~m~~l 146 (913)
T PRK13103 75 GKRVMGMRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLN--ALSGK--GVHVVTVNDY----LARRDANWMRPL 146 (913)
T ss_pred HHHHhCCCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHH--HHcCC--CEEEEeCCHH----HHHHHHHHHHHH
Confidence 35677788889999999999999999999999999865 44442 23322 3555556555 4555555554
Q ss_pred -CCCCCeeeEEeecCcc----CCCCccEEEEccHHH----HHHHhc----CCCCCCccEEEEcccccceEEEcCC
Q psy1907 741 -VKLGCEVGYAIRFEDC----TSERTIIKYMTDGTL----HREFLS----EPDLASYSVMIIDEAHPKVYVIDPG 802 (1320)
Q Consensus 741 -~~lG~~VGY~irfe~~----~s~~T~i~y~TdG~L----lrel~~----dp~L~~ys~iIiDE~HER~~ViD~G 802 (1320)
..+|-+||.-..-... ..-...|+|.|..-| ||.-+. +--..+..++||||+| .+.||-.
T Consensus 147 ~~~lGl~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvD--siLIDEA 219 (913)
T PRK13103 147 YEFLGLSVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVD--SILIDEA 219 (913)
T ss_pred hcccCCEEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhh--heecccc
Confidence 4578888864331111 011367999999987 554332 2245789999999999 4556633
No 353
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.49 E-value=0.14 Score=62.33 Aligned_cols=20 Identities=35% Similarity=0.503 Sum_probs=16.2
Q ss_pred CCEEEEEcCCCCchhcHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq 704 (1320)
...+++.|||||||||..=.
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~ 127 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQT 127 (412)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 35789999999999976543
No 354
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.48 E-value=0.18 Score=66.94 Aligned_cols=82 Identities=27% Similarity=0.370 Sum_probs=45.3
Q ss_pred CEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccCCCCccEEE
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSERTIIKY 765 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~s~~T~i~y 765 (1320)
.+++++||||+||||.. ..|++..+..++. +++..-.. ..-...++.-.|...| .|||.-
T Consensus 599 ~~~Lf~Gp~G~GKT~lA-~aLa~~l~~~~~~-~i~id~se---~~~~~~~~~LiG~~pg-y~g~~~-------------- 658 (857)
T PRK10865 599 GSFLFLGPTGVGKTELC-KALANFMFDSDDA-MVRIDMSE---FMEKHSVSRLVGAPPG-YVGYEE-------------- 658 (857)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHhhcCCCc-EEEEEhHH---hhhhhhHHHHhCCCCc-ccccch--------------
Confidence 37899999999999976 5666655543332 22222111 1111224444454444 445421
Q ss_pred EccHHHHHHHhcCCCCCCccEEEEcccc
Q psy1907 766 MTDGTLHREFLSEPDLASYSVMIIDEAH 793 (1320)
Q Consensus 766 ~TdG~Llrel~~dp~L~~ys~iIiDE~H 793 (1320)
.|.|...+... .|++|+|||++
T Consensus 659 --~g~l~~~v~~~----p~~vLllDEie 680 (857)
T PRK10865 659 --GGYLTEAVRRR----PYSVILLDEVE 680 (857)
T ss_pred --hHHHHHHHHhC----CCCeEEEeehh
Confidence 24444443333 47999999997
No 355
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.46 E-value=0.13 Score=65.56 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=23.4
Q ss_pred HHHHHHHHhCC---EEEEEcCCCCchhcHHHHHHH
Q psy1907 676 QDLIDAVRDHQ---VLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 676 ~~il~~i~~~~---v~ii~geTGsGKTTqvPq~l~ 707 (1320)
..|..++..++ .++++|++|+||||..=-+.-
T Consensus 26 ~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 26 KALQNALDEGRLHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 34556666554 689999999999998765543
No 356
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=93.38 E-value=0.044 Score=58.36 Aligned_cols=123 Identities=14% Similarity=0.120 Sum_probs=73.6
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCc--ccccCCCCCC
Q psy1907 113 LGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATN--IAETSLTIDN 190 (1320)
Q Consensus 113 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATd--IAe~gldIp~ 190 (1320)
+|.+|||+|+.+..+.+...+..... ..++.++. . .......+++.|..+.-.|++|+. -..-|||++|
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~-----~~~~~v~~-q---~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLE-----EKGIPVFV-Q---GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E------ETSCEEE-S---TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcc-----cccceeee-c---CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 69999999999999998888765320 01222221 1 244556677788888889999998 8888999986
Q ss_pred --ccEEEcCCCCccccccCCCCc------------cccceeccCHhhHHHHhhhcCCCCCCCCceEEEEe
Q psy1907 191 --IIYVIDPGFCKQNNFNSRTGM------------ESLTVVPISKASANQRAGVITGFNPLSDFRGCAHV 246 (1320)
Q Consensus 191 --I~~VID~g~~k~~~yd~~~g~------------~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L 246 (1320)
.+.||=.|+|..+.-|+.... ......|-..-...|=+||+=|.... +|..+.+
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D--~g~i~ll 147 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDD--YGVIILL 147 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT---EEEEEEE
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCC--cEEEEEE
Confidence 778888888765443332110 11223444555678889999888775 3555443
No 357
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.36 E-value=0.14 Score=66.79 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=16.5
Q ss_pred CEEEEEcCCCCchhcHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~ 705 (1320)
..++++||||||||+..-++
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~L 508 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQL 508 (758)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 36899999999999887544
No 358
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.26 E-value=0.12 Score=61.84 Aligned_cols=30 Identities=37% Similarity=0.681 Sum_probs=23.9
Q ss_pred HHHHHHH-hCCEEEEEcCCCCchhcHHHHHH
Q psy1907 677 DLIDAVR-DHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 677 ~il~~i~-~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
.+++++. .+..++|+|+|||||||.+=-++
T Consensus 125 ~~~~~~~~~~glilI~GpTGSGKTTtL~aLl 155 (358)
T TIGR02524 125 AIIDAIAPQEGIVFITGATGSGKSTLLAAII 155 (358)
T ss_pred HHHHHHhccCCEEEEECCCCCCHHHHHHHHH
Confidence 4566665 67899999999999999995444
No 359
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.25 E-value=0.2 Score=57.52 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=36.6
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhC
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMG 740 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~ 740 (1320)
..+++.++|++|+||||.+-.......-.....-++.+-+.|+++.+--+..++.+|
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~ 130 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIG 130 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcC
Confidence 458999999999999998776644321111112245566888888765554554443
No 360
>PF05729 NACHT: NACHT domain
Probab=93.23 E-value=0.055 Score=56.29 Aligned_cols=23 Identities=43% Similarity=0.692 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCchhcHHHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
++++|+|++||||||.+-.++.+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHH
Confidence 58999999999999999777654
No 361
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.17 E-value=0.17 Score=65.12 Aligned_cols=30 Identities=23% Similarity=0.525 Sum_probs=22.7
Q ss_pred HHHHHHHHhCC---EEEEEcCCCCchhcHHHHH
Q psy1907 676 QDLIDAVRDHQ---VLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 676 ~~il~~i~~~~---v~ii~geTGsGKTTqvPq~ 705 (1320)
..|..+++.++ ..++.||.|+||||..=.+
T Consensus 28 ~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 28 QTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHH
Confidence 45666777654 4689999999999887544
No 362
>KOG0344|consensus
Probab=93.14 E-value=0.28 Score=60.30 Aligned_cols=111 Identities=21% Similarity=0.188 Sum_probs=66.0
Q ss_pred HHHHHhCCEEEEEcCCCCchhcH--HHHHHHHccCC----CCCcEEEEecccHHHHHHHHHHHHHHhCCCC-CCeeeEEe
Q psy1907 679 IDAVRDHQVLIIEGETGSGKTTQ--IPQYLHEAGFT----KDKMKIGCTQPRRVAAMSVSARVAEEMGVKL-GCEVGYAI 751 (1320)
Q Consensus 679 l~~i~~~~v~ii~geTGsGKTTq--vPq~l~e~~~~----~~~~~I~~tQPRRvAA~svA~rva~e~~~~l-G~~VGY~i 751 (1320)
+-.+-+...++-+++||||||-- +|.+..=.... ..|-+.++.-|-| .+|+++..|+-.-. -..-+..+
T Consensus 167 ipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptr----eLa~Qi~re~~k~~~~~~t~~~a 242 (593)
T KOG0344|consen 167 IPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTR----ELAAQIYREMRKYSIDEGTSLRA 242 (593)
T ss_pred hhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchH----HHHHHHHHHHHhcCCCCCCchhh
Confidence 33456778899999999999643 57543322222 2344667788854 45566655552111 01111111
Q ss_pred ecCcc-----------CCCCccEEEEccHHHHHHHhcCC---CCCCccEEEEcccc
Q psy1907 752 RFEDC-----------TSERTIIKYMTDGTLHREFLSEP---DLASYSVMIIDEAH 793 (1320)
Q Consensus 752 rfe~~-----------~s~~T~i~y~TdG~Llrel~~dp---~L~~ys~iIiDE~H 793 (1320)
.+-.. ...+.+|...|.-=+..-+..++ +|+++-++|+||+.
T Consensus 243 ~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD 298 (593)
T KOG0344|consen 243 AQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD 298 (593)
T ss_pred hhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH
Confidence 11111 11245566777777777777776 89999999999998
No 363
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.14 E-value=0.22 Score=61.80 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=19.7
Q ss_pred HHHHHHHhC---CEEEEEcCCCCchhcHH
Q psy1907 677 DLIDAVRDH---QVLIIEGETGSGKTTQI 702 (1320)
Q Consensus 677 ~il~~i~~~---~v~ii~geTGsGKTTqv 702 (1320)
.|.+++..+ +-.+++|+.|+||||..
T Consensus 24 ~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 24 ILRNAFTLNKIPQSILLVGASGVGKTTCA 52 (491)
T ss_pred HHHHHHHcCCCCceEEEECCCCccHHHHH
Confidence 444566655 46899999999999854
No 364
>KOG0340|consensus
Probab=93.13 E-value=0.31 Score=56.56 Aligned_cols=117 Identities=21% Similarity=0.213 Sum_probs=83.7
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCC-CCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeec
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTK-DKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRF 753 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~-~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irf 753 (1320)
...-+-+|.+++-+|=.+-||||||+-.-.-+++---.. .|.=-++.-|-|=-|+.+|++... .|-.+|-.+..-+.|
T Consensus 34 Q~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~a-lGk~l~lK~~vivGG 112 (442)
T KOG0340|consen 34 QQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIA-LGKLLNLKVSVIVGG 112 (442)
T ss_pred HhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHH-hcccccceEEEEEcc
Confidence 445666777888888899999999998643333321111 121235567888888888888754 477777777777777
Q ss_pred CccC------CCCccEEEEccHHHHHHHhcCC-----CCCCccEEEEccc
Q psy1907 754 EDCT------SERTIIKYMTDGTLHREFLSEP-----DLASYSVMIIDEA 792 (1320)
Q Consensus 754 e~~~------s~~T~i~y~TdG~Llrel~~dp-----~L~~ys~iIiDE~ 792 (1320)
.+.. +.+..++.+|.|-|---+.+++ .+.+.-.+++|||
T Consensus 113 ~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEA 162 (442)
T KOG0340|consen 113 TDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEA 162 (442)
T ss_pred HHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecch
Confidence 7754 6678899999999888888875 4667778999998
No 365
>KOG0348|consensus
Probab=93.13 E-value=0.34 Score=58.84 Aligned_cols=122 Identities=22% Similarity=0.236 Sum_probs=87.7
Q ss_pred HhCCEEEEEcCCCCchhcH--HHH--HHHH--ccCC-CCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCc
Q psy1907 683 RDHQVLIIEGETGSGKTTQ--IPQ--YLHE--AGFT-KDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFED 755 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTq--vPq--~l~e--~~~~-~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~ 755 (1320)
.+.+=++|-+.||||||-- +|. -|.. ..+. ..|---+|.-|-|=-|+.+..-|..-..+--=---||-+..|.
T Consensus 172 L~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEk 251 (708)
T KOG0348|consen 172 LEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEK 251 (708)
T ss_pred hcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccc
Confidence 3366678899999999964 453 3322 1111 1233457788999999998888877665522222378899999
Q ss_pred cCCCCc------cEEEEccHHHHHHHhcCC--CCCCccEEEEcccccceEEEcCCcccee
Q psy1907 756 CTSERT------IIKYMTDGTLHREFLSEP--DLASYSVMIIDEAHPKVYVIDPGFCKQN 807 (1320)
Q Consensus 756 ~~s~~T------~i~y~TdG~Llrel~~dp--~L~~ys~iIiDE~HER~~ViD~G~~k~~ 807 (1320)
+.|++. .|+..|.|-|+-.|.+-. .++..--||+||+. -..|.||.|.-
T Consensus 252 kKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaD---rlleLGfekdi 308 (708)
T KOG0348|consen 252 KKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEAD---RLLELGFEKDI 308 (708)
T ss_pred cccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchh---HHHhccchhhH
Confidence 998865 489999999999999866 56778889999995 46678877653
No 366
>PRK08727 hypothetical protein; Validated
Probab=93.11 E-value=0.094 Score=58.99 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=17.6
Q ss_pred CCEEEEEcCCCCchhcHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l 706 (1320)
++.++|.|++|||||+.+--+.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~ 62 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALC 62 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3569999999999998775443
No 367
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.10 E-value=0.13 Score=63.27 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=28.9
Q ss_pred HHHHH-HHHhCCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 676 QDLID-AVRDHQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 676 ~~il~-~i~~~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
|+++. .+....+++|.|++|+||||.+=|++....
T Consensus 70 D~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a 105 (446)
T PRK11823 70 DRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA 105 (446)
T ss_pred HHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44553 567789999999999999999999988654
No 368
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.08 E-value=0.16 Score=64.77 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=24.1
Q ss_pred HHHHHHHHhCCE---EEEEcCCCCchhcHHHHHHH
Q psy1907 676 QDLIDAVRDHQV---LIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 676 ~~il~~i~~~~v---~ii~geTGsGKTTqvPq~l~ 707 (1320)
..|..++.++++ +|++|++|+||||.+=-+.-
T Consensus 26 ~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~ 60 (585)
T PRK14950 26 QTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAK 60 (585)
T ss_pred HHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 456667776644 59999999999998865543
No 369
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.08 E-value=0.2 Score=65.59 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=15.0
Q ss_pred EEEEEcCCCCchhcHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq 704 (1320)
+++++||||+|||+..-.
T Consensus 486 ~~lf~Gp~GvGKT~lA~~ 503 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQ 503 (731)
T ss_pred eEEEECCCCccHHHHHHH
Confidence 589999999999976543
No 370
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.06 E-value=0.42 Score=56.86 Aligned_cols=31 Identities=26% Similarity=0.507 Sum_probs=22.6
Q ss_pred HHHHHHHHHhCC---EEEEEcCCCCchhcHHHHH
Q psy1907 675 KQDLIDAVRDHQ---VLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 675 ~~~il~~i~~~~---v~ii~geTGsGKTTqvPq~ 705 (1320)
.+.|.+++.+++ ..++.||+|+||||..=.+
T Consensus 23 ~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~l 56 (355)
T TIGR02397 23 VQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIF 56 (355)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 345666666554 6799999999999876444
No 371
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.05 E-value=0.16 Score=64.66 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=21.6
Q ss_pred HHHHHHHhCC---EEEEEcCCCCchhcHHHHH
Q psy1907 677 DLIDAVRDHQ---VLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 677 ~il~~i~~~~---v~ii~geTGsGKTTqvPq~ 705 (1320)
.|..++.+++ ..+++|+.|+||||..=-+
T Consensus 27 ~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~l 58 (618)
T PRK14951 27 ALTNALTQQRLHHAYLFTGTRGVGKTTVSRIL 58 (618)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 4555666654 4799999999999977544
No 372
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.01 E-value=0.2 Score=59.20 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=16.4
Q ss_pred hCCEEEEEcCCCCchhcHH
Q psy1907 684 DHQVLIIEGETGSGKTTQI 702 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqv 702 (1320)
.+..+++.|+||+|||+.+
T Consensus 182 ~~~~Lll~G~~GtGKThLa 200 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS 200 (329)
T ss_pred cCCcEEEECCCCCcHHHHH
Confidence 4688999999999999654
No 373
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.00 E-value=0.081 Score=58.86 Aligned_cols=22 Identities=36% Similarity=0.709 Sum_probs=19.0
Q ss_pred EEEEcCCCCchhcHHHHHHHHc
Q psy1907 688 LIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 688 ~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
+||.|.+||||||.|=..+-+.
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5899999999999998887654
No 374
>KOG0333|consensus
Probab=92.98 E-value=0.13 Score=62.11 Aligned_cols=118 Identities=28% Similarity=0.341 Sum_probs=78.0
Q ss_pred HHHhCCEEEEEcCCCCchhc--HHHHHHHHccCC--------CCCcEEEEecccHHHHHHHHHHHHHH---hCCCCCCe-
Q psy1907 681 AVRDHQVLIIEGETGSGKTT--QIPQYLHEAGFT--------KDKMKIGCTQPRRVAAMSVSARVAEE---MGVKLGCE- 746 (1320)
Q Consensus 681 ~i~~~~v~ii~geTGsGKTT--qvPq~l~e~~~~--------~~~~~I~~tQPRRvAA~svA~rva~e---~~~~lG~~- 746 (1320)
...++.-+|-++|||||||- .+|..++=.-.. ..|..-++.-|-| .+|+.|-+| +++.+|..
T Consensus 278 l~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptR----eLaqqIeeEt~kf~~~lg~r~ 353 (673)
T KOG0333|consen 278 LGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTR----ELAQQIEEETNKFGKPLGIRT 353 (673)
T ss_pred chhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHH----HHHHHHHHHHHHhcccccceE
Confidence 45677788899999999993 345443321111 0133455666755 455666555 35666653
Q ss_pred ---eeEEeecCcc---CCCCccEEEEccHHHHHHHhc-CCCCCCccEEEEcccccceEEEcCCccce
Q psy1907 747 ---VGYAIRFEDC---TSERTIIKYMTDGTLHREFLS-EPDLASYSVMIIDEAHPKVYVIDPGFCKQ 806 (1320)
Q Consensus 747 ---VGY~irfe~~---~s~~T~i~y~TdG~Llrel~~-dp~L~~ys~iIiDE~HER~~ViD~G~~k~ 806 (1320)
|| +.+||.. .|....|+..|.|-|+--|-+ +-.|++...|++|||.+ -||-||.-+
T Consensus 354 vsvig-g~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadr---miDmgfE~d 416 (673)
T KOG0333|consen 354 VSVIG-GLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADR---MIDMGFEPD 416 (673)
T ss_pred EEEec-ccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhh---hhcccccHH
Confidence 33 3455554 577889999999999877643 33688999999999965 689888643
No 375
>PRK06893 DNA replication initiation factor; Validated
Probab=92.97 E-value=0.14 Score=57.37 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=19.7
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
.++.++|.|++|||||+.+-....+
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4677899999999999877554443
No 376
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.96 E-value=0.11 Score=58.35 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=32.9
Q ss_pred HHHHH-HHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEec
Q psy1907 676 QDLID-AVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQ 722 (1320)
Q Consensus 676 ~~il~-~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQ 722 (1320)
|++|. .+..+.+++|.|++||||||..-||+++..- .+.+-++++.
T Consensus 15 D~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~ 61 (234)
T PRK06067 15 DRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITT 61 (234)
T ss_pred HHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEc
Confidence 34442 5667899999999999999999999987532 2333345554
No 377
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=92.94 E-value=0.22 Score=63.27 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=24.7
Q ss_pred HHHHHHHHH-hCCEEEEEcCCCCchhcHHHHHHH
Q psy1907 675 KQDLIDAVR-DHQVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 675 ~~~il~~i~-~~~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
.+.|.+++. .+..++|+|+|||||||-+=-.|-
T Consensus 305 ~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~ 338 (564)
T TIGR02538 305 KALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALN 338 (564)
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHH
Confidence 445666665 467889999999999999854443
No 378
>PRK07952 DNA replication protein DnaC; Validated
Probab=92.92 E-value=0.17 Score=57.31 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=19.0
Q ss_pred CEEEEEcCCCCchhcHHHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
+.+++.|++|+|||+.+-.+..+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~ 122 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNE 122 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999987655544
No 379
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.91 E-value=0.13 Score=57.00 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=21.1
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
..+..++|.|++||||||.+=.+..+
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999998665544
No 380
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=92.91 E-value=0.14 Score=59.33 Aligned_cols=61 Identities=26% Similarity=0.329 Sum_probs=44.0
Q ss_pred HHHHHHHhCCEEEEEcCCCCchhcHHHH---HHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhC
Q psy1907 677 DLIDAVRDHQVLIIEGETGSGKTTQIPQ---YLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMG 740 (1320)
Q Consensus 677 ~il~~i~~~~v~ii~geTGsGKTTqvPq---~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~ 740 (1320)
+++.. .++.++|.|..||||||.+-. +|+..+-. ...+|+|+-+-+.||..+..|+...++
T Consensus 7 ~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~-~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 7 RIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGV-PPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp HHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSS-TGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccC-ChHHheecccCHHHHHHHHHHHHHhcC
Confidence 34444 578888899999999998865 34444422 223599999999999999999988654
No 381
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.89 E-value=0.23 Score=56.74 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=21.2
Q ss_pred HHHHHHHhCCEEEEEcCCCCchhcHHH
Q psy1907 677 DLIDAVRDHQVLIIEGETGSGKTTQIP 703 (1320)
Q Consensus 677 ~il~~i~~~~v~ii~geTGsGKTTqvP 703 (1320)
.+.+.+.++..+++.|++|+|||...-
T Consensus 97 ~~~~~~~~~~nl~l~G~~G~GKThLa~ 123 (254)
T COG1484 97 SLVEFFERGENLVLLGPPGVGKTHLAI 123 (254)
T ss_pred HHHHHhccCCcEEEECCCCCcHHHHHH
Confidence 455556688899999999999995543
No 382
>PRK10436 hypothetical protein; Provisional
Probab=92.89 E-value=0.24 Score=61.12 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=24.6
Q ss_pred HHHHHHHH-hCCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 676 QDLIDAVR-DHQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 676 ~~il~~i~-~~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
+.|.+++. .+-.++|+|+|||||||-+=..|.+
T Consensus 208 ~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~ 241 (462)
T PRK10436 208 AQFRQALQQPQGLILVTGPTGSGKTVTLYSALQT 241 (462)
T ss_pred HHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHh
Confidence 34555554 5668999999999999999554544
No 383
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.88 E-value=0.19 Score=58.34 Aligned_cols=35 Identities=31% Similarity=0.534 Sum_probs=26.2
Q ss_pred EEEEEcCCCCchhcHH---HHHHHHccCCCCCcEEEEe
Q psy1907 687 VLIIEGETGSGKTTQI---PQYLHEAGFTKDKMKIGCT 721 (1320)
Q Consensus 687 v~ii~geTGsGKTTqv---Pq~l~e~~~~~~~~~I~~t 721 (1320)
.+++.|||||||||.. .+++++.|+...+.-+.++
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 5899999999999965 6778887776555434444
No 384
>COG3910 Predicted ATPase [General function prediction only]
Probab=92.87 E-value=0.095 Score=56.11 Aligned_cols=51 Identities=29% Similarity=0.468 Sum_probs=37.7
Q ss_pred hHHHHhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCC
Q psy1907 661 NIEETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTK 713 (1320)
Q Consensus 661 ~i~~~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~ 713 (1320)
+.++.--+||+..+.++-|+ -+.+|++|+||.||||||.+--+-.-.|+..
T Consensus 15 ~~~eYp~slPa~r~l~~~Le--F~apIT~i~GENGsGKSTLLEaiA~~~~~n~ 65 (233)
T COG3910 15 SFEEYPFSLPAFRHLEERLE--FRAPITFITGENGSGKSTLLEAIAAGMGFNA 65 (233)
T ss_pred chhhCcccchHHHhhhhhcc--ccCceEEEEcCCCccHHHHHHHHHhhccccc
Confidence 34455568888888776222 3678999999999999999987665555543
No 385
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.86 E-value=0.11 Score=63.12 Aligned_cols=54 Identities=22% Similarity=0.289 Sum_probs=37.2
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHccCCCCCc--EEEEecccHHHHHHHHHHHHHHhC
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAGFTKDKM--KIGCTQPRRVAAMSVSARVAEEMG 740 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~--~I~~tQPRRvAA~svA~rva~e~~ 740 (1320)
..|+.++|.+||||||-+-.+-... ...|. .++.+=|-|.||..--+..|+..+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l--~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~ 155 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYY--QRKGFKPCLVCADTFRAGAFDQLKQNATKAR 155 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCCEEEEcCcccchhHHHHHHHHhhccC
Confidence 3589999999999999987664322 12222 456688889888866555665554
No 386
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.84 E-value=0.097 Score=54.30 Aligned_cols=74 Identities=22% Similarity=0.342 Sum_probs=45.8
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHHHHccCCC-CCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccCCCC
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYLHEAGFTK-DKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSER 760 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~-~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~s~~ 760 (1320)
+..++++.|.|+.||||||.+=-. .|... ..+.|.+-. + ..|||.-.
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l---~G~~~~~~G~i~~~~-~--------------------~~i~~~~~-------- 70 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLI---AGELEPDEGIVTWGS-T--------------------VKIGYFEQ-------- 70 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH---cCCCCCCceEEEECC-e--------------------EEEEEEcc--------
Confidence 457899999999999999988543 23221 122343321 0 24555322
Q ss_pred ccEEEEccHHHHHHHhcCCCCCCccEEEEccc
Q psy1907 761 TIIKYMTDGTLHREFLSEPDLASYSVMIIDEA 792 (1320)
Q Consensus 761 T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~ 792 (1320)
...|+.-|-.+.--.+.+.+++|+||-
T Consensus 71 -----lS~G~~~rv~laral~~~p~illlDEP 97 (144)
T cd03221 71 -----LSGGEKMRLALAKLLLENPNLLLLDEP 97 (144)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 667765555444445556679999987
No 387
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.83 E-value=0.098 Score=56.10 Aligned_cols=96 Identities=18% Similarity=0.229 Sum_probs=52.5
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHHHHccCCC-CCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccCCCC
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYLHEAGFTK-DKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSER 760 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~-~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~s~~ 760 (1320)
|..++++.|.|+.||||||.+=... |... ..+.|.+ .-..+... ...+ ...+||.-....-. +.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~---G~~~~~~G~i~~-~g~~~~~~--~~~~--------~~~i~~~~q~~~~~-~~ 89 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLT---GDLKPQQGEITL-DGVPVSDL--EKAL--------SSLISVLNQRPYLF-DT 89 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh---ccCCCCCCEEEE-CCEEHHHH--HHHH--------HhhEEEEccCCeee-cc
Confidence 4678999999999999999886543 3321 1224443 22222221 1111 12355542211000 11
Q ss_pred cc----EEEEccHHHHHHHhcCCCCCCccEEEEccc
Q psy1907 761 TI----IKYMTDGTLHREFLSEPDLASYSVMIIDEA 792 (1320)
Q Consensus 761 T~----i~y~TdG~Llrel~~dp~L~~ys~iIiDE~ 792 (1320)
|. +.....|+.-|-.+.--.+.+..++|+||.
T Consensus 90 tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP 125 (178)
T cd03247 90 TLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEP 125 (178)
T ss_pred cHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 11 445667776655555556667789999997
No 388
>PTZ00293 thymidine kinase; Provisional
Probab=92.80 E-value=0.23 Score=54.90 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=28.3
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEeccc
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPR 724 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPR 724 (1320)
..+.+|.|+-||||||.+=+.+....+ .|+++++..|.
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~--ag~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTY--SEKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHH--cCCceEEEEec
Confidence 567899999999999998887765432 34457777773
No 389
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.77 E-value=0.18 Score=59.80 Aligned_cols=31 Identities=39% Similarity=0.390 Sum_probs=25.3
Q ss_pred HHHHHHHHhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 676 QDLIDAVRDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 676 ~~il~~i~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
+-+-.+++....++|+|+|||||||.+--.+
T Consensus 151 ~~L~~~v~~~~nili~G~tgSGKTTll~aL~ 181 (332)
T PRK13900 151 EFLEHAVISKKNIIISGGTSTGKTTFTNAAL 181 (332)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHH
Confidence 3345577889999999999999999995544
No 390
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.73 E-value=0.21 Score=63.30 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=22.8
Q ss_pred HHHHHHHHHhCC---EEEEEcCCCCchhcHHHHH
Q psy1907 675 KQDLIDAVRDHQ---VLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 675 ~~~il~~i~~~~---v~ii~geTGsGKTTqvPq~ 705 (1320)
...|..++.+++ .+++.|+.|+||||..=.+
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiAril 58 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIF 58 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHH
Confidence 345566676654 5889999999999876544
No 391
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.72 E-value=0.17 Score=54.52 Aligned_cols=77 Identities=23% Similarity=0.297 Sum_probs=46.5
Q ss_pred HHHhCCEEEEEcCCCCchhcHHHHHHHHccCCC-CCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccCCC
Q psy1907 681 AVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTK-DKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSE 759 (1320)
Q Consensus 681 ~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~-~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~s~ 759 (1320)
.+..+.++.|+|+.||||||.+=-.. |+.. ..+.|.+- |..+||.-. +.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~----------------------g~~i~~~~q--~~--- 70 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILA---GQLIPNGDNDEWD----------------------GITPVYKPQ--YI--- 70 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHH---cCCCCCCcEEEEC----------------------CEEEEEEcc--cC---
Confidence 46788999999999999999986432 3221 22334332 223555321 10
Q ss_pred CccEEEEccHHHHHHHhcCCCCCCccEEEEccc
Q psy1907 760 RTIIKYMTDGTLHREFLSEPDLASYSVMIIDEA 792 (1320)
Q Consensus 760 ~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~ 792 (1320)
.+.-|+--|-.+.--.+.+.+++|+||-
T Consensus 71 -----~LSgGq~qrv~laral~~~p~lllLDEP 98 (177)
T cd03222 71 -----DLSGGELQRVAIAAALLRNATFYLFDEP 98 (177)
T ss_pred -----CCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 0666765444444444555678999997
No 392
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.71 E-value=0.064 Score=59.00 Aligned_cols=34 Identities=26% Similarity=0.558 Sum_probs=27.0
Q ss_pred HHHHHHHHh--CCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 676 QDLIDAVRD--HQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 676 ~~il~~i~~--~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
++|.+.+.. ++.++|.|+.|+||||.+=.++-..
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 345556665 5899999999999999998887654
No 393
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.67 E-value=0.26 Score=58.25 Aligned_cols=32 Identities=34% Similarity=0.398 Sum_probs=24.1
Q ss_pred HHHHHHHH----hCCEEEEEcCCCCchhcHHHHHHH
Q psy1907 676 QDLIDAVR----DHQVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 676 ~~il~~i~----~~~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
.+|++.+. ...++.|+|++||||||.+-.++.
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 45666553 345899999999999999877543
No 394
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.64 E-value=0.2 Score=59.80 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=18.8
Q ss_pred CEEEEEcCCCCchhcHHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
+.++|.|++|+||||.+=.++.
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~ 62 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMK 62 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999866654
No 395
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=92.63 E-value=0.55 Score=63.21 Aligned_cols=35 Identities=37% Similarity=0.447 Sum_probs=29.0
Q ss_pred CccEEEEccHHHHHHHhc-CCCCCCccEEEEccccc
Q psy1907 760 RTIIKYMTDGTLHREFLS-EPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 760 ~T~i~y~TdG~Llrel~~-dp~L~~ys~iIiDE~HE 794 (1320)
+..|+.+-.-+|+..+.. ++.|..|+++||||||.
T Consensus 431 ~AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~ 466 (928)
T PRK08074 431 FADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHH 466 (928)
T ss_pred cCCEEEECHHHHHHHHhhhcccCCCCCeEEEECCch
Confidence 346888899999998844 45789999999999994
No 396
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.61 E-value=0.13 Score=56.39 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCchhcHHHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
-+++|+|+|||||||.+-.++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999655544
No 397
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.56 E-value=0.4 Score=55.94 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=22.2
Q ss_pred HHHHHHHHhC--CEEEEEcCCCCchhcHHHHHHH
Q psy1907 676 QDLIDAVRDH--QVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 676 ~~il~~i~~~--~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
+.+..+++++ ..++|.|++||||||.+=.+.-
T Consensus 27 ~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~ 60 (319)
T PRK00440 27 ERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAR 60 (319)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3445555543 3589999999999988755443
No 398
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.55 E-value=0.18 Score=60.50 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=23.3
Q ss_pred HHHHHHHHhCC---EEEEEcCCCCchhcHHHHH
Q psy1907 676 QDLIDAVRDHQ---VLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 676 ~~il~~i~~~~---v~ii~geTGsGKTTqvPq~ 705 (1320)
+.|.+.+++++ .+++.|++|+||||.+-.+
T Consensus 27 ~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 27 NTLLNAIENNHLAQALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 45666676654 7899999999999887655
No 399
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.54 E-value=0.15 Score=64.32 Aligned_cols=30 Identities=27% Similarity=0.496 Sum_probs=22.7
Q ss_pred HHHHHHHHhC---CEEEEEcCCCCchhcHHHHH
Q psy1907 676 QDLIDAVRDH---QVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 676 ~~il~~i~~~---~v~ii~geTGsGKTTqvPq~ 705 (1320)
..|..++.++ +..++.|+.|+||||..=-+
T Consensus 26 ~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~l 58 (605)
T PRK05896 26 KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIF 58 (605)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHH
Confidence 4566677664 46799999999999887544
No 400
>KOG0951|consensus
Probab=92.51 E-value=0.94 Score=60.05 Aligned_cols=208 Identities=15% Similarity=0.165 Sum_probs=120.1
Q ss_pred CCCCccEEEEeCCCccC-cC---cchHHHHHHHHhhcCCCCcEEEEecCc-CHHHHHhhcCCCCEEEeC--CcccceeEE
Q psy1907 15 DLASYSVMIIDEAHERT-LH---TDILFGLVKDIVRFRSDLKLLISSATL-DAQKFSEFFDDAPVFRIP--GRRFPVDIY 87 (1320)
Q Consensus 15 ~Ls~~s~iVLDEaHeR~-l~---td~ll~llk~l~~~r~~~qlIl~SATl-~~~~f~~~f~~~~vi~i~--g~~~pV~~~ 87 (1320)
....+++.|.||.|.-+ .+ ..++.+.-.+...+-+..|++.+|..+ |+..+ -++....+++.. .|..|.+++
T Consensus 1250 ~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana~d~-ig~s~~~v~Nf~p~~R~~Pl~i~ 1328 (1674)
T KOG0951|consen 1250 SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLANARDL-IGASSSGVFNFSPSVRPVPLEIH 1328 (1674)
T ss_pred hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhccchhh-ccccccceeecCcccCCCceeEE
Confidence 46789999999999532 11 112233222333456778999999988 76666 344444455554 355666665
Q ss_pred EEcCCccchHH---H----HHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHH------------hhcCCC-CCe
Q psy1907 88 YTKAPEADYID---A----CVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVR------------RLGSKI-KEL 147 (1320)
Q Consensus 88 y~~~~~~~~l~---~----~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~------------~l~~~~-~~~ 147 (1320)
........+.. + ....+.+ |.. .+...+||+|++..+..++.-|-.... +..... ..+
T Consensus 1329 i~~~~~~~~~~~~~am~~~~~~ai~~-~a~-~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l 1406 (1674)
T KOG0951|consen 1329 IQSVDISHFESRMLAMTKPTYTAIVR-HAG-NRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESL 1406 (1674)
T ss_pred EEEeccchhHHHHHHhhhhHHHHHHH-Hhc-CCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcc
Confidence 43332222211 1 1111222 222 256789999999998887765532111 000000 011
Q ss_pred EEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHH
Q psy1907 148 IILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQR 227 (1320)
Q Consensus 148 ~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR 227 (1320)
....=|-+|+...+.-+-.-|..|.+.|.|..-- --|+-... +.||-.| ...||.+.. ...+-+.++..|+
T Consensus 1407 ~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~-~lVvvmg---t~~ydg~e~----~~~~y~i~~ll~m 1477 (1674)
T KOG0951|consen 1407 KHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKA-HLVVVMG---TQYYDGKEH----SYEDYPIAELLQM 1477 (1674)
T ss_pred cccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccc-eEEEEec---ceeeccccc----ccccCchhHHHHH
Confidence 1111288999999888877888999999887543 33433321 2333223 234666554 4467788999999
Q ss_pred hhhcCCC
Q psy1907 228 AGVITGF 234 (1320)
Q Consensus 228 ~GRAGR~ 234 (1320)
.|+|.|.
T Consensus 1478 ~G~a~~~ 1484 (1674)
T KOG0951|consen 1478 VGLASGA 1484 (1674)
T ss_pred hhhhcCC
Confidence 9999984
No 401
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.51 E-value=0.092 Score=55.79 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=21.0
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
+..++++.|+|+.||||||.+=-.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l 47 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRAL 47 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Confidence 468899999999999999988654
No 402
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.49 E-value=0.14 Score=61.17 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCC---EEEEEcCCCCchhcHHHHHH
Q psy1907 675 KQDLIDAVRDHQ---VLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 675 ~~~il~~i~~~~---v~ii~geTGsGKTTqvPq~l 706 (1320)
...|+.++.+++ .++|+|++|+||||..=.+.
T Consensus 32 ~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA 66 (351)
T PRK09112 32 EAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLA 66 (351)
T ss_pred HHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHH
Confidence 456788888777 59999999999999886543
No 403
>KOG0385|consensus
Probab=92.44 E-value=0.78 Score=58.05 Aligned_cols=114 Identities=14% Similarity=0.127 Sum_probs=83.5
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCC---CCeEEEEeCcccccCCCCC
Q psy1907 113 LGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPP---NARKVVLATNIAETSLTID 189 (1320)
Q Consensus 113 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~---g~~kVlvATdIAe~gldIp 189 (1320)
+.++|||-.-- .+-.+|+.-+. ..++..+-+-|+.+.++|...++.|.. .+.-.+++|=....||++-
T Consensus 487 GhRVLIFSQmt----~mLDILeDyc~-----~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~ 557 (971)
T KOG0385|consen 487 GHRVLIFSQMT----RMLDILEDYCM-----LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLT 557 (971)
T ss_pred CCeEEEeHHHH----HHHHHHHHHHH-----hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccc
Confidence 46799996433 33334443321 248899999999999999999888843 3566789999999999999
Q ss_pred CccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHHHhh
Q psy1907 190 NIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEVLRG 254 (1320)
Q Consensus 190 ~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~~~ 254 (1320)
..+.||-++ .-|||... -++.+|+.|.|-..+= .+|+|.+++..+.
T Consensus 558 aADtVIlyD----SDWNPQ~D-----------LQAmDRaHRIGQ~K~V----~V~RLitentVEe 603 (971)
T KOG0385|consen 558 AADTVILYD----SDWNPQVD-----------LQAMDRAHRIGQKKPV----VVYRLITENTVEE 603 (971)
T ss_pred cccEEEEec----CCCCchhh-----------hHHHHHHHhhCCcCce----EEEEEeccchHHH
Confidence 999999432 12444433 5788899999988875 7999999876543
No 404
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=92.42 E-value=0.22 Score=61.99 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=15.2
Q ss_pred hCCEEEEEcCCCCchhcHH
Q psy1907 684 DHQVLIIEGETGSGKTTQI 702 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqv 702 (1320)
...-++|.||+|||||+.+
T Consensus 215 ~p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CCcceEEECCCCCcHHHHH
Confidence 3456899999999999644
No 405
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=92.41 E-value=0.22 Score=58.40 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=22.1
Q ss_pred HHHHHHHHhC---CEEEEEcCCCCchhcHHHHHHH
Q psy1907 676 QDLIDAVRDH---QVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 676 ~~il~~i~~~---~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
+.|.+.+.++ .++++.||+|+||||.+=.+..
T Consensus 31 ~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~ 65 (316)
T PHA02544 31 ETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCN 65 (316)
T ss_pred HHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHH
Confidence 3455555555 3666799999999998765543
No 406
>KOG0392|consensus
Probab=92.38 E-value=0.47 Score=62.51 Aligned_cols=115 Identities=16% Similarity=0.163 Sum_probs=83.4
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCC-CeEE-EEeCcccccCCCCCCc
Q psy1907 114 GDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPN-ARKV-VLATNIAETSLTIDNI 191 (1320)
Q Consensus 114 g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g-~~kV-lvATdIAe~gldIp~I 191 (1320)
.+|||||.=+..++-+-+-|-+ +..+.+...-|-|+.|+..|.++.++|.++ ++.| +++|-|...|++.-|.
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k------~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGA 1414 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFK------KYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGA 1414 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhh------hhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCC
Confidence 4699999998888877776654 223677788899999999999999999888 6666 5789999999999999
Q ss_pred cEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHHHh
Q psy1907 192 IYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEVLR 253 (1320)
Q Consensus 192 ~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~~ 253 (1320)
|-||=..- -|||-.. -+++-|+.|-|-..- --+|||+++.-++
T Consensus 1415 DTVVFvEH----DWNPMrD-----------LQAMDRAHRIGQKrv----VNVyRlItrGTLE 1457 (1549)
T KOG0392|consen 1415 DTVVFVEH----DWNPMRD-----------LQAMDRAHRIGQKRV----VNVYRLITRGTLE 1457 (1549)
T ss_pred ceEEEEec----CCCchhh-----------HHHHHHHHhhcCcee----eeeeeehhcccHH
Confidence 99993211 1333322 345556666654432 2589998876443
No 407
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.34 E-value=0.24 Score=63.00 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCC---EEEEEcCCCCchhcHHHHHH
Q psy1907 675 KQDLIDAVRDHQ---VLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 675 ~~~il~~i~~~~---v~ii~geTGsGKTTqvPq~l 706 (1320)
...|..++.+++ ..++.|+.|+||||..=.+.
T Consensus 25 ~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~la 59 (576)
T PRK14965 25 SRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILA 59 (576)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 355666777664 46899999999999875543
No 408
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.26 E-value=0.14 Score=53.53 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=20.7
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
+.+++++.|+|++||||||.+=..
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l 45 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAI 45 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999988654
No 409
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.26 E-value=0.16 Score=58.31 Aligned_cols=33 Identities=33% Similarity=0.529 Sum_probs=25.0
Q ss_pred HHHHHHHH-hCCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 676 QDLIDAVR-DHQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 676 ~~il~~i~-~~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
+.|.+++. .+.+++|+|+|||||||.+-.++..
T Consensus 70 ~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 70 EIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhh
Confidence 44556665 4568999999999999999665543
No 410
>PLN03025 replication factor C subunit; Provisional
Probab=92.23 E-value=0.24 Score=58.34 Aligned_cols=23 Identities=48% Similarity=0.693 Sum_probs=18.0
Q ss_pred CEEEEEcCCCCchhcHHHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
+.+++.||+|+||||.+=.+..+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999887554433
No 411
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=92.23 E-value=0.14 Score=54.77 Aligned_cols=96 Identities=22% Similarity=0.331 Sum_probs=49.4
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHHHHccCCC-CCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCcc-CCC
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYLHEAGFTK-DKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDC-TSE 759 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~-~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~-~s~ 759 (1320)
+..++++.|+|+.||||||.+=-.. |... ..+.|.+- .+.+...... +. ...+||.- .+. .-+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~---G~~~~~~G~i~~~-g~~~~~~~~~-~~--------~~~i~~~~--q~~~~~~ 89 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLIL---GLLRPTSGRVRLD-GADISQWDPN-EL--------GDHVGYLP--QDDELFS 89 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHH---hccCCCCCeEEEC-CEEcccCCHH-HH--------HhheEEEC--CCCcccc
Confidence 4578999999999999999886543 2221 12234331 1111111110 01 11245531 111 011
Q ss_pred CccEEE-EccHHHHHHHhcCCCCCCccEEEEccc
Q psy1907 760 RTIIKY-MTDGTLHREFLSEPDLASYSVMIIDEA 792 (1320)
Q Consensus 760 ~T~i~y-~TdG~Llrel~~dp~L~~ys~iIiDE~ 792 (1320)
.|..-. ...|+.-|-.+.--.+.+.+++|+||-
T Consensus 90 ~tv~~~lLS~G~~qrv~la~al~~~p~~lllDEP 123 (173)
T cd03246 90 GSIAENILSGGQRQRLGLARALYGNPRILVLDEP 123 (173)
T ss_pred CcHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 111111 667766555555555667789999987
No 412
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.16 E-value=0.44 Score=60.73 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=22.0
Q ss_pred HHHHHHHHhCC---EEEEEcCCCCchhcHHHHH
Q psy1907 676 QDLIDAVRDHQ---VLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 676 ~~il~~i~~~~---v~ii~geTGsGKTTqvPq~ 705 (1320)
..|..++..++ -++++|+.|+||||..=.+
T Consensus 34 ~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~l 66 (598)
T PRK09111 34 RTLTNAFETGRIAQAFMLTGVRGVGKTTTARIL 66 (598)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHH
Confidence 44556665554 6899999999999876443
No 413
>KOG1000|consensus
Probab=92.15 E-value=0.38 Score=57.86 Aligned_cols=81 Identities=20% Similarity=0.230 Sum_probs=65.6
Q ss_pred hCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCC--CeEEEEeCcccccCCC
Q psy1907 110 TQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPN--ARKVVLATNIAETSLT 187 (1320)
Q Consensus 110 ~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g--~~kVlvATdIAe~gld 187 (1320)
..++.+.|||+--+.-.+.+...++++ ++..+-+-|.-+...|....+.|... ..--|++-..|..|||
T Consensus 489 d~~~~KflVFaHH~~vLd~Iq~~~~~r---------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt 559 (689)
T KOG1000|consen 489 DAPPRKFLVFAHHQIVLDTIQVEVNKR---------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLT 559 (689)
T ss_pred cCCCceEEEEehhHHHHHHHHHHHHHc---------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeeccccee
Confidence 445678999999999999988888874 77788899999999999998888543 3334677778999999
Q ss_pred CCCccEEEcCCC
Q psy1907 188 IDNIIYVIDPGF 199 (1320)
Q Consensus 188 Ip~I~~VID~g~ 199 (1320)
+..-+.||=-.+
T Consensus 560 ~tAa~~VVFaEL 571 (689)
T KOG1000|consen 560 LTAASVVVFAEL 571 (689)
T ss_pred eeccceEEEEEe
Confidence 999999995444
No 414
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.14 E-value=0.24 Score=61.87 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=23.1
Q ss_pred HHHHHHHHhCC---EEEEEcCCCCchhcHHHHHHH
Q psy1907 676 QDLIDAVRDHQ---VLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 676 ~~il~~i~~~~---v~ii~geTGsGKTTqvPq~l~ 707 (1320)
..|..++..+. ..+++|++|+||||.+=.+..
T Consensus 24 ~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~ 58 (504)
T PRK14963 24 EVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAM 58 (504)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34555666664 359999999999999865543
No 415
>CHL00181 cbbX CbbX; Provisional
Probab=92.14 E-value=0.29 Score=56.86 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=24.4
Q ss_pred CCEEEEEcCCCCchhcHHHHH---HHHccCCCCCcEEEEe
Q psy1907 685 HQVLIIEGETGSGKTTQIPQY---LHEAGFTKDKMKIGCT 721 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~---l~e~~~~~~~~~I~~t 721 (1320)
...+++.|+||+||||..-.+ ++..|+...+.-+.++
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~ 98 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT 98 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec
Confidence 345899999999999986544 4455665544323333
No 416
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.11 E-value=0.21 Score=63.71 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=22.6
Q ss_pred HHHHHHHHhCC---EEEEEcCCCCchhcHHHHH
Q psy1907 676 QDLIDAVRDHQ---VLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 676 ~~il~~i~~~~---v~ii~geTGsGKTTqvPq~ 705 (1320)
..|..++++++ ..|+.|++|+||||..=-+
T Consensus 26 ~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~l 58 (620)
T PRK14954 26 HTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVF 58 (620)
T ss_pred HHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHH
Confidence 34666777764 4889999999999876433
No 417
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.09 E-value=0.26 Score=61.67 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCE---EEEEcCCCCchhcHHHHHH
Q psy1907 675 KQDLIDAVRDHQV---LIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 675 ~~~il~~i~~~~v---~ii~geTGsGKTTqvPq~l 706 (1320)
...|..+++++++ .++.|+.|+||||.+=.+.
T Consensus 23 ~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LA 57 (535)
T PRK08451 23 SKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFA 57 (535)
T ss_pred HHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHH
Confidence 3566677777654 4899999999998876544
No 418
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.09 E-value=0.29 Score=65.06 Aligned_cols=81 Identities=26% Similarity=0.437 Sum_probs=47.4
Q ss_pred EEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccCCCCccEEEE
Q psy1907 687 VLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSERTIIKYM 766 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~s~~T~i~y~ 766 (1320)
++++.||||+|||...-. |.+.-+.... .+++.. ++..+-+..++.-.|...| -|||.
T Consensus 598 ~~lf~Gp~GvGKT~lA~~-La~~l~~~~~-~~~~~d---mse~~~~~~~~~l~g~~~g-yvg~~---------------- 655 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALA-LAELLYGGEQ-NLITIN---MSEFQEAHTVSRLKGSPPG-YVGYG---------------- 655 (852)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHhCCCc-ceEEEe---HHHhhhhhhhccccCCCCC-ccccc----------------
Confidence 689999999999976543 3333232222 233332 3333333444444444433 34442
Q ss_pred ccHHHHHHHhcCCCCCCccEEEEcccc
Q psy1907 767 TDGTLHREFLSEPDLASYSVMIIDEAH 793 (1320)
Q Consensus 767 TdG~Llrel~~dp~L~~ys~iIiDE~H 793 (1320)
..|+|...+... .||+|+|||++
T Consensus 656 ~~g~L~~~v~~~----p~svvllDEie 678 (852)
T TIGR03345 656 EGGVLTEAVRRK----PYSVVLLDEVE 678 (852)
T ss_pred ccchHHHHHHhC----CCcEEEEechh
Confidence 357777777664 48999999996
No 419
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.08 E-value=0.23 Score=55.16 Aligned_cols=34 Identities=35% Similarity=0.414 Sum_probs=28.1
Q ss_pred HHHHH-HHHhCCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 676 QDLID-AVRDHQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 676 ~~il~-~i~~~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
|+++. .+..+.++.|.|++||||||..-|++...
T Consensus 9 D~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 9 DELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred HHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 44553 56789999999999999999999988764
No 420
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.98 E-value=0.18 Score=53.42 Aligned_cols=86 Identities=22% Similarity=0.269 Sum_probs=49.3
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHHHHccCCC-CCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccCCCC
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYLHEAGFTK-DKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSER 760 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~-~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~s~~ 760 (1320)
+..++++.|.|+.||||||.+=-.. |... ..+.|.+- -..+...+.+.. ....+||.-.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~---G~~~~~~G~v~~~-g~~~~~~~~~~~--------~~~~i~~~~q-------- 82 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILS---GLYKPDSGEILVD-GKEVSFASPRDA--------RRAGIAMVYQ-------- 82 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEEC-CEECCcCCHHHH--------HhcCeEEEEe--------
Confidence 5688999999999999999997543 3221 22234331 111111111110 1123565322
Q ss_pred ccEEEEccHHHHHHHhcCCCCCCccEEEEccc
Q psy1907 761 TIIKYMTDGTLHREFLSEPDLASYSVMIIDEA 792 (1320)
Q Consensus 761 T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~ 792 (1320)
...|+.-|-.+.--.+.+.+++|+||-
T Consensus 83 -----LS~G~~qrl~laral~~~p~illlDEP 109 (163)
T cd03216 83 -----LSVGERQMVEIARALARNARLLILDEP 109 (163)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 677876655555555566689999997
No 421
>PRK09087 hypothetical protein; Validated
Probab=91.92 E-value=0.28 Score=54.97 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=18.3
Q ss_pred hCCEEEEEcCCCCchhcHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
.++.++|.|++||||||.+=.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~ 64 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIW 64 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 3677999999999999888543
No 422
>PRK12377 putative replication protein; Provisional
Probab=91.91 E-value=0.39 Score=54.54 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=18.9
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
....++|.|++|+|||+..-.+..
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~ 123 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGN 123 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999987654443
No 423
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=91.77 E-value=0.33 Score=61.96 Aligned_cols=129 Identities=24% Similarity=0.287 Sum_probs=84.3
Q ss_pred HhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhC---C
Q psy1907 665 TKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMG---V 741 (1320)
Q Consensus 665 ~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~---~ 741 (1320)
.++.|-+.++--+|+.++.=++--|..=.||+|||.-..-..+-.+..+.+ +.+.=|-.+ +|+|=|++|+ .
T Consensus 71 ~~R~lg~r~ydvQlig~l~Ll~G~VaEM~TGEGKTLvA~l~a~l~AL~G~~--VhvvT~Ndy----LA~RDae~m~~ly~ 144 (764)
T PRK12326 71 AERTLGLRPFDVQLLGALRLLAGDVIEMATGEGKTLAGAIAAAGYALQGRR--VHVITVNDY----LARRDAEWMGPLYE 144 (764)
T ss_pred HHHHcCCCcchHHHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHHHcCCC--eEEEcCCHH----HHHHHHHHHHHHHH
Confidence 466788888999999999888888888899999998764433333333333 555555544 5566666664 4
Q ss_pred CCCCeeeEEeecCccC----CCCccEEEEccHH----HHHH-HhcCC---CCCCccEEEEcccccceEEEcC
Q psy1907 742 KLGCEVGYAIRFEDCT----SERTIIKYMTDGT----LHRE-FLSEP---DLASYSVMIIDEAHPKVYVIDP 801 (1320)
Q Consensus 742 ~lG~~VGY~irfe~~~----s~~T~i~y~TdG~----Llre-l~~dp---~L~~ys~iIiDE~HER~~ViD~ 801 (1320)
.+|-+||+-..-.+.. .-...|+|+|++= .||- |..++ ....+...|||||. .+.||-
T Consensus 145 ~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvD--SiLIDe 214 (764)
T PRK12326 145 ALGLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEAD--SVLVDE 214 (764)
T ss_pred hcCCEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchh--hheecc
Confidence 5788999754422111 1246799999985 2332 32222 45778999999996 556663
No 424
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.68 E-value=0.2 Score=57.50 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=18.7
Q ss_pred HHHHHHHhcC---CCCCCccEEEEcccc
Q psy1907 769 GTLHREFLSE---PDLASYSVMIIDEAH 793 (1320)
Q Consensus 769 G~Llrel~~d---p~L~~ys~iIiDE~H 793 (1320)
-+|+|-|+.- -.-..-++|-|||+.
T Consensus 145 NillkLlqaadydV~rAerGIIyIDEID 172 (408)
T COG1219 145 NILLKLLQAADYDVERAERGIIYIDEID 172 (408)
T ss_pred HHHHHHHHHcccCHHHHhCCeEEEechh
Confidence 4788888752 245678899999984
No 425
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=91.68 E-value=3.3 Score=53.18 Aligned_cols=128 Identities=14% Similarity=0.086 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCC----CC
Q psy1907 96 YIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTP----PN 171 (1320)
Q Consensus 96 ~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~----~g 171 (1320)
|.++....+..+.... .|.+||-+++...++.+++.|...+ .+ .+.++|..+. +..+++.|+ +|
T Consensus 454 ~~~~~~~~~~~~~~~~-~G~~lvLfTS~~~~~~~~~~l~~~l--------~~-~~l~qg~~~~--~~~l~~~f~~~~~~~ 521 (636)
T TIGR03117 454 WLENVSLSTAAILRKA-QGGTLVLTTAFSHISAIGQLVELGI--------PA-EIVIQSEKNR--LASAEQQFLALYANG 521 (636)
T ss_pred HHHHHHHHHHHHHHHc-CCCEEEEechHHHHHHHHHHHHhhc--------CC-CEEEeCCCcc--HHHHHHHHHHhhcCC
Confidence 5556666666665544 6889999999999999999997642 22 3345665532 122333443 35
Q ss_pred CeEEEEeCcccccCCCC----------CCccEEEcCCCCccccccC--------CCCccccceeccCHhhHHHHhhhcCC
Q psy1907 172 ARKVVLATNIAETSLTI----------DNIIYVIDPGFCKQNNFNS--------RTGMESLTVVPISKASANQRAGVITG 233 (1320)
Q Consensus 172 ~~kVlvATdIAe~gldI----------p~I~~VID~g~~k~~~yd~--------~~g~~~l~~~piSk~s~~QR~GRAGR 233 (1320)
...||++|+-+-.|||+ +.+..||=.-+|-.. -|| ..|.......|-..-.+.|-.||.=|
T Consensus 522 ~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~-~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR 600 (636)
T TIGR03117 522 IQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGL-NRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVR 600 (636)
T ss_pred CCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCc-CChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceee
Confidence 78999999999999999 347788754443221 111 11222222334444455666666666
Q ss_pred CCC
Q psy1907 234 FNP 236 (1320)
Q Consensus 234 ~g~ 236 (1320)
...
T Consensus 601 ~~~ 603 (636)
T TIGR03117 601 HPD 603 (636)
T ss_pred cCC
Confidence 543
No 426
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=91.63 E-value=0.15 Score=52.14 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=20.7
Q ss_pred EEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 687 VLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
|++++|++||||||.+=++.-..+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 689999999999999988875554
No 427
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=91.60 E-value=0.6 Score=62.32 Aligned_cols=105 Identities=20% Similarity=0.302 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeee-E-EeecC----ccCC
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVG-Y-AIRFE----DCTS 758 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VG-Y-~irfe----~~~s 758 (1320)
..-++|.=|.|-|||-|.=-++.+.-..+..++|++.-|- |+......||..+.+-.+. | .-++. +..+
T Consensus 169 ~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-----sL~~QW~~El~~kF~l~~~i~~~~~~~~~~~~~~~ 243 (956)
T PRK04914 169 APRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-----TLQHQWLVEMLRRFNLRFSLFDEERYAEAQHDADN 243 (956)
T ss_pred CCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-----HHHHHHHHHHHHHhCCCeEEEcCcchhhhcccccC
Confidence 3467899999999998876555543333333468888893 6667777777555443221 0 00100 0011
Q ss_pred --CCccEEEEccHHHHHH--HhcCCCCCCccEEEEccccc
Q psy1907 759 --ERTIIKYMTDGTLHRE--FLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 759 --~~T~i~y~TdG~Llre--l~~dp~L~~ys~iIiDE~HE 794 (1320)
....++.++.++|-+. ....-.-..+++|||||||.
T Consensus 244 pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~ 283 (956)
T PRK04914 244 PFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHH 283 (956)
T ss_pred ccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhh
Confidence 2456889999988751 11111123799999999994
No 428
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.59 E-value=0.23 Score=52.88 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.0
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
+..++++.|+|+.||||||.+--.
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i 48 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLL 48 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 467899999999999999988655
No 429
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=91.59 E-value=0.28 Score=55.77 Aligned_cols=62 Identities=34% Similarity=0.489 Sum_probs=38.2
Q ss_pred EEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccCCCCccEEEE
Q psy1907 687 VLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSERTIIKYM 766 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~s~~T~i~y~ 766 (1320)
-+++.||+|-||||. |.=+|.|||+++-.+-|=.+-
T Consensus 54 HvLl~GPPGlGKTTL------------------------------A~IIA~Emgvn~k~tsGp~le-------------- 89 (332)
T COG2255 54 HVLLFGPPGLGKTTL------------------------------AHIIANELGVNLKITSGPALE-------------- 89 (332)
T ss_pred eEEeeCCCCCcHHHH------------------------------HHHHHHHhcCCeEeccccccc--------------
Confidence 589999999999964 445778888664221111000
Q ss_pred ccHHHHHHHhcCCCCCCccEEEEcccccc
Q psy1907 767 TDGTLHREFLSEPDLASYSVMIIDEAHPK 795 (1320)
Q Consensus 767 TdG~Llrel~~dp~L~~ys~iIiDE~HER 795 (1320)
-.|=|...| + .|...+|+.|||+|-=
T Consensus 90 K~gDlaaiL-t--~Le~~DVLFIDEIHrl 115 (332)
T COG2255 90 KPGDLAAIL-T--NLEEGDVLFIDEIHRL 115 (332)
T ss_pred ChhhHHHHH-h--cCCcCCeEEEehhhhc
Confidence 011122222 1 4889999999999943
No 430
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.51 E-value=0.46 Score=60.26 Aligned_cols=30 Identities=23% Similarity=0.504 Sum_probs=21.4
Q ss_pred HHHHHHHhC---CEEEEEcCCCCchhcHHHHHH
Q psy1907 677 DLIDAVRDH---QVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 677 ~il~~i~~~---~v~ii~geTGsGKTTqvPq~l 706 (1320)
.|.+++.++ +..+++|+.|+||||..=.+.
T Consensus 27 ~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 27 TLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 445555543 468899999999998775543
No 431
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=91.50 E-value=0.14 Score=62.42 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=15.7
Q ss_pred CEEEEEcCCCCchhcHHH
Q psy1907 686 QVLIIEGETGSGKTTQIP 703 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvP 703 (1320)
+.++|.|++|+|||+.+-
T Consensus 137 n~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 568999999999998873
No 432
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=91.48 E-value=0.3 Score=58.82 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=28.2
Q ss_pred HHHHH-HHHhCCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 676 QDLID-AVRDHQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 676 ~~il~-~i~~~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
|++|. .+....+++|.|++|+||||.+-|+..+..
T Consensus 72 D~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a 107 (372)
T cd01121 72 DRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA 107 (372)
T ss_pred HHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34443 467789999999999999999999987643
No 433
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.42 E-value=0.073 Score=58.67 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=19.0
Q ss_pred hCCEEEEEcCCCCchhcHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
++++++|+|+.||||||.+-+.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i 49 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQI 49 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 5689999999999999987654
No 434
>KOG0339|consensus
Probab=91.38 E-value=0.58 Score=56.51 Aligned_cols=116 Identities=24% Similarity=0.271 Sum_probs=62.3
Q ss_pred HHHHHHHhCCEEEEEcCCCCchhcHH--HHHHH--H-ccCC-CCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeee--
Q psy1907 677 DLIDAVRDHQVLIIEGETGSGKTTQI--PQYLH--E-AGFT-KDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVG-- 748 (1320)
Q Consensus 677 ~il~~i~~~~v~ii~geTGsGKTTqv--Pq~l~--e-~~~~-~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VG-- 748 (1320)
+++......+-+|=++-||||||--+ |-..+ + ..+. ..|---++.-|-|--|..|-. +|+-+|--.|-.|-
T Consensus 252 qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~-eaKkf~K~ygl~~v~~ 330 (731)
T KOG0339|consen 252 QALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFS-EAKKFGKAYGLRVVAV 330 (731)
T ss_pred cccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHH-HHHHhhhhccceEEEe
Confidence 33444455666777889999999765 43332 1 1122 122222334555544433211 22222222221110
Q ss_pred EEee--cCcc--CCCCccEEEEccHHHHHHHhc-CCCCCCccEEEEcccc
Q psy1907 749 YAIR--FEDC--TSERTIIKYMTDGTLHREFLS-EPDLASYSVMIIDEAH 793 (1320)
Q Consensus 749 Y~ir--fe~~--~s~~T~i~y~TdG~Llrel~~-dp~L~~ys~iIiDE~H 793 (1320)
|+=. .|.. --...-|++||.|-|+-.+.- --+|.++|.+||||+.
T Consensus 331 ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad 380 (731)
T KOG0339|consen 331 YGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD 380 (731)
T ss_pred ecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechh
Confidence 1100 0000 113567999999999988744 4589999999999997
No 435
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=91.36 E-value=0.17 Score=62.65 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=17.1
Q ss_pred CEEEEEcCCCCchhcHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l 706 (1320)
+.++|.|++|+|||+.+--+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~ 169 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIG 169 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 568999999999998875443
No 436
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.31 E-value=0.31 Score=51.52 Aligned_cols=51 Identities=35% Similarity=0.359 Sum_probs=33.5
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHHHHccCCC-CCcEEEE---ecccHHHHHHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYLHEAGFTK-DKMKIGC---TQPRRVAAMSVSAR 734 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~-~~~~I~~---tQPRRvAA~svA~r 734 (1320)
+.-..|+.|+||.||||||.+--+ ..-... .|...+- -|||.+..+|=|+|
T Consensus 29 l~PGeVLgiVGESGSGKtTLL~~i--s~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 29 LYPGEVLGIVGESGSGKTTLLKCI--SGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred ecCCcEEEEEecCCCcHHhHHHHH--hcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 345789999999999999998532 111221 2211122 37888888888877
No 437
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=91.23 E-value=0.55 Score=54.10 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=23.4
Q ss_pred HHHHHHHHHh-C--CEEEEEcCCCCchhcHHHHHH
Q psy1907 675 KQDLIDAVRD-H--QVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 675 ~~~il~~i~~-~--~v~ii~geTGsGKTTqvPq~l 706 (1320)
.+.++..+.+ . +.++|.|+|||||||.+--..
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~ 132 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLA 132 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHh
Confidence 3444544443 3 588999999999999997664
No 438
>KOG2373|consensus
Probab=91.14 E-value=0.11 Score=60.00 Aligned_cols=35 Identities=29% Similarity=0.490 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
-..+|...+....+|++|+|||||||-+--|-++.
T Consensus 263 LNk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL 297 (514)
T KOG2373|consen 263 LNKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDL 297 (514)
T ss_pred HHHHhccCCCCceEEEecCCCCCceeEehHhhHHH
Confidence 46788888899999999999999999999997774
No 439
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.10 E-value=0.11 Score=56.87 Aligned_cols=23 Identities=39% Similarity=0.614 Sum_probs=20.6
Q ss_pred HHhCCEEEEEcCCCCchhcHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq 704 (1320)
|....|++|+||.||||||.+--
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRc 47 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRC 47 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 56889999999999999999853
No 440
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=91.09 E-value=0.11 Score=57.81 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.4
Q ss_pred HHhCCEEEEEcCCCCchhcHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq 704 (1320)
|+.+.++.|+||+||||||.+--
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLni 50 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNL 50 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 56889999999999999999853
No 441
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=91.07 E-value=0.39 Score=62.37 Aligned_cols=133 Identities=22% Similarity=0.251 Sum_probs=85.4
Q ss_pred HhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCC
Q psy1907 665 TKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLG 744 (1320)
Q Consensus 665 ~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG 744 (1320)
.++.|-+.++--+|+.++.=|+--|..=.||+|||.-.....+-.+..+.+ +.+.-|-.+-|..=|+.+..-+ ..+|
T Consensus 73 ~~R~~g~~~~dvQlig~l~l~~G~iaEm~TGEGKTLvA~l~a~l~al~G~~--v~vvT~neyLA~Rd~e~~~~~~-~~LG 149 (796)
T PRK12906 73 AKRVLGLRPFDVQIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKG--VHVVTVNEYLSSRDATEMGELY-RWLG 149 (796)
T ss_pred HHHHhCCCCchhHHHHHHHHhcCCcccccCCCCCcHHHHHHHHHHHHcCCC--eEEEeccHHHHHhhHHHHHHHH-HhcC
Confidence 466788888899999999888888999999999998865444333333333 5555666665554444443322 3578
Q ss_pred CeeeEEeecCcc----CCCCccEEEEccHHHHHHHhcCC--------CCCCccEEEEcccccceEEEcCC
Q psy1907 745 CEVGYAIRFEDC----TSERTIIKYMTDGTLHREFLSEP--------DLASYSVMIIDEAHPKVYVIDPG 802 (1320)
Q Consensus 745 ~~VGY~irfe~~----~s~~T~i~y~TdG~Llrel~~dp--------~L~~ys~iIiDE~HER~~ViD~G 802 (1320)
-+||+-..-.+. ..-...|+|+|..=|---.+.|. ....+...|||||. .+.||-.
T Consensus 150 l~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvD--SiLiDea 217 (796)
T PRK12906 150 LTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVD--SILIDEA 217 (796)
T ss_pred CeEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccch--heeeccC
Confidence 888876542111 11246799999985432222222 34578899999996 4555544
No 442
>PRK13342 recombination factor protein RarA; Reviewed
Probab=91.05 E-value=0.36 Score=59.06 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=20.9
Q ss_pred HHHHHHhCC--EEEEEcCCCCchhcHHHHHH
Q psy1907 678 LIDAVRDHQ--VLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 678 il~~i~~~~--v~ii~geTGsGKTTqvPq~l 706 (1320)
|..++.++. .++|.|++|+||||.+=.+.
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia 57 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLARIIA 57 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHHHHH
Confidence 444454443 68899999999998876553
No 443
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=91.03 E-value=0.37 Score=61.09 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=24.5
Q ss_pred HHHHHHHHhCC---EEEEEcCCCCchhcHHHHHHHH
Q psy1907 676 QDLIDAVRDHQ---VLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 676 ~~il~~i~~~~---v~ii~geTGsGKTTqvPq~l~e 708 (1320)
..|..++++++ ..++.||.|+||||.+=.+.-.
T Consensus 26 ~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 26 ETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45667777664 4689999999999987655443
No 444
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=91.02 E-value=0.2 Score=61.76 Aligned_cols=20 Identities=40% Similarity=0.557 Sum_probs=16.5
Q ss_pred CEEEEEcCCCCchhcHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l 706 (1320)
+.++|.|++|+|||+.+ +.+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai 161 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAA 161 (450)
T ss_pred CceEEECCCCCcHHHHH-HHH
Confidence 45899999999999887 443
No 445
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=90.99 E-value=0.32 Score=60.74 Aligned_cols=31 Identities=26% Similarity=0.526 Sum_probs=27.7
Q ss_pred HHHHhCCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 680 DAVRDHQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 680 ~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
-.+-.+.+++|.|+||+||||..-||+++..
T Consensus 258 GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~ 288 (484)
T TIGR02655 258 GGFFKDSIILATGATGTGKTLLVSKFLENAC 288 (484)
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3477899999999999999999999998764
No 446
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=90.88 E-value=0.2 Score=58.51 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.1
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
....+++|+|++||||||.+-.+...
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999998876543
No 447
>PRK13695 putative NTPase; Provisional
Probab=90.85 E-value=0.39 Score=51.25 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=17.1
Q ss_pred EEEEcCCCCchhcHHHHHHH
Q psy1907 688 LIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 688 ~ii~geTGsGKTTqvPq~l~ 707 (1320)
++|+|++||||||.+=.++.
T Consensus 3 i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999986543
No 448
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=90.76 E-value=0.19 Score=55.97 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=15.2
Q ss_pred CEEEEEcCCCCchhcHHH
Q psy1907 686 QVLIIEGETGSGKTTQIP 703 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvP 703 (1320)
+.+.|.|++|+|||..+-
T Consensus 35 ~~l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred CceEEECCCCCCHHHHHH
Confidence 468999999999997653
No 449
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=90.75 E-value=0.3 Score=57.21 Aligned_cols=45 Identities=27% Similarity=0.190 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecc
Q psy1907 676 QDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQP 723 (1320)
Q Consensus 676 ~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQP 723 (1320)
+-|..++.....++|+|.|||||||.+=-++.+-... -+|+|.+-
T Consensus 164 ~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~---eRvItiED 208 (355)
T COG4962 164 KFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSD---ERVITIED 208 (355)
T ss_pred HHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCc---ccEEEEee
Confidence 3455566677799999999999999998776543332 26888764
No 450
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=90.69 E-value=0.27 Score=59.37 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=22.4
Q ss_pred HHHHHHHhCCEEEEEcCCCCchhcHHH
Q psy1907 677 DLIDAVRDHQVLIIEGETGSGKTTQIP 703 (1320)
Q Consensus 677 ~il~~i~~~~v~ii~geTGsGKTTqvP 703 (1320)
.++..+++|..+|+.||+|+|||...-
T Consensus 201 rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 201 RLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred hhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 345678999999999999999996543
No 451
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=90.61 E-value=0.21 Score=56.27 Aligned_cols=40 Identities=20% Similarity=0.358 Sum_probs=30.8
Q ss_pred HHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEe
Q psy1907 681 AVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCT 721 (1320)
Q Consensus 681 ~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~t 721 (1320)
.+..+.+++|.|++||||||..=||+++.. ..+..-+++|
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs 56 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVA 56 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEE
Confidence 566899999999999999999999998864 2222235554
No 452
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.61 E-value=0.31 Score=58.14 Aligned_cols=31 Identities=26% Similarity=0.512 Sum_probs=23.6
Q ss_pred HHHHHHH-hCCEEEEEcCCCCchhcHHHHHHH
Q psy1907 677 DLIDAVR-DHQVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 677 ~il~~i~-~~~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
.+.+.+. ...+++|+|+|||||||.+-.++.
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~al~~ 144 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLASMID 144 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHHHHHH
Confidence 4555553 467999999999999999965543
No 453
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=90.59 E-value=0.24 Score=53.35 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=27.7
Q ss_pred CEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEeccc
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPR 724 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPR 724 (1320)
++.+|.|+=+|||||.+=+-+....+ .|+++++..|.
T Consensus 2 ~l~~i~GpM~sGKS~eLi~~~~~~~~--~~~~v~~~kp~ 38 (176)
T PF00265_consen 2 KLEFITGPMFSGKSTELIRRIHRYEI--AGKKVLVFKPA 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH--TT-EEEEEEES
T ss_pred EEEEEECCcCChhHHHHHHHHHHHHh--CCCeEEEEEec
Confidence 46789999999999999887755433 34578888774
No 454
>PRK14738 gmk guanylate kinase; Provisional
Probab=90.55 E-value=0.2 Score=55.29 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=20.5
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
...++||+|+.||||||.+=+. .+.+
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L-~~~~ 37 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARM-RERK 37 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHH-HhcC
Confidence 5678999999999999988554 4443
No 455
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=90.55 E-value=0.21 Score=49.49 Aligned_cols=18 Identities=50% Similarity=0.776 Sum_probs=15.3
Q ss_pred EEEEEcCCCCchhcHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq 704 (1320)
|++|+|++||||||..=+
T Consensus 1 vI~I~G~~gsGKST~a~~ 18 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKE 18 (121)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 689999999999986643
No 456
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=90.44 E-value=0.24 Score=52.53 Aligned_cols=32 Identities=25% Similarity=0.531 Sum_probs=26.1
Q ss_pred HHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 676 QDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 676 ~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
++|.+.+++ ++++++|++|+||||.|=..+-+
T Consensus 27 ~~l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 27 EELKELLKG-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHHHTT-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHHhcC-CEEEEECCCCCCHHHHHHHHHhh
Confidence 456666666 99999999999999999776643
No 457
>KOG0336|consensus
Probab=90.43 E-value=1 Score=53.15 Aligned_cols=112 Identities=24% Similarity=0.274 Sum_probs=70.6
Q ss_pred HHhCCEEEEEcCCCCchhcH--HHHHHHHccCC-----CCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEE--ee
Q psy1907 682 VRDHQVLIIEGETGSGKTTQ--IPQYLHEAGFT-----KDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYA--IR 752 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTq--vPq~l~e~~~~-----~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~--ir 752 (1320)
+...+=+|-++-||+|||-- +|-+++-..-. .++-.+++.-|+|=.|..+---+..+.--.+-...=|+ -|
T Consensus 254 ~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR 333 (629)
T KOG0336|consen 254 LLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNR 333 (629)
T ss_pred eecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCc
Confidence 35667789999999999953 45554422111 12335788888888776665555554321111111122 22
Q ss_pred cCcc--CCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEcccc
Q psy1907 753 FEDC--TSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAH 793 (1320)
Q Consensus 753 fe~~--~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~H 793 (1320)
-+.. ....--|+.+|.|-|..-.+++- +|++++.+|||||.
T Consensus 334 ~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEAD 377 (629)
T KOG0336|consen 334 NEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEAD 377 (629)
T ss_pred hhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh
Confidence 2211 13356799999999887776665 89999999999998
No 458
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=90.34 E-value=0.24 Score=60.05 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=18.0
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
...++|.||+|||||+.+=.+..+
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHH
Confidence 456899999999999876544333
No 459
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=90.30 E-value=0.33 Score=59.82 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=17.0
Q ss_pred CEEEEEcCCCCchhcHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l 706 (1320)
+.++|.|++|+|||+.+=.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~ 162 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAV 162 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHH
Confidence 468899999999998875444
No 460
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.27 E-value=0.48 Score=60.71 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=23.0
Q ss_pred HHHHHHHHhCC---EEEEEcCCCCchhcHHHHHHH
Q psy1907 676 QDLIDAVRDHQ---VLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 676 ~~il~~i~~~~---v~ii~geTGsGKTTqvPq~l~ 707 (1320)
..|..++..++ .+++.|+.|+||||.+=-+.-
T Consensus 26 ~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk 60 (620)
T PRK14948 26 TTLKNALISNRIAPAYLFTGPRGTGKTSSARILAK 60 (620)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHH
Confidence 34556666654 569999999999988765543
No 461
>KOG1805|consensus
Probab=90.25 E-value=0.48 Score=61.32 Aligned_cols=62 Identities=23% Similarity=0.213 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHH
Q psy1907 673 PFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVA 736 (1320)
Q Consensus 673 ~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva 736 (1320)
.+|++++.++......+|.|=||+||||.|-..+---- ..|++|+.|-=--.|.=.+-.++.
T Consensus 673 dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~--~~gkkVLLtsyThsAVDNILiKL~ 734 (1100)
T KOG1805|consen 673 DQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILV--ALGKKVLLTSYTHSAVDNILIKLK 734 (1100)
T ss_pred HHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHH--HcCCeEEEEehhhHHHHHHHHHHh
Confidence 46789999999999999999999999999865532111 124578888776666655555544
No 462
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=90.17 E-value=0.18 Score=57.70 Aligned_cols=47 Identities=28% Similarity=0.496 Sum_probs=35.7
Q ss_pred HHhccCCC------hhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 664 ETKKSLPI------YPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 664 ~~r~~LPi------~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
+.|+.||- ++--++++..+..+.+++|.|+||+||||.+-|++....
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~ 55 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLI 55 (271)
T ss_pred hhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34666662 222355667789999999999999999999999987643
No 463
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.15 E-value=0.73 Score=59.06 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCC---EEEEEcCCCCchhcHHHHHH
Q psy1907 675 KQDLIDAVRDHQ---VLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 675 ~~~il~~i~~~~---v~ii~geTGsGKTTqvPq~l 706 (1320)
...|..++++++ ..++.|+.|+|||| +-..+
T Consensus 26 ~~~L~~~i~~~~l~hayLf~Gp~G~GKtt-~A~~l 59 (614)
T PRK14971 26 TTTLKNAIATNKLAHAYLFCGPRGVGKTT-CARIF 59 (614)
T ss_pred HHHHHHHHHcCCCCeeEEEECCCCCCHHH-HHHHH
Confidence 446777787764 58999999999999 44443
No 464
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=90.08 E-value=0.47 Score=58.65 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=23.2
Q ss_pred HHHHHHHHhCC---EEEEEcCCCCchhcHHHHHH
Q psy1907 676 QDLIDAVRDHQ---VLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 676 ~~il~~i~~~~---v~ii~geTGsGKTTqvPq~l 706 (1320)
..|.++++.++ ..++.|++|+||||.+=-+.
T Consensus 27 ~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lA 60 (451)
T PRK06305 27 AVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFA 60 (451)
T ss_pred HHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHH
Confidence 45666676654 58899999999998875543
No 465
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=90.05 E-value=0.13 Score=52.15 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=20.4
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..+++++|+|+.||||||.+-..
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l 31 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKAL 31 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred EcCCCEEEEEccCCCccccceeee
Confidence 346789999999999999999643
No 466
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=90.03 E-value=0.15 Score=60.05 Aligned_cols=24 Identities=25% Similarity=0.559 Sum_probs=20.9
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|+++.+++|.||+||||||.+--+
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~I 49 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMI 49 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 567889999999999999998643
No 467
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=90.01 E-value=0.33 Score=54.21 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=28.4
Q ss_pred HHHHH-HHHhCCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 676 QDLID-AVRDHQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 676 ~~il~-~i~~~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
|+++. .+..+.++.|+|++||||||..-|+++..
T Consensus 9 D~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 9 DELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred HhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHe
Confidence 44554 57789999999999999999999998764
No 468
>PRK08939 primosomal protein DnaI; Reviewed
Probab=89.97 E-value=0.68 Score=54.32 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=19.1
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
..+.++|.|++|+|||..+--...+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~ 179 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANE 179 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999776544433
No 469
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=89.92 E-value=0.65 Score=55.94 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.1
Q ss_pred HHHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 681 AVRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 681 ~i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
-|..+|.+.|+|++||||||.+-..
T Consensus 164 pig~Gq~~~IvG~~g~GKTtL~~~i 188 (415)
T TIGR00767 164 PIGKGQRGLIVAPPKAGKTVLLQKI 188 (415)
T ss_pred EeCCCCEEEEECCCCCChhHHHHHH
Confidence 3568999999999999999976553
No 470
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.91 E-value=0.32 Score=54.58 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=23.4
Q ss_pred HHHhCCEEEEEcCCCCchhcHHHHHHH
Q psy1907 681 AVRDHQVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 681 ~i~~~~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
++.+...+||+|+|||||||-+--.+-
T Consensus 123 a~~kRGLviiVGaTGSGKSTtmAaMi~ 149 (375)
T COG5008 123 ALAKRGLVIIVGATGSGKSTTMAAMIG 149 (375)
T ss_pred hcccCceEEEECCCCCCchhhHHHHhc
Confidence 457888999999999999999987763
No 471
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.89 E-value=0.17 Score=55.38 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=20.9
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|.+|+|+.+.||.||||||.+--+
T Consensus 30 i~~~~VTAlIGPSGcGKST~LR~l 53 (253)
T COG1117 30 IPKNKVTALIGPSGCGKSTLLRCL 53 (253)
T ss_pred ccCCceEEEECCCCcCHHHHHHHH
Confidence 468999999999999999988543
No 472
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=89.86 E-value=0.57 Score=56.87 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=17.9
Q ss_pred HHHHHhcCCCCCCccEEEEcccc
Q psy1907 771 LHREFLSEPDLASYSVMIIDEAH 793 (1320)
Q Consensus 771 Llrel~~dp~L~~ys~iIiDE~H 793 (1320)
+.+.+...|...++.|+||||+|
T Consensus 105 l~~~~~~~p~~~~~kViiIDead 127 (394)
T PRK07940 105 LVTIAARRPSTGRWRIVVIEDAD 127 (394)
T ss_pred HHHHHHhCcccCCcEEEEEechh
Confidence 44455557778899999999997
No 473
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=89.83 E-value=0.95 Score=60.46 Aligned_cols=88 Identities=16% Similarity=0.242 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHH-----hCCEEEEEcCCCCchhcHHHHHHHHccCCC-----CCcEEEEecccHHHHH-----HHHHH
Q psy1907 670 PIYPFKQDLIDAVR-----DHQVLIIEGETGSGKTTQIPQYLHEAGFTK-----DKMKIGCTQPRRVAAM-----SVSAR 734 (1320)
Q Consensus 670 Pi~~~~~~il~~i~-----~~~v~ii~geTGsGKTTqvPq~l~e~~~~~-----~~~~I~~tQPRRvAA~-----svA~r 734 (1320)
||....++|-..+. ..+..|++||+|+|||+.+--+.....-.. .+..++..+.-.+.|- ...+|
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~ 253 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEER 253 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHH
Q ss_pred HHHHhCCCCCCeeeEEeecCccCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEcccc
Q psy1907 735 VAEEMGVKLGCEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAH 793 (1320)
Q Consensus 735 va~e~~~~lG~~VGY~irfe~~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~H 793 (1320)
+-. ++.++...+ +-.+|+|||+|
T Consensus 254 l~~---------------------------------~l~~~~~~~---~~~ILfIDEih 276 (852)
T TIGR03346 254 LKA---------------------------------VLNEVTKSE---GQIILFIDELH 276 (852)
T ss_pred HHH---------------------------------HHHHHHhcC---CCeEEEeccHH
No 474
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=89.76 E-value=0.38 Score=50.55 Aligned_cols=17 Identities=53% Similarity=0.669 Sum_probs=14.2
Q ss_pred EEEEEcCCCCchhcHHH
Q psy1907 687 VLIIEGETGSGKTTQIP 703 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvP 703 (1320)
++.|.|++||||||.--
T Consensus 2 ~ItIsG~pGsG~TTva~ 18 (179)
T COG1102 2 VITISGLPGSGKTTVAR 18 (179)
T ss_pred EEEeccCCCCChhHHHH
Confidence 57899999999998543
No 475
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.73 E-value=0.17 Score=56.81 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.6
Q ss_pred HHhCCEEEEEcCCCCchhcHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq 704 (1320)
|..+.++-|+|+.||||||.+--
T Consensus 26 v~~GEfvsilGpSGcGKSTLLri 48 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRL 48 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 56899999999999999999854
No 476
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=89.63 E-value=0.25 Score=52.74 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=18.6
Q ss_pred CCEEEEEcCCCCchhcHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l 706 (1320)
+++++|+|++||||||++-...
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~ 22 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALL 22 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999876554
No 477
>PRK10865 protein disaggregation chaperone; Provisional
Probab=89.62 E-value=1 Score=60.18 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=25.9
Q ss_pred CChhhHHHHHHHHH-----hCCEEEEEcCCCCchhcHHHHH
Q psy1907 670 PIYPFKQDLIDAVR-----DHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 670 Pi~~~~~~il~~i~-----~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
||.....+|-..+. ....+|++||+|+||||.+--+
T Consensus 179 ~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~l 219 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGL 219 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHH
Confidence 66666666655552 4457889999999999887543
No 478
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=89.59 E-value=0.25 Score=52.57 Aligned_cols=25 Identities=36% Similarity=0.614 Sum_probs=15.8
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
.+.++++|+|++||||||.+=.++.
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4668999999999999999876654
No 479
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=89.57 E-value=0.17 Score=54.37 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=20.6
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
+..++++.|+|+.||||||.+=-.
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i 45 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTL 45 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999987644
No 480
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=89.51 E-value=1.3 Score=61.64 Aligned_cols=140 Identities=12% Similarity=0.146 Sum_probs=68.4
Q ss_pred CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH----HHHHhhc-CCCCEEEeCCc-ccceeEEEE
Q psy1907 16 LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA----QKFSEFF-DDAPVFRIPGR-RFPVDIYYT 89 (1320)
Q Consensus 16 Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~----~~f~~~f-~~~~vi~i~g~-~~pV~~~y~ 89 (1320)
+..=+++|||||- .+...-+..+++.... .+-|+|++ =|-.- .-|..+- .|.+.....+. ..+.++...
T Consensus 366 ~~~~~ilIVDEA~--~Ls~rdm~~Ll~~A~~--~garVllg-D~~Q~~aAG~af~~Lq~aG~~t~~~~~~~~~~a~iirq 440 (1623)
T PRK14712 366 FTPGSTVIVDQGE--KLSLKETLTLLDGAAR--HNVQVLIT-DSGQRTGTGSALMAMKDAGVNTYRWQGGEQRPATIISE 440 (1623)
T ss_pred CCCCcEEEEECCC--cCCHHHHHHHHHHHHh--cCCEEEEE-echhhhhcccHHHHHHHcCCcEEEEccccccccceeec
Confidence 4445899999994 4555556666665543 44675544 33311 1121111 23444443321 222333222
Q ss_pred cCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcC-CCCCeEEEEec-CCCCHHHHHH
Q psy1907 90 KAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGS-KIKELIILPVY-SNLPTDMQTK 163 (1320)
Q Consensus 90 ~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~-~~~~~~v~~LH-~~l~~~~r~~ 163 (1320)
+....-|.. +........ ......++|+.+++ +-..+...+++.+..-+. +.++..+..|- -.|+..+|..
T Consensus 441 ~d~~ar~~a-la~~y~~~~-~~~~~~~~vv~~~r-er~~lN~~IR~~Lk~~G~L~~~~~~i~tL~pv~lT~a~r~~ 513 (1623)
T PRK14712 441 PDRNVRYAR-LAGDFAASV-KAGEESVAQVSGVR-EQAILTQAIRSELKTQGVLGHPEVTMTALSPVWLDSRSRYL 513 (1623)
T ss_pred CCHHHHHHH-HHHHHHhhc-ccCCceEEEEcCcc-HHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHhhh
Confidence 211111111 111111111 12345688999888 558888888887754332 12345555553 4688886544
No 481
>PRK00300 gmk guanylate kinase; Provisional
Probab=89.49 E-value=0.24 Score=54.09 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=20.9
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
..+.+++|+|++||||||.+-..+-
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~ 27 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLE 27 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999998876653
No 482
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=89.44 E-value=2 Score=55.32 Aligned_cols=112 Identities=16% Similarity=0.200 Sum_probs=68.8
Q ss_pred HHHHHHHhC-CEEEEEcCCCCchhcHHHHHHH---HccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEee
Q psy1907 677 DLIDAVRDH-QVLIIEGETGSGKTTQIPQYLH---EAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIR 752 (1320)
Q Consensus 677 ~il~~i~~~-~v~ii~geTGsGKTTqvPq~l~---e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~ir 752 (1320)
.+.+++.++ +=++|+-.||+|||--.-+++. ..|+. ++|+-.--|+.-.-....-... -.+-|..+ ..-
T Consensus 176 rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~---KRVLFLaDR~~Lv~QA~~af~~--~~P~~~~~--n~i 248 (875)
T COG4096 176 RVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWV---KRVLFLADRNALVDQAYGAFED--FLPFGTKM--NKI 248 (875)
T ss_pred HHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchh---heeeEEechHHHHHHHHHHHHH--hCCCccce--eee
Confidence 467777654 3477788899999976666643 44443 4788887777665444333222 12222222 112
Q ss_pred cCccCCCCccEEEEccHHHHHHHhcC-C-----CCCCccEEEEcccccc
Q psy1907 753 FEDCTSERTIIKYMTDGTLHREFLSE-P-----DLASYSVMIIDEAHPK 795 (1320)
Q Consensus 753 fe~~~s~~T~i~y~TdG~Llrel~~d-p-----~L~~ys~iIiDE~HER 795 (1320)
.+......++|-+.|.--+.-.+... . .-..|++|||||||--
T Consensus 249 ~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg 297 (875)
T COG4096 249 EDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG 297 (875)
T ss_pred ecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh
Confidence 23333446799999988777666543 1 2345899999999954
No 483
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=89.42 E-value=0.72 Score=54.91 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=18.3
Q ss_pred hCCEEEEEcCCCCchhcHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
.+++++|+||+||||||.+-..
T Consensus 77 ~r~il~L~GPPGsGKStla~~L 98 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECL 98 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3689999999999999776443
No 484
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=89.36 E-value=0.42 Score=58.95 Aligned_cols=18 Identities=39% Similarity=0.529 Sum_probs=15.6
Q ss_pred CEEEEEcCCCCchhcHHH
Q psy1907 686 QVLIIEGETGSGKTTQIP 703 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvP 703 (1320)
+-++|.|++|||||+.+=
T Consensus 131 n~l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CeEEEEcCCCCcHHHHHH
Confidence 459999999999998774
No 485
>KOG1970|consensus
Probab=89.17 E-value=0.4 Score=58.81 Aligned_cols=28 Identities=29% Similarity=0.663 Sum_probs=22.8
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHHccC
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHEAGF 711 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e~~~ 711 (1320)
.++|++|+||+||||||-|--.--|.||
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~ 136 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGY 136 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCc
Confidence 5789999999999999998665555554
No 486
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.16 E-value=0.51 Score=62.04 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=18.9
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
...-+++.|++|||||+..-.+-.+.
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~ 511 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATES 511 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc
Confidence 34568899999999997765544443
No 487
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=89.15 E-value=0.54 Score=49.73 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
.+++|+|+.||||||.+=+..+-.+
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~ 46 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALG 46 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5999999999999999987654433
No 488
>PRK05973 replicative DNA helicase; Provisional
Probab=89.13 E-value=0.32 Score=54.84 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=31.9
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
.+++...+..+++++|.|+||+||||..=||+.+..
T Consensus 54 ~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a 89 (237)
T PRK05973 54 AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAM 89 (237)
T ss_pred HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 456777889999999999999999999999998764
No 489
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=89.09 E-value=0.29 Score=52.48 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=13.3
Q ss_pred EEEEEcCCCCchhcH
Q psy1907 687 VLIIEGETGSGKTTQ 701 (1320)
Q Consensus 687 v~ii~geTGsGKTTq 701 (1320)
++++.||||+|||..
T Consensus 5 ~~ll~GpsGvGKT~l 19 (171)
T PF07724_consen 5 NFLLAGPSGVGKTEL 19 (171)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999954
No 490
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=88.94 E-value=0.29 Score=54.47 Aligned_cols=31 Identities=35% Similarity=0.495 Sum_probs=26.9
Q ss_pred HHHHhCCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 680 DAVRDHQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 680 ~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
-.+-.+.+++|.|++|||||+..=||+++..
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~ 44 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGL 44 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhh
Confidence 3456789999999999999999999998753
No 491
>CHL00095 clpC Clp protease ATP binding subunit
Probab=88.93 E-value=0.8 Score=60.94 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=14.4
Q ss_pred EEEEEcCCCCchhcHHH
Q psy1907 687 VLIIEGETGSGKTTQIP 703 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvP 703 (1320)
++++.||||+|||+..-
T Consensus 541 ~~lf~Gp~GvGKt~lA~ 557 (821)
T CHL00095 541 SFLFSGPTGVGKTELTK 557 (821)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 57899999999997654
No 492
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=88.91 E-value=0.34 Score=55.26 Aligned_cols=35 Identities=29% Similarity=0.530 Sum_probs=29.4
Q ss_pred HHHHH-HHHhCCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 676 QDLID-AVRDHQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 676 ~~il~-~i~~~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
++++. .+..+.+++|+|++|||||+..=||+++..
T Consensus 13 D~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~ 48 (260)
T COG0467 13 DEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGA 48 (260)
T ss_pred HHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 44554 477899999999999999999999998754
No 493
>PRK05642 DNA replication initiation factor; Validated
Probab=88.85 E-value=0.46 Score=53.49 Aligned_cols=19 Identities=16% Similarity=0.480 Sum_probs=15.8
Q ss_pred CEEEEEcCCCCchhcHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq 704 (1320)
..++|.|++|||||..+--
T Consensus 46 ~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5789999999999977543
No 494
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=88.84 E-value=0.87 Score=55.44 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhCC-EEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 673 PFKQDLIDAVRDHQ-VLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 673 ~~~~~il~~i~~~~-v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
.+.+++++.+.... +++|.|+=+|||||.+ ++|...+
T Consensus 24 ~~~~~l~~~~~~~~~i~~i~GpR~~GKTtll-~~l~~~~ 61 (398)
T COG1373 24 KLLPRLIKKLDLRPFIILILGPRQVGKTTLL-KLLIKGL 61 (398)
T ss_pred hhhHHHHhhcccCCcEEEEECCccccHHHHH-HHHHhhC
Confidence 45567778887777 9999999999999999 7766543
No 495
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=88.81 E-value=0.35 Score=51.83 Aligned_cols=27 Identities=37% Similarity=0.640 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHccC
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAGF 711 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~~ 711 (1320)
-.+++|+|++||||||+.=...-+.|+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~ 29 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGF 29 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999998766544443
No 496
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=88.79 E-value=0.66 Score=48.50 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchhcHHHHHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~e 708 (1320)
++.++|..||||||.+-.+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4688999999999998776543
No 497
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=88.78 E-value=0.55 Score=48.25 Aligned_cols=36 Identities=25% Similarity=0.467 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
-..|.+.+..+.+++|.|+.||||||.+-.++-..|
T Consensus 12 ~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 12 GKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 345667778899999999999999999865554433
No 498
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=88.73 E-value=0.52 Score=56.02 Aligned_cols=26 Identities=31% Similarity=0.380 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
-..++|.||+|||||.+.-...-+.|
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg 173 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMG 173 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcC
Confidence 35789999999999977655544443
No 499
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=88.71 E-value=0.68 Score=53.16 Aligned_cols=68 Identities=21% Similarity=0.214 Sum_probs=46.6
Q ss_pred HHHHHHHHHh----CCEEEEEcCCCCchhcHHHHHHHHccCCCC-CcEEEEecccHHHHHHHHHHHHHHhCCC
Q psy1907 675 KQDLIDAVRD----HQVLIIEGETGSGKTTQIPQYLHEAGFTKD-KMKIGCTQPRRVAAMSVSARVAEEMGVK 742 (1320)
Q Consensus 675 ~~~il~~i~~----~~v~ii~geTGsGKTTqvPq~l~e~~~~~~-~~~I~~tQPRRvAA~svA~rva~e~~~~ 742 (1320)
.++|.+.+.+ .+++.|+|..|+||||.+-++..+...... +..+++.-.+......+...++..++..
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 3566666665 789999999999999999998866221111 2346665555544467777888888765
No 500
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=88.71 E-value=0.45 Score=54.54 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 672 YPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 672 ~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
-..++.++.++..+..++|.|++||||||.+-.+-
T Consensus 8 ~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la 42 (262)
T TIGR02640 8 KRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVA 42 (262)
T ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHH
Confidence 34567889999999999999999999999886543
Done!