Query psy1907
Match_columns 1320
No_of_seqs 821 out of 3598
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 19:20:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1907.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1907hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 1.6E-83 5.4E-88 822.8 41.5 474 658-1133 82-733 (773)
2 3i4u_A ATP-dependent RNA helic 100.0 8.9E-53 3E-57 473.7 18.8 250 885-1135 6-256 (270)
3 2xau_A PRE-mRNA-splicing facto 100.0 6.6E-49 2.3E-53 503.0 24.7 327 1-354 191-538 (773)
4 3i4u_A ATP-dependent RNA helic 100.0 1.3E-40 4.5E-45 374.8 10.3 241 1043-1301 15-255 (270)
5 4f92_B U5 small nuclear ribonu 100.0 3.1E-35 1.1E-39 400.9 28.0 241 1-251 187-474 (1724)
6 2va8_A SSO2462, SKI2-type heli 100.0 3.4E-33 1.2E-37 357.1 19.2 357 670-1028 30-622 (715)
7 2p6r_A Afuhel308 helicase; pro 100.0 6.7E-31 2.3E-35 335.3 26.0 347 671-1021 26-594 (702)
8 2p6r_A Afuhel308 helicase; pro 100.0 1.3E-31 4.5E-36 341.8 16.7 311 1-348 120-497 (702)
9 2va8_A SSO2462, SKI2-type heli 100.0 4.8E-32 1.7E-36 346.5 12.3 317 1-349 127-517 (715)
10 2zj8_A DNA helicase, putative 100.0 2.9E-29 1E-33 321.0 18.2 303 670-974 23-540 (720)
11 2zj8_A DNA helicase, putative 100.0 8.9E-30 3E-34 325.8 8.5 233 1-253 120-390 (720)
12 2db3_A ATP-dependent RNA helic 99.9 2.2E-25 7.5E-30 268.7 21.1 214 1-250 185-407 (434)
13 3eiq_A Eukaryotic initiation f 99.9 7.1E-26 2.4E-30 269.0 8.8 221 1-255 165-392 (414)
14 2jlq_A Serine protease subunit 99.9 2.7E-25 9.4E-30 269.2 12.5 214 1-248 93-309 (451)
15 3fht_A ATP-dependent RNA helic 99.9 1.8E-24 6.2E-29 256.5 17.7 224 1-251 149-380 (412)
16 2j0s_A ATP-dependent RNA helic 99.9 1.1E-24 3.6E-29 259.3 13.3 220 1-255 161-388 (410)
17 3pey_A ATP-dependent RNA helic 99.9 5E-24 1.7E-28 250.7 18.3 223 1-250 127-356 (395)
18 2i4i_A ATP-dependent RNA helic 99.9 6.3E-24 2.2E-28 252.7 17.8 220 1-255 157-388 (417)
19 2z83_A Helicase/nucleoside tri 99.9 1.4E-24 4.8E-29 263.6 12.0 215 1-250 95-313 (459)
20 1hv8_A Putative ATP-dependent 99.9 1.3E-23 4.5E-28 244.6 19.2 218 1-255 129-350 (367)
21 1s2m_A Putative ATP-dependent 99.9 1.8E-23 6.2E-28 247.6 20.3 220 1-255 145-370 (400)
22 3l9o_A ATP-dependent RNA helic 99.9 2.9E-24 9.9E-29 284.2 11.8 238 1-250 272-597 (1108)
23 1xti_A Probable ATP-dependent 99.9 5.3E-23 1.8E-27 242.4 20.5 217 1-251 134-358 (391)
24 2whx_A Serine protease/ntpase/ 99.9 4.4E-24 1.5E-28 267.4 10.4 214 1-248 260-476 (618)
25 3fmp_B ATP-dependent RNA helic 99.9 1.9E-24 6.5E-29 263.3 6.6 224 1-251 216-447 (479)
26 4a4z_A Antiviral helicase SKI2 99.9 6.6E-24 2.2E-28 278.4 11.1 304 1-334 129-563 (997)
27 3i5x_A ATP-dependent RNA helic 99.9 3.8E-23 1.3E-27 256.8 16.3 225 1-253 207-452 (563)
28 3sqw_A ATP-dependent RNA helic 99.9 7.3E-23 2.5E-27 255.5 16.3 225 1-253 156-401 (579)
29 2v1x_A ATP-dependent DNA helic 99.9 8.3E-23 2.8E-27 254.9 16.2 225 1-255 142-379 (591)
30 1fuu_A Yeast initiation factor 99.9 8.8E-24 3E-28 249.1 6.9 221 1-255 144-371 (394)
31 2v6i_A RNA helicase; membrane, 99.9 4.4E-23 1.5E-27 248.5 12.2 204 1-237 76-280 (431)
32 1yks_A Genome polyprotein [con 99.9 6E-23 2E-27 247.9 13.0 213 2-248 83-297 (440)
33 2z0m_A 337AA long hypothetical 99.9 2E-22 6.8E-27 232.1 15.0 207 1-248 111-321 (337)
34 3o8b_A HCV NS3 protease/helica 99.9 1.3E-22 4.6E-27 252.6 12.8 211 1-253 303-517 (666)
35 3rc3_A ATP-dependent RNA helic 99.9 2.8E-22 9.7E-27 252.2 14.8 235 15-279 236-476 (677)
36 1oyw_A RECQ helicase, ATP-depe 99.9 3.5E-22 1.2E-26 246.3 15.2 220 1-255 121-348 (523)
37 2wv9_A Flavivirin protease NS2 99.9 4.4E-22 1.5E-26 251.0 15.0 213 1-248 315-531 (673)
38 2xgj_A ATP-dependent RNA helic 99.9 4.2E-22 1.4E-26 261.5 15.3 238 1-250 174-499 (1010)
39 4f92_B U5 small nuclear ribonu 99.9 1.4E-21 4.7E-26 267.2 17.1 261 1-270 1026-1329(1724)
40 3fho_A ATP-dependent RNA helic 99.9 1.6E-22 5.6E-27 248.5 6.5 222 1-249 241-469 (508)
41 3o8b_A HCV NS3 protease/helica 99.9 3.7E-22 1.3E-26 248.7 9.0 175 662-852 209-516 (666)
42 3eaq_A Heat resistant RNA depe 99.8 7.6E-22 2.6E-26 215.2 8.2 133 86-252 8-140 (212)
43 2ykg_A Probable ATP-dependent 99.8 1.1E-21 3.8E-26 249.7 10.7 114 111-252 396-518 (696)
44 3oiy_A Reverse gyrase helicase 99.8 1.9E-21 6.3E-26 232.3 8.0 209 1-250 123-365 (414)
45 3llm_A ATP-dependent RNA helic 99.8 1.8E-20 6.1E-25 207.3 13.2 137 659-797 50-190 (235)
46 3i32_A Heat resistant RNA depe 99.8 2E-21 6.8E-26 222.7 5.2 202 84-331 3-212 (300)
47 1wp9_A ATP-dependent RNA helic 99.8 2.9E-20 1E-24 223.2 15.7 111 111-252 359-477 (494)
48 4a2p_A RIG-I, retinoic acid in 99.8 5.1E-20 1.7E-24 227.1 17.6 118 111-252 388-510 (556)
49 3tbk_A RIG-I helicase domain; 99.8 2.7E-20 9.2E-25 229.1 11.4 123 107-252 383-509 (555)
50 2z83_A Helicase/nucleoside tri 99.8 1.1E-19 3.8E-24 220.5 11.9 163 679-850 15-313 (459)
51 4gl2_A Interferon-induced heli 99.8 1E-19 3.6E-24 231.6 9.4 102 113-235 400-509 (699)
52 4a2q_A RIG-I, retinoic acid in 99.8 7.7E-19 2.6E-23 227.1 16.6 118 111-252 629-751 (797)
53 4ddu_A Reverse gyrase; topoiso 99.8 7E-20 2.4E-24 242.4 6.9 230 1-255 180-498 (1104)
54 2v6i_A RNA helicase; membrane, 99.8 1.5E-19 5.1E-24 217.7 7.0 281 684-1018 1-430 (431)
55 4a2w_A RIG-I, retinoic acid in 99.8 4E-18 1.4E-22 223.5 16.6 119 111-252 629-751 (936)
56 2whx_A Serine protease/ntpase/ 99.7 2.7E-18 9.1E-23 215.1 12.9 173 665-849 169-477 (618)
57 2hjv_A ATP-dependent RNA helic 99.7 1.1E-17 3.9E-22 174.4 14.6 140 82-255 8-147 (163)
58 1tf5_A Preprotein translocase 99.7 5.7E-18 1.9E-22 213.0 14.2 123 94-250 415-545 (844)
59 2eyq_A TRCF, transcription-rep 99.7 6.8E-18 2.3E-22 224.7 15.5 206 2-250 713-922 (1151)
60 2jlq_A Serine protease subunit 99.7 7.6E-18 2.6E-22 204.0 13.8 161 678-848 12-309 (451)
61 3rc3_A ATP-dependent RNA helic 99.7 3.3E-18 1.1E-22 215.3 10.2 201 684-913 154-499 (677)
62 2rb4_A ATP-dependent RNA helic 99.7 1.2E-17 3.9E-22 176.3 12.6 144 83-254 7-151 (175)
63 1gm5_A RECG; helicase, replica 99.7 1.2E-18 4E-23 222.5 5.3 207 1-248 477-695 (780)
64 1fuk_A Eukaryotic initiation f 99.7 6.5E-18 2.2E-22 176.5 9.4 137 84-254 4-141 (165)
65 1t5i_A C_terminal domain of A 99.7 1.8E-17 6.1E-22 174.7 12.2 135 82-250 4-138 (172)
66 2d7d_A Uvrabc system protein B 99.7 8.5E-18 2.9E-22 212.4 9.5 168 49-250 385-556 (661)
67 1gku_B Reverse gyrase, TOP-RG; 99.7 1.8E-18 6.3E-23 228.7 3.6 223 1-250 161-456 (1054)
68 2p6n_A ATP-dependent RNA helic 99.7 2.1E-17 7.1E-22 177.3 11.0 149 67-250 10-161 (191)
69 2jgn_A DBX, DDX3, ATP-dependen 99.7 1.9E-17 6.7E-22 176.6 10.6 140 82-254 18-157 (185)
70 1c4o_A DNA nucleotide excision 99.7 4.4E-17 1.5E-21 206.0 13.5 167 50-250 380-550 (664)
71 2fsf_A Preprotein translocase 99.7 2.2E-16 7.5E-21 198.1 15.1 123 94-250 424-583 (853)
72 3h1t_A Type I site-specific re 99.7 3.9E-16 1.3E-20 195.2 15.3 227 2-252 281-564 (590)
73 1nkt_A Preprotein translocase 99.7 5.4E-16 1.9E-20 194.8 16.2 121 95-249 444-616 (922)
74 2fwr_A DNA repair protein RAD2 99.6 9E-17 3.1E-21 195.1 5.9 116 103-250 339-454 (472)
75 2yjt_D ATP-dependent RNA helic 99.4 2.1E-17 7.3E-22 173.5 0.0 121 104-254 21-141 (170)
76 2oca_A DAR protein, ATP-depend 99.6 1.4E-15 4.7E-20 186.5 12.2 210 1-247 210-455 (510)
77 3eiq_A Eukaryotic initiation f 99.6 9.7E-15 3.3E-19 173.1 14.0 128 666-794 58-194 (414)
78 1yks_A Genome polyprotein [con 99.6 9.4E-15 3.2E-19 176.4 13.7 160 681-848 4-297 (440)
79 3l9o_A ATP-dependent RNA helic 99.5 1.4E-14 4.8E-19 192.0 14.3 119 667-793 181-300 (1108)
80 2wv9_A Flavivirin protease NS2 99.5 1.3E-14 4.6E-19 183.0 10.3 119 666-795 224-344 (673)
81 3jux_A Protein translocase sub 99.5 5.9E-14 2E-18 173.0 14.1 165 51-250 410-587 (822)
82 4a4z_A Antiviral helicase SKI2 99.5 9.9E-15 3.4E-19 191.8 7.5 119 670-794 39-158 (997)
83 1hv8_A Putative ATP-dependent 99.5 1.1E-13 3.9E-18 160.7 12.8 122 672-794 30-158 (367)
84 3fht_A ATP-dependent RNA helic 99.5 4E-13 1.4E-17 159.0 17.5 123 672-794 49-179 (412)
85 3dmq_A RNA polymerase-associat 99.4 6.5E-14 2.2E-18 184.1 9.5 123 101-250 491-615 (968)
86 3pey_A ATP-dependent RNA helic 99.4 7.3E-13 2.5E-17 155.4 14.6 123 671-794 28-156 (395)
87 2w00_A HSDR, R.ECOR124I; ATP-b 99.4 1.6E-12 5.3E-17 170.4 17.4 223 1-248 381-707 (1038)
88 1s2m_A Putative ATP-dependent 99.4 2.9E-12 9.8E-17 151.4 17.6 122 671-793 44-173 (400)
89 3fmp_B ATP-dependent RNA helic 99.4 1.2E-12 4E-17 159.3 13.7 123 672-794 116-246 (479)
90 1z63_A Helicase of the SNF2/RA 99.3 1.8E-12 6.2E-17 158.4 10.5 113 112-251 340-454 (500)
91 2ykg_A Probable ATP-dependent 99.3 4E-12 1.4E-16 161.6 13.7 123 671-794 14-147 (696)
92 2j0s_A ATP-dependent RNA helic 99.3 1.1E-11 3.7E-16 147.1 15.7 123 671-794 60-190 (410)
93 3fho_A ATP-dependent RNA helic 99.3 2.6E-12 9E-17 157.8 10.4 122 673-794 144-270 (508)
94 2z0m_A 337AA long hypothetical 99.3 1E-11 3.5E-16 142.6 14.3 118 671-794 17-140 (337)
95 1z3i_X Similar to RAD54-like; 99.3 1.2E-12 4E-17 165.4 6.2 112 111-250 414-528 (644)
96 2i4i_A ATP-dependent RNA helic 99.3 2E-11 6.7E-16 144.9 16.3 123 671-794 38-186 (417)
97 1xti_A Probable ATP-dependent 99.3 2.7E-11 9.4E-16 142.2 15.2 124 671-794 31-163 (391)
98 1fuu_A Yeast initiation factor 99.2 1.1E-11 3.6E-16 145.8 9.6 123 671-794 44-173 (394)
99 2v1x_A ATP-dependent DNA helic 99.2 1.3E-10 4.3E-15 145.2 14.5 110 673-794 47-176 (591)
100 1z5z_A Helicase of the SNF2/RA 99.1 1.1E-10 3.6E-15 132.0 8.3 129 94-251 95-225 (271)
101 3i5x_A ATP-dependent RNA helic 99.1 1.5E-10 5.3E-15 143.4 10.2 124 671-794 95-237 (563)
102 2db3_A ATP-dependent RNA helic 99.1 6.8E-10 2.3E-14 133.6 14.6 122 672-794 80-214 (434)
103 3ber_A Probable ATP-dependent 99.1 3.8E-10 1.3E-14 125.6 11.3 123 670-793 65-196 (249)
104 3llm_A ATP-dependent RNA helic 99.0 1E-10 3.5E-15 129.0 6.1 75 1-77 161-235 (235)
105 1oyw_A RECQ helicase, ATP-depe 99.0 4.8E-10 1.7E-14 138.1 11.2 111 672-794 27-150 (523)
106 1qde_A EIF4A, translation init 99.0 1.5E-09 5.1E-14 118.0 12.2 123 671-794 37-166 (224)
107 3sqw_A ATP-dependent RNA helic 99.0 8.7E-10 3E-14 137.4 11.0 124 671-794 44-186 (579)
108 3dkp_A Probable ATP-dependent 99.0 4.1E-09 1.4E-13 116.4 14.2 123 671-794 52-186 (245)
109 2pl3_A Probable ATP-dependent 99.0 2E-09 6.8E-14 118.2 11.5 123 670-793 47-181 (236)
110 1vec_A ATP-dependent RNA helic 98.9 4.9E-09 1.7E-13 112.2 13.9 124 671-794 26-157 (206)
111 1gm5_A RECG; helicase, replica 98.9 2.9E-09 9.8E-14 136.3 14.1 121 667-794 363-501 (780)
112 3mwy_W Chromo domain-containin 98.9 2.7E-09 9.3E-14 138.0 13.9 112 113-252 572-686 (800)
113 2gxq_A Heat resistant RNA depe 98.9 4.4E-09 1.5E-13 112.6 13.2 122 670-794 23-155 (207)
114 3bor_A Human initiation factor 98.9 4E-09 1.4E-13 116.2 12.2 123 671-794 53-184 (237)
115 3iuy_A Probable ATP-dependent 98.9 7.5E-09 2.6E-13 112.9 12.3 120 672-793 44-177 (228)
116 2xgj_A ATP-dependent RNA helic 98.9 4.9E-09 1.7E-13 138.0 12.4 117 669-793 85-202 (1010)
117 3b6e_A Interferon-induced heli 98.9 2.2E-09 7.4E-14 115.4 7.5 127 666-794 29-173 (216)
118 2oxc_A Probable ATP-dependent 98.9 1E-08 3.5E-13 112.3 12.6 124 671-794 47-177 (230)
119 1q0u_A Bstdead; DEAD protein, 98.8 8.6E-09 2.9E-13 111.9 11.1 123 671-794 27-161 (219)
120 1t6n_A Probable ATP-dependent 98.8 1.6E-08 5.5E-13 109.6 13.3 124 671-794 37-169 (220)
121 3ly5_A ATP-dependent RNA helic 98.8 5.8E-09 2E-13 116.9 8.9 129 671-803 77-218 (262)
122 3oiy_A Reverse gyrase helicase 98.8 7.6E-09 2.6E-13 123.1 9.8 122 667-794 18-150 (414)
123 2eyq_A TRCF, transcription-rep 98.8 3.3E-08 1.1E-12 132.0 14.9 116 672-794 605-736 (1151)
124 1wrb_A DJVLGB; RNA helicase, D 98.7 4.3E-08 1.5E-12 108.7 12.4 122 672-794 47-185 (253)
125 3fmo_B ATP-dependent RNA helic 98.7 7.1E-08 2.4E-12 110.4 13.7 123 672-794 116-246 (300)
126 1wp9_A ATP-dependent RNA helic 98.7 7.1E-09 2.4E-13 124.0 5.0 124 668-794 7-136 (494)
127 4gl2_A Interferon-induced heli 98.7 5.1E-09 1.7E-13 133.2 2.6 128 666-793 3-146 (699)
128 3fe2_A Probable ATP-dependent 98.6 4.2E-08 1.4E-12 108.2 8.9 121 672-793 53-186 (242)
129 1rif_A DAR protein, DNA helica 98.6 3.7E-08 1.3E-12 111.3 7.9 122 669-794 112-236 (282)
130 3tbk_A RIG-I helicase domain; 98.6 1.1E-07 3.6E-12 116.8 12.4 125 670-795 4-139 (555)
131 4a2p_A RIG-I, retinoic acid in 98.6 1.3E-07 4.3E-12 116.3 11.4 125 670-795 7-142 (556)
132 1gku_B Reverse gyrase, TOP-RG; 98.6 5.1E-08 1.7E-12 129.3 7.6 115 673-794 59-186 (1054)
133 2fwr_A DNA repair protein RAD2 98.5 8.1E-08 2.8E-12 116.3 8.7 112 668-794 91-203 (472)
134 4ddu_A Reverse gyrase; topoiso 98.5 1.7E-07 5.8E-12 124.5 10.9 120 670-794 78-207 (1104)
135 2fz4_A DNA repair protein RAD2 98.5 3.1E-07 1.1E-11 101.4 10.1 110 670-794 93-203 (237)
136 3eaq_A Heat resistant RNA depe 98.5 5.3E-07 1.8E-11 97.8 11.3 84 822-905 109-211 (212)
137 4a2q_A RIG-I, retinoic acid in 98.4 4E-07 1.4E-11 117.7 11.7 123 671-794 249-382 (797)
138 2oca_A DAR protein, ATP-depend 98.4 1.6E-07 5.4E-12 114.9 7.3 122 670-795 113-237 (510)
139 4a2w_A RIG-I, retinoic acid in 98.4 6.7E-07 2.3E-11 117.5 12.0 125 669-794 247-382 (936)
140 3i32_A Heat resistant RNA depe 98.4 1.8E-07 6.3E-12 106.9 4.7 88 823-910 107-213 (300)
141 3iuy_A Probable ATP-dependent 98.1 3E-06 1E-10 92.2 6.5 71 1-72 149-223 (228)
142 1qde_A EIF4A, translation init 98.1 3E-06 1E-10 91.7 6.2 81 1-82 137-221 (224)
143 3fe2_A Probable ATP-dependent 98.0 4.3E-06 1.5E-10 92.1 6.0 77 1-78 158-238 (242)
144 3ber_A Probable ATP-dependent 98.0 5.6E-06 1.9E-10 91.8 6.0 76 1-77 167-247 (249)
145 3h1t_A Type I site-specific re 97.9 6.1E-06 2.1E-10 102.9 6.1 118 671-794 179-313 (590)
146 2gxq_A Heat resistant RNA depe 97.9 8E-06 2.7E-10 87.0 6.0 75 1-76 126-204 (207)
147 1q0u_A Bstdead; DEAD protein, 97.9 7.7E-06 2.6E-10 88.5 5.9 76 1-77 132-211 (219)
148 3fmo_B ATP-dependent RNA helic 97.9 7.9E-06 2.7E-10 93.4 6.1 76 1-77 216-297 (300)
149 3bor_A Human initiation factor 97.9 8.6E-06 2.9E-10 89.4 6.0 75 1-76 155-233 (237)
150 2pl3_A Probable ATP-dependent 97.9 9.1E-06 3.1E-10 88.9 6.0 78 1-79 152-234 (236)
151 1vec_A ATP-dependent RNA helic 97.9 1.5E-05 5E-10 85.1 7.0 71 1-72 128-202 (206)
152 2oxc_A Probable ATP-dependent 97.9 9.5E-06 3.2E-10 88.6 5.4 75 1-76 148-227 (230)
153 3ly5_A ATP-dependent RNA helic 97.8 1.4E-05 4.6E-10 89.4 6.0 73 1-74 182-259 (262)
154 3dkp_A Probable ATP-dependent 97.7 2.9E-05 9.9E-10 85.3 7.0 78 1-79 155-242 (245)
155 2vl7_A XPD; helicase, unknown 97.7 1.3E-05 4.3E-10 99.2 4.0 132 98-249 370-520 (540)
156 1t6n_A Probable ATP-dependent 97.7 3.9E-05 1.3E-09 82.8 6.8 74 1-75 140-218 (220)
157 1wrb_A DJVLGB; RNA helicase, D 97.6 4.3E-05 1.5E-09 84.5 6.3 77 1-78 156-240 (253)
158 2ipc_A Preprotein translocase 97.4 0.0061 2.1E-07 77.6 21.6 78 51-134 379-464 (997)
159 3crv_A XPD/RAD3 related DNA he 97.2 0.00052 1.8E-08 84.9 9.6 111 676-794 13-184 (551)
160 4b3f_X DNA-binding protein smu 97.1 0.00028 9.7E-09 89.0 5.7 63 673-737 193-255 (646)
161 1z63_A Helicase of the SNF2/RA 97.1 0.00043 1.5E-08 84.2 6.8 118 671-794 38-160 (500)
162 2w00_A HSDR, R.ECOR124I; ATP-b 97.1 0.00024 8.1E-09 93.6 4.7 106 686-794 301-412 (1038)
163 2b8t_A Thymidine kinase; deoxy 97.1 0.00077 2.6E-08 73.6 7.6 90 683-793 10-99 (223)
164 1w36_D RECD, exodeoxyribonucle 97.0 0.0012 3.9E-08 82.8 9.3 62 674-736 154-217 (608)
165 3e1s_A Exodeoxyribonuclease V, 96.9 0.0011 3.7E-08 82.4 7.5 59 675-735 194-252 (574)
166 3upu_A ATP-dependent DNA helic 96.8 0.0018 6.2E-08 78.2 8.6 57 678-735 37-94 (459)
167 2vl7_A XPD; helicase, unknown 96.7 0.0021 7.3E-08 79.3 8.7 51 677-734 18-70 (540)
168 3dmq_A RNA polymerase-associat 96.7 0.0015 5.2E-08 86.1 7.4 123 671-794 154-284 (968)
169 2gk6_A Regulator of nonsense t 96.5 0.0054 1.8E-07 77.0 10.0 59 678-737 188-246 (624)
170 2xzl_A ATP-dependent helicase 96.3 0.0053 1.8E-07 79.1 8.5 60 677-737 367-426 (802)
171 2orw_A Thymidine kinase; TMTK, 96.3 0.003 1E-07 66.8 4.8 38 685-724 3-40 (184)
172 2wjy_A Regulator of nonsense t 96.1 0.011 3.6E-07 76.3 9.4 59 678-737 364-422 (800)
173 1xx6_A Thymidine kinase; NESG, 95.9 0.0065 2.2E-07 64.7 5.4 39 684-724 7-45 (191)
174 1tf5_A Preprotein translocase 95.8 0.0065 2.2E-07 77.3 5.5 107 681-794 94-214 (844)
175 1nkt_A Preprotein translocase 95.7 0.0054 1.8E-07 78.2 4.2 100 689-793 128-241 (922)
176 2w58_A DNAI, primosome compone 95.6 0.014 4.8E-07 61.7 6.6 23 686-708 55-77 (202)
177 1z3i_X Similar to RAD54-like; 95.6 0.014 4.9E-07 73.4 7.5 109 683-794 77-203 (644)
178 2ipc_A Preprotein translocase 95.5 0.021 7E-07 72.9 8.4 105 682-793 91-212 (997)
179 2fsf_A Preprotein translocase 95.5 0.0073 2.5E-07 76.8 4.3 106 682-794 86-205 (853)
180 1njg_A DNA polymerase III subu 95.5 0.028 9.7E-07 59.8 8.4 34 676-709 33-69 (250)
181 4a15_A XPD helicase, ATP-depen 95.4 0.024 8.2E-07 71.0 8.8 179 51-249 376-583 (620)
182 2r2a_A Uncharacterized protein 95.4 0.029 1E-06 60.0 8.0 23 687-709 7-29 (199)
183 3mwy_W Chromo domain-containin 95.2 0.018 6E-07 74.5 6.6 120 670-794 236-378 (800)
184 1jr3_A DNA polymerase III subu 95.1 0.062 2.1E-06 62.1 10.5 33 676-708 26-61 (373)
185 1vma_A Cell division protein F 95.0 0.022 7.4E-07 65.1 5.9 57 684-740 103-159 (306)
186 3ec2_A DNA replication protein 94.9 0.04 1.4E-06 57.1 7.3 24 684-707 37-60 (180)
187 3bos_A Putative DNA replicatio 94.9 0.021 7.3E-07 61.3 5.4 25 684-708 51-75 (242)
188 3crv_A XPD/RAD3 related DNA he 94.9 0.28 9.5E-06 60.4 15.9 175 51-245 316-527 (551)
189 1fnn_A CDC6P, cell division co 94.8 0.035 1.2E-06 64.5 7.4 55 687-741 46-100 (389)
190 3kl4_A SRP54, signal recogniti 94.8 0.033 1.1E-06 66.5 7.1 57 685-741 97-153 (433)
191 2chg_A Replication factor C sm 94.7 0.035 1.2E-06 58.4 6.3 33 675-707 26-60 (226)
192 3b9p_A CG5977-PA, isoform A; A 94.7 0.035 1.2E-06 62.4 6.6 23 685-707 54-76 (297)
193 2kjq_A DNAA-related protein; s 94.7 0.015 5.1E-07 59.2 3.2 23 684-706 35-57 (149)
194 1a5t_A Delta prime, HOLB; zinc 94.6 0.1 3.4E-06 60.1 10.5 31 676-706 12-45 (334)
195 3dm5_A SRP54, signal recogniti 94.6 0.019 6.6E-07 68.6 4.5 57 685-741 100-156 (443)
196 3pfi_A Holliday junction ATP-d 94.6 0.033 1.1E-06 63.8 6.3 21 686-706 56-76 (338)
197 2v1u_A Cell division control p 94.4 0.034 1.1E-06 64.4 5.9 25 684-708 43-67 (387)
198 2qby_B CDC6 homolog 3, cell di 94.4 0.056 1.9E-06 62.7 7.8 24 685-708 45-68 (384)
199 2pt7_A CAG-ALFA; ATPase, prote 94.4 0.05 1.7E-06 62.7 7.1 30 677-706 163-192 (330)
200 2orv_A Thymidine kinase; TP4A 94.2 0.065 2.2E-06 58.5 7.1 39 684-724 18-56 (234)
201 2qgz_A Helicase loader, putati 94.2 0.074 2.5E-06 60.7 7.9 22 685-706 152-173 (308)
202 1rif_A DAR protein, DNA helica 94.1 0.014 4.9E-07 65.3 1.7 53 1-60 210-262 (282)
203 3vkw_A Replicase large subunit 94.1 0.03 1E-06 66.8 4.4 47 683-736 159-205 (446)
204 3cpe_A Terminase, DNA packagin 93.9 0.25 8.6E-06 61.4 12.5 115 669-794 162-284 (592)
205 3h4m_A Proteasome-activating n 93.8 0.039 1.3E-06 61.5 4.7 24 683-706 49-72 (285)
206 3u61_B DNA polymerase accessor 93.7 0.13 4.3E-06 58.6 8.7 30 676-705 36-68 (324)
207 3pvs_A Replication-associated 93.6 0.024 8.4E-07 68.1 2.6 29 677-705 40-70 (447)
208 1ofh_A ATP-dependent HSL prote 93.6 0.075 2.6E-06 59.6 6.6 21 685-705 50-70 (310)
209 1hqc_A RUVB; extended AAA-ATPa 93.6 0.12 4E-06 58.6 8.2 22 685-706 38-59 (324)
210 3t15_A Ribulose bisphosphate c 93.6 0.09 3.1E-06 59.4 7.1 23 686-708 37-59 (293)
211 1w4r_A Thymidine kinase; type 93.5 0.021 7.1E-07 60.8 1.5 39 684-724 19-57 (195)
212 2qby_A CDC6 homolog 1, cell di 93.5 0.036 1.2E-06 64.0 3.7 24 685-708 45-68 (386)
213 2qz4_A Paraplegin; AAA+, SPG7, 93.5 0.079 2.7E-06 58.0 6.3 23 684-706 38-60 (262)
214 2j9r_A Thymidine kinase; TK1, 93.5 0.053 1.8E-06 58.6 4.6 39 685-725 28-66 (214)
215 3vfd_A Spastin; ATPase, microt 93.4 0.05 1.7E-06 64.0 4.6 22 685-706 148-169 (389)
216 3eie_A Vacuolar protein sortin 93.2 0.067 2.3E-06 61.2 5.4 24 685-708 51-74 (322)
217 3d8b_A Fidgetin-like protein 1 93.2 0.066 2.3E-06 62.3 5.4 25 684-708 116-140 (357)
218 2px0_A Flagellar biosynthesis 93.2 0.052 1.8E-06 61.6 4.3 57 684-740 104-161 (296)
219 1xwi_A SKD1 protein; VPS4B, AA 93.2 0.13 4.4E-06 59.0 7.6 24 685-708 45-68 (322)
220 3syl_A Protein CBBX; photosynt 93.1 0.11 3.8E-06 58.4 6.8 18 686-703 68-85 (309)
221 3e2i_A Thymidine kinase; Zn-bi 93.0 0.048 1.6E-06 58.9 3.4 40 683-724 26-65 (219)
222 3b85_A Phosphate starvation-in 93.0 0.067 2.3E-06 57.5 4.5 31 675-705 12-42 (208)
223 1ls1_A Signal recognition part 92.9 0.093 3.2E-06 59.5 5.8 57 684-740 97-153 (295)
224 1l8q_A Chromosomal replication 92.9 0.086 2.9E-06 60.1 5.5 24 685-708 37-60 (324)
225 1d2n_A N-ethylmaleimide-sensit 92.8 0.069 2.4E-06 59.3 4.6 22 686-707 65-86 (272)
226 2w0m_A SSO2452; RECA, SSPF, un 92.8 0.017 5.9E-07 61.8 -0.4 32 677-708 14-46 (235)
227 2qp9_X Vacuolar protein sortin 92.8 0.078 2.7E-06 61.7 5.1 25 685-709 84-108 (355)
228 1sxj_C Activator 1 40 kDa subu 92.7 0.15 5.3E-06 58.5 7.4 31 676-706 35-67 (340)
229 3cf0_A Transitional endoplasmi 92.7 0.32 1.1E-05 55.0 9.9 27 683-709 47-73 (301)
230 2jgn_A DBX, DDX3, ATP-dependen 92.6 0.33 1.1E-05 50.8 9.2 30 822-851 124-154 (185)
231 1sxj_A Activator 1 95 kDa subu 92.4 0.24 8.2E-06 60.5 8.9 25 685-709 77-101 (516)
232 3k1j_A LON protease, ATP-depen 92.3 0.49 1.7E-05 59.0 11.6 32 675-706 50-81 (604)
233 2bjv_A PSP operon transcriptio 92.2 0.17 5.8E-06 55.8 6.7 29 681-710 25-53 (265)
234 1um8_A ATP-dependent CLP prote 92.2 0.2 6.9E-06 58.4 7.6 21 685-705 72-92 (376)
235 1lv7_A FTSH; alpha/beta domain 92.2 0.21 7.1E-06 54.8 7.3 22 685-706 45-66 (257)
236 1kgd_A CASK, peripheral plasma 92.1 0.058 2E-06 56.2 2.6 23 684-706 4-26 (180)
237 3tr0_A Guanylate kinase, GMP k 92.0 0.053 1.8E-06 57.1 2.2 25 682-706 4-28 (205)
238 2o0j_A Terminase, DNA packagin 91.9 0.62 2.1E-05 54.7 11.3 69 669-737 162-230 (385)
239 4fcw_A Chaperone protein CLPB; 91.8 0.068 2.3E-06 60.2 2.9 20 686-705 48-67 (311)
240 1j8m_F SRP54, signal recogniti 91.8 0.12 4.2E-06 58.5 5.1 57 685-741 98-154 (297)
241 2r62_A Cell division protease 91.7 0.086 3E-06 58.2 3.5 23 685-707 44-66 (268)
242 2r44_A Uncharacterized protein 91.6 0.081 2.8E-06 60.4 3.2 31 675-705 36-66 (331)
243 1zu4_A FTSY; GTPase, signal re 91.5 0.17 5.7E-06 58.1 5.7 47 683-729 103-149 (320)
244 2ffh_A Protein (FFH); SRP54, s 91.5 0.23 8E-06 59.1 7.1 58 684-741 97-154 (425)
245 2j41_A Guanylate kinase; GMP, 91.5 0.067 2.3E-06 56.3 2.2 24 682-705 3-26 (207)
246 1iqp_A RFCS; clamp loader, ext 91.4 0.19 6.5E-06 56.7 6.1 31 676-706 35-67 (327)
247 1znw_A Guanylate kinase, GMP k 91.4 0.078 2.7E-06 56.5 2.6 25 681-705 16-40 (207)
248 2eyu_A Twitching motility prot 91.3 0.066 2.3E-06 59.7 2.0 25 682-706 22-46 (261)
249 2chq_A Replication factor C sm 91.3 0.23 7.9E-06 55.7 6.6 20 687-706 40-59 (319)
250 2zan_A Vacuolar protein sortin 91.2 0.14 4.7E-06 61.5 4.8 25 685-709 167-191 (444)
251 1fuk_A Eukaryotic initiation f 91.2 0.54 1.8E-05 47.9 8.6 30 822-851 108-138 (165)
252 4b4t_L 26S protease subunit RP 91.0 0.2 7E-06 59.8 5.9 18 685-702 215-232 (437)
253 1lvg_A Guanylate kinase, GMP k 90.9 0.081 2.8E-06 56.1 2.1 23 684-706 3-25 (198)
254 4gp7_A Metallophosphoesterase; 90.8 0.057 2E-06 55.8 0.8 23 683-705 7-29 (171)
255 2rb4_A ATP-dependent RNA helic 90.8 0.73 2.5E-05 47.4 9.3 29 823-851 119-148 (175)
256 3umf_A Adenylate kinase; rossm 90.7 0.097 3.3E-06 56.7 2.6 25 682-706 26-50 (217)
257 2oap_1 GSPE-2, type II secreti 90.7 0.12 4E-06 63.2 3.5 30 676-705 251-280 (511)
258 1z6g_A Guanylate kinase; struc 90.6 0.092 3.2E-06 56.6 2.2 25 682-706 20-44 (218)
259 1zp6_A Hypothetical protein AT 90.6 0.066 2.2E-06 55.8 1.0 24 682-705 6-29 (191)
260 3tau_A Guanylate kinase, GMP k 90.3 0.11 3.9E-06 55.4 2.6 24 683-706 6-29 (208)
261 2yhs_A FTSY, cell division pro 90.2 0.17 5.8E-06 61.2 4.3 45 683-729 291-337 (503)
262 3lw7_A Adenylate kinase relate 90.2 0.15 5.1E-06 51.6 3.4 24 686-710 2-25 (179)
263 3a00_A Guanylate kinase, GMP k 90.2 0.1 3.6E-06 54.5 2.2 22 685-706 1-22 (186)
264 2hjv_A ATP-dependent RNA helic 90.2 1.9 6.4E-05 43.8 11.6 30 822-851 113-143 (163)
265 3e70_C DPA, signal recognition 90.1 0.2 7E-06 57.6 4.7 58 683-740 127-184 (328)
266 3pxi_A Negative regulator of g 90.0 0.42 1.4E-05 61.2 7.9 16 687-702 523-538 (758)
267 4b4t_I 26S protease regulatory 90.0 0.26 8.9E-06 58.5 5.5 69 685-793 216-285 (437)
268 2z4s_A Chromosomal replication 89.8 0.37 1.3E-05 57.7 6.8 22 685-706 130-151 (440)
269 3lnc_A Guanylate kinase, GMP k 89.7 0.086 2.9E-06 57.0 1.1 24 682-705 24-47 (231)
270 2gza_A Type IV secretion syste 89.6 0.2 6.8E-06 58.4 4.2 45 677-723 167-211 (361)
271 4b4t_J 26S protease regulatory 89.6 0.15 5.2E-06 60.2 3.1 71 684-793 181-251 (405)
272 2gno_A DNA polymerase III, gam 89.6 0.75 2.6E-05 52.3 8.8 29 676-704 7-37 (305)
273 1r6b_X CLPA protein; AAA+, N-t 89.5 0.22 7.5E-06 63.8 4.8 18 687-704 490-507 (758)
274 3sr0_A Adenylate kinase; phosp 89.4 0.18 6.3E-06 54.0 3.4 25 687-711 2-26 (206)
275 1kht_A Adenylate kinase; phosp 89.3 0.15 5.2E-06 52.7 2.6 22 685-706 3-24 (192)
276 4b4t_K 26S protease regulatory 89.1 0.18 6.2E-06 60.1 3.3 19 684-702 205-223 (428)
277 3c8u_A Fructokinase; YP_612366 89.0 0.15 5E-06 54.4 2.2 22 684-705 21-42 (208)
278 1jbk_A CLPB protein; beta barr 88.9 0.34 1.2E-05 49.4 4.9 33 676-708 32-66 (195)
279 1zd8_A GTP:AMP phosphotransfer 88.9 0.23 7.9E-06 53.5 3.8 29 682-710 4-32 (227)
280 2c95_A Adenylate kinase 1; tra 88.7 0.26 8.8E-06 51.3 3.9 29 682-710 6-34 (196)
281 3vaa_A Shikimate kinase, SK; s 88.7 0.25 8.4E-06 52.1 3.7 29 682-710 22-50 (199)
282 3jux_A Protein translocase sub 88.6 0.83 2.8E-05 57.5 8.7 80 665-752 68-152 (822)
283 3tif_A Uncharacterized ABC tra 88.6 0.13 4.5E-06 56.2 1.5 24 682-705 28-51 (235)
284 3n70_A Transport activator; si 88.6 0.18 6.3E-06 50.4 2.5 33 676-709 15-47 (145)
285 3te6_A Regulatory protein SIR3 88.5 0.59 2E-05 53.5 6.9 32 678-709 36-69 (318)
286 4b4t_M 26S protease regulatory 88.5 0.16 5.6E-06 60.5 2.4 18 685-702 215-232 (434)
287 2qor_A Guanylate kinase; phosp 88.4 0.17 5.8E-06 53.6 2.2 24 683-706 10-33 (204)
288 2fz4_A DNA repair protein RAD2 88.3 0.28 9.5E-06 53.6 3.9 52 2-61 178-229 (237)
289 3co5_A Putative two-component 88.3 0.2 6.7E-06 50.1 2.5 27 676-702 18-44 (143)
290 2d7d_A Uvrabc system protein B 88.3 0.93 3.2E-05 57.1 9.2 101 715-850 445-556 (661)
291 3b9q_A Chloroplast SRP recepto 88.2 0.28 9.7E-06 55.7 4.0 46 683-730 98-145 (302)
292 1ly1_A Polynucleotide kinase; 88.2 0.18 6.3E-06 51.5 2.3 21 686-706 3-23 (181)
293 3ney_A 55 kDa erythrocyte memb 88.2 0.25 8.4E-06 52.7 3.3 24 684-707 18-41 (197)
294 2ewv_A Twitching motility prot 88.1 0.13 4.6E-06 60.1 1.3 25 682-706 133-157 (372)
295 3kb2_A SPBC2 prophage-derived 88.1 0.28 9.5E-06 49.8 3.6 21 686-706 2-22 (173)
296 4eun_A Thermoresistant glucoki 88.0 0.2 7E-06 52.8 2.6 24 683-706 27-50 (200)
297 1s96_A Guanylate kinase, GMP k 88.0 0.2 7E-06 54.2 2.6 25 682-706 13-37 (219)
298 2ce7_A Cell division protein F 87.9 0.56 1.9E-05 56.7 6.6 23 686-708 50-72 (476)
299 1n0w_A DNA repair protein RAD5 87.9 0.24 8.4E-06 53.3 3.2 34 676-709 14-48 (243)
300 2bwj_A Adenylate kinase 5; pho 87.7 0.39 1.3E-05 50.0 4.5 26 681-706 8-33 (199)
301 2v3c_C SRP54, signal recogniti 87.7 0.18 6.2E-06 60.2 2.1 45 686-730 100-144 (432)
302 3jvv_A Twitching mobility prot 87.6 0.26 8.9E-06 57.4 3.3 25 682-706 120-144 (356)
303 2xxa_A Signal recognition part 87.6 0.34 1.2E-05 57.8 4.4 56 686-741 101-157 (433)
304 2zts_A Putative uncharacterize 87.6 0.11 3.7E-06 56.3 0.1 34 676-709 20-54 (251)
305 2ehv_A Hypothetical protein PH 87.6 0.2 6.7E-06 54.3 2.1 26 681-706 26-51 (251)
306 2cbz_A Multidrug resistance-as 87.6 0.17 5.7E-06 55.5 1.5 24 682-705 28-51 (237)
307 4b4t_H 26S protease regulatory 87.5 0.24 8.2E-06 59.3 2.9 19 683-701 241-259 (467)
308 2v54_A DTMP kinase, thymidylat 87.5 0.23 7.9E-06 52.0 2.6 22 684-705 3-24 (204)
309 4a74_A DNA repair and recombin 87.4 0.13 4.4E-06 55.0 0.5 32 676-707 15-47 (231)
310 2c9o_A RUVB-like 1; hexameric 87.4 0.2 6.7E-06 60.3 2.2 17 686-702 64-80 (456)
311 1kag_A SKI, shikimate kinase I 87.4 0.21 7.3E-06 50.9 2.2 21 685-705 4-24 (173)
312 2cvh_A DNA repair and recombin 87.4 0.18 6.2E-06 53.4 1.7 32 676-707 10-42 (220)
313 2p65_A Hypothetical protein PF 87.4 0.34 1.2E-05 49.4 3.7 32 677-708 33-66 (187)
314 3b6e_A Interferon-induced heli 87.2 0.3 1E-05 51.4 3.2 42 1-43 138-186 (216)
315 3lfu_A DNA helicase II; SF1 he 87.1 0.94 3.2E-05 56.5 8.3 57 684-741 21-80 (647)
316 2pcj_A ABC transporter, lipopr 87.1 0.17 5.9E-06 54.9 1.3 23 682-704 27-49 (224)
317 3gfo_A Cobalt import ATP-bindi 87.0 0.18 6.1E-06 56.6 1.4 24 682-705 31-54 (275)
318 1zuh_A Shikimate kinase; alpha 86.8 0.37 1.3E-05 49.0 3.6 27 685-711 7-33 (168)
319 3cm0_A Adenylate kinase; ATP-b 86.8 0.34 1.2E-05 50.0 3.3 26 685-710 4-29 (186)
320 1nks_A Adenylate kinase; therm 86.7 0.24 8.3E-06 51.2 2.2 20 687-706 3-22 (194)
321 3trf_A Shikimate kinase, SK; a 86.7 0.39 1.3E-05 49.6 3.8 26 685-710 5-30 (185)
322 1htw_A HI0065; nucleotide-bind 86.7 0.33 1.1E-05 49.7 3.2 24 683-706 31-54 (158)
323 1knq_A Gluconate kinase; ALFA/ 86.7 0.24 8.2E-06 50.8 2.1 22 685-706 8-29 (175)
324 2bbw_A Adenylate kinase 4, AK4 86.7 0.39 1.3E-05 52.4 3.9 28 684-711 26-53 (246)
325 2zpa_A Uncharacterized protein 86.7 0.45 1.5E-05 59.5 4.9 81 677-792 182-264 (671)
326 3m6a_A ATP-dependent protease 86.7 0.45 1.5E-05 58.5 4.9 22 684-705 107-128 (543)
327 1ukz_A Uridylate kinase; trans 86.5 0.38 1.3E-05 50.5 3.6 25 686-710 16-40 (203)
328 2rhm_A Putative kinase; P-loop 86.5 0.32 1.1E-05 50.4 3.0 26 685-710 5-30 (193)
329 3kta_A Chromosome segregation 86.4 0.26 8.8E-06 50.9 2.2 21 686-706 27-47 (182)
330 1g6h_A High-affinity branched- 86.4 0.21 7E-06 55.4 1.5 24 682-705 30-53 (257)
331 3fb4_A Adenylate kinase; psych 86.4 0.37 1.3E-05 51.1 3.5 25 687-711 2-26 (216)
332 2ff7_A Alpha-hemolysin translo 86.3 0.21 7.1E-06 55.1 1.5 24 682-705 32-55 (247)
333 1b0u_A Histidine permease; ABC 86.3 0.21 7.2E-06 55.5 1.5 24 682-705 29-52 (262)
334 1nij_A Hypothetical protein YJ 86.3 0.37 1.3E-05 55.0 3.6 34 686-723 5-38 (318)
335 3asz_A Uridine kinase; cytidin 86.2 0.25 8.4E-06 52.4 1.9 23 683-705 4-26 (211)
336 3dl0_A Adenylate kinase; phosp 86.2 0.41 1.4E-05 50.9 3.7 24 687-710 2-25 (216)
337 1sgw_A Putative ABC transporte 86.2 0.19 6.6E-06 54.2 1.1 24 682-705 32-55 (214)
338 2z0h_A DTMP kinase, thymidylat 86.2 0.32 1.1E-05 50.5 2.8 19 687-705 2-20 (197)
339 1c4o_A DNA nucleotide excision 86.2 1.8 6.1E-05 54.6 10.1 29 822-850 522-550 (664)
340 2qen_A Walker-type ATPase; unk 86.2 0.62 2.1E-05 52.7 5.4 34 676-709 22-55 (350)
341 4g1u_C Hemin import ATP-bindin 86.1 0.21 7.3E-06 55.7 1.4 24 682-705 34-57 (266)
342 2pze_A Cystic fibrosis transme 86.1 0.22 7.4E-06 54.3 1.4 24 682-705 31-54 (229)
343 1tev_A UMP-CMP kinase; ploop, 86.0 0.39 1.3E-05 49.6 3.3 22 685-706 3-24 (196)
344 2ghi_A Transport protein; mult 86.0 0.22 7.7E-06 55.3 1.5 24 682-705 43-66 (260)
345 1ji0_A ABC transporter; ATP bi 85.9 0.23 7.8E-06 54.5 1.5 24 682-705 29-52 (240)
346 1mv5_A LMRA, multidrug resista 85.8 0.2 6.9E-06 55.0 1.0 24 682-705 25-48 (243)
347 1rz3_A Hypothetical protein rb 85.8 0.4 1.4E-05 50.7 3.3 21 685-705 22-42 (201)
348 2vp4_A Deoxynucleoside kinase; 85.8 0.28 9.4E-06 53.2 2.1 21 684-704 19-39 (230)
349 1rj9_A FTSY, signal recognitio 85.7 0.49 1.7E-05 53.8 4.2 22 685-706 102-123 (304)
350 1qf9_A UMP/CMP kinase, protein 85.7 0.4 1.4E-05 49.4 3.2 25 686-710 7-31 (194)
351 2olj_A Amino acid ABC transpor 85.7 0.24 8.2E-06 55.2 1.5 23 682-704 47-69 (263)
352 2d2e_A SUFC protein; ABC-ATPas 85.6 0.24 8.1E-06 54.7 1.5 24 682-705 26-49 (250)
353 3tlx_A Adenylate kinase 2; str 85.6 0.33 1.1E-05 53.1 2.7 26 685-710 29-54 (243)
354 3nh6_A ATP-binding cassette SU 85.6 0.18 6.2E-06 57.5 0.5 24 682-705 77-100 (306)
355 1p9r_A General secretion pathw 85.6 1 3.6E-05 53.4 7.1 26 683-708 165-190 (418)
356 2jaq_A Deoxyguanosine kinase; 85.6 0.42 1.4E-05 49.9 3.3 20 687-706 2-21 (205)
357 3iij_A Coilin-interacting nucl 85.6 0.42 1.4E-05 49.2 3.3 23 684-706 10-32 (180)
358 1qvr_A CLPB protein; coiled co 85.6 0.53 1.8E-05 61.1 4.9 22 686-708 589-610 (854)
359 1ye8_A Protein THEP1, hypothet 85.5 0.33 1.1E-05 50.7 2.4 20 687-706 2-21 (178)
360 1vpl_A ABC transporter, ATP-bi 85.4 0.25 8.5E-06 54.8 1.5 24 682-705 38-61 (256)
361 2zu0_C Probable ATP-dependent 85.4 0.25 8.5E-06 55.1 1.5 24 682-705 43-66 (267)
362 2plr_A DTMP kinase, probable t 85.4 0.65 2.2E-05 48.7 4.7 26 685-710 4-29 (213)
363 1cke_A CK, MSSA, protein (cyti 85.3 0.46 1.6E-05 50.7 3.6 26 685-710 5-30 (227)
364 2pez_A Bifunctional 3'-phospho 85.3 0.31 1E-05 50.3 2.0 22 684-705 4-25 (179)
365 2www_A Methylmalonic aciduria 85.3 1.3 4.5E-05 51.2 7.6 23 685-707 74-96 (349)
366 2bdt_A BH3686; alpha-beta prot 85.2 0.34 1.1E-05 50.4 2.3 21 686-706 3-23 (189)
367 2ixe_A Antigen peptide transpo 85.1 0.26 9E-06 55.1 1.5 24 682-705 42-65 (271)
368 1gtv_A TMK, thymidylate kinase 85.1 0.23 7.8E-06 52.5 0.9 20 687-706 2-21 (214)
369 2yz2_A Putative ABC transporte 85.0 0.27 9.2E-06 54.8 1.5 23 682-704 30-52 (266)
370 2og2_A Putative signal recogni 85.0 0.52 1.8E-05 54.9 4.0 45 683-729 155-201 (359)
371 2v9p_A Replication protein E1; 84.9 0.34 1.2E-05 55.2 2.3 27 680-706 121-147 (305)
372 2wwf_A Thymidilate kinase, put 84.9 0.36 1.2E-05 50.9 2.4 23 684-706 9-31 (212)
373 3t61_A Gluconokinase; PSI-biol 84.9 0.43 1.5E-05 50.2 3.0 21 686-706 19-39 (202)
374 1ex7_A Guanylate kinase; subst 84.9 0.47 1.6E-05 50.1 3.2 23 686-708 2-24 (186)
375 3hu3_A Transitional endoplasmi 84.8 0.57 1.9E-05 56.9 4.4 26 683-708 236-261 (489)
376 2ihy_A ABC transporter, ATP-bi 84.8 0.27 9.2E-06 55.3 1.4 24 682-705 44-67 (279)
377 2nq2_C Hypothetical ABC transp 84.6 0.27 9.4E-06 54.3 1.4 24 682-705 28-51 (253)
378 2qt1_A Nicotinamide riboside k 84.6 0.25 8.6E-06 52.2 1.0 24 682-705 18-41 (207)
379 3exa_A TRNA delta(2)-isopenten 84.6 0.33 1.1E-05 55.4 2.0 19 685-703 3-21 (322)
380 1cr0_A DNA primase/helicase; R 84.5 0.42 1.4E-05 53.6 2.9 34 675-708 25-58 (296)
381 2dr3_A UPF0273 protein PH0284; 84.5 0.54 1.8E-05 50.6 3.6 29 681-709 19-47 (247)
382 3tqc_A Pantothenate kinase; bi 84.5 1.2 4.2E-05 50.9 6.8 19 687-705 94-112 (321)
383 2yvu_A Probable adenylyl-sulfa 84.5 0.35 1.2E-05 50.2 2.0 23 684-706 12-34 (186)
384 2pbr_A DTMP kinase, thymidylat 84.4 0.44 1.5E-05 49.3 2.8 19 687-705 2-20 (195)
385 2qi9_C Vitamin B12 import ATP- 84.4 0.29 9.9E-06 54.0 1.4 23 682-704 23-45 (249)
386 1qhx_A CPT, protein (chloramph 84.4 0.4 1.4E-05 49.1 2.4 22 685-706 3-24 (178)
387 2cdn_A Adenylate kinase; phosp 84.3 0.54 1.8E-05 49.4 3.4 25 686-710 21-45 (201)
388 1e4v_A Adenylate kinase; trans 84.2 0.51 1.7E-05 50.2 3.2 24 687-710 2-25 (214)
389 4eaq_A DTMP kinase, thymidylat 84.2 0.72 2.5E-05 50.0 4.5 23 684-706 25-47 (229)
390 1f2t_A RAD50 ABC-ATPase; DNA d 84.1 0.41 1.4E-05 48.4 2.3 21 685-705 23-43 (149)
391 1aky_A Adenylate kinase; ATP:A 84.1 0.57 2E-05 50.0 3.6 26 685-710 4-29 (220)
392 2xb4_A Adenylate kinase; ATP-b 84.0 0.54 1.8E-05 50.6 3.3 24 687-710 2-25 (223)
393 2onk_A Molybdate/tungstate ABC 83.8 0.3 1E-05 53.6 1.3 23 682-705 22-44 (240)
394 3a8t_A Adenylate isopentenyltr 83.8 0.32 1.1E-05 56.0 1.5 21 685-705 40-60 (339)
395 2ze6_A Isopentenyl transferase 83.7 0.55 1.9E-05 51.7 3.3 18 687-704 3-20 (253)
396 3uie_A Adenylyl-sulfate kinase 83.7 0.39 1.3E-05 50.6 2.1 23 683-705 23-45 (200)
397 1zak_A Adenylate kinase; ATP:A 83.5 0.48 1.7E-05 50.7 2.7 25 686-710 6-30 (222)
398 2vli_A Antibiotic resistance p 83.5 0.58 2E-05 48.0 3.2 26 685-710 5-30 (183)
399 1gvn_B Zeta; postsegregational 83.5 0.77 2.6E-05 51.6 4.5 24 685-708 33-56 (287)
400 1m7g_A Adenylylsulfate kinase; 83.4 0.36 1.2E-05 51.4 1.6 24 682-705 22-45 (211)
401 1nn5_A Similar to deoxythymidy 83.4 0.54 1.8E-05 49.6 3.0 23 684-706 8-30 (215)
402 1xjc_A MOBB protein homolog; s 83.3 0.59 2E-05 48.5 3.1 22 686-707 5-26 (169)
403 1np6_A Molybdopterin-guanine d 83.1 0.6 2E-05 48.7 3.1 24 685-708 6-29 (174)
404 3aez_A Pantothenate kinase; tr 83.0 0.29 9.9E-06 55.9 0.7 24 682-705 87-110 (312)
405 1e6c_A Shikimate kinase; phosp 83.0 0.61 2.1E-05 47.4 3.1 20 686-705 3-22 (173)
406 1tq4_A IIGP1, interferon-induc 83.0 0.63 2.2E-05 55.2 3.6 34 673-706 57-90 (413)
407 3bh0_A DNAB-like replicative h 82.9 0.6 2.1E-05 53.2 3.3 36 675-710 58-93 (315)
408 2i3b_A HCR-ntpase, human cance 82.8 0.47 1.6E-05 50.0 2.2 22 685-706 1-22 (189)
409 1jjv_A Dephospho-COA kinase; P 82.6 0.49 1.7E-05 49.8 2.3 19 687-705 4-22 (206)
410 2bbs_A Cystic fibrosis transme 82.6 0.37 1.3E-05 54.4 1.4 24 682-705 61-84 (290)
411 1uaa_A REP helicase, protein ( 82.6 1.8 6.2E-05 54.4 7.9 55 685-741 15-73 (673)
412 1vht_A Dephospho-COA kinase; s 82.5 0.49 1.7E-05 50.4 2.3 20 685-704 4-23 (218)
413 1qvr_A CLPB protein; coiled co 82.5 1.1 3.7E-05 58.2 5.9 22 685-706 191-212 (854)
414 3foz_A TRNA delta(2)-isopenten 82.4 0.46 1.6E-05 54.1 2.1 18 686-703 11-28 (316)
415 3rlf_A Maltose/maltodextrin im 82.4 0.39 1.3E-05 56.3 1.5 24 682-705 26-49 (381)
416 2pt5_A Shikimate kinase, SK; a 82.4 0.74 2.5E-05 46.6 3.4 19 687-705 2-20 (168)
417 2jeo_A Uridine-cytidine kinase 82.3 0.42 1.4E-05 52.2 1.6 23 682-704 22-44 (245)
418 3fvq_A Fe(3+) IONS import ATP- 82.3 0.39 1.3E-05 55.9 1.4 24 682-705 27-50 (359)
419 1y63_A LMAJ004144AAA protein; 82.3 0.66 2.2E-05 48.2 3.1 22 684-705 9-30 (184)
420 1odf_A YGR205W, hypothetical 3 82.2 0.56 1.9E-05 52.9 2.7 19 685-703 31-49 (290)
421 2z43_A DNA repair and recombin 82.2 0.64 2.2E-05 53.1 3.2 34 676-709 97-131 (324)
422 1pzn_A RAD51, DNA repair and r 82.1 0.78 2.7E-05 53.1 3.9 34 676-709 121-155 (349)
423 3be4_A Adenylate kinase; malar 81.9 0.7 2.4E-05 49.4 3.2 25 686-710 6-30 (217)
424 2f1r_A Molybdopterin-guanine d 81.9 0.42 1.4E-05 49.7 1.3 21 686-706 3-23 (171)
425 2if2_A Dephospho-COA kinase; a 81.7 0.53 1.8E-05 49.4 2.2 19 687-705 3-21 (204)
426 1z47_A CYSA, putative ABC-tran 81.7 0.43 1.5E-05 55.5 1.5 24 682-705 38-61 (355)
427 3hjn_A DTMP kinase, thymidylat 81.5 1.3 4.4E-05 46.9 5.0 18 687-704 2-19 (197)
428 1in4_A RUVB, holliday junction 81.5 0.72 2.5E-05 52.9 3.3 20 686-705 52-71 (334)
429 4tmk_A Protein (thymidylate ki 81.4 0.6 2.1E-05 50.3 2.4 20 685-704 3-22 (213)
430 4edh_A DTMP kinase, thymidylat 81.3 0.55 1.9E-05 50.5 2.1 22 684-705 5-26 (213)
431 4a15_A XPD helicase, ATP-depen 81.2 2.2 7.4E-05 53.3 7.7 55 675-732 12-68 (620)
432 2yyz_A Sugar ABC transporter, 81.2 0.46 1.6E-05 55.3 1.5 24 682-705 26-49 (359)
433 2it1_A 362AA long hypothetical 81.1 0.46 1.6E-05 55.4 1.5 24 682-705 26-49 (362)
434 2pjz_A Hypothetical protein ST 81.1 0.45 1.5E-05 52.9 1.4 23 682-705 28-50 (263)
435 2iyv_A Shikimate kinase, SK; t 81.0 0.83 2.8E-05 47.1 3.3 20 686-705 3-22 (184)
436 1tf7_A KAIC; homohexamer, hexa 81.0 0.42 1.4E-05 58.5 1.2 32 676-707 29-61 (525)
437 4hlc_A DTMP kinase, thymidylat 80.9 0.58 2E-05 50.0 2.1 19 686-704 3-21 (205)
438 1uf9_A TT1252 protein; P-loop, 80.8 0.57 2E-05 48.9 2.0 24 686-710 9-32 (203)
439 1ak2_A Adenylate kinase isoenz 80.7 0.9 3.1E-05 49.0 3.6 26 685-710 16-41 (233)
440 3v9p_A DTMP kinase, thymidylat 80.6 0.59 2E-05 50.9 2.0 23 683-705 23-45 (227)
441 3auy_A DNA double-strand break 80.6 0.54 1.9E-05 54.8 1.9 21 685-705 25-45 (371)
442 1nlf_A Regulatory protein REPA 80.6 0.6 2E-05 52.0 2.1 28 680-707 25-52 (279)
443 3tui_C Methionine import ATP-b 80.5 0.5 1.7E-05 55.1 1.5 24 682-705 51-74 (366)
444 2dhr_A FTSH; AAA+ protein, hex 80.5 2.2 7.5E-05 51.8 7.2 20 687-706 66-85 (499)
445 3gd7_A Fusion complex of cysti 80.4 0.49 1.7E-05 55.7 1.4 24 682-705 44-67 (390)
446 3cf2_A TER ATPase, transitiona 80.4 0.49 1.7E-05 60.7 1.5 21 686-706 239-259 (806)
447 1via_A Shikimate kinase; struc 80.3 0.6 2.1E-05 47.9 1.9 19 687-705 6-24 (175)
448 1g29_1 MALK, maltose transport 80.3 0.51 1.7E-05 55.2 1.5 24 682-705 26-49 (372)
449 1v43_A Sugar-binding transport 80.2 0.52 1.8E-05 55.1 1.5 24 682-705 34-57 (372)
450 3a4m_A L-seryl-tRNA(SEC) kinas 80.0 0.96 3.3E-05 49.9 3.5 22 685-706 4-25 (260)
451 1pui_A ENGB, probable GTP-bind 79.9 0.47 1.6E-05 49.7 1.0 23 683-705 24-46 (210)
452 3d3q_A TRNA delta(2)-isopenten 79.8 0.65 2.2E-05 53.6 2.1 17 686-702 8-24 (340)
453 3lda_A DNA repair protein RAD5 79.7 0.91 3.1E-05 53.6 3.4 35 675-709 167-202 (400)
454 3qf7_A RAD50; ABC-ATPase, ATPa 79.6 0.68 2.3E-05 53.9 2.3 19 686-704 24-42 (365)
455 3d31_A Sulfate/molybdate ABC t 79.6 0.43 1.5E-05 55.4 0.5 24 682-705 23-46 (348)
456 4e22_A Cytidylate kinase; P-lo 79.6 1.1 3.8E-05 49.2 3.9 29 683-711 25-53 (252)
457 3tmk_A Thymidylate kinase; pho 79.3 0.76 2.6E-05 49.6 2.4 22 684-705 4-25 (216)
458 1sxj_D Activator 1 41 kDa subu 79.3 0.86 2.9E-05 51.9 2.9 32 675-706 46-79 (353)
459 2qmh_A HPR kinase/phosphorylas 79.1 0.9 3.1E-05 48.5 2.8 23 684-706 33-55 (205)
460 3lv8_A DTMP kinase, thymidylat 79.1 1.4 4.9E-05 48.1 4.5 22 684-705 26-47 (236)
461 2hf9_A Probable hydrogenase ni 78.8 1.6 5.4E-05 46.4 4.7 25 685-709 38-62 (226)
462 3cmu_A Protein RECA, recombina 78.6 1.1 3.7E-05 62.5 4.1 64 676-745 1070-1135(2050)
463 1p5z_B DCK, deoxycytidine kina 78.6 0.75 2.5E-05 50.7 2.1 20 684-703 23-42 (263)
464 2j37_W Signal recognition part 78.3 1.9 6.4E-05 52.5 5.6 56 686-741 102-157 (504)
465 3sop_A Neuronal-specific septi 78.2 0.79 2.7E-05 51.1 2.1 20 687-706 4-23 (270)
466 1e69_A Chromosome segregation 78.0 0.82 2.8E-05 52.2 2.2 21 685-705 24-44 (322)
467 3qks_A DNA double-strand break 77.9 0.87 3E-05 48.4 2.3 21 685-705 23-43 (203)
468 4a82_A Cystic fibrosis transme 77.9 0.66 2.3E-05 57.5 1.5 22 682-703 364-385 (578)
469 1oxx_K GLCV, glucose, ABC tran 77.7 0.44 1.5E-05 55.4 -0.1 24 682-705 28-51 (353)
470 3qf4_B Uncharacterized ABC tra 77.5 0.69 2.4E-05 57.5 1.6 24 682-705 378-401 (598)
471 2fna_A Conserved hypothetical 77.2 1.3 4.5E-05 50.1 3.7 25 686-710 31-55 (357)
472 2grj_A Dephospho-COA kinase; T 77.1 0.73 2.5E-05 48.7 1.4 25 684-709 11-35 (192)
473 3crm_A TRNA delta(2)-isopenten 77.1 1.3 4.3E-05 50.8 3.4 17 686-702 6-22 (323)
474 3nwj_A ATSK2; P loop, shikimat 76.8 1.4 4.8E-05 48.6 3.6 22 685-706 48-69 (250)
475 1v5w_A DMC1, meiotic recombina 76.7 1.5 5E-05 50.6 3.9 37 675-711 111-148 (343)
476 1sq5_A Pantothenate kinase; P- 76.6 0.86 3E-05 51.7 1.9 23 683-705 78-100 (308)
477 3hws_A ATP-dependent CLP prote 76.6 1.5 5.1E-05 50.7 3.9 21 684-704 50-70 (363)
478 1ixz_A ATP-dependent metallopr 76.6 0.92 3.2E-05 49.4 2.1 22 687-708 51-72 (254)
479 3b5x_A Lipid A export ATP-bind 76.6 0.8 2.7E-05 56.8 1.7 24 682-705 366-389 (582)
480 1ltq_A Polynucleotide kinase; 76.4 1.1 3.9E-05 50.0 2.8 21 686-706 3-23 (301)
481 3t1o_A Gliding protein MGLA; G 76.4 1.2 4.2E-05 45.5 2.9 21 687-708 16-36 (198)
482 2ocp_A DGK, deoxyguanosine kin 76.4 0.9 3.1E-05 49.3 1.9 20 686-705 3-22 (241)
483 2yv5_A YJEQ protein; hydrolase 76.3 1.3 4.3E-05 50.2 3.2 23 684-706 164-186 (302)
484 3qf4_A ABC transporter, ATP-bi 76.3 0.77 2.6E-05 57.0 1.5 23 682-704 366-388 (587)
485 3eph_A TRNA isopentenyltransfe 76.2 0.94 3.2E-05 53.4 2.1 22 888-909 150-171 (409)
486 3b60_A Lipid A export ATP-bind 76.2 0.76 2.6E-05 57.0 1.4 24 682-705 366-389 (582)
487 2qag_B Septin-6, protein NEDD5 76.0 0.82 2.8E-05 54.4 1.5 26 681-706 36-63 (427)
488 1svm_A Large T antigen; AAA+ f 75.9 0.99 3.4E-05 52.9 2.2 25 682-706 166-190 (377)
489 2r6a_A DNAB helicase, replicat 75.7 1.1 3.7E-05 53.8 2.4 35 675-709 193-227 (454)
490 2rcn_A Probable GTPase ENGC; Y 75.6 1.4 4.9E-05 51.1 3.4 24 683-706 213-236 (358)
491 2dyk_A GTP-binding protein; GT 75.6 1.3 4.5E-05 43.7 2.8 22 687-708 3-24 (161)
492 3qkt_A DNA double-strand break 75.4 0.99 3.4E-05 51.9 2.0 20 685-704 23-42 (339)
493 2yl4_A ATP-binding cassette SU 75.3 0.81 2.8E-05 56.9 1.3 24 682-705 367-390 (595)
494 1z2a_A RAS-related protein RAB 75.3 1.4 4.7E-05 43.9 2.8 21 687-707 7-27 (168)
495 2ce2_X GTPase HRAS; signaling 75.0 1.3 4.6E-05 43.6 2.6 22 687-708 5-26 (166)
496 1uj2_A Uridine-cytidine kinase 74.9 1.1 3.8E-05 49.0 2.1 17 686-702 23-39 (252)
497 2q6t_A DNAB replication FORK h 74.8 1.3 4.5E-05 52.9 2.9 35 675-709 190-224 (444)
498 2p5t_B PEZT; postsegregational 74.8 1.3 4.3E-05 48.7 2.5 23 685-707 32-54 (253)
499 1e9r_A Conjugal transfer prote 74.7 1.2 4.2E-05 52.7 2.7 41 684-726 52-92 (437)
500 3pqc_A Probable GTP-binding pr 74.4 1.4 4.7E-05 45.2 2.6 23 686-708 24-46 (195)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.6e-83 Score=822.79 Aligned_cols=474 Identities=48% Similarity=0.832 Sum_probs=444.2
Q ss_pred hhhhHHHHhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCC-CcEEEEecccHHHHHHHHHHHH
Q psy1907 658 KKLNIEETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKD-KMKIGCTQPRRVAAMSVSARVA 736 (1320)
Q Consensus 658 ~~~~i~~~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~-~~~I~~tQPRRvAA~svA~rva 736 (1320)
+..++.+.|..||++.++++|..++..+++++|+|+||||||||+|+++++.++..+ +.+|+|++|||.+|.++|++++
T Consensus 82 ~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~ 161 (773)
T 2xau_A 82 KYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVA 161 (773)
T ss_dssp HHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHH
Confidence 455677788899999999999999999999999999999999999999998776543 5579999999999999999999
Q ss_pred HHhCCCCCCeeeEEeecCccCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEcccccc---------------------
Q psy1907 737 EEMGVKLGCEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPK--------------------- 795 (1320)
Q Consensus 737 ~e~~~~lG~~VGY~irfe~~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER--------------------- 795 (1320)
+++|..+|..|||++++++..+.++.|+|+|.|+|+|.++.++.|.++++|||||+|+|
T Consensus 162 ~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~ 241 (773)
T 2xau_A 162 EEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDL 241 (773)
T ss_dssp HHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTC
T ss_pred HHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999997
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 242 ~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~ 321 (773)
T 2xau_A 242 KIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVR 321 (773)
T ss_dssp EEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHH
T ss_pred eEEEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHH
Confidence
Q ss_pred -------------------------------------------------------------------eEEEcCCccceee
Q psy1907 796 -------------------------------------------------------------------VYVIDPGFCKQNN 808 (1320)
Q Consensus 796 -------------------------------------------------------------------~~ViD~G~~k~~~ 808 (1320)
.+|||+|+.|.+.
T Consensus 322 ~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~ 401 (773)
T 2xau_A 322 KISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKV 401 (773)
T ss_dssp HHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEE
T ss_pred HHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCcccee
Confidence 5899999999999
Q ss_pred ccCCCCcceeEEEEecHhhHHHHhcccCCccCCeEEEecchHHhhhhccCCCchhhhccChHHHHHHHHHcCCCCccccc
Q psy1907 809 FNSRTGMESLTVVPISKASANQRAGRAGRVAAGKCFRLYTAWAYKHELEDNTVPEIQRINLGNAVLMLKALGINDLIHFD 888 (1320)
Q Consensus 809 y~~~~~~~~L~~~~iSkasa~QR~GRAGR~~pG~cyrLyt~~~~~~~l~~~~~PEI~R~~L~~~vL~lk~lgi~d~~~f~ 888 (1320)
|||++|+++|.+.|+|++++.||+|||||..||+||+||++..|...|++++.|||+|++|.+++|+++++|++++..|+
T Consensus 402 yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~f~ 481 (773)
T 2xau_A 402 YNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFD 481 (773)
T ss_dssp EETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGGCC
T ss_pred eccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccccCCCccccCcHHHHHHHHHHcCCCChhhcc
Confidence 99999999999999999999999999999999999999999999777999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHccccCCCCCccccccccccccCChhhHHHHHhhhhccchHHHHHHHhhcccCCccccCChh
Q psy1907 889 FLDPPPHETLVLALEQLYALGALNHHGDLTKLGRRMAEFPLDPMMGKMLLASEKYKCVEEIVTIASMLSVNGAIFYRPKD 968 (1320)
Q Consensus 889 fldpP~~~~l~~Ale~L~~LgAld~~g~LT~lG~~ma~lPldP~laK~Ll~s~~~~c~~e~ltIaA~Lsv~~~~f~~p~~ 968 (1320)
|+|||+.+++..|++.|+.+||||++|+||++|+.|+.||+||++||||+.|..++|++++++|+||||+++ +|++|.+
T Consensus 482 ~~~~p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~-~f~~~~~ 560 (773)
T 2xau_A 482 FMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPN-VFIRPTK 560 (773)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCC-CBCCCTT
T ss_pred ccCCCcHHHHHHHHHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhcccCC-cccCChH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999974 8999999
Q ss_pred HHHHHHHHHhhhcccCCCHHHHHHHHHHHhhcc---cc-hhhHHhhccchhhHHHHHHHHHHHHHHHHhhhccccCCC--
Q psy1907 969 KIIHADTARKNFFMLGGDHLVLLNIYNQWADAD---FS-TQWCYENFIQHRSMKRARDVREQLIGLVQRVEMELVSNP-- 1042 (1320)
Q Consensus 969 ~~~~a~~~r~~f~~~~gDhltllnvy~~w~~~~---~~-~~wC~~n~l~~~~l~~a~~ir~QL~~~l~r~~~~~~s~~-- 1042 (1320)
+..+++.+++.|..++|||++++|+|++|...+ .+ .+||.+|||++++|+++.++|.||.++|.+.+++..+++
T Consensus 561 ~~~~~~~~~~~f~~~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~~ 640 (773)
T 2xau_A 561 DKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYE 640 (773)
T ss_dssp CHHHHHHHHHTTCCTTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTT
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCC
Confidence 999999999999999999999999999997655 44 789999999999999999999999999999888765543
Q ss_pred --ccchHHHHHHHhccccchhhcccCCC-cccccCCceEEECCCCCCCccCCcccchhhhhcchHhHhhheeeeChhchH
Q psy1907 1043 --TETVNIRKAITAGYFYHIAKLSKSGS-YKTAKHNQTVMIHPNSSLFEELPRWVLYHELVFTTKEFMRQVTEIESKWLL 1119 (1320)
Q Consensus 1043 --~~~~~i~kal~aG~~~nvA~l~~~g~-y~t~~~~~~v~iHPsS~l~~~~p~~vvy~elv~Tsk~y~r~vt~I~~~wLl 1119 (1320)
.+...|++||++|||+|+|++.++|. |.++.+|+.|+|||+|+|. ..|+||||+|++.|++.|||.|++|+|+||.
T Consensus 641 ~~~~~~~i~~~l~~g~~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~-~~~~~~v~~e~~~t~~~~~~~~~~i~~~~l~ 719 (773)
T 2xau_A 641 SPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLG-HDAEWVIYNEFVLTSKNYIRTVTSVRPEWLI 719 (773)
T ss_dssp STTHHHHHHHHHHHHHTTSEEEECCC--CEEETTTCCEEEECTTCCCC-TTCSEEEEEEEEESSSEEEEEEEECCHHHHH
T ss_pred chhhHHHHHHHHHHhChHhheeeccCCCcceEeeCCCEEEECCCcccC-CCCCEEEEEEeeccchhheeecccCCHHHHH
Confidence 23477999999999999999888776 9999999999999999994 4589999999999999999999999999999
Q ss_pred hhcCCCcccccccc
Q psy1907 1120 EVAPHYYKPRELED 1133 (1320)
Q Consensus 1120 e~ap~~~~~k~~~~ 1133 (1320)
+++|+||...+++.
T Consensus 720 ~~~~~~~~~~~~~~ 733 (773)
T 2xau_A 720 EIAPAYYDLSNFQK 733 (773)
T ss_dssp HHCTTTSCGGGCCS
T ss_pred HHHHHheeeccCCc
Confidence 99999998777653
No 2
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.9e-53 Score=473.72 Aligned_cols=250 Identities=50% Similarity=0.906 Sum_probs=229.8
Q ss_pred ccccC-CCCCChHHHHHHHHHHHHccccCCCCCccccccccccccCChhhHHHHHhhhhccchHHHHHHHhhcccCCccc
Q psy1907 885 IHFDF-LDPPPHETLVLALEQLYALGALNHHGDLTKLGRRMAEFPLDPMMGKMLLASEKYKCVEEIVTIASMLSVNGAIF 963 (1320)
Q Consensus 885 ~~f~f-ldpP~~~~l~~Ale~L~~LgAld~~g~LT~lG~~ma~lPldP~laK~Ll~s~~~~c~~e~ltIaA~Lsv~~~~f 963 (1320)
..|+| +||||.+++..|++.|+.|||||++|+||++|+.|++||+||++||||+.|..++|++++++|+||||+++ +|
T Consensus 6 ~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~-~f 84 (270)
T 3i4u_A 6 PEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN-VF 84 (270)
T ss_dssp --------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC-CB
T ss_pred hccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCCc-cc
Confidence 56789 99999999999999999999999999999999999999999999999999999999999999999999986 89
Q ss_pred cCChhHHHHHHHHHhhhcccCCCHHHHHHHHHHHhhcccchhhHHhhccchhhHHHHHHHHHHHHHHHHhhhccccCCCc
Q psy1907 964 YRPKDKIIHADTARKNFFMLGGDHLVLLNIYNQWADADFSTQWCYENFIQHRSMKRARDVREQLIGLVQRVEMELVSNPT 1043 (1320)
Q Consensus 964 ~~p~~~~~~a~~~r~~f~~~~gDhltllnvy~~w~~~~~~~~wC~~n~l~~~~l~~a~~ir~QL~~~l~r~~~~~~s~~~ 1043 (1320)
++|.+++.+++.+|++|..++|||++++|+|++|.+.+.+.+||.+|||++++|+++.++|.||.+++++.+++..+++.
T Consensus 85 ~~p~~~~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~s~~~ 164 (270)
T 3i4u_A 85 YRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGK 164 (270)
T ss_dssp CCCGGGHHHHHHHHHTTCBTTBHHHHHHHHHHHHHHTTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCTT
T ss_pred cCCchhHHHHHHHHHHccCCCChHHHHHHHHHHHHHcCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc
Confidence 99999999999999999999999999999999999988888999999999999999999999999999999988777777
Q ss_pred cchHHHHHHHhccccchhhcccCCCcccccCCceEEECCCCCCCccCCcccchhhhhcchHhHhhheeeeChhchHhhcC
Q psy1907 1044 ETVNIRKAITAGYFYHIAKLSKSGSYKTAKHNQTVMIHPNSSLFEELPRWVLYHELVFTTKEFMRQVTEIESKWLLEVAP 1123 (1320)
Q Consensus 1044 ~~~~i~kal~aG~~~nvA~l~~~g~y~t~~~~~~v~iHPsS~l~~~~p~~vvy~elv~Tsk~y~r~vt~I~~~wLle~ap 1123 (1320)
+.+.|++||++|||+|+|+++++|.|+++.+|+.|+|||+|+|++..|+||||+|++.|+|.|||+|+.|+|+||.+++|
T Consensus 165 ~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~~~~~v~iHPsS~L~~~~p~wvvy~Elv~Tsk~y~r~vt~I~p~wL~~~ap 244 (270)
T 3i4u_A 165 STVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAP 244 (270)
T ss_dssp CTHHHHHHHHHHHGGGEEEECSSSSEEETTTCCEEEECTTSTTTTSCCSEEEEEEEEESSSEEEEEEEECCHHHHHHHCT
T ss_pred hHHHHHHHHHHHhHHHHheeCCCCceEEccCCCEEEECchhhhcCCCCCEEEEEehhhhhHhHHHhccccCHHHHHHHhH
Confidence 78899999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccc
Q psy1907 1124 HYYKPRELEDST 1135 (1320)
Q Consensus 1124 ~~~~~k~~~~~~ 1135 (1320)
+||+.++.+...
T Consensus 245 ~~~~~~~~~~~~ 256 (270)
T 3i4u_A 245 AFFKVLEVDLQG 256 (270)
T ss_dssp TTEECC------
T ss_pred HHhccccccccc
Confidence 999998876543
No 3
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=6.6e-49 Score=502.96 Aligned_cols=327 Identities=44% Similarity=0.695 Sum_probs=294.8
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhcCCCCEEEeCCc
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFFDDAPVFRIPGR 80 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~~~~vi~i~g~ 80 (1320)
+|||+|++.+..++.++++++|||||||+|++++|+++++++.+...+++.|+|+||||++.+.+++||++++++.++|+
T Consensus 191 ~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr 270 (773)
T 2xau_A 191 MTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGR 270 (773)
T ss_dssp EEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCCEEECCCC
T ss_pred ECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCCCcccccCc
Confidence 69999999999999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred ccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhh--cCCCCCeEEEEecCCCCH
Q psy1907 81 RFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRL--GSKIKELIILPVYSNLPT 158 (1320)
Q Consensus 81 ~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l--~~~~~~~~v~~LH~~l~~ 158 (1320)
.+||+++|...+..++++..+..+..++...++|++|||++|+++|+.++..|.+.+..+ .....++.+.++||+|++
T Consensus 271 ~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~ 350 (773)
T 2xau_A 271 TYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPP 350 (773)
T ss_dssp CCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCH
T ss_pred ccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCH
Confidence 999999999999999999999999999888778999999999999999999998755433 223357899999999999
Q ss_pred HHHHHHcCCCC-----CCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCC
Q psy1907 159 DMQTKIFLPTP-----PNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITG 233 (1320)
Q Consensus 159 ~~r~~i~~~~~-----~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR 233 (1320)
++|.++++.|+ +|.++||||||+||+|||||+|++|||+|+++.+.||++.|++.|.+.|+|+++|.||+|||||
T Consensus 351 ~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR 430 (773)
T 2xau_A 351 HQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGR 430 (773)
T ss_dssp HHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGS
T ss_pred HHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCC
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEecCHHHH-hhcccccCCccccCCcchhhhhhccccccccccccccccccceecccccccccchhhhhh
Q psy1907 234 FNPLSDFRGCAHVLGEEVL-RGCAHVLGEEVLRPEVSQPFRSFGYLGVMQDCRYIGTYLVGFIWHWKNHYIQDQTLVTFM 312 (1320)
Q Consensus 234 ~g~g~~fg~~~~L~~~~~~-~~l~~~~~pei~~~~l~~~~L~~~~l~~~~~~~~~~~~~~~~il~~~~l~~~d~~~f~~~ 312 (1320)
.++| .||+||+++++ ..+.+...|||++.+|...+|.++. +++.|+..|.|+
T Consensus 431 ~~~G----~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~-----------------------~gi~~~~~f~~~ 483 (773)
T 2xau_A 431 TRPG----KCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKK-----------------------LGIDDLVHFDFM 483 (773)
T ss_dssp SSSE----EEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHH-----------------------TTCCCGGGCCCS
T ss_pred CCCC----EEEEEecHHHhcccccccCCCccccCcHHHHHHHHHH-----------------------cCCCChhhcccc
Confidence 9776 89999999999 6788899999999888766555544 455667778899
Q ss_pred cCCChhhhhhhcc------------ccccccccccccccCchhhhhhc-ccccch
Q psy1907 313 LTHLPTTYIKRKS------------SEYKVGNGEDSFCVSPLYNLTIQ-SSSFQS 354 (1320)
Q Consensus 313 ~~p~~~~~~~~~~------------~L~~lG~~~~~~~v~p~~~~~l~-~~~~~~ 354 (1320)
.+|++..+.++++ .||.||+.|+.+|++|.+|++|+ +..|.|
T Consensus 484 ~~p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c 538 (773)
T 2xau_A 484 DPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQC 538 (773)
T ss_dssp SCCCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTC
T ss_pred CCCcHHHHHHHHHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhcccCc
Confidence 9998887554444 45778999999999999999966 566666
No 4
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=374.76 Aligned_cols=241 Identities=35% Similarity=0.686 Sum_probs=196.0
Q ss_pred ccchHHHHHHHhccccchhhcccCCCcccccCCceEEECCCCCCCccCCcccchhhhhcchHhHhhheeeeChhchHhhc
Q psy1907 1043 TETVNIRKAITAGYFYHIAKLSKSGSYKTAKHNQTVMIHPNSSLFEELPRWVLYHELVFTTKEFMRQVTEIESKWLLEVA 1122 (1320)
Q Consensus 1043 ~~~~~i~kal~aG~~~nvA~l~~~g~y~t~~~~~~v~iHPsS~l~~~~p~~vvy~elv~Tsk~y~r~vt~I~~~wLle~a 1122 (1320)
++...+..|+.. ...++.++.+|..+ ..|+.+.-.|-.+-++ +.+++.....+..+ ++.|.+ ++++.
T Consensus 15 P~~~~l~~A~~~--L~~LgAld~~g~lT--~lG~~ma~lPl~P~la---kmLl~a~~~~c~~~----~l~iaA--~Ls~~ 81 (270)
T 3i4u_A 15 SPMETLITAMEQ--LYTLGALDDEGLLT--RLGRRMAEFPLEPMLC---KMLIMSVHLGCSEE----MLTIVS--MLSVQ 81 (270)
T ss_dssp CHHHHHHHHHHH--HHHHTSBCTTSCBC--HHHHHHTTSCSCHHHH---HHHHHHHHTTCHHH----HHHHHH--HHTSS
T ss_pred cCHHHHHHHHHH--HHHcCCcCCCCCcc--HHHHHHHhCCCCHHHH---HHHHHhhhcCCHHH----HHHHHH--HHCCC
Confidence 445667777643 35566677777533 4456555455443333 46777666666554 666666 77877
Q ss_pred CCCcccccccccccccCccccccccccccCCchhhHHHHHHhhhcCCChhhHhhhccChhhHHHHHHHHHHHHHHHHHhc
Q psy1907 1123 PHYYKPRELEDSTNKKMPKTLGKSRAELGGDHLVLLNIYNQWADADFSTQWCYENFIQHRSMKRARDVREQLIGLVQRVE 1202 (1320)
Q Consensus 1123 p~~~~~k~~~~~~~kk~~~~~~~~~~~leGdhltllnvy~~~~~~~~s~~wC~enfL~~r~l~~a~~ir~QL~~il~~~~ 1202 (1320)
..|+++.+.++.+ +.+++.+.+.+|||+|+||+|++|++++.+.+||++||||+++|++|+++|+||.++|++++
T Consensus 82 ~~f~~p~~~~~~a-----~~~~~~f~~~~sD~ltlLn~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~ 156 (270)
T 3i4u_A 82 NVFYRPKDKQALA-----DQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHK 156 (270)
T ss_dssp CCBCCCGGGHHHH-----HHHHHTTCBTTBHHHHHHHHHHHHHHTTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCchhHHHH-----HHHHHHccCCCChHHHHHHHHHHHHHcCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 7788776543322 22334567789999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcchHHHHHHHHhhhhhhceeecCCCCceeeecCcEEEEcCCCccccCCCCeEEEEEEEeecccchhhhcccch
Q psy1907 1203 MELVSNPTETVNIRKAITAGYFYHIAKLSKSGSYKTAKHNQTVMIHPNSSLFEELPRWVLYHELVFTTKEFMRQVTEIES 1282 (1320)
Q Consensus 1203 l~~~s~~~~~~~irkal~sG~f~n~A~~~~~~~Y~t~~~~~~v~ihPsS~l~~~~p~wvvy~elv~Tsk~y~r~vt~I~p 1282 (1320)
+++++++.+.+.||+|||+|||+|||+++++|.|+|+.+|+.|+|||||+||+++|+||||+|+|.|+|+|||+||.|+|
T Consensus 157 ~~~~s~~~~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~~~~~v~iHPsS~L~~~~p~wvvy~Elv~Tsk~y~r~vt~I~p 236 (270)
T 3i4u_A 157 LDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDP 236 (270)
T ss_dssp CCCCCCTTCTHHHHHHHHHHHGGGEEEECSSSSEEETTTCCEEEECTTSTTTTSCCSEEEEEEEEESSSEEEEEEEECCH
T ss_pred CCcCCCcchHHHHHHHHHHHhHHHHheeCCCCceEEccCCCEEEECchhhhcCCCCCEEEEEehhhhhHhHHHhccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhcCCcccccccCCC
Q psy1907 1283 KWLLEVAPHYYKPRELEDS 1301 (1320)
Q Consensus 1283 ~Wl~e~ap~~~~~~~~~~~ 1301 (1320)
+||.++|||||+.++++.-
T Consensus 237 ~wL~~~ap~~~~~~~~~~~ 255 (270)
T 3i4u_A 237 RWLVEFAPAFFKVLEVDLQ 255 (270)
T ss_dssp HHHHHHCTTTEECC-----
T ss_pred HHHHHHhHHHhcccccccc
Confidence 9999999999999988753
No 5
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.1e-35 Score=400.93 Aligned_cols=241 Identities=14% Similarity=0.105 Sum_probs=170.5
Q ss_pred CCHHHHHHHHcCCC----CCCCccEEEEeCCC----ccCcCcchHHHHHH-HHhhcCCCCcEEEEecCc-CHHHHHhhcC
Q psy1907 1 MTDGTLHREFLSEP----DLASYSVMIIDEAH----ERTLHTDILFGLVK-DIVRFRSDLKLLISSATL-DAQKFSEFFD 70 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~----~Ls~~s~iVLDEaH----eR~l~td~ll~llk-~l~~~r~~~qlIl~SATl-~~~~f~~~f~ 70 (1320)
+||+.+ +.+++.. .++++++|||||+| +|+...+.++.-++ .+....++.|+|++|||+ |.+.+++|++
T Consensus 187 tTpEkl-d~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~ 265 (1724)
T 4f92_B 187 CTPEKW-DIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLR 265 (1724)
T ss_dssp ECHHHH-HHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTT
T ss_pred ECHHHH-HHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhC
Confidence 699995 6665433 37999999999999 44433333333222 223456789999999999 8899999997
Q ss_pred CCC---EEEeCCcc--cceeEEEEcCCccchH---HHHHHHHHHHH-hhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhc
Q psy1907 71 DAP---VFRIPGRR--FPVDIYYTKAPEADYI---DACVVSILQIH-ATQPLGDILVFLTGQEEIETCNEILQDRVRRLG 141 (1320)
Q Consensus 71 ~~~---vi~i~g~~--~pV~~~y~~~~~~~~l---~~~i~~v~~i~-~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~ 141 (1320)
..+ +..+.... .|.+.++...+..... ...-..+.... .....+++|||++|+.+++.++..|.+.+....
T Consensus 266 ~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~ 345 (1724)
T 4f92_B 266 VDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKD 345 (1724)
T ss_dssp CCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTT
T ss_pred CCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 532 34444443 3444444333222221 11112222222 223356899999999999999999987543211
Q ss_pred CC----------------------------CCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccE
Q psy1907 142 SK----------------------------IKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIY 193 (1320)
Q Consensus 142 ~~----------------------------~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~ 193 (1320)
.. .-...|..+||||++++|..+++.|+.|..+|||||+++|.|||+|.+++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~v 425 (1724)
T 4f92_B 346 TLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTV 425 (1724)
T ss_dssp STTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEE
T ss_pred chhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceE
Confidence 00 01123788999999999999999999999999999999999999999999
Q ss_pred EEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHH
Q psy1907 194 VIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEV 251 (1320)
Q Consensus 194 VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~ 251 (1320)
||.. ...|++..| ...|+|..+|.||+|||||.|-+ ..|.++.+.+..+
T Consensus 426 VI~~----~~~~~~~~~----~~~~ls~~~~~Qm~GRAGR~g~d-~~G~~ii~~~~~~ 474 (1724)
T 4f92_B 426 IIKG----TQVYSPEKG----RWTELGALDILQMLGRAGRPQYD-TKGEGILITSHGE 474 (1724)
T ss_dssp EEEC----CEEEETTTT----EEEECCHHHHHHHHTTBSCTTTC-SCEEEEEEEESTT
T ss_pred EEeC----CEEecCcCC----CcccCCHHHHHHhhhhccCCCCC-CccEEEEEecchh
Confidence 9964 346888776 35689999999999999999876 4578888877654
No 6
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.4e-33 Score=357.14 Aligned_cols=357 Identities=17% Similarity=0.174 Sum_probs=254.2
Q ss_pred CChhhHHHHHHH-HHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHH--HHHhCCCCCCe
Q psy1907 670 PIYPFKQDLIDA-VRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARV--AEEMGVKLGCE 746 (1320)
Q Consensus 670 Pi~~~~~~il~~-i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rv--a~e~~~~lG~~ 746 (1320)
..+++..+.+.+ +.++++++|+|||||||||+.|+++++.... .+++|+|++|+|..|..+++++ ..++|.++|..
T Consensus 30 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~ 108 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-NGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMT 108 (715)
T ss_dssp BCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEEC
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-CCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEE
Confidence 346777788887 8899999999999999999999999876432 2458999999999999999999 45678888999
Q ss_pred eeEEeecCccCCCCccEEEEccHHHHHHHhcCCC-CCCccEEEEcccccc------------------------------
Q psy1907 747 VGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPD-LASYSVMIIDEAHPK------------------------------ 795 (1320)
Q Consensus 747 VGY~irfe~~~s~~T~i~y~TdG~Llrel~~dp~-L~~ys~iIiDE~HER------------------------------ 795 (1320)
+||..++++..+ ++.|+|||.|+|++.+..++. +.++++|||||||+.
T Consensus 109 ~G~~~~~~~~~~-~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~ii~lSATl~n 187 (715)
T 2va8_A 109 SGDYDTDDAWLK-NYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNLLALSATISN 187 (715)
T ss_dssp CSCSSSCCGGGG-GCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEEEEEESCCTT
T ss_pred eCCCCCchhhcC-CCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcccCcEEEEcCCCCC
Confidence 999988887654 899999999999999999996 999999999999984
Q ss_pred -----------------------eEEEcCC---------cc-------------------------ceeeccC-------
Q psy1907 796 -----------------------VYVIDPG---------FC-------------------------KQNNFNS------- 811 (1320)
Q Consensus 796 -----------------------~~ViD~G---------~~-------------------------k~~~y~~------- 811 (1320)
..++..+ +. +.-+|-+
T Consensus 188 ~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~ 267 (715)
T 2va8_A 188 YKQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAES 267 (715)
T ss_dssp HHHHHHHHTCEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHH
T ss_pred HHHHHHHhCCCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHhcCCCEEEEECCHHHHHH
Confidence 0010000 00 0000000
Q ss_pred ---------------------------------------------------C----------------------------
Q psy1907 812 ---------------------------------------------------R---------------------------- 812 (1320)
Q Consensus 812 ---------------------------------------------------~---------------------------- 812 (1320)
.
T Consensus 268 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~ 347 (715)
T 2va8_A 268 TALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPT 347 (715)
T ss_dssp HHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGG
T ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChH
Confidence 0
Q ss_pred --CCcc----eeEE--------------EEecHhhHHHHhcccCCcc---CCeEEEecchHH-hhhhcc--CCCchhhhc
Q psy1907 813 --TGME----SLTV--------------VPISKASANQRAGRAGRVA---AGKCFRLYTAWA-YKHELE--DNTVPEIQR 866 (1320)
Q Consensus 813 --~~~~----~L~~--------------~~iSkasa~QR~GRAGR~~---pG~cyrLyt~~~-~~~~l~--~~~~PEI~R 866 (1320)
.|++ ..++ .|+|.+++.||+|||||.+ +|+||++|++.. +...++ -...||+.+
T Consensus 348 l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~ 427 (715)
T 2va8_A 348 LAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIE 427 (715)
T ss_dssp GGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCC
T ss_pred HhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCce
Confidence 0110 1112 5889999999999999999 999999998765 222222 146799999
Q ss_pred cChHH------HHHHHHHcCC----CCcccc---cCCC-CCChHHHHHHHHHHHHccccCCCC---CccccccccccccC
Q psy1907 867 INLGN------AVLMLKALGI----NDLIHF---DFLD-PPPHETLVLALEQLYALGALNHHG---DLTKLGRRMAEFPL 929 (1320)
Q Consensus 867 ~~L~~------~vL~lk~lgi----~d~~~f---~fld-pP~~~~l~~Ale~L~~LgAld~~g---~LT~lG~~ma~lPl 929 (1320)
++|.+ .+|.+.++|. .|+..| .|+. +|+...+..|++.|..+|+|+.++ .+|++|+.|+.+|+
T Consensus 428 s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~ 507 (715)
T 2va8_A 428 SKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYI 507 (715)
T ss_dssp CSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTC
T ss_pred ecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHHHHHHHHHHHCcCEeecCCeEeeChHHHHHHHHcC
Confidence 88765 6778888873 244333 4554 556678999999999999998764 89999999999999
Q ss_pred ChhhHHHHHhhhhc---cchHHHHHHHhhcccCCccccCChhHHHHHHHHHh---hh-c-ccCC--------CHHHHHHH
Q psy1907 930 DPMMGKMLLASEKY---KCVEEIVTIASMLSVNGAIFYRPKDKIIHADTARK---NF-F-MLGG--------DHLVLLNI 993 (1320)
Q Consensus 930 dP~laK~Ll~s~~~---~c~~e~ltIaA~Lsv~~~~f~~p~~~~~~a~~~r~---~f-~-~~~g--------Dhltllnv 993 (1320)
+|..+||++.+... .|..+++.|+|+.+.-+.+|++|.++....+.... .+ . .+-. .|+-..-+
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 587 (715)
T 2va8_A 508 NPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALI 587 (715)
T ss_dssp CHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHhhhccCCCHHHHHHHhhcCcccccCccChHHHHHHHHHHHhcchhhcccccccccchhhhHHHHHHHHH
Confidence 99999999999887 79999999999887655688988776544433211 11 0 0100 12222333
Q ss_pred HHHHhhcccchhhHHhhccchhhHHHHHHHHHHHH
Q psy1907 994 YNQWADADFSTQWCYENFIQHRSMKRARDVREQLI 1028 (1320)
Q Consensus 994 y~~w~~~~~~~~wC~~n~l~~~~l~~a~~ir~QL~ 1028 (1320)
.++|.+...-..+|.+..+....|....+....|.
T Consensus 588 l~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~ 622 (715)
T 2va8_A 588 MKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLT 622 (715)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 46676655555677776665555554444333333
No 7
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.97 E-value=6.7e-31 Score=335.27 Aligned_cols=347 Identities=18% Similarity=0.196 Sum_probs=253.5
Q ss_pred ChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHH--HHHhCCCCCCeee
Q psy1907 671 IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARV--AEEMGVKLGCEVG 748 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rv--a~e~~~~lG~~VG 748 (1320)
.++++.+++.++.+++.++|+||||||||++.++++++... . +++|+|++|+|..|..+++++ ..++|.++|..+|
T Consensus 26 l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~-~-~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G 103 (702)
T 2p6r_A 26 LFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-K-GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTG 103 (702)
T ss_dssp CCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH-T-TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECS
T ss_pred CCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH-h-CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 46778889999999999999999999999999999987633 2 347999999999999999999 3346778888889
Q ss_pred EEeecCccCCCCccEEEEccHHHHHHHhcCCC-CCCccEEEEccccc-----c---------------------------
Q psy1907 749 YAIRFEDCTSERTIIKYMTDGTLHREFLSEPD-LASYSVMIIDEAHP-----K--------------------------- 795 (1320)
Q Consensus 749 Y~irfe~~~s~~T~i~y~TdG~Llrel~~dp~-L~~ys~iIiDE~HE-----R--------------------------- 795 (1320)
+..++++..+ ++.|+|||.|+|++.+..++. +.++++|||||||+ |
T Consensus 104 ~~~~~~~~~~-~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl 182 (702)
T 2p6r_A 104 DYESRDEHLG-DCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATA 182 (702)
T ss_dssp SCBCCSSCST-TCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCC
T ss_pred CCCcchhhcc-CCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCc
Confidence 8888887654 899999999999999999986 89999999999998 5
Q ss_pred -------------------------eE--------EEcCCc--------c-----------ceee---------------
Q psy1907 796 -------------------------VY--------VIDPGF--------C-----------KQNN--------------- 808 (1320)
Q Consensus 796 -------------------------~~--------ViD~G~--------~-----------k~~~--------------- 808 (1320)
.+ ..|... . +.-+
T Consensus 183 ~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L 262 (702)
T 2p6r_A 183 PNVTEIAEWLDADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKL 262 (702)
T ss_dssp TTHHHHHHHTTCEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHH
Confidence 00 011000 0 0000
Q ss_pred ---------------------------------------cc----------------------------CCCCcc----e
Q psy1907 809 ---------------------------------------FN----------------------------SRTGME----S 817 (1320)
Q Consensus 809 ---------------------------------------y~----------------------------~~~~~~----~ 817 (1320)
+. -..|++ .
T Consensus 263 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~ 342 (702)
T 2p6r_A 263 SAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARR 342 (702)
T ss_dssp HHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSE
T ss_pred HHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceE
Confidence 00 001111 1
Q ss_pred eE----------EEEecHhhHHHHhcccCCcc---CCeEEEecchHHhhhhccC--CCchhhhccChHH------HHHHH
Q psy1907 818 LT----------VVPISKASANQRAGRAGRVA---AGKCFRLYTAWAYKHELED--NTVPEIQRINLGN------AVLML 876 (1320)
Q Consensus 818 L~----------~~~iSkasa~QR~GRAGR~~---pG~cyrLyt~~~~~~~l~~--~~~PEI~R~~L~~------~vL~l 876 (1320)
.+ ..|+|.+++.||+|||||.+ +|.||++|++..+...++. ...||+.+++|.+ .+|.+
T Consensus 343 ~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~ 422 (702)
T 2p6r_A 343 VIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSI 422 (702)
T ss_dssp EEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHH
T ss_pred EEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHH
Confidence 11 35899999999999999998 9999999998875433322 4679999888765 67777
Q ss_pred HHcCCC----Ccccc---cCC----CCCChHHHHHHHHHHHHccccCCC--CCccccccccccccCChhhHHHHHhhhhc
Q psy1907 877 KALGIN----DLIHF---DFL----DPPPHETLVLALEQLYALGALNHH--GDLTKLGRRMAEFPLDPMMGKMLLASEKY 943 (1320)
Q Consensus 877 k~lgi~----d~~~f---~fl----dpP~~~~l~~Ale~L~~LgAld~~--g~LT~lG~~ma~lPldP~laK~Ll~s~~~ 943 (1320)
.++|.. |+..| .|+ ++|+.+.+..|++.|..+|+|+.+ +.+|++|+.|+.+|++|..+++++.+...
T Consensus 423 ~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~ 502 (702)
T 2p6r_A 423 ICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYIDPLTGFIFHDVLSR 502 (702)
T ss_dssp HHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTCCHHHHHHHHHHTTT
T ss_pred HHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhCCHHHHHHHHHHhhc
Confidence 778732 33322 344 378899999999999999999877 78999999999999999999999999988
Q ss_pred --cchHHHHHHHhhcccCCccccCChhHHHHHHHH-H--hhh-ccc--CC-------CHHHHHHHHHHHhhcccchhhHH
Q psy1907 944 --KCVEEIVTIASMLSVNGAIFYRPKDKIIHADTA-R--KNF-FML--GG-------DHLVLLNIYNQWADADFSTQWCY 1008 (1320)
Q Consensus 944 --~c~~e~ltIaA~Lsv~~~~f~~p~~~~~~a~~~-r--~~f-~~~--~g-------Dhltllnvy~~w~~~~~~~~wC~ 1008 (1320)
.|..+++.|+|+.+.-+.+++++.+ ..-.+.. + ..+ ..+ .. .|+-..-+.++|.+...-...|.
T Consensus 503 ~~~~~~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~ 581 (702)
T 2p6r_A 503 MELSDIGALHLICRTPDMERLTVRKTD-SWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICA 581 (702)
T ss_dssp CCCCHHHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred ccCCHHHHHHHhhCCcccccCCCCCch-HHHHHHHHhccccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHH
Confidence 8999999999988876668999887 2222211 1 122 111 11 23333344567776544455666
Q ss_pred hhccchhhHHHHH
Q psy1907 1009 ENFIQHRSMKRAR 1021 (1320)
Q Consensus 1009 ~n~l~~~~l~~a~ 1021 (1320)
+..+....++.+.
T Consensus 582 ~~~~~~gdl~~i~ 594 (702)
T 2p6r_A 582 KYGIAPGDLRRIV 594 (702)
T ss_dssp HTTCCHHHHHHHH
T ss_pred HhCCcHHhHHHHH
Confidence 6555444444333
No 8
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.97 E-value=1.3e-31 Score=341.77 Aligned_cols=311 Identities=15% Similarity=0.113 Sum_probs=227.7
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCc-----cCcCcchHHHHHHHHhhcCCCCcEEEEecCc-CHHHHHhhcCCCC
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHE-----RTLHTDILFGLVKDIVRFRSDLKLLISSATL-DAQKFSEFFDDAP 73 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHe-----R~l~td~ll~llk~l~~~r~~~qlIl~SATl-~~~~f~~~f~~~~ 73 (1320)
||||+|.+.+..++. ++++++|||||||+ |+..++.+++.++. .+++.|+|+||||+ +.+.+++||+ ++
T Consensus 120 ~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~---~~~~~~ii~lSATl~n~~~~~~~l~-~~ 195 (702)
T 2p6r_A 120 TTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRR---MNKALRVIGLSATAPNVTEIAEWLD-AD 195 (702)
T ss_dssp EEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHH---HCTTCEEEEEECCCTTHHHHHHHTT-CE
T ss_pred ECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHh---cCcCceEEEECCCcCCHHHHHHHhC-CC
Confidence 699999999998887 99999999999997 66666666665553 46789999999999 4899999996 67
Q ss_pred EEEeCCcccceeEEEEcCCccchHHH---------HHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCC
Q psy1907 74 VFRIPGRRFPVDIYYTKAPEADYIDA---------CVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKI 144 (1320)
Q Consensus 74 vi~i~g~~~pV~~~y~~~~~~~~l~~---------~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~ 144 (1320)
++..+++++|+...+...+...+.+. ....+..... +++++|||++|+++++.++..|.+.+..+....
T Consensus 196 ~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~ 273 (702)
T 2p6r_A 196 YYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENE 273 (702)
T ss_dssp EEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCS
T ss_pred cccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChH
Confidence 88889999998876644332211110 2333333332 468999999999999999999987643211000
Q ss_pred ---------------------CCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccc
Q psy1907 145 ---------------------KELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQN 203 (1320)
Q Consensus 145 ---------------------~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~ 203 (1320)
.+..+.++||+|++++|..+++.|++|.++|||||+++|+|||+|++++||++ ..
T Consensus 274 ~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~ 349 (702)
T 2p6r_A 274 GLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRS----LY 349 (702)
T ss_dssp SHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECC----SE
T ss_pred HHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcC----ce
Confidence 01247789999999999999999999999999999999999999999999986 34
Q ss_pred cccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHHHhhccc---ccCCccccCCcch------hhhh
Q psy1907 204 NFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEVLRGCAH---VLGEEVLRPEVSQ------PFRS 274 (1320)
Q Consensus 204 ~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~~~l~~---~~~pei~~~~l~~------~~L~ 274 (1320)
.|| |. ..|.|.++|.||+|||||.|.+ ..|.||.++++.++..+.+ ...|+++++++.. .++.
T Consensus 350 ~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~-~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~ 421 (702)
T 2p6r_A 350 RFD---GY----SKRIKVSEYKQMAGRAGRPGMD-ERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLS 421 (702)
T ss_dssp EES---SS----EEECCHHHHHHHHTTBSCTTTC-SCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHH
T ss_pred eeC---CC----CCcCCHHHHHHHhhhcCCCCCC-CCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHH
Confidence 566 22 5799999999999999999843 2369999999887655432 4578888888864 2333
Q ss_pred hccccccccccccccccccceecccccccccchhh---hhh----cCCChhhhhhhc--------------ccccccccc
Q psy1907 275 FGYLGVMQDCRYIGTYLVGFIWHWKNHYIQDQTLV---TFM----LTHLPTTYIKRK--------------SSEYKVGNG 333 (1320)
Q Consensus 275 ~~~l~~~~~~~~~~~~~~~~il~~~~l~~~d~~~f---~~~----~~p~~~~~~~~~--------------~~L~~lG~~ 333 (1320)
....|... ..+|+..| +|+ .+|+...+.+++ ..+|.||+.
T Consensus 422 ~~~~g~~~-------------------~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~ 482 (702)
T 2p6r_A 422 IICDGYAK-------------------TLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSL 482 (702)
T ss_dssp HHHHTSCS-------------------SHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEEECHHHHH
T ss_pred HHHcCCCC-------------------CHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeECCeeccChHHHH
Confidence 33333211 11222222 222 145555444333 345778999
Q ss_pred ccccccCchhhhhhc
Q psy1907 334 EDSFCVSPLYNLTIQ 348 (1320)
Q Consensus 334 ~~~~~v~p~~~~~l~ 348 (1320)
++.+|++|..+++++
T Consensus 483 ~~~~~~~~~~~~~~~ 497 (702)
T 2p6r_A 483 VSRLYIDPLTGFIFH 497 (702)
T ss_dssp HHHTTCCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 999999999999975
No 9
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.97 E-value=4.8e-32 Score=346.48 Aligned_cols=317 Identities=14% Similarity=0.088 Sum_probs=214.1
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCc-CHHHHHhhcCCCCEEEeC
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL-DAQKFSEFFDDAPVFRIP 78 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl-~~~~f~~~f~~~~vi~i~ 78 (1320)
||||+|++.+..++. ++++++|||||||+.. +.++ ...++.+....++.|+|+||||+ |++.+++||+ ++++..+
T Consensus 127 ~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~-~~~~-~~~l~~i~~~~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~ 203 (715)
T 2va8_A 127 TTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN-DPER-GPVVESVTIRAKRRNLLALSATISNYKQIAKWLG-AEPVATN 203 (715)
T ss_dssp ECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG-CTTT-HHHHHHHHHHHHTSEEEEEESCCTTHHHHHHHHT-CEEEECC
T ss_pred EcHHHHHHHHhCChhHhhccCEEEEechhhcC-Cccc-chHHHHHHHhcccCcEEEEcCCCCCHHHHHHHhC-CCccCCC
Confidence 699999999988887 9999999999999743 2223 23344444333389999999999 5899999995 6678888
Q ss_pred CcccceeEEEEcCC--------------ccch--HHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHh--h
Q psy1907 79 GRRFPVDIYYTKAP--------------EADY--IDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRR--L 140 (1320)
Q Consensus 79 g~~~pV~~~y~~~~--------------~~~~--l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~--l 140 (1320)
++++|+...+...+ ...+ .+.....+..++. +++++|||++|+++++.++..|.+.+.. +
T Consensus 204 ~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~ 281 (715)
T 2va8_A 204 WRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSL 281 (715)
T ss_dssp CCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccC
Confidence 89888876543211 0000 1233444444443 4689999999999999999999864321 0
Q ss_pred -----------cCCC--------------CCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEE
Q psy1907 141 -----------GSKI--------------KELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVI 195 (1320)
Q Consensus 141 -----------~~~~--------------~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VI 195 (1320)
.... ....+.++||+|++++|..+++.|++|.++||||||++|+|||+|++++||
T Consensus 282 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI 361 (715)
T 2va8_A 282 DENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVII 361 (715)
T ss_dssp CHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEE
T ss_pred ChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEE
Confidence 0000 012488999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHH-Hhhccc---ccCCccccCCcch-
Q psy1907 196 DPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEV-LRGCAH---VLGEEVLRPEVSQ- 270 (1320)
Q Consensus 196 D~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~-~~~l~~---~~~pei~~~~l~~- 270 (1320)
++ ...||++++.. ..|+|.++|.||+|||||.|.+ ..|.||.++++++ +..+.+ ...|+++++++..
T Consensus 362 ~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~-~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~ 433 (715)
T 2va8_A 362 GD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFD-QIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSE 433 (715)
T ss_dssp CC----C-----------------CHHHHHHHHTTBCCTTTC-SCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSH
T ss_pred eC----CeeccccCCCC---CCcCCHHHHHHHhhhcCCCCCC-CCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCch
Confidence 96 45677666543 6799999999999999999832 1259999998654 333222 3568888888854
Q ss_pred -----hhhhhccccccccccccccccccceecccccccccchhh---hhhcCC-Chhhhhhhcc---------------c
Q psy1907 271 -----PFRSFGYLGVMQDCRYIGTYLVGFIWHWKNHYIQDQTLV---TFMLTH-LPTTYIKRKS---------------S 326 (1320)
Q Consensus 271 -----~~L~~~~l~~~~~~~~~~~~~~~~il~~~~l~~~d~~~f---~~~~~p-~~~~~~~~~~---------------~ 326 (1320)
.++.+...|... ..+|+..| +|+..+ +...+.++++ .
T Consensus 434 ~~l~~~~l~~~~~g~~~-------------------~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~ 494 (715)
T 2va8_A 434 RAFYTFLLGILSAEGNL-------------------SEKQLENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFA 494 (715)
T ss_dssp HHHHHHHHHHHHHHCSE-------------------EHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEE
T ss_pred hHHHHHHHHHHhccccC-------------------CHHHHHHHHHhhHHHhhcchHHHHHHHHHHHHCcCEeecCCeEe
Confidence 334444444221 11233332 333322 2222222222 5
Q ss_pred cccccccccccccCchhhhhhcc
Q psy1907 327 EYKVGNGEDSFCVSPLYNLTIQS 349 (1320)
Q Consensus 327 L~~lG~~~~~~~v~p~~~~~l~~ 349 (1320)
+|.||+.++.+|++|.++++++.
T Consensus 495 ~t~lG~~~~~~~~~~~~~~~~~~ 517 (715)
T 2va8_A 495 LTNFGKRVADLYINPFTADIIRK 517 (715)
T ss_dssp ECHHHHHHHHHTCCHHHHHHHHH
T ss_pred eChHHHHHHHHcCCHhHHHHHHH
Confidence 58889999999999999999753
No 10
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.96 E-value=2.9e-29 Score=321.01 Aligned_cols=303 Identities=17% Similarity=0.153 Sum_probs=222.7
Q ss_pred CChhhHHHHHHH-HHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHH--HHhCCCCCCe
Q psy1907 670 PIYPFKQDLIDA-VRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVA--EEMGVKLGCE 746 (1320)
Q Consensus 670 Pi~~~~~~il~~-i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva--~e~~~~lG~~ 746 (1320)
..++++.+++.+ +.+++.++|+||||||||++.++++++..... +++|+|++|+|..|..++++++ .++|.++|..
T Consensus 23 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~ 101 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMA 101 (720)
T ss_dssp BCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEE
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEe
Confidence 568888899988 89999999999999999999999988654422 4589999999999999999996 3456666555
Q ss_pred eeEEeecCccCCCCccEEEEccHHHHHHHhcCCC-CCCccEEEEcccc-----cc----------------------e--
Q psy1907 747 VGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPD-LASYSVMIIDEAH-----PK----------------------V-- 796 (1320)
Q Consensus 747 VGY~irfe~~~s~~T~i~y~TdG~Llrel~~dp~-L~~ys~iIiDE~H-----ER----------------------~-- 796 (1320)
+| .++++++...++.|+|||.|+|++.+..++. +.++++||||||| +| +
T Consensus 102 ~G-~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~ 180 (720)
T 2zj8_A 102 TG-DYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIG 180 (720)
T ss_dssp CS-CSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCS
T ss_pred cC-CCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcC
Confidence 55 4455555556899999999999999999886 8999999999999 66 0
Q ss_pred --------------------------EEEc------CCc------------------cc---------------------
Q psy1907 797 --------------------------YVID------PGF------------------CK--------------------- 805 (1320)
Q Consensus 797 --------------------------~ViD------~G~------------------~k--------------------- 805 (1320)
+..+ .|. .+
T Consensus 181 n~~~~~~~l~~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~ 260 (720)
T 2zj8_A 181 NPEELAEWLNAELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKK 260 (720)
T ss_dssp CHHHHHHHTTEEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHHH
Confidence 0000 000 00
Q ss_pred ------------------------------------eeeccC----------------------------CCCcc----e
Q psy1907 806 ------------------------------------QNNFNS----------------------------RTGME----S 817 (1320)
Q Consensus 806 ------------------------------------~~~y~~----------------------------~~~~~----~ 817 (1320)
...+.. ..|++ .
T Consensus 261 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~ 340 (720)
T 2zj8_A 261 VKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFR 340 (720)
T ss_dssp HGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSE
T ss_pred HHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceE
Confidence 000000 00110 1
Q ss_pred eEE-----------EEecHhhHHHHhcccCCcc---CCeEEEecchHHhhh---hccCCCchhhhcc-----ChHHHHHH
Q psy1907 818 LTV-----------VPISKASANQRAGRAGRVA---AGKCFRLYTAWAYKH---ELEDNTVPEIQRI-----NLGNAVLM 875 (1320)
Q Consensus 818 L~~-----------~~iSkasa~QR~GRAGR~~---pG~cyrLyt~~~~~~---~l~~~~~PEI~R~-----~L~~~vL~ 875 (1320)
.++ .|+|.+++.||+|||||.+ +|+||.+|++..+.. .+.....++|... .|...++.
T Consensus 341 ~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~ 420 (720)
T 2zj8_A 341 VIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLA 420 (720)
T ss_dssp EEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHH
T ss_pred EEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHH
Confidence 222 5899999999999999998 899999999765322 1222333444322 35556676
Q ss_pred HHHcCCC----Ccc---cccCC------CCCChHHHHHHHHHHHHccccC-CCC---CccccccccccccCChhhHHHHH
Q psy1907 876 LKALGIN----DLI---HFDFL------DPPPHETLVLALEQLYALGALN-HHG---DLTKLGRRMAEFPLDPMMGKMLL 938 (1320)
Q Consensus 876 lk~lgi~----d~~---~f~fl------dpP~~~~l~~Ale~L~~LgAld-~~g---~LT~lG~~ma~lPldP~laK~Ll 938 (1320)
+.+.|.. |+. .+.|+ ++|..+.+..|++.|..+|+|+ +++ .+|++|+.|+.+|++|..+|+++
T Consensus 421 ~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~ 500 (720)
T 2zj8_A 421 LIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFK 500 (720)
T ss_dssp HHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcCCHHHHHHHH
Confidence 6666632 222 23444 2334578999999999999998 655 79999999999999999999999
Q ss_pred hhhhc----cchHHHHHHHhhcccCCccccCChhHHHHHH
Q psy1907 939 ASEKY----KCVEEIVTIASMLSVNGAIFYRPKDKIIHAD 974 (1320)
Q Consensus 939 ~s~~~----~c~~e~ltIaA~Lsv~~~~f~~p~~~~~~a~ 974 (1320)
.+... .|..++++|+|+.++-+.+|++|.++..-.+
T Consensus 501 ~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~~ 540 (720)
T 2zj8_A 501 DKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEE 540 (720)
T ss_dssp HHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHHHHHH
T ss_pred HHHHhhccCCCHHHHHHHhccCccccccccCHHHHHHHHH
Confidence 99887 8999999999999875678999887654433
No 11
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.96 E-value=8.9e-30 Score=325.79 Aligned_cols=233 Identities=13% Similarity=0.094 Sum_probs=176.6
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCC-----ccCcCcchHHHHHHHHhhcCCCCcEEEEecCc-CHHHHHhhcCCCC
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAH-----ERTLHTDILFGLVKDIVRFRSDLKLLISSATL-DAQKFSEFFDDAP 73 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaH-----eR~l~td~ll~llk~l~~~r~~~qlIl~SATl-~~~~f~~~f~~~~ 73 (1320)
+|||+|.+.+..++. ++++++||||||| +|+..++.+++.++ ++.|+|+||||+ |++.+++||+ ++
T Consensus 120 ~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~------~~~~ii~lSATl~n~~~~~~~l~-~~ 192 (720)
T 2zj8_A 120 ATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML------GKAQIIGLSATIGNPEELAEWLN-AE 192 (720)
T ss_dssp ECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB------TTBEEEEEECCCSCHHHHHHHTT-EE
T ss_pred ECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh------cCCeEEEEcCCcCCHHHHHHHhC-Cc
Confidence 699999999888776 8999999999999 55555554444443 378999999999 7899999995 55
Q ss_pred EEEeCCcccceeEEEEcCCccch-------HHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcC----
Q psy1907 74 VFRIPGRRFPVDIYYTKAPEADY-------IDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGS---- 142 (1320)
Q Consensus 74 vi~i~g~~~pV~~~y~~~~~~~~-------l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~---- 142 (1320)
.+..++++.|+...+...+...+ .......+..++. +++++|||++|+++++.++..|.+.+..+..
T Consensus 193 ~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~ 270 (720)
T 2zj8_A 193 LIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEI 270 (720)
T ss_dssp EEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHH
T ss_pred ccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhH
Confidence 67778888888765433222111 1122333333332 3589999999999999999999875432100
Q ss_pred --------CC------------CCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCcc
Q psy1907 143 --------KI------------KELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQ 202 (1320)
Q Consensus 143 --------~~------------~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~ 202 (1320)
.. -...+.++||+|++++|..+++.|++|.++|||||+++++|||+|++++||+.+
T Consensus 271 ~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~---- 346 (720)
T 2zj8_A 271 RALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDI---- 346 (720)
T ss_dssp HHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCS----
T ss_pred HHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCC----
Confidence 00 012489999999999999999999999999999999999999999999999854
Q ss_pred ccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHHHh
Q psy1907 203 NNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEVLR 253 (1320)
Q Consensus 203 ~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~~ 253 (1320)
..|| ..| ..|.|.++|.||+|||||.|.+ ..|.||.++++.++.
T Consensus 347 ~~yd-~~g-----~~~~s~~~~~Qr~GRaGR~g~~-~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 347 WRYS-DFG-----MERIPIIEVHQMLGRAGRPKYD-EVGEGIIVSTSDDPR 390 (720)
T ss_dssp EECC-SSS-----CEECCHHHHHHHHTTBCCTTTC-SEEEEEEECSSSCHH
T ss_pred eeec-CCC-----CccCCHHHHHHHHhhcCCCCCC-CCceEEEEecCccHH
Confidence 3455 222 3699999999999999999843 236899999976543
No 12
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.93 E-value=2.2e-25 Score=268.71 Aligned_cols=214 Identities=18% Similarity=0.183 Sum_probs=170.4
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhh--cCCCCcEEEEecCcCHH--H-HHhhcCCCCE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVR--FRSDLKLLISSATLDAQ--K-FSEFFDDAPV 74 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~--~r~~~qlIl~SATl~~~--~-f~~~f~~~~v 74 (1320)
+|||+|++.+..... ++++++||||||| +++++++...+.+.+.. .+++.|+++||||++.+ . ...|+.+...
T Consensus 185 ~Tp~~l~~~l~~~~~~l~~~~~lVlDEah-~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~ 263 (434)
T 2db3_A 185 ATPGRLLDFVDRTFITFEDTRFVVLDEAD-RMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVF 263 (434)
T ss_dssp ECHHHHHHHHHTTSCCCTTCCEEEEETHH-HHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEE
T ss_pred EChHHHHHHHHhCCcccccCCeEEEccHh-hhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEE
Confidence 499999999887665 8999999999998 67888877766666544 36789999999999653 3 3446655544
Q ss_pred EEeCC---cccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy1907 75 FRIPG---RRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILP 151 (1320)
Q Consensus 75 i~i~g---~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~ 151 (1320)
+.+.. ....+...+...+..+....++ .+..... +.+|||++++++++.+++.|.+ .++.+..
T Consensus 264 i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~----~~l~~~~-~~~lVF~~t~~~a~~l~~~L~~---------~~~~~~~ 329 (434)
T 2db3_A 264 VAIGIVGGACSDVKQTIYEVNKYAKRSKLI----EILSEQA-DGTIVFVETKRGADFLASFLSE---------KEFPTTS 329 (434)
T ss_dssp EEESSTTCCCTTEEEEEEECCGGGHHHHHH----HHHHHCC-TTEEEECSSHHHHHHHHHHHHH---------TTCCEEE
T ss_pred EEeccccccccccceEEEEeCcHHHHHHHH----HHHHhCC-CCEEEEEeCcHHHHHHHHHHHh---------CCCCEEE
Confidence 54432 2344566565555555444433 3333333 3499999999999999999986 3678999
Q ss_pred ecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhc
Q psy1907 152 VYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVI 231 (1320)
Q Consensus 152 LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRA 231 (1320)
+||++++.+|..+++.|++|..+||||||++++|||||+|++||++++ |.+.++|.||+|||
T Consensus 330 lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~------------------p~~~~~y~qriGR~ 391 (434)
T 2db3_A 330 IHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDM------------------PSKIDDYVHRIGRT 391 (434)
T ss_dssp ESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSC------------------CSSHHHHHHHHTTS
T ss_pred EeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECC------------------CCCHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999887 56789999999999
Q ss_pred CCCCCCCCceEEEEecCHH
Q psy1907 232 TGFNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 232 GR~g~g~~fg~~~~L~~~~ 250 (1320)
||.|.. |.|+.+++.+
T Consensus 392 gR~g~~---G~a~~~~~~~ 407 (434)
T 2db3_A 392 GRVGNN---GRATSFFDPE 407 (434)
T ss_dssp SCTTCC---EEEEEEECTT
T ss_pred ccCCCC---CEEEEEEecc
Confidence 999886 7999999843
No 13
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.92 E-value=7.1e-26 Score=269.00 Aligned_cols=221 Identities=13% Similarity=0.225 Sum_probs=161.3
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHH---HHhhcCCCCEEE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQK---FSEFFDDAPVFR 76 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~---f~~~f~~~~vi~ 76 (1320)
+|||+|++.+..+.. +.++++||+||||. ..+.++...+.+.+...+++.|+|+||||++... ...++.++..+.
T Consensus 165 ~T~~~l~~~l~~~~~~~~~~~~vViDEah~-~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 243 (414)
T 3eiq_A 165 GTPGRVFDMLNRRYLSPKYIKMFVLDEADE-MLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRIL 243 (414)
T ss_dssp ECHHHHHHHHHHTSSCSTTCCEEEECSHHH-HHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEEC
T ss_pred ECHHHHHHHHHcCCcccccCcEEEEECHHH-hhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEE
Confidence 599999999987765 88999999999995 4556666666666667778999999999996533 345665554454
Q ss_pred eCCcc---cceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEec
Q psy1907 77 IPGRR---FPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVY 153 (1320)
Q Consensus 77 i~g~~---~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH 153 (1320)
+.... ..+...|......+. ....+..+....+.+++|||++++++++.+++.|.+ .++.+..+|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~---------~~~~~~~~h 311 (414)
T 3eiq_A 244 VKKEELTLEGIRQFYINVEREEW---KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA---------RDFTVSAMH 311 (414)
T ss_dssp CCCCCCCTTSCCEEEEECSSSTT---HHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHT---------TTCCCEEC-
T ss_pred ecCCccCCCCceEEEEEeChHHh---HHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHh---------cCCeEEEec
Confidence 44332 234455554443332 233445555566678999999999999999999976 367899999
Q ss_pred CCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCC
Q psy1907 154 SNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITG 233 (1320)
Q Consensus 154 ~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR 233 (1320)
|+|++.+|.++++.|++|..+|||||+++++|||+|++++||++++ |.|..+|.||+|||||
T Consensus 312 ~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR 373 (414)
T 3eiq_A 312 GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL------------------PTNRENYIHRIGRGGR 373 (414)
T ss_dssp --CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSC------------------CSSTHHHHHHSCCC--
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCC------------------CCCHHHhhhhcCcccC
Confidence 9999999999999999999999999999999999999999999887 5678999999999999
Q ss_pred CCCCCCceEEEEecCHHHHhhc
Q psy1907 234 FNPLSDFRGCAHVLGEEVLRGC 255 (1320)
Q Consensus 234 ~g~g~~fg~~~~L~~~~~~~~l 255 (1320)
.|.. |.||.++++++...+
T Consensus 374 ~g~~---g~~~~~~~~~~~~~~ 392 (414)
T 3eiq_A 374 FGRK---GVAINMVTEEDKRTL 392 (414)
T ss_dssp --------CEEEEECSTHHHHH
T ss_pred CCCC---ceEEEEEcHHHHHHH
Confidence 9865 589999997765543
No 14
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.92 E-value=2.7e-25 Score=269.24 Aligned_cols=214 Identities=19% Similarity=0.209 Sum_probs=164.4
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhcCCCCEEEeCCc
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFFDDAPVFRIPGR 80 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~~~~vi~i~g~ 80 (1320)
||+|+|.+++.+++.++++++|||||||.++...+...+++... ..+++.|+|+||||++.+....++++.+++.+. +
T Consensus 93 ~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~-~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~-~ 170 (451)
T 2jlq_A 93 MCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTR-VEMGEAAAIFMTATPPGSTDPFPQSNSPIEDIE-R 170 (451)
T ss_dssp EEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHH-HHTTSCEEEEECSSCTTCCCSSCCCSSCEEEEE-C
T ss_pred EChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHh-hcCCCceEEEEccCCCccchhhhcCCCceEecC-c
Confidence 58999999999998999999999999997755555555555432 235679999999999775555555566666543 2
Q ss_pred ccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHH
Q psy1907 81 RFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDM 160 (1320)
Q Consensus 81 ~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~ 160 (1320)
..|...+ . .. ...... ..+++|||++|+++++.+++.|.+. ++.+..+||.+.
T Consensus 171 ~~p~~~~-~-----~~--------~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~---------g~~~~~lh~~~~--- 223 (451)
T 2jlq_A 171 EIPERSW-N-----TG--------FDWITD-YQGKTVWFVPSIKAGNDIANCLRKS---------GKRVIQLSRKTF--- 223 (451)
T ss_dssp CCCSSCC-S-----SS--------CHHHHH-CCSCEEEECSSHHHHHHHHHHHHTT---------TCCEEEECTTTH---
T ss_pred cCCchhh-H-----HH--------HHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHc---------CCeEEECCHHHH---
Confidence 3332111 0 00 011112 2578999999999999999999762 677889999754
Q ss_pred HHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccce---eccCHhhHHHHhhhcCCCCCC
Q psy1907 161 QTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTV---VPISKASANQRAGVITGFNPL 237 (1320)
Q Consensus 161 r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~---~piSk~s~~QR~GRAGR~g~g 237 (1320)
.++++.|++|.++||||||++|+|||||+ ++|||+|+.+.+.|| ..+...+.. .|.|.++|.||+|||||.|.+
T Consensus 224 -~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~ 300 (451)
T 2jlq_A 224 -DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ 300 (451)
T ss_dssp -HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred -HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccceeeecccccCCHHHHHHhccccCCCCCC
Confidence 46899999999999999999999999999 999999998888887 556666665 999999999999999999962
Q ss_pred CCceEEEEecC
Q psy1907 238 SDFRGCAHVLG 248 (1320)
Q Consensus 238 ~~fg~~~~L~~ 248 (1320)
. |.||.++.
T Consensus 301 ~--g~~~~~~~ 309 (451)
T 2jlq_A 301 E--DDQYVFSG 309 (451)
T ss_dssp C--CEEEEECS
T ss_pred C--ccEEEEeC
Confidence 1 47887764
No 15
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.91 E-value=1.8e-24 Score=256.50 Aligned_cols=224 Identities=12% Similarity=0.124 Sum_probs=170.0
Q ss_pred CCHHHHHHHHcCCCC--CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHH---HHHhhcCCCCEE
Q psy1907 1 MTDGTLHREFLSEPD--LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQ---KFSEFFDDAPVF 75 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~--Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~---~f~~~f~~~~vi 75 (1320)
+|||+|++.+..... ++++++||+||||...-..++...+.......+++.|+|+||||++.. ....++.++..+
T Consensus 149 ~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 228 (412)
T 3fht_A 149 GTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI 228 (412)
T ss_dssp ECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEE
T ss_pred ECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEE
Confidence 599999999976444 689999999999953322445444444444567789999999999663 344566555555
Q ss_pred EeCCcc---cceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEe
Q psy1907 76 RIPGRR---FPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPV 152 (1320)
Q Consensus 76 ~i~g~~---~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~L 152 (1320)
.+.... ..+...+...+..+ .....+..+....+.+++|||++++.+++.++..|.+. ++.+..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~ 296 (412)
T 3fht_A 229 KLKREEETLDTIKQYYVLCSSRD---EKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE---------GHQVALL 296 (412)
T ss_dssp CCCGGGSSCTTEEEEEEECSSHH---HHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT---------TCCCEEE
T ss_pred eeccccccccCceEEEEEcCChH---HHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC---------CCeEEEe
Confidence 544322 23444554443322 22333444444445678999999999999999999873 6778999
Q ss_pred cCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcC
Q psy1907 153 YSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVIT 232 (1320)
Q Consensus 153 H~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAG 232 (1320)
||+|++.+|..+++.|++|..+|||||+++++|||+|++++||++|++..+.+ +.|..+|.||+||||
T Consensus 297 ~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~------------~~s~~~~~Qr~GR~g 364 (412)
T 3fht_A 297 SGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG------------NPDNETYLHRIGRTG 364 (412)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSS------------SBCHHHHHHHHTTSS
T ss_pred cCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCC------------CcchheeecccCccc
Confidence 99999999999999999999999999999999999999999999998654433 467899999999999
Q ss_pred CCCCCCCceEEEEecCHHH
Q psy1907 233 GFNPLSDFRGCAHVLGEEV 251 (1320)
Q Consensus 233 R~g~g~~fg~~~~L~~~~~ 251 (1320)
|.|.. |.|+.+++..+
T Consensus 365 R~g~~---g~~~~~~~~~~ 380 (412)
T 3fht_A 365 RFGKR---GLAVNMVDSKH 380 (412)
T ss_dssp CTTCC---EEEEEEECSHH
T ss_pred CCCCC---ceEEEEEcChh
Confidence 99886 79999998543
No 16
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.91 E-value=1.1e-24 Score=259.26 Aligned_cols=220 Identities=13% Similarity=0.218 Sum_probs=170.2
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHH---HHhhcCCCCEEE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQK---FSEFFDDAPVFR 76 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~---f~~~f~~~~vi~ 76 (1320)
+|||+|++.+..... +.++++|||||||. .++.++...+.+.+...+++.|+++||||++.+. ...|+.++..+.
T Consensus 161 ~Tp~~l~~~l~~~~~~~~~~~~vViDEah~-~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 239 (410)
T 2j0s_A 161 GTPGRVFDMIRRRSLRTRAIKMLVLDEADE-MLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRIL 239 (410)
T ss_dssp ECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEEC
T ss_pred cCHHHHHHHHHhCCccHhheeEEEEccHHH-HHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEE
Confidence 499999999887655 89999999999994 5566666666665556678899999999996642 334555543343
Q ss_pred eCCcc---cceeEEEEcCCccc-hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEe
Q psy1907 77 IPGRR---FPVDIYYTKAPEAD-YIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPV 152 (1320)
Q Consensus 77 i~g~~---~pV~~~y~~~~~~~-~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~L 152 (1320)
+.... ..+...+...+..+ ..+. +..+......+++|||++++++++.+++.|.+. ++.+..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~k~~~----l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~ 306 (410)
T 2j0s_A 240 VKRDELTLEGIKQFFVAVEREEWKFDT----LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA---------NFTVSSM 306 (410)
T ss_dssp CCGGGCSCTTEEEEEEEESSTTHHHHH----HHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT---------TCCCEEE
T ss_pred ecCccccCCCceEEEEEeCcHHhHHHH----HHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhC---------CCceEEe
Confidence 33222 23455554444333 2222 333333334578999999999999999999863 6789999
Q ss_pred cCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcC
Q psy1907 153 YSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVIT 232 (1320)
Q Consensus 153 H~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAG 232 (1320)
||++++.+|..+++.|++|..+|||||+++++|||+|++++||++++ |.+.++|.||+||||
T Consensus 307 h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~------------------p~s~~~~~Qr~GR~g 368 (410)
T 2j0s_A 307 HGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDL------------------PNNRELYIHRIGRSG 368 (410)
T ss_dssp CTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSC------------------CSSHHHHHHHHTTSS
T ss_pred eCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECC------------------CCCHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999886 567899999999999
Q ss_pred CCCCCCCceEEEEecCHHHHhhc
Q psy1907 233 GFNPLSDFRGCAHVLGEEVLRGC 255 (1320)
Q Consensus 233 R~g~g~~fg~~~~L~~~~~~~~l 255 (1320)
|.|.. |.|+.++++++...+
T Consensus 369 R~g~~---g~~~~~~~~~~~~~~ 388 (410)
T 2j0s_A 369 RYGRK---GVAINFVKNDDIRIL 388 (410)
T ss_dssp GGGCC---EEEEEEEEGGGHHHH
T ss_pred CCCCc---eEEEEEecHHHHHHH
Confidence 99875 799999998775444
No 17
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.91 E-value=5e-24 Score=250.73 Aligned_cols=223 Identities=13% Similarity=0.156 Sum_probs=171.0
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH--HH-HHhhcCCCCEEE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA--QK-FSEFFDDAPVFR 76 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~--~~-f~~~f~~~~vi~ 76 (1320)
+|||+|++.+..... ++++++||+||||...-..++...+.+.....+++.|+|+||||++. .. +..++.+...+.
T Consensus 127 ~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 206 (395)
T 3pey_A 127 GTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLE 206 (395)
T ss_dssp ECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEEC
T ss_pred EcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEE
Confidence 599999999877665 89999999999996544355555555555556778999999999965 23 344555554554
Q ss_pred eCCccc---ceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEec
Q psy1907 77 IPGRRF---PVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVY 153 (1320)
Q Consensus 77 i~g~~~---pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH 153 (1320)
+..... .+...+...+.. ......+..+....+.+++|||++++.+++.+++.|.+. ++.+..+|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~~ 274 (395)
T 3pey_A 207 LQTNEVNVDAIKQLYMDCKNE---ADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE---------GHEVSILH 274 (395)
T ss_dssp CCGGGCSCTTEEEEEEECSSH---HHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT---------TCCCEEEC
T ss_pred ccccccccccccEEEEEcCch---HHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc---------CCcEEEeC
Confidence 443332 234444443222 223344445555556789999999999999999999863 67799999
Q ss_pred CCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCC
Q psy1907 154 SNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITG 233 (1320)
Q Consensus 154 ~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR 233 (1320)
|++++.+|.++++.|++|..+|||||+++++|||+|++++||++|++.. ...+.|..+|.||+|||||
T Consensus 275 ~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~------------~~~~~s~~~~~Qr~GR~gR 342 (395)
T 3pey_A 275 GDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTL------------ANGQADPATYIHRIGRTGR 342 (395)
T ss_dssp TTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBC------------TTSSBCHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCC------------CcCCCCHHHhhHhcccccc
Confidence 9999999999999999999999999999999999999999999887542 2236789999999999999
Q ss_pred CCCCCCceEEEEecCHH
Q psy1907 234 FNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 234 ~g~g~~fg~~~~L~~~~ 250 (1320)
.|.. |.|+.+++++
T Consensus 343 ~g~~---g~~~~~~~~~ 356 (395)
T 3pey_A 343 FGRK---GVAISFVHDK 356 (395)
T ss_dssp TTCC---EEEEEEECSH
T ss_pred CCCC---ceEEEEEech
Confidence 9886 6899998854
No 18
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.91 E-value=6.3e-24 Score=252.71 Aligned_cols=220 Identities=16% Similarity=0.144 Sum_probs=164.5
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhh--cC--CCCcEEEEecCcCH--HH-HHhhcCCC
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVR--FR--SDLKLLISSATLDA--QK-FSEFFDDA 72 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~--~r--~~~qlIl~SATl~~--~~-f~~~f~~~ 72 (1320)
+|||+|++.+..+.. ++++++||||||| +.++.++...+.+.+.. .+ ...++++||||++. .. +..++.+.
T Consensus 157 ~Tp~~l~~~l~~~~~~~~~~~~iViDEah-~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 235 (417)
T 2i4i_A 157 ATPGRLVDMMERGKIGLDFCKYLVLDEAD-RMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEY 235 (417)
T ss_dssp ECHHHHHHHHHTTSBCCTTCCEEEESSHH-HHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSC
T ss_pred EChHHHHHHHHcCCcChhhCcEEEEEChh-HhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCC
Confidence 599999999987765 8999999999999 44455554444444332 22 26789999999965 33 34455544
Q ss_pred CEEEeCCc---ccceeEEEEcCCccchHHHHHHHHHHHHhh-CCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeE
Q psy1907 73 PVFRIPGR---RFPVDIYYTKAPEADYIDACVVSILQIHAT-QPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELI 148 (1320)
Q Consensus 73 ~vi~i~g~---~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~-~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~ 148 (1320)
..+.+... ...+...+...+..+....+ ..+... ...+++|||++++++++.++..|.+. ++.
T Consensus 236 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l----~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~ 302 (417)
T 2i4i_A 236 IFLAVGRVGSTSENITQKVVWVEESDKRSFL----LDLLNATGKDSLTLVFVETKKGADSLEDFLYHE---------GYA 302 (417)
T ss_dssp EEEEEC----CCSSEEEEEEECCGGGHHHHH----HHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT---------TCC
T ss_pred EEEEeCCCCCCccCceEEEEEeccHhHHHHH----HHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC---------CCC
Confidence 34443321 12344445554444444433 233333 24578999999999999999999863 678
Q ss_pred EEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHh
Q psy1907 149 ILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRA 228 (1320)
Q Consensus 149 v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~ 228 (1320)
+..+||++++++|..+++.|++|..+|||||+++++|||+|++++||++++ |.|..+|.||+
T Consensus 303 ~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~------------------p~s~~~~~Qr~ 364 (417)
T 2i4i_A 303 CTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDL------------------PSDIEEYVHRI 364 (417)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSC------------------CSSHHHHHHHH
T ss_pred eeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcC------------------CCCHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999887 56789999999
Q ss_pred hhcCCCCCCCCceEEEEecCHHHHhhc
Q psy1907 229 GVITGFNPLSDFRGCAHVLGEEVLRGC 255 (1320)
Q Consensus 229 GRAGR~g~g~~fg~~~~L~~~~~~~~l 255 (1320)
|||||.|.. |.|+.++++++...+
T Consensus 365 GR~gR~g~~---g~~~~~~~~~~~~~~ 388 (417)
T 2i4i_A 365 GRTGRVGNL---GLATSFFNERNINIT 388 (417)
T ss_dssp TTBCC--CC---EEEEEEECGGGGGGH
T ss_pred CccccCCCC---ceEEEEEccccHHHH
Confidence 999999876 799999998766443
No 19
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.91 E-value=1.4e-24 Score=263.60 Aligned_cols=215 Identities=18% Similarity=0.203 Sum_probs=159.0
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhc-CCCCEEEeCC
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFF-DDAPVFRIPG 79 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f-~~~~vi~i~g 79 (1320)
||.|.+.+.++.++.++++++|||||||+++..+++..++++.+.. +++.|+|+||||++.+. ..+. .+.|+..+..
T Consensus 95 ~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il~SAT~~~~~-~~~~~~~~pi~~~~~ 172 (459)
T 2z83_A 95 MCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTATPPGTT-DPFPDSNAPIHDLQD 172 (459)
T ss_dssp EEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSCCCSSCEEEEEC
T ss_pred EchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc-cCCccEEEEEcCCCcch-hhhccCCCCeEEecc
Confidence 5789999999999899999999999999988888888888877653 46799999999996542 2222 2344443321
Q ss_pred cccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHH
Q psy1907 80 RRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTD 159 (1320)
Q Consensus 80 ~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~ 159 (1320)
..| ...+.. .+.. ... .++++|||++|+++++.+++.|.+. ++.+..+||.
T Consensus 173 -~~~---------~~~~~~-~~~~----l~~-~~~~~LVF~~s~~~~~~l~~~L~~~---------g~~v~~lh~~---- 223 (459)
T 2z83_A 173 -EIP---------DRAWSS-GYEW----ITE-YAGKTVWFVASVKMGNEIAMCLQRA---------GKKVIQLNRK---- 223 (459)
T ss_dssp -CCC---------SSCCSS-CCHH----HHH-CCSCEEEECSCHHHHHHHHHHHHHT---------TCCEEEESTT----
T ss_pred -cCC---------cchhHH-HHHH----HHh-cCCCEEEEeCChHHHHHHHHHHHhc---------CCcEEecCHH----
Confidence 111 111100 0111 111 2689999999999999999999873 6789999985
Q ss_pred HHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCcccc---ceeccCHhhHHHHhhhcCCCCC
Q psy1907 160 MQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESL---TVVPISKASANQRAGVITGFNP 236 (1320)
Q Consensus 160 ~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l---~~~piSk~s~~QR~GRAGR~g~ 236 (1320)
+|.++++.|++|.++||||||++|+|||||+ ++|||+|..+.+.|+. .+.+.+ ...|.|.++|.||+|||||.|.
T Consensus 224 ~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~-~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~ 301 (459)
T 2z83_A 224 SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILE-EGEGRVILGNPSPITSASAAQRRGRVGRNPN 301 (459)
T ss_dssp CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEEC-SSSCEEEECSCEECCHHHHHHHHTTSSCCTT
T ss_pred HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccccccc-ccccccccccCCCCCHHHHHHhccccCCCCC
Confidence 6788999999999999999999999999999 9999999877666542 233333 4489999999999999999984
Q ss_pred CCCceEEEEecCHH
Q psy1907 237 LSDFRGCAHVLGEE 250 (1320)
Q Consensus 237 g~~fg~~~~L~~~~ 250 (1320)
.. |.||.+++..
T Consensus 302 ~~--G~~~~~~~~~ 313 (459)
T 2z83_A 302 QV--GDEYHYGGAT 313 (459)
T ss_dssp CC--CEEEEECSCC
T ss_pred CC--CeEEEEEccc
Confidence 11 4888888764
No 20
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.90 E-value=1.3e-23 Score=244.62 Aligned_cols=218 Identities=16% Similarity=0.191 Sum_probs=174.9
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHH---HHHhhcCCCCEEE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQ---KFSEFFDDAPVFR 76 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~---~f~~~f~~~~vi~ 76 (1320)
+|||+|++.+..+.. +.++++||+||||. ..+.++...+.+.+...+++.++++||||++.+ .+..|+++...+.
T Consensus 129 ~T~~~l~~~~~~~~~~~~~~~~iIiDEah~-~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 207 (367)
T 1hv8_A 129 GTPGRILDHINRGTLNLKNVKYFILDEADE-MLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIK 207 (367)
T ss_dssp ECHHHHHHHHHTTCSCTTSCCEEEEETHHH-HHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEE
T ss_pred ecHHHHHHHHHcCCcccccCCEEEEeCchH-hhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEE
Confidence 599999999887665 89999999999995 345556555666555667889999999999764 3456776655554
Q ss_pred eCCcccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCC
Q psy1907 77 IPGRRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNL 156 (1320)
Q Consensus 77 i~g~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l 156 (1320)
.. ...++...|......+.++.+... .. .+++++|||+++.++++.+++.|.+. ++.+..+||++
T Consensus 208 ~~-~~~~~~~~~~~~~~~~~~~~l~~~----l~-~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~ 272 (367)
T 1hv8_A 208 AK-INANIEQSYVEVNENERFEALCRL----LK-NKEFYGLVFCKTKRDTKELASMLRDI---------GFKAGAIHGDL 272 (367)
T ss_dssp CC-SSSSSEEEEEECCGGGHHHHHHHH----HC-STTCCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECSSS
T ss_pred ec-CCCCceEEEEEeChHHHHHHHHHH----Hh-cCCCcEEEEECCHHHHHHHHHHHHhc---------CCCeEEeeCCC
Confidence 33 334566666666666665543332 22 44678999999999999999999863 67899999999
Q ss_pred CHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCC
Q psy1907 157 PTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNP 236 (1320)
Q Consensus 157 ~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~ 236 (1320)
++.+|..+++.|++|..+|||||+++++|+|+|++++||++++ |.|..+|.||+|||||.|.
T Consensus 273 ~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~------------------~~s~~~~~Q~~GR~~R~g~ 334 (367)
T 1hv8_A 273 SQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHL------------------PQNPESYMHRIGRTGRAGK 334 (367)
T ss_dssp CHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSC------------------CSCHHHHHHHSTTTCCSSS
T ss_pred CHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecC------------------CCCHHHhhhcccccccCCC
Confidence 9999999999999999999999999999999999999999876 6688999999999999985
Q ss_pred CCCceEEEEecCHHHHhhc
Q psy1907 237 LSDFRGCAHVLGEEVLRGC 255 (1320)
Q Consensus 237 g~~fg~~~~L~~~~~~~~l 255 (1320)
. |.|+.+++++++..+
T Consensus 335 ~---g~~~~~~~~~~~~~~ 350 (367)
T 1hv8_A 335 K---GKAISIINRREYKKL 350 (367)
T ss_dssp C---CEEEEEECTTSHHHH
T ss_pred c---cEEEEEEcHHHHHHH
Confidence 4 589999998766554
No 21
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.90 E-value=1.8e-23 Score=247.61 Aligned_cols=220 Identities=14% Similarity=0.166 Sum_probs=168.8
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHH---HHHhhcCCCCEEE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQ---KFSEFFDDAPVFR 76 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~---~f~~~f~~~~vi~ 76 (1320)
+|||+|++.+..... ++++++||+||||. ..+.++...+.+.+...++..++++||||++.. .+..++.++..+.
T Consensus 145 ~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~-~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 223 (400)
T 1s2m_A 145 GTPGRVLDLASRKVADLSDCSLFIMDEADK-MLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEIN 223 (400)
T ss_dssp ECHHHHHHHHHTTCSCCTTCCEEEEESHHH-HSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEES
T ss_pred EchHHHHHHHHhCCcccccCCEEEEeCchH-hhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEE
Confidence 599999998877654 89999999999993 445444433333334456788999999999653 3455665443333
Q ss_pred eCCc--ccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecC
Q psy1907 77 IPGR--RFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYS 154 (1320)
Q Consensus 77 i~g~--~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~ 154 (1320)
+... ...+..++......+.... +..+....+.+++|||+++.++++.+++.|.+. ++.+..+||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~k~~~----l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~~~ 290 (400)
T 1s2m_A 224 LMEELTLKGITQYYAFVEERQKLHC----LNTLFSKLQINQAIIFCNSTNRVELLAKKITDL---------GYSCYYSHA 290 (400)
T ss_dssp CCSSCBCTTEEEEEEECCGGGHHHH----HHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH---------TCCEEEECT
T ss_pred eccccccCCceeEEEEechhhHHHH----HHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhc---------CCCeEEecC
Confidence 3322 2234555555544444433 233334445688999999999999999999863 677899999
Q ss_pred CCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCC
Q psy1907 155 NLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGF 234 (1320)
Q Consensus 155 ~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~ 234 (1320)
+|++.+|..+++.|++|..+|||||+++++|+|+|++++||++++ |.|..+|.||+|||||.
T Consensus 291 ~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~ 352 (400)
T 1s2m_A 291 RMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDF------------------PKTAETYLHRIGRSGRF 352 (400)
T ss_dssp TSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSC------------------CSSHHHHHHHHCBSSCT
T ss_pred CCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCC------------------CCCHHHHHHhcchhcCC
Confidence 999999999999999999999999999999999999999999876 56789999999999999
Q ss_pred CCCCCceEEEEecCHHHHhhc
Q psy1907 235 NPLSDFRGCAHVLGEEVLRGC 255 (1320)
Q Consensus 235 g~g~~fg~~~~L~~~~~~~~l 255 (1320)
|.. |.|+.++++++...+
T Consensus 353 g~~---g~~~~l~~~~~~~~~ 370 (400)
T 1s2m_A 353 GHL---GLAINLINWNDRFNL 370 (400)
T ss_dssp TCC---EEEEEEECGGGHHHH
T ss_pred CCC---ceEEEEeccchHHHH
Confidence 865 699999998776554
No 22
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.9e-24 Score=284.15 Aligned_cols=238 Identities=16% Similarity=0.112 Sum_probs=175.2
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCc-CHHHHHhhcC-----CCC
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL-DAQKFSEFFD-----DAP 73 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl-~~~~f~~~f~-----~~~ 73 (1320)
||||+|++++..++. ++++++||||||| +..+.++...+...+...+++.|+|+||||+ +...|.+|++ .+.
T Consensus 272 ~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH-~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~ 350 (1108)
T 3l9o_A 272 MTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCH 350 (1108)
T ss_dssp EEHHHHHHHHHHCSSHHHHEEEEEEETGG-GTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEE
T ss_pred eChHHHHHHHHcCccccccCCEEEEhhhh-hccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeE
Confidence 699999999988877 8999999999999 6666666666666666678899999999999 6666777663 244
Q ss_pred EEEeCCcccceeEEEEcCCcc----------c-----hH------------------------------------HHHHH
Q psy1907 74 VFRIPGRRFPVDIYYTKAPEA----------D-----YI------------------------------------DACVV 102 (1320)
Q Consensus 74 vi~i~g~~~pV~~~y~~~~~~----------~-----~l------------------------------------~~~i~ 102 (1320)
++....+..|+..++...... . +. ...+.
T Consensus 351 vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 430 (1108)
T 3l9o_A 351 IVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIY 430 (1108)
T ss_dssp EEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHH
T ss_pred EEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHH
Confidence 566677778877655332110 0 00 22333
Q ss_pred HHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhc---------------------CCCC---------CeEEEEe
Q psy1907 103 SILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLG---------------------SKIK---------ELIILPV 152 (1320)
Q Consensus 103 ~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~---------------------~~~~---------~~~v~~L 152 (1320)
.++..+...+.+++|||++++.+++.++..|......-. ...+ ...|.++
T Consensus 431 ~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~ 510 (1108)
T 3l9o_A 431 KIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIH 510 (1108)
T ss_dssp HHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEE
T ss_pred HHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeee
Confidence 344555555677999999999999999998864211000 0000 1128999
Q ss_pred cCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcC
Q psy1907 153 YSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVIT 232 (1320)
Q Consensus 153 H~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAG 232 (1320)
||+|++.+|..+++.|++|.++|||||+++++|||||++++||+++.+ |+.. ...|+|..+|.||+||||
T Consensus 511 Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~----~d~~------~~r~iS~~eyiQr~GRAG 580 (1108)
T 3l9o_A 511 HSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRK----WDGQ------QFRWVSGGEYIQMSGRAG 580 (1108)
T ss_dssp CSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEE----ESSS------CEEECCHHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcc----cCcc------ccccCCHHHHHHhhcccC
Confidence 999999999999999999999999999999999999999999987652 3322 235899999999999999
Q ss_pred CCCCCCCceEEEEecCHH
Q psy1907 233 GFNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 233 R~g~g~~fg~~~~L~~~~ 250 (1320)
|.|.. .-|.||.++++.
T Consensus 581 R~G~d-~~G~~ill~~~~ 597 (1108)
T 3l9o_A 581 RRGLD-DRGIVIMMIDEK 597 (1108)
T ss_dssp CSSSC-SSEEEEEEECCC
T ss_pred CCCCC-CceEEEEEecCC
Confidence 99932 126999998754
No 23
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.90 E-value=5.3e-23 Score=242.37 Aligned_cols=217 Identities=13% Similarity=0.185 Sum_probs=169.1
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH---HHHHhhcCCCCEEE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA---QKFSEFFDDAPVFR 76 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~---~~f~~~f~~~~vi~ 76 (1320)
+|||+|++.+..... ++++++||+||||...-..++...+.+.+...+++.|+++||||++. ..+..++.++..+.
T Consensus 134 ~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 213 (391)
T 1xti_A 134 GTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 213 (391)
T ss_dssp ECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEE
T ss_pred ECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEE
Confidence 599999998887665 89999999999995433345555555555556678999999999943 33455666555554
Q ss_pred eCCcc----cceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEe
Q psy1907 77 IPGRR----FPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPV 152 (1320)
Q Consensus 77 i~g~~----~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~L 152 (1320)
+.... ..+...+...+..+....... +....+.+++|||+++.++++.+++.|.+. ++.+..+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~ 280 (391)
T 1xti_A 214 VDDETKLTLHGLQQYYVKLKDNEKNRKLFD----LLDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAI 280 (391)
T ss_dssp CCCCCCCCCTTCEEEEEECCGGGHHHHHHH----HHHHSCCSEEEEECSCHHHHHHHHHHHHHT---------TCCEEEE
T ss_pred ecCccccCcccceEEEEEcCchhHHHHHHH----HHHhcCCCcEEEEeCcHHHHHHHHHHHHhC---------CCcEEEE
Confidence 44321 234556665555555444333 333345688999999999999999999863 6778999
Q ss_pred cCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcC
Q psy1907 153 YSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVIT 232 (1320)
Q Consensus 153 H~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAG 232 (1320)
||++++++|..+++.|++|..+|||||+++++|+|+|++++||++++ |.|..+|.||+||||
T Consensus 281 ~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~ 342 (391)
T 1xti_A 281 HRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM------------------PEDSDTYLHRVARAG 342 (391)
T ss_dssp CTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSC------------------CSSHHHHHHHHCBCS
T ss_pred eCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999886 567899999999999
Q ss_pred CCCCCCCceEEEEecCHHH
Q psy1907 233 GFNPLSDFRGCAHVLGEEV 251 (1320)
Q Consensus 233 R~g~g~~fg~~~~L~~~~~ 251 (1320)
|.|.. |.|+.++++++
T Consensus 343 R~g~~---g~~~~~~~~~~ 358 (391)
T 1xti_A 343 RFGTK---GLAITFVSDEN 358 (391)
T ss_dssp SSCCC---CEEEEEECSHH
T ss_pred CCCCc---eEEEEEEcccc
Confidence 99865 68999998653
No 24
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.89 E-value=4.4e-24 Score=267.38 Aligned_cols=214 Identities=19% Similarity=0.232 Sum_probs=161.4
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhcC-CCCEEEeCC
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFFD-DAPVFRIPG 79 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~-~~~vi~i~g 79 (1320)
||.|.|.+++..++.++++++|||||||+++...+..+..+.... .+++.|+|+||||++.. ...++. +.+++.+..
T Consensus 260 ~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l-~~~~~q~il~SAT~~~~-~~~~~~~~~~~~~v~~ 337 (618)
T 2whx_A 260 MCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRV-EMGEAAAIFMTATPPGS-TDPFPQSNSPIEDIER 337 (618)
T ss_dssp EEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HHTSCEEEEECSSCTTC-CCSSCCCSSCEEEEEC
T ss_pred EChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHh-cccCccEEEEECCCchh-hhhhhccCCceeeecc
Confidence 578999999999999999999999999987444444455444433 23679999999999654 333443 344444433
Q ss_pred cccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHH
Q psy1907 80 RRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTD 159 (1320)
Q Consensus 80 ~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~ 159 (1320)
. +| ...+ ... +..... .++++|||++|+++++.+++.|.+. ++.+..+||.
T Consensus 338 ~-~~---------~~~~-~~l----l~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~---------g~~v~~lhg~---- 388 (618)
T 2whx_A 338 E-IP---------ERSW-NTG----FDWITD-YQGKTVWFVPSIKAGNDIANCLRKS---------GKRVIQLSRK---- 388 (618)
T ss_dssp C-CC---------SSCC-SSS----CHHHHH-CCSCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTT----
T ss_pred c-CC---------HHHH-HHH----HHHHHh-CCCCEEEEECChhHHHHHHHHHHHc---------CCcEEEEChH----
Confidence 2 11 1111 111 111112 2689999999999999999999873 6789999984
Q ss_pred HHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccc--cCCCCccccceeccCHhhHHHHhhhcCCCCCC
Q psy1907 160 MQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNF--NSRTGMESLTVVPISKASANQRAGVITGFNPL 237 (1320)
Q Consensus 160 ~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~y--d~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g 237 (1320)
+|.++++.|++|.++||||||++|+||||| |++|||+|+...+.+ +...++......|.|.++|+||+|||||.|.+
T Consensus 389 ~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~ 467 (618)
T 2whx_A 389 TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ 467 (618)
T ss_dssp THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCC
Confidence 678899999999999999999999999997 999999999766554 44456667788899999999999999999753
Q ss_pred CCceEEEEecC
Q psy1907 238 SDFRGCAHVLG 248 (1320)
Q Consensus 238 ~~fg~~~~L~~ 248 (1320)
. |.||.+++
T Consensus 468 ~--G~ai~l~~ 476 (618)
T 2whx_A 468 E--DDQYVFSG 476 (618)
T ss_dssp C--CEEEEECS
T ss_pred C--CeEEEEcc
Confidence 2 58999987
No 25
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.89 E-value=1.9e-24 Score=263.32 Aligned_cols=224 Identities=13% Similarity=0.148 Sum_probs=54.9
Q ss_pred CCHHHHHHHHcCCCC--CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHH--HH-HhhcCCCCEE
Q psy1907 1 MTDGTLHREFLSEPD--LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQ--KF-SEFFDDAPVF 75 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~--Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~--~f-~~~f~~~~vi 75 (1320)
+|||+|++.+..... ++++++|||||||...-..++...+.......+++.|+|+||||++.+ .+ ..++.++.++
T Consensus 216 ~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i 295 (479)
T 3fmp_B 216 GTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI 295 (479)
T ss_dssp ECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEE
T ss_pred ECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEE
Confidence 599999999977554 689999999999953222344444444444567789999999999663 33 4466565556
Q ss_pred EeCCccc---ceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEe
Q psy1907 76 RIPGRRF---PVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPV 152 (1320)
Q Consensus 76 ~i~g~~~---pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~L 152 (1320)
.+..... .+...|...+... .....+..+......+++||||+++..++.++..|... ++.+..+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~---------~~~v~~l 363 (479)
T 3fmp_B 296 KLKREEETLDTIKQYYVLCSSRD---EKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE---------GHQVALL 363 (479)
T ss_dssp EEC-----------------------------------------------------------------------------
T ss_pred eccccccCcCCceEEEEEeCCHH---HHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhC---------CccEEEe
Confidence 5544322 2233333322211 12233344444445678999999999999999999763 6789999
Q ss_pred cCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcC
Q psy1907 153 YSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVIT 232 (1320)
Q Consensus 153 H~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAG 232 (1320)
||+|++.+|..+++.|++|..+|||||+++++|||+|++++||++|++....+ +.|..+|.||+||||
T Consensus 364 h~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~------------~~s~~~~~Qr~GRag 431 (479)
T 3fmp_B 364 SGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG------------NPDNETYLHRIGRTG 431 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCcc------------CCCHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999998543322 457789999999999
Q ss_pred CCCCCCCceEEEEecCHHH
Q psy1907 233 GFNPLSDFRGCAHVLGEEV 251 (1320)
Q Consensus 233 R~g~g~~fg~~~~L~~~~~ 251 (1320)
|.|.. |.|+.+++..+
T Consensus 432 R~g~~---G~~i~~~~~~~ 447 (479)
T 3fmp_B 432 RFGKR---GLAVNMVDSKH 447 (479)
T ss_dssp -------------------
T ss_pred cCCCC---ceEEEEEcCcc
Confidence 99875 58999988654
No 26
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.89 E-value=6.6e-24 Score=278.44 Aligned_cols=304 Identities=15% Similarity=0.134 Sum_probs=206.8
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCc-CHHHHHhhcC-----CCC
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL-DAQKFSEFFD-----DAP 73 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl-~~~~f~~~f~-----~~~ 73 (1320)
||||+|++.+..+.. ++++++||||||| +..+.++...+.+.+..++++.|+|++|||+ +...|.+|++ +..
T Consensus 129 ~Tpe~L~~~l~~~~~~l~~l~lvViDEaH-~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~ 207 (997)
T 4a4z_A 129 MTTEILRSMLYRGADLIRDVEFVIFDEVH-YVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNIY 207 (997)
T ss_dssp EEHHHHHHHHHHTCSGGGGEEEEEECCTT-CCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEE
T ss_pred ECHHHHHHHHHhCchhhcCCCEEEEECcc-cccccchHHHHHHHHHhcccCCCEEEEcCCCCChHHHHHHHhcccCCceE
Confidence 699999999877665 8999999999999 6777776666667677788899999999999 8889999985 333
Q ss_pred EEEeCCcccceeEEEEcCC--------ccch-------------------------------------------------
Q psy1907 74 VFRIPGRRFPVDIYYTKAP--------EADY------------------------------------------------- 96 (1320)
Q Consensus 74 vi~i~g~~~pV~~~y~~~~--------~~~~------------------------------------------------- 96 (1320)
++..+++..|+.+++.... ...+
T Consensus 208 vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~ 287 (997)
T 4a4z_A 208 VISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGR 287 (997)
T ss_dssp EEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC------------------------------------
T ss_pred EEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence 6666788888876543210 0000
Q ss_pred --------------------------------HHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHH--------
Q psy1907 97 --------------------------------IDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDR-------- 136 (1320)
Q Consensus 97 --------------------------------l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~-------- 136 (1320)
....+..++..+...+.+++|||++|+.+|+.++..|.+.
T Consensus 288 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~ 367 (997)
T 4a4z_A 288 GNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEK 367 (997)
T ss_dssp -----------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHH
T ss_pred ccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHH
Confidence 0011334455555566789999999999999999888531
Q ss_pred ----------HHhhcC------------CCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEE
Q psy1907 137 ----------VRRLGS------------KIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYV 194 (1320)
Q Consensus 137 ----------~~~l~~------------~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~V 194 (1320)
+..+.. ......+.++||+|++.+|..+++.|+.|.++|||||+++++|||+|+ +.|
T Consensus 368 ~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~V 446 (997)
T 4a4z_A 368 SQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTV 446 (997)
T ss_dssp HHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEE
T ss_pred HHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceE
Confidence 000000 000124789999999999999999999999999999999999999999 556
Q ss_pred EcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCH-----HHHhhcccccCCccccCCcc
Q psy1907 195 IDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGE-----EVLRGCAHVLGEEVLRPEVS 269 (1320)
Q Consensus 195 ID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~-----~~~~~l~~~~~pei~~~~l~ 269 (1320)
|.++.++ ||.. ...|+|..+|.||+|||||.|.. .-|.||.++.. ..+..+. ...|+.+.+.+.
T Consensus 447 Vi~~~~k---~dg~------~~~~~s~~~y~Qr~GRAGR~G~~-~~G~vi~l~~~~~~~~~~~~~~i-~~~~~~l~s~~~ 515 (997)
T 4a4z_A 447 IFSSIRK---HDGN------GLRELTPGEFTQMAGRAGRRGLD-STGTVIVMAYNSPLSIATFKEVT-MGVPTRLQSQFR 515 (997)
T ss_dssp EESCSEE---EETT------EEEECCHHHHHHHHGGGCCTTTC-SSEEEEEECCSSCCCHHHHHHHH-HSCCCCCCCCCC
T ss_pred EEecccc---ccCc------cCCCCCHHHHhHHhcccccCCCC-cceEEEEecCCCcchHHHHHHHh-cCCCcccccccc
Confidence 6566544 4433 23599999999999999999832 12689998842 2222221 123444444331
Q ss_pred hhhhhhccccccccccccccccccceecccccccccchhhhhhcCCChhhhhhhccccccccccc
Q psy1907 270 QPFRSFGYLGVMQDCRYIGTYLVGFIWHWKNHYIQDQTLVTFMLTHLPTTYIKRKSSEYKVGNGE 334 (1320)
Q Consensus 270 ~~~L~~~~l~~~~~~~~~~~~~~~~il~~~~l~~~d~~~f~~~~~p~~~~~~~~~~~L~~lG~~~ 334 (1320)
.. + +++..++++..+++.++..+.|...+....+.+....|..++..+
T Consensus 516 ~~------------y-----nm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~~l~~~~ 563 (997)
T 4a4z_A 516 LT------------Y-----NMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIKVLQEEL 563 (997)
T ss_dssp CC------------H-----HHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc------------h-----HHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 10 0 122334466667777777777765555444444455555554443
No 27
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.89 E-value=3.8e-23 Score=256.81 Aligned_cols=225 Identities=18% Similarity=0.162 Sum_probs=162.6
Q ss_pred CCHHHHHHHHcCCC--CCCCccEEEEeCCCccCcCcchHHHHH---HHHhh----cCCCCcEEEEecCcCH--HHHHhhc
Q psy1907 1 MTDGTLHREFLSEP--DLASYSVMIIDEAHERTLHTDILFGLV---KDIVR----FRSDLKLLISSATLDA--QKFSEFF 69 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~--~Ls~~s~iVLDEaHeR~l~td~ll~ll---k~l~~----~r~~~qlIl~SATl~~--~~f~~~f 69 (1320)
+|||+|++.+.... .++++++|||||||. .++.++...+. ..+.. ..++.|+++||||++. ..+...+
T Consensus 207 ~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~-l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~ 285 (563)
T 3i5x_A 207 ATPGRLIDVLEKYSNKFFRFVDYKVLDEADR-LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNI 285 (563)
T ss_dssp ECHHHHHHHHHHHHHHHCTTCCEEEEETHHH-HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTT
T ss_pred ECcHHHHHHHHhccccccccceEEEEeCHHH-HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHh
Confidence 59999999886542 489999999999994 44554433322 22222 2347899999999964 4454444
Q ss_pred -CCCCEEEeCC-------cccceeEEEEcC-CccchHHHHHHHHHHHH-hhCCCCCEEEEcCCHHHHHHHHHHHHHHHHh
Q psy1907 70 -DDAPVFRIPG-------RRFPVDIYYTKA-PEADYIDACVVSILQIH-ATQPLGDILVFLTGQEEIETCNEILQDRVRR 139 (1320)
Q Consensus 70 -~~~~vi~i~g-------~~~pV~~~y~~~-~~~~~l~~~i~~v~~i~-~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~ 139 (1320)
.+...+.+.. ....+...+... ...+.....+..+.... ...+.+++|||++|+..++.++..|.+...
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~- 364 (563)
T 3i5x_A 286 MNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK- 364 (563)
T ss_dssp CCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-
T ss_pred cCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc-
Confidence 3333333211 111223333222 22333334444444433 335567899999999999999999987642
Q ss_pred hcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceecc
Q psy1907 140 LGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPI 219 (1320)
Q Consensus 140 l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~pi 219 (1320)
.++.+..+||+|++.+|..+++.|++|..+|||||+++++|||+|+|++||++++ |.
T Consensus 365 -----~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~------------------p~ 421 (563)
T 3i5x_A 365 -----KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGV------------------PS 421 (563)
T ss_dssp -----TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESC------------------CS
T ss_pred -----CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECC------------------CC
Confidence 3678999999999999999999999999999999999999999999999999887 55
Q ss_pred CHhhHHHHhhhcCCCCCCCCceEEEEecCHHHHh
Q psy1907 220 SKASANQRAGVITGFNPLSDFRGCAHVLGEEVLR 253 (1320)
Q Consensus 220 Sk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~~ 253 (1320)
+..+|.||+|||||.|.. |.|+.++++.+..
T Consensus 422 s~~~y~Qr~GRagR~g~~---g~~i~~~~~~e~~ 452 (563)
T 3i5x_A 422 ELANYIHRIGRTARSGKE---GSSVLFICKDELP 452 (563)
T ss_dssp STTHHHHHHTTSSCTTCC---EEEEEEEEGGGHH
T ss_pred chhhhhhhcCccccCCCC---ceEEEEEchhHHH
Confidence 779999999999999865 6899998876544
No 28
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.88 E-value=7.3e-23 Score=255.53 Aligned_cols=225 Identities=18% Similarity=0.168 Sum_probs=163.1
Q ss_pred CCHHHHHHHHcCC--CCCCCccEEEEeCCCccCcCcchHHHHHH---HHhhc----CCCCcEEEEecCcCH--HHHHh-h
Q psy1907 1 MTDGTLHREFLSE--PDLASYSVMIIDEAHERTLHTDILFGLVK---DIVRF----RSDLKLLISSATLDA--QKFSE-F 68 (1320)
Q Consensus 1 ~T~G~LLr~l~~d--~~Ls~~s~iVLDEaHeR~l~td~ll~llk---~l~~~----r~~~qlIl~SATl~~--~~f~~-~ 68 (1320)
+|||+|++.+... ..++++++|||||||. .++.++...+.+ .+... .++.|+++||||++. ..+.. +
T Consensus 156 ~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~-l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~ 234 (579)
T 3sqw_A 156 ATPGRLIDVLEKYSNKFFRFVDYKVLDEADR-LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNI 234 (579)
T ss_dssp ECHHHHHHHHHHHHHHHCTTCCEEEEETHHH-HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTT
T ss_pred ECHHHHHHHHHhccccccccCCEEEEEChHH-hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHH
Confidence 5999999988653 2489999999999994 455554433322 22222 237899999999964 34444 4
Q ss_pred cCCCCEEEeCC-------cccceeEEEEcCC-ccchHHHHHHHHHHHHh-hCCCCCEEEEcCCHHHHHHHHHHHHHHHHh
Q psy1907 69 FDDAPVFRIPG-------RRFPVDIYYTKAP-EADYIDACVVSILQIHA-TQPLGDILVFLTGQEEIETCNEILQDRVRR 139 (1320)
Q Consensus 69 f~~~~vi~i~g-------~~~pV~~~y~~~~-~~~~l~~~i~~v~~i~~-~~~~g~iLVFl~t~~eie~l~~~L~~~~~~ 139 (1320)
+.+...+.+.. ....+...+...+ ........+..+..... ..+.+++|||++|+..++.++..|.+.+.
T Consensus 235 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~- 313 (579)
T 3sqw_A 235 MNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK- 313 (579)
T ss_dssp CCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT-
T ss_pred cCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc-
Confidence 44433333321 1122333332222 22333334444443333 35567899999999999999999987642
Q ss_pred hcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceecc
Q psy1907 140 LGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPI 219 (1320)
Q Consensus 140 l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~pi 219 (1320)
.++.+..+||+|++.+|.++++.|+.|..+|||||+++++|||+|+|++||++++ |.
T Consensus 314 -----~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~------------------p~ 370 (579)
T 3sqw_A 314 -----KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGV------------------PS 370 (579)
T ss_dssp -----TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESC------------------CS
T ss_pred -----CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCC------------------CC
Confidence 3678999999999999999999999999999999999999999999999999887 55
Q ss_pred CHhhHHHHhhhcCCCCCCCCceEEEEecCHHHHh
Q psy1907 220 SKASANQRAGVITGFNPLSDFRGCAHVLGEEVLR 253 (1320)
Q Consensus 220 Sk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~~ 253 (1320)
+..+|.||+|||||.|.. |.|+.++++++..
T Consensus 371 s~~~y~Qr~GRagR~g~~---g~~i~~~~~~e~~ 401 (579)
T 3sqw_A 371 ELANYIHRIGRTARSGKE---GSSVLFICKDELP 401 (579)
T ss_dssp STTHHHHHHTTSSCTTCC---EEEEEEEEGGGHH
T ss_pred CHHHhhhhccccccCCCC---ceEEEEEcccHHH
Confidence 779999999999999875 6899999876543
No 29
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.88 E-value=8.3e-23 Score=254.89 Aligned_cols=225 Identities=14% Similarity=0.118 Sum_probs=161.0
Q ss_pred CCHHHHH------HHHcCCCCCCCccEEEEeCCCccCcC-cchHH--HHHHHHhhcCCCCcEEEEecCcCHH---HHHhh
Q psy1907 1 MTDGTLH------REFLSEPDLASYSVMIIDEAHERTLH-TDILF--GLVKDIVRFRSDLKLLISSATLDAQ---KFSEF 68 (1320)
Q Consensus 1 ~T~G~LL------r~l~~d~~Ls~~s~iVLDEaHeR~l~-td~ll--~llk~l~~~r~~~qlIl~SATl~~~---~f~~~ 68 (1320)
+||++|. +.+.....+.++++|||||||..+-. -||-. ..+..+....++.++|+||||++.. .+.++
T Consensus 142 ~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~ 221 (591)
T 2v1x_A 142 VTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKI 221 (591)
T ss_dssp ECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHH
T ss_pred EChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHH
Confidence 4888764 33332223789999999999963311 11211 1122333456778999999999763 45666
Q ss_pred cCCCCEEEeCCcccceeEEEEcCCccchHHHHHHHHHHHHhh-CCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCe
Q psy1907 69 FDDAPVFRIPGRRFPVDIYYTKAPEADYIDACVVSILQIHAT-QPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKEL 147 (1320)
Q Consensus 69 f~~~~vi~i~g~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~-~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~ 147 (1320)
++......+........+.|...+........+..+..+... .+++.+|||++|+++++.++..|.+. ++
T Consensus 222 l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~---------g~ 292 (591)
T 2v1x_A 222 LCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL---------GI 292 (591)
T ss_dssp TTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT---------TC
T ss_pred hCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC---------CC
Confidence 654332222222222223333222222223334444444433 34678999999999999999999873 77
Q ss_pred EEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHH
Q psy1907 148 IILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQR 227 (1320)
Q Consensus 148 ~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR 227 (1320)
.+.++||+|++++|.++++.|..|..+|||||+++++|||+|+|++||++++ |-|.++|.||
T Consensus 293 ~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~------------------p~s~~~y~Qr 354 (591)
T 2v1x_A 293 HAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSM------------------SKSMENYYQE 354 (591)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSC------------------CSSHHHHHHH
T ss_pred CEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCC------------------CCCHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999987 5578999999
Q ss_pred hhhcCCCCCCCCceEEEEecCHHHHhhc
Q psy1907 228 AGVITGFNPLSDFRGCAHVLGEEVLRGC 255 (1320)
Q Consensus 228 ~GRAGR~g~g~~fg~~~~L~~~~~~~~l 255 (1320)
+|||||.|.. |.|+.+|+..+...+
T Consensus 355 ~GRaGR~G~~---g~~i~l~~~~D~~~~ 379 (591)
T 2v1x_A 355 SGRAGRDDMK---ADCILYYGFGDIFRI 379 (591)
T ss_dssp HTTSCTTSSC---EEEEEEECHHHHHHH
T ss_pred hccCCcCCCC---ceEEEEEChHHHHHH
Confidence 9999999865 699999998877654
No 30
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.88 E-value=8.8e-24 Score=249.07 Aligned_cols=221 Identities=14% Similarity=0.269 Sum_probs=56.5
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH---HHHHhhcCCCCEEE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA---QKFSEFFDDAPVFR 76 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~---~~f~~~f~~~~vi~ 76 (1320)
+|||+|++.+..... +.++++||+||||. ..+.++...+.+.+...+++.|+++||||++. +.+..++.++..+.
T Consensus 144 ~T~~~l~~~~~~~~~~~~~~~~vIiDEah~-~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 222 (394)
T 1fuu_A 144 GTPGRVFDNIQRRRFRTDKIKMFILDEADE-MLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRIL 222 (394)
T ss_dssp ECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEE
T ss_pred ECHHHHHHHHHhCCcchhhCcEEEEEChHH-hhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEE
Confidence 599999999887665 89999999999994 34445555555555556778999999999965 33455666554444
Q ss_pred eCCccc---ceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEec
Q psy1907 77 IPGRRF---PVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVY 153 (1320)
Q Consensus 77 i~g~~~---pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH 153 (1320)
+..... .+...+...+..++. ...+..+....+.+++|||++++++++.+++.|.+. ++.+..+|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~~ 290 (394)
T 1fuu_A 223 VKKDELTLEGIKQFYVNVEEEEYK---YECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIY 290 (394)
T ss_dssp ECC-----------------------------------------------------------------------------
T ss_pred ecCccccCCCceEEEEEcCchhhH---HHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHc---------CCeEEEee
Confidence 443222 122333332222211 122233333344678999999999999999999763 67899999
Q ss_pred CCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCC
Q psy1907 154 SNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITG 233 (1320)
Q Consensus 154 ~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR 233 (1320)
|++++.+|..+++.|++|..+|||||+++++|+|+|++++||++++ |.|..+|.||+||+||
T Consensus 291 ~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R 352 (394)
T 1fuu_A 291 SDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDL------------------PANKENYIHRIGRGGR 352 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHcCcccC
Confidence 9999999999999999999999999999999999999999999876 5677899999999999
Q ss_pred CCCCCCceEEEEecCHHHHhhc
Q psy1907 234 FNPLSDFRGCAHVLGEEVLRGC 255 (1320)
Q Consensus 234 ~g~g~~fg~~~~L~~~~~~~~l 255 (1320)
.|.. |.|+.++++++...+
T Consensus 353 ~g~~---g~~~~~~~~~~~~~~ 371 (394)
T 1fuu_A 353 FGRK---GVAINFVTNEDVGAM 371 (394)
T ss_dssp ----------------------
T ss_pred CCCC---ceEEEEEchhHHHHH
Confidence 9764 589999998765544
No 31
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.88 E-value=4.4e-23 Score=248.45 Aligned_cols=204 Identities=19% Similarity=0.191 Sum_probs=158.1
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhc-CCCCEEEeCC
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFF-DDAPVFRIPG 79 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f-~~~~vi~i~g 79 (1320)
+|.|.+.+.+..++.++++++|||||||.++...+...+.++.+. .+++.++|+||||+... +..+. ++.+++.+.+
T Consensus 76 ~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~-~~~~~~~~~~i~~~~~ 153 (431)
T 2v6i_A 76 MCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRV-SMGDAGAIFMTATPPGT-TEAFPPSNSPIIDEET 153 (431)
T ss_dssp EEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HTTSCEEEEEESSCTTC-CCSSCCCSSCCEEEEC
T ss_pred EchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHh-hCCCCcEEEEeCCCCcc-hhhhcCCCCceeeccc
Confidence 478889888888888999999999999987655666677777665 35679999999999653 22222 1233333222
Q ss_pred cccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHH
Q psy1907 80 RRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTD 159 (1320)
Q Consensus 80 ~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~ 159 (1320)
. .+..++ .. ++..... .+|++|||+|++++++.+++.|.+. ++.+..+||+
T Consensus 154 ~----------~~~~~~-~~----~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~v~~lhg~---- 204 (431)
T 2v6i_A 154 R----------IPDKAW-NS----GYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKA---------GKKVLYLNRK---- 204 (431)
T ss_dssp C----------CCSSCC-SS----CCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHT---------TCCEEEESTT----
T ss_pred c----------CCHHHH-HH----HHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHc---------CCeEEEeCCc----
Confidence 1 111111 11 1111222 3689999999999999999999863 6789999997
Q ss_pred HHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCC
Q psy1907 160 MQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPL 237 (1320)
Q Consensus 160 ~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g 237 (1320)
+|.++++.|++|..+|||||+++|+||||| +.+|||+|.++.+.|| ..++......|.+.++|.||+|||||.|.+
T Consensus 205 ~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~ 280 (431)
T 2v6i_A 205 TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAITPASAAQRRGRIGRNPEK 280 (431)
T ss_dssp THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccCCHHHHHHhhhccCCCCCC
Confidence 577899999999999999999999999999 9999999999988888 677778888999999999999999999864
No 32
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.88 E-value=6e-23 Score=247.93 Aligned_cols=213 Identities=17% Similarity=0.145 Sum_probs=149.1
Q ss_pred CHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhcC-CCCEEEeCCc
Q psy1907 2 TDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFFD-DAPVFRIPGR 80 (1320)
Q Consensus 2 T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~-~~~vi~i~g~ 80 (1320)
+.|.+.+.++....++++++|||||||......++..+++..+.. +++.|+++||||++.. ...+.. +.++..+
T Consensus 83 ~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~~~~~~l~~SAT~~~~-~~~~~~~~~~~~~~--- 157 (440)
T 1yks_A 83 CHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPPGT-SDEFPHSNGEIEDV--- 157 (440)
T ss_dssp EHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTC-CCSSCCCSSCEEEE---
T ss_pred cccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhc-cCCceEEEEeCCCCch-hhhhhhcCCCeeEe---
Confidence 456777777877789999999999999775555566677766553 4678999999999654 222221 2222211
Q ss_pred ccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHH
Q psy1907 81 RFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDM 160 (1320)
Q Consensus 81 ~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~ 160 (1320)
....+.... ...+..+ .. .++++|||+|++++++.+++.|.+. ++.+..+|| ++
T Consensus 158 -------~~~~~~~~~-~~~~~~l----~~-~~~~~lVF~~s~~~a~~l~~~L~~~---------~~~v~~lhg----~~ 211 (440)
T 1yks_A 158 -------QTDIPSEPW-NTGHDWI----LA-DKRPTAWFLPSIRAANVMAASLRKA---------GKSVVVLNR----KT 211 (440)
T ss_dssp -------ECCCCSSCC-SSSCHHH----HH-CCSCEEEECSCHHHHHHHHHHHHHT---------TCCEEECCS----SS
T ss_pred -------eeccChHHH-HHHHHHH----Hh-cCCCEEEEeCCHHHHHHHHHHHHHc---------CCCEEEecc----hh
Confidence 111111111 1111111 11 2578999999999999999999873 678999999 46
Q ss_pred HHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccc-cCCCCccccceeccCHhhHHHHhhhcCCCCCCCC
Q psy1907 161 QTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNF-NSRTGMESLTVVPISKASANQRAGVITGFNPLSD 239 (1320)
Q Consensus 161 r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~y-d~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~ 239 (1320)
|.++++.|++|..+||||||++|+||||| +++|||+|....+.| +...++......|.+.++|.||+|||||.|...
T Consensus 212 R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~- 289 (440)
T 1yks_A 212 FEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRD- 289 (440)
T ss_dssp CC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCC-
T ss_pred HHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCC-
Confidence 88899999999999999999999999999 999999999777665 444566667788999999999999999984211
Q ss_pred ceEEEEecC
Q psy1907 240 FRGCAHVLG 248 (1320)
Q Consensus 240 fg~~~~L~~ 248 (1320)
|.||.+++
T Consensus 290 -g~~~~l~~ 297 (440)
T 1yks_A 290 -GDSYYYSE 297 (440)
T ss_dssp -CEEEEECS
T ss_pred -ceEEEEec
Confidence 48999973
No 33
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.88 E-value=2e-22 Score=232.11 Aligned_cols=207 Identities=14% Similarity=0.142 Sum_probs=158.4
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHH---HHHhhcCCCCEEE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQ---KFSEFFDDAPVFR 76 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~---~f~~~f~~~~vi~ 76 (1320)
+|||+|++.+..... +.++++||+||||. ..+.++...+...+...++..++++||||++.. .+..|+.+...+.
T Consensus 111 ~T~~~l~~~~~~~~~~~~~~~~iViDEah~-~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~ 189 (337)
T 2z0m_A 111 ATPGRLLDLWSKGVIDLSSFEIVIIDEADL-MFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIE 189 (337)
T ss_dssp ECHHHHHHHHHTTSCCGGGCSEEEEESHHH-HHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEE
T ss_pred ECHHHHHHHHHcCCcchhhCcEEEEEChHH-hhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeee
Confidence 599999998877654 89999999999994 333344444444444456678899999999653 4667777665554
Q ss_pred eCCcccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCC
Q psy1907 77 IPGRRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNL 156 (1320)
Q Consensus 77 i~g~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l 156 (1320)
......++...+...+... ... .........+++|||+++.++++.+++.|. .+..+||++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~-------------~~~~~~~~~ 250 (337)
T 2z0m_A 190 ACIGLANVEHKFVHVKDDW--RSK----VQALRENKDKGVIVFVRTRNRVAKLVRLFD-------------NAIELRGDL 250 (337)
T ss_dssp CSGGGGGEEEEEEECSSSS--HHH----HHHHHTCCCSSEEEECSCHHHHHHHHTTCT-------------TEEEECTTS
T ss_pred cccccCCceEEEEEeChHH--HHH----HHHHHhCCCCcEEEEEcCHHHHHHHHHHhh-------------hhhhhcCCC
Confidence 4433444555554443322 111 133344557889999999999998877664 267899999
Q ss_pred CHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCC
Q psy1907 157 PTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNP 236 (1320)
Q Consensus 157 ~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~ 236 (1320)
++.+|.++++.|++|..+|||||+++++|+|+|++++||+++. |.|..+|.||+|||||.|.
T Consensus 251 ~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~------------------~~s~~~~~Q~~GR~gR~g~ 312 (337)
T 2z0m_A 251 PQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDA------------------PQDLRTYIHRIGRTGRMGR 312 (337)
T ss_dssp CHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSC------------------CSSHHHHHHHHTTBCGGGC
T ss_pred CHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecC------------------CCCHHHhhHhcCccccCCC
Confidence 9999999999999999999999999999999999999999876 5678999999999999987
Q ss_pred CCCceEEEEecC
Q psy1907 237 LSDFRGCAHVLG 248 (1320)
Q Consensus 237 g~~fg~~~~L~~ 248 (1320)
. |.|+.++.
T Consensus 313 ~---g~~~~~~~ 321 (337)
T 2z0m_A 313 K---GEAITFIL 321 (337)
T ss_dssp C---EEEEEEES
T ss_pred C---ceEEEEEe
Confidence 5 68888877
No 34
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.87 E-value=1.3e-22 Score=252.64 Aligned_cols=211 Identities=19% Similarity=0.169 Sum_probs=142.3
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhcCCCCEEEeCCc
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFFDDAPVFRIPGR 80 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~~~~vi~i~g~ 80 (1320)
+|||+|++. ..-.++++++|||||||.++...+..+..+...........+++||||++.. +. +..+.+..+.-.
T Consensus 303 ~TPGrLl~~--~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~-i~--~~~p~i~~v~~~ 377 (666)
T 3o8b_A 303 STYGKFLAD--GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGS-VT--VPHPNIEEVALS 377 (666)
T ss_dssp EEHHHHHHT--TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTC-CC--CCCTTEEEEECB
T ss_pred ECcHHHHhC--CCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcc-cc--cCCcceEEEeec
Confidence 599998531 1223788999999999976554444344333333322233378889999652 11 111112111100
Q ss_pred ccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHH
Q psy1907 81 RFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDM 160 (1320)
Q Consensus 81 ~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~ 160 (1320)
+.-.+.+.. .... .....++++|||++|+++++.+++.|.+. ++.+.++||+|++++
T Consensus 378 -~~~~i~~~~--~~~~-----------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~---------g~~v~~lHG~l~q~e 434 (666)
T 3o8b_A 378 -NTGEIPFYG--KAIP-----------IEAIRGGRHLIFCHSKKKCDELAAKLSGL---------GINAVAYYRGLDVSV 434 (666)
T ss_dssp -SCSSEEETT--EEEC-----------GGGSSSSEEEEECSCHHHHHHHHHHHHTT---------TCCEEEECTTSCGGG
T ss_pred -ccchhHHHH--hhhh-----------hhhccCCcEEEEeCCHHHHHHHHHHHHhC---------CCcEEEecCCCCHHH
Confidence 000011100 0000 11224789999999999999999999863 678999999999875
Q ss_pred HHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCcccc----ccCCCCccccceeccCHhhHHHHhhhcCCCCC
Q psy1907 161 QTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNN----FNSRTGMESLTVVPISKASANQRAGVITGFNP 236 (1320)
Q Consensus 161 r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~----yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~ 236 (1320)
++.+..+||||||++|+||||| |++|||+|+.+..+ |||+.|+..+ ..|.|.++|.||+|||||.++
T Consensus 435 -------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~-~~P~s~~syiQRiGRtGRg~~ 505 (666)
T 3o8b_A 435 -------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETT-TVPQDAVSRSQRRGRTGRGRR 505 (666)
T ss_dssp -------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEE-EEECBHHHHHHHHTTBCSSSC
T ss_pred -------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccc-cCcCCHHHHHHHhccCCCCCC
Confidence 3456679999999999999997 99999999866443 6677887654 689999999999999999444
Q ss_pred CCCceEEEEecCHHHHh
Q psy1907 237 LSDFRGCAHVLGEEVLR 253 (1320)
Q Consensus 237 g~~fg~~~~L~~~~~~~ 253 (1320)
|. |.|+++++..
T Consensus 506 ----G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 506 ----GI-YRFVTPGERP 517 (666)
T ss_dssp ----EE-EEESCCCCBC
T ss_pred ----CE-EEEEecchhh
Confidence 47 8899876543
No 35
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.87 E-value=2.8e-22 Score=252.18 Aligned_cols=235 Identities=15% Similarity=0.153 Sum_probs=164.8
Q ss_pred CCCCccEEEEeCCCccCcCcchHHHHHHHHhhcC-CCCcEEEEecCcC-HHHHHhhcCCCCEEEeCCcccceeEEEEcCC
Q psy1907 15 DLASYSVMIIDEAHERTLHTDILFGLVKDIVRFR-SDLKLLISSATLD-AQKFSEFFDDAPVFRIPGRRFPVDIYYTKAP 92 (1320)
Q Consensus 15 ~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r-~~~qlIl~SATl~-~~~f~~~f~~~~vi~i~g~~~pV~~~y~~~~ 92 (1320)
.+..|++|||||||.+ .+.++...+.+.+...+ ++.+++++|||.+ ...+....+....+....+..|. .+....
T Consensus 236 l~~~v~lvVIDEaH~l-~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~~v~~~~r~~~l--~~~~~~ 312 (677)
T 3rc3_A 236 VTTPYEVAVIDEIQMI-RDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPI--SVLDHA 312 (677)
T ss_dssp SSSCEEEEEECSGGGG-GCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCEEEEECCCSSCE--EECSSC
T ss_pred hcccCCEEEEecceec-CCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCceEEEEeeecchH--HHHHHH
Confidence 4678999999999965 78888888887777766 6789999999973 23344443322122111222222 221111
Q ss_pred ccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCC--
Q psy1907 93 EADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPP-- 170 (1320)
Q Consensus 93 ~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~-- 170 (1320)
. . ......+|+ +||++++++|+.++..|.+. ++.+.++||+|++++|..+++.|.+
T Consensus 313 l-~-----------~l~~~~~g~-iIf~~s~~~ie~la~~L~~~---------g~~v~~lHG~L~~~~R~~~~~~F~~~~ 370 (677)
T 3rc3_A 313 L-E-----------SLDNLRPGD-CIVCFSKNDIYSVSRQIEIR---------GLESAVIYGSLPPGTKLAQAKKFNDPN 370 (677)
T ss_dssp C-C-----------SGGGCCTTE-EEECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHCTT
T ss_pred H-H-----------HHHhcCCCC-EEEEcCHHHHHHHHHHHHhc---------CCCeeeeeccCCHHHHHHHHHHHHccC
Confidence 0 0 011223454 67788899999999999873 6789999999999999999988887
Q ss_pred CCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHH
Q psy1907 171 NARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 171 g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~ 250 (1320)
|.++||||||++++|||| +|++|||+|+++. .||+..+. ...|+|.++|.||+|||||.|....-|.||.+++++
T Consensus 371 g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~---~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d 445 (677)
T 3rc3_A 371 DPCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGER---ELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHED 445 (677)
T ss_dssp SSCCEEEECGGGGSSCCC-CBSEEEESCSBC---------------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTH
T ss_pred CCeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCcc---ccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecch
Confidence 999999999999999999 9999999999887 78887543 367999999999999999998532236899999876
Q ss_pred --HHhhcccccCCccccCCcchhhhhhcccc
Q psy1907 251 --VLRGCAHVLGEEVLRPEVSQPFRSFGYLG 279 (1320)
Q Consensus 251 --~~~~l~~~~~pei~~~~l~~~~L~~~~l~ 279 (1320)
.+..+.....|++....+....+.++..+
T Consensus 446 ~~~~~~~~~~~~~~i~~~~l~p~~~~l~~~~ 476 (677)
T 3rc3_A 446 LSLLKEILKRPVDPIRAAGLHPTAEQIEMFA 476 (677)
T ss_dssp HHHHHHHHHSCCCCCCCEEECCCHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhccCCChHHHHHHHh
Confidence 66667777777777766655444444433
No 36
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.87 E-value=3.5e-22 Score=246.30 Aligned_cols=220 Identities=14% Similarity=0.153 Sum_probs=160.5
Q ss_pred CCHHHHHHHHcCCC-CCCCccEEEEeCCCccCcC-cch--HHHHHHHHhhcCCCCcEEEEecCcCHH---HHHhhcC-CC
Q psy1907 1 MTDGTLHREFLSEP-DLASYSVMIIDEAHERTLH-TDI--LFGLVKDIVRFRSDLKLLISSATLDAQ---KFSEFFD-DA 72 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~-~Ls~~s~iVLDEaHeR~l~-td~--ll~llk~l~~~r~~~qlIl~SATl~~~---~f~~~f~-~~ 72 (1320)
+||++|+.....+. ...++++|||||||..+-. .|+ ....+..+....++.+++++|||++.. .+.++++ +.
T Consensus 121 ~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~ 200 (523)
T 1oyw_A 121 IAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLND 200 (523)
T ss_dssp ECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCS
T ss_pred ECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCC
Confidence 48888852211111 1378999999999964311 122 222333344455778999999999764 3455554 44
Q ss_pred CEEEeCCcccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEe
Q psy1907 73 PVFRIPGRRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPV 152 (1320)
Q Consensus 73 ~vi~i~g~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~L 152 (1320)
+.+.+.+...| .+.|...+..+..+.+ ..+....+.+++|||++|+++++.+++.|.+. ++.+.++
T Consensus 201 ~~~~~~~~~r~-~l~~~v~~~~~~~~~l----~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~---------g~~~~~~ 266 (523)
T 1oyw_A 201 PLIQISSFDRP-NIRYMLMEKFKPLDQL----MRYVQEQRGKSGIIYCNSRAKVEDTAARLQSK---------GISAAAY 266 (523)
T ss_dssp CEEEECCCCCT-TEEEEEEECSSHHHHH----HHHHHHTTTCCEEEECSSHHHHHHHHHHHHHT---------TCCEEEE
T ss_pred CeEEeCCCCCC-ceEEEEEeCCCHHHHH----HHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHC---------CCCEEEe
Confidence 55555543333 2333332333444433 33333345678999999999999999999873 6789999
Q ss_pred cCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcC
Q psy1907 153 YSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVIT 232 (1320)
Q Consensus 153 H~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAG 232 (1320)
||+|++++|..+++.|..|..+|||||+++++|||+|+|++||++|+ |.|.++|.||+||||
T Consensus 267 h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Qr~GRaG 328 (523)
T 1oyw_A 267 HAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI------------------PRNIESYYQETGRAG 328 (523)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSC------------------CSSHHHHHHHHTTSC
T ss_pred cCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECC------------------CCCHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999887 568899999999999
Q ss_pred CCCCCCCceEEEEecCHHHHhhc
Q psy1907 233 GFNPLSDFRGCAHVLGEEVLRGC 255 (1320)
Q Consensus 233 R~g~g~~fg~~~~L~~~~~~~~l 255 (1320)
|.|.. |.|+.+++.++...+
T Consensus 329 R~g~~---~~~~l~~~~~d~~~~ 348 (523)
T 1oyw_A 329 RDGLP---AEAMLFYDPADMAWL 348 (523)
T ss_dssp TTSSC---EEEEEEECHHHHHHH
T ss_pred CCCCC---ceEEEEeCHHHHHHH
Confidence 99865 699999998876544
No 37
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.87 E-value=4.4e-22 Score=251.01 Aligned_cols=213 Identities=18% Similarity=0.204 Sum_probs=159.6
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhcC-CCCEEEeCC
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFFD-DAPVFRIPG 79 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~-~~~vi~i~g 79 (1320)
+|.|.+.+.++.++.++++++|||||||..+...+..+++++.+.. +++.|+|+||||++.. +..+.. +.++..+..
T Consensus 315 l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~-~~~~~vl~~SAT~~~~-i~~~~~~~~~i~~v~~ 392 (673)
T 2wv9_A 315 MCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVE-AGEAAAIFMTATPPGT-SDPFPDTNSPVHDVSS 392 (673)
T ss_dssp EEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTC-CCSSCCCSSCEEEEEC
T ss_pred HHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhcc-ccCCcEEEEcCCCChh-hhhhcccCCceEEEee
Confidence 3567888888888889999999999999876666677777777653 3678999999999643 222221 233333222
Q ss_pred cccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHH
Q psy1907 80 RRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTD 159 (1320)
Q Consensus 80 ~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~ 159 (1320)
. .+...+ ...+.. + . ..++++|||+|++++++.+++.|.+. ++.+..+||.
T Consensus 393 ~----------~~~~~~-~~~l~~---l-~-~~~~~~lVF~~s~~~~e~la~~L~~~---------g~~v~~lHg~---- 443 (673)
T 2wv9_A 393 E----------IPDRAW-SSGFEW---I-T-DYAGKTVWFVASVKMSNEIAQCLQRA---------GKRVIQLNRK---- 443 (673)
T ss_dssp C----------CCSSCC-SSCCHH---H-H-SCCSCEEEECSSHHHHHHHHHHHHTT---------TCCEEEECSS----
T ss_pred e----------cCHHHH-HHHHHH---H-H-hCCCCEEEEECCHHHHHHHHHHHHhC---------CCeEEEeChH----
Confidence 1 111111 111111 1 1 24689999999999999999999763 6789999993
Q ss_pred HHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccc--cccCCCCccccceeccCHhhHHHHhhhcCCC-CC
Q psy1907 160 MQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQN--NFNSRTGMESLTVVPISKASANQRAGVITGF-NP 236 (1320)
Q Consensus 160 ~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~--~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~-g~ 236 (1320)
+|.++++.|++|..+||||||++|+||||| +++|||+|....+ .||...++..+...|.|.++|.||+|||||. |.
T Consensus 444 eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~ 522 (673)
T 2wv9_A 444 SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQ 522 (673)
T ss_dssp SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSC
T ss_pred HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCC
Confidence 788999999999999999999999999999 9999999975543 3666656666677899999999999999999 33
Q ss_pred CCCceEEEEecC
Q psy1907 237 LSDFRGCAHVLG 248 (1320)
Q Consensus 237 g~~fg~~~~L~~ 248 (1320)
. |.||.++.
T Consensus 523 ~---G~ai~l~~ 531 (673)
T 2wv9_A 523 I---GDEYHYGG 531 (673)
T ss_dssp C---CEEEEECS
T ss_pred C---CEEEEEEe
Confidence 3 58888863
No 38
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.86 E-value=4.2e-22 Score=261.46 Aligned_cols=238 Identities=16% Similarity=0.119 Sum_probs=170.1
Q ss_pred CCHHHHHHHHcCCC-CCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCc-CHHHHHhhcC-----CCC
Q psy1907 1 MTDGTLHREFLSEP-DLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL-DAQKFSEFFD-----DAP 73 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~-~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl-~~~~f~~~f~-----~~~ 73 (1320)
||||+|.+.+..+. .++++++||||||| +..+.+....+-..+...+++.|+|+||||+ +...|++|++ ...
T Consensus 174 ~Tpe~L~~~L~~~~~~l~~l~lVViDEaH-~l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~ 252 (1010)
T 2xgj_A 174 MTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCH 252 (1010)
T ss_dssp EEHHHHHHHHHHTCTTGGGEEEEEEETGG-GGGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEE
T ss_pred EcHHHHHHHHHcCcchhhcCCEEEEechh-hhcccchhHHHHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeE
Confidence 69999998887654 48999999999999 3444444433444445567889999999999 7778888874 344
Q ss_pred EEEeCCcccceeEEEEcCCc----------cc-----hH------------------------------------HHHHH
Q psy1907 74 VFRIPGRRFPVDIYYTKAPE----------AD-----YI------------------------------------DACVV 102 (1320)
Q Consensus 74 vi~i~g~~~pV~~~y~~~~~----------~~-----~l------------------------------------~~~i~ 102 (1320)
++..+++..|+..++...+. .. +. ...+.
T Consensus 253 vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~ 332 (1010)
T 2xgj_A 253 IVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIY 332 (1010)
T ss_dssp EEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHH
T ss_pred EEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHH
Confidence 55567777787766543210 00 00 11122
Q ss_pred HHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHH------------------HhhcCCCC------------CeEEEEe
Q psy1907 103 SILQIHATQPLGDILVFLTGQEEIETCNEILQDRV------------------RRLGSKIK------------ELIILPV 152 (1320)
Q Consensus 103 ~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~------------------~~l~~~~~------------~~~v~~L 152 (1320)
.++......+.+++|||++++..++.++..|.... ..+..... ...+..+
T Consensus 333 ~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~ 412 (1010)
T 2xgj_A 333 KIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIH 412 (1010)
T ss_dssp HHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEE
T ss_pred HHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEE
Confidence 23333333345689999999999999998885410 00111000 1238889
Q ss_pred cCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcC
Q psy1907 153 YSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVIT 232 (1320)
Q Consensus 153 H~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAG 232 (1320)
||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+. ...||... ..|+|.++|.||+||||
T Consensus 413 Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd~~~------~rp~s~~~y~Qr~GRAG 482 (1010)
T 2xgj_A 413 HSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQQ------FRWVSGGEYIQMSGRAG 482 (1010)
T ss_dssp STTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----SEEECSSC------EEECCHHHHHHHHTTBC
T ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----CcccCCcC------CccCCHHHHhHhhhhcc
Confidence 999999999999999999999999999999999999999999983 22344322 35899999999999999
Q ss_pred CCCCCCCceEEEEecCHH
Q psy1907 233 GFNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 233 R~g~g~~fg~~~~L~~~~ 250 (1320)
|.|.+ ..|.||.++++.
T Consensus 483 R~G~d-~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 483 RRGLD-DRGIVIMMIDEK 499 (1010)
T ss_dssp CTTTC-SSEEEEEEECSC
T ss_pred cCCCC-CceEEEEEECCC
Confidence 99863 236999998743
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.86 E-value=1.4e-21 Score=267.21 Aligned_cols=261 Identities=10% Similarity=0.078 Sum_probs=178.1
Q ss_pred CCHHHHHHHHcC---CCCCCCccEEEEeCCCc----cCcCcchHHHHHHHHh-hcCCCCcEEEEecCc-CHHHHHhhcCC
Q psy1907 1 MTDGTLHREFLS---EPDLASYSVMIIDEAHE----RTLHTDILFGLVKDIV-RFRSDLKLLISSATL-DAQKFSEFFDD 71 (1320)
Q Consensus 1 ~T~G~LLr~l~~---d~~Ls~~s~iVLDEaHe----R~l~td~ll~llk~l~-~~r~~~qlIl~SATl-~~~~f~~~f~~ 71 (1320)
||||++...+.+ ...++++++||+||+|. |+.....++..++.+. ...++.|+|+||||+ |++.+++|++.
T Consensus 1026 ~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~ 1105 (1724)
T 4f92_B 1026 STPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGC 1105 (1724)
T ss_dssp ECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTC
T ss_pred ECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCC
Confidence 699997554433 22388999999999993 3222333344444443 356789999999999 89999999974
Q ss_pred --CCEEEeCCc--ccceeEEEEcCCccchHH---HHHHHHH-HHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCC
Q psy1907 72 --APVFRIPGR--RFPVDIYYTKAPEADYID---ACVVSIL-QIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSK 143 (1320)
Q Consensus 72 --~~vi~i~g~--~~pV~~~y~~~~~~~~l~---~~i~~v~-~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~ 143 (1320)
..++.+... ..|.+.+....+..++.. .....+. .+....+.+.+|||++|+..++.++..|...+......
T Consensus 1106 ~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~ 1185 (1724)
T 4f92_B 1106 SATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQR 1185 (1724)
T ss_dssp CSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCT
T ss_pred CCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccch
Confidence 345555543 344444433222222211 1111122 22333456789999999999999998886654321100
Q ss_pred -------------------------CCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCC
Q psy1907 144 -------------------------IKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPG 198 (1320)
Q Consensus 144 -------------------------~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g 198 (1320)
.....|..+||||++++|..+++.|++|.++|||||+++++|||+|++++||...
T Consensus 1186 ~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~ 1265 (1724)
T 4f92_B 1186 QRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDT 1265 (1724)
T ss_dssp TTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECS
T ss_pred hhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecC
Confidence 0022488899999999999999999999999999999999999999999999642
Q ss_pred CCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHHHhhccc-ccCCccccCCcch
Q psy1907 199 FCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEVLRGCAH-VLGEEVLRPEVSQ 270 (1320)
Q Consensus 199 ~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~~~l~~-~~~pei~~~~l~~ 270 (1320)
..||...+ ...|.+..+|.||+|||||.|.+ ..|.|+.+..+.+...+.. ...|+..++.|..
T Consensus 1266 ----~~~dg~~~----~~~~~s~~~~~Qm~GRAGR~g~d-~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~ 1329 (1724)
T 4f92_B 1266 ----QYYNGKIH----AYVDYPIYDVLQMVGHANRPLQD-DEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDH 1329 (1724)
T ss_dssp ----EEEETTTT----EEEECCHHHHHHHHTTBCCTTTC-SCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGG
T ss_pred ----ccccCccc----ccCCCCHHHHHHhhccccCCCCC-CceEEEEEecchHHHHHHHHhCCCCceeeeccc
Confidence 34655433 45689999999999999999864 3478998887654443322 2445566666643
No 40
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.85 E-value=1.6e-22 Score=248.49 Aligned_cols=222 Identities=14% Similarity=0.178 Sum_probs=144.9
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcC--HHHHHh-hcCCCCEEE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLD--AQKFSE-FFDDAPVFR 76 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~--~~~f~~-~f~~~~vi~ 76 (1320)
+|||+|++.+..... ++++++|||||||...-..++...+.+.....+++.|+|+||||++ .+.+.. ++.+...+.
T Consensus 241 ~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~ 320 (508)
T 3fho_A 241 GTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIR 320 (508)
T ss_dssp ECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEEC
T ss_pred ECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEE
Confidence 599999999887765 8999999999999655435555555555555677899999999995 445544 444544454
Q ss_pred eCCcccc---eeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEec
Q psy1907 77 IPGRRFP---VDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVY 153 (1320)
Q Consensus 77 i~g~~~p---V~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH 153 (1320)
+.....+ +...+....... .....+..+......+++|||++++.+++.++..|.+ .+..+..+|
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~---------~~~~v~~~h 388 (508)
T 3fho_A 321 LKTEELSVEGIKQLYMDCQSEE---HKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTA---------DGHTVACLT 388 (508)
T ss_dssp CCCCC----CCCCEEEEC--CH---HHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTT---------TTCCCCEEC
T ss_pred eccccCCcccceEEEEECCchH---HHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHh---------CCCcEEEEe
Confidence 4443332 233333332222 2233344445555578999999999999999998875 367789999
Q ss_pred CCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCC
Q psy1907 154 SNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITG 233 (1320)
Q Consensus 154 ~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR 233 (1320)
|++++.+|..+++.|++|..+|||||+++++|||+|++++||+++.+.... .+.|..+|.||+|||||
T Consensus 389 g~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~------------~~~s~~~~~Qr~GRagR 456 (508)
T 3fho_A 389 GNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQA------------GRPDPQTYLHRIGRTGR 456 (508)
T ss_dssp -----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----------------CTHHHHHTTSCCC-
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCccc------------CCCCHHHHHHHhhhcCC
Confidence 999999999999999999999999999999999999999999988743221 13577899999999999
Q ss_pred CCCCCCceEEEEecCH
Q psy1907 234 FNPLSDFRGCAHVLGE 249 (1320)
Q Consensus 234 ~g~g~~fg~~~~L~~~ 249 (1320)
.|.. |.|+.+++.
T Consensus 457 ~g~~---g~~i~l~~~ 469 (508)
T 3fho_A 457 FGRV---GVSINFVHD 469 (508)
T ss_dssp -------CEEEEEECT
T ss_pred CCCC---cEEEEEEeC
Confidence 9864 589988874
No 41
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.85 E-value=3.7e-22 Score=248.69 Aligned_cols=175 Identities=25% Similarity=0.374 Sum_probs=154.2
Q ss_pred HHHHhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCC
Q psy1907 662 IEETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGV 741 (1320)
Q Consensus 662 i~~~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~ 741 (1320)
..+.|..||++.++++|+.++.++++++++|+||||||+++|+++++.| .+++|++|+|..|..+++++++++|.
T Consensus 209 ~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g-----~~vLVl~PTReLA~Qia~~l~~~~g~ 283 (666)
T 3o8b_A 209 SMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQG-----YKVLVLNPSVAATLGFGAYMSKAHGI 283 (666)
T ss_dssp HHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTT-----CCEEEEESCHHHHHHHHHHHHHHHSC
T ss_pred hhhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCC-----CeEEEEcchHHHHHHHHHHHHHHhCC
Confidence 3566889999999999999999999999999999999999999999853 36999999999999999999999999
Q ss_pred CCCCeeeEEeecCccCCCCccEEEEccHHHHHHHhcCC--CCCCccEEEEcccccc------------------------
Q psy1907 742 KLGCEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEP--DLASYSVMIIDEAHPK------------------------ 795 (1320)
Q Consensus 742 ~lG~~VGY~irfe~~~s~~T~i~y~TdG~Llrel~~dp--~L~~ys~iIiDE~HER------------------------ 795 (1320)
.+|..+||.. ...++.|+|+|.|.|++ ++ .+.++++|||||||++
T Consensus 284 ~vg~~vG~~~-----~~~~~~IlV~TPGrLl~----~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~lli 354 (666)
T 3o8b_A 284 DPNIRTGVRT-----ITTGAPVTYSTYGKFLA----DGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVV 354 (666)
T ss_dssp CCEEECSSCE-----ECCCCSEEEEEHHHHHH----TTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEE
T ss_pred CeeEEECcEe-----ccCCCCEEEECcHHHHh----CCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEE
Confidence 9888888765 35678999999999853 44 5667999999999977
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 355 l~SAT~~~~i~~~~p~i~~v~~~~~~~i~~~~~~~~l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e 434 (666)
T 3o8b_A 355 LATATPPGSVTVPHPNIEEVALSNTGEIPFYGKAIPIEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV 434 (666)
T ss_dssp EEESSCTTCCCCCCTTEEEEECBSCSSEEETTEEECGGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG
T ss_pred EECCCCCcccccCCcceEEEeecccchhHHHHhhhhhhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH
Confidence
Q ss_pred -----------------------eEEEcCCccceee----ccCCCCcceeEEEEecHhhHHHHhcccCCccCCeEEEecc
Q psy1907 796 -----------------------VYVIDPGFCKQNN----FNSRTGMESLTVVPISKASANQRAGRAGRVAAGKCFRLYT 848 (1320)
Q Consensus 796 -----------------------~~ViD~G~~k~~~----y~~~~~~~~L~~~~iSkasa~QR~GRAGR~~pG~cyrLyt 848 (1320)
.+|||+|+.+..+ |||..|+..+ ..|+|.++..||+|||||..+|+ |.||+
T Consensus 435 r~~~~~~VLVATdVaerGIDIdV~~VI~~Gl~~~~ViNyDydP~~gl~~~-~~P~s~~syiQRiGRtGRg~~G~-i~lvt 512 (666)
T 3o8b_A 435 IPTIGDVVVVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETT-TVPQDAVSRSQRRGRTGRGRRGI-YRFVT 512 (666)
T ss_dssp SCSSSCEEEEECTTHHHHCCCCBSEEEECCEEEEEEEECCCSSSCEEEEE-EEECBHHHHHHHHTTBCSSSCEE-EEESC
T ss_pred HHhCCCcEEEECChHHccCCCCCcEEEecCcccccccccccccccccccc-cCcCCHHHHHHHhccCCCCCCCE-EEEEe
Confidence 5899999999876 6777888754 68999999999999999999999 99999
Q ss_pred hHHh
Q psy1907 849 AWAY 852 (1320)
Q Consensus 849 ~~~~ 852 (1320)
....
T Consensus 513 ~~e~ 516 (666)
T 3o8b_A 513 PGER 516 (666)
T ss_dssp CCCB
T ss_pred cchh
Confidence 7543
No 42
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.85 E-value=7.6e-22 Score=215.24 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=112.1
Q ss_pred EEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHc
Q psy1907 86 IYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIF 165 (1320)
Q Consensus 86 ~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~ 165 (1320)
..+...+..++++.+. .++...+++++|||++|+.+++.++..|.+. ++.+.++||+|++.+|.+++
T Consensus 8 ~~~~~~~~~~k~~~l~----~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~r~~~~ 74 (212)
T 3eaq_A 8 EEAVPAPVRGRLEVLS----DLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDLSQGERERVL 74 (212)
T ss_dssp CEEEECCTTSHHHHHH----HHHHHHCCSCEEEECSSHHHHHHHHHHHHHH---------TCCEEEECSSSCHHHHHHHH
T ss_pred eeEEeCCHHHHHHHHH----HHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHH
Confidence 3444455555555443 3444445789999999999999999999874 67899999999999999999
Q ss_pred CCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEE
Q psy1907 166 LPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAH 245 (1320)
Q Consensus 166 ~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~ 245 (1320)
+.|++|.++||||||++++|||||++++|||+|+ |.+.++|.||+|||||.|.. |.|+.
T Consensus 75 ~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~---g~~~~ 133 (212)
T 3eaq_A 75 GAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRL------------------PDRAEAYQHRSGRTGRAGRG---GRVVL 133 (212)
T ss_dssp HHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSC------------------CSSHHHHHHHHTTBCCCC-----BEEEE
T ss_pred HHHHCCCCeEEEecChhhcCCCCccCcEEEECCC------------------CcCHHHHHHHhcccCCCCCC---CeEEE
Confidence 9999999999999999999999999999999987 56889999999999999865 69999
Q ss_pred ecCHHHH
Q psy1907 246 VLGEEVL 252 (1320)
Q Consensus 246 L~~~~~~ 252 (1320)
++++.+.
T Consensus 134 l~~~~~~ 140 (212)
T 3eaq_A 134 LYGPRER 140 (212)
T ss_dssp EECGGGH
T ss_pred EEchhHH
Confidence 9997764
No 43
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.84 E-value=1.1e-21 Score=249.65 Aligned_cols=114 Identities=13% Similarity=0.129 Sum_probs=66.3
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEe--------cCCCCHHHHHHHcCCCCC-CCeEEEEeCcc
Q psy1907 111 QPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPV--------YSNLPTDMQTKIFLPTPP-NARKVVLATNI 181 (1320)
Q Consensus 111 ~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~L--------H~~l~~~~r~~i~~~~~~-g~~kVlvATdI 181 (1320)
.+.+++|||++++..++.+++.|.+. +....+.+..+ ||+|++++|.++++.|+. |.++|||||++
T Consensus 396 ~~~~~~IIF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v 470 (696)
T 2ykg_A 396 NPETITILFVKTRALVDALKNWIEGN-----PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV 470 (696)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHC-----TTCCSCCEEC-----------------------------CCSCSEEEES
T ss_pred CCCCcEEEEeCcHHHHHHHHHHHHhC-----CCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEech
Confidence 35678999999999999999999873 11122666667 669999999999999998 99999999999
Q ss_pred cccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHHH
Q psy1907 182 AETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEVL 252 (1320)
Q Consensus 182 Ae~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~ 252 (1320)
+++|||||++++||++|+ |.|..+|.||+|| ||.++| .|+.++++.+.
T Consensus 471 ~~~GiDip~v~~VI~~d~------------------p~s~~~~~Qr~GR-GR~~~g----~~~~l~~~~~~ 518 (696)
T 2ykg_A 471 ADEGIDIAQCNLVILYEY------------------VGNVIKMIQTRGR-GRARGS----KCFLLTSNAGV 518 (696)
T ss_dssp SCCC---CCCSEEEEESC------------------C--CCCC----------CCC----EEEEEESCHHH
T ss_pred hhcCCcCccCCEEEEeCC------------------CCCHHHHHHhhcc-CcCCCc----eEEEEecCCCH
Confidence 999999999999999887 4566788999999 999766 89999997765
No 44
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.83 E-value=1.9e-21 Score=232.27 Aligned_cols=209 Identities=13% Similarity=0.068 Sum_probs=146.5
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCC---------ccCcC-cchHHHHHHHHh-hcC-----------CCCcEEEEec
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAH---------ERTLH-TDILFGLVKDIV-RFR-----------SDLKLLISSA 58 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaH---------eR~l~-td~ll~llk~l~-~~r-----------~~~qlIl~SA 58 (1320)
+|||+|++.+.. ..++++++||||||| +|+++ .++....++.+. ..+ ++.|+++|||
T Consensus 123 ~Tp~~l~~~l~~-~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SA 201 (414)
T 3oiy_A 123 FSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSA 201 (414)
T ss_dssp EEHHHHHHCHHH-HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSC
T ss_pred ECHHHHHHHHHH-hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEec
Confidence 599999877653 447799999999999 66666 666555333332 233 7789999999
Q ss_pred CcCH-----HHHHhhcCCCCEEEeCCcccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHH
Q psy1907 59 TLDA-----QKFSEFFDDAPVFRIPGRRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEIL 133 (1320)
Q Consensus 59 Tl~~-----~~f~~~f~~~~vi~i~g~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L 133 (1320)
|+.+ ..+..+++ ..+.........+...|...+. .+.+...+.. .++++|||++++.+++.++..|
T Consensus 202 T~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~---~~~l~~~l~~-----~~~~~lVF~~~~~~~~~l~~~L 272 (414)
T 3oiy_A 202 TAKPRGIRPLLFRDLLN-FTVGRLVSVARNITHVRISSRS---KEKLVELLEI-----FRDGILIFAQTEEEGKELYEYL 272 (414)
T ss_dssp CSSCCSSTTHHHHHHHS-CCSSCCCCCCCSEEEEEESSCC---HHHHHHHHHH-----HCSSEEEEESSHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHhhc-cCcCccccccccchheeeccCH---HHHHHHHHHH-----cCCCEEEEECCHHHHHHHHHHH
Confidence 9522 22333332 1111111222345555555432 2332222222 2478999999999999999999
Q ss_pred HHHHHhhcCCCCCeEEE-EecCCCCHHHHHHHcCCCCCCCeEEEEe----CcccccCCCCCC-ccEEEcCCCCccccccC
Q psy1907 134 QDRVRRLGSKIKELIIL-PVYSNLPTDMQTKIFLPTPPNARKVVLA----TNIAETSLTIDN-IIYVIDPGFCKQNNFNS 207 (1320)
Q Consensus 134 ~~~~~~l~~~~~~~~v~-~LH~~l~~~~r~~i~~~~~~g~~kVlvA----TdIAe~gldIp~-I~~VID~g~~k~~~yd~ 207 (1320)
.+. ++.+. .+||. +|. ++.|++|..+|||| |+++++|||+|+ |++||++|+++.
T Consensus 273 ~~~---------~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~----- 332 (414)
T 3oiy_A 273 KRF---------KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSG----- 332 (414)
T ss_dssp HHT---------TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTT-----
T ss_pred HHc---------CCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCC-----
Confidence 873 67787 89985 333 88999999999999 999999999999 999999887320
Q ss_pred CCCccccceeccCHhhHHHHhhhcCCCCCCC-CceEEEEecCHH
Q psy1907 208 RTGMESLTVVPISKASANQRAGVITGFNPLS-DFRGCAHVLGEE 250 (1320)
Q Consensus 208 ~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~-~fg~~~~L~~~~ 250 (1320)
.|..+|.||+|||||.|.|. .-|.|+.++.+.
T Consensus 333 -----------~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~~ 365 (414)
T 3oiy_A 333 -----------PDVYTYIQASGRSSRILNGVLVKGVSVIFEEDE 365 (414)
T ss_dssp -----------TCHHHHHHHHGGGCCEETTEECCEEEEEECCCH
T ss_pred -----------CCHHHHHHHhCccccCCCCCCcceEEEEEEccH
Confidence 67899999999999998541 126899998644
No 45
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=207.28 Aligned_cols=137 Identities=36% Similarity=0.585 Sum_probs=123.8
Q ss_pred hhhHHHHhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCC---CcEEEEecccHHHHHHHHHHH
Q psy1907 659 KLNIEETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKD---KMKIGCTQPRRVAAMSVSARV 735 (1320)
Q Consensus 659 ~~~i~~~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~---~~~I~~tQPRRvAA~svA~rv 735 (1320)
..++.+.|..||++.++++++.++.++++++|+|+|||||||++++++++.....+ +.+++|++|+|..|.++++++
T Consensus 50 ~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~ 129 (235)
T 3llm_A 50 LQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERV 129 (235)
T ss_dssp HHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999887543322 347999999999999999999
Q ss_pred HHHhCCCCCCeeeEEeecCccCC-CCccEEEEccHHHHHHHhcCCCCCCccEEEEcccccceE
Q psy1907 736 AEEMGVKLGCEVGYAIRFEDCTS-ERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPKVY 797 (1320)
Q Consensus 736 a~e~~~~lG~~VGY~irfe~~~s-~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER~~ 797 (1320)
+.+++..+|..|||++++++... .++.|+++|.|+|++.+.. .|.++++|||||||+|.+
T Consensus 130 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~ 190 (235)
T 3llm_A 130 AFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDI 190 (235)
T ss_dssp HHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCH
T ss_pred HHHhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCc
Confidence 99999999999999999999886 7899999999999999877 499999999999999744
No 46
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.82 E-value=2e-21 Score=222.68 Aligned_cols=202 Identities=11% Similarity=0.046 Sum_probs=140.9
Q ss_pred eeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHH
Q psy1907 84 VDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTK 163 (1320)
Q Consensus 84 V~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~ 163 (1320)
++.+|...+..++++.+... +...+++++|||++|+++++.++..|.+ .++.+.++||+|++.+|.+
T Consensus 3 v~~~~i~~~~~~K~~~L~~l----l~~~~~~~~LVF~~t~~~~~~l~~~L~~---------~g~~~~~lhg~l~~~~r~~ 69 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDL----LYVASPDRAMVFTRTKAETEEIAQGLLR---------LGHPAQALHGDMSQGERER 69 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHH----HHHHCCSSEEEECSSHHHHHHHHHHHHT---------TTCCEEEECSCCCTHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHH----HHhcCCCCEEEEECCHHHHHHHHHHHHh---------CCCCEEEEeCCCCHHHHHH
Confidence 55677777777776654443 3333478999999999999999999976 3788999999999999999
Q ss_pred HcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEE
Q psy1907 164 IFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGC 243 (1320)
Q Consensus 164 i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~ 243 (1320)
+++.|++|.++||||||+|++|||||+|++|||+|+ |.+.++|.||+|||||.|.. |.|
T Consensus 70 ~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~g~~---G~~ 128 (300)
T 3i32_A 70 VMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRM------------------PDRAEAYQHRSGRTGRAGRG---GRV 128 (300)
T ss_dssp HHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSC------------------CSSTTHHHHHHTCCC--------CEE
T ss_pred HHHHhhcCCceEEEEechhhcCccccceeEEEEcCC------------------CCCHHHHHHHccCcCcCCCC---ceE
Confidence 999999999999999999999999999999999987 55778999999999999865 599
Q ss_pred EEecCHHHHhhcc---cccCCccccCCcchhhhhhccccccccccccccccccceecccccccccchhh-----hhhcCC
Q psy1907 244 AHVLGEEVLRGCA---HVLGEEVLRPEVSQPFRSFGYLGVMQDCRYIGTYLVGFIWHWKNHYIQDQTLV-----TFMLTH 315 (1320)
Q Consensus 244 ~~L~~~~~~~~l~---~~~~pei~~~~l~~~~L~~~~l~~~~~~~~~~~~~~~~il~~~~l~~~d~~~f-----~~~~~p 315 (1320)
|.+++.++...+. ......+..... .....+.+..+..++..++.++..++..| .++..|
T Consensus 129 i~l~~~~e~~~~~~ie~~~~~~~~~~~~------------~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~ 196 (300)
T 3i32_A 129 VLLYGPRERRDVEALERAVGRRFKRVNP------------PTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEG 196 (300)
T ss_dssp EEEECSSTHHHHHHHHHHHTCCCEECCC------------CCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHT
T ss_pred EEEeChHHHHHHHHHHHHhCCcceEeCC------------CCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcC
Confidence 9999876533221 110000000000 00111112223334444445555555555 567778
Q ss_pred Chhhhhhhcccccccc
Q psy1907 316 LPTTYIKRKSSEYKVG 331 (1320)
Q Consensus 316 ~~~~~~~~~~~L~~lG 331 (1320)
+++.+..++..|....
T Consensus 197 ~~e~laaal~~l~~~~ 212 (300)
T 3i32_A 197 RVEVVAALLALLLGGA 212 (300)
T ss_dssp CHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHhcCC
Confidence 8888888888885443
No 47
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.82 E-value=2.9e-20 Score=223.20 Aligned_cols=111 Identities=17% Similarity=0.107 Sum_probs=97.5
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecC--------CCCHHHHHHHcCCCCCCCeEEEEeCccc
Q psy1907 111 QPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYS--------NLPTDMQTKIFLPTPPNARKVVLATNIA 182 (1320)
Q Consensus 111 ~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~--------~l~~~~r~~i~~~~~~g~~kVlvATdIA 182 (1320)
.+++++|||+++...++.+++.|.+. ++.+..+|| +|++.+|..+++.|++|..+|||||+++
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~ 429 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVKD---------GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVG 429 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHT---------TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGG
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHHc---------CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCcc
Confidence 56789999999999999999999873 678999999 9999999999999999999999999999
Q ss_pred ccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHHH
Q psy1907 183 ETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEVL 252 (1320)
Q Consensus 183 e~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~ 252 (1320)
+.|||+|++++||+++. |-+...+.||+|||||.|+| .||.+++++..
T Consensus 430 ~~Gldl~~~~~Vi~~d~------------------~~~~~~~~Qr~GR~~R~g~g----~~~~l~~~~t~ 477 (494)
T 1wp9_A 430 EEGLDVPEVDLVVFYEP------------------VPSAIRSIQRRGRTGRHMPG----RVIILMAKGTR 477 (494)
T ss_dssp GGGGGSTTCCEEEESSC------------------CHHHHHHHHHHTTSCSCCCS----EEEEEEETTSH
T ss_pred ccCCCchhCCEEEEeCC------------------CCCHHHHHHHHhhccCCCCc----eEEEEEecCCH
Confidence 99999999999999876 45678999999999999996 78888886544
No 48
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.82 E-value=5.1e-20 Score=227.10 Aligned_cols=118 Identities=12% Similarity=0.113 Sum_probs=56.4
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHHhhc----CCCCCeEEEEecCCCCHHHHHHHcCCCCC-CCeEEEEeCcccccC
Q psy1907 111 QPLGDILVFLTGQEEIETCNEILQDRVRRLG----SKIKELIILPVYSNLPTDMQTKIFLPTPP-NARKVVLATNIAETS 185 (1320)
Q Consensus 111 ~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~----~~~~~~~v~~LH~~l~~~~r~~i~~~~~~-g~~kVlvATdIAe~g 185 (1320)
.+++++|||++++..++.++..|.+.. .+. ....+.....+||+|++++|.++++.|++ |..+|||||+++++|
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~G 466 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENP-ILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEG 466 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCS-GGGSCCEEC------------------------------CCEEEEEC-----
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCC-CcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcC
Confidence 557899999999999999999997530 000 01124455667899999999999999999 999999999999999
Q ss_pred CCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHHH
Q psy1907 186 LTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEVL 252 (1320)
Q Consensus 186 ldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~ 252 (1320)
||+|++++||++++ |-|..+|.||+|| ||.++| .||.|+++...
T Consensus 467 iDip~v~~VI~~d~------------------p~s~~~~~Qr~GR-gR~~~g----~~~~l~~~~~~ 510 (556)
T 4a2p_A 467 IDIVQCNLVVLYEY------------------SGNVTKMIQVRGR-GRAAGS----KCILVTSKTEV 510 (556)
T ss_dssp ------CEEEEETC------------------CSCHHHHHHC---------C----CEEEEESCHHH
T ss_pred CCchhCCEEEEeCC------------------CCCHHHHHHhcCC-CCCCCc----eEEEEEeCcch
Confidence 99999999999877 5678999999999 999777 78899887654
No 49
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.81 E-value=2.7e-20 Score=229.09 Aligned_cols=123 Identities=10% Similarity=0.073 Sum_probs=77.2
Q ss_pred HHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHh---hcCCCCCeEEEEecCCCCHHHHHHHcCCCCC-CCeEEEEeCccc
Q psy1907 107 IHATQPLGDILVFLTGQEEIETCNEILQDRVRR---LGSKIKELIILPVYSNLPTDMQTKIFLPTPP-NARKVVLATNIA 182 (1320)
Q Consensus 107 i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~---l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~-g~~kVlvATdIA 182 (1320)
.....+.+++|||++++..++.++..|.+.... ......+.....+||+|++++|.++++.|++ |..+|||||+++
T Consensus 383 ~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~ 462 (555)
T 3tbk_A 383 EYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVA 462 (555)
T ss_dssp HHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCT
T ss_pred HhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchh
Confidence 333455789999999999999999999864100 0001123455667789999999999999999 999999999999
Q ss_pred ccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHHH
Q psy1907 183 ETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEVL 252 (1320)
Q Consensus 183 e~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~ 252 (1320)
++|||+|++++||++++ |-|..+|.||+|| ||..+| .||.|+++.+.
T Consensus 463 ~~GlDlp~v~~VI~~d~------------------p~s~~~~~Qr~GR-gR~~~g----~~~~l~~~~~~ 509 (555)
T 3tbk_A 463 DEGIDIAECNLVILYEY------------------VGNVIKMIQTRGR-GRARDS----KCFLLTSSADV 509 (555)
T ss_dssp TCCEETTSCSEEEEESC------------------CSSCCCEECSSCC-CTTTSC----EEEEEESCHHH
T ss_pred hcCCccccCCEEEEeCC------------------CCCHHHHHHhcCc-CcCCCc----eEEEEEcCCCH
Confidence 99999999999999887 4466788999999 999665 89999987654
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.79 E-value=1.1e-19 Score=220.51 Aligned_cols=163 Identities=26% Similarity=0.387 Sum_probs=130.5
Q ss_pred HHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCc-cC
Q psy1907 679 IDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFED-CT 757 (1320)
Q Consensus 679 l~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~-~~ 757 (1320)
.+++.+++++||+|+||||||++....+++.... .+++++|++|+|..|..+++++. |..|+|.++... ..
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~~~ 86 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-QRLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQREH 86 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-TTCCEEEEECSHHHHHHHHHHTT-------TSCEEECC-------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEECchHHHHHHHHHHhc-------CceEeEEecccccCC
Confidence 4567889999999999999999955444432221 33469999999998888887774 556666665433 23
Q ss_pred CCCccEEEEccHHHHHHHhcCCCCCCccEEEEcccccc------------------------------------------
Q psy1907 758 SERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPK------------------------------------------ 795 (1320)
Q Consensus 758 s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER------------------------------------------ 795 (1320)
++.+.+.++|.|.|++++++++.+.++++|||||||++
T Consensus 87 t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~~~~~~~~~p 166 (459)
T 2z83_A 87 QGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGTTDPFPDSNAP 166 (459)
T ss_dssp -CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCCSSC
T ss_pred CCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhccCCccEEEEEcCCCcchhhhccCCCC
Confidence 56788999999999999999999999999999999984
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 167 i~~~~~~~~~~~~~~~~~~l~~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~v~ 246 (459)
T 2z83_A 167 IHDLQDEIPDRAWSSGYEWITEYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKNGDWDFVITTDIS 246 (459)
T ss_dssp EEEEECCCCSSCCSSCCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTTCCCCCGGGSSSCCCSEEEESSCC
T ss_pred eEEecccCCcchhHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHHHHHHHHhhccCCCceEEEECChH
Confidence
Q ss_pred --------eEEEcCCccceeeccCCCCcceeEE---EEecHhhHHHHhcccCCcc--CCeEEEecchH
Q psy1907 796 --------VYVIDPGFCKQNNFNSRTGMESLTV---VPISKASANQRAGRAGRVA--AGKCFRLYTAW 850 (1320)
Q Consensus 796 --------~~ViD~G~~k~~~y~~~~~~~~L~~---~~iSkasa~QR~GRAGR~~--pG~cyrLyt~~ 850 (1320)
.+|||+|+++.+.|+ ..+.+.+.. .|+|+++..||+|||||.+ +|.||.+++..
T Consensus 247 ~~GiDip~~~VI~~G~~~~~~~~-~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 247 EMGANFGASRVIDCRKSVKPTIL-EEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ---CCCSCSEEEECCEECCEEEE-CSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HhCeecCCCEEEECCcccccccc-cccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 589999999999887 456777777 9999999999999999997 89999999874
No 51
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.78 E-value=1e-19 Score=231.58 Aligned_cols=102 Identities=13% Similarity=0.159 Sum_probs=84.3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCC--------CCHHHHHHHcCCCCCCCeEEEEeCccccc
Q psy1907 113 LGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSN--------LPTDMQTKIFLPTPPNARKVVLATNIAET 184 (1320)
Q Consensus 113 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~--------l~~~~r~~i~~~~~~g~~kVlvATdIAe~ 184 (1320)
++++|||++++..++.+++.|.+. +.+ ...++.+..+||+ |++.+|.++++.|+.|..+|||||+++++
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~-~~l--~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~ 476 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITEN-EKF--AEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEE 476 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSS-CSC--C-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCT
T ss_pred CCcEEEEECcHHHHHHHHHHHHhC-ccc--cccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Confidence 688999999999999999999753 000 1126889999999 99999999999999999999999999999
Q ss_pred CCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCC
Q psy1907 185 SLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFN 235 (1320)
Q Consensus 185 gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g 235 (1320)
|||+|++++||++++ |-|..+|.||+|||||.|
T Consensus 477 GIDip~v~~VI~~d~------------------p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 477 GLDIKECNIVIRYGL------------------VTNEIAMVQARGRARADE 509 (699)
T ss_dssp TSCCCSCCCCEEESC------------------CCCHHHHHHHHTTSCSSS
T ss_pred CCccccCCEEEEeCC------------------CCCHHHHHHHcCCCCCCC
Confidence 999999999999887 567899999999988775
No 52
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.78 E-value=7.7e-19 Score=227.11 Aligned_cols=118 Identities=12% Similarity=0.106 Sum_probs=61.9
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcC----CCCCeEEEEecCCCCHHHHHHHcCCCCC-CCeEEEEeCcccccC
Q psy1907 111 QPLGDILVFLTGQEEIETCNEILQDRVRRLGS----KIKELIILPVYSNLPTDMQTKIFLPTPP-NARKVVLATNIAETS 185 (1320)
Q Consensus 111 ~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~----~~~~~~v~~LH~~l~~~~r~~i~~~~~~-g~~kVlvATdIAe~g 185 (1320)
.+++++|||++++..++.++..|.+.. .+.. ...+.....+||+|++.+|..+++.|+. |..+|||||+++++|
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~-~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~G 707 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENP-ILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEG 707 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCS-TTCSCCCEEC----------------------------CCSEEEEECC----
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCc-ccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcC
Confidence 556899999999999999999997520 0000 0123456677999999999999999999 999999999999999
Q ss_pred CCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHHH
Q psy1907 186 LTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEVL 252 (1320)
Q Consensus 186 ldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~ 252 (1320)
||+|++++||+++. |-|..+|.||+|| ||..+| .||.|+++...
T Consensus 708 IDlp~v~~VI~yd~------------------p~s~~~~iQr~GR-GR~~~g----~~i~l~~~~~~ 751 (797)
T 4a2q_A 708 IDIVQCNLVVLYEY------------------SGNVTKMIQVRGR-GRAAGS----KCILVTSKTEV 751 (797)
T ss_dssp ---CCCSEEEEESC------------------CSCHHHHHTC--------CC----CEEEEECCHHH
T ss_pred CCchhCCEEEEeCC------------------CCCHHHHHHhcCC-CCCCCc----eEEEEEeCCcH
Confidence 99999999999876 5678999999999 999777 78899887654
No 53
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.78 E-value=7e-20 Score=242.38 Aligned_cols=230 Identities=13% Similarity=0.075 Sum_probs=153.9
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCC---------ccCcC-cchHHHHHHHHh-hcC-----------CCCcEEEEec
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAH---------ERTLH-TDILFGLVKDIV-RFR-----------SDLKLLISSA 58 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaH---------eR~l~-td~ll~llk~l~-~~r-----------~~~qlIl~SA 58 (1320)
+|||+|++.+.. ..++++++||||||| +|+++ .++....++.+. ..+ ++.|+++|||
T Consensus 180 ~Tp~rL~~~l~~-l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SA 258 (1104)
T 4ddu_A 180 FSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSA 258 (1104)
T ss_dssp EEHHHHHHSHHH-HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECB
T ss_pred ECHHHHHHHHHh-hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcC
Confidence 499999887653 337899999999999 56666 666555333333 233 7789999999
Q ss_pred CcCHH-----HHHhhcCCCCEEEeCCcccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHH
Q psy1907 59 TLDAQ-----KFSEFFDDAPVFRIPGRRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEIL 133 (1320)
Q Consensus 59 Tl~~~-----~f~~~f~~~~vi~i~g~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L 133 (1320)
|+.+. .+..++. ..+.........+...|.... ....+...+.. .++++|||++++..++.++..|
T Consensus 259 T~~p~~~~~~~~~~~l~-i~v~~~~~~~~~i~~~~~~~~---k~~~L~~ll~~-----~~~~~LVF~~s~~~a~~l~~~L 329 (1104)
T 4ddu_A 259 TAKPRGIRPLLFRDLLN-FTVGRLVSVARNITHVRISSR---SKEKLVELLEI-----FRDGILIFAQTEEEGKELYEYL 329 (1104)
T ss_dssp SSCCCSSTTHHHHHHTC-CCCCBCCCCCCCEEEEEESCC---CHHHHHHHHHH-----HCSSEEEEESSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHhhccee-EEeccCCCCcCCceeEEEecC---HHHHHHHHHHh-----cCCCEEEEECcHHHHHHHHHHH
Confidence 95332 2333332 112111122234555565543 22332222222 1478999999999999999999
Q ss_pred HHHHHhhcCCCCCeEEE-EecCCCCHHHHHHHcCCCCCCCeEEEEe----CcccccCCCCCC-ccEEEcCCCCcc-----
Q psy1907 134 QDRVRRLGSKIKELIIL-PVYSNLPTDMQTKIFLPTPPNARKVVLA----TNIAETSLTIDN-IIYVIDPGFCKQ----- 202 (1320)
Q Consensus 134 ~~~~~~l~~~~~~~~v~-~LH~~l~~~~r~~i~~~~~~g~~kVlvA----TdIAe~gldIp~-I~~VID~g~~k~----- 202 (1320)
... ++.+. .+||. |.+ ++.|++|..+|||| ||++++|||||+ |++|||+|+|+.
T Consensus 330 ~~~---------g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle 394 (1104)
T 4ddu_A 330 KRF---------KFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLE 394 (1104)
T ss_dssp HHT---------TCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECS
T ss_pred HhC---------CCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcc
Confidence 873 67787 99992 555 88999999999999 999999999999 999999999871
Q ss_pred ccccCCCCcccc-------------------------------------------------ceeccCHhhHHHHhhhcCC
Q psy1907 203 NNFNSRTGMESL-------------------------------------------------TVVPISKASANQRAGVITG 233 (1320)
Q Consensus 203 ~~yd~~~g~~~l-------------------------------------------------~~~piSk~s~~QR~GRAGR 233 (1320)
..+++..++..+ .....+..+|+||+|||||
T Consensus 395 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR 474 (1104)
T 4ddu_A 395 LDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSR 474 (1104)
T ss_dssp SSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCC
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhc
Confidence 112222111111 1112367799999999999
Q ss_pred CCCC-CCceEEEEecCHH-HHhhc
Q psy1907 234 FNPL-SDFRGCAHVLGEE-VLRGC 255 (1320)
Q Consensus 234 ~g~g-~~fg~~~~L~~~~-~~~~l 255 (1320)
.|+| ..-|.++.+.+++ .++.+
T Consensus 475 ~~~gg~~~Glsi~~~~d~~~~~~l 498 (1104)
T 4ddu_A 475 ILNGVLVKGVSVIFEEDEEIFESL 498 (1104)
T ss_dssp EETTEECCEEEEEECCCHHHHHHH
T ss_pred ccCCCcccceEEEEEecHHHHHHH
Confidence 8764 2347888887644 34444
No 54
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.77 E-value=1.5e-19 Score=217.71 Aligned_cols=281 Identities=20% Similarity=0.291 Sum_probs=178.3
Q ss_pred hCCEEEEEcCCCCchhcHH-HHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeec-CccCCCCc
Q psy1907 684 DHQVLIIEGETGSGKTTQI-PQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRF-EDCTSERT 761 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqv-Pq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irf-e~~~s~~T 761 (1320)
+++.++|+|+||||||+.. +.+|... . ..+.+++++.|+|..|..+++.+. |..|+|..+. +...+++.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~-~-~~g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~~~~~~~ 71 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREA-V-KKRLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQSERTGNE 71 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHH-H-HTTCCEEEEESSHHHHHHHHHHTT-------TSCEEEC---------CCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH-H-hCCCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccccCCCCc
Confidence 4789999999999999985 5555332 1 233469999999998777665542 5678887775 55667789
Q ss_pred cEEEEccHHHHHHHhcCCCCCCccEEEEcccccc----------------------------------------------
Q psy1907 762 IIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPK---------------------------------------------- 795 (1320)
Q Consensus 762 ~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER---------------------------------------------- 795 (1320)
.+.++|+|.+.+.++.++.+.++++|||||+|..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~i~~~ 151 (431)
T 2v6i_A 72 IVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPSNSPIIDE 151 (431)
T ss_dssp SEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCCSSCCEEE
T ss_pred eEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCCCCceeec
Confidence 9999999999999999999999999999999976
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~v~e~Gi 231 (431)
T 2v6i_A 152 ETRIPDKAWNSGYEWITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWDFVITTDISEMGA 231 (431)
T ss_dssp ECCCCSSCCSSCCHHHHSCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTTHHHHTTHHHHSCCSEEEECGGGGTSC
T ss_pred cccCCHHHHHHHHHHHHcCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCccHHHHHHhhcCCCCeEEEECchHHcCc
Confidence
Q ss_pred ----eEEEcCCccceeeccCCCCcceeEEEEecHhhHHHHhcccCCccC-CeEEEecchHHhhhhccCCCchhhhccChH
Q psy1907 796 ----VYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGRAGRVAA-GKCFRLYTAWAYKHELEDNTVPEIQRINLG 870 (1320)
Q Consensus 796 ----~~ViD~G~~k~~~y~~~~~~~~L~~~~iSkasa~QR~GRAGR~~p-G~cyrLyt~~~~~~~l~~~~~PEI~R~~L~ 870 (1320)
.+|||+|..+.+.|| ..+|......|.|.++..||+|||||.++ +.|+-+|.... .+...+.+...
T Consensus 232 Dip~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~~~~-----~~~~~~~~~~~--- 302 (431)
T 2v6i_A 232 NFKADRVIDPRKTIKPILL-DGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYSGNV-----SSDNEGHVSWT--- 302 (431)
T ss_dssp CCCCSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEECSCC-----CCCCTTBHHHH---
T ss_pred ccCCcEEEecCccccceec-ccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEcCCC-----CCccchhHHHH---
Confidence 479999999999999 67777788889999999999999999974 44666665321 11111111111
Q ss_pred HHHHHHHHcCCCCcccc-------cCC-CCCCh-----HHHHHHHHHHHHccccCCCCCccccccccccccCChhhHHHH
Q psy1907 871 NAVLMLKALGINDLIHF-------DFL-DPPPH-----ETLVLALEQLYALGALNHHGDLTKLGRRMAEFPLDPMMGKML 937 (1320)
Q Consensus 871 ~~vL~lk~lgi~d~~~f-------~fl-dpP~~-----~~l~~Ale~L~~LgAld~~g~LT~lG~~ma~lPldP~laK~L 937 (1320)
.....|+.+...+-... +.. .+|+. .+-..+.+.|.. +++|. .++
T Consensus 303 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-----------------~~~~~--~l~--- 360 (431)
T 2v6i_A 303 EARMLLDNVHVQGGVVAQLYTPEREKTEAYEGEFKLKTNQRKVFSELIRT-----------------GDLPV--WLA--- 360 (431)
T ss_dssp HHHHHHTTCCCTTSCCCCCCGGGGGGCCCCTTTTCCCHHHHHHHHHHHHT-----------------TCCCH--HHH---
T ss_pred HHHHHHhhcCCCCCcceeccchhhhccCCCCCceehhHhHHHHHHHHhhc-----------------CCCch--hhh---
Confidence 11223333432221111 111 12211 111112222211 11221 111
Q ss_pred HhhhhccchHHHHHHHhhccc--CCccccCChhHHHHHHHHHhhhcccCCCHHHHHHHHHHHhhcc-cchhhHHhhccch
Q psy1907 938 LASEKYKCVEEIVTIASMLSV--NGAIFYRPKDKIIHADTARKNFFMLGGDHLVLLNIYNQWADAD-FSTQWCYENFIQH 1014 (1320)
Q Consensus 938 l~s~~~~c~~e~ltIaA~Lsv--~~~~f~~p~~~~~~a~~~r~~f~~~~gDhltllnvy~~w~~~~-~~~~wC~~n~l~~ 1014 (1320)
.....+.+.. .+..|..|......+++....+..++|||.++. .+|.+++ ++.+||.+||+++
T Consensus 361 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 426 (431)
T 2v6i_A 361 -----------FQVASANVEYHDRKWCFDGPNEHLLLENNQEIEVWTRQGQRRVLK---PRWLDGRITSDHLNLKSFKEF 426 (431)
T ss_dssp -----------HHHHHTTCCTTCCGGGTCSCGGGCCCBTTBCCEEECSSCCEEECC---CSSCBGGGGSSHHHHHHHHHH
T ss_pred -----------HHHHhccCceeecceeeeCCccceecccCCceEEecCCCCeeeec---ceEecccccchhHHHHHHHHH
Confidence 1111122222 233566777655555556667778899998887 7899988 8999999999998
Q ss_pred hhHH
Q psy1907 1015 RSMK 1018 (1320)
Q Consensus 1015 ~~l~ 1018 (1320)
++++
T Consensus 427 ~~~~ 430 (431)
T 2v6i_A 427 ASGK 430 (431)
T ss_dssp HTTC
T ss_pred hhcC
Confidence 8764
No 55
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.75 E-value=4e-18 Score=223.48 Aligned_cols=119 Identities=11% Similarity=0.099 Sum_probs=62.4
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHH--hhc-CCCCCeEEEEecCCCCHHHHHHHcCCCCC-CCeEEEEeCcccccCC
Q psy1907 111 QPLGDILVFLTGQEEIETCNEILQDRVR--RLG-SKIKELIILPVYSNLPTDMQTKIFLPTPP-NARKVVLATNIAETSL 186 (1320)
Q Consensus 111 ~~~g~iLVFl~t~~eie~l~~~L~~~~~--~l~-~~~~~~~v~~LH~~l~~~~r~~i~~~~~~-g~~kVlvATdIAe~gl 186 (1320)
.+.+++|||++++..++.++..|.+... .+. ....+.....+||+|++.+|..+++.|+. |..+|||||+++++||
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGI 708 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCC
Confidence 4468899999999999999999986310 000 00114456677999999999999999998 9999999999999999
Q ss_pred CCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHHH
Q psy1907 187 TIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEVL 252 (1320)
Q Consensus 187 dIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~ 252 (1320)
|+|++++||+++. |-|..+|.||+|| ||..+| .||.|++....
T Consensus 709 Dlp~v~~VI~yD~------------------p~s~~~~iQr~GR-GR~~~g----~vi~Li~~~t~ 751 (936)
T 4a2w_A 709 DIVQCNLVVLYEY------------------SGNVTKMIQVRGR-GRAAGS----KCILVTSKTEV 751 (936)
T ss_dssp -CCCCSEEEEESC------------------CSCSHHHHCC--------CC----CEEEEESCHHH
T ss_pred cchhCCEEEEeCC------------------CCCHHHHHHhcCC-CCCCCC----EEEEEEeCCCH
Confidence 9999999999876 5577899999999 999887 68888886544
No 56
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.74 E-value=2.7e-18 Score=215.11 Aligned_cols=173 Identities=27% Similarity=0.424 Sum_probs=145.6
Q ss_pred HhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHH-HHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCC
Q psy1907 665 TKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQI-PQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKL 743 (1320)
Q Consensus 665 ~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqv-Pq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~l 743 (1320)
+|+.|||+++ . +..+.+++.+|++|+||||||++. +++|.+.. . .+.+++|+.|+|..|..+++.+.
T Consensus 169 ~~~~lpiq~~--~-i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~-~-~~~~vLvl~PtreLa~Qi~~~l~------- 236 (618)
T 2whx_A 169 ERIGEPDYEV--D-EDIFRKKRLTIMDLHPGAGKTKRILPSIVREAL-K-RRLRTLILAPTRVVAAEMEEALR------- 236 (618)
T ss_dssp CCCCCCCCCC--C-GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHH-H-TTCCEEEEESSHHHHHHHHHHTT-------
T ss_pred cccCCCcccc--C-HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHH-h-CCCeEEEEcChHHHHHHHHHHhc-------
Confidence 4889999988 3 889999999999999999999984 55554321 1 33468999999997777665543
Q ss_pred CCeeeEEeec-CccCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEcccccc---------------------------
Q psy1907 744 GCEVGYAIRF-EDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPK--------------------------- 795 (1320)
Q Consensus 744 G~~VGY~irf-e~~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER--------------------------- 795 (1320)
|..|||+++. +...++.+.|.++|+|+|+++++.++.|.++++|||||||++
T Consensus 237 ~~~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~~~~~q~il~SA 316 (618)
T 2whx_A 237 GLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTA 316 (618)
T ss_dssp TSCEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECS
T ss_pred CCceeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhcccCccEEEEEC
Confidence 6678998886 567788999999999999999999999999999999999985
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 317 T~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~l~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~R~~~l~~ 396 (618)
T 2whx_A 317 TPPGSTDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPK 396 (618)
T ss_dssp SCTTCCCSSCCCSSCEEEEECCCCSSCCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTTHHHHTTH
T ss_pred CCchhhhhhhccCCceeeecccCCHHHHHHHHHHHHhCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChHHHHHHHHh
Confidence
Q ss_pred -----------------------eEEEcCCccceeec--cCCCCcceeEEEEecHhhHHHHhcccCCcc--CCeEEEecc
Q psy1907 796 -----------------------VYVIDPGFCKQNNF--NSRTGMESLTVVPISKASANQRAGRAGRVA--AGKCFRLYT 848 (1320)
Q Consensus 796 -----------------------~~ViD~G~~k~~~y--~~~~~~~~L~~~~iSkasa~QR~GRAGR~~--pG~cyrLyt 848 (1320)
.+|||+|+.+.+.+ +...++......|+|.+++.||+|||||.+ +|.||.+++
T Consensus 397 F~~g~~~VLVaTdv~~rGiDi~v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 397 TKLTDWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp HHHSCCSEEEECGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred hcCCCcEEEEECcHHHcCcccCceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 58999999888776 555567778888999999999999999996 899999998
Q ss_pred h
Q psy1907 849 A 849 (1320)
Q Consensus 849 ~ 849 (1320)
+
T Consensus 477 ~ 477 (618)
T 2whx_A 477 D 477 (618)
T ss_dssp C
T ss_pred C
Confidence 4
No 57
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.74 E-value=1.1e-17 Score=174.40 Aligned_cols=140 Identities=14% Similarity=0.143 Sum_probs=118.8
Q ss_pred cceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHH
Q psy1907 82 FPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQ 161 (1320)
Q Consensus 82 ~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r 161 (1320)
..++.+|...+..++++.+...+. ..+++++|||+++...++.++..|.+. ++.+..+||+|++.+|
T Consensus 8 ~~i~~~~~~~~~~~K~~~L~~ll~----~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r 74 (163)
T 2hjv_A 8 RNIEHAVIQVREENKFSLLKDVLM----TENPDSCIIFCRTKEHVNQLTDELDDL---------GYPCDKIHGGMIQEDR 74 (163)
T ss_dssp CCEEEEEEECCGGGHHHHHHHHHH----HHCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHH
T ss_pred ccceEEEEECChHHHHHHHHHHHH----hcCCCcEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHH
Confidence 447777877777777665544433 334678999999999999999999863 6789999999999999
Q ss_pred HHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCce
Q psy1907 162 TKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFR 241 (1320)
Q Consensus 162 ~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg 241 (1320)
..+++.|+.|..+|||||+++++|+|+|++++||++++ |.+..+|.||+||+||.|.. |
T Consensus 75 ~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g~~---g 133 (163)
T 2hjv_A 75 FDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDL------------------PLEKESYVHRTGRTGRAGNK---G 133 (163)
T ss_dssp HHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSC------------------CSSHHHHHHHTTTSSCTTCC---E
T ss_pred HHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCC------------------CCCHHHHHHhccccCcCCCC---c
Confidence 99999999999999999999999999999999999886 66789999999999999865 6
Q ss_pred EEEEecCHHHHhhc
Q psy1907 242 GCAHVLGEEVLRGC 255 (1320)
Q Consensus 242 ~~~~L~~~~~~~~l 255 (1320)
.|+.++++.+...+
T Consensus 134 ~~~~~~~~~~~~~~ 147 (163)
T 2hjv_A 134 KAISFVTAFEKRFL 147 (163)
T ss_dssp EEEEEECGGGHHHH
T ss_pred eEEEEecHHHHHHH
Confidence 89999987655433
No 58
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.74 E-value=5.7e-18 Score=212.99 Aligned_cols=123 Identities=19% Similarity=0.053 Sum_probs=101.2
Q ss_pred cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCe
Q psy1907 94 ADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNAR 173 (1320)
Q Consensus 94 ~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~ 173 (1320)
.++..+++..+...+.. +..+|||++|.+.++.++..|.+ .++.+..|||++.+.++..+.+.++.|
T Consensus 415 ~~K~~al~~~i~~~~~~--~~pvLVft~s~~~se~Ls~~L~~---------~gi~~~vLhg~~~~rEr~ii~~ag~~g-- 481 (844)
T 1tf5_A 415 EGKFKAVAEDVAQRYMT--GQPVLVGTVAVETSELISKLLKN---------KGIPHQVLNAKNHEREAQIIEEAGQKG-- 481 (844)
T ss_dssp HHHHHHHHHHHHHHHHH--TCCEEEEESCHHHHHHHHHHHHT---------TTCCCEEECSSCHHHHHHHHTTTTSTT--
T ss_pred HHHHHHHHHHHHHHHhc--CCcEEEEECCHHHHHHHHHHHHH---------CCCCEEEeeCCccHHHHHHHHHcCCCC--
Confidence 34455555555544433 35699999999999999999986 378889999999999988777777766
Q ss_pred EEEEeCcccccCCCCC--------CccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEE
Q psy1907 174 KVVLATNIAETSLTID--------NIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAH 245 (1320)
Q Consensus 174 kVlvATdIAe~gldIp--------~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~ 245 (1320)
.|+||||+|+||+||+ |+.+||++++ |-|...|.||+|||||.|.. |.++.
T Consensus 482 ~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~------------------p~s~r~y~hr~GRTGRqG~~---G~s~~ 540 (844)
T 1tf5_A 482 AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTER------------------HESRRIDNQLRGRSGRQGDP---GITQF 540 (844)
T ss_dssp CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSC------------------CSSHHHHHHHHTTSSGGGCC---EEEEE
T ss_pred eEEEeCCccccCcCccccchhhhcCCcEEEEecC------------------CCCHHHHHhhcCccccCCCC---CeEEE
Confidence 5999999999999999 8999999988 66788999999999999876 68887
Q ss_pred ecCHH
Q psy1907 246 VLGEE 250 (1320)
Q Consensus 246 L~~~~ 250 (1320)
+.+.+
T Consensus 541 ~vs~e 545 (844)
T 1tf5_A 541 YLSME 545 (844)
T ss_dssp EEETT
T ss_pred EecHH
Confidence 77754
No 59
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.74 E-value=6.8e-18 Score=224.72 Aligned_cols=206 Identities=18% Similarity=0.153 Sum_probs=148.3
Q ss_pred CHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhcCCCC-EEEe---
Q psy1907 2 TDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFFDDAP-VFRI--- 77 (1320)
Q Consensus 2 T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~~~~-vi~i--- 77 (1320)
|+++| ..+-.++++++|||||+|..+. ...+.+...+++.++++||||+.+..+...+.+.. ...+
T Consensus 713 T~~ll----~~~~~~~~l~lvIiDEaH~~g~------~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~ 782 (1151)
T 2eyq_A 713 THKLL----QSDVKFKDLGLLIVDEEHRFGV------RHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP 782 (1151)
T ss_dssp CTHHH----HSCCCCSSEEEEEEESGGGSCH------HHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC
T ss_pred CHHHH----hCCccccccceEEEechHhcCh------HHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC
Confidence 56544 2344589999999999996321 22333344566789999999997666555443322 2222
Q ss_pred CCcccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCC
Q psy1907 78 PGRRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLP 157 (1320)
Q Consensus 78 ~g~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~ 157 (1320)
+....++..++........ ...+.... ..+++++||+++.++++.+++.|.+.. ++..+..+||+|+
T Consensus 783 ~~~r~~i~~~~~~~~~~~i----~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~-------p~~~v~~lhg~~~ 849 (1151)
T 2eyq_A 783 PARRLAVKTFVREYDSMVV----REAILREI--LRGGQVYYLYNDVENIQKAAERLAELV-------PEARIAIGHGQMR 849 (1151)
T ss_dssp CCBCBCEEEEEEECCHHHH----HHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHC-------TTSCEEECCSSCC
T ss_pred CCCccccEEEEecCCHHHH----HHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhC-------CCCeEEEEeCCCC
Confidence 2234566665554332222 22222222 236889999999999999999998753 4678999999999
Q ss_pred HHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCC
Q psy1907 158 TDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPL 237 (1320)
Q Consensus 158 ~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g 237 (1320)
+.+|.++++.|.+|..+|||||+++++|||||++++||..+.. +.+.+++.||+||+||.|..
T Consensus 850 ~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~-----------------~~~l~~l~Qr~GRvgR~g~~ 912 (1151)
T 2eyq_A 850 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD-----------------HFGLAQLHQLRGRVGRSHHQ 912 (1151)
T ss_dssp HHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTT-----------------SSCHHHHHHHHTTCCBTTBC
T ss_pred HHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCC-----------------CCCHHHHHHHHhccCcCCCc
Confidence 9999999999999999999999999999999999999964331 22457899999999999865
Q ss_pred CCceEEEEecCHH
Q psy1907 238 SDFRGCAHVLGEE 250 (1320)
Q Consensus 238 ~~fg~~~~L~~~~ 250 (1320)
|.||.+++.+
T Consensus 913 ---g~~~ll~~~~ 922 (1151)
T 2eyq_A 913 ---AYAWLLTPHP 922 (1151)
T ss_dssp ---EEEEEEECCG
T ss_pred ---eEEEEEECCc
Confidence 6899888753
No 60
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.73 E-value=7.6e-18 Score=204.02 Aligned_cols=161 Identities=27% Similarity=0.435 Sum_probs=133.3
Q ss_pred HHHHHHhCCEEEEEcCCCCchhcH-HHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCc-
Q psy1907 678 LIDAVRDHQVLIIEGETGSGKTTQ-IPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFED- 755 (1320)
Q Consensus 678 il~~i~~~~v~ii~geTGsGKTTq-vPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~- 755 (1320)
|-.++..+++++++|+||||||++ ++.+|.+.. . .+.+++|+.|+|..|..+++++ + |..|||.++...
T Consensus 12 i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~-~-~~~~~lvl~Ptr~La~Q~~~~l----~---g~~v~~~~~~~~~ 82 (451)
T 2jlq_A 12 DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREAL-L-RRLRTLILAPTRVVAAEMEEAL----R---GLPIRYQTPAVKS 82 (451)
T ss_dssp CGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHH-H-TTCCEEEEESSHHHHHHHHHHT----T---TSCEEECCTTCSC
T ss_pred HHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHH-h-cCCcEEEECCCHHHHHHHHHHh----c---Cceeeeeeccccc
Confidence 444567889999999999999996 555544322 1 2346999999999776666554 2 667888877664
Q ss_pred cCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEcccccc----------------------------------------
Q psy1907 756 CTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPK---------------------------------------- 795 (1320)
Q Consensus 756 ~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER---------------------------------------- 795 (1320)
..++.+.|.++|.|+|++.+++++.|.++++|||||||++
T Consensus 83 ~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 162 (451)
T 2jlq_A 83 DHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQSN 162 (451)
T ss_dssp CCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCCS
T ss_pred cCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHhhcCCCceEEEEccCCCccchhhhcCC
Confidence 4456789999999999999999999999999999999974
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 163 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~ 242 (451)
T 2jlq_A 163 SPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD 242 (451)
T ss_dssp SCEEEEECCCCSSCCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHHHHGGGGGSSCCSEEEECG
T ss_pred CceEecCccCCchhhHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHHHHHHHhhccCCceEEEECC
Confidence
Q ss_pred ----------eEEEcCCccceeeccCCCCcceeEE---EEecHhhHHHHhcccCCcc--CCeEEEecc
Q psy1907 796 ----------VYVIDPGFCKQNNFNSRTGMESLTV---VPISKASANQRAGRAGRVA--AGKCFRLYT 848 (1320)
Q Consensus 796 ----------~~ViD~G~~k~~~y~~~~~~~~L~~---~~iSkasa~QR~GRAGR~~--pG~cyrLyt 848 (1320)
.+|||.|+++.+.|| ..+++.+.. .|+|.++..||+|||||.+ +|.||.++.
T Consensus 243 v~~~GiDip~~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 243 ISEMGANFRAGRVIDPRRCLKPVIL-TDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp GGGSSCCCCCSEEEECCEEEEEEEE-CSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred HHHhCcCCCCCEEEECCCccccccc-ccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 589999999999998 678888887 9999999999999999998 899988865
No 61
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.73 E-value=3.3e-18 Score=215.29 Aligned_cols=201 Identities=20% Similarity=0.202 Sum_probs=145.4
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccCCCCccE
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSERTII 763 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~s~~T~i 763 (1320)
++++++++|+||||||+.+.+.+.+.+ . .++++|+|..|..+++++.+ +|.++|..+|..............+
T Consensus 154 ~rk~vlv~apTGSGKT~~al~~l~~~~----~--gl~l~PtR~LA~Qi~~~l~~-~g~~v~lltG~~~~iv~TpGr~~~i 226 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHAIQKYFSAK----S--GVYCGPLKLLAHEIFEKSNA-AGVPCDLVTGEERVTVQPNGKQASH 226 (677)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHSS----S--EEEEESSHHHHHHHHHHHHH-TTCCEEEECSSCEECCSTTCCCCSE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcC----C--eEEEeCHHHHHHHHHHHHHh-cCCcEEEEECCeeEEecCCCcccce
Confidence 678999999999999999999888762 1 25669999999999999865 4555444444333322222234678
Q ss_pred EEEccHHHHHHHhcCCCCCCccEEEEcccccc------------------------------------------------
Q psy1907 764 KYMTDGTLHREFLSEPDLASYSVMIIDEAHPK------------------------------------------------ 795 (1320)
Q Consensus 764 ~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER------------------------------------------------ 795 (1320)
..+|..++ +.+..|++|||||||++
T Consensus 227 l~~T~e~~-------~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~~v~~ 299 (677)
T 3rc3_A 227 VSCTVEMC-------SVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRD 299 (677)
T ss_dssp EEEEGGGC-------CSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCEEEEE
T ss_pred eEecHhHh-------hhcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCceEEEE
Confidence 88887543 35788999999999964
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 300 ~~r~~~l~~~~~~l~~l~~~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVAT 379 (677)
T 3rc3_A 300 YKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVAT 379 (677)
T ss_dssp CCCSSCEEECSSCCCSGGGCCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEEC
T ss_pred eeecchHHHHHHHHHHHHhcCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeC
Confidence
Q ss_pred -----------eEEEcCCccceeeccCCCCcceeEEEEecHhhHHHHhcccCCcc----CCeEEEecchH--HhhhhccC
Q psy1907 796 -----------VYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGRAGRVA----AGKCFRLYTAW--AYKHELED 858 (1320)
Q Consensus 796 -----------~~ViD~G~~k~~~y~~~~~~~~L~~~~iSkasa~QR~GRAGR~~----pG~cyrLyt~~--~~~~~l~~ 858 (1320)
.+|||.|+.|. .||+..+. ...|+|.+++.||+|||||.+ +|.||++|++. .+ ..+..
T Consensus 380 di~e~GlDi~v~~VI~~~~~k~-~~~~~G~~---~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~-~~~~~ 454 (677)
T 3rc3_A 380 DAIGMGLNLSIRRIIFYSLIKP-SINEKGER---ELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLL-KEILK 454 (677)
T ss_dssp GGGGSSCCCCBSEEEESCSBC---------------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHH-HHHHH
T ss_pred cHHHCCcCcCccEEEECCcccc-ccccCCcc---ccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHH-HHHHh
Confidence 57999999988 88887443 267999999999999999998 69999999886 33 34677
Q ss_pred CCchhhhccChHHHHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccccCC
Q psy1907 859 NTVPEIQRINLGNAVLMLKALGINDLIHFDFLDPPPHETLVLALEQLYALGALNH 913 (1320)
Q Consensus 859 ~~~PEI~R~~L~~~vL~lk~lgi~d~~~f~fldpP~~~~l~~Ale~L~~LgAld~ 913 (1320)
...|+|.+.+|....++++.++.. ++...+...++.+..++.++.
T Consensus 455 ~~~~~i~~~~l~p~~~~l~~~~~~----------l~~~~l~ell~~l~~~~~vd~ 499 (677)
T 3rc3_A 455 RPVDPIRAAGLHPTAEQIEMFAYH----------LPDATLSNLIDIFVDFSQVDG 499 (677)
T ss_dssp SCCCCCCCEEECCCHHHHHHHHHH----------STTSCHHHHHHHHHHHCBCCT
T ss_pred cCcchhhhccCCChHHHHHHHhcc----------CCcchHHHHHHHHHHhhcccc
Confidence 889999999998888888888732 122346667777777777664
No 62
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=176.32 Aligned_cols=144 Identities=11% Similarity=0.161 Sum_probs=114.0
Q ss_pred ceeEEEEcCCccc-hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHH
Q psy1907 83 PVDIYYTKAPEAD-YIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQ 161 (1320)
Q Consensus 83 pV~~~y~~~~~~~-~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r 161 (1320)
.+..+|...+..+ +++ .+..+....+++++|||++++..++.++..|.+ .++.+..+||+|++.+|
T Consensus 7 ~i~q~~~~~~~~~~K~~----~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~---------~~~~~~~~~g~~~~~~R 73 (175)
T 2rb4_A 7 NIRQYYVLCEHRKDKYQ----ALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQ---------DGHQVSLLSGELTVEQR 73 (175)
T ss_dssp CEEEEEEECSSHHHHHH----HHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHT---------TTCCEEEECSSCCHHHH
T ss_pred CceEEEEEcCChHhHHH----HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH---------cCCcEEEEeCCCCHHHH
Confidence 4677777766543 433 344555555678899999999999999999976 36789999999999999
Q ss_pred HHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCce
Q psy1907 162 TKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFR 241 (1320)
Q Consensus 162 ~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg 241 (1320)
..+++.|++|..+|||||+++++|+|+|++++||+++++..+ ....+..+|.||+|||||.|.. |
T Consensus 74 ~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~------------~~~~~~~~~~qr~GR~gR~g~~---g 138 (175)
T 2rb4_A 74 ASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQ------------GEEPDYETYLHRIGRTGRFGKK---G 138 (175)
T ss_dssp HHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--------------CCSCCHHHHHHHHCBC----CC---E
T ss_pred HHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCc------------cccCCHHHHHHHhcccccCCCC---c
Confidence 999999999999999999999999999999999998874221 0127889999999999999865 7
Q ss_pred EEEEecCHHHHhh
Q psy1907 242 GCAHVLGEEVLRG 254 (1320)
Q Consensus 242 ~~~~L~~~~~~~~ 254 (1320)
.|+.+++..+...
T Consensus 139 ~~~~~~~~~~~~~ 151 (175)
T 2rb4_A 139 LAFNMIEVDELPS 151 (175)
T ss_dssp EEEEEECGGGHHH
T ss_pred eEEEEEccchHHH
Confidence 9999999776443
No 63
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.72 E-value=1.2e-18 Score=222.54 Aligned_cols=207 Identities=16% Similarity=0.163 Sum_probs=139.0
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHh-hcCCCCEEEeC-
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSE-FFDDAPVFRIP- 78 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~-~f~~~~vi~i~- 78 (1320)
+||++|.+ +..++++++|||||+|..+... ...+.....+.++++||||+.+..+.. ++++..+..+.
T Consensus 477 gT~~ll~~----~~~~~~l~lVVIDEaHr~g~~q------r~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~ 546 (780)
T 1gm5_A 477 GTHALIQE----DVHFKNLGLVIIDEQHRFGVKQ------REALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDE 546 (780)
T ss_dssp ECTTHHHH----CCCCSCCCEEEEESCCCC-----------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECC
T ss_pred ECHHHHhh----hhhccCCceEEecccchhhHHH------HHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeec
Confidence 37776643 3458999999999999632221 111222345689999999997766653 55554444332
Q ss_pred --CcccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHH--------HHHHHHHHHHHHhhcCCCCCeE
Q psy1907 79 --GRRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEI--------ETCNEILQDRVRRLGSKIKELI 148 (1320)
Q Consensus 79 --g~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~ei--------e~l~~~L~~~~~~l~~~~~~~~ 148 (1320)
....|+...+.... ..+..+..+.... ..+++++||+|+.++. +.+++.|.+ ...+++.
T Consensus 547 ~p~~r~~i~~~~~~~~---~~~~l~~~i~~~l--~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~------~~~~~~~ 615 (780)
T 1gm5_A 547 MPPGRKEVQTMLVPMD---RVNEVYEFVRQEV--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSK------EVFPEFK 615 (780)
T ss_dssp CCSSCCCCEECCCCSS---THHHHHHHHHHHT--TTSCCBCCBCCCC--------CHHHHHHHSGGG------SCC---C
T ss_pred cCCCCcceEEEEeccc---hHHHHHHHHHHHH--hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHh------hhcCCCc
Confidence 23356665544332 2333333333222 2357899999987654 333333322 0234678
Q ss_pred EEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHh
Q psy1907 149 ILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRA 228 (1320)
Q Consensus 149 v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~ 228 (1320)
+..+||+|++++|..+++.|++|..+|||||+++|+|||+|++++||+++.++ .+.+++.||+
T Consensus 616 v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r-----------------~~l~~l~Qr~ 678 (780)
T 1gm5_A 616 LGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPER-----------------FGLAQLHQLR 678 (780)
T ss_dssp BCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSS-----------------SCTTHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCC-----------------CCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999876532 2457899999
Q ss_pred hhcCCCCCCCCceEEEEecC
Q psy1907 229 GVITGFNPLSDFRGCAHVLG 248 (1320)
Q Consensus 229 GRAGR~g~g~~fg~~~~L~~ 248 (1320)
|||||.|.. |.||.+++
T Consensus 679 GRaGR~g~~---g~~ill~~ 695 (780)
T 1gm5_A 679 GRVGRGGQE---AYCFLVVG 695 (780)
T ss_dssp HTSCCSSTT---CEEECCCC
T ss_pred cccCcCCCC---CEEEEEEC
Confidence 999998865 58999887
No 64
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.72 E-value=6.5e-18 Score=176.52 Aligned_cols=137 Identities=14% Similarity=0.315 Sum_probs=109.7
Q ss_pred eeEEEEcCCccc-hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHH
Q psy1907 84 VDIYYTKAPEAD-YIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQT 162 (1320)
Q Consensus 84 V~~~y~~~~~~~-~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~ 162 (1320)
++.+|...+..+ +++.+. .+....+++++|||+++.+.++.++..|.+. ++.+..+||+|++.+|.
T Consensus 4 i~~~~~~~~~~~~K~~~l~----~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~ 70 (165)
T 1fuk_A 4 IKQFYVNVEEEEYKYECLT----DLYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQERD 70 (165)
T ss_dssp CEEEEEEEESGGGHHHHHH----HHHHHTTCSCEEEEESSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHH
T ss_pred cEEEEEECCcchhHHHHHH----HHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHH
Confidence 556666655555 444433 3333445789999999999999999999863 67899999999999999
Q ss_pred HHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceE
Q psy1907 163 KIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRG 242 (1320)
Q Consensus 163 ~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~ 242 (1320)
.+++.|+.|..+|||||+++++|+|+|++++||++++ |.+..+|.||+|||||.|.. |.
T Consensus 71 ~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~---g~ 129 (165)
T 1fuk_A 71 TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDL------------------PANKENYIHRIGRGGRFGRK---GV 129 (165)
T ss_dssp HHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSC------------------CSSGGGGGGSSCSCC--------CE
T ss_pred HHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhcccccCCCC---ce
Confidence 9999999999999999999999999999999999887 56778999999999999864 58
Q ss_pred EEEecCHHHHhh
Q psy1907 243 CAHVLGEEVLRG 254 (1320)
Q Consensus 243 ~~~L~~~~~~~~ 254 (1320)
|+.++++++...
T Consensus 130 ~~~~~~~~~~~~ 141 (165)
T 1fuk_A 130 AINFVTNEDVGA 141 (165)
T ss_dssp EEEEEETTTHHH
T ss_pred EEEEEcchHHHH
Confidence 999988765443
No 65
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.72 E-value=1.8e-17 Score=174.69 Aligned_cols=135 Identities=11% Similarity=0.228 Sum_probs=115.1
Q ss_pred cceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHH
Q psy1907 82 FPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQ 161 (1320)
Q Consensus 82 ~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r 161 (1320)
..++.+|...+..++++.+.. +....+++++|||+++...++.++..|... ++.+..+||+|++.+|
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~----ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r 70 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFD----LLDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEER 70 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHH----HHHHSCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHH
T ss_pred CCeEEEEEECChHHHHHHHHH----HHHhCCCCcEEEEECCHHHHHHHHHHHHhc---------CCCEEEEECCCCHHHH
Confidence 346777877777666655433 334445688999999999999999999863 6789999999999999
Q ss_pred HHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCce
Q psy1907 162 TKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFR 241 (1320)
Q Consensus 162 ~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg 241 (1320)
..+++.|++|..+|||||+++++|+|+|++++||++++ |.+.++|.||+|||||.|.. |
T Consensus 71 ~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~------------------p~~~~~~~qr~GR~~R~g~~---g 129 (172)
T 1t5i_A 71 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM------------------PEDSDTYLHRVARAGRFGTK---G 129 (172)
T ss_dssp HHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSC------------------CSSHHHHHHHHHHHTGGGCC---C
T ss_pred HHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECC------------------CCCHHHHHHHhcccccCCCC---c
Confidence 99999999999999999999999999999999999887 56789999999999999865 5
Q ss_pred EEEEecCHH
Q psy1907 242 GCAHVLGEE 250 (1320)
Q Consensus 242 ~~~~L~~~~ 250 (1320)
.|+.+++..
T Consensus 130 ~~~~~~~~~ 138 (172)
T 1t5i_A 130 LAITFVSDE 138 (172)
T ss_dssp EEEEEECSH
T ss_pred EEEEEEcCh
Confidence 899998854
No 66
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.71 E-value=8.5e-18 Score=212.35 Aligned_cols=168 Identities=17% Similarity=0.084 Sum_probs=123.1
Q ss_pred CCCcEEEEecCcCHHHHHhhcCCCCEEEeC----CcccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHH
Q psy1907 49 SDLKLLISSATLDAQKFSEFFDDAPVFRIP----GRRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQE 124 (1320)
Q Consensus 49 ~~~qlIl~SATl~~~~f~~~f~~~~vi~i~----g~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~ 124 (1320)
...|+++||||+....+.. .+ .++... +...|+ + .. .+....++.++..+.... ..++++|||++|+.
T Consensus 385 ~~~q~i~~SAT~~~~~~~~--~~-~~~~~~~r~~~l~~p~-i-~v-~~~~~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~ 456 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH--TD-EMVEQIIRPTGLLDPL-I-DV-RPIEGQIDDLIGEIQARI--ERNERVLVTTLTKK 456 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH--CS-SCEEECCCTTCCCCCE-E-EE-ECSTTHHHHHHHHHHHHH--TTTCEEEEECSSHH
T ss_pred cCCCEEEEecCCChhHHHh--hh-CeeeeeecccCCCCCe-E-EE-ecccchHHHHHHHHHHHH--hcCCeEEEEECCHH
Confidence 3578999999997654332 11 112211 222333 1 11 122333444444333322 23568999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCcccc
Q psy1907 125 EIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNN 204 (1320)
Q Consensus 125 eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~ 204 (1320)
.++.++..|.+. ++.+..+||++++.+|.++++.|++|..+||||||++++|+|+|+|++||+++....
T Consensus 457 ~ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~-- 525 (661)
T 2d7d_A 457 MSEDLTDYLKEI---------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKE-- 525 (661)
T ss_dssp HHHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCC--
T ss_pred HHHHHHHHHHhc---------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccc--
Confidence 999999999873 677888999999999999999999999999999999999999999999999886321
Q ss_pred ccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHH
Q psy1907 205 FNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 205 yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~ 250 (1320)
| -|.|..+|+||+|||||.++| .|+.++++.
T Consensus 526 -----G------~p~s~~~~iQr~GRagR~~~G----~~i~~~~~~ 556 (661)
T 2d7d_A 526 -----G------FLRSERSLIQTIGRAARNAEG----RVIMYADKI 556 (661)
T ss_dssp -----T------TTTSHHHHHHHHHTTTTSTTC----EEEEECSSC
T ss_pred -----c------CCCCHHHHHHHhCcccCCCCC----EEEEEEeCC
Confidence 1 267889999999999999776 788888753
No 67
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.71 E-value=1.8e-18 Score=228.73 Aligned_cols=223 Identities=13% Similarity=0.095 Sum_probs=138.5
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCc-chHHHHHHHHh--------hcCCCCcEEEEecCcCHH-HHH-hhc
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHT-DILFGLVKDIV--------RFRSDLKLLISSATLDAQ-KFS-EFF 69 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~t-d~ll~llk~l~--------~~r~~~qlIl~SATl~~~-~f~-~~f 69 (1320)
+|||+|++.+.. |+++++|||||||. +++. .-+..+++.+. ..++..|++++|||+... .+. .++
T Consensus 161 ~TP~~L~~~l~~---L~~l~~lViDEah~-~l~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~ 236 (1054)
T 1gku_B 161 TTTQFLSKHYRE---LGHFDFIFVDDVDA-ILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELF 236 (1054)
T ss_dssp EEHHHHHHCSTT---SCCCSEEEESCHHH-HHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHH
T ss_pred EcHHHHHHHHHH---hccCCEEEEeChhh-hhhccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHh
Confidence 599999997665 88999999999995 3331 11222222221 113567899999999542 111 222
Q ss_pred CCCCEEEeCCcc---cceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy1907 70 DDAPVFRIPGRR---FPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKE 146 (1320)
Q Consensus 70 ~~~~vi~i~g~~---~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~ 146 (1320)
.+...+.+.+.. .++...+......+.+ ..+.... ++++||||+|+++++.++..|.+ .
T Consensus 237 ~~~~~i~v~~~~~~~~~i~~~~~~~~k~~~L-------~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~---------~- 298 (1054)
T 1gku_B 237 RQLLNFDIGSSRITVRNVEDVAVNDESISTL-------SSILEKL-GTGGIIYARTGEEAEEIYESLKN---------K- 298 (1054)
T ss_dssp HHHHCCCCSCCEECCCCEEEEEESCCCTTTT-------HHHHTTS-CSCEEEEESSHHHHHHHHHTTTT---------S-
T ss_pred hcceEEEccCcccCcCCceEEEechhHHHHH-------HHHHhhc-CCCEEEEEcCHHHHHHHHHHHhh---------c-
Confidence 221122222222 2345555543222222 2222222 57899999999999999988864 2
Q ss_pred eEEEEecCCCCHHHHHHHcCCCCCCCeEEEEe----CcccccCCCCCCc-cEEEcCCCCc-ccccc--------------
Q psy1907 147 LIILPVYSNLPTDMQTKIFLPTPPNARKVVLA----TNIAETSLTIDNI-IYVIDPGFCK-QNNFN-------------- 206 (1320)
Q Consensus 147 ~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvA----TdIAe~gldIp~I-~~VID~g~~k-~~~yd-------------- 206 (1320)
+.+..+||++. .+++.|++|..+|||| ||++++|||||+| ++||++|+++ ...|+
T Consensus 299 ~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~ 373 (1054)
T 1gku_B 299 FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLA 373 (1054)
T ss_dssp SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHH
T ss_pred cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHH
Confidence 67999999984 5566788999999999 9999999999995 9999999983 11111
Q ss_pred ---------------------------------CCCCccccce-----eccCHhhHHHHhhhcCCCCCCC-CceEEEEec
Q psy1907 207 ---------------------------------SRTGMESLTV-----VPISKASANQRAGVITGFNPLS-DFRGCAHVL 247 (1320)
Q Consensus 207 ---------------------------------~~~g~~~l~~-----~piSk~s~~QR~GRAGR~g~g~-~fg~~~~L~ 247 (1320)
+.-+...+.. ...+..+|+||+|||||.|+|. .-|.||.+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~ 453 (1054)
T 1gku_B 374 YLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLE 453 (1054)
T ss_dssp TTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEe
Confidence 1111111111 1248999999999999987652 235777777
Q ss_pred CHH
Q psy1907 248 GEE 250 (1320)
Q Consensus 248 ~~~ 250 (1320)
++.
T Consensus 454 ~d~ 456 (1054)
T 1gku_B 454 DDS 456 (1054)
T ss_dssp SCH
T ss_pred cCH
Confidence 644
No 68
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.70 E-value=2.1e-17 Score=177.34 Aligned_cols=149 Identities=13% Similarity=0.092 Sum_probs=110.2
Q ss_pred hhcCCCCEEEeCCc---ccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCC
Q psy1907 67 EFFDDAPVFRIPGR---RFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSK 143 (1320)
Q Consensus 67 ~~f~~~~vi~i~g~---~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~ 143 (1320)
.|+.++..+.+... ...+...|...+..+++..+. .+.... ++++|||++++..++.++..|...
T Consensus 10 ~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~----~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~------- 77 (191)
T 2p6n_A 10 GVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLL----ECLQKT-PPPVLIFAEKKADVDAIHEYLLLK------- 77 (191)
T ss_dssp ------------------CCSEEEEEECCGGGHHHHHH----HHHTTS-CSCEEEECSCHHHHHHHHHHHHHH-------
T ss_pred cccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHH----HHHHhC-CCCEEEEECCHHHHHHHHHHHHHc-------
Confidence 45555555555322 234666676666666655433 333333 568999999999999999999863
Q ss_pred CCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhh
Q psy1907 144 IKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKAS 223 (1320)
Q Consensus 144 ~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s 223 (1320)
++.+..+||+|++.+|..+++.|++|..+|||||+++++|||+|++++||++++ |.+.++
T Consensus 78 --g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~------------------p~~~~~ 137 (191)
T 2p6n_A 78 --GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDM------------------PEEIEN 137 (191)
T ss_dssp --TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSC------------------CSSHHH
T ss_pred --CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCC------------------CCCHHH
Confidence 678999999999999999999999999999999999999999999999999886 567899
Q ss_pred HHHHhhhcCCCCCCCCceEEEEecCHH
Q psy1907 224 ANQRAGVITGFNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 224 ~~QR~GRAGR~g~g~~fg~~~~L~~~~ 250 (1320)
|.||+|||||.|.. |.|+.+++..
T Consensus 138 ~~qr~GR~gR~g~~---g~~i~l~~~~ 161 (191)
T 2p6n_A 138 YVHRIGRTGCSGNT---GIATTFINKA 161 (191)
T ss_dssp HHHHHTTSCC---C---CEEEEEECTT
T ss_pred HHHHhCccccCCCC---cEEEEEEcCc
Confidence 99999999999865 5899998854
No 69
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.70 E-value=1.9e-17 Score=176.57 Aligned_cols=140 Identities=14% Similarity=0.110 Sum_probs=104.3
Q ss_pred cceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHH
Q psy1907 82 FPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQ 161 (1320)
Q Consensus 82 ~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r 161 (1320)
..+...|...+..++++.+...+.. ..+.+++|||+++...++.++..|.. .++.+..+||+|++.+|
T Consensus 18 ~~i~q~~~~v~~~~K~~~L~~ll~~---~~~~~k~lVF~~~~~~~~~l~~~L~~---------~g~~~~~lhg~~~~~~r 85 (185)
T 2jgn_A 18 ENITQKVVWVEESDKRSFLLDLLNA---TGKDSLTLVFVETKKGADSLEDFLYH---------EGYACTSIHGDRSQRDR 85 (185)
T ss_dssp TTEEEEEEECCGGGHHHHHHHHHHH---C-CCSCEEEEESCHHHHHHHHHHHHH---------TTCCEEEEC--------
T ss_pred CCceEEEEEeCcHHHHHHHHHHHHh---cCCCCeEEEEECCHHHHHHHHHHHHH---------cCCceEEEeCCCCHHHH
Confidence 3567777777777776655444332 22467899999999999999999986 36789999999999999
Q ss_pred HHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCce
Q psy1907 162 TKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFR 241 (1320)
Q Consensus 162 ~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg 241 (1320)
..+++.|+.|..+|||||+++++|+|+|++++||++++ |.+.++|.||+|||||.|.. |
T Consensus 86 ~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~------------------p~s~~~~~Qr~GR~~R~g~~---g 144 (185)
T 2jgn_A 86 EEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDL------------------PSDIEEYVHRIGRTGRVGNL---G 144 (185)
T ss_dssp CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSC------------------CSSHHHHHHHHTTBCCTTSC---E
T ss_pred HHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHccccCCCCCC---c
Confidence 99999999999999999999999999999999999876 56789999999999999865 6
Q ss_pred EEEEecCHHHHhh
Q psy1907 242 GCAHVLGEEVLRG 254 (1320)
Q Consensus 242 ~~~~L~~~~~~~~ 254 (1320)
.|+.++++.+...
T Consensus 145 ~~~~~~~~~~~~~ 157 (185)
T 2jgn_A 145 LATSFFNERNINI 157 (185)
T ss_dssp EEEEEECGGGGGG
T ss_pred EEEEEEchhhHHH
Confidence 9999999775443
No 70
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.69 E-value=4.4e-17 Score=205.98 Aligned_cols=167 Identities=15% Similarity=0.032 Sum_probs=123.0
Q ss_pred CCcEEEEecCcCHHHHHhhcCCCCEEEeC----CcccceeEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHH
Q psy1907 50 DLKLLISSATLDAQKFSEFFDDAPVFRIP----GRRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEE 125 (1320)
Q Consensus 50 ~~qlIl~SATl~~~~f~~~f~~~~vi~i~----g~~~pV~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~e 125 (1320)
..|+++||||.....+.. ...++... |...|. ... .+....++.++..+..... .++++|||++|+..
T Consensus 380 ~~q~i~~SAT~~~~~~~~---~~~~~~~~~r~~~l~~p~--i~v-~~~~~~~~~Ll~~l~~~~~--~~~~vlVf~~t~~~ 451 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH---SGRVVEQIIRPTGLLDPL--VRV-KPTENQILDLMEGIRERAA--RGERTLVTVLTVRM 451 (664)
T ss_dssp CSEEEEEESSCCHHHHHH---CSEEEEECSCTTCCCCCE--EEE-ECSTTHHHHHHHHHHHHHH--TTCEEEEECSSHHH
T ss_pred cCCEEEEecCCCHHHHHh---hhCeeeeeeccCCCCCCe--EEE-ecccchHHHHHHHHHHHHh--cCCEEEEEECCHHH
Confidence 578999999997654432 11122222 222232 111 1223334444444333322 25689999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccc
Q psy1907 126 IETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNF 205 (1320)
Q Consensus 126 ie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~y 205 (1320)
++.++..|.+. ++.+..+||++++.+|..+++.|+.|..+||||||++++|+|+|+|++||+++..+.
T Consensus 452 ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~--- 519 (664)
T 1c4o_A 452 AEELTSFLVEH---------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKE--- 519 (664)
T ss_dssp HHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSC---
T ss_pred HHHHHHHHHhc---------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCccc---
Confidence 99999999873 677888999999999999999999999999999999999999999999999886322
Q ss_pred cCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHH
Q psy1907 206 NSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 206 d~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~ 250 (1320)
| -|.|..+|+||+|||||.++| .|+.+++..
T Consensus 520 ----G------~p~s~~~~iQr~GRagR~~~G----~~i~~~~~~ 550 (664)
T 1c4o_A 520 ----G------FLRSERSLIQTIGRAARNARG----EVWLYADRV 550 (664)
T ss_dssp ----S------GGGSHHHHHHHHGGGTTSTTC----EEEEECSSC
T ss_pred ----C------CCCCHHHHHHHHCccCcCCCC----EEEEEEcCC
Confidence 1 267889999999999999876 788888753
No 71
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.67 E-value=2.2e-16 Score=198.13 Aligned_cols=123 Identities=20% Similarity=0.112 Sum_probs=99.6
Q ss_pred cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCe
Q psy1907 94 ADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNAR 173 (1320)
Q Consensus 94 ~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~ 173 (1320)
.++..+++..+...+. .+..+|||++|.+.++.++..|.+. ++.+..|||++.+.++..+.+.+++|
T Consensus 424 ~~K~~al~~~i~~~~~--~gqpvLVft~sie~se~Ls~~L~~~---------gi~~~vLnak~~~rEa~iia~agr~G-- 490 (853)
T 2fsf_A 424 AEKIQAIIEDIKERTA--KGQPVLVGTISIEKSELVSNELTKA---------GIKHNVLNAKFHANEAAIVAQAGYPA-- 490 (853)
T ss_dssp HHHHHHHHHHHHHHHT--TTCCEEEEESSHHHHHHHHHHHHHT---------TCCCEECCTTCHHHHHHHHHTTTSTT--
T ss_pred HHHHHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHHC---------CCCEEEecCChhHHHHHHHHhcCCCC--
Confidence 3444554444444332 2456999999999999999999873 78889999999999988888999888
Q ss_pred EEEEeCcccccCCCCCC--------------------------------c-----cEEEcCCCCccccccCCCCccccce
Q psy1907 174 KVVLATNIAETSLTIDN--------------------------------I-----IYVIDPGFCKQNNFNSRTGMESLTV 216 (1320)
Q Consensus 174 kVlvATdIAe~gldIp~--------------------------------I-----~~VID~g~~k~~~yd~~~g~~~l~~ 216 (1320)
.|+||||+|+||+||+. | .|||++++
T Consensus 491 ~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~----------------- 553 (853)
T 2fsf_A 491 AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTER----------------- 553 (853)
T ss_dssp CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSC-----------------
T ss_pred eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccC-----------------
Confidence 59999999999999987 4 59999987
Q ss_pred eccCHhhHHHHhhhcCCCCCCCCceEEEEecCHH
Q psy1907 217 VPISKASANQRAGVITGFNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 217 ~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~ 250 (1320)
|-|...|.||.|||||.|.. |.+..+.+.+
T Consensus 554 -pes~riy~qr~GRTGRqGd~---G~s~~fls~e 583 (853)
T 2fsf_A 554 -HESRRIDNQLRGRSGRQGDA---GSSRFYLSME 583 (853)
T ss_dssp -CSSHHHHHHHHTTSSGGGCC---EEEEEEEETT
T ss_pred -CCCHHHHHhhccccccCCCC---eeEEEEeccc
Confidence 66788999999999999875 5777666644
No 72
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.65 E-value=3.9e-16 Score=195.16 Aligned_cols=227 Identities=14% Similarity=0.109 Sum_probs=140.0
Q ss_pred CHHHHHHHHcCCC-----CCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcC---HHHHHhhcCCCC
Q psy1907 2 TDGTLHREFLSEP-----DLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLD---AQKFSEFFDDAP 73 (1320)
Q Consensus 2 T~G~LLr~l~~d~-----~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~---~~~f~~~f~~~~ 73 (1320)
|+++|........ ...++++||||||| |....+ ....+.+....+..++++||||.. ...+..+|+. +
T Consensus 281 T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH-~~~~~~--~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~-~ 356 (590)
T 3h1t_A 281 IYQSIASDERRPGLYKEFPQDFFDLIIIDECH-RGSARD--NSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFGN-P 356 (590)
T ss_dssp EGGGC------CCGGGGSCTTSCSEEEESCCC------------CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCS-C
T ss_pred EhhhhccccccccccccCCCCccCEEEEECCc-cccccc--hHHHHHHHHhCCcceEEEeccccccccchhHHHHcCC-c
Confidence 6677666543211 25679999999999 444321 123333444345578999999983 2446677754 3
Q ss_pred EEEeC-------CcccceeEEEEcCC--------------------------cc---------chHHHHHHHHHHHH-hh
Q psy1907 74 VFRIP-------GRRFPVDIYYTKAP--------------------------EA---------DYIDACVVSILQIH-AT 110 (1320)
Q Consensus 74 vi~i~-------g~~~pV~~~y~~~~--------------------------~~---------~~l~~~i~~v~~i~-~~ 110 (1320)
+.... |...|......... .. .........+.... ..
T Consensus 357 ~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~ 436 (590)
T 3h1t_A 357 IYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRT 436 (590)
T ss_dssp SEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred eEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc
Confidence 33321 11222222111100 00 01112222232222 23
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeE---EEEeCcccccCCC
Q psy1907 111 QPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARK---VVLATNIAETSLT 187 (1320)
Q Consensus 111 ~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~k---VlvATdIAe~gld 187 (1320)
.+.+++|||++++..++.++..|.+.........+. .+..+||++++ +|..+++.|++|..+ ||+||+++++|||
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~-~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiD 514 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPD-YVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVD 514 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTT-SEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCC-eEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCcc
Confidence 445789999999999999999998764332222222 36778999764 688899999887655 8999999999999
Q ss_pred CCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCC--CCCceEEEEec-CHHHH
Q psy1907 188 IDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNP--LSDFRGCAHVL-GEEVL 252 (1320)
Q Consensus 188 Ip~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~--g~~fg~~~~L~-~~~~~ 252 (1320)
+|++++||.++. |-|...|.||+||+||.++ |+.++..|-+. ...++
T Consensus 515 ip~v~~Vi~~~~------------------~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~g~~~~~ 564 (590)
T 3h1t_A 515 APTCKNVVLARV------------------VNSMSEFKQIVGRGTRLREDYGKLWFNIIDYTGSATQN 564 (590)
T ss_dssp CTTEEEEEEESC------------------CCCHHHHHHHHTTSCCCBGGGTBSCEEEEECSSSHHHH
T ss_pred chheeEEEEEec------------------CCChHHHHHHHhhhcccCccCCCCEEEEEecCCcHHHH
Confidence 999999998655 5577899999999999988 87777777776 44433
No 73
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.65 E-value=5.4e-16 Score=194.75 Aligned_cols=121 Identities=19% Similarity=0.055 Sum_probs=98.1
Q ss_pred chHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeE
Q psy1907 95 DYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARK 174 (1320)
Q Consensus 95 ~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~k 174 (1320)
++..+++..+...+.. +..+|||++|.+.++.++..|.+. ++.+..|||++.+.++..+.+.+++| .
T Consensus 444 ~K~~al~~~i~~~~~~--gqpvLVft~Sie~sE~Ls~~L~~~---------Gi~~~vLnak~~~rEa~iia~agr~G--~ 510 (922)
T 1nkt_A 444 AKYIAVVDDVAERYAK--GQPVLIGTTSVERSEYLSRQFTKR---------RIPHNVLNAKYHEQEATIIAVAGRRG--G 510 (922)
T ss_dssp HHHHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHHHHHT---------TCCCEEECSSCHHHHHHHHHTTTSTT--C
T ss_pred HHHHHHHHHHHHHHhc--CCcEEEEECCHHHHHHHHHHHHHC---------CCCEEEecCChhHHHHHHHHhcCCCC--e
Confidence 3455555555444433 346999999999999999999873 78889999999888888888888888 5
Q ss_pred EEEeCcccccCCCCCCc----------------------------------------------------cEEEcCCCCcc
Q psy1907 175 VVLATNIAETSLTIDNI----------------------------------------------------IYVIDPGFCKQ 202 (1320)
Q Consensus 175 VlvATdIAe~gldIp~I----------------------------------------------------~~VID~g~~k~ 202 (1320)
|+||||+|+||+||+.+ .|||++++
T Consensus 511 VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~--- 587 (922)
T 1nkt_A 511 VTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTER--- 587 (922)
T ss_dssp EEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSC---
T ss_pred EEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccC---
Confidence 99999999999999975 49999887
Q ss_pred ccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCH
Q psy1907 203 NNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGE 249 (1320)
Q Consensus 203 ~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~ 249 (1320)
|-|...|.||.||+||.|.. |.+..+.+.
T Consensus 588 ---------------pes~riy~qr~GRTGRqGdp---G~s~fflSl 616 (922)
T 1nkt_A 588 ---------------HESRRIDNQLRGRSGRQGDP---GESRFYLSL 616 (922)
T ss_dssp ---------------CSSHHHHHHHHHTSSGGGCC---EEEEEEEET
T ss_pred ---------------CCCHHHHHHHhcccccCCCC---eeEEEEech
Confidence 66788999999999999875 566666654
No 74
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.63 E-value=9e-17 Score=195.13 Aligned_cols=116 Identities=9% Similarity=0.067 Sum_probs=97.2
Q ss_pred HHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCccc
Q psy1907 103 SILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIA 182 (1320)
Q Consensus 103 ~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIA 182 (1320)
.+..+....+++++|||+++.+.++.+++.|. +..+||++++.+|.++++.|++|..+|||||+++
T Consensus 339 ~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~--------------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~ 404 (472)
T 2fwr_A 339 KLREILERHRKDKIIIFTRHNELVYRISKVFL--------------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVL 404 (472)
T ss_dssp HHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCC
T ss_pred HHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCch
Confidence 34444444557899999999999998887662 4468999999999999999999999999999999
Q ss_pred ccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHH
Q psy1907 183 ETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 183 e~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~ 250 (1320)
++|+|+|++++||+++. |-|...+.||+|||||.|+|+-...+|.+.++.
T Consensus 405 ~~Gldlp~~~~Vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 405 DEGIDVPDANVGVIMSG------------------SGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp CSSSCSCCBSEEEEECC------------------SSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred hcCcccccCcEEEEECC------------------CCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 99999999999998765 456789999999999999883345778777754
No 75
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.43 E-value=2.1e-17 Score=173.53 Aligned_cols=121 Identities=12% Similarity=0.126 Sum_probs=104.2
Q ss_pred HHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccc
Q psy1907 104 ILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAE 183 (1320)
Q Consensus 104 v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe 183 (1320)
+..+....+++++|||++++..++.++..|... ++.+..+||+|++.+|..+++.|++|..+|||||++++
T Consensus 21 l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 91 (170)
T 2yjt_D 21 LVHLLKQPEATRSIVFVRKRERVHELANWLREA---------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAA 91 (170)
Confidence 333444445678999999999999999999763 67899999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHHHhh
Q psy1907 184 TSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEVLRG 254 (1320)
Q Consensus 184 ~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~~~ 254 (1320)
+|+|+|++++||++++ |.|..+|.||+|||||.|.. |.|+.+++..+...
T Consensus 92 ~Gid~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g~~---g~~~~~~~~~~~~~ 141 (170)
T 2yjt_D 92 RGIDIPDVSHVFNFDM------------------PRSGDTYLHRIGRTARAGRK---GTAISLVEAHDHLL 141 (170)
Confidence 9999999999999886 56778999999999999864 57888888765433
No 76
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.60 E-value=1.4e-15 Score=186.52 Aligned_cols=210 Identities=12% Similarity=0.118 Sum_probs=132.5
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHH-----HHHhhcCCCCEE
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQ-----KFSEFFDDAPVF 75 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~-----~f~~~f~~~~vi 75 (1320)
+|++.|++. ....+.++++|||||+|.-. . ..+.+.+...++..++++||||+... .+..+|+ ..++
T Consensus 210 ~T~~~l~~~--~~~~~~~~~liIiDE~H~~~-~----~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~-~~~~ 281 (510)
T 2oca_A 210 GTWQTVVKQ--PKEWFSQFGMMMNDECHLAT-G----KSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFG-EIFK 281 (510)
T ss_dssp EEHHHHTTS--CGGGGGGEEEEEEETGGGCC-H----HHHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHC-SEEC
T ss_pred EeHHHHhhc--hhhhhhcCCEEEEECCcCCC-c----ccHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhC-CeEE
Confidence 377765432 11347899999999999532 2 12222233455677899999999322 1333443 2222
Q ss_pred EeCC-------cccceeEE--EEcCCc--------cchHH-------------HHHHHHHHHHhhCCCCCEEEEcCCHHH
Q psy1907 76 RIPG-------RRFPVDIY--YTKAPE--------ADYID-------------ACVVSILQIHATQPLGDILVFLTGQEE 125 (1320)
Q Consensus 76 ~i~g-------~~~pV~~~--y~~~~~--------~~~l~-------------~~i~~v~~i~~~~~~g~iLVFl~t~~e 125 (1320)
.++. ...|..+. ....+. ..|-. .....+.... ......+|||++ .++
T Consensus 282 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~ivf~~-~~~ 359 (510)
T 2oca_A 282 PVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLA-QKDENAFVMFKH-VSH 359 (510)
T ss_dssp CCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHH-TTTCEEEEEESS-HHH
T ss_pred eeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHH-hcCCCeEEEEec-HHH
Confidence 2221 11122211 111111 11111 1112222222 222344566666 888
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeC-cccccCCCCCCccEEEcCCCCcccc
Q psy1907 126 IETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLAT-NIAETSLTIDNIIYVIDPGFCKQNN 204 (1320)
Q Consensus 126 ie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvAT-dIAe~gldIp~I~~VID~g~~k~~~ 204 (1320)
++.+++.|.+. +..+..+||++++.+|.++++.|.+|..+||||| +++++|+|+|++++||.++.
T Consensus 360 ~~~l~~~L~~~---------~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~----- 425 (510)
T 2oca_A 360 GKAIFDLIKNE---------YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHG----- 425 (510)
T ss_dssp HHHHHHHHHTT---------CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSC-----
T ss_pred HHHHHHHHHHc---------CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCC-----
Confidence 88888877652 2368899999999999999999999999999999 99999999999999998765
Q ss_pred ccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEec
Q psy1907 205 FNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVL 247 (1320)
Q Consensus 205 yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~ 247 (1320)
|.|.+++.||+||+||.|.++.....|.+.
T Consensus 426 -------------~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~ 455 (510)
T 2oca_A 426 -------------VKSKIIVLQTIGRVLRKHGSKTIATVWDLI 455 (510)
T ss_dssp -------------CCSCCHHHHHHHHHHTTTCCCCCCEEEEEE
T ss_pred -------------CCCHHHHHHHHhcccccCCCCceEEEEEee
Confidence 446689999999999999985222344333
No 77
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.56 E-value=9.7e-15 Score=173.10 Aligned_cols=128 Identities=16% Similarity=0.106 Sum_probs=101.8
Q ss_pred hccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCC-CCcEEEEecccHHHHHHHHHHHHHHhCCCCC
Q psy1907 666 KKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTK-DKMKIGCTQPRRVAAMSVSARVAEEMGVKLG 744 (1320)
Q Consensus 666 r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~-~~~~I~~tQPRRvAA~svA~rva~e~~~~lG 744 (1320)
+.-.+.+++..+.+.++.+++.++|+++||||||++....+++.-... .+.+++++.|+|..|..+++++.. ++...|
T Consensus 58 ~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~ 136 (414)
T 3eiq_A 58 YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMA-LGDYMG 136 (414)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH-HGGGSC
T ss_pred cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHH-HhcccC
Confidence 445567788888899999999999999999999999988888754332 345799999999999999888766 444556
Q ss_pred CeeeEEeecCcc-------CCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 745 CEVGYAIRFEDC-------TSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 745 ~~VGY~irfe~~-------~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
..++..+...+. ....+.|+++|.|.|++.+..+. .+..+++|||||||+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~ 194 (414)
T 3eiq_A 137 ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE 194 (414)
T ss_dssp CCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH
T ss_pred ceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHH
Confidence 666665554432 23567899999999999998876 578899999999995
No 78
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.56 E-value=9.4e-15 Score=176.37 Aligned_cols=160 Identities=22% Similarity=0.285 Sum_probs=128.7
Q ss_pred HHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecC-ccCCC
Q psy1907 681 AVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFE-DCTSE 759 (1320)
Q Consensus 681 ~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe-~~~s~ 759 (1320)
++.+++.++|+|+||||||+.....+++.... ++.+++++.|+|..|..+++.+. |-.|+|+.+.- ...++
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-~~~~~lil~Ptr~La~Q~~~~l~-------~~~v~~~~~~~~~v~Tp 75 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-RRLRTLVLAPTRVVLSEMKEAFH-------GLDVKFHTQAFSAHGSG 75 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT-------TSCEEEESSCCCCCCCS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-cCCeEEEEcchHHHHHHHHHHHh-------cCCeEEecccceeccCC
Confidence 45678999999999999999853333321111 23458888899998888777664 34577877653 46677
Q ss_pred CccEEEEccHHHHHHHhcCCCCCCccEEEEcccccc--------------------------------------------
Q psy1907 760 RTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPK-------------------------------------------- 795 (1320)
Q Consensus 760 ~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER-------------------------------------------- 795 (1320)
...+.++++|.+.+.++.++.+.++++|||||+|+.
T Consensus 76 ~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~ 155 (440)
T 1yks_A 76 REVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATPPGTSDEFPHSNGEIE 155 (440)
T ss_dssp SCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCCSSCEE
T ss_pred ccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhhcCCCee
Confidence 888999999999999999999999999999999973
Q ss_pred --------------------------------------------------------------------------------
Q psy1907 796 -------------------------------------------------------------------------------- 795 (1320)
Q Consensus 796 -------------------------------------------------------------------------------- 795 (1320)
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~v~e~ 235 (440)
T 1yks_A 156 DVQTDIPSEPWNTGHDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATDIAEM 235 (440)
T ss_dssp EEECCCCSSCCSSSCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEESSSTTC
T ss_pred EeeeccChHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecchhHHHHHhhhcCCCceEEEECChhhe
Confidence
Q ss_pred ------eEEEcCCccceeec-cCCCCcceeEEEEecHhhHHHHhcccCCc--cCCeEEEecc
Q psy1907 796 ------VYVIDPGFCKQNNF-NSRTGMESLTVVPISKASANQRAGRAGRV--AAGKCFRLYT 848 (1320)
Q Consensus 796 ------~~ViD~G~~k~~~y-~~~~~~~~L~~~~iSkasa~QR~GRAGR~--~pG~cyrLyt 848 (1320)
.+|||+|+.+.+.| ++.++|......|.|.++..||+|||||. .+|.||.+|+
T Consensus 236 GiDipv~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 236 GANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp CTTCCCSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred eeccCceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 47999999888887 55556777778899999999999999997 4899999985
No 79
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.4e-14 Score=191.99 Aligned_cols=119 Identities=18% Similarity=0.281 Sum_probs=104.6
Q ss_pred ccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCe
Q psy1907 667 KSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCE 746 (1320)
Q Consensus 667 ~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~ 746 (1320)
...+.+++..+.+.++.+++.++|+|+||||||++....+++.. ..+++++++.|+|..|...+.++.+.++ .
T Consensus 181 ~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l--~~g~rvlvl~PtraLa~Q~~~~l~~~~~-----~ 253 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL--KNKQRVIYTSPIKALSNQKYRELLAEFG-----D 253 (1108)
T ss_dssp CSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHH--HTTCEEEEEESSHHHHHHHHHHHHHHTS-----S
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHH--hcCCeEEEEcCcHHHHHHHHHHHHHHhC-----C
Confidence 45667888999999999999999999999999999888777653 2345799999999999999999999876 5
Q ss_pred eeEEeecCccCCCCccEEEEccHHHHHHHhcCCC-CCCccEEEEcccc
Q psy1907 747 VGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPD-LASYSVMIIDEAH 793 (1320)
Q Consensus 747 VGY~irfe~~~s~~T~i~y~TdG~Llrel~~dp~-L~~ys~iIiDE~H 793 (1320)
||+ +.++...++++.|++||.|+|++.+..++. +.++++|||||||
T Consensus 254 Vgl-ltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH 300 (1108)
T 3l9o_A 254 VGL-MTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH 300 (1108)
T ss_dssp EEE-ECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG
T ss_pred ccE-EeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhh
Confidence 888 666777788899999999999999998875 8899999999999
No 80
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.52 E-value=1.3e-14 Score=182.98 Aligned_cols=119 Identities=24% Similarity=0.417 Sum_probs=86.1
Q ss_pred hccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHH-HHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCC
Q psy1907 666 KKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQI-PQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLG 744 (1320)
Q Consensus 666 r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqv-Pq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG 744 (1320)
|..++|..... .+++.+++.++|+|+||||||+.. +.+|.... ..+.+++|+.|+|..|..+++++. |
T Consensus 224 r~~~aIp~~l~--~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~--~~~~~~lilaPTr~La~Q~~~~l~-------~ 292 (673)
T 2wv9_A 224 RVEEPVPEAYN--PEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAI--QKRLRTAVLAPTRVVAAEMAEALR-------G 292 (673)
T ss_dssp ------CCCCC--GGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHH--HTTCCEEEEESSHHHHHHHHHHTT-------T
T ss_pred ccccchHHHhh--HHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH--hCCCcEEEEccHHHHHHHHHHHHh-------c
Confidence 44455554432 456678999999999999999984 55543311 123468889999998888777664 2
Q ss_pred CeeeEEeec-CccCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEcccccc
Q psy1907 745 CEVGYAIRF-EDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPK 795 (1320)
Q Consensus 745 ~~VGY~irf-e~~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER 795 (1320)
-.|+|.++- ....++.+.+.+++.|.+.+.++.++.+.++++|||||||+.
T Consensus 293 ~~i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~ 344 (673)
T 2wv9_A 293 LPVRYLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFT 344 (673)
T ss_dssp SCCEECCC---CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCC
T ss_pred CCeeeecccccccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCccc
Confidence 246676653 336677889999999999999999999999999999999974
No 81
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.50 E-value=5.9e-14 Score=172.97 Aligned_cols=165 Identities=18% Similarity=0.102 Sum_probs=123.4
Q ss_pred CcEEEEecCc--CHHHHHhhcCCCCEEEeCCcccceeEE---EEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHH
Q psy1907 51 LKLLISSATL--DAQKFSEFFDDAPVFRIPGRRFPVDIY---YTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEE 125 (1320)
Q Consensus 51 ~qlIl~SATl--~~~~f~~~f~~~~vi~i~g~~~pV~~~---y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~e 125 (1320)
.++..||+|. ..+.|.+.+ +..++.||...-...+. ..-....++..+.+..+...+.. +..+|||++|++.
T Consensus 410 ~kL~GMTGTa~te~~Ef~~iY-~l~vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~--gqpVLVFt~S~e~ 486 (822)
T 3jux_A 410 EKLAGMTGTAKTEESEFVQVY-GMEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKK--GQPVLVGTTSIEK 486 (822)
T ss_dssp SEEEEEESSCGGGHHHHHHHS-CCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHH--TCCEEEEESSHHH
T ss_pred hHHeEECCCCchHHHHHHHHh-CCeEEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHHhhC--CCCEEEEECCHHH
Confidence 4789999999 446677777 56788887532211111 11223456667766666665544 3569999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCcccccCCCCC--------CccEEEcC
Q psy1907 126 IETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTID--------NIIYVIDP 197 (1320)
Q Consensus 126 ie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATdIAe~gldIp--------~I~~VID~ 197 (1320)
++.++..|.+ .++....|||+..+.++..+...+++| .|+||||+|+||+||+ |+.+||++
T Consensus 487 sE~Ls~~L~~---------~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInt 555 (822)
T 3jux_A 487 SELLSSMLKK---------KGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGT 555 (822)
T ss_dssp HHHHHHHHHT---------TTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEES
T ss_pred HHHHHHHHHH---------CCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEec
Confidence 9999999986 378889999996666665555566666 5999999999999998 77899999
Q ss_pred CCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHH
Q psy1907 198 GFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 198 g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~ 250 (1320)
++ |-|...|.||.|||||.|.. |.++.+.+.+
T Consensus 556 e~------------------Pes~r~y~qriGRTGRqG~~---G~a~~fvsle 587 (822)
T 3jux_A 556 ER------------------HESRRIDNQLRGRAGRQGDP---GESIFFLSLE 587 (822)
T ss_dssp SC------------------CSSHHHHHHHHTTSSCSSCC---CEEEEEEETT
T ss_pred CC------------------CCCHHHHHHhhCccccCCCC---eeEEEEechh
Confidence 87 66788999999999999864 4777776644
No 82
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.50 E-value=9.9e-15 Score=191.77 Aligned_cols=119 Identities=15% Similarity=0.193 Sum_probs=92.3
Q ss_pred CChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeE
Q psy1907 670 PIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGY 749 (1320)
Q Consensus 670 Pi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY 749 (1320)
+..++..+++.++.+++.++|+|+||||||+. .++...... ..+.+++|+.|+|..|..++.++.+.++ |..||.
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv-~~~~i~~~~-~~g~~vlvl~PtraLa~Q~~~~l~~~~~---~~~v~~ 113 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVV-AEYAIAMAH-RNMTKTIYTSPIKALSNQKFRDFKETFD---DVNIGL 113 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHH-HHHHHHHHH-HTTCEEEEEESCGGGHHHHHHHHHTTC-----CCEEE
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHH-HHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHHcC---CCeEEE
Confidence 35778889999999999999999999999973 333222111 2345799999999999999999988653 445665
Q ss_pred EeecCccCCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 750 AIRFEDCTSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 750 ~irfe~~~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
-. .+...+..+.|+|||.|+|++.+..++ .+.++++|||||||.
T Consensus 114 l~-G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~ 158 (997)
T 4a4z_A 114 IT-GDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHY 158 (997)
T ss_dssp EC-SSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTC
T ss_pred Ee-CCCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECccc
Confidence 33 344556779999999999999987766 588999999999994
No 83
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.47 E-value=1.1e-13 Score=160.66 Aligned_cols=122 Identities=18% Similarity=0.174 Sum_probs=90.4
Q ss_pred hhhHHHHHHHHHhC-CEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEE
Q psy1907 672 YPFKQDLIDAVRDH-QVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYA 750 (1320)
Q Consensus 672 ~~~~~~il~~i~~~-~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~ 750 (1320)
+++..+.+..+.++ +.++|.|+||||||++....+++......+.++++..|+|..|..+++++....+. .+-.|+..
T Consensus 30 ~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~v~~~ 108 (367)
T 1hv8_A 30 TDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGN-KNLKIAKI 108 (367)
T ss_dssp CHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCS-SCCCEEEE
T ss_pred CHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCC-CCceEEEE
Confidence 44555566666555 79999999999999998888777654445567999999999999999998876653 23333322
Q ss_pred eecCcc-----CCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 751 IRFEDC-----TSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 751 irfe~~-----~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
....+. ...+..|+++|.|.|++.+.... .+.++++|||||||.
T Consensus 109 ~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 109 YGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE 158 (367)
T ss_dssp CTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHH
T ss_pred ECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchH
Confidence 221111 11257899999999999987765 589999999999995
No 84
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.47 E-value=4e-13 Score=158.96 Aligned_cols=123 Identities=18% Similarity=0.155 Sum_probs=96.3
Q ss_pred hhhHHHHHHHHHhC--CEEEEEcCCCCchhcHHHHHHHHccCCC-CCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeee
Q psy1907 672 YPFKQDLIDAVRDH--QVLIIEGETGSGKTTQIPQYLHEAGFTK-DKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVG 748 (1320)
Q Consensus 672 ~~~~~~il~~i~~~--~v~ii~geTGsGKTTqvPq~l~e~~~~~-~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VG 748 (1320)
+++..+.+..+.++ +.++|+++||||||......+++.-... .+.++++..|+|..|..+++++.+......+..|+
T Consensus 49 ~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 128 (412)
T 3fht_A 49 SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLA 128 (412)
T ss_dssp CHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEE
T ss_pred CHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEE
Confidence 45566777777765 8999999999999999777776654332 23479999999999999999887765544577888
Q ss_pred EEeecCccCC---CCccEEEEccHHHHHHHhcCC--CCCCccEEEEccccc
Q psy1907 749 YAIRFEDCTS---ERTIIKYMTDGTLHREFLSEP--DLASYSVMIIDEAHP 794 (1320)
Q Consensus 749 Y~irfe~~~s---~~T~i~y~TdG~Llrel~~dp--~L~~ys~iIiDE~HE 794 (1320)
+.++..+... ....|+++|.|.|++.+.... .+.++++|||||||.
T Consensus 129 ~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~ 179 (412)
T 3fht_A 129 YAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 179 (412)
T ss_dssp EECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHH
T ss_pred EeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHH
Confidence 8877655433 357899999999999987754 458999999999993
No 85
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.45 E-value=6.5e-14 Score=184.07 Aligned_cols=123 Identities=11% Similarity=0.093 Sum_probs=102.6
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCC--eEEEEe
Q psy1907 101 VVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNA--RKVVLA 178 (1320)
Q Consensus 101 i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~--~kVlvA 178 (1320)
...+..+....+++++|||++++..++.++..|.+. .++.+..+||+|++.+|.++++.|+.|. .+||||
T Consensus 491 ~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~--------~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLva 562 (968)
T 3dmq_A 491 VEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER--------EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLC 562 (968)
T ss_dssp HHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT--------TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEEC
T ss_pred HHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH--------cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEe
Confidence 344445555566789999999999999999998753 3678999999999999999999999997 999999
Q ss_pred CcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHH
Q psy1907 179 TNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 179 TdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~ 250 (1320)
|+++++|||+|++++||+++. |-+.+.|.||+||+||.|..+. ..+|.++.+.
T Consensus 563 T~v~~~GlDl~~~~~VI~~d~------------------p~~~~~~~Q~~GR~~R~Gq~~~-v~v~~~~~~~ 615 (968)
T 3dmq_A 563 SEIGSEGRNFQFASHMVMFDL------------------PFNPDLLEQRIGRLDRIGQAHD-IQIHVPYLEK 615 (968)
T ss_dssp SCCTTCSSCCTTCCEEECSSC------------------CSSHHHHHHHHHTTSCSSSCSC-CEEEEEEETT
T ss_pred cchhhcCCCcccCcEEEEecC------------------CCCHHHHHHHhhccccCCCCce-EEEEEecCCC
Confidence 999999999999999999876 5577899999999999987632 2455555543
No 86
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.42 E-value=7.3e-13 Score=155.43 Aligned_cols=123 Identities=18% Similarity=0.207 Sum_probs=94.3
Q ss_pred ChhhHHHHHHHHHhC--CEEEEEcCCCCchhcHHHHHHHHccCCC-CCcEEEEecccHHHHHHHHHHHHHHhCCCCCCee
Q psy1907 671 IYPFKQDLIDAVRDH--QVLIIEGETGSGKTTQIPQYLHEAGFTK-DKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEV 747 (1320)
Q Consensus 671 i~~~~~~il~~i~~~--~v~ii~geTGsGKTTqvPq~l~e~~~~~-~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~V 747 (1320)
-+++..+.+..+.++ +.++|+++||||||++....+++..... .+.++++..|+|..|..+++++.+ ++...+..+
T Consensus 28 ~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~~~ 106 (395)
T 3pey_A 28 PSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQE-MGKFTKITS 106 (395)
T ss_dssp CCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHH-HTTTSCCCE
T ss_pred CCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHH-HhcccCeeE
Confidence 455667778888777 8999999999999999888877654332 345799999999999999987755 444445455
Q ss_pred eEEe--ecCccCCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 748 GYAI--RFEDCTSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 748 GY~i--rfe~~~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
+... .++.....+..|+++|.|.|++.+.... .+.++++|||||||.
T Consensus 107 ~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~ 156 (395)
T 3pey_A 107 QLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADN 156 (395)
T ss_dssp EEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHH
T ss_pred EEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhh
Confidence 5443 3333444578899999999999887765 688999999999994
No 87
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.40 E-value=1.6e-12 Score=170.44 Aligned_cols=223 Identities=11% Similarity=0.068 Sum_probs=147.2
Q ss_pred CCHHHHHHHHcCC---CCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH-------HHHHhhcC
Q psy1907 1 MTDGTLHREFLSE---PDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA-------QKFSEFFD 70 (1320)
Q Consensus 1 ~T~G~LLr~l~~d---~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~-------~~f~~~f~ 70 (1320)
.|++.|.+.+... +.++.+.+||+|||| |+...+ ..+.+....++.++++||||+.. .....+|+
T Consensus 381 tTiqkl~~~l~~~~~~~~~~~~~lvIiDEAH-rs~~~~----~~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG 455 (1038)
T 2w00_A 381 TTIQKLNNLMKAESDLPVYNQQVVFIFDECH-RSQFGE----AQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFG 455 (1038)
T ss_dssp EEHHHHHHHHHHCCCCGGGGSCEEEEEESCC-TTHHHH----HHHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHC
T ss_pred EEHHHHHHHHhcccchhccccccEEEEEccc-hhcchH----HHHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhC
Confidence 3889988876533 246788999999999 555433 23444444466789999999932 24566776
Q ss_pred CCCEEEe-------CCcccceeEEEEcC-Cc------------------------cchHHHHHHHHHHHH-hh-------
Q psy1907 71 DAPVFRI-------PGRRFPVDIYYTKA-PE------------------------ADYIDACVVSILQIH-AT------- 110 (1320)
Q Consensus 71 ~~~vi~i-------~g~~~pV~~~y~~~-~~------------------------~~~l~~~i~~v~~i~-~~------- 110 (1320)
+ ++... .|...|+.+.|... +. .+.+...+..++.-. ..
T Consensus 456 ~-~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~ 534 (1038)
T 2w00_A 456 R-ELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPG 534 (1038)
T ss_dssp S-EEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSS
T ss_pred C-eeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 4 23332 24455666655431 10 011222222232211 11
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHHhhc---CCCCCeEE-EEecCC----------C----------CHH-------
Q psy1907 111 QPLGDILVFLTGQEEIETCNEILQDRVRRLG---SKIKELII-LPVYSN----------L----------PTD------- 159 (1320)
Q Consensus 111 ~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~---~~~~~~~v-~~LH~~----------l----------~~~------- 159 (1320)
..++++|||+++++.+..++..|.+..+... +...++.+ ..+||+ + ++.
T Consensus 535 ~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~ 614 (1038)
T 2w00_A 535 SKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDA 614 (1038)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHH
T ss_pred CCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHH
Confidence 1245799999999999999999987653321 11223444 445542 2 221
Q ss_pred ----------------------HHHHHcCCCCCCCeEEEEeCcccccCCCCCCccEEEcCCCCccccccCCCCcccccee
Q psy1907 160 ----------------------MQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVV 217 (1320)
Q Consensus 160 ----------------------~r~~i~~~~~~g~~kVlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~ 217 (1320)
+|..+.+.|+.|..+|||+||++.+|+|+|.+ .|+..+.
T Consensus 615 ~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDk------------------ 675 (1038)
T 2w00_A 615 AIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDK------------------ 675 (1038)
T ss_dssp HHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEES------------------
T ss_pred HHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEcc------------------
Confidence 47778888999999999999999999999999 5665443
Q ss_pred ccCHhhHHHHhhhcCCCCCC-CCceEEEEecC
Q psy1907 218 PISKASANQRAGVITGFNPL-SDFRGCAHVLG 248 (1320)
Q Consensus 218 piSk~s~~QR~GRAGR~g~g-~~fg~~~~L~~ 248 (1320)
|.+...++||.||+||.+++ |.+|..+.+.+
T Consensus 676 pl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 676 NLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp CCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred CCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 56778899999999999986 89998887776
No 88
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.39 E-value=2.9e-12 Score=151.42 Aligned_cols=122 Identities=22% Similarity=0.212 Sum_probs=92.4
Q ss_pred ChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCC-CCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeE
Q psy1907 671 IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTK-DKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGY 749 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~-~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY 749 (1320)
-+++..+.+..+.+++.++|+++||||||+.....+++..... .+.++++..|+|..|..+++++.. ++...|..|+.
T Consensus 44 ~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~~~~~ 122 (400)
T 1s2m_A 44 PSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRT-LGKHCGISCMV 122 (400)
T ss_dssp CCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH-HTTTTTCCEEE
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHH-HhcccCceEEE
Confidence 4566777888888888899999999999997766666543322 344688999999999999887765 44455666665
Q ss_pred EeecCc------cCCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEcccc
Q psy1907 750 AIRFED------CTSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAH 793 (1320)
Q Consensus 750 ~irfe~------~~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~H 793 (1320)
...... ....+..|+++|.|.|++.+.... .+.++++|||||||
T Consensus 123 ~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 173 (400)
T 1s2m_A 123 TTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD 173 (400)
T ss_dssp ECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH
T ss_pred EeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch
Confidence 443332 123567899999999999887654 68999999999999
No 89
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.38 E-value=1.2e-12 Score=159.34 Aligned_cols=123 Identities=18% Similarity=0.160 Sum_probs=95.6
Q ss_pred hhhHHHHHHHHHhC--CEEEEEcCCCCchhcHHHHHHHHccCCCC-CcEEEEecccHHHHHHHHHHHHHHhCCCCCCeee
Q psy1907 672 YPFKQDLIDAVRDH--QVLIIEGETGSGKTTQIPQYLHEAGFTKD-KMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVG 748 (1320)
Q Consensus 672 ~~~~~~il~~i~~~--~v~ii~geTGsGKTTqvPq~l~e~~~~~~-~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VG 748 (1320)
+++..+.+..+.++ +.++++|+||||||......+++.-.... +.+++|..|+|..|..++.++.+......+-.++
T Consensus 116 ~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~ 195 (479)
T 3fmp_B 116 SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLA 195 (479)
T ss_dssp CHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEE
T ss_pred CHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEE
Confidence 44566677777765 99999999999999987777766543322 3369999999999999998887766555566788
Q ss_pred EEeecCccC---CCCccEEEEccHHHHHHHhcCC--CCCCccEEEEccccc
Q psy1907 749 YAIRFEDCT---SERTIIKYMTDGTLHREFLSEP--DLASYSVMIIDEAHP 794 (1320)
Q Consensus 749 Y~irfe~~~---s~~T~i~y~TdG~Llrel~~dp--~L~~ys~iIiDE~HE 794 (1320)
+.++..... .....|+++|.|.|++.+.+.+ .+.++++|||||||.
T Consensus 196 ~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~ 246 (479)
T 3fmp_B 196 YAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (479)
T ss_dssp EESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHH
T ss_pred EEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHH
Confidence 877755433 3356899999999999997755 458999999999993
No 90
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.33 E-value=1.8e-12 Score=158.40 Aligned_cols=113 Identities=12% Similarity=0.094 Sum_probs=91.2
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCC-CeE-EEEeCcccccCCCCC
Q psy1907 112 PLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPN-ARK-VVLATNIAETSLTID 189 (1320)
Q Consensus 112 ~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g-~~k-VlvATdIAe~gldIp 189 (1320)
++.++|||+.....++.+...|.... +..+..+||++++.+|.++++.|++| ..+ +|+||++++.|||++
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~--------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~ 411 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 411 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHH--------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCT
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhh--------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchh
Confidence 45789999999999999999987642 45678899999999999999999877 444 899999999999999
Q ss_pred CccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHH
Q psy1907 190 NIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEV 251 (1320)
Q Consensus 190 ~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~ 251 (1320)
++++||.++. |-+.+.+.||.||++|.|..+. ..+|++.++..
T Consensus 412 ~~~~vi~~d~------------------~~~~~~~~Q~~gR~~R~Gq~~~-v~v~~lv~~~t 454 (500)
T 1z63_A 412 SANRVIHFDR------------------WWNPAVEDQATDRVYRIGQTRN-VIVHKLISVGT 454 (500)
T ss_dssp TCSEEEESSC------------------CSCC---CHHHHTTTTTTTTSC-EEEEEEEETTS
T ss_pred hCCEEEEeCC------------------CCCcchHHHHHHHHHHcCCCCe-eEEEEEEeCCC
Confidence 9999999876 4456788999999999998653 25677877543
No 91
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.32 E-value=4e-12 Score=161.64 Aligned_cols=123 Identities=18% Similarity=0.069 Sum_probs=90.8
Q ss_pred ChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccC---CCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCee
Q psy1907 671 IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGF---TKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEV 747 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~---~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~V 747 (1320)
-.++..+++.++.+++.+||+++||||||++....+++... ...++++++..|+|..+...+..+..- ....|-.|
T Consensus 14 lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~-~~~~~~~v 92 (696)
T 2ykg_A 14 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKY-FERHGYRV 92 (696)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHH-TTTTTCCE
T ss_pred ccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHH-hccCCceE
Confidence 35677889999989999999999999999988777654321 112246999999988888776655443 33345555
Q ss_pred eEEeecCccCC------CCccEEEEccHHHHHHHhcCC--CCCCccEEEEccccc
Q psy1907 748 GYAIRFEDCTS------ERTIIKYMTDGTLHREFLSEP--DLASYSVMIIDEAHP 794 (1320)
Q Consensus 748 GY~irfe~~~s------~~T~i~y~TdG~Llrel~~dp--~L~~ys~iIiDE~HE 794 (1320)
+.-....+... .++.|+|+|.|+|++.+..+. .+.++++|||||||+
T Consensus 93 ~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~ 147 (696)
T 2ykg_A 93 TGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHN 147 (696)
T ss_dssp EEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGG
T ss_pred EEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCc
Confidence 54433322211 357899999999999998874 588999999999998
No 92
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.31 E-value=1.1e-11 Score=147.06 Aligned_cols=123 Identities=14% Similarity=0.146 Sum_probs=94.0
Q ss_pred ChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCC-CCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeE
Q psy1907 671 IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFT-KDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGY 749 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~-~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY 749 (1320)
-+++..+.+..+.+++.++++++||||||......+++.-.. ..+.++++..|+|..|..+++++.. ++...|-.|+.
T Consensus 60 ~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~ 138 (410)
T 2j0s_A 60 PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLA-LGDYMNVQCHA 138 (410)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHH-HTTTTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHH-HhccCCeEEEE
Confidence 356677888888888899999999999999887777765332 2345799999999999999888765 45556666666
Q ss_pred EeecCccC------CCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 750 AIRFEDCT------SERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 750 ~irfe~~~------s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
.+...+.. .....|+++|.|.|+..+.... .+.++++|||||||.
T Consensus 139 ~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~ 190 (410)
T 2j0s_A 139 CIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE 190 (410)
T ss_dssp ECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred EECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHH
Confidence 55433211 1246799999999999887654 678899999999994
No 93
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.31 E-value=2.6e-12 Score=157.78 Aligned_cols=122 Identities=18% Similarity=0.187 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHhC--CEEEEEcCCCCchhcHHHHHHHHccCCC-CCcEEEEecccHHHHHHHHHHHHHHhC-CCCCCeee
Q psy1907 673 PFKQDLIDAVRDH--QVLIIEGETGSGKTTQIPQYLHEAGFTK-DKMKIGCTQPRRVAAMSVSARVAEEMG-VKLGCEVG 748 (1320)
Q Consensus 673 ~~~~~il~~i~~~--~v~ii~geTGsGKTTqvPq~l~e~~~~~-~~~~I~~tQPRRvAA~svA~rva~e~~-~~lG~~VG 748 (1320)
++..+.+.++.++ +.++|+|+||||||......+++.-... .+.+++++.|+|..|..++.++.+-.+ ..++..++
T Consensus 144 ~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~ 223 (508)
T 3fho_A 144 KIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFG 223 (508)
T ss_dssp CTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC-
T ss_pred HHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEE
Confidence 3445556677666 8999999999999998777766653332 244799999999999999998877543 23444555
Q ss_pred EEeecCccCCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 749 YAIRFEDCTSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 749 Y~irfe~~~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
++-........+..|+++|.|.|++.+.... .+.++++|||||+|.
T Consensus 224 ~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~ 270 (508)
T 3fho_A 224 IKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADN 270 (508)
T ss_dssp ---------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHH
T ss_pred eCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhh
Confidence 5555544555578999999999999887766 588999999999994
No 94
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.30 E-value=1e-11 Score=142.57 Aligned_cols=118 Identities=23% Similarity=0.250 Sum_probs=90.8
Q ss_pred ChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEE
Q psy1907 671 IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYA 750 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~ 750 (1320)
-+++..+.+.++.+++.++|+++||||||......+++. +.++++..|+|..|..+++++.+- +...|..|+.-
T Consensus 17 l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~~-~~~~~~~~~~~ 90 (337)
T 2z0m_A 17 FTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----GMKSLVVTPTRELTRQVASHIRDI-GRYMDTKVAEV 90 (337)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----TCCEEEECSSHHHHHHHHHHHHHH-TTTSCCCEEEE
T ss_pred CCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----cCCEEEEeCCHHHHHHHHHHHHHH-hhhcCCcEEEE
Confidence 467778889999999999999999999999887777764 235889999999999999888753 34445555543
Q ss_pred eecCcc-----CCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 751 IRFEDC-----TSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 751 irfe~~-----~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
...... ...+..|+++|.|.|++.+.... .+.++++||+||||.
T Consensus 91 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~ 140 (337)
T 2z0m_A 91 YGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADL 140 (337)
T ss_dssp CTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHH
T ss_pred ECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHH
Confidence 332211 01247899999999999887654 578999999999993
No 95
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.29 E-value=1.2e-12 Score=165.37 Aligned_cols=112 Identities=7% Similarity=0.039 Sum_probs=95.7
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCe---EEEEeCcccccCCC
Q psy1907 111 QPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNAR---KVVLATNIAETSLT 187 (1320)
Q Consensus 111 ~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~---kVlvATdIAe~gld 187 (1320)
.+..++|||+.....++.+...|... ++.+..+||++++.+|.++++.|.+|.. .+|+||++++.|||
T Consensus 414 ~~~~k~lIFs~~~~~~~~l~~~l~~~---------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Gln 484 (644)
T 1z3i_X 414 TTSDKVVLVSNYTQTLDLFEKLCRNR---------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLN 484 (644)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHH---------TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCC
T ss_pred cCCCEEEEEEccHHHHHHHHHHHHHC---------CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcc
Confidence 34578999999999999999988763 6788999999999999999999977653 58999999999999
Q ss_pred CCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHH
Q psy1907 188 IDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEE 250 (1320)
Q Consensus 188 Ip~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~ 250 (1320)
++++++||.++. |-+.+.+.||.||++|.|..+. ..+|++.+..
T Consensus 485 l~~a~~Vi~~d~------------------~wnp~~~~Qa~gR~~R~Gq~~~-v~v~~lv~~~ 528 (644)
T 1z3i_X 485 LIGANRLVMFDP------------------DWNPANDEQAMARVWRDGQKKT-CYIYRLLSTG 528 (644)
T ss_dssp CTTEEEEEECSC------------------CSSHHHHHHHHTTSSSTTCCSC-EEEEEEEETT
T ss_pred cccCCEEEEECC------------------CCCccHHHHHHHhhhhcCCCCc-eEEEEEEECC
Confidence 999999999876 5678999999999999987643 3577776654
No 96
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.29 E-value=2e-11 Score=144.94 Aligned_cols=123 Identities=19% Similarity=0.183 Sum_probs=88.2
Q ss_pred ChhhHHHHHHHHHhCCEEEEEcCCCCchhcH--HHHH--HHHccC---------------CCCCcEEEEecccHHHHHHH
Q psy1907 671 IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQ--IPQY--LHEAGF---------------TKDKMKIGCTQPRRVAAMSV 731 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~v~ii~geTGsGKTTq--vPq~--l~e~~~---------------~~~~~~I~~tQPRRvAA~sv 731 (1320)
-+++..+.+.++.+++.++|+++||||||+. +|.+ ++..+. ...+.++++..|+|..|..+
T Consensus 38 ~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 117 (417)
T 2i4i_A 38 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQI 117 (417)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHH
Confidence 3556677888899999999999999999984 4432 222211 11124699999999999999
Q ss_pred HHHHHHHhCCCCCCeeeEEeecCcc------CCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 732 SARVAEEMGVKLGCEVGYAIRFEDC------TSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 732 A~rva~e~~~~lG~~VGY~irfe~~------~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
++++..- +...|-.|+.-....+. ....+.|+++|.|.|++.+..++ .+..+++|||||||.
T Consensus 118 ~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~ 186 (417)
T 2i4i_A 118 YEEARKF-SYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADR 186 (417)
T ss_dssp HHHHHHH-HTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHH
T ss_pred HHHHHHH-hCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhH
Confidence 9887654 33344445443322211 13457899999999999988776 589999999999994
No 97
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.26 E-value=2.7e-11 Score=142.24 Aligned_cols=124 Identities=13% Similarity=0.029 Sum_probs=91.9
Q ss_pred ChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCC-CCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeE
Q psy1907 671 IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFT-KDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGY 749 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~-~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY 749 (1320)
-+++..+.+.++.+++.++|+++||||||......+++.-.. .++.++++..|+|..|..++.++..-.....|-.|+.
T Consensus 31 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 110 (391)
T 1xti_A 31 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAV 110 (391)
T ss_dssp CCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEE
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 567778888888888999999999999999865555543222 2344799999999999999888876544333555655
Q ss_pred EeecCccC-------CCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 750 AIRFEDCT-------SERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 750 ~irfe~~~-------s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
-....+.. .....|+++|.|.|++.+..+. .+.++++|||||||.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~ 163 (391)
T 1xti_A 111 FFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK 163 (391)
T ss_dssp ECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHH
T ss_pred EeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHH
Confidence 43322211 1236899999999999887765 589999999999993
No 98
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.23 E-value=1.1e-11 Score=145.78 Aligned_cols=123 Identities=16% Similarity=0.130 Sum_probs=88.4
Q ss_pred ChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCC-CCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeE
Q psy1907 671 IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFT-KDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGY 749 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~-~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY 749 (1320)
-+++..+.+..+.+++.++|+++||||||......+++.-.. ..+.++++..|+|..|..+++++..- ....|..|+.
T Consensus 44 ~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~-~~~~~~~~~~ 122 (394)
T 1fuu_A 44 PSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL-AFHMDIKVHA 122 (394)
T ss_dssp CCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH-TTTSCCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHH-hccCCeeEEE
Confidence 355667778888888889999999999998765555543222 23447999999999999888877653 3344545544
Q ss_pred EeecCccC-----CCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 750 AIRFEDCT-----SERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 750 ~irfe~~~-----s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
.+...+.. -.++.|+++|.|.|++.+.... .+.++++||+||||.
T Consensus 123 ~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~ 173 (394)
T 1fuu_A 123 CIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 173 (394)
T ss_dssp ECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred EeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHH
Confidence 33322110 1146799999999999987665 578899999999994
No 99
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.16 E-value=1.3e-10 Score=145.21 Aligned_cols=110 Identities=14% Similarity=0.172 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHhCCEEEEEcCCCCchhc--HHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEE
Q psy1907 673 PFKQDLIDAVRDHQVLIIEGETGSGKTT--QIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYA 750 (1320)
Q Consensus 673 ~~~~~il~~i~~~~v~ii~geTGsGKTT--qvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~ 750 (1320)
++..+++.++.+++.+++++|||||||. |+|.++. ++.+++.-|.+..+...+.++.. +|. .+++-
T Consensus 47 p~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-------~g~~lVisP~~~L~~q~~~~l~~-~gi----~~~~l 114 (591)
T 2v1x_A 47 PLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-------DGFTLVICPLISLMEDQLMVLKQ-LGI----SATML 114 (591)
T ss_dssp TTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-------SSEEEEECSCHHHHHHHHHHHHH-HTC----CEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-------CCcEEEEeCHHHHHHHHHHHHHh-cCC----cEEEE
Confidence 5577889999999999999999999999 8887642 23688999999988888887765 343 34332
Q ss_pred eecCcc------------CCCCccEEEEccHHHH------HHHhcCCCCCCccEEEEccccc
Q psy1907 751 IRFEDC------------TSERTIIKYMTDGTLH------REFLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 751 irfe~~------------~s~~T~i~y~TdG~Ll------rel~~dp~L~~ys~iIiDE~HE 794 (1320)
....+. ......|+|+|.+.|. +.+.....+..+++|||||||.
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~ 176 (591)
T 2v1x_A 115 NASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHC 176 (591)
T ss_dssp CSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGG
T ss_pred eCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECccc
Confidence 211110 3457899999999874 3333334578999999999996
No 100
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.09 E-value=1.1e-10 Score=131.97 Aligned_cols=129 Identities=12% Similarity=0.069 Sum_probs=90.7
Q ss_pred cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCC-C
Q psy1907 94 ADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPN-A 172 (1320)
Q Consensus 94 ~~~l~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g-~ 172 (1320)
..++..+...+..+.. ++.++|||+.....++.+...|.+.. ++.+..+||++++.+|.++++.|.+| .
T Consensus 95 s~K~~~L~~ll~~~~~--~~~kvlIFs~~~~~~~~l~~~L~~~~--------g~~~~~l~G~~~~~~R~~~i~~F~~~~~ 164 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALD--EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPS 164 (271)
T ss_dssp CHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHHH--------CSCCCEECTTSCHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHh--CCCeEEEEeccHHHHHHHHHHHHHhc--------CCcEEEEECCCCHHHHHHHHHHhcCCCC
Confidence 4455555555544432 35789999999999999999997642 56688899999999999999999877 5
Q ss_pred eE-EEEeCcccccCCCCCCccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHH
Q psy1907 173 RK-VVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEV 251 (1320)
Q Consensus 173 ~k-VlvATdIAe~gldIp~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~ 251 (1320)
.+ +|+||+++++|||++++++||++++ |-+.+.+.||.||++|.|..+. -.+|++++...
T Consensus 165 ~~v~L~st~~~g~Glnl~~a~~VI~~d~------------------~wnp~~~~Q~~gR~~R~Gq~~~-v~v~~li~~~T 225 (271)
T 1z5z_A 165 VKFIVLSVKAGGFGINLTSANRVIHFDR------------------WWNPAVEDQATDRVYRIGQTRN-VIVHKLISVGT 225 (271)
T ss_dssp CCEEEEECCTTCCCCCCTTCSEEEECSC------------------CSCTTTC--------------C-CEEEEEEETTS
T ss_pred CCEEEEehhhhcCCcCcccCCEEEEECC------------------CCChhHHHHHHHhccccCCCCc-eEEEEEeeCCC
Confidence 55 7999999999999999999999887 4456778999999999887533 25688877653
No 101
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.08 E-value=1.5e-10 Score=143.42 Aligned_cols=124 Identities=23% Similarity=0.230 Sum_probs=86.3
Q ss_pred ChhhHHHHHHHHH--hCCEEEEEcCCCCchhcH----HHHHHHHccCCC-CCcEEEEecccHHHHHHHHHHHHHHhCCCC
Q psy1907 671 IYPFKQDLIDAVR--DHQVLIIEGETGSGKTTQ----IPQYLHEAGFTK-DKMKIGCTQPRRVAAMSVSARVAEEMGVKL 743 (1320)
Q Consensus 671 i~~~~~~il~~i~--~~~v~ii~geTGsGKTTq----vPq~l~e~~~~~-~~~~I~~tQPRRvAA~svA~rva~e~~~~l 743 (1320)
.+++..+.+..+. +++.++++++||||||.. +.+.+.+..... .+.++++..|.|..|..++.++..-.+...
T Consensus 95 ~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~ 174 (563)
T 3i5x_A 95 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNY 174 (563)
T ss_dssp CCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhcc
Confidence 4566777888777 678999999999999986 445555544332 234689999999999999999887543222
Q ss_pred CC---eeeEEeecCcc-------CCCCccEEEEccHHHHHHHhcC--CCCCCccEEEEccccc
Q psy1907 744 GC---EVGYAIRFEDC-------TSERTIIKYMTDGTLHREFLSE--PDLASYSVMIIDEAHP 794 (1320)
Q Consensus 744 G~---~VGY~irfe~~-------~s~~T~i~y~TdG~Llrel~~d--p~L~~ys~iIiDE~HE 794 (1320)
|. .+...+...+. ......|+++|.|.|+..+... ..+..+++|||||||.
T Consensus 175 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 175 GLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp GGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred ccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 11 12111111110 1225689999999999887653 3688899999999994
No 102
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.06 E-value=6.8e-10 Score=133.56 Aligned_cols=122 Identities=19% Similarity=0.243 Sum_probs=86.8
Q ss_pred hhhHHHHHHHHHhCCEEEEEcCCCCchhcH--HHHH--HHHccC--CCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCC
Q psy1907 672 YPFKQDLIDAVRDHQVLIIEGETGSGKTTQ--IPQY--LHEAGF--TKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGC 745 (1320)
Q Consensus 672 ~~~~~~il~~i~~~~v~ii~geTGsGKTTq--vPq~--l~e~~~--~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~ 745 (1320)
+++..+.+..+.+++.++++++||||||.. +|-+ +++.+. ...+.++++..|+|-.|..+++.+.. ++...|-
T Consensus 80 t~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~-~~~~~~~ 158 (434)
T 2db3_A 80 TPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARK-FAFESYL 158 (434)
T ss_dssp CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHH-HTTTSSC
T ss_pred CHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHH-HhccCCc
Confidence 455667778888999999999999999985 3432 333322 12244699999999999998877654 3333344
Q ss_pred eeeEEeecCc------cCCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 746 EVGYAIRFED------CTSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 746 ~VGY~irfe~------~~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
.|+.-+...+ .......|+++|.|.|+..+.... .+.++++|||||||.
T Consensus 159 ~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~ 214 (434)
T 2db3_A 159 KIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADR 214 (434)
T ss_dssp CCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHH
T ss_pred EEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhh
Confidence 4443332221 123467899999999999887654 689999999999994
No 103
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.06 E-value=3.8e-10 Score=125.63 Aligned_cols=123 Identities=20% Similarity=0.242 Sum_probs=92.3
Q ss_pred CChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCC-CCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeee
Q psy1907 670 PIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTK-DKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVG 748 (1320)
Q Consensus 670 Pi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~-~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VG 748 (1320)
..+++..+.+.++.+++.++++++||||||+.....+++.-... .+.+++|+.|+|..|..+++++.. ++...|-.|+
T Consensus 65 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~-~~~~~~~~~~ 143 (249)
T 3ber_A 65 KPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEA-LGSSIGVQSA 143 (249)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHH-HHGGGTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHH-HhccCCeeEE
Confidence 45778888999999999999999999999998766665432222 234699999999999999987754 3333344555
Q ss_pred EEeecCcc------CCCCccEEEEccHHHHHHHhcCC--CCCCccEEEEcccc
Q psy1907 749 YAIRFEDC------TSERTIIKYMTDGTLHREFLSEP--DLASYSVMIIDEAH 793 (1320)
Q Consensus 749 Y~irfe~~------~s~~T~i~y~TdG~Llrel~~dp--~L~~ys~iIiDE~H 793 (1320)
.-+...+. ...++.|+++|.|.|++.+...+ .+.++++|||||||
T Consensus 144 ~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah 196 (249)
T 3ber_A 144 VIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD 196 (249)
T ss_dssp EECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH
T ss_pred EEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh
Confidence 44333221 13467899999999999987654 68899999999999
No 104
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.05 E-value=1e-10 Score=128.98 Aligned_cols=75 Identities=32% Similarity=0.622 Sum_probs=69.2
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCHHHHHhhcCCCCEEEe
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQKFSEFFDDAPVFRI 77 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~~~f~~~f~~~~vi~i 77 (1320)
+|||+|++.+.. .++++++|||||||+|++++|+++..++.+....++.|+|+||||++.+.|++||+++|++.|
T Consensus 161 ~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~~pvi~v 235 (235)
T 3llm_A 161 CTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIEV 235 (235)
T ss_dssp EEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTSCCCEEC
T ss_pred ECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCCCCEEeC
Confidence 599999999876 499999999999999999999999999999888889999999999998889999999998864
No 105
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.02 E-value=4.8e-10 Score=138.12 Aligned_cols=111 Identities=19% Similarity=0.224 Sum_probs=79.1
Q ss_pred hhhHHHHHHHHHhCCEEEEEcCCCCchhc--HHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeE
Q psy1907 672 YPFKQDLIDAVRDHQVLIIEGETGSGKTT--QIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGY 749 (1320)
Q Consensus 672 ~~~~~~il~~i~~~~v~ii~geTGsGKTT--qvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY 749 (1320)
.++..+++.++.+++.++|+++||||||. |+|.++. . +.+++.-|.+..+.....++.. + |..+++
T Consensus 27 r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~-g~~lvi~P~~aL~~q~~~~l~~-~----gi~~~~ 94 (523)
T 1oyw_A 27 RPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------N-GLTVVVSPLISLMKDQVDQLQA-N----GVAAAC 94 (523)
T ss_dssp CTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------S-SEEEEECSCHHHHHHHHHHHHH-T----TCCEEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------C-CCEEEECChHHHHHHHHHHHHH-c----CCcEEE
Confidence 45678899999999999999999999999 8897753 1 2578888999888888777754 3 444444
Q ss_pred EeecCc----------cCCCCccEEEEccHHHHHHHhc-CCCCCCccEEEEccccc
Q psy1907 750 AIRFED----------CTSERTIIKYMTDGTLHREFLS-EPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 750 ~irfe~----------~~s~~T~i~y~TdG~Llrel~~-dp~L~~ys~iIiDE~HE 794 (1320)
-....+ ..+....|+|+|.+.|+..... .-...++++|||||||.
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~ 150 (523)
T 1oyw_A 95 LNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHC 150 (523)
T ss_dssp ECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGG
T ss_pred EeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccc
Confidence 222111 1134578999999998633211 11347899999999995
No 106
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.99 E-value=1.5e-09 Score=117.97 Aligned_cols=123 Identities=16% Similarity=0.142 Sum_probs=87.7
Q ss_pred ChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCC-CCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeE
Q psy1907 671 IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFT-KDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGY 749 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~-~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY 749 (1320)
-+++..+.+.++.+++.++|+++||||||......+++.-.. ..+.++++..|+|..|..+++++.. ++...|..|+.
T Consensus 37 ~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~ 115 (224)
T 1qde_A 37 PSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMA-LAFHMDIKVHA 115 (224)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHH-HTTTSCCCEEE
T ss_pred CcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHH-HhcccCceEEE
Confidence 466777888889899999999999999998754444443222 2344799999999999998887764 33333444443
Q ss_pred EeecCcc-----CCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 750 AIRFEDC-----TSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 750 ~irfe~~-----~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
.+...+. .-.+..|+++|.|.|++.+.... .+.++++|||||||.
T Consensus 116 ~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~ 166 (224)
T 1qde_A 116 CIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 166 (224)
T ss_dssp ECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred EeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhH
Confidence 3322211 11347899999999999887654 688999999999993
No 107
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.98 E-value=8.7e-10 Score=137.45 Aligned_cols=124 Identities=23% Similarity=0.249 Sum_probs=84.2
Q ss_pred ChhhHHHHHHHHH--hCCEEEEEcCCCCchhcH--HHH--HHHHccCCC-CCcEEEEecccHHHHHHHHHHHHHHhCCCC
Q psy1907 671 IYPFKQDLIDAVR--DHQVLIIEGETGSGKTTQ--IPQ--YLHEAGFTK-DKMKIGCTQPRRVAAMSVSARVAEEMGVKL 743 (1320)
Q Consensus 671 i~~~~~~il~~i~--~~~v~ii~geTGsGKTTq--vPq--~l~e~~~~~-~~~~I~~tQPRRvAA~svA~rva~e~~~~l 743 (1320)
..++..+.+..+. +++.+|++++||||||.. +|- .+.+..... .+.++++..|+|..|..++.++..-.+...
T Consensus 44 ~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~ 123 (579)
T 3sqw_A 44 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNY 123 (579)
T ss_dssp CCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcc
Confidence 3466777888777 678999999999999984 453 344433222 234689999999999999999887542211
Q ss_pred CC---eeeEEeecCcc-------CCCCccEEEEccHHHHHHHhcC--CCCCCccEEEEccccc
Q psy1907 744 GC---EVGYAIRFEDC-------TSERTIIKYMTDGTLHREFLSE--PDLASYSVMIIDEAHP 794 (1320)
Q Consensus 744 G~---~VGY~irfe~~-------~s~~T~i~y~TdG~Llrel~~d--p~L~~ys~iIiDE~HE 794 (1320)
|. .+...+...+. ......|+++|.|.|+..+... ..+..+++|||||||+
T Consensus 124 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 124 GLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp GGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred cccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH
Confidence 11 11111111110 0225689999999999877653 3688999999999994
No 108
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.96 E-value=4.1e-09 Score=116.37 Aligned_cols=123 Identities=22% Similarity=0.276 Sum_probs=89.7
Q ss_pred ChhhHHHHHHHHHhCCEEEEEcCCCCchhcH--HHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeee
Q psy1907 671 IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQ--IPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVG 748 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~v~ii~geTGsGKTTq--vPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VG 748 (1320)
-+++..+.+.++.+++.++++++||||||.. +|-+-.-......+.++++.-|.|..|..+++++.+ ++...|..++
T Consensus 52 ~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~ 130 (245)
T 3dkp_A 52 PTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIK-ISEGTGFRIH 130 (245)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHH-HTTTSCCCEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHH-HhcccCceEE
Confidence 4566778888888888999999999999985 453322111122344689999999999999887754 3444454443
Q ss_pred EEe-------ecCccCCCCccEEEEccHHHHHHHhcCC---CCCCccEEEEccccc
Q psy1907 749 YAI-------RFEDCTSERTIIKYMTDGTLHREFLSEP---DLASYSVMIIDEAHP 794 (1320)
Q Consensus 749 Y~i-------rfe~~~s~~T~i~y~TdG~Llrel~~dp---~L~~ys~iIiDE~HE 794 (1320)
... ++......+..|+++|.|.|+..+..++ .+.++++|||||||.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~ 186 (245)
T 3dkp_A 131 MIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDK 186 (245)
T ss_dssp CCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHH
T ss_pred EEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHH
Confidence 322 2334445677899999999999998764 688999999999995
No 109
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.95 E-value=2e-09 Score=118.19 Aligned_cols=123 Identities=19% Similarity=0.195 Sum_probs=90.5
Q ss_pred CChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHH----HHccCC-CCCcEEEEecccHHHHHHHHHHHHHHhCCCCC
Q psy1907 670 PIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYL----HEAGFT-KDKMKIGCTQPRRVAAMSVSARVAEEMGVKLG 744 (1320)
Q Consensus 670 Pi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l----~e~~~~-~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG 744 (1320)
..+++..+.+.++.+++.++++++||||||+.....+ ++.... ..+.+++++.|+|..|..+++++.. ++...|
T Consensus 47 ~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~ 125 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRK-VGKNHD 125 (236)
T ss_dssp BCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHH-HTTTSS
T ss_pred CCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHH-HhCCCC
Confidence 4567788889999999999999999999999644333 332222 2345689999999999999877754 555555
Q ss_pred CeeeEEeecCccC-----CCCccEEEEccHHHHHHHhcC--CCCCCccEEEEcccc
Q psy1907 745 CEVGYAIRFEDCT-----SERTIIKYMTDGTLHREFLSE--PDLASYSVMIIDEAH 793 (1320)
Q Consensus 745 ~~VGY~irfe~~~-----s~~T~i~y~TdG~Llrel~~d--p~L~~ys~iIiDE~H 793 (1320)
-.|+.-....+.. -.+..|+++|.|.|++.+... ..+.++++|||||||
T Consensus 126 ~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 181 (236)
T 2pl3_A 126 FSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD 181 (236)
T ss_dssp CCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHH
T ss_pred eeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChH
Confidence 5666544432211 135789999999999988765 467899999999999
No 110
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.94 E-value=4.9e-09 Score=112.21 Aligned_cols=124 Identities=17% Similarity=0.152 Sum_probs=90.3
Q ss_pred ChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccC-CCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeE
Q psy1907 671 IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGF-TKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGY 749 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~-~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY 749 (1320)
-+++..+.+.++.+++.++++++||||||...-..+++... ...+.++++..|+|..|..+++++..-.....|..|+.
T Consensus 26 ~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 105 (206)
T 1vec_A 26 PSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMA 105 (206)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEE
T ss_pred CCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEE
Confidence 35667788888999999999999999999755444444322 22344688999999999998888765443222455554
Q ss_pred EeecCcc------CCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 750 AIRFEDC------TSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 750 ~irfe~~------~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
.....+. ......|+++|.|.|++.+.... .+.++++||+||||.
T Consensus 106 ~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 106 TTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp ECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred EeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 4433221 23467899999999999887655 688999999999995
No 111
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.94 E-value=2.9e-09 Score=136.29 Aligned_cols=121 Identities=20% Similarity=0.287 Sum_probs=85.9
Q ss_pred ccCCC--hhhHHHHHHHHHhC------CEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHH
Q psy1907 667 KSLPI--YPFKQDLIDAVRDH------QVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEE 738 (1320)
Q Consensus 667 ~~LPi--~~~~~~il~~i~~~------~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e 738 (1320)
++||. .+...+.+..|.++ ..++|+|+||||||......+++.- ..|.++++..|.|..|...++++.+-
T Consensus 363 ~~lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l--~~g~qvlvlaPtr~La~Q~~~~l~~~ 440 (780)
T 1gm5_A 363 KSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNY--EAGFQTAFMVPTSILAIQHYRRTVES 440 (780)
T ss_dssp HHSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHH--HHTSCEEEECSCHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 34443 44455555555432 4789999999999998877666531 12346899999999999999998876
Q ss_pred hCCCCCCeeeEEeecCcc----------CCCCccEEEEccHHHHHHHhcCCCCCCccEEEEccccc
Q psy1907 739 MGVKLGCEVGYAIRFEDC----------TSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 739 ~~~~lG~~VGY~irfe~~----------~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HE 794 (1320)
.+ ..|-.|+.-....+. .+.+..|+++|.|+|.. +..+.++++|||||+|.
T Consensus 441 ~~-~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 441 FS-KFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE----DVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp HT-CSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH----CCCCSCCCEEEEESCCC
T ss_pred hh-hcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh----hhhccCCceEEecccch
Confidence 53 456666654443321 13357899999997743 56789999999999996
No 112
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.94 E-value=2.7e-09 Score=137.96 Aligned_cols=112 Identities=7% Similarity=0.003 Sum_probs=95.8
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCC---CeEEEEeCcccccCCCCC
Q psy1907 113 LGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPN---ARKVVLATNIAETSLTID 189 (1320)
Q Consensus 113 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g---~~kVlvATdIAe~gldIp 189 (1320)
+.++|||+.....++.+...|... ++.+..+||+++..+|..+++.|..+ ...+|+||.+++.|||++
T Consensus 572 g~kvLIFsq~~~~ld~L~~~L~~~---------g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~ 642 (800)
T 3mwy_W 572 GHRVLIFSQMVRMLDILGDYLSIK---------GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLM 642 (800)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHH---------TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCT
T ss_pred CCeEEEEechHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCcc
Confidence 568999999999999999998763 67889999999999999999999874 346999999999999999
Q ss_pred CccEEEcCCCCccccccCCCCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCHHHH
Q psy1907 190 NIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGEEVL 252 (1320)
Q Consensus 190 ~I~~VID~g~~k~~~yd~~~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~~~~ 252 (1320)
++++||.++. |-+...+.||.||++|.|..+. ..+|+|+++..+
T Consensus 643 ~a~~VI~~D~------------------~wnp~~~~Qa~gR~~RiGQ~k~-V~Vyrlv~~~Ti 686 (800)
T 3mwy_W 643 TADTVVIFDS------------------DWNPQADLQAMARAHRIGQKNH-VMVYRLVSKDTV 686 (800)
T ss_dssp TCCEEEESSC------------------CSCSHHHHHHHTTTSCSSCCSC-EEEEEEEETTSH
T ss_pred ccceEEEecC------------------CCChhhHHHHHHHHHhcCCCce-EEEEEEecCCCH
Confidence 9999998776 4467889999999999887543 367888876543
No 113
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.94 E-value=4.4e-09 Score=112.58 Aligned_cols=122 Identities=19% Similarity=0.120 Sum_probs=88.5
Q ss_pred CChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccC----CCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCC
Q psy1907 670 PIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGF----TKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGC 745 (1320)
Q Consensus 670 Pi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~----~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~ 745 (1320)
..+++..+.+.++.+++.+++.++||||||+.....+++.-. ...+.+++++.|+|..|..+++++....+. .
T Consensus 23 ~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~---~ 99 (207)
T 2gxq_A 23 TPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH---L 99 (207)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT---S
T ss_pred CCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc---c
Confidence 346677888888999999999999999999975555554322 123457999999999999999988776432 2
Q ss_pred eeeEEeecCcc------CCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 746 EVGYAIRFEDC------TSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 746 ~VGY~irfe~~------~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
.|+.-....+. ......|+++|.|.|++.+.... .+.++++||+||||.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~ 155 (207)
T 2gxq_A 100 KVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADE 155 (207)
T ss_dssp CEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHH
T ss_pred eEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhH
Confidence 23222211111 01346899999999998887643 688999999999994
No 114
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.92 E-value=4e-09 Score=116.15 Aligned_cols=123 Identities=16% Similarity=0.133 Sum_probs=88.9
Q ss_pred ChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCC-CCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeE
Q psy1907 671 IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFT-KDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGY 749 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~-~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY 749 (1320)
-+++..+.+..+.+++.++|+|+||||||......+++.-.. ..+.++++..|+|..|..+++++.. ++...|..++.
T Consensus 53 ~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~ 131 (237)
T 3bor_A 53 PSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILA-LGDYMGATCHA 131 (237)
T ss_dssp CCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH-HTTTTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHH-HhhhcCceEEE
Confidence 356667788888888889999999999998866666554322 2344799999999999999887754 45455555554
Q ss_pred EeecCccC-------CCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 750 AIRFEDCT-------SERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 750 ~irfe~~~-------s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
.+...+.. .....|+++|.|.|++.+.... .+.++++|||||||.
T Consensus 132 ~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 184 (237)
T 3bor_A 132 CIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADE 184 (237)
T ss_dssp ECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHH
T ss_pred EECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchH
Confidence 43332211 2237899999999999887654 578899999999994
No 115
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.87 E-value=7.5e-09 Score=112.94 Aligned_cols=120 Identities=23% Similarity=0.273 Sum_probs=84.2
Q ss_pred hhhHHHHHHHHHhCCEEEEEcCCCCchhc--HHHHHHH--HccC---CCCCcEEEEecccHHHHHHHHHHHHHHhCCCCC
Q psy1907 672 YPFKQDLIDAVRDHQVLIIEGETGSGKTT--QIPQYLH--EAGF---TKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLG 744 (1320)
Q Consensus 672 ~~~~~~il~~i~~~~v~ii~geTGsGKTT--qvPq~l~--e~~~---~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG 744 (1320)
+++..+.+.++.+++.++++++||||||. ++|.+.. .... ...+.++++..|+|..|..+++++..-.. .|
T Consensus 44 ~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~--~~ 121 (228)
T 3iuy_A 44 TPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSY--KG 121 (228)
T ss_dssp CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCC--TT
T ss_pred CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcc--cC
Confidence 55667788888889999999999999998 5664432 1111 11344688899999999999998877532 23
Q ss_pred CeeeEEeecCccC------CCCccEEEEccHHHHHHHhcCC-CCCCccEEEEcccc
Q psy1907 745 CEVGYAIRFEDCT------SERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAH 793 (1320)
Q Consensus 745 ~~VGY~irfe~~~------s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~H 793 (1320)
..++......+.. ..+..|+++|.|.|++.+..+. .+.++++|||||||
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah 177 (228)
T 3iuy_A 122 LKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEAD 177 (228)
T ss_dssp CCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHH
T ss_pred ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHH
Confidence 3343332222211 2346899999999999887766 58999999999999
No 116
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.86 E-value=4.9e-09 Score=138.01 Aligned_cols=117 Identities=19% Similarity=0.290 Sum_probs=94.3
Q ss_pred CCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeee
Q psy1907 669 LPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVG 748 (1320)
Q Consensus 669 LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VG 748 (1320)
...+++..+.+.++.+++.++|+|+||||||+..-..++.. + ..+.+++++.|.|..|...+.++.+..+ .||
T Consensus 85 f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~-l-~~g~rvL~l~PtkaLa~Q~~~~l~~~~~-----~vg 157 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS-L-KNKQRVIYTSPIKALSNQKYRELLAEFG-----DVG 157 (1010)
T ss_dssp SCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHH-H-HTTCEEEEEESSHHHHHHHHHHHHHHHS-----CEE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHH-h-ccCCeEEEECChHHHHHHHHHHHHHHhC-----CEE
Confidence 34678888999999999999999999999999753333322 1 2345799999999999999999988876 466
Q ss_pred EEeecCccCCCCccEEEEccHHHHHHHhcC-CCCCCccEEEEcccc
Q psy1907 749 YAIRFEDCTSERTIIKYMTDGTLHREFLSE-PDLASYSVMIIDEAH 793 (1320)
Q Consensus 749 Y~irfe~~~s~~T~i~y~TdG~Llrel~~d-p~L~~ys~iIiDE~H 793 (1320)
. +..+...++++.|++||.|+|.+.+..+ ..+.++++|||||||
T Consensus 158 l-ltGd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH 202 (1010)
T 2xgj_A 158 L-MTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH 202 (1010)
T ss_dssp E-ECSSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGG
T ss_pred E-EeCCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechh
Confidence 6 3345555677899999999999888765 468999999999999
No 117
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.86 E-value=2.2e-09 Score=115.38 Aligned_cols=127 Identities=18% Similarity=0.137 Sum_probs=85.4
Q ss_pred hccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccC----CCCCcEEEEecccHHHHHH-HHHHHHHHhC
Q psy1907 666 KKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGF----TKDKMKIGCTQPRRVAAMS-VSARVAEEMG 740 (1320)
Q Consensus 666 r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~----~~~~~~I~~tQPRRvAA~s-vA~rva~e~~ 740 (1320)
...++.+++..+.+..+.+++.++|.|+||||||+.....+.+.-. ...+.+++++.|++..+.. +++.+..-.+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 3456778888899999988899999999999999988766654211 1123468888999988888 4444433322
Q ss_pred CCCCCeeeEEeecCccC------CCCccEEEEccHHHHHHHhcC-------CCCCCccEEEEccccc
Q psy1907 741 VKLGCEVGYAIRFEDCT------SERTIIKYMTDGTLHREFLSE-------PDLASYSVMIIDEAHP 794 (1320)
Q Consensus 741 ~~lG~~VGY~irfe~~~------s~~T~i~y~TdG~Llrel~~d-------p~L~~ys~iIiDE~HE 794 (1320)
. |-.|+.-....+.. ..+..|+++|.+.|++.+... ..+.++++|||||||.
T Consensus 109 ~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~ 173 (216)
T 3b6e_A 109 K--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH 173 (216)
T ss_dssp T--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--
T ss_pred c--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchh
Confidence 2 33333211111110 113679999999999988765 4578999999999995
No 118
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.85 E-value=1e-08 Score=112.29 Aligned_cols=124 Identities=19% Similarity=0.134 Sum_probs=88.8
Q ss_pred ChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCC-CCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeE
Q psy1907 671 IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFT-KDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGY 749 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~-~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY 749 (1320)
-+++..+.+.++.+++.++++++||||||...-..+++.-.. ..+.++++..|+|..|..+++++..-.....|-.|+.
T Consensus 47 ~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 126 (230)
T 2oxc_A 47 PSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHV 126 (230)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEE
Confidence 356677888889899999999999999998744444433222 2345799999999999999988865432222555554
Q ss_pred EeecCcc-----CCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 750 AIRFEDC-----TSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 750 ~irfe~~-----~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
-....+. .-.+..|+++|.|.|++.+..+. .+.++++|||||||.
T Consensus 127 ~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~ 177 (230)
T 2oxc_A 127 FIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADK 177 (230)
T ss_dssp ECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHH
T ss_pred EeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchH
Confidence 3332211 12357899999999999887654 578899999999993
No 119
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.84 E-value=8.6e-09 Score=111.85 Aligned_cols=123 Identities=16% Similarity=0.127 Sum_probs=88.2
Q ss_pred ChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCC-CCCcEEEEecccHHHHHHHHHHHHHHhCCCC----CC
Q psy1907 671 IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFT-KDKMKIGCTQPRRVAAMSVSARVAEEMGVKL----GC 745 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~-~~~~~I~~tQPRRvAA~svA~rva~e~~~~l----G~ 745 (1320)
-+++..+.+.++.+++.++++++||||||...-..+++.-.. ..+.++++.-|+|..|..+++++.+-.+ .. |.
T Consensus 27 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~ 105 (219)
T 1q0u_A 27 PTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITK-FCPKDRMI 105 (219)
T ss_dssp CCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHT-TSCGGGCC
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhh-hcccccce
Confidence 466778888999899999999999999999654444443222 2244688999999999998887755432 22 33
Q ss_pred eeeEEeecCc------cCCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 746 EVGYAIRFED------CTSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 746 ~VGY~irfe~------~~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
.++.-....+ ....+..|+++|.|.|++.+.... .+.++++|||||||.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 161 (219)
T 1q0u_A 106 VARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL 161 (219)
T ss_dssp CEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHH
T ss_pred EEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchH
Confidence 4443333222 112356799999999998887654 578999999999994
No 120
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.84 E-value=1.6e-08 Score=109.57 Aligned_cols=124 Identities=13% Similarity=0.024 Sum_probs=88.9
Q ss_pred ChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCC-CCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeE
Q psy1907 671 IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTK-DKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGY 749 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~-~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY 749 (1320)
-+++..+.+.++.++..++++++||||||...-..+++.-... ++.++++..|+|..|..+++++..-....-|..|+.
T Consensus 37 ~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~ 116 (220)
T 1t6n_A 37 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAV 116 (220)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEE
Confidence 4566778888888888899999999999987655555432222 234799999999999998888765432222555654
Q ss_pred EeecCcc-------CCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 750 AIRFEDC-------TSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 750 ~irfe~~-------~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
-....+. ......|+++|.|.|++.+.... .+.++++|||||||.
T Consensus 117 ~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 169 (220)
T 1t6n_A 117 FFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK 169 (220)
T ss_dssp ESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHH
T ss_pred EeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHH
Confidence 3332211 11245899999999999887655 688999999999994
No 121
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.81 E-value=5.8e-09 Score=116.94 Aligned_cols=129 Identities=22% Similarity=0.309 Sum_probs=93.6
Q ss_pred ChhhHHHHHHHHHhCCEEEEEcCCCCchhcH--HHHH--HHHccCC-CCCcEEEEecccHHHHHHHHHHHHHHhCCCCCC
Q psy1907 671 IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQ--IPQY--LHEAGFT-KDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGC 745 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~v~ii~geTGsGKTTq--vPq~--l~e~~~~-~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~ 745 (1320)
.+++..+.+..+.+++.++++|+||||||.. +|.+ +...... ..+.++++.-|+|..|..++.++.. ++...|.
T Consensus 77 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~-~~~~~~~ 155 (262)
T 3ly5_A 77 MTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKE-LMTHHVH 155 (262)
T ss_dssp CCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHH-HTTTCCS
T ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHH-HHhhcCc
Confidence 4566778888888888899999999999984 5533 3332221 2345699999999999999887765 4555666
Q ss_pred eeeEEeecCccC------CCCccEEEEccHHHHHHHhcCC--CCCCccEEEEcccccceEEEcCCc
Q psy1907 746 EVGYAIRFEDCT------SERTIIKYMTDGTLHREFLSEP--DLASYSVMIIDEAHPKVYVIDPGF 803 (1320)
Q Consensus 746 ~VGY~irfe~~~------s~~T~i~y~TdG~Llrel~~dp--~L~~ys~iIiDE~HER~~ViD~G~ 803 (1320)
.|+..+...... .....|+++|.|.|+..+...+ .+.++++|||||||. +.|.|+
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~---l~~~~~ 218 (262)
T 3ly5_A 156 TYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADR---ILDVGF 218 (262)
T ss_dssp CEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHH---HHHTTC
T ss_pred eEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHH---HhhhhH
Confidence 666554433221 1246799999999999988765 688999999999993 345454
No 122
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.80 E-value=7.6e-09 Score=123.13 Aligned_cols=122 Identities=11% Similarity=0.045 Sum_probs=90.5
Q ss_pred ccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHH-HHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCC
Q psy1907 667 KSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQI-PQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGC 745 (1320)
Q Consensus 667 ~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqv-Pq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~ 745 (1320)
....-+++..+.+..+.+++.++++++||||||+.. +..+... ..+.++++..|+|..|..++.++.. ++. .|-
T Consensus 18 ~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~~~-~~~-~~~ 92 (414)
T 3oiy_A 18 FGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQK-LAD-EKV 92 (414)
T ss_dssp HSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHH-HCC-SSC
T ss_pred cCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHHHH-Hcc-CCc
Confidence 344557888899999999999999999999999832 2122211 2345699999999999999999887 444 666
Q ss_pred eeeEEeecCcc----------CCCCccEEEEccHHHHHHHhcCCCCCCccEEEEccccc
Q psy1907 746 EVGYAIRFEDC----------TSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 746 ~VGY~irfe~~----------~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HE 794 (1320)
.|+.-....+. ...+..|+++|.|.|++.+.. ..+.++++|||||||.
T Consensus 93 ~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEaH~ 150 (414)
T 3oiy_A 93 KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDA 150 (414)
T ss_dssp CEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSEEEESCHHH
T ss_pred eEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccEEEEeChHh
Confidence 67654443322 122478999999999877654 5677999999999993
No 123
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.75 E-value=3.3e-08 Score=132.05 Aligned_cols=116 Identities=19% Similarity=0.226 Sum_probs=84.6
Q ss_pred hhhHHHHHHHHHh----CC--EEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCC
Q psy1907 672 YPFKQDLIDAVRD----HQ--VLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGC 745 (1320)
Q Consensus 672 ~~~~~~il~~i~~----~~--v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~ 745 (1320)
.++..+.+..+.+ ++ -++|+|+||||||...-..++... ..++++++..|++..|...++++.+.++ ..|-
T Consensus 605 t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~--~~g~~vlvlvPt~~La~Q~~~~~~~~~~-~~~i 681 (1151)
T 2eyq_A 605 TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV--DNHKQVAVLVPTTLLAQQHYDNFRDRFA-NWPV 681 (1151)
T ss_dssp CHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH--TTTCEEEEECSSHHHHHHHHHHHHHHST-TTTC
T ss_pred CHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHH--HhCCeEEEEechHHHHHHHHHHHHHHhh-cCCC
Confidence 5555566665544 55 899999999999987543333221 2345799999999999999999987654 4566
Q ss_pred eeeEEeecCccC----------CCCccEEEEccHHHHHHHhcCCCCCCccEEEEccccc
Q psy1907 746 EVGYAIRFEDCT----------SERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 746 ~VGY~irfe~~~----------s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HE 794 (1320)
.|++-.++.... +.+..|+++|.++| ..+-.+.++++|||||+|.
T Consensus 682 ~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll----~~~~~~~~l~lvIiDEaH~ 736 (1151)
T 2eyq_A 682 RIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL----QSDVKFKDLGLLIVDEEHR 736 (1151)
T ss_dssp CEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH----HSCCCCSSEEEEEEESGGG
T ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH----hCCccccccceEEEechHh
Confidence 777766664432 23578999999866 3456789999999999994
No 124
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.73 E-value=4.3e-08 Score=108.74 Aligned_cols=122 Identities=20% Similarity=0.206 Sum_probs=85.6
Q ss_pred hhhHHHHHHHHHhCCEEEEEcCCCCchhcH--HHHH--HHHccCC------CCCcEEEEecccHHHHHHHHHHHHHHhCC
Q psy1907 672 YPFKQDLIDAVRDHQVLIIEGETGSGKTTQ--IPQY--LHEAGFT------KDKMKIGCTQPRRVAAMSVSARVAEEMGV 741 (1320)
Q Consensus 672 ~~~~~~il~~i~~~~v~ii~geTGsGKTTq--vPq~--l~e~~~~------~~~~~I~~tQPRRvAA~svA~rva~e~~~ 741 (1320)
+++..+.+.++.+++.++++++||||||.. +|-+ +...+.. ..+.++++.-|+|-.|..+++++..- +.
T Consensus 47 ~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~-~~ 125 (253)
T 1wrb_A 47 TPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKF-SL 125 (253)
T ss_dssp CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHH-HT
T ss_pred CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHH-hc
Confidence 456677888888889999999999999985 3432 2222211 12346888999999999998887553 33
Q ss_pred CCCCeeeEEeecCcc------CCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 742 KLGCEVGYAIRFEDC------TSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 742 ~lG~~VGY~irfe~~------~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
..|-.++......+. ......|+++|.|.|++.+.... .+.++++|||||||.
T Consensus 126 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 185 (253)
T 1wrb_A 126 NTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADR 185 (253)
T ss_dssp TSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHH
T ss_pred cCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHH
Confidence 334444433322221 12356899999999999887765 688999999999995
No 125
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.70 E-value=7.1e-08 Score=110.39 Aligned_cols=123 Identities=18% Similarity=0.159 Sum_probs=87.9
Q ss_pred hhhHHHHHHHHHhC--CEEEEEcCCCCchhcHHHHHHHHccCC-CCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeee
Q psy1907 672 YPFKQDLIDAVRDH--QVLIIEGETGSGKTTQIPQYLHEAGFT-KDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVG 748 (1320)
Q Consensus 672 ~~~~~~il~~i~~~--~v~ii~geTGsGKTTqvPq~l~e~~~~-~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VG 748 (1320)
+++..+.+..+.++ +.++++|+||||||...-..+++.-.. ..+.+++|.-|.|-.|..++..+..-....-|-.|+
T Consensus 116 t~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~ 195 (300)
T 3fmo_B 116 SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLA 195 (300)
T ss_dssp CHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEE
T ss_pred CHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 34456677777776 899999999999998643333332222 223368888899999999887765543333356677
Q ss_pred EEeecCccC---CCCccEEEEccHHHHHHHhcCC--CCCCccEEEEccccc
Q psy1907 749 YAIRFEDCT---SERTIIKYMTDGTLHREFLSEP--DLASYSVMIIDEAHP 794 (1320)
Q Consensus 749 Y~irfe~~~---s~~T~i~y~TdG~Llrel~~dp--~L~~ys~iIiDE~HE 794 (1320)
+.++..+.. .....|+++|.|.|+..+...+ .+.++++|||||||.
T Consensus 196 ~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~ 246 (300)
T 3fmo_B 196 YAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (300)
T ss_dssp EESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHH
T ss_pred EEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHH
Confidence 776655432 2356799999999999997644 578999999999994
No 126
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.69 E-value=7.1e-09 Score=123.98 Aligned_cols=124 Identities=15% Similarity=0.104 Sum_probs=92.3
Q ss_pred cCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCee
Q psy1907 668 SLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEV 747 (1320)
Q Consensus 668 ~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~V 747 (1320)
.++.+++..+.+..+.++ .+||.++||+|||.+...++.+.-. ..++++++..|++..+...++.+.+..|.. +..|
T Consensus 7 ~~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~~~~~-~~~v 83 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRLFNLP-PEKI 83 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHHBCSC-GGGE
T ss_pred CCCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHHhCcc-hhhe
Confidence 356678888899888888 8999999999999999888766422 234479999999999999999998876541 1123
Q ss_pred eEEeecCcc-----CCCCccEEEEccHHHHHHHhcCC-CCCCccEEEEccccc
Q psy1907 748 GYAIRFEDC-----TSERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAHP 794 (1320)
Q Consensus 748 GY~irfe~~-----~s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~HE 794 (1320)
+.-...... ...+..|+++|.++|.+.+.... .+.++++|||||||.
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~ 136 (494)
T 1wp9_A 84 VALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHR 136 (494)
T ss_dssp EEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGG
T ss_pred EEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcc
Confidence 321111100 01246799999999999887655 588999999999995
No 127
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.66 E-value=5.1e-09 Score=133.17 Aligned_cols=128 Identities=17% Similarity=0.146 Sum_probs=88.9
Q ss_pred hccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHcc----CCCCCcEEEEecccHHHHHHH-HHHHHHHhC
Q psy1907 666 KKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAG----FTKDKMKIGCTQPRRVAAMSV-SARVAEEMG 740 (1320)
Q Consensus 666 r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~----~~~~~~~I~~tQPRRvAA~sv-A~rva~e~~ 740 (1320)
+..++.+++..+++.++.+++.+||.++||||||.+....+++.- -...+++++|+.|++..|... +.++.+..+
T Consensus 3 ~~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 3 GAMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp ----CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CCCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 456778889999999999999999999999999988765554421 111224689999999999998 888877665
Q ss_pred C--CCCCeeeEEeecCc--cCCCCccEEEEccHHHHHHHhcCC-------CCCCccEEEEcccc
Q psy1907 741 V--KLGCEVGYAIRFED--CTSERTIIKYMTDGTLHREFLSEP-------DLASYSVMIIDEAH 793 (1320)
Q Consensus 741 ~--~lG~~VGY~irfe~--~~s~~T~i~y~TdG~Llrel~~dp-------~L~~ys~iIiDE~H 793 (1320)
. .++.-.|..-.-+. ....+..|+|+|.|+|++.+.+.+ .+.++++|||||||
T Consensus 83 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH 146 (699)
T 4gl2_A 83 KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECH 146 (699)
T ss_dssp TTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGG
T ss_pred cCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECcc
Confidence 3 33333333221110 011457899999999999886543 67889999999999
No 128
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.64 E-value=4.2e-08 Score=108.24 Aligned_cols=121 Identities=19% Similarity=0.110 Sum_probs=84.1
Q ss_pred hhhHHHHHHHHHhCCEEEEEcCCCCchhcH--HHHHH--HHccCC--CCCcEEEEecccHHHHHHHHHHHHHHhCCCCCC
Q psy1907 672 YPFKQDLIDAVRDHQVLIIEGETGSGKTTQ--IPQYL--HEAGFT--KDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGC 745 (1320)
Q Consensus 672 ~~~~~~il~~i~~~~v~ii~geTGsGKTTq--vPq~l--~e~~~~--~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~ 745 (1320)
+++..+.+.++.+++.++++++||||||.. +|-.. ...... ..+.++++.-|.|..|..+++.+.. ++...|-
T Consensus 53 ~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~-~~~~~~~ 131 (242)
T 3fe2_A 53 TAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAE-YCRACRL 131 (242)
T ss_dssp CHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHH-HHHHTTC
T ss_pred CHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHH-HHhhcCc
Confidence 456777888888999999999999999975 45332 221111 2244688899999999988776544 2222344
Q ss_pred eeeEEeecCccC------CCCccEEEEccHHHHHHHhcCC-CCCCccEEEEcccc
Q psy1907 746 EVGYAIRFEDCT------SERTIIKYMTDGTLHREFLSEP-DLASYSVMIIDEAH 793 (1320)
Q Consensus 746 ~VGY~irfe~~~------s~~T~i~y~TdG~Llrel~~dp-~L~~ys~iIiDE~H 793 (1320)
.++.-....+.. .....|+++|.|.|+..+.... .+.++++|||||||
T Consensus 132 ~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah 186 (242)
T 3fe2_A 132 KSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEAD 186 (242)
T ss_dssp CEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHH
T ss_pred eEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHH
Confidence 444433222111 1246899999999999887665 68999999999999
No 129
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.62 E-value=3.7e-08 Score=111.32 Aligned_cols=122 Identities=11% Similarity=0.010 Sum_probs=84.5
Q ss_pred CCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeee
Q psy1907 669 LPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVG 748 (1320)
Q Consensus 669 LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VG 748 (1320)
+..+++..+.+..+.++...+|+++||||||.+.-..+... ...+++++++.-|+|..+...++++.+ ++...+..++
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~l~~-~~~~~~~~~~ 189 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYY-LENYEGKILIIVPTTALTTQMADDFVD-YRLFSHAMIK 189 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHH-HHHCSSEEEEECSSHHHHHHHHHHHHH-HTSCCGGGEE
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHH-HHcCCCeEEEEECCHHHHHHHHHHHHH-hcccccceEE
Confidence 45666777777776666777889999999999874443321 112233789999999988888888865 4433334444
Q ss_pred EEeecCccCC---CCccEEEEccHHHHHHHhcCCCCCCccEEEEccccc
Q psy1907 749 YAIRFEDCTS---ERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 749 Y~irfe~~~s---~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HE 794 (1320)
.-....+... ....|+++|.|.|++.. +..+.++++|||||||.
T Consensus 190 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~--~~~~~~~~~vIiDEaH~ 236 (282)
T 1rif_A 190 KIGGGASKDDKYKNDAPVVVGTWQTVVKQP--KEWFSQFGMMMNDECHL 236 (282)
T ss_dssp ECSTTCSSTTCCCTTCSEEEECHHHHTTSC--GGGGGGEEEEEEETGGG
T ss_pred EEeCCCcchhhhccCCcEEEEchHHHHhhH--HHHHhhCCEEEEECCcc
Confidence 4333322221 56789999999887652 23578899999999995
No 130
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.61 E-value=1.1e-07 Score=116.77 Aligned_cols=125 Identities=18% Similarity=0.126 Sum_probs=89.0
Q ss_pred CChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCC---CCcEEEEecccHHHHHHHHHHHHHHhCCCCCCe
Q psy1907 670 PIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTK---DKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCE 746 (1320)
Q Consensus 670 Pi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~---~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~ 746 (1320)
.-.++..+.+.++.+++.+||+++||||||.+.-..+++.-... .+.++++.-|.|..|...+..+..-.. ..|-.
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~~~ 82 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFE-RLGYN 82 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH-TTTCC
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhc-cCCcE
Confidence 34567788889998899999999999999988554444322111 145689999999888888777665431 12444
Q ss_pred eeEEeecCccCC------CCccEEEEccHHHHHHHhcCC--CCCCccEEEEcccccc
Q psy1907 747 VGYAIRFEDCTS------ERTIIKYMTDGTLHREFLSEP--DLASYSVMIIDEAHPK 795 (1320)
Q Consensus 747 VGY~irfe~~~s------~~T~i~y~TdG~Llrel~~dp--~L~~ys~iIiDE~HER 795 (1320)
|+.-........ ....|+++|.|.|++.+.... .+.++++|||||||.-
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~ 139 (555)
T 3tbk_A 83 IASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNT 139 (555)
T ss_dssp EEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGC
T ss_pred EEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECcccc
Confidence 444333222111 236899999999999988765 5888999999999964
No 131
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.57 E-value=1.3e-07 Score=116.34 Aligned_cols=125 Identities=18% Similarity=0.128 Sum_probs=86.4
Q ss_pred CChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCC---CCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCe
Q psy1907 670 PIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFT---KDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCE 746 (1320)
Q Consensus 670 Pi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~---~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~ 746 (1320)
.-.++..+.+.++.+++.+||+++||||||.+.-..+++.-.. ..+.++++.-|+|..|...+..+..-.. ..|-.
T Consensus 7 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~~~ 85 (556)
T 4a2p_A 7 KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE-RQGYS 85 (556)
T ss_dssp -CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG-GGTCC
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhc-ccCce
Confidence 3456777888888888899999999999998854444332111 1145789999999888888877765432 11333
Q ss_pred eeEEeecCccC------CCCccEEEEccHHHHHHHhcCC--CCCCccEEEEcccccc
Q psy1907 747 VGYAIRFEDCT------SERTIIKYMTDGTLHREFLSEP--DLASYSVMIIDEAHPK 795 (1320)
Q Consensus 747 VGY~irfe~~~------s~~T~i~y~TdG~Llrel~~dp--~L~~ys~iIiDE~HER 795 (1320)
|+.-....... .....|+++|.|.|++.+.... .+.++++|||||||.-
T Consensus 86 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~ 142 (556)
T 4a2p_A 86 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNT 142 (556)
T ss_dssp EEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGC
T ss_pred EEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCccc
Confidence 33322111111 1246799999999999988765 5889999999999964
No 132
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=98.55 E-value=5.1e-08 Score=129.32 Aligned_cols=115 Identities=13% Similarity=0.150 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCC----eee
Q psy1907 673 PFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGC----EVG 748 (1320)
Q Consensus 673 ~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~----~VG 748 (1320)
++..+.+..+.+++.++++|+||||||+ +...++..... .+.++++..|.|..|..+++++..-. ..+|- .||
T Consensus 59 ~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-~~~~~lil~PtreLa~Q~~~~l~~l~-~~~~i~~~~~v~ 135 (1054)
T 1gku_B 59 AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-KGKRCYVIFPTSLLVIQAAETIRKYA-EKAGVGTENLIG 135 (1054)
T ss_dssp HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-TSCCEEEEESCHHHHHHHHHHHHHHH-TTTCCSGGGSEE
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-cCCeEEEEeccHHHHHHHHHHHHHHH-hhcCCCccceEE
Confidence 8888899999999999999999999996 33333332222 34468999999999999998876543 22333 454
Q ss_pred EEeecCc---------cCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEccccc
Q psy1907 749 YAIRFED---------CTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 749 Y~irfe~---------~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HE 794 (1320)
.-+...+ .... +.|+++|.|.|++.+.. |+++++|||||||+
T Consensus 136 ~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~---L~~l~~lViDEah~ 186 (1054)
T 1gku_B 136 YYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE---LGHFDFIFVDDVDA 186 (1054)
T ss_dssp ECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT---SCCCSEEEESCHHH
T ss_pred EEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH---hccCCEEEEeChhh
Confidence 4333221 1122 78999999999998765 88999999999995
No 133
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.55 E-value=8.1e-08 Score=116.32 Aligned_cols=112 Identities=19% Similarity=0.117 Sum_probs=86.2
Q ss_pred cCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCe-
Q psy1907 668 SLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCE- 746 (1320)
Q Consensus 668 ~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~- 746 (1320)
.++.+++..+.++++.+++.++|+|+||||||.+.-..+... ++++++..|++..+...++++.+ + |..
T Consensus 91 ~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----~~~~Lvl~P~~~L~~Q~~~~~~~-~----~~~~ 160 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGI-F----GEEY 160 (472)
T ss_dssp CCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----CSCEEEEESSHHHHHHHHHHGGG-G----CGGG
T ss_pred CCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHh-C----CCcc
Confidence 356678888999999888889999999999999987777665 34689999999888888777766 4 444
Q ss_pred eeEEeecCccCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEccccc
Q psy1907 747 VGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 747 VGY~irfe~~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HE 794 (1320)
||.-. ...+....|+++|.++|.+.+.. ...++++|||||+|.
T Consensus 161 v~~~~---g~~~~~~~Ivv~T~~~l~~~~~~--~~~~~~liIvDEaH~ 203 (472)
T 2fwr_A 161 VGEFS---GRIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHH 203 (472)
T ss_dssp EEEBS---SSCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEETGGG
T ss_pred eEEEC---CCcCCcCCEEEEEcHHHHHHHHH--hcCCCCEEEEECCcC
Confidence 55422 22334678999999999887631 224699999999995
No 134
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.51 E-value=1.7e-07 Score=124.52 Aligned_cols=120 Identities=9% Similarity=0.036 Sum_probs=91.3
Q ss_pred CChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeE
Q psy1907 670 PIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGY 749 (1320)
Q Consensus 670 Pi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY 749 (1320)
.-++...+.+..+.+++-++++|+||||||+. ......... ..+.++++..|+|..|..++.++.. ++ ..|-.|+.
T Consensus 78 ~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~-~l~~il~~~-~~~~~~Lil~PtreLa~Q~~~~l~~-l~-~~~i~v~~ 153 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTF-GMMTALWLA-RKGKKSALVFPTVTLVKQTLERLQK-LA-DEKVKIFG 153 (1104)
T ss_dssp CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHH-HHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHT-TS-CTTSCEEE
T ss_pred CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHH-HHHHHHHHH-hcCCeEEEEechHHHHHHHHHHHHH-hh-CCCCeEEE
Confidence 34566778888888889999999999999993 322211111 3345699999999999999999987 66 66778887
Q ss_pred EeecCccC----------CCCccEEEEccHHHHHHHhcCCCCCCccEEEEccccc
Q psy1907 750 AIRFEDCT----------SERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 750 ~irfe~~~----------s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HE 794 (1320)
-+...+.. ..+..|+++|.|.|++.+.. ..+.++++|||||||.
T Consensus 154 l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEaH~ 207 (1104)
T 4ddu_A 154 FYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDA 207 (1104)
T ss_dssp ECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESCHHH
T ss_pred EeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeCCCc
Confidence 66655431 12478999999999887654 5678999999999994
No 135
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.48 E-value=3.1e-07 Score=101.44 Aligned_cols=110 Identities=19% Similarity=0.107 Sum_probs=79.1
Q ss_pred CChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCe-ee
Q psy1907 670 PIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCE-VG 748 (1320)
Q Consensus 670 Pi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~-VG 748 (1320)
.-.++..+.+..+.++.-++|+|+||+|||.+.-..+... +.++++.-|++..+....+++.+ + |.. |+
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~-~----~~~~v~ 162 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGI-F----GEEYVG 162 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----CSCEEEEESSHHHHHHHHHHHGG-G----CGGGEE
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHh-C----CCCeEE
Confidence 3455666777777777779999999999999987776664 23588888998777776666655 3 444 55
Q ss_pred EEeecCccCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEccccc
Q psy1907 749 YAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 749 Y~irfe~~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HE 794 (1320)
.-.. .....+.|.++|.+.+.+.+.. ....+++|||||+|.
T Consensus 163 ~~~g---~~~~~~~i~v~T~~~l~~~~~~--~~~~~~llIiDEaH~ 203 (237)
T 2fz4_A 163 EFSG---RIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHH 203 (237)
T ss_dssp EESS---SCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEECSSC
T ss_pred EEeC---CCCCcCCEEEEeHHHHHhhHHH--hcccCCEEEEECCcc
Confidence 3222 2234678999999999876642 234699999999994
No 136
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=98.46 E-value=5.3e-07 Score=97.84 Aligned_cols=84 Identities=19% Similarity=0.261 Sum_probs=69.4
Q ss_pred EecHhhHHHHhcccCCcc-CCeEEEecchHHh-------------hhhccCCCchhhhccChHHHHHHHHHcCCCCcccc
Q psy1907 822 PISKASANQRAGRAGRVA-AGKCFRLYTAWAY-------------KHELEDNTVPEIQRINLGNAVLMLKALGINDLIHF 887 (1320)
Q Consensus 822 ~iSkasa~QR~GRAGR~~-pG~cyrLyt~~~~-------------~~~l~~~~~PEI~R~~L~~~vL~lk~lgi~d~~~f 887 (1320)
|.|.++..||.|||||.+ +|.||.+|+.... ...++..+.|||.+.++..+++.++.++.++...|
T Consensus 109 p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~ 188 (212)
T 3eaq_A 109 PDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLY 188 (212)
T ss_dssp CSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTT
T ss_pred CcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 457899999999999996 8999999998751 12356668899999999999999999987766666
Q ss_pred -----cCCCCCChHHHHHHHHHH
Q psy1907 888 -----DFLDPPPHETLVLALEQL 905 (1320)
Q Consensus 888 -----~fldpP~~~~l~~Ale~L 905 (1320)
+|+++|+.+.+..|+..|
T Consensus 189 ~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 189 QDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh
Confidence 678999999999998766
No 137
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.45 E-value=4e-07 Score=117.72 Aligned_cols=123 Identities=19% Similarity=0.131 Sum_probs=86.7
Q ss_pred ChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCC---CCcEEEEecccHHHHHHHHHHHHHHhCCCCCCee
Q psy1907 671 IYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTK---DKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEV 747 (1320)
Q Consensus 671 i~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~---~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~V 747 (1320)
..++..+.+..+.+++.+||+++||||||.+.-..+++.-... .++++++.-|++..+...+.++..-.. ..|-.|
T Consensus 249 l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~-~~~~~v 327 (797)
T 4a2q_A 249 ARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE-RQGYSV 327 (797)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG-GGTCCE
T ss_pred CCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc-cCCceE
Confidence 4567788889998889999999999999988655554432111 145799999999888888777655431 113334
Q ss_pred eEEeecCccC------CCCccEEEEccHHHHHHHhcCC--CCCCccEEEEccccc
Q psy1907 748 GYAIRFEDCT------SERTIIKYMTDGTLHREFLSEP--DLASYSVMIIDEAHP 794 (1320)
Q Consensus 748 GY~irfe~~~------s~~T~i~y~TdG~Llrel~~dp--~L~~ys~iIiDE~HE 794 (1320)
+.-....+.. ..+..|+++|.|+|++.+.... .+.++++|||||||.
T Consensus 328 ~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~ 382 (797)
T 4a2q_A 328 QGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHN 382 (797)
T ss_dssp EEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGG
T ss_pred EEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccc
Confidence 3322222111 1356899999999999988765 578899999999996
No 138
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.44 E-value=1.6e-07 Score=114.89 Aligned_cols=122 Identities=11% Similarity=-0.011 Sum_probs=85.7
Q ss_pred CChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeE
Q psy1907 670 PIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGY 749 (1320)
Q Consensus 670 Pi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY 749 (1320)
.-+++..+.++.+.++..++|+|+||||||.+.-..+...- ..+++++++.-|++..|...++++ +.++...+..|+.
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~-~~~~~~vlvl~P~~~L~~Q~~~~~-~~~~~~~~~~v~~ 190 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYL-ENYEGKILIIVPTTALTTQMADDF-VDYRLFSHAMIKK 190 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHH-HHCSSEEEEEESSHHHHHHHHHHH-HHTTSSCGGGEEE
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHH-hCCCCeEEEEECcHHHHHHHHHHH-HHhhcCCccceEE
Confidence 44666777777777778899999999999999755444321 122337999999999998888888 4444333445554
Q ss_pred EeecCccC---CCCccEEEEccHHHHHHHhcCCCCCCccEEEEcccccc
Q psy1907 750 AIRFEDCT---SERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPK 795 (1320)
Q Consensus 750 ~irfe~~~---s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HER 795 (1320)
-.++.+.. .....|+++|.+.|++. ....+.++++|||||+|.-
T Consensus 191 ~~~~~~~~~~~~~~~~I~i~T~~~l~~~--~~~~~~~~~liIiDE~H~~ 237 (510)
T 2oca_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECHLA 237 (510)
T ss_dssp CGGGCCTTGGGCTTCSEEEEEHHHHTTS--CGGGGGGEEEEEEETGGGC
T ss_pred EecCCccccccccCCcEEEEeHHHHhhc--hhhhhhcCCEEEEECCcCC
Confidence 44443322 15678999999977654 1246788999999999963
No 139
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.39 E-value=6.7e-07 Score=117.47 Aligned_cols=125 Identities=18% Similarity=0.121 Sum_probs=87.7
Q ss_pred CCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCC---CcEEEEecccHHHHHHHHHHHHHHhCCCCCC
Q psy1907 669 LPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKD---KMKIGCTQPRRVAAMSVSARVAEEMGVKLGC 745 (1320)
Q Consensus 669 LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~---~~~I~~tQPRRvAA~svA~rva~e~~~~lG~ 745 (1320)
....++..+.+.++.+++.+||.++||||||.+.-..+++.-.... ++++++.-|++..+...+.++..-.. ..|-
T Consensus 247 ~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~-~~~~ 325 (936)
T 4a2w_A 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE-RQGY 325 (936)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH-TTTC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc-ccCc
Confidence 3456778889999988999999999999999887666655432222 45799999999888887776655431 1133
Q ss_pred eeeEEeecCccC------CCCccEEEEccHHHHHHHhcCC--CCCCccEEEEccccc
Q psy1907 746 EVGYAIRFEDCT------SERTIIKYMTDGTLHREFLSEP--DLASYSVMIIDEAHP 794 (1320)
Q Consensus 746 ~VGY~irfe~~~------s~~T~i~y~TdG~Llrel~~dp--~L~~ys~iIiDE~HE 794 (1320)
.|+.-....... ..+..|+++|.|+|++.+.... .+.++++|||||||.
T Consensus 326 ~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~ 382 (936)
T 4a2w_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHN 382 (936)
T ss_dssp CEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGG
T ss_pred eEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccc
Confidence 333222211111 1246799999999999988765 478899999999996
No 140
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=98.36 E-value=1.8e-07 Score=106.93 Aligned_cols=88 Identities=17% Similarity=0.209 Sum_probs=70.8
Q ss_pred ecHhhHHHHhcccCCcc-CCeEEEecchHHh-------------hhhccCCCchhhhccChHHHHHHHHHcCCCCcccc-
Q psy1907 823 ISKASANQRAGRAGRVA-AGKCFRLYTAWAY-------------KHELEDNTVPEIQRINLGNAVLMLKALGINDLIHF- 887 (1320)
Q Consensus 823 iSkasa~QR~GRAGR~~-pG~cyrLyt~~~~-------------~~~l~~~~~PEI~R~~L~~~vL~lk~lgi~d~~~f- 887 (1320)
.|.++..||+|||||.+ +|.||.+|+.... ...++..+.|||++.++..+++.++.++.+++..|
T Consensus 107 ~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~ 186 (300)
T 3i32_A 107 DRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQ 186 (300)
T ss_dssp SSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTH
T ss_pred CCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 46789999999999995 9999999997651 12366678899999999999999998887777777
Q ss_pred ----cCCCCCChHHHHHHHHHHHHccc
Q psy1907 888 ----DFLDPPPHETLVLALEQLYALGA 910 (1320)
Q Consensus 888 ----~fldpP~~~~l~~Ale~L~~LgA 910 (1320)
+|+++|+.+.+..|+..|+....
T Consensus 187 ~~~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 187 DFAGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 67888999999999999976654
No 141
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.08 E-value=3e-06 Score=92.24 Aligned_cols=71 Identities=24% Similarity=0.361 Sum_probs=56.0
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH--HHH-HhhcCCC
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA--QKF-SEFFDDA 72 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~--~~f-~~~f~~~ 72 (1320)
+|||+|++.+..+.. ++++++||+|||| +.++.++...+.+.+...+++.|+++||||++. ..+ ..|+.++
T Consensus 149 ~Tp~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p 223 (228)
T 3iuy_A 149 ATPGRLNDLQMNNSVNLRSITYLVIDEAD-KMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDP 223 (228)
T ss_dssp ECHHHHHHHHHTTCCCCTTCCEEEECCHH-HHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSC
T ss_pred ECHHHHHHHHHcCCcCcccceEEEEECHH-HHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCC
Confidence 599999998887766 8999999999998 566667777777777677888999999999965 334 4455544
No 142
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.06 E-value=3e-06 Score=91.72 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=57.4
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH---HHHHhhcCCCCEEE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA---QKFSEFFDDAPVFR 76 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~---~~f~~~f~~~~vi~ 76 (1320)
+|||+|++.+..... ++++++||+|||| +..+.++...+.+.+...+++.|+++||||++. +.+..|++++..+.
T Consensus 137 ~Tp~~l~~~~~~~~~~~~~~~~iViDEah-~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~ 215 (224)
T 1qde_A 137 GTPGRVFDNIQRRRFRTDKIKMFILDEAD-EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRIL 215 (224)
T ss_dssp ECHHHHHHHHHTTSSCCTTCCEEEEETHH-HHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC
T ss_pred ECHHHHHHHHHhCCcchhhCcEEEEcChh-HHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEE
Confidence 599999999877655 8999999999999 455556665555555556778999999999965 33556777666666
Q ss_pred eCCccc
Q psy1907 77 IPGRRF 82 (1320)
Q Consensus 77 i~g~~~ 82 (1320)
+.+...
T Consensus 216 ~~~~~~ 221 (224)
T 1qde_A 216 VKKDEL 221 (224)
T ss_dssp ------
T ss_pred ecCCcc
Confidence 655443
No 143
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.01 E-value=4.3e-06 Score=92.10 Aligned_cols=77 Identities=25% Similarity=0.279 Sum_probs=59.0
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH--HHH-HhhcCCCCEEE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA--QKF-SEFFDDAPVFR 76 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~--~~f-~~~f~~~~vi~ 76 (1320)
+|||+|++.+..... ++++++||||||| +.++.++...+.+.+...+++.|+++||||++. ..+ ..|+.++..+.
T Consensus 158 ~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~ 236 (242)
T 3fe2_A 158 ATPGRLIDFLECGKTNLRRTTYLVLDEAD-RMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHIN 236 (242)
T ss_dssp ECHHHHHHHHHHTSCCCTTCCEEEETTHH-HHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEE
T ss_pred ECHHHHHHHHHcCCCCcccccEEEEeCHH-HHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEE
Confidence 499999999876664 8999999999998 566667777777766677788999999999965 344 44665555555
Q ss_pred eC
Q psy1907 77 IP 78 (1320)
Q Consensus 77 i~ 78 (1320)
+.
T Consensus 237 ~~ 238 (242)
T 3fe2_A 237 IG 238 (242)
T ss_dssp EC
T ss_pred ec
Confidence 54
No 144
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.96 E-value=5.6e-06 Score=91.85 Aligned_cols=76 Identities=24% Similarity=0.284 Sum_probs=58.4
Q ss_pred CCHHHHHHHHcCCC--CCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH--HHH-HhhcCCCCEE
Q psy1907 1 MTDGTLHREFLSEP--DLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA--QKF-SEFFDDAPVF 75 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~--~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~--~~f-~~~f~~~~vi 75 (1320)
+|||+|++.+...+ .++++++||+|||| +.++.++...+.+.+...+++.|+++||||++. ..+ ..|+.++..+
T Consensus 167 ~Tp~~l~~~l~~~~~~~l~~~~~lViDEah-~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i 245 (249)
T 3ber_A 167 ATPGRLIDHLENTKGFNLRALKYLVMDEAD-RILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKC 245 (249)
T ss_dssp ECHHHHHHHHHHSTTCCCTTCCEEEECSHH-HHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEE
T ss_pred ECHHHHHHHHHcCCCcCccccCEEEEcChh-hhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEE
Confidence 59999999987543 48999999999998 677778877777777777778999999999965 333 4466555444
Q ss_pred Ee
Q psy1907 76 RI 77 (1320)
Q Consensus 76 ~i 77 (1320)
.+
T Consensus 246 ~v 247 (249)
T 3ber_A 246 AV 247 (249)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 145
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.93 E-value=6.1e-06 Score=102.92 Aligned_cols=118 Identities=19% Similarity=0.128 Sum_probs=64.2
Q ss_pred ChhhHHHHHHHHHh-----CCEEEEEcCCCCchhcHHHHHH---HHccCCC----CCcEEEEecccHHHHHHHHHHHHHH
Q psy1907 671 IYPFKQDLIDAVRD-----HQVLIIEGETGSGKTTQIPQYL---HEAGFTK----DKMKIGCTQPRRVAAMSVSARVAEE 738 (1320)
Q Consensus 671 i~~~~~~il~~i~~-----~~v~ii~geTGsGKTTqvPq~l---~e~~~~~----~~~~I~~tQPRRvAA~svA~rva~e 738 (1320)
...+..+.++.+.+ ++-++|+++||||||.+.-.++ +..++.. .+++|++.-|++.-+.......
T Consensus 179 lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~--- 255 (590)
T 3h1t_A 179 PRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT--- 255 (590)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C---
T ss_pred chHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH---
Confidence 34445555554433 4668999999999999865544 3444321 3457899999987665555222
Q ss_pred hCCCCCCeeeEEeecCccCCCCccEEEEccHHHHHHHh-----cCCCCCCccEEEEccccc
Q psy1907 739 MGVKLGCEVGYAIRFEDCTSERTIIKYMTDGTLHREFL-----SEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 739 ~~~~lG~~VGY~irfe~~~s~~T~i~y~TdG~Llrel~-----~dp~L~~ys~iIiDE~HE 794 (1320)
-...|..++.-. ......+..|+++|.+.|.+.+. ..-....+++|||||||.
T Consensus 256 -~~~~~~~~~~~~--~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~ 313 (590)
T 3h1t_A 256 -FTPFGDARHKIE--GGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHR 313 (590)
T ss_dssp -CTTTCSSEEECC--C--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-
T ss_pred -HHhcchhhhhhh--ccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcc
Confidence 224454443211 22334567899999999887643 223456799999999994
No 146
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.92 E-value=8e-06 Score=87.04 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=53.8
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH--HHHH-hhcCCCCEEE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA--QKFS-EFFDDAPVFR 76 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~--~~f~-~~f~~~~vi~ 76 (1320)
+|||+|++.+..... ++++++||+||||. ..+.++...+.+.+...+++.|+++||||++. +.+. .|++++.++.
T Consensus 126 ~T~~~l~~~~~~~~~~~~~~~~iViDEah~-~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 204 (207)
T 2gxq_A 126 ATPGRALDYLRQGVLDLSRVEVAVLDEADE-MLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLIN 204 (207)
T ss_dssp ECHHHHHHHHHHTSSCCTTCSEEEEESHHH-HHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEE
T ss_pred ECHHHHHHHHHcCCcchhhceEEEEEChhH-hhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEE
Confidence 599999998876544 89999999999993 44555555555555556778999999999964 3444 4665554444
No 147
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.92 E-value=7.7e-06 Score=88.45 Aligned_cols=76 Identities=17% Similarity=0.314 Sum_probs=55.3
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH---HHHHhhcCCCCEEE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA---QKFSEFFDDAPVFR 76 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~---~~f~~~f~~~~vi~ 76 (1320)
+|||+|++.+..... ++++++||+|||| +..+.++...+.+.+...+++.|+++||||++. +.+..|+.++..+.
T Consensus 132 ~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~ 210 (219)
T 1q0u_A 132 GTPGRINDFIREQALDVHTAHILVVDEAD-LMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVH 210 (219)
T ss_dssp ECHHHHHHHHHTTCCCGGGCCEEEECSHH-HHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEE
T ss_pred eCHHHHHHHHHcCCCCcCcceEEEEcCch-HHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEE
Confidence 599999998877654 8999999999999 444555555555555556678999999999954 33455776654444
Q ss_pred e
Q psy1907 77 I 77 (1320)
Q Consensus 77 i 77 (1320)
+
T Consensus 211 ~ 211 (219)
T 1q0u_A 211 V 211 (219)
T ss_dssp C
T ss_pred e
Confidence 3
No 148
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=97.91 E-value=7.9e-06 Score=93.37 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=54.3
Q ss_pred CCHHHHHHHHcCCCC--CCCccEEEEeCCCccCcC-cchHHHHHHHHhhcCCCCcEEEEecCcCH--HHHHh-hcCCCCE
Q psy1907 1 MTDGTLHREFLSEPD--LASYSVMIIDEAHERTLH-TDILFGLVKDIVRFRSDLKLLISSATLDA--QKFSE-FFDDAPV 74 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~--Ls~~s~iVLDEaHeR~l~-td~ll~llk~l~~~r~~~qlIl~SATl~~--~~f~~-~f~~~~v 74 (1320)
+|||+|++.+...+. ++++++||||||| +.++ .++...+...+...+++.|+|+||||++. ..|++ |+.++.+
T Consensus 216 ~TP~~l~~~l~~~~~~~l~~l~~lVlDEad-~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~ 294 (300)
T 3fmo_B 216 GTPGTVLDWCSKLKFIDPKKIKVFVLDEAD-VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNV 294 (300)
T ss_dssp ECHHHHHHHHTTTCCCCGGGCSEEEETTHH-HHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEE
T ss_pred ECHHHHHHHHHhcCCCChhhceEEEEeCHH-HHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeE
Confidence 499999999976443 8999999999998 4454 34444444444456778999999999954 44444 5655555
Q ss_pred EEe
Q psy1907 75 FRI 77 (1320)
Q Consensus 75 i~i 77 (1320)
+.+
T Consensus 295 i~~ 297 (300)
T 3fmo_B 295 IKL 297 (300)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 149
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.90 E-value=8.6e-06 Score=89.41 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=54.4
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH--HH-HHhhcCCCCEEE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA--QK-FSEFFDDAPVFR 76 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~--~~-f~~~f~~~~vi~ 76 (1320)
+|||+|++.+..... ++++++||+|||| +.++.++...+.+.+...+++.|+|+||||++. .. +..|+.++..+.
T Consensus 155 ~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~ 233 (237)
T 3bor_A 155 GTPGRVFDMLNRRYLSPKWIKMFVLDEAD-EMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRIL 233 (237)
T ss_dssp ECHHHHHHHHHTTSSCSTTCCEEEEESHH-HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC
T ss_pred ECHHHHHHHHHhCCcCcccCcEEEECCch-HhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEE
Confidence 499999999877654 8899999999998 445555555555555556778999999999965 33 445665544443
No 150
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.89 E-value=9.1e-06 Score=88.86 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=58.0
Q ss_pred CCHHHHHHHHcCC--CCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH--HHHHh-hcCCCCEE
Q psy1907 1 MTDGTLHREFLSE--PDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA--QKFSE-FFDDAPVF 75 (1320)
Q Consensus 1 ~T~G~LLr~l~~d--~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~--~~f~~-~f~~~~vi 75 (1320)
+|||+|++.+... ..+.++++||+|||| +.++.++...+.+.+...+++.|+++||||++. ..+.+ |+.++..+
T Consensus 152 ~Tp~~l~~~l~~~~~~~~~~~~~lViDEah-~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i 230 (236)
T 2pl3_A 152 CTPGRLLQHMDETVSFHATDLQMLVLDEAD-RILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYV 230 (236)
T ss_dssp ECHHHHHHHHHHCSSCCCTTCCEEEETTHH-HHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEE
T ss_pred ECHHHHHHHHHhcCCcccccccEEEEeChH-HHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEE
Confidence 4999999988765 347899999999999 566666666666666667778999999999965 34444 55566566
Q ss_pred EeCC
Q psy1907 76 RIPG 79 (1320)
Q Consensus 76 ~i~g 79 (1320)
.+.+
T Consensus 231 ~~~~ 234 (236)
T 2pl3_A 231 WVHE 234 (236)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 5544
No 151
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.87 E-value=1.5e-05 Score=85.05 Aligned_cols=71 Identities=20% Similarity=0.292 Sum_probs=52.2
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH--HH-HHhhcCCC
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA--QK-FSEFFDDA 72 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~--~~-f~~~f~~~ 72 (1320)
+|||+|++.+..... ++++++||+||||. ..+.++...+.+.+...+++.|+++||||++. .. +..|++++
T Consensus 128 ~T~~~l~~~~~~~~~~~~~~~~lViDEah~-~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p 202 (206)
T 1vec_A 128 ATPGRILDLIKKGVAKVDHVQMIVLDEADK-LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKP 202 (206)
T ss_dssp ECHHHHHHHHHTTCSCCTTCCEEEEETHHH-HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSC
T ss_pred eCHHHHHHHHHcCCcCcccCCEEEEEChHH-hHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCC
Confidence 599999999887654 89999999999994 45556655555555556668999999999965 33 44466443
No 152
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.86 E-value=9.5e-06 Score=88.58 Aligned_cols=75 Identities=17% Similarity=0.187 Sum_probs=53.4
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcc-hHHHHHHHHhhcCCCCcEEEEecCcCHH---HHHhhcCCCCEE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTD-ILFGLVKDIVRFRSDLKLLISSATLDAQ---KFSEFFDDAPVF 75 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td-~ll~llk~l~~~r~~~qlIl~SATl~~~---~f~~~f~~~~vi 75 (1320)
+|||+|++.+..+.. ++++++||+|||| +.++.+ +...+.+.+...+++.|+++||||++.+ .+..||+++..+
T Consensus 148 ~Tp~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i 226 (230)
T 2oxc_A 148 GSPGRIKQLIELDYLNPGSIRLFILDEAD-KLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFV 226 (230)
T ss_dssp ECHHHHHHHHHTTSSCGGGCCEEEESSHH-HHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEE
T ss_pred ECHHHHHHHHhcCCcccccCCEEEeCCch-HhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEE
Confidence 499999998876654 8899999999999 445544 4444444444466688999999999653 355577655444
Q ss_pred E
Q psy1907 76 R 76 (1320)
Q Consensus 76 ~ 76 (1320)
.
T Consensus 227 ~ 227 (230)
T 2oxc_A 227 R 227 (230)
T ss_dssp C
T ss_pred E
Confidence 3
No 153
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.82 E-value=1.4e-05 Score=89.42 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=55.8
Q ss_pred CCHHHHHHHHcCCC--CCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcCH--HHHHh-hcCCCCE
Q psy1907 1 MTDGTLHREFLSEP--DLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLDA--QKFSE-FFDDAPV 74 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~--~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~~--~~f~~-~f~~~~v 74 (1320)
+|||+|++.+...+ .++++++||||||| +.++.++...+.+.+...+++.|+|+||||++. ..+.+ ++.+.++
T Consensus 182 ~Tp~~l~~~~~~~~~~~~~~l~~lViDEah-~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~~ 259 (262)
T 3ly5_A 182 ATPGRLLDHMQNTPGFMYKNLQCLVIDEAD-RILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPL 259 (262)
T ss_dssp ECHHHHHHHHHHCTTCCCTTCCEEEECSHH-HHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCCE
T ss_pred EcHHHHHHHHHccCCcccccCCEEEEcChH-HHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCCe
Confidence 59999999987765 48999999999998 566667776666666667778999999999964 44554 5544443
No 154
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.74 E-value=2.9e-05 Score=85.31 Aligned_cols=78 Identities=21% Similarity=0.234 Sum_probs=54.5
Q ss_pred CCHHHHHHHHcCCC---CCCCccEEEEeCCCccCcC---cchHHHHHHHHhhc-CCCCcEEEEecCcCH--HHH-HhhcC
Q psy1907 1 MTDGTLHREFLSEP---DLASYSVMIIDEAHERTLH---TDILFGLVKDIVRF-RSDLKLLISSATLDA--QKF-SEFFD 70 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~---~Ls~~s~iVLDEaHeR~l~---td~ll~llk~l~~~-r~~~qlIl~SATl~~--~~f-~~~f~ 70 (1320)
+|||+|++.+..++ .++++++|||||||. .++ .++...+.+.+... .++.|+++||||++. ..+ ..|++
T Consensus 155 ~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~ 233 (245)
T 3dkp_A 155 TTPNRLIYLLKQDPPGIDLASVEWLVVDESDK-LFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLD 233 (245)
T ss_dssp ECHHHHHHHHHSSSCSCCCTTCCEEEESSHHH-HHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSS
T ss_pred ECHHHHHHHHHhCCCCcccccCcEEEEeChHH-hcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCC
Confidence 49999999997764 389999999999994 333 45555555554443 457899999999954 334 44666
Q ss_pred CCCEEEeCC
Q psy1907 71 DAPVFRIPG 79 (1320)
Q Consensus 71 ~~~vi~i~g 79 (1320)
++..+.+.+
T Consensus 234 ~p~~i~~~~ 242 (245)
T 3dkp_A 234 NVISVSIGA 242 (245)
T ss_dssp SCEEEEECC
T ss_pred CCEEEEeCC
Confidence 665566544
No 155
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.72 E-value=1.3e-05 Score=99.15 Aligned_cols=132 Identities=10% Similarity=0.064 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEE
Q psy1907 98 DACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVL 177 (1320)
Q Consensus 98 ~~~i~~v~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlv 177 (1320)
+.....+..+... .+|.+|||+||....+.+++.+.. .. +..++.. ..+..+++.|+.+. .|++
T Consensus 370 ~~~~~~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~-----------~~-~~~q~~~--~~~~~~l~~f~~~~-~il~ 433 (540)
T 2vl7_A 370 PIYSILLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG-----------IP-VIEENKK--TRHEEVLELMKTGK-YLVM 433 (540)
T ss_dssp HHHHHHHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT-----------SC-EEESTTT--CCHHHHHHHHHTSC-CEEE
T ss_pred HHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc-----------Cc-eEecCCC--CcHHHHHHHHhcCC-eEEE
Confidence 4555556666554 478899999999999988876642 12 2345543 34556666665543 4666
Q ss_pred --eCcccccCCCCCC----ccEEEcCCCCccccccCCC-------------CccccceeccCHhhHHHHhhhcCCCCCCC
Q psy1907 178 --ATNIAETSLTIDN----IIYVIDPGFCKQNNFNSRT-------------GMESLTVVPISKASANQRAGVITGFNPLS 238 (1320)
Q Consensus 178 --ATdIAe~gldIp~----I~~VID~g~~k~~~yd~~~-------------g~~~l~~~piSk~s~~QR~GRAGR~g~g~ 238 (1320)
+|+....|||+|| +++||..|+|....-|+.. +...+. .|...-...|-+||+-|....
T Consensus 434 ~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Q~~GR~iR~~~D- 511 (540)
T 2vl7_A 434 LVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSII-HDLTAIVIKQTIGRAFRDPND- 511 (540)
T ss_dssp EEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHHHHHHHHCCSTTC-
T ss_pred EEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHH-HHHHHHHHHHHhCCcccCCCc-
Confidence 8999999999998 8999999998655433321 111111 122256788999999998665
Q ss_pred CceEEEEecCH
Q psy1907 239 DFRGCAHVLGE 249 (1320)
Q Consensus 239 ~fg~~~~L~~~ 249 (1320)
+|..+ +.+.
T Consensus 512 -~g~v~-llD~ 520 (540)
T 2vl7_A 512 -YVKIY-LCDS 520 (540)
T ss_dssp -CCEEE-EESG
T ss_pred -cEEEE-EEcc
Confidence 35444 4443
No 156
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.69 E-value=3.9e-05 Score=82.80 Aligned_cols=74 Identities=19% Similarity=0.194 Sum_probs=51.5
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcC-cchHHHHHHHHhhcCCCCcEEEEecCcCH--HHH-HhhcCCCCEE
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLH-TDILFGLVKDIVRFRSDLKLLISSATLDA--QKF-SEFFDDAPVF 75 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~-td~ll~llk~l~~~r~~~qlIl~SATl~~--~~f-~~~f~~~~vi 75 (1320)
+|||+|++.+..... ++++++||+||||. .++ .++...+.+.+...+++.|+++||||++. +.+ ..|+.++..+
T Consensus 140 ~T~~~l~~~~~~~~~~~~~~~~lViDEah~-~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i 218 (220)
T 1t6n_A 140 GTPGRILALARNKSLNLKHIKHFILDECDK-MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 218 (220)
T ss_dssp ECHHHHHHHHHTTSSCCTTCCEEEEESHHH-HHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEE
T ss_pred eCHHHHHHHHHhCCCCcccCCEEEEcCHHH-HhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEE
Confidence 599999998877654 89999999999994 333 34443343444445668999999999943 444 4566655444
No 157
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.64 E-value=4.3e-05 Score=84.47 Aligned_cols=77 Identities=25% Similarity=0.246 Sum_probs=52.9
Q ss_pred CCHHHHHHHHcCCCC-CCCccEEEEeCCCccCcCcchHHHHHHHHhh--cCC--CCcEEEEecCcCH--HHH-HhhcCCC
Q psy1907 1 MTDGTLHREFLSEPD-LASYSVMIIDEAHERTLHTDILFGLVKDIVR--FRS--DLKLLISSATLDA--QKF-SEFFDDA 72 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~-Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~--~r~--~~qlIl~SATl~~--~~f-~~~f~~~ 72 (1320)
+|||+|++.+..... ++++++||+|||| +.++.++...+.+.+.. .++ +.|+++||||++. ..+ ..|+.++
T Consensus 156 ~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~ 234 (253)
T 1wrb_A 156 ATPGRLVDFIEKNKISLEFCKYIVLDEAD-RMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNY 234 (253)
T ss_dssp ECHHHHHHHHHTTSBCCTTCCEEEEETHH-HHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSC
T ss_pred ECHHHHHHHHHcCCCChhhCCEEEEeCHH-HHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCC
Confidence 599999999887664 8999999999998 34555554444444432 233 6899999999965 344 4466555
Q ss_pred CEEEeC
Q psy1907 73 PVFRIP 78 (1320)
Q Consensus 73 ~vi~i~ 78 (1320)
..+.+.
T Consensus 235 ~~i~~~ 240 (253)
T 1wrb_A 235 IFMTVG 240 (253)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 445443
No 158
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.40 E-value=0.0061 Score=77.57 Aligned_cols=78 Identities=24% Similarity=0.287 Sum_probs=56.7
Q ss_pred CcEEEEecCc--CHHHHHhhcCCCCEEEeCCcccce------eEEEEcCCccchHHHHHHHHHHHHhhCCCCCEEEEcCC
Q psy1907 51 LKLLISSATL--DAQKFSEFFDDAPVFRIPGRRFPV------DIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTG 122 (1320)
Q Consensus 51 ~qlIl~SATl--~~~~f~~~f~~~~vi~i~g~~~pV------~~~y~~~~~~~~l~~~i~~v~~i~~~~~~g~iLVFl~t 122 (1320)
-++-.|+.|. ..+.|.+.+ +..++.||.. .|+ ...| .....+..+.+..+...|... ..|||++.|
T Consensus 379 ~kLsGMTGTA~tE~~Ef~~iY-~l~Vv~IPTn-~p~~R~D~~d~vy--~t~~~K~~AIv~eI~~~~~~G--qPVLVgT~S 452 (997)
T 2ipc_A 379 EKRAGMTGTAKTEEKEFQEIY-GMDVVVVPTN-RPVIRKDFPDVVY--RTEKGKFYAVVEEIAEKYERG--QPVLVGTIS 452 (997)
T ss_dssp SEEEEEESSCGGGHHHHHHHH-CCCEEECCCS-SCCCCEEEEEEEE--SSHHHHHHHHHHHHHHHHHHT--CCEEEECSS
T ss_pred hHheecCCCchHHHHHHHHHh-CCCEEEcCCC-CCcccccCCCeEE--cCHHHHHHHHHHHHHHHHHCC--CCEEEEeCC
Confidence 3688899999 446677777 4668888763 332 1223 234567778787788777663 569999999
Q ss_pred HHHHHHHHHHHH
Q psy1907 123 QEEIETCNEILQ 134 (1320)
Q Consensus 123 ~~eie~l~~~L~ 134 (1320)
.+..|.++.+|.
T Consensus 453 Ie~SE~LS~~L~ 464 (997)
T 2ipc_A 453 IEKSERLSQMLK 464 (997)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999998
No 159
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.24 E-value=0.00052 Score=84.93 Aligned_cols=111 Identities=17% Similarity=0.137 Sum_probs=67.7
Q ss_pred HHHHHHHHhCCEEEEEcCCCCchhcH--HHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeee-----
Q psy1907 676 QDLIDAVRDHQVLIIEGETGSGKTTQ--IPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVG----- 748 (1320)
Q Consensus 676 ~~il~~i~~~~v~ii~geTGsGKTTq--vPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VG----- 748 (1320)
+.+.+++.+++.+++.++||+|||.- +|... .+.+|++.-|.|.-+..++ +....+....|-.+.
T Consensus 13 ~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-------~~~~v~i~~pt~~l~~q~~-~~~~~l~~~~~~~~~~l~gr 84 (551)
T 3crv_A 13 DKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-------VKPKVLFVVRTHNEFYPIY-RDLTKIREKRNITFSFLVGK 84 (551)
T ss_dssp HHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-------HCSEEEEEESSGGGHHHHH-HHHTTCCCSSCCCEEECCCH
T ss_pred HHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-------CCCeEEEEcCCHHHHHHHH-HHHHHHhhhcCccEEEEccc
Confidence 35666778899999999999999854 35433 2335777777766665555 333333222222221
Q ss_pred --EEee----------------cCccC----------------------------------CCCccEEEEccHHHHHHHh
Q psy1907 749 --YAIR----------------FEDCT----------------------------------SERTIIKYMTDGTLHREFL 776 (1320)
Q Consensus 749 --Y~ir----------------fe~~~----------------------------------s~~T~i~y~TdG~Llrel~ 776 (1320)
|.+. +-... .....|+++|.+.|+....
T Consensus 85 ~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~ 164 (551)
T 3crv_A 85 PSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRY 164 (551)
T ss_dssp HHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHH
T ss_pred cccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHH
Confidence 1000 00000 1245799999999998765
Q ss_pred cCC--CCCCccEEEEccccc
Q psy1907 777 SEP--DLASYSVMIIDEAHP 794 (1320)
Q Consensus 777 ~dp--~L~~ys~iIiDE~HE 794 (1320)
.+. .+.+.++|||||||.
T Consensus 165 ~~~~~~~~~~~~vIiDEAHn 184 (551)
T 3crv_A 165 REFIDIDLREYMIVIDEAHN 184 (551)
T ss_dssp HTTSCCCSTTEEEEETTGGG
T ss_pred HHhcCCCcCCeEEEEecccc
Confidence 442 235789999999995
No 160
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.13 E-value=0.00028 Score=88.99 Aligned_cols=63 Identities=29% Similarity=0.469 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHH
Q psy1907 673 PFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAE 737 (1320)
Q Consensus 673 ~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~ 737 (1320)
.+++.|..++..+.+.+|.||+|+||||-|-..+...- ..+.+|+++=|--.||-.+++|++.
T Consensus 193 ~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~--~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 193 SQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAV--KQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp HHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEcCchHHHHHHHHHHHh
Confidence 34667888888889999999999999999887766532 2345799999999999999999975
No 161
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=97.11 E-value=0.00043 Score=84.20 Aligned_cols=118 Identities=15% Similarity=0.096 Sum_probs=66.9
Q ss_pred ChhhHHHHHHHH----HhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCe
Q psy1907 671 IYPFKQDLIDAV----RDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCE 746 (1320)
Q Consensus 671 i~~~~~~il~~i----~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~ 746 (1320)
.+++..+.++.+ ..+.-+||..+||+|||-|.--++.+..-....+++++.-|..+. ...+..+.+ ... +..
T Consensus 38 L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~-~qw~~e~~~-~~~--~~~ 113 (500)
T 1z63_A 38 LRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVL-KNWEEELSK-FAP--HLR 113 (500)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTH-HHHHHHHHH-HCT--TSC
T ss_pred chHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHHHH-HHHHHHHHH-HCC--Cce
Confidence 344555554444 567788999999999999875555432211222356777787654 223333322 221 122
Q ss_pred eeEEeecCc-cCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEccccc
Q psy1907 747 VGYAIRFED-CTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 747 VGY~irfe~-~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HE 794 (1320)
|+.-....+ ....+..|+++|.++|.+... -....+++||+||||.
T Consensus 114 v~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~--l~~~~~~~vIvDEaH~ 160 (500)
T 1z63_A 114 FAVFHEDRSKIKLEDYDIILTTYAVLLRDTR--LKEVEWKYIVIDEAQN 160 (500)
T ss_dssp EEECSSSTTSCCGGGSSEEEEEHHHHTTCHH--HHTCCEEEEEEETGGG
T ss_pred EEEEecCchhccccCCcEEEeeHHHHhccch--hcCCCcCEEEEeCccc
Confidence 321111111 111245799999999987643 1234789999999994
No 162
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=97.10 E-value=0.00024 Score=93.58 Aligned_cols=106 Identities=18% Similarity=0.015 Sum_probs=66.0
Q ss_pred CEEEEEcCCCCchhcHHHHHHHHccC-CCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeec--CccCCCCcc
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHEAGF-TKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRF--EDCTSERTI 762 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e~~~-~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irf--e~~~s~~T~ 762 (1320)
.-.+|..+||||||-.. -++...-. .....+|++.-||+.-+..++..+..-....++. |.+..- .........
T Consensus 301 ~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~~v~~--~~s~~~l~~~L~~~~~~ 377 (1038)
T 2w00_A 301 SGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKEYQRFSPDSVNG--SENTAGLKRNLDKDDNK 377 (1038)
T ss_dssp GSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHHHTTSTTCSSS--SCCCHHHHHHHHCSSCC
T ss_pred CCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHHHHhccccccc--ccCHHHHHHHhcCCCCC
Confidence 56889999999999876 22322111 1123479999999988877766554311111110 111100 000124578
Q ss_pred EEEEccHHHHHHHhcC---CCCCCccEEEEccccc
Q psy1907 763 IKYMTDGTLHREFLSE---PDLASYSVMIIDEAHP 794 (1320)
Q Consensus 763 i~y~TdG~Llrel~~d---p~L~~ys~iIiDE~HE 794 (1320)
|+++|-+.|...+... +.+..+.+||+||||.
T Consensus 378 IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHr 412 (1038)
T 2w00_A 378 IIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHR 412 (1038)
T ss_dssp EEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCT
T ss_pred EEEEEHHHHHHHHhcccchhccccccEEEEEccch
Confidence 9999999998866543 3567889999999995
No 163
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.07 E-value=0.00077 Score=73.58 Aligned_cols=90 Identities=18% Similarity=0.204 Sum_probs=53.4
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccCCCCcc
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSERTI 762 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~s~~T~ 762 (1320)
....+++++|++||||||.+-|.+..... .|.++++.||-.=. | +. ..+-...|. .++ .
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~--~g~kVli~~~~~d~------r-~~---~~i~srlG~--~~~-------~ 68 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEY--ADVKYLVFKPKIDT------R-SI---RNIQSRTGT--SLP-------S 68 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHH--TTCCEEEEEECCCG------G-GC---SSCCCCCCC--SSC-------C
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEEeccCc------h-HH---HHHHHhcCC--Ccc-------c
Confidence 34678999999999999999999876532 24467888873210 1 00 011111221 111 1
Q ss_pred EEEEccHHHHHHHhcCCCCCCccEEEEcccc
Q psy1907 763 IKYMTDGTLHREFLSEPDLASYSVMIIDEAH 793 (1320)
Q Consensus 763 i~y~TdG~Llrel~~dp~L~~ys~iIiDE~H 793 (1320)
+.+.+..-++..+...-.-..|++|||||++
T Consensus 69 ~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ 99 (223)
T 2b8t_A 69 VEVESAPEILNYIMSNSFNDETKVIGIDEVQ 99 (223)
T ss_dssp EEESSTHHHHHHHHSTTSCTTCCEEEECSGG
T ss_pred cccCCHHHHHHHHHHHhhCCCCCEEEEecCc
Confidence 2234444566666554444569999999996
No 164
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.99 E-value=0.0012 Score=82.78 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=42.9
Q ss_pred hHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHH--ccCCCCCcEEEEecccHHHHHHHHHHHH
Q psy1907 674 FKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHE--AGFTKDKMKIGCTQPRRVAAMSVSARVA 736 (1320)
Q Consensus 674 ~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e--~~~~~~~~~I~~tQPRRvAA~svA~rva 736 (1320)
++..+ ..+..+++++|+|+|||||||.+-..+.. ......+.+|+++-|-+.||..+++.+.
T Consensus 154 Q~~Ai-~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~ 217 (608)
T 1w36_D 154 QKVAA-AVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLG 217 (608)
T ss_dssp HHHHH-HHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHT
T ss_pred HHHHH-HHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHH
Confidence 33444 44457899999999999999987544321 1111234479999999999988777654
No 165
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.88 E-value=0.0011 Score=82.41 Aligned_cols=59 Identities=20% Similarity=0.382 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHH
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARV 735 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rv 735 (1320)
..+.+..+..+++++|+|++|+||||.+-..+... ...+.+|+++-|-..||..+++++
T Consensus 194 Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l--~~~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 194 QASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLA--ESLGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp HHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHH--HHTTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHH--HhcCCeEEEecCcHHHHHHhHhhh
Confidence 34556666688999999999999999886655322 113346888889888886665543
No 166
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.81 E-value=0.0018 Score=78.21 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=40.2
Q ss_pred HHHHHHhCC-EEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHH
Q psy1907 678 LIDAVRDHQ-VLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARV 735 (1320)
Q Consensus 678 il~~i~~~~-v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rv 735 (1320)
+++.+.+++ +++|.|++||||||.+-..+....- .+...|+++-|-..||..+.+++
T Consensus 37 ~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~-~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 37 VMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIS-TGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp HHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCceEEEecCcHHHHHHHHhhh
Confidence 344455445 9999999999999998665533211 11125888999999988877776
No 167
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=96.75 E-value=0.0021 Score=79.25 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=34.9
Q ss_pred HHHHHHHhCCEEEEEcCCCCchhcH--HHHHHHHccCCCCCcEEEEecccHHHHHHHHHH
Q psy1907 677 DLIDAVRDHQVLIIEGETGSGKTTQ--IPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSAR 734 (1320)
Q Consensus 677 ~il~~i~~~~v~ii~geTGsGKTTq--vPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~r 734 (1320)
.+..++.+++.+++.++||+|||.- +|.... +.+|++.-|.+--+..+.+.
T Consensus 18 ~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-------~~~~~~~~~t~~l~~q~~~~ 70 (540)
T 2vl7_A 18 EAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-------KKKVLIFTRTHSQLDSIYKN 70 (540)
T ss_dssp HHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-------TCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-------CCcEEEEcCCHHHHHHHHHH
Confidence 4567788999999999999999942 343211 23577777776666555543
No 168
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=96.71 E-value=0.0015 Score=86.05 Aligned_cols=123 Identities=13% Similarity=0.132 Sum_probs=69.5
Q ss_pred ChhhHHHHHHHHHh--CCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeee
Q psy1907 671 IYPFKQDLIDAVRD--HQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVG 748 (1320)
Q Consensus 671 i~~~~~~il~~i~~--~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VG 748 (1320)
.+++..+.+..+.. +..+||.++||+|||-+.=.++.+.-..+..+++++.-|+ ..+..-+..+.+-.|.+++.--|
T Consensus 154 LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~~~ 232 (968)
T 3dmq_A 154 LIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALFDD 232 (968)
T ss_dssp CCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEECCH
T ss_pred CcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEEcc
Confidence 45566666655544 4588999999999998875555443222223368999998 33344444444444333211000
Q ss_pred EEe----ecCccCCCCccEEEEccHHHHHHHhcC--CCCCCccEEEEccccc
Q psy1907 749 YAI----RFEDCTSERTIIKYMTDGTLHREFLSE--PDLASYSVMIIDEAHP 794 (1320)
Q Consensus 749 Y~i----rfe~~~s~~T~i~y~TdG~Llrel~~d--p~L~~ys~iIiDE~HE 794 (1320)
-.. +-....-....|+++|.++|.+....- -...+++.|||||+|.
T Consensus 233 ~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~ 284 (968)
T 3dmq_A 233 ERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHH 284 (968)
T ss_dssp HHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSC
T ss_pred chhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHh
Confidence 000 000111234679999999886531110 0234799999999994
No 169
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.50 E-value=0.0054 Score=77.00 Aligned_cols=59 Identities=15% Similarity=0.307 Sum_probs=44.9
Q ss_pred HHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHH
Q psy1907 678 LIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAE 737 (1320)
Q Consensus 678 il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~ 737 (1320)
.+..+..+++++|.|++|+||||.+-..+.... ...+.+|+++-|...||-.+.+|+.+
T Consensus 188 av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~-~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 188 AVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLA-RQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp HHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHH-TSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHH-HcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 344444688999999999999998876654321 11345799999999999999999864
No 170
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.0053 Score=79.10 Aligned_cols=60 Identities=22% Similarity=0.338 Sum_probs=45.1
Q ss_pred HHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHH
Q psy1907 677 DLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAE 737 (1320)
Q Consensus 677 ~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~ 737 (1320)
+.+..+..+++++|.|++|+||||.+-..+...- ...+.+|+++-|...||-.+++|+.+
T Consensus 367 ~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~-~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 367 NAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLS-KIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp HHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHH-HHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHH-hCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 3444455688999999999999998766553211 00234699999999999999999975
No 171
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.25 E-value=0.003 Score=66.79 Aligned_cols=38 Identities=26% Similarity=0.440 Sum_probs=29.4
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEeccc
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPR 724 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPR 724 (1320)
..+.+++|++||||||.+=+.+..... .+.++++.+|.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~--~g~~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL--GKKKVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH--TTCEEEEEEEC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeec
Confidence 578999999999999999887765421 23468888886
No 172
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.05 E-value=0.011 Score=76.29 Aligned_cols=59 Identities=15% Similarity=0.307 Sum_probs=44.8
Q ss_pred HHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHH
Q psy1907 678 LIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAE 737 (1320)
Q Consensus 678 il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~ 737 (1320)
.+..+..+++++|.|++|+||||.+-..+...- ...+.+|+++-|...||-.+++|+..
T Consensus 364 Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~-~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 364 AVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLA-RQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp HHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHH-TTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred HHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHH-HcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 344444678999999999999998876654321 11345799999999999999999864
No 173
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.90 E-value=0.0065 Score=64.67 Aligned_cols=39 Identities=28% Similarity=0.318 Sum_probs=31.0
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEeccc
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPR 724 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPR 724 (1320)
..++.+++|+.||||||.+=+.+.... ..|+++++.+|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~--~~g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAK--IAKQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEec
Confidence 346899999999999999988877643 234578888885
No 174
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=95.78 E-value=0.0065 Score=77.35 Aligned_cols=107 Identities=23% Similarity=0.301 Sum_probs=64.4
Q ss_pred HHHhCCEEEEEcCCCCchhcH--HHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccC-
Q psy1907 681 AVRDHQVLIIEGETGSGKTTQ--IPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCT- 757 (1320)
Q Consensus 681 ~i~~~~v~ii~geTGsGKTTq--vPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~- 757 (1320)
.+.+++ |..+.||||||-- +|-|+.. ..+. .+.|.-|-|--|..+|+.+.. ++..+|-.||.-+..-+..
T Consensus 94 ~ll~G~--Iaea~TGeGKTlaf~LP~~l~a--L~g~--~vlVltptreLA~qd~e~~~~-l~~~lgl~v~~i~gg~~~~~ 166 (844)
T 1tf5_A 94 ALHDGN--IAEMKTGEGKTLTSTLPVYLNA--LTGK--GVHVVTVNEYLASRDAEQMGK-IFEFLGLTVGLNLNSMSKDE 166 (844)
T ss_dssp HHHTTS--EEECCTTSCHHHHHHHHHHHHH--TTSS--CEEEEESSHHHHHHHHHHHHH-HHHHTTCCEEECCTTSCHHH
T ss_pred HHhCCC--EEEccCCcHHHHHHHHHHHHHH--HcCC--CEEEEeCCHHHHHHHHHHHHH-HHhhcCCeEEEEeCCCCHHH
Confidence 444566 8899999999965 5766532 2222 355555766655544443322 1233456666544332111
Q ss_pred ---CCCccEEEEccHHH-----HHHHh---cCCCCCCccEEEEccccc
Q psy1907 758 ---SERTIIKYMTDGTL-----HREFL---SEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 758 ---s~~T~i~y~TdG~L-----lrel~---~dp~L~~ys~iIiDE~HE 794 (1320)
.....|+|.|.|=| ...+. .+-.+.++.++|||||+.
T Consensus 167 r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~ 214 (844)
T 1tf5_A 167 KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDS 214 (844)
T ss_dssp HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHH
T ss_pred HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhh
Confidence 01357999999988 33332 234688999999999985
No 175
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=95.68 E-value=0.0054 Score=78.17 Aligned_cols=100 Identities=22% Similarity=0.253 Sum_probs=62.4
Q ss_pred EEEcCCCCchhcH--HHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccC----CCCcc
Q psy1907 689 IIEGETGSGKTTQ--IPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCT----SERTI 762 (1320)
Q Consensus 689 ii~geTGsGKTTq--vPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~----s~~T~ 762 (1320)
|....||+|||.- +|-|+.- ..+ ..+.|.-|-|--|...|+.+.. ++..+|-.||.-+..-+.. .....
T Consensus 128 Iaem~TGeGKTLa~~LP~~l~a--L~g--~~v~VvTpTreLA~Qdae~m~~-l~~~lGLsv~~i~gg~~~~~r~~~y~~D 202 (922)
T 1nkt_A 128 VAEMKTGEGKTLTCVLPAYLNA--LAG--NGVHIVTVNDYLAKRDSEWMGR-VHRFLGLQVGVILATMTPDERRVAYNAD 202 (922)
T ss_dssp EEECCTTSCHHHHTHHHHHHHH--TTT--SCEEEEESSHHHHHHHHHHHHH-HHHHTTCCEEECCTTCCHHHHHHHHHSS
T ss_pred EEEecCCCccHHHHHHHHHHHH--HhC--CCeEEEeCCHHHHHHHHHHHHH-HHhhcCCeEEEEeCCCCHHHHHHhcCCC
Confidence 9999999999975 5776532 222 2366666766655544443322 1234566666544332110 01357
Q ss_pred EEEEccHHH----HHHHh----cCCCCCCccEEEEcccc
Q psy1907 763 IKYMTDGTL----HREFL----SEPDLASYSVMIIDEAH 793 (1320)
Q Consensus 763 i~y~TdG~L----lrel~----~dp~L~~ys~iIiDE~H 793 (1320)
|+|.|.|-| ||.-+ .+-.+.++.++||||||
T Consensus 203 IvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaD 241 (922)
T 1nkt_A 203 ITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVD 241 (922)
T ss_dssp EEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHH
T ss_pred EEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChH
Confidence 999999998 44433 24567899999999999
No 176
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.61 E-value=0.014 Score=61.67 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=19.0
Q ss_pred CEEEEEcCCCCchhcHHHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
..++|.|++|+||||.+-.+..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999987655443
No 177
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=95.56 E-value=0.014 Score=73.38 Aligned_cols=109 Identities=18% Similarity=0.140 Sum_probs=60.5
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHH---ccCCC--CCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEe--e---
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHE---AGFTK--DKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAI--R--- 752 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e---~~~~~--~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~i--r--- 752 (1320)
..+.-.||.-+||+|||-|+--++.. .+-.. ..+++++.-|.-+.. .-+..+..-.+..+ ..+.|.- +
T Consensus 77 ~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~-qW~~E~~~~~~~~~-~~~~~~~g~~~~~ 154 (644)
T 1z3i_X 77 ENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVR-NWYNEVGKWLGGRV-QPVAIDGGSKDEI 154 (644)
T ss_dssp TTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHH-HHHHHHHHHHGGGC-CEEEECSSCHHHH
T ss_pred cCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHH-HHHHHHHHHcCCCe-eEEEEeCCCHHHH
Confidence 35567899999999999998766643 22111 123577777864332 22222222222111 1122110 0
Q ss_pred ------cCc--cCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEccccc
Q psy1907 753 ------FED--CTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 753 ------fe~--~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HE 794 (1320)
+-. .....+.|+++|.+++.+.. ..-.-..+++||+||+|.
T Consensus 155 ~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~-~~l~~~~~~~vI~DEaH~ 203 (644)
T 1z3i_X 155 DSKLVNFISQQGMRIPTPILIISYETFRLHA-EVLHKGKVGLVICDEGHR 203 (644)
T ss_dssp HHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT-TTTTTSCCCEEEETTGGG
T ss_pred HHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH-HHhhcCCccEEEEECcee
Confidence 000 01124679999999988753 111235789999999994
No 178
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=95.49 E-value=0.021 Score=72.87 Aligned_cols=105 Identities=22% Similarity=0.224 Sum_probs=66.2
Q ss_pred HHhCCEEEEEcCCCCchhcH--HHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccC--
Q psy1907 682 VRDHQVLIIEGETGSGKTTQ--IPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCT-- 757 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTq--vPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~-- 757 (1320)
+.+++ |....||||||.- +|-|+.- .. |..+.|.-|-|.-|...+.-+..- ...+|-.||.-+..-+..
T Consensus 91 LlqG~--IaeakTGeGKTLvf~Lp~~L~a--L~--G~qv~VvTPTreLA~Qdae~m~~l-~~~lGLsv~~i~Gg~~~~~r 163 (997)
T 2ipc_A 91 LHEGK--IAEMKTGEGKTLVATLAVALNA--LT--GKGVHVVTVNDYLARRDAEWMGPV-YRGLGLSVGVIQHASTPAER 163 (997)
T ss_dssp HHTTS--EEECCSTHHHHHHHHHHHHHHH--TT--CSCCEEEESSHHHHHHHHHHHHHH-HHTTTCCEEECCTTCCHHHH
T ss_pred ccCCc--eeeccCCCchHHHHHHHHHHHH--Hh--CCCEEEEeCCHHHHHHHHHHHHHH-HHhcCCeEEEEeCCCCHHHH
Confidence 34555 8899999999975 4665432 22 223667778777666665544332 345666777655432210
Q ss_pred --CCCccEEEEccHHH-H---HHHh----cCCCCC---CccEEEEcccc
Q psy1907 758 --SERTIIKYMTDGTL-H---REFL----SEPDLA---SYSVMIIDEAH 793 (1320)
Q Consensus 758 --s~~T~i~y~TdG~L-l---rel~----~dp~L~---~ys~iIiDE~H 793 (1320)
.....|+|.|.|-| + |.-+ .+..+. +..++||||||
T Consensus 164 ~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaD 212 (997)
T 2ipc_A 164 RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVD 212 (997)
T ss_dssp HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHH
T ss_pred HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechH
Confidence 11357999999998 3 3322 123577 89999999998
No 179
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=95.47 E-value=0.0073 Score=76.78 Aligned_cols=106 Identities=22% Similarity=0.235 Sum_probs=64.3
Q ss_pred HHhCCEEEEEcCCCCchhcH--HHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccC--
Q psy1907 682 VRDHQVLIIEGETGSGKTTQ--IPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCT-- 757 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTq--vPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~-- 757 (1320)
+.+++ |....||||||.- +|.++.- .. |..+.|.-|-|.-|..+++-+.. ++..+|-.||.-+...+..
T Consensus 86 ll~G~--Iaem~TGsGKTlaf~LP~l~~~--l~--g~~vlVltPTreLA~Q~~e~~~~-l~~~lgl~v~~i~GG~~~~~r 158 (853)
T 2fsf_A 86 LNERC--IAEMRTGEGKTLTATLPAYLNA--LT--GKGVHVVTVNDYLAQRDAENNRP-LFEFLGLTVGINLPGMPAPAK 158 (853)
T ss_dssp HHSSE--EEECCTTSCHHHHHHHHHHHHH--TT--SSCCEEEESSHHHHHHHHHHHHH-HHHHTTCCEEECCTTCCHHHH
T ss_pred ccCCe--eeeecCCchHHHHHHHHHHHHH--Hc--CCcEEEEcCCHHHHHHHHHHHHH-HHHhcCCeEEEEeCCCCHHHH
Confidence 34444 8999999999975 4665432 22 22356666888777666554322 1223455555433322110
Q ss_pred --CCCccEEEEccHHH----HHHHh----cCCCCCCccEEEEccccc
Q psy1907 758 --SERTIIKYMTDGTL----HREFL----SEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 758 --s~~T~i~y~TdG~L----lrel~----~dp~L~~ys~iIiDE~HE 794 (1320)
.....|+|.|.|-| ||.-+ .+-.+.+..++||||||.
T Consensus 159 ~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~ 205 (853)
T 2fsf_A 159 REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDS 205 (853)
T ss_dssp HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHH
T ss_pred HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHH
Confidence 11357999999998 34322 234678999999999994
No 180
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.45 E-value=0.028 Score=59.79 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=25.9
Q ss_pred HHHHHHHHhCC---EEEEEcCCCCchhcHHHHHHHHc
Q psy1907 676 QDLIDAVRDHQ---VLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 676 ~~il~~i~~~~---v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
+.|.+++..+. +++|.|++|+||||.+=.+..+.
T Consensus 33 ~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 33 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp HHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45566666655 89999999999999987665443
No 181
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=95.42 E-value=0.024 Score=71.02 Aligned_cols=179 Identities=16% Similarity=0.205 Sum_probs=100.2
Q ss_pred CcEEEEecCc-CHHHHHhhcCCC-CEEEeCCcccc---eeEEEEcCC-------ccchHHHHHHHHHHHHhhCCCCCEEE
Q psy1907 51 LKLLISSATL-DAQKFSEFFDDA-PVFRIPGRRFP---VDIYYTKAP-------EADYIDACVVSILQIHATQPLGDILV 118 (1320)
Q Consensus 51 ~qlIl~SATl-~~~~f~~~f~~~-~vi~i~g~~~p---V~~~y~~~~-------~~~~l~~~i~~v~~i~~~~~~g~iLV 118 (1320)
..+|++|||+ +.+.|.+-+|-. ..+.+ +..|+ ..+++.... ...+.+.....+..+.... +|.+||
T Consensus 376 ~~~il~SaTL~p~~~~~~~lGl~~~~~~~-~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~-~g~~lv 453 (620)
T 4a15_A 376 SKTIHMSGTLDPFDFYSDITGFEIPFKKI-GEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKV-KKNTIV 453 (620)
T ss_dssp SEEEEEESSCCSHHHHHHHHCCCCCEEEC-CCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHH-CSCEEE
T ss_pred CeEEEEccCCCcHHHHHHHhCCCceeeec-CCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhC-CCCEEE
Confidence 4689999999 546666655432 22222 22222 122222211 1233455556666665544 688999
Q ss_pred EcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeCc--ccccCCCCCC--ccEE
Q psy1907 119 FLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATN--IAETSLTIDN--IIYV 194 (1320)
Q Consensus 119 Fl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvATd--IAe~gldIp~--I~~V 194 (1320)
|+||....+.+++.+. . .+.. ..-++....+..+++.|. +.-.|+++|. ...-|||++| .+.|
T Consensus 454 lF~Sy~~l~~v~~~l~-~--------~~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~v 520 (620)
T 4a15_A 454 YFPSYSLMDRVENRVS-F--------EHMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMI 520 (620)
T ss_dssp EESCHHHHHHHTSSCC-S--------CCEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEE
T ss_pred EeCCHHHHHHHHHHHH-h--------cchh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEE
Confidence 9999999988877664 1 1122 444555566777888887 7788999974 7888999975 6678
Q ss_pred EcCCCCccccccCC-------------CCccccceeccCHhhHHHHhhhcCCCCCCCCceEEEEecCH
Q psy1907 195 IDPGFCKQNNFNSR-------------TGMESLTVVPISKASANQRAGVITGFNPLSDFRGCAHVLGE 249 (1320)
Q Consensus 195 ID~g~~k~~~yd~~-------------~g~~~l~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~L~~~ 249 (1320)
|=.|+|-... ||. .|.......| ..-...|=+||+=|.... +|..+ +.+.
T Consensus 521 iI~~lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D--~G~v~-llD~ 583 (620)
T 4a15_A 521 ILAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAED--TGACV-ILDK 583 (620)
T ss_dssp EESSCCCCCC-CHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTC--CEEEE-EECG
T ss_pred EEEcCCCCCC-CHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCc--eEEEE-EEcc
Confidence 8778765432 221 1110001123 345678999999997765 35444 4444
No 182
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.36 E-value=0.029 Score=59.99 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchhcHHHHHHHHc
Q psy1907 687 VLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
+.+|+|++||||||..-.++.+.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 68899999999999987776654
No 183
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.018 Score=74.46 Aligned_cols=120 Identities=14% Similarity=0.068 Sum_probs=66.8
Q ss_pred CChhhHHHHHHHH----HhCCEEEEEcCCCCchhcHHHHHHHHccC-CCCCcEEEEecccHHHHHHHHHHHHHHhCCCCC
Q psy1907 670 PIYPFKQDLIDAV----RDHQVLIIEGETGSGKTTQIPQYLHEAGF-TKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLG 744 (1320)
Q Consensus 670 Pi~~~~~~il~~i----~~~~v~ii~geTGsGKTTqvPq~l~e~~~-~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG 744 (1320)
...++..+-++.+ .++.-.||..+||+|||-|.=-++...-. ...++.+++.-|..+..- -...+..-. . +
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~q-W~~E~~~~~-p--~ 311 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPA-WLDTFEKWA-P--D 311 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHH-HHHHHHHHS-T--T
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHH-HHHHHHHHC-C--C
Confidence 3455666666544 47888999999999999987665543210 111224666668655322 222222211 1 1
Q ss_pred CeeeEEeecC------------------ccCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEccccc
Q psy1907 745 CEVGYAIRFE------------------DCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 745 ~~VGY~irfe------------------~~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~HE 794 (1320)
-.|..-..-. .....+..|+++|.+++.+.... -.-..+++|||||||.
T Consensus 312 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~-l~~~~w~~vIvDEaH~ 378 (800)
T 3mwy_W 312 LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE-LGSIKWQFMAVDEAHR 378 (800)
T ss_dssp CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH-HHTSEEEEEEETTGGG
T ss_pred ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH-HhcCCcceeehhhhhh
Confidence 1222111000 01223567999999999875321 0123689999999994
No 184
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.10 E-value=0.062 Score=62.06 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=24.3
Q ss_pred HHHHHHHHhCC---EEEEEcCCCCchhcHHHHHHHH
Q psy1907 676 QDLIDAVRDHQ---VLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 676 ~~il~~i~~~~---v~ii~geTGsGKTTqvPq~l~e 708 (1320)
+.+..++..++ .++|.|++|+||||.+=.+...
T Consensus 26 ~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp HHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34555666655 5899999999999998655443
No 185
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.99 E-value=0.022 Score=65.13 Aligned_cols=57 Identities=21% Similarity=0.221 Sum_probs=36.5
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhC
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMG 740 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~ 740 (1320)
...++.|+|++||||||.+-.+.....-.++...++-+-++|.++..-....++..|
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~g 159 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVG 159 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcC
Confidence 456899999999999999876643321111222344567888887654444555444
No 186
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.91 E-value=0.04 Score=57.12 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.6
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
.+++++|.|++||||||.+=.+..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876643
No 187
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.91 E-value=0.021 Score=61.30 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=20.2
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
..+.++|.|++||||||.+=.+..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999987655433
No 188
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=94.86 E-value=0.28 Score=60.44 Aligned_cols=175 Identities=11% Similarity=0.050 Sum_probs=104.2
Q ss_pred CcEEEEecCcC-HHHHHhhcCCC-CEE----Ee-CCcccce-eEEEEcC--Cc------cchHHHHHHHHHHHHhhCCCC
Q psy1907 51 LKLLISSATLD-AQKFSEFFDDA-PVF----RI-PGRRFPV-DIYYTKA--PE------ADYIDACVVSILQIHATQPLG 114 (1320)
Q Consensus 51 ~qlIl~SATl~-~~~f~~~f~~~-~vi----~i-~g~~~pV-~~~y~~~--~~------~~~l~~~i~~v~~i~~~~~~g 114 (1320)
..+|++|||+. .+.|.+-++-. +.. .. -+..++- ...|... |. .++.+.....+..+.... +|
T Consensus 316 ~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~-~g 394 (551)
T 3crv_A 316 LSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQA-KA 394 (551)
T ss_dssp CEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHC-SS
T ss_pred ceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcCCCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhC-CC
Confidence 57899999994 46677766533 332 00 1222211 1123221 11 234566677777776554 68
Q ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCCCHHHHHHHcCCCCCCCeEEEEeC--cccccCCCCC---
Q psy1907 115 DILVFLTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLAT--NIAETSLTID--- 189 (1320)
Q Consensus 115 ~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~LH~~l~~~~r~~i~~~~~~g~~kVlvAT--dIAe~gldIp--- 189 (1320)
.+|||+|+....+.+++. .+..++.=..+++..+..+.|+ ..+ .-|++|| .-..-|||+|
T Consensus 395 ~~lvlF~Sy~~l~~v~~~------------~~~~v~~q~~~~~~~~~~~~~~--~~~-~~vl~~v~gg~~~EGiD~~d~~ 459 (551)
T 3crv_A 395 NVLVVFPSYEIMDRVMSR------------ISLPKYVESEDSSVEDLYSAIS--ANN-KVLIGSVGKGKLAEGIELRNND 459 (551)
T ss_dssp EEEEEESCHHHHHHHHTT------------CCSSEEECCSSCCHHHHHHHTT--SSS-SCEEEEESSCCSCCSSCCEETT
T ss_pred CEEEEecCHHHHHHHHHh------------cCCcEEEcCCCCCHHHHHHHHH--hcC-CeEEEEEecceecccccccccC
Confidence 899999999998887751 1223332223567666666665 223 3799998 5788899999
Q ss_pred C--ccEEEcCCCCccccccCC-----------CCcccc---ceeccCHhhHHHHhhhcCCCCCCCCceEEEE
Q psy1907 190 N--IIYVIDPGFCKQNNFNSR-----------TGMESL---TVVPISKASANQRAGVITGFNPLSDFRGCAH 245 (1320)
Q Consensus 190 ~--I~~VID~g~~k~~~yd~~-----------~g~~~l---~~~piSk~s~~QR~GRAGR~g~g~~fg~~~~ 245 (1320)
| .+.||=.|+|-... ||. .|.... -..| ..-...|=+||+=|.... +|..+.
T Consensus 460 g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D--~G~v~l 527 (551)
T 3crv_A 460 RSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVND--KCNVWL 527 (551)
T ss_dssp EESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTC--EEEEEE
T ss_pred CcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCc--cEEEEE
Confidence 3 77888778766544 432 122111 2233 556677899999888765 354443
No 189
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.84 E-value=0.035 Score=64.45 Aligned_cols=55 Identities=11% Similarity=0.069 Sum_probs=31.2
Q ss_pred EEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCC
Q psy1907 687 VLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGV 741 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~ 741 (1320)
.++|+|++|+||||.+=.+.-+..-..+..-+.+..........+...++..+|.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~ 100 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNI 100 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCc
Confidence 8999999999999999766544321111112333322222234455556665543
No 190
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.80 E-value=0.033 Score=66.49 Aligned_cols=57 Identities=23% Similarity=0.228 Sum_probs=40.8
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCC
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGV 741 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~ 741 (1320)
..+++++|++||||||.+-.+.....-.+..-.++.+.+.|.+|..-....++..|.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv 153 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGV 153 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCC
Confidence 468999999999999998766543221112224567889999998877777776654
No 191
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.71 E-value=0.035 Score=58.42 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=23.6
Q ss_pred HHHHHHHHHhC--CEEEEEcCCCCchhcHHHHHHH
Q psy1907 675 KQDLIDAVRDH--QVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 675 ~~~il~~i~~~--~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
.+.+.+.+..+ ..++|.|++|+||||.+-.+..
T Consensus 26 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 26 IQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp HHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34555566554 3499999999999998765543
No 192
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.68 E-value=0.035 Score=62.39 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCCchhcHHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
...++|.||+||||||.+-.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 57899999999999987755443
No 193
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.67 E-value=0.015 Score=59.18 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=19.8
Q ss_pred hCCEEEEEcCCCCchhcHHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
.+++++|.|++||||||.+--+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~ 57 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWV 57 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 67899999999999999886544
No 194
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.64 E-value=0.1 Score=60.09 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=24.0
Q ss_pred HHHHHHHHhCC---EEEEEcCCCCchhcHHHHHH
Q psy1907 676 QDLIDAVRDHQ---VLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 676 ~~il~~i~~~~---v~ii~geTGsGKTTqvPq~l 706 (1320)
+.|..++++++ .+++.|++|+||||.+=.+.
T Consensus 12 ~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la 45 (334)
T 1a5t_A 12 EKLVASYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_dssp HHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHHcCCcceeEEEECCCCchHHHHHHHHH
Confidence 45667777765 59999999999998775544
No 195
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.62 E-value=0.019 Score=68.59 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=40.1
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCC
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGV 741 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~ 741 (1320)
..|++++|.+||||||.+-.+.....-.+....++.+-|.|.+|..--...++..|.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gv 156 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHI 156 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCC
Confidence 469999999999999998766543221112224577889999998777777665554
No 196
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.62 E-value=0.033 Score=63.79 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=17.2
Q ss_pred CEEEEEcCCCCchhcHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l 706 (1320)
..++|.||+|+||||.+=.+.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia 76 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIIS 76 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 478999999999998775543
No 197
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.44 E-value=0.034 Score=64.38 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=20.7
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
....++|.|++|+||||.+=.+..+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999998766544
No 198
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.43 E-value=0.056 Score=62.72 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
.+.++|.|++|+||||.+=.+..+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999998655443
No 199
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.40 E-value=0.05 Score=62.74 Aligned_cols=30 Identities=37% Similarity=0.490 Sum_probs=24.1
Q ss_pred HHHHHHHhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 677 DLIDAVRDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 677 ~il~~i~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
.+--.+..+.+++|+|+|||||||.+--.+
T Consensus 163 ~l~~~i~~g~~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 163 AIKDGIAIGKNVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp HHHHHHHHTCCEEEEESTTSCHHHHHHHGG
T ss_pred hhhhhccCCCEEEEECCCCCCHHHHHHHHh
Confidence 334466889999999999999999886543
No 200
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.22 E-value=0.065 Score=58.47 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=31.7
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEeccc
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPR 724 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPR 724 (1320)
..++.+++|+-||||||.+=+.++.+.. .|+++++.||.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~--~g~kvli~kp~ 56 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI--AQYKCLVIKYA 56 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT--TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH--CCCeEEEEeec
Confidence 4679999999999999999888876532 35578998986
No 201
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.20 E-value=0.074 Score=60.66 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=18.4
Q ss_pred CCEEEEEcCCCCchhcHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l 706 (1320)
++.++|.|+||+|||+.+-.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia 173 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMA 173 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 6899999999999998775443
No 202
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=94.10 E-value=0.014 Score=65.32 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=35.8
Q ss_pred CCHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCc
Q psy1907 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL 60 (1320)
Q Consensus 1 ~T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl 60 (1320)
+|+|.+.+.. ...+.++++|||||||.-. . . .+.+.+...++..+++++|||+
T Consensus 210 ~T~~~l~~~~--~~~~~~~~~vIiDEaH~~~-~-~---~~~~il~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 210 GTWQTVVKQP--KEWFSQFGMMMNDECHLAT-G-K---SISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp ECHHHHTTSC--GGGGGGEEEEEEETGGGCC-H-H---HHHHHTTTCTTCCEEEEECSSC
T ss_pred EchHHHHhhH--HHHHhhCCEEEEECCccCC-c-c---cHHHHHHHhhcCCeEEEEeCCC
Confidence 4788765431 2347899999999999432 1 1 2333333455688999999999
No 203
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.05 E-value=0.03 Score=66.84 Aligned_cols=47 Identities=28% Similarity=0.396 Sum_probs=37.0
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVA 736 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva 736 (1320)
.+..+.+|.|.+||||||.|-+.+. . +++++.=|++-||..+-+++.
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~---~----~~~lVlTpT~~aa~~l~~kl~ 205 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN---F----EEDLILVPGRQAAEMIRRRAN 205 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC---T----TTCEEEESCHHHHHHHHHHHT
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc---c----CCeEEEeCCHHHHHHHHHHhh
Confidence 3567999999999999999976542 1 246778899999988888874
No 204
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=93.88 E-value=0.25 Score=61.43 Aligned_cols=115 Identities=13% Similarity=0.208 Sum_probs=74.7
Q ss_pred CCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCC---CCC
Q psy1907 669 LPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVK---LGC 745 (1320)
Q Consensus 669 LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~---lG~ 745 (1320)
+...++...|+..+..++.++|.++-|+||||.+-.+++.......+.+|+|+.|.+--|..+..++....... +..
T Consensus 162 ~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~~ 241 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQP 241 (592)
T ss_dssp CCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTSC
T ss_pred CcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChHhhcc
Confidence 45577788899888778999999999999999987765543333445589999999999888887776554321 121
Q ss_pred ee----eEEeecCccCCCCccEEEEcc-HHHHHHHhcCCCCCCccEEEEccccc
Q psy1907 746 EV----GYAIRFEDCTSERTIIKYMTD-GTLHREFLSEPDLASYSVMIIDEAHP 794 (1320)
Q Consensus 746 ~V----GY~irfe~~~s~~T~i~y~Td-G~Llrel~~dp~L~~ys~iIiDE~HE 794 (1320)
.+ ...|.|. ...+|.+.+. .--+|-+ +.+++|+||+|+
T Consensus 242 ~~~~~~~~~i~~~----nGs~i~~~s~~~~~lrG~-------~~~~~iiDE~~~ 284 (592)
T 3cpe_A 242 GIVEWNKGSIELD----NGSSIGAYASSPDAVRGN-------SFAMIYIEDCAF 284 (592)
T ss_dssp CEEEECSSEEEET----TSCEEEEEECCHHHHHHS-------CCSEEEEETGGG
T ss_pred ccccCCccEEEec----CCCEEEEEeCCCCCccCC-------CcceEEEehhcc
Confidence 11 1123331 2234444432 2222221 478999999985
No 205
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.85 E-value=0.039 Score=61.49 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=19.0
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
.....++|.|++|+||||.+-.+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la 72 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVA 72 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHH
Confidence 356789999999999998775443
No 206
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.72 E-value=0.13 Score=58.58 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=20.9
Q ss_pred HHHHHHHHhC---CEEEEEcCCCCchhcHHHHH
Q psy1907 676 QDLIDAVRDH---QVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 676 ~~il~~i~~~---~v~ii~geTGsGKTTqvPq~ 705 (1320)
..|.+++..+ .++++.||+|+||||.+=.+
T Consensus 36 ~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~l 68 (324)
T 3u61_B 36 ETFKSITSKGKIPHIILHSPSPGTGKTTVAKAL 68 (324)
T ss_dssp HHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHH
Confidence 4455555544 46788888999999876544
No 207
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.65 E-value=0.024 Score=68.11 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=21.8
Q ss_pred HHHHHHHhCCE--EEEEcCCCCchhcHHHHH
Q psy1907 677 DLIDAVRDHQV--LIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 677 ~il~~i~~~~v--~ii~geTGsGKTTqvPq~ 705 (1320)
.+..+|+.+++ ++|.||+|+||||.+=.+
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr~i 70 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVI 70 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHHHHH
Confidence 34566666664 999999999999876433
No 208
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.64 E-value=0.075 Score=59.57 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=17.1
Q ss_pred CCEEEEEcCCCCchhcHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~ 705 (1320)
...++|.||+|+||||.+-.+
T Consensus 50 ~~~vll~G~~GtGKT~la~~l 70 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRL 70 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 567899999999999776544
No 209
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.62 E-value=0.12 Score=58.61 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=17.6
Q ss_pred CCEEEEEcCCCCchhcHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l 706 (1320)
...++|.||+|+||||.+=.+.
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~ 59 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIA 59 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 3678999999999998765443
No 210
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.60 E-value=0.09 Score=59.41 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=17.3
Q ss_pred CEEEEEcCCCCchhcHHHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
..++|.||||+|||+..-....+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999766544333
No 211
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.52 E-value=0.021 Score=60.82 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=29.5
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEeccc
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPR 724 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPR 724 (1320)
..++.+|.|+.||||||.+=|.+...... +++|++.-|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~--~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEccc
Confidence 35789999999999999998887654332 3457776676
No 212
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.50 E-value=0.036 Score=64.03 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
.+.++|.|++|+||||.+=.+.-+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999776544
No 213
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.49 E-value=0.079 Score=57.99 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=18.1
Q ss_pred hCCEEEEEcCCCCchhcHHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
....++|.||+|+||||.+-.+.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la 60 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVA 60 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 45678999999999998765443
No 214
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.48 E-value=0.053 Score=58.56 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=30.5
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRR 725 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRR 725 (1320)
.++.+++|+-||||||.+=+.+..+. ..|+++++.||..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~--~~g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ--FAKQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEecc
Confidence 46889999999999999988877653 2345789999863
No 215
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.36 E-value=0.05 Score=63.97 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=17.8
Q ss_pred CCEEEEEcCCCCchhcHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l 706 (1320)
...++|.|++|+|||+.+=.+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia 169 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVA 169 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4689999999999997765443
No 216
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.25 E-value=0.067 Score=61.17 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=18.6
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
...++|.||+|||||+.+-.+..+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999877554433
No 217
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.25 E-value=0.066 Score=62.26 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=19.8
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
....++|.||+||||||.+=.+..+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999887655444
No 218
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.20 E-value=0.052 Score=61.65 Aligned_cols=57 Identities=26% Similarity=0.336 Sum_probs=35.2
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHHccCCCC-CcEEEEecccHHHHHHHHHHHHHHhC
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHEAGFTKD-KMKIGCTQPRRVAAMSVSARVAEEMG 740 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~-~~~I~~tQPRRvAA~svA~rva~e~~ 740 (1320)
...+++|+|++||||||.+-.+........+ ...++-.-|.|.+|...-...++.+|
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~g 161 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQ 161 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcC
Confidence 4679999999999999999776533221112 12234456778777644444444333
No 219
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.19 E-value=0.13 Score=59.00 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
...++|.||+||||||.+-.+..+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 367999999999999877555444
No 220
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.09 E-value=0.11 Score=58.44 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.9
Q ss_pred CEEEEEcCCCCchhcHHH
Q psy1907 686 QVLIIEGETGSGKTTQIP 703 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvP 703 (1320)
..++|.|++|+||||.+=
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999998875
No 221
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.02 E-value=0.048 Score=58.88 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=29.4
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEeccc
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPR 724 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPR 724 (1320)
....+.+|+|+-||||||.+=+.+..... .++++++.+|.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~--~g~kvli~kp~ 65 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIY--AKQKVVVFKPA 65 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH--cCCceEEEEec
Confidence 45689999999999999977665554322 24568999985
No 222
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.96 E-value=0.067 Score=57.54 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
...+++.|..+.++.|+|+.||||||.+-..
T Consensus 12 ~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l 42 (208)
T 3b85_A 12 QKHYVDAIDTNTIVFGLGPAGSGKTYLAMAK 42 (208)
T ss_dssp HHHHHHHHHHCSEEEEECCTTSSTTHHHHHH
T ss_pred HHHHHHhccCCCEEEEECCCCCCHHHHHHHH
Confidence 3467888999999999999999999998654
No 223
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.90 E-value=0.093 Score=59.49 Aligned_cols=57 Identities=23% Similarity=0.225 Sum_probs=34.7
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhC
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMG 740 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~ 740 (1320)
...++.|+|++||||||.+-.........++.-.++-.-++|.++..--..++++.|
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~ 153 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVG 153 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCC
Confidence 457889999999999999876543221111222344466788777643333455544
No 224
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.86 E-value=0.086 Score=60.10 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
.+.++|.||+|+||||.+-.+..+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999998766543
No 225
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.85 E-value=0.069 Score=59.28 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=17.3
Q ss_pred CEEEEEcCCCCchhcHHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
..++|.||+|+||||.+=.+..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4789999999999987654433
No 226
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.80 E-value=0.017 Score=61.79 Aligned_cols=32 Identities=25% Similarity=0.487 Sum_probs=26.0
Q ss_pred HHHH-HHHhCCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 677 DLID-AVRDHQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 677 ~il~-~i~~~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
+++. .+..+.+++|.|++||||||.+=+++..
T Consensus 14 ~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 14 KLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp GGGTTSEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3443 5677899999999999999999888743
No 227
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.79 E-value=0.078 Score=61.66 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
...++|.||+||||||.+-.+..+.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3468899999999998876555444
No 228
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.72 E-value=0.15 Score=58.48 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=24.9
Q ss_pred HHHHHHHHhCCE--EEEEcCCCCchhcHHHHHH
Q psy1907 676 QDLIDAVRDHQV--LIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 676 ~~il~~i~~~~v--~ii~geTGsGKTTqvPq~l 706 (1320)
+.|..+++++++ +++.||+|+||||.+=.+.
T Consensus 35 ~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la 67 (340)
T 1sxj_C 35 TTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALA 67 (340)
T ss_dssp HHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHH
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHH
Confidence 456667778877 9999999999999886554
No 229
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.70 E-value=0.32 Score=55.01 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=21.1
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
.....++|.||+||||||.+=.+..+.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456789999999999998876554443
No 230
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=92.62 E-value=0.33 Score=50.84 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=25.6
Q ss_pred EecHhhHHHHhcccCCcc-CCeEEEecchHH
Q psy1907 822 PISKASANQRAGRAGRVA-AGKCFRLYTAWA 851 (1320)
Q Consensus 822 ~iSkasa~QR~GRAGR~~-pG~cyrLyt~~~ 851 (1320)
|.|..+..||.|||||.+ +|.|+.+++...
T Consensus 124 p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 154 (185)
T 2jgn_A 124 PSDIEEYVHRIGRTGRVGNLGLATSFFNERN 154 (185)
T ss_dssp CSSHHHHHHHHTTBCCTTSCEEEEEEECGGG
T ss_pred CCCHHHHHHHccccCCCCCCcEEEEEEchhh
Confidence 346788999999999986 899999999754
No 231
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.42 E-value=0.24 Score=60.54 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
.+.++|+||+|+||||.+=.+..+.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3789999999999998876655554
No 232
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.27 E-value=0.49 Score=58.97 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
.+.+..++..+..++|.||+||||||.+=.+.
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia 81 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMA 81 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHHHHh
Confidence 35677788899999999999999999885543
No 233
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.22 E-value=0.17 Score=55.77 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=21.4
Q ss_pred HHHhCCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 681 AVRDHQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 681 ~i~~~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
+...+..++|.||||+|||+.. +.|+...
T Consensus 25 ~~~~~~~vll~G~~GtGKt~la-~~i~~~~ 53 (265)
T 2bjv_A 25 LAPLDKPVLIIGERGTGKELIA-SRLHYLS 53 (265)
T ss_dssp HTTSCSCEEEECCTTSCHHHHH-HHHHHTS
T ss_pred HhCCCCCEEEECCCCCcHHHHH-HHHHHhc
Confidence 3445678999999999999765 5555543
No 234
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.18 E-value=0.2 Score=58.37 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=16.8
Q ss_pred CCEEEEEcCCCCchhcHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~ 705 (1320)
...++|.|+||+||||..-.+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~l 92 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTL 92 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHH
Confidence 457999999999999766433
No 235
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.16 E-value=0.21 Score=54.81 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=17.6
Q ss_pred CCEEEEEcCCCCchhcHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l 706 (1320)
..-++|.||+||||||.+-.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la 66 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIA 66 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 4468999999999998775443
No 236
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.11 E-value=0.058 Score=56.18 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.7
Q ss_pred hCCEEEEEcCCCCchhcHHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
.+.+++|+|++||||||.+=..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~ 26 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLI 26 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999986654
No 237
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.04 E-value=0.053 Score=57.10 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=20.3
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
+..+.+++|+|++||||||.+-...
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~ 28 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALV 28 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHH
Confidence 3467899999999999999986543
No 238
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=91.94 E-value=0.62 Score=54.75 Aligned_cols=69 Identities=13% Similarity=0.235 Sum_probs=53.3
Q ss_pred CCChhhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHH
Q psy1907 669 LPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAE 737 (1320)
Q Consensus 669 LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~ 737 (1320)
+...++...|+.++...+.++|..+-+.|||+.+--+++.......+..|+++.|.+-.|..+..++..
T Consensus 162 ~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp CCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 455778888999887788999999999999999866655432334556899999999888877766543
No 239
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.84 E-value=0.068 Score=60.22 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=16.8
Q ss_pred CEEEEEcCCCCchhcHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~ 705 (1320)
..++|.||+||||||.+=.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~l 67 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTL 67 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHH
Confidence 47999999999999877543
No 240
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.83 E-value=0.12 Score=58.55 Aligned_cols=57 Identities=23% Similarity=0.234 Sum_probs=38.0
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCC
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGV 741 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~ 741 (1320)
..+++++|++||||||.+-.+.......+....++-.-|+|.+|...-...++..|.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v 154 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGV 154 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCe
Confidence 568899999999999998776543322222223556778888887654445555554
No 241
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=91.71 E-value=0.086 Score=58.17 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=17.5
Q ss_pred CCEEEEEcCCCCchhcHHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
...++|.||+|+||||.+-.+..
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHH
Confidence 34588999999999987754433
No 242
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.60 E-value=0.081 Score=60.45 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=24.6
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
...++.++..+..+++.|++|+||||.+=.+
T Consensus 36 ~~~l~~~l~~~~~vll~G~pGtGKT~la~~l 66 (331)
T 2r44_A 36 INRLLIGICTGGHILLEGVPGLAKTLSVNTL 66 (331)
T ss_dssp HHHHHHHHHHTCCEEEESCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEECCCCCcHHHHHHHH
Confidence 4556667777889999999999999877544
No 243
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.54 E-value=0.17 Score=58.14 Aligned_cols=47 Identities=21% Similarity=0.283 Sum_probs=29.9
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAM 729 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~ 729 (1320)
....++.|+|++||||||.+-.+.....-.++.-.++-.-++|.+|.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~ 149 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGAT 149 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHH
Confidence 35679999999999999998765432211111212334567787764
No 244
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.50 E-value=0.23 Score=59.08 Aligned_cols=58 Identities=24% Similarity=0.241 Sum_probs=37.9
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCC
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGV 741 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~ 741 (1320)
...+++|+|++||||||.+-.+.....-.+..-.++.+-++|.+|...-...++..|.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv 154 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGV 154 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCc
Confidence 4568899999999999998766443222222224556788999887643445555553
No 245
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.49 E-value=0.067 Score=56.35 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=19.9
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
+..+.+++|+|++||||||++-.+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L 26 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRI 26 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHH
Confidence 456789999999999999998653
No 246
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.45 E-value=0.19 Score=56.66 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=22.7
Q ss_pred HHHHHHHHhCC--EEEEEcCCCCchhcHHHHHH
Q psy1907 676 QDLIDAVRDHQ--VLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 676 ~~il~~i~~~~--v~ii~geTGsGKTTqvPq~l 706 (1320)
+.+..++..+. .++|.||+|+||||.+=.+.
T Consensus 35 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~ 67 (327)
T 1iqp_A 35 KRLKHYVKTGSMPHLLFAGPPGVGKTTAALALA 67 (327)
T ss_dssp HHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHH
Confidence 44555666554 69999999999998775543
No 247
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.37 E-value=0.078 Score=56.47 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=20.0
Q ss_pred HHHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 681 AVRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 681 ~i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
.|..+.++.|+|++||||||.+=..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l 40 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCL 40 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHH
Confidence 5788999999999999999998644
No 248
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.30 E-value=0.066 Score=59.65 Aligned_cols=25 Identities=36% Similarity=0.662 Sum_probs=21.8
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
+..+.+++|+|+|||||||.+=..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHH
Confidence 6788899999999999999986554
No 249
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=91.30 E-value=0.23 Score=55.70 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=16.4
Q ss_pred EEEEEcCCCCchhcHHHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l 706 (1320)
.++|.||+|+||||.+=.+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~ 59 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALA 59 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHH
Confidence 48999999999998775443
No 250
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=91.19 E-value=0.14 Score=61.50 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
...++|.||+||||||.+=.+..+.
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999998876554443
No 251
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=91.16 E-value=0.54 Score=47.94 Aligned_cols=30 Identities=30% Similarity=0.438 Sum_probs=22.0
Q ss_pred EecHhhHHHHhcccCCc-cCCeEEEecchHH
Q psy1907 822 PISKASANQRAGRAGRV-AAGKCFRLYTAWA 851 (1320)
Q Consensus 822 ~iSkasa~QR~GRAGR~-~pG~cyrLyt~~~ 851 (1320)
|.|.++..||.|||||. .+|.||.+++...
T Consensus 108 p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 138 (165)
T 1fuk_A 108 PANKENYIHRIGRGGRFGRKGVAINFVTNED 138 (165)
T ss_dssp CSSGGGGGGSSCSCC-----CEEEEEEETTT
T ss_pred CCCHHHHHHHhcccccCCCCceEEEEEcchH
Confidence 34677889999999998 5899999998754
No 252
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.99 E-value=0.2 Score=59.77 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=15.0
Q ss_pred CCEEEEEcCCCCchhcHH
Q psy1907 685 HQVLIIEGETGSGKTTQI 702 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqv 702 (1320)
..-+++.||+|||||+.+
T Consensus 215 prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999443
No 253
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.87 E-value=0.081 Score=56.12 Aligned_cols=23 Identities=22% Similarity=0.577 Sum_probs=18.5
Q ss_pred hCCEEEEEcCCCCchhcHHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
.+++++|+|++||||||.+=..+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~ 25 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLF 25 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 56789999999999999986543
No 254
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.80 E-value=0.057 Score=55.84 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.0
Q ss_pred HhCCEEEEEcCCCCchhcHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
..+.+++|+|++||||||.+=.+
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999999763
No 255
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=90.77 E-value=0.73 Score=47.44 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=22.4
Q ss_pred ecHhhHHHHhcccCCc-cCCeEEEecchHH
Q psy1907 823 ISKASANQRAGRAGRV-AAGKCFRLYTAWA 851 (1320)
Q Consensus 823 iSkasa~QR~GRAGR~-~pG~cyrLyt~~~ 851 (1320)
.|..+..||.|||||. .+|.||.+++...
T Consensus 119 ~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 148 (175)
T 2rb4_A 119 PDYETYLHRIGRTGRFGKKGLAFNMIEVDE 148 (175)
T ss_dssp CCHHHHHHHHCBC----CCEEEEEEECGGG
T ss_pred CCHHHHHHHhcccccCCCCceEEEEEccch
Confidence 6778899999999998 4799999998754
No 256
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.71 E-value=0.097 Score=56.70 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=19.9
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
+.+..|++|.|++||||+||.-...
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999875443
No 257
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.66 E-value=0.12 Score=63.19 Aligned_cols=30 Identities=37% Similarity=0.376 Sum_probs=24.5
Q ss_pred HHHHHHHHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 676 QDLIDAVRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 676 ~~il~~i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
+.+--++..+.+++|+|+|||||||.+=-.
T Consensus 251 ~~l~~~v~~g~~i~I~GptGSGKTTlL~aL 280 (511)
T 2oap_1 251 AYLWLAIEHKFSAIVVGETASGKTTTLNAI 280 (511)
T ss_dssp HHHHHHHHTTCCEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHH
Confidence 344456788999999999999999999544
No 258
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.58 E-value=0.092 Score=56.61 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=20.6
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
|..+.+++|+|++||||||.+-..+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~ 44 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLL 44 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999999999987654
No 259
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=90.55 E-value=0.066 Score=55.79 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=20.9
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
+..+.+++|+|++||||||.+-..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~L 29 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEAL 29 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHH
Confidence 557789999999999999998755
No 260
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.25 E-value=0.11 Score=55.36 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=20.1
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
..+.+++|+|++||||||.+-..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~ 29 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVF 29 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHH
Confidence 357899999999999999886554
No 261
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.22 E-value=0.17 Score=61.19 Aligned_cols=45 Identities=24% Similarity=0.311 Sum_probs=28.7
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEE--ecccHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGC--TQPRRVAAM 729 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~--tQPRRvAA~ 729 (1320)
....++.|+|++||||||.+-.+..-.. ..+++|.+ ..+-|.+|.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~ 337 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAV 337 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhH
Confidence 3567999999999999999976542211 11234544 455565543
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.20 E-value=0.15 Score=51.57 Aligned_cols=24 Identities=38% Similarity=0.608 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
.+++|+|++||||||+.-.. -..|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 47899999999999998766 4444
No 263
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.20 E-value=0.1 Score=54.47 Aligned_cols=22 Identities=27% Similarity=0.655 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCCchhcHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l 706 (1320)
+++++|+|++||||||.+-.++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~ 22 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999986554
No 264
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.17 E-value=1.9 Score=43.81 Aligned_cols=30 Identities=40% Similarity=0.689 Sum_probs=25.8
Q ss_pred EecHhhHHHHhcccCCcc-CCeEEEecchHH
Q psy1907 822 PISKASANQRAGRAGRVA-AGKCFRLYTAWA 851 (1320)
Q Consensus 822 ~iSkasa~QR~GRAGR~~-pG~cyrLyt~~~ 851 (1320)
|.|..+..||.|||||.+ +|.|+.+++...
T Consensus 113 p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 143 (163)
T 2hjv_A 113 PLEKESYVHRTGRTGRAGNKGKAISFVTAFE 143 (163)
T ss_dssp CSSHHHHHHHTTTSSCTTCCEEEEEEECGGG
T ss_pred CCCHHHHHHhccccCcCCCCceEEEEecHHH
Confidence 457788999999999985 899999998754
No 265
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.08 E-value=0.2 Score=57.59 Aligned_cols=58 Identities=24% Similarity=0.263 Sum_probs=36.9
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhC
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMG 740 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~ 740 (1320)
....++.|+|++||||||.+-.........++.-.+...-+.|.+|..-....++..|
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcC
Confidence 3567999999999999999876643211111222344456677777665555565554
No 266
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=89.97 E-value=0.42 Score=61.22 Aligned_cols=16 Identities=44% Similarity=0.567 Sum_probs=14.2
Q ss_pred EEEEEcCCCCchhcHH
Q psy1907 687 VLIIEGETGSGKTTQI 702 (1320)
Q Consensus 687 v~ii~geTGsGKTTqv 702 (1320)
.+++.||||+|||+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6999999999999655
No 267
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.95 E-value=0.26 Score=58.49 Aligned_cols=69 Identities=23% Similarity=0.353 Sum_probs=40.1
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccCCCCccEE
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSERTIIK 764 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~s~~T~i~ 764 (1320)
..-+++.||+|||||+ +|+-||.|.|..+ |.|...+..+.
T Consensus 216 prGvLLyGPPGTGKTl------------------------------LAkAiA~e~~~~f-----i~v~~s~l~sk----- 255 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTL------------------------------LAKAVANQTSATF-----LRIVGSELIQK----- 255 (437)
T ss_dssp CSEEEEESSTTTTHHH------------------------------HHHHHHHHHTCEE-----EEEESGGGCCS-----
T ss_pred CCCCceECCCCchHHH------------------------------HHHHHHHHhCCCE-----EEEEHHHhhhc-----
Confidence 4679999999999994 3455666666543 33333333221
Q ss_pred EEc-cHHHHHHHhcCCCCCCccEEEEcccc
Q psy1907 765 YMT-DGTLHREFLSEPDLASYSVMIIDEAH 793 (1320)
Q Consensus 765 y~T-dG~Llrel~~dp~L~~ys~iIiDE~H 793 (1320)
|.- ..-++|.+...-.-...++|.|||++
T Consensus 256 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiD 285 (437)
T 4b4t_I 256 YLGDGPRLCRQIFKVAGENAPSIVFIDEID 285 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEEEES
T ss_pred cCchHHHHHHHHHHHHHhcCCcEEEEehhh
Confidence 111 12345555433223345899999984
No 268
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=89.79 E-value=0.37 Score=57.67 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=18.1
Q ss_pred CCEEEEEcCCCCchhcHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l 706 (1320)
.+.++|.|++|+||||.+-.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia 151 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIG 151 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999885543
No 269
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.75 E-value=0.086 Score=57.05 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=16.4
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
+..+.+++|+|++||||||.+-.+
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L 47 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKL 47 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHH
Confidence 356789999999999999998644
No 270
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.62 E-value=0.2 Score=58.43 Aligned_cols=45 Identities=36% Similarity=0.441 Sum_probs=30.9
Q ss_pred HHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecc
Q psy1907 677 DLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQP 723 (1320)
Q Consensus 677 ~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQP 723 (1320)
.+--.+..+.+++|+|+|||||||.+-..+-. +....+.|.+--+
T Consensus 167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~--~~~~~g~I~ie~~ 211 (361)
T 2gza_A 167 FLRRAVQLERVIVVAGETGSGKTTLMKALMQE--IPFDQRLITIEDV 211 (361)
T ss_dssp HHHHHHHTTCCEEEEESSSSCHHHHHHHHHTT--SCTTSCEEEEESS
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHhc--CCCCceEEEECCc
Confidence 34446789999999999999999999766532 2222334555444
No 271
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.62 E-value=0.15 Score=60.15 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=40.8
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCccCCCCccE
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSERTII 763 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~~~s~~T~i 763 (1320)
-..-+++.||+|||||+ +|+-||.|.|..+ |.|...+..+.-
T Consensus 181 ~prGvLL~GPPGTGKTl------------------------------lAkAiA~e~~~~f-----~~v~~s~l~sk~--- 222 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTL------------------------------LARAVAHHTDCKF-----IRVSGAELVQKY--- 222 (405)
T ss_dssp CCCCEEEESCSSSSHHH------------------------------HHHHHHHHHTCEE-----EEEEGGGGSCSS---
T ss_pred CCCceEEeCCCCCCHHH------------------------------HHHHHHHhhCCCc-----eEEEhHHhhccc---
Confidence 34679999999999993 3455666666543 344433333321
Q ss_pred EEEccHHHHHHHhcCCCCCCccEEEEcccc
Q psy1907 764 KYMTDGTLHREFLSEPDLASYSVMIIDEAH 793 (1320)
Q Consensus 764 ~y~TdG~Llrel~~dp~L~~ys~iIiDE~H 793 (1320)
+.-..-.+|++...-.-...++|.|||++
T Consensus 223 -vGese~~vr~lF~~Ar~~aP~IIFiDEiD 251 (405)
T 4b4t_J 223 -IGEGSRMVRELFVMAREHAPSIIFMDEID 251 (405)
T ss_dssp -TTHHHHHHHHHHHHHHHTCSEEEEEESSS
T ss_pred -cchHHHHHHHHHHHHHHhCCceEeeecch
Confidence 00112345555433223346899999984
No 272
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=89.57 E-value=0.75 Score=52.25 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=21.6
Q ss_pred HHHHHHHHhCC--EEEEEcCCCCchhcHHHH
Q psy1907 676 QDLIDAVRDHQ--VLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 676 ~~il~~i~~~~--v~ii~geTGsGKTTqvPq 704 (1320)
+.|..+|++++ ..++.||+|+||||..-.
T Consensus 7 ~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 7 ETLKRIIEKSEGISILINGEDLSYPREVSLE 37 (305)
T ss_dssp HHHHHHHHTCSSEEEEEECSSSSHHHHHHHH
T ss_pred HHHHHHHHCCCCcEEEEECCCCCCHHHHHHH
Confidence 34556666654 899999999999976543
No 273
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.47 E-value=0.22 Score=63.77 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=15.2
Q ss_pred EEEEEcCCCCchhcHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq 704 (1320)
.+++.||||+|||+..=.
T Consensus 490 ~~ll~G~~GtGKT~la~~ 507 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQ 507 (758)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 699999999999976543
No 274
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.35 E-value=0.18 Score=53.99 Aligned_cols=25 Identities=40% Similarity=0.700 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchhcHHHHHHHHccC
Q psy1907 687 VLIIEGETGSGKTTQIPQYLHEAGF 711 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~e~~~ 711 (1320)
++||.|++||||+||--...-..|+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5789999999999998766555554
No 275
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.27 E-value=0.15 Score=52.68 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCCchhcHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l 706 (1320)
+.+++|+|++||||||+.-..-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999986543
No 276
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.11 E-value=0.18 Score=60.09 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=15.2
Q ss_pred hCCEEEEEcCCCCchhcHH
Q psy1907 684 DHQVLIIEGETGSGKTTQI 702 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqv 702 (1320)
-..-+++.||+|||||+.+
T Consensus 205 ~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCCEEEEESCTTTTHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456999999999999443
No 277
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=88.99 E-value=0.15 Score=54.37 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=18.6
Q ss_pred hCCEEEEEcCCCCchhcHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
...++.|+|++||||||.+-..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l 42 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPL 42 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999988543
No 278
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.94 E-value=0.34 Score=49.39 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=23.4
Q ss_pred HHHHHHHH--hCCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 676 QDLIDAVR--DHQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 676 ~~il~~i~--~~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
+++++.+. ....++|+|++|+||||.+=.+..+
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34444454 3467999999999999988655443
No 279
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.91 E-value=0.23 Score=53.47 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=20.8
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
.....+++|+|.+|||||||.-.+--..|
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34457899999999999999876544443
No 280
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.71 E-value=0.26 Score=51.28 Aligned_cols=29 Identities=28% Similarity=0.574 Sum_probs=22.5
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
+....+++|+|.+||||||+.-.+--..|
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45677999999999999999876543333
No 281
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=88.66 E-value=0.25 Score=52.14 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=21.6
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
+....+++|+|++||||||+.-...-..|
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45677999999999999999876543333
No 282
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=88.58 E-value=0.83 Score=57.49 Aligned_cols=80 Identities=26% Similarity=0.389 Sum_probs=54.8
Q ss_pred HhccCCChhhHHHHHHHHHhCCEEEEEcCCCCchhcH--HHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhC--
Q psy1907 665 TKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQ--IPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMG-- 740 (1320)
Q Consensus 665 ~r~~LPi~~~~~~il~~i~~~~v~ii~geTGsGKTTq--vPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~-- 740 (1320)
.|+.|-..++--+++-++.=|+--|..-.||+|||.- +|-||.- +.+.+ +.+.-|-+.- |.|-|++|+
T Consensus 68 a~R~lg~r~~dvQligg~~L~~G~iaEM~TGEGKTLva~lp~~lnA--L~G~~--vhVvT~ndyL----A~rdae~m~~l 139 (822)
T 3jux_A 68 ARRTLGMRPFDVQVMGGIALHEGKVAEMKTGEGKTLAATMPIYLNA--LIGKG--VHLVTVNDYL----ARRDALWMGPV 139 (822)
T ss_dssp HHHHTSCCCCHHHHHHHHHHHTTCEEECCTTSCHHHHTHHHHHHHH--TTSSC--EEEEESSHHH----HHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHHHhCCChhhccCCCCccHHHHHHHHHHH--hcCCc--eEEEeccHHH----HHhHHHHHHHH
Confidence 4677888888999999987777778899999999976 4766643 33333 4444555554 455555553
Q ss_pred -CCCCCeeeEEee
Q psy1907 741 -VKLGCEVGYAIR 752 (1320)
Q Consensus 741 -~~lG~~VGY~ir 752 (1320)
.-+|-+||.-+.
T Consensus 140 ~~~Lglsvg~i~~ 152 (822)
T 3jux_A 140 YLFLGLRVGVINS 152 (822)
T ss_dssp HHHTTCCEEEEET
T ss_pred HHHhCCEEEEEcC
Confidence 456778886665
No 283
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.57 E-value=0.13 Score=56.24 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=20.5
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..++++.|+|+.||||||.+-..
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l 51 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNII 51 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHH
Confidence 457899999999999999998643
No 284
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.56 E-value=0.18 Score=50.43 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=23.3
Q ss_pred HHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 676 QDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 676 ~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
+.+..+...+..++|.||+|||||+.. ++|+..
T Consensus 15 ~~~~~~a~~~~~vll~G~~GtGKt~lA-~~i~~~ 47 (145)
T 3n70_A 15 RRLQQLSETDIAVWLYGAPGTGRMTGA-RYLHQF 47 (145)
T ss_dssp HHHHHHTTCCSCEEEESSTTSSHHHHH-HHHHHS
T ss_pred HHHHHHhCCCCCEEEECCCCCCHHHHH-HHHHHh
Confidence 334444456778999999999999766 455554
No 285
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=88.48 E-value=0.59 Score=53.49 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=23.8
Q ss_pred HHHHHH--hCCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 678 LIDAVR--DHQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 678 il~~i~--~~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
|..++. ....++|.|+||+|||+.+-..+-+.
T Consensus 36 L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 36 IYDSLMSSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp HHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344443 45689999999999999987766543
No 286
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.48 E-value=0.16 Score=60.55 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=15.0
Q ss_pred CCEEEEEcCCCCchhcHH
Q psy1907 685 HQVLIIEGETGSGKTTQI 702 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqv 702 (1320)
..-+++.||+|||||+.+
T Consensus 215 prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeeEEECcCCCCHHHHH
Confidence 467999999999999443
No 287
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=88.38 E-value=0.17 Score=53.63 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=19.8
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
..+.+++|+|++||||||+.-...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVL 33 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999876543
No 288
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=88.30 E-value=0.28 Score=53.57 Aligned_cols=52 Identities=17% Similarity=0.053 Sum_probs=32.9
Q ss_pred CHHHHHHHHcCCCCCCCccEEEEeCCCccCcCcchHHHHHHHHhhcCCCCcEEEEecCcC
Q psy1907 2 TDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATLD 61 (1320)
Q Consensus 2 T~G~LLr~l~~d~~Ls~~s~iVLDEaHeR~l~td~ll~llk~l~~~r~~~qlIl~SATl~ 61 (1320)
|++.+.+... ....++++|||||||.- ... .. +.+....+..+++++|||+.
T Consensus 178 T~~~l~~~~~--~~~~~~~llIiDEaH~l-~~~-~~----~~i~~~~~~~~~l~LSATp~ 229 (237)
T 2fz4_A 178 TYDSAYVNAE--KLGNRFMLLIFDEVHHL-PAE-SY----VQIAQMSIAPFRLGLTATFE 229 (237)
T ss_dssp EHHHHHHTHH--HHTTTCSEEEEECSSCC-CTT-TH----HHHHHTCCCSEEEEEEESCC
T ss_pred eHHHHHhhHH--HhcccCCEEEEECCccC-CCh-HH----HHHHHhccCCEEEEEecCCC
Confidence 6677665443 12356999999999942 222 22 23333445678899999983
No 289
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.29 E-value=0.2 Score=50.15 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=20.2
Q ss_pred HHHHHHHHhCCEEEEEcCCCCchhcHH
Q psy1907 676 QDLIDAVRDHQVLIIEGETGSGKTTQI 702 (1320)
Q Consensus 676 ~~il~~i~~~~v~ii~geTGsGKTTqv 702 (1320)
+.+..+...+..++|.||+|+|||+..
T Consensus 18 ~~~~~~~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 18 REVEAAAKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HHHHHHHTCSSCEEEEEETTCCHHHHH
T ss_pred HHHHHHhCCCCcEEEECCCCccHHHHH
Confidence 344444566778999999999999654
No 290
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=88.27 E-value=0.93 Score=57.10 Aligned_cols=101 Identities=20% Similarity=0.160 Sum_probs=58.7
Q ss_pred CcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecCc-----------cCCCCccEEEEccHHHHHHHhcCCCCCC
Q psy1907 715 KMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFED-----------CTSERTIIKYMTDGTLHREFLSEPDLAS 783 (1320)
Q Consensus 715 ~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe~-----------~~s~~T~i~y~TdG~Llrel~~dp~L~~ 783 (1320)
+.+++|.-+.+-.|-.++..+.+. |-.|.|-. .+- -.+.+..|+.+|+- +-.--++.+
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh-~~~~~~~R~~~l~~f~~g~~~VLVaT~~-----l~~GlDip~ 513 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLH-SEIKTLERIEIIRDLRLGKYDVLVGINL-----LREGLDIPE 513 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEEC-TTCCHHHHHHHHHHHHHTSCSEEEESCC-----CSTTCCCTT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc-----CCCeEEEe-CCCCHHHHHHHHHHHhcCCeEEEEecch-----hhCCcccCC
Confidence 346777777777777777766542 33343311 110 01234567777761 111124555
Q ss_pred ccEEEEcccccceEEEcCCccceeeccCCCCcceeEEEEecHhhHHHHhcccCCccCCeEEEecchH
Q psy1907 784 YSVMIIDEAHPKVYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGRAGRVAAGKCFRLYTAW 850 (1320)
Q Consensus 784 ys~iIiDE~HER~~ViD~G~~k~~~y~~~~~~~~L~~~~iSkasa~QR~GRAGR~~pG~cyrLyt~~ 850 (1320)
+++||+-++ +..|+ |.|..+..||+|||||..+|+|+-+++..
T Consensus 514 v~lVi~~d~------------------d~~G~------p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 556 (661)
T 2d7d_A 514 VSLVAILDA------------------DKEGF------LRSERSLIQTIGRAARNAEGRVIMYADKI 556 (661)
T ss_dssp EEEEEETTT------------------TCCTT------TTSHHHHHHHHHTTTTSTTCEEEEECSSC
T ss_pred CCEEEEeCc------------------ccccC------CCCHHHHHHHhCcccCCCCCEEEEEEeCC
Confidence 555554333 11122 45678899999999999999999998764
No 291
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.20 E-value=0.28 Score=55.72 Aligned_cols=46 Identities=30% Similarity=0.380 Sum_probs=29.4
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEE--ecccHHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGC--TQPRRVAAMS 730 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~--tQPRRvAA~s 730 (1320)
....++.|+|++||||||.+-........ .+| +|.+ .-..|.+|+.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~g-~V~l~g~d~~r~~a~~ 145 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGT-KVLMAAGDTFRAAASD 145 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHH-TTC-CEEEECCCCSCHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHH-cCC-eEEEEeecccchhHHH
Confidence 45679999999999999999766432111 123 3433 3455666643
No 292
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.19 E-value=0.18 Score=51.51 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=17.6
Q ss_pred CEEEEEcCCCCchhcHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l 706 (1320)
.+++|+|.+||||||+.-.+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHH
Confidence 378999999999999986543
No 293
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.15 E-value=0.25 Score=52.71 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=20.6
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
.+.+++|+|++||||||.+=..+-
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 578999999999999999876553
No 294
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.14 E-value=0.13 Score=60.15 Aligned_cols=25 Identities=36% Similarity=0.662 Sum_probs=21.9
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
+..+.+++|+|+|||||||.+-..+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~ 157 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMI 157 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHH
Confidence 5678899999999999999997664
No 295
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=88.14 E-value=0.28 Score=49.77 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=17.5
Q ss_pred CEEEEEcCCCCchhcHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l 706 (1320)
.+++|+|++||||||+.-.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999886543
No 296
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=88.03 E-value=0.2 Score=52.82 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=20.0
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
....+++|+|+.||||||+.-.+.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999987654
No 297
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=88.00 E-value=0.2 Score=54.16 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=20.5
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
+..+.+++|+||.||||||.+-..+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~ 37 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALL 37 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHh
Confidence 5678899999999999999987654
No 298
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=87.95 E-value=0.56 Score=56.68 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=17.5
Q ss_pred CEEEEEcCCCCchhcHHHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
.-++|+||+||||||.+-.+.-+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999877544333
No 299
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.93 E-value=0.24 Score=53.28 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=27.9
Q ss_pred HHHH-HHHHhCCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 676 QDLI-DAVRDHQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 676 ~~il-~~i~~~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
++++ -.|..+.+++|.|++||||||.+=+++...
T Consensus 14 D~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 14 DKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp HHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4444 356788999999999999999999988753
No 300
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.69 E-value=0.39 Score=50.01 Aligned_cols=26 Identities=35% Similarity=0.583 Sum_probs=21.1
Q ss_pred HHHhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 681 AVRDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 681 ~i~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
.+....+++|+|.+||||||+.-.+-
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 34567899999999999999986543
No 301
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=87.65 E-value=0.18 Score=60.23 Aligned_cols=45 Identities=27% Similarity=0.239 Sum_probs=29.8
Q ss_pred CEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMS 730 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~s 730 (1320)
.+++|+|.+||||||.+-.+.....-.+....++.+-|.|.+|+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~ 144 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYE 144 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHH
Confidence 589999999999999987765443211112234556677777654
No 302
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.63 E-value=0.26 Score=57.37 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=20.6
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
+..+.+++|+|+|||||||.+=-.+
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3456799999999999999986554
No 303
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=87.60 E-value=0.34 Score=57.84 Aligned_cols=56 Identities=29% Similarity=0.346 Sum_probs=38.1
Q ss_pred CEEEEEcCCCCchhcHHHHHHHHccCC-CCCcEEEEecccHHHHHHHHHHHHHHhCC
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHEAGFT-KDKMKIGCTQPRRVAAMSVSARVAEEMGV 741 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e~~~~-~~~~~I~~tQPRRvAA~svA~rva~e~~~ 741 (1320)
.+++|+|.+|+||||.+-.+.+...-. +....++.+-|.|.+|+.....++...|.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l 157 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGV 157 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCe
Confidence 588889999999999987765543322 22224566778888887755555555554
No 304
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.60 E-value=0.11 Score=56.26 Aligned_cols=34 Identities=29% Similarity=0.597 Sum_probs=27.7
Q ss_pred HHHHH-HHHhCCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 676 QDLID-AVRDHQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 676 ~~il~-~i~~~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
|+++. .+..+.+++|.|+||+||||..=|++++.
T Consensus 20 D~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 20 DELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp GGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34554 56788999999999999999998887653
No 305
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.58 E-value=0.2 Score=54.26 Aligned_cols=26 Identities=31% Similarity=0.603 Sum_probs=23.6
Q ss_pred HHHhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 681 AVRDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 681 ~i~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
.|..+.++.|.|++||||||.+=+++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 57889999999999999999998776
No 306
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=87.56 E-value=0.17 Score=55.50 Aligned_cols=24 Identities=17% Similarity=0.508 Sum_probs=20.7
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..++++.|+|+.||||||.+=..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l 51 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSAL 51 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999998644
No 307
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.47 E-value=0.24 Score=59.34 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=15.8
Q ss_pred HhCCEEEEEcCCCCchhcH
Q psy1907 683 RDHQVLIIEGETGSGKTTQ 701 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTq 701 (1320)
.-..-+++.||+|||||+.
T Consensus 241 ~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp CCCSEEEECSCTTSSHHHH
T ss_pred CCCCceEeeCCCCCcHHHH
Confidence 3567899999999999943
No 308
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=87.46 E-value=0.23 Score=52.05 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=18.8
Q ss_pred hCCEEEEEcCCCCchhcHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
.+.+++|+|..|||||||.-.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L 24 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNI 24 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 4568999999999999999654
No 309
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=87.44 E-value=0.13 Score=55.00 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=26.2
Q ss_pred HHHH-HHHHhCCEEEEEcCCCCchhcHHHHHHH
Q psy1907 676 QDLI-DAVRDHQVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 676 ~~il-~~i~~~~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
++++ -.|..+.++.|+|++||||||.+-+++.
T Consensus 15 D~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 15 DKLLGGGIETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp HHHTTSSEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred HhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3444 3567899999999999999999988764
No 310
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=87.43 E-value=0.2 Score=60.31 Aligned_cols=17 Identities=29% Similarity=0.663 Sum_probs=14.7
Q ss_pred CEEEEEcCCCCchhcHH
Q psy1907 686 QVLIIEGETGSGKTTQI 702 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqv 702 (1320)
..+++.|||||||||..
T Consensus 64 ~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 47999999999999654
No 311
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=87.42 E-value=0.21 Score=50.91 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=17.8
Q ss_pred CCEEEEEcCCCCchhcHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~ 705 (1320)
..+++|+|++||||||..-.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQL 24 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 468999999999999987543
No 312
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.41 E-value=0.18 Score=53.40 Aligned_cols=32 Identities=25% Similarity=0.160 Sum_probs=27.1
Q ss_pred HHHHH-HHHhCCEEEEEcCCCCchhcHHHHHHH
Q psy1907 676 QDLID-AVRDHQVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 676 ~~il~-~i~~~~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
++++. .+..+.+++|.|++||||||.+-+++.
T Consensus 10 D~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 10 DSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44554 577889999999999999999999876
No 313
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=87.41 E-value=0.34 Score=49.37 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=22.9
Q ss_pred HHHHHHHh--CCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 677 DLIDAVRD--HQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 677 ~il~~i~~--~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
.+++.+.. ...++|+|++|+||||.+-.+..+
T Consensus 33 ~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 33 RAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34444433 568899999999999988665443
No 314
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=87.17 E-value=0.3 Score=51.42 Aligned_cols=42 Identities=26% Similarity=0.440 Sum_probs=26.1
Q ss_pred CCHHHHHHHHcCC-------CCCCCccEEEEeCCCccCcCcchHHHHHHH
Q psy1907 1 MTDGTLHREFLSE-------PDLASYSVMIIDEAHERTLHTDILFGLVKD 43 (1320)
Q Consensus 1 ~T~G~LLr~l~~d-------~~Ls~~s~iVLDEaHeR~l~td~ll~llk~ 43 (1320)
+||++|.+.+... ..+.++++|||||||. ....++...+++.
T Consensus 138 ~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~-~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 138 STAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH-TNKEAVYNNIMRH 186 (216)
T ss_dssp EEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHHHHH
T ss_pred ECHHHHHHHHhccCcccccccchhcccEEEEECchh-hccCCcHHHHHHH
Confidence 4899999988764 3478999999999994 3444454444443
No 315
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=87.13 E-value=0.94 Score=56.50 Aligned_cols=57 Identities=23% Similarity=0.248 Sum_probs=42.1
Q ss_pred hCCEEEEEcCCCCchhcHHHHH---HHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCC
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQY---LHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGV 741 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~---l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~ 741 (1320)
.+..++|.|++||||||.+-.- |++.+-. ...+|+++-+-+.||..+.+|+.+..|.
T Consensus 21 ~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~-~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENC-SPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCC-CGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCC-ChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 3567899999999999998653 4443211 2235888778888999999999987764
No 316
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=87.12 E-value=0.17 Score=54.88 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.1
Q ss_pred HHhCCEEEEEcCCCCchhcHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq 704 (1320)
|..+.++.|+|+.||||||.+=.
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~ 49 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYI 49 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45788999999999999999864
No 317
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=86.99 E-value=0.18 Score=56.61 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=20.8
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..+.++.|+|+.||||||.+-..
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l 54 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNF 54 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999998644
No 318
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=86.78 E-value=0.37 Score=49.03 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHccC
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAGF 711 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~~ 711 (1320)
-|+++|+|..||||||+--.+--..|+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 389999999999999987543222354
No 319
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=86.77 E-value=0.34 Score=50.04 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
+.+++|+|.+||||||+.-.+.-..|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999876543333
No 320
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=86.72 E-value=0.24 Score=51.17 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=17.3
Q ss_pred EEEEEcCCCCchhcHHHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l 706 (1320)
+++|+|.+||||||+.-..-
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999987553
No 321
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=86.72 E-value=0.39 Score=49.56 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
..+++|+|++||||||+.-..--..|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999998765433333
No 322
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=86.71 E-value=0.33 Score=49.71 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.3
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
..+.++.|.|+.||||||.+--+.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~ 54 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGML 54 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 678899999999999999987654
No 323
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=86.70 E-value=0.24 Score=50.77 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCCchhcHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l 706 (1320)
..+++|+|+.||||||+.-.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 4689999999999999986543
No 324
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=86.68 E-value=0.39 Score=52.39 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=21.8
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHHccC
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHEAGF 711 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e~~~ 711 (1320)
...+++|+|++||||||++-...-..|+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3479999999999999999765544444
No 325
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=86.67 E-value=0.45 Score=59.53 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=56.9
Q ss_pred HHHHHHHh--CCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCCeeeEEeecC
Q psy1907 677 DLIDAVRD--HQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFE 754 (1320)
Q Consensus 677 ~il~~i~~--~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~~VGY~irfe 754 (1320)
++++.+.+ ..+.||+|+-|.||||.+=..+.... + .++||=|..-|+..+.+.+.+
T Consensus 182 ~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~----~-~~~vtAP~~~a~~~l~~~~~~----------------- 239 (671)
T 2zpa_A 182 QLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA----G-RAIVTAPAKASTDVLAQFAGE----------------- 239 (671)
T ss_dssp HHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS----S-CEEEECSSCCSCHHHHHHHGG-----------------
T ss_pred HHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH----h-CcEEECCCHHHHHHHHHHhhC-----------------
Confidence 34444443 46889999999999999988776542 1 379999999999888776532
Q ss_pred ccCCCCccEEEEccHHHHHHHhcCCCCCCccEEEEccc
Q psy1907 755 DCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEA 792 (1320)
Q Consensus 755 ~~~s~~T~i~y~TdG~Llrel~~dp~L~~ys~iIiDE~ 792 (1320)
.|.|+...-++. .+...+.+|||||
T Consensus 240 -------~i~~~~Pd~~~~------~~~~~dlliVDEA 264 (671)
T 2zpa_A 240 -------KFRFIAPDALLA------SDEQADWLVVDEA 264 (671)
T ss_dssp -------GCCBCCHHHHHH------SCCCCSEEEEETG
T ss_pred -------CeEEeCchhhhh------CcccCCEEEEEch
Confidence 144554444432 2346899999999
No 326
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=86.67 E-value=0.45 Score=58.54 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=18.5
Q ss_pred hCCEEEEEcCCCCchhcHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
...+++|.||+||||||.+=..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~i 128 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSI 128 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4679999999999999887544
No 327
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=86.54 E-value=0.38 Score=50.55 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
.+++|+|.+||||||+.-.+.-..|
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999876654444
No 328
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=86.52 E-value=0.32 Score=50.41 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
..+++|+|.+||||||+.-.+.-..|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999876543333
No 329
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.42 E-value=0.26 Score=50.90 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=18.1
Q ss_pred CEEEEEcCCCCchhcHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l 706 (1320)
.+++|+|++||||||.+--+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 489999999999999986543
No 330
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=86.39 E-value=0.21 Score=55.42 Aligned_cols=24 Identities=42% Similarity=0.534 Sum_probs=20.6
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..+.++.|+|+.||||||.+=-.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l 53 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVI 53 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHH
T ss_pred EeCCCEEEEECCCCCCHHHHHHHH
Confidence 457889999999999999998643
No 331
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=86.38 E-value=0.37 Score=51.14 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchhcHHHHHHHHccC
Q psy1907 687 VLIIEGETGSGKTTQIPQYLHEAGF 711 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~e~~~ 711 (1320)
.++|+|++||||||+.-.+.-+.|+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999998765444443
No 332
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=86.34 E-value=0.21 Score=55.09 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=20.8
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..++++.|+|+.||||||.+-..
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l 55 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLI 55 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999998654
No 333
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=86.32 E-value=0.21 Score=55.55 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=20.5
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..+.++.|+|+.||||||.+=..
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l 52 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCI 52 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457889999999999999998643
No 334
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.26 E-value=0.37 Score=55.03 Aligned_cols=34 Identities=32% Similarity=0.469 Sum_probs=25.9
Q ss_pred CEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecc
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQP 723 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQP 723 (1320)
++++|+|+.||||||.+-.++-.. .+.+|++..|
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~----~~~~~aVi~~ 38 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ----HGYKIAVIEN 38 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC----CCCCEEEECS
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc----CCCcEEEEEe
Confidence 589999999999999997765321 2346777776
No 335
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=86.25 E-value=0.25 Score=52.37 Aligned_cols=23 Identities=39% Similarity=0.358 Sum_probs=18.4
Q ss_pred HhCCEEEEEcCCCCchhcHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
....++.|+|++||||||.+-.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l 26 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQAL 26 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHH
Confidence 34568999999999999987543
No 336
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=86.23 E-value=0.41 Score=50.86 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 687 VLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
.++|+|++||||||+.-.+.-+.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999876554444
No 337
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=86.23 E-value=0.19 Score=54.20 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=20.6
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..++++.|+|+.||||||.+=-.
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l 55 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTI 55 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457889999999999999998643
No 338
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=86.23 E-value=0.32 Score=50.55 Aligned_cols=19 Identities=47% Similarity=0.672 Sum_probs=16.7
Q ss_pred EEEEEcCCCCchhcHHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~ 705 (1320)
+++|+|..|||||||.-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L 20 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLL 20 (197)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999998654
No 339
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=86.20 E-value=1.8 Score=54.56 Aligned_cols=29 Identities=31% Similarity=0.235 Sum_probs=25.5
Q ss_pred EecHhhHHHHhcccCCccCCeEEEecchH
Q psy1907 822 PISKASANQRAGRAGRVAAGKCFRLYTAW 850 (1320)
Q Consensus 822 ~iSkasa~QR~GRAGR~~pG~cyrLyt~~ 850 (1320)
|.|..+..||.|||||.++|+|+-+++..
T Consensus 522 p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 550 (664)
T 1c4o_A 522 LRSERSLIQTIGRAARNARGEVWLYADRV 550 (664)
T ss_dssp GGSHHHHHHHHGGGTTSTTCEEEEECSSC
T ss_pred CCCHHHHHHHHCccCcCCCCEEEEEEcCC
Confidence 45778999999999999999999998764
No 340
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=86.19 E-value=0.62 Score=52.74 Aligned_cols=34 Identities=18% Similarity=0.396 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 676 QDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 676 ~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
++|.+++.++++++|+|+.|+||||.+=+++.+.
T Consensus 22 ~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 22 RKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 4556666667999999999999999999888765
No 341
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=86.15 E-value=0.21 Score=55.67 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=20.7
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..+.++.|+|+.||||||.+-..
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l 57 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLL 57 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHH
Confidence 457899999999999999998644
No 342
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=86.14 E-value=0.22 Score=54.27 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=20.7
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..+.++.|+|+.||||||.+=-.
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l 54 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMI 54 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457889999999999999998644
No 343
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=86.02 E-value=0.39 Score=49.63 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=18.1
Q ss_pred CCEEEEEcCCCCchhcHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l 706 (1320)
..+++|+|.+||||||+.-.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999986543
No 344
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=86.02 E-value=0.22 Score=55.26 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.8
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..++++.|+|+.||||||.+=..
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l 66 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLL 66 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999998644
No 345
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.87 E-value=0.23 Score=54.49 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=20.5
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..+.++.|+|+.||||||.+=..
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l 52 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAI 52 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457889999999999999998643
No 346
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=85.80 E-value=0.2 Score=54.99 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=20.5
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..++++.|+|+.||||||.+=-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l 48 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLL 48 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457889999999999999998643
No 347
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=85.78 E-value=0.4 Score=50.65 Aligned_cols=21 Identities=48% Similarity=0.466 Sum_probs=18.1
Q ss_pred CCEEEEEcCCCCchhcHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~ 705 (1320)
..++.|+|++||||||.+-.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l 42 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQL 42 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 468999999999999998654
No 348
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=85.77 E-value=0.28 Score=53.17 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=18.5
Q ss_pred hCCEEEEEcCCCCchhcHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq 704 (1320)
.+.++.|.|+.||||||++-.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~ 39 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNH 39 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 567899999999999999864
No 349
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=85.71 E-value=0.49 Score=53.82 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCCchhcHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l 706 (1320)
..++.|+|++||||||.+-...
T Consensus 102 g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 5799999999999999997664
No 350
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=85.68 E-value=0.4 Score=49.44 Aligned_cols=25 Identities=36% Similarity=0.593 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
.+++|+|.+||||||+.-.+--..|
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999998865543334
No 351
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=85.65 E-value=0.24 Score=55.20 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=20.3
Q ss_pred HHhCCEEEEEcCCCCchhcHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq 704 (1320)
|..++++.|+|+.||||||.+=-
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~ 69 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRC 69 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHH
T ss_pred EcCCCEEEEEcCCCCcHHHHHHH
Confidence 45789999999999999999864
No 352
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=85.64 E-value=0.24 Score=54.69 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.7
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..++++.|+|+.||||||.+=..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l 49 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKIL 49 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999998644
No 353
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=85.64 E-value=0.33 Score=53.08 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
.-+++|+|++|||||||.-.+.-..|
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34799999999999999977654444
No 354
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=85.62 E-value=0.18 Score=57.46 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.6
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..+.++.|+|++||||||.+-..
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll 100 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLL 100 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHHHHHH
Confidence 457899999999999999999533
No 355
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=85.61 E-value=1 Score=53.41 Aligned_cols=26 Identities=42% Similarity=0.721 Sum_probs=21.4
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
..+.+++|+|+|||||||.+=..+-.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 35679999999999999999766543
No 356
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=85.60 E-value=0.42 Score=49.88 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=17.0
Q ss_pred EEEEEcCCCCchhcHHHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l 706 (1320)
+++|+|.+||||||+.-..-
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~ 21 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEIS 21 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 68999999999999886543
No 357
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=85.60 E-value=0.42 Score=49.24 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=19.2
Q ss_pred hCCEEEEEcCCCCchhcHHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
...+++|+|.+||||||+.-.+-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 45689999999999999887543
No 358
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.59 E-value=0.53 Score=61.14 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=16.9
Q ss_pred CEEEEEcCCCCchhcHHHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
..++|.||||+|||+..= .|+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~-~la~ 610 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAK-TLAA 610 (854)
T ss_dssp EEEEEBSCSSSSHHHHHH-HHHH
T ss_pred eEEEEECCCCCCHHHHHH-HHHH
Confidence 378999999999998653 4444
No 359
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=85.53 E-value=0.33 Score=50.68 Aligned_cols=20 Identities=45% Similarity=0.720 Sum_probs=16.9
Q ss_pred EEEEEcCCCCchhcHHHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l 706 (1320)
.++|+|++||||||.+=...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~ 21 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIV 21 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999986553
No 360
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.41 E-value=0.25 Score=54.81 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=20.6
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..++++.|+|+.||||||.+=-.
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l 61 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRII 61 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHH
T ss_pred EcCCcEEEEECCCCCCHHHHHHHH
Confidence 457889999999999999998643
No 361
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=85.40 E-value=0.25 Score=55.11 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=20.7
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..+.++.|+|+.||||||.+=-.
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l 66 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATL 66 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999998643
No 362
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=85.36 E-value=0.65 Score=48.69 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
..+++|+|.+||||||+.-..--..+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999876544333
No 363
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=85.32 E-value=0.46 Score=50.69 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
..++.|+|++||||||+.-.+.-..|
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999865533334
No 364
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=85.31 E-value=0.31 Score=50.31 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=18.4
Q ss_pred hCCEEEEEcCCCCchhcHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
.+.+++|+|..||||||+.-.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L 25 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMAL 25 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4568999999999999987543
No 365
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=85.29 E-value=1.3 Score=51.17 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCchhcHHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
..++.|+|.|||||||.+-.++-
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999987764
No 366
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=85.18 E-value=0.34 Score=50.40 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=18.3
Q ss_pred CEEEEEcCCCCchhcHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l 706 (1320)
.+++|+|++||||||.+-...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 578999999999999987664
No 367
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=85.14 E-value=0.26 Score=55.08 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.7
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..+.++.|+|+.||||||.+=-.
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l 65 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALL 65 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999998643
No 368
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=85.05 E-value=0.23 Score=52.55 Aligned_cols=20 Identities=35% Similarity=0.605 Sum_probs=17.4
Q ss_pred EEEEEcCCCCchhcHHHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l 706 (1320)
+++|+|.+||||||++-...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 68999999999999997653
No 369
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=84.98 E-value=0.27 Score=54.78 Aligned_cols=23 Identities=35% Similarity=0.696 Sum_probs=20.2
Q ss_pred HHhCCEEEEEcCCCCchhcHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq 704 (1320)
|..+.++.|+|+.||||||.+=-
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~ 52 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQI 52 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHH
Confidence 45788999999999999999864
No 370
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=84.97 E-value=0.52 Score=54.89 Aligned_cols=45 Identities=31% Similarity=0.384 Sum_probs=28.7
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEE--ecccHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGC--TQPRRVAAM 729 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~--tQPRRvAA~ 729 (1320)
....++.|+|++||||||.+-....-.-. .+| +|.+ .-..|.+|+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~G-~V~l~g~D~~r~~a~ 201 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGT-KVLMAAGDTFRAAAS 201 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHH-TTC-CEEEECCCCSCHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccc-cCC-EEEEecccccccchh
Confidence 45679999999999999999765432111 123 3433 344566664
No 371
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=84.91 E-value=0.34 Score=55.18 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=22.9
Q ss_pred HHHHhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 680 DAVRDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 680 ~~i~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
-.|..++++.|+|++||||||.+-..+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHh
Confidence 345789999999999999999987654
No 372
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=84.90 E-value=0.36 Score=50.92 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=19.2
Q ss_pred hCCEEEEEcCCCCchhcHHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
...+++|+|..||||||+.-.+-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 45689999999999999986553
No 373
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=84.90 E-value=0.43 Score=50.23 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=18.0
Q ss_pred CEEEEEcCCCCchhcHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l 706 (1320)
.+++|+|++||||||+.-.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIA 39 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999886543
No 374
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=84.88 E-value=0.47 Score=50.08 Aligned_cols=23 Identities=30% Similarity=0.670 Sum_probs=18.7
Q ss_pred CEEEEEcCCCCchhcHHHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
+.+||+||.||||||.+=..+-+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999988655543
No 375
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=84.84 E-value=0.57 Score=56.88 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=19.5
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
.....++|.||+|||||+.+-.+-.+
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 34567999999999999877544333
No 376
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=84.84 E-value=0.27 Score=55.26 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=20.6
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..+.++.|+|+.||||||.+=-.
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l 67 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNIL 67 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHH
Confidence 457899999999999999998643
No 377
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=84.64 E-value=0.27 Score=54.34 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=20.6
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..++++.|+|+.||||||.+-..
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l 51 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLL 51 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Confidence 457889999999999999998643
No 378
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=84.59 E-value=0.25 Score=52.22 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=19.8
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
+....++.|+|++||||||..-.+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L 41 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNL 41 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHH
Confidence 445678999999999999988654
No 379
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=84.56 E-value=0.33 Score=55.36 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=16.0
Q ss_pred CCEEEEEcCCCCchhcHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIP 703 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvP 703 (1320)
..+++|+|||||||||..-
T Consensus 3 ~~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHH
Confidence 4588999999999997654
No 380
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=84.55 E-value=0.42 Score=53.60 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
-+.+.-.+..+.+++|.|++||||||.+=++...
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4555556788999999999999999999887654
No 381
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=84.54 E-value=0.54 Score=50.62 Aligned_cols=29 Identities=28% Similarity=0.589 Sum_probs=25.2
Q ss_pred HHHhCCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 681 AVRDHQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 681 ~i~~~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
.+..+.+++|.|++||||||..=|++...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999999999999999998887654
No 382
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=84.48 E-value=1.2 Score=50.90 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=17.0
Q ss_pred EEEEEcCCCCchhcHHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~ 705 (1320)
++.|+|++||||||.+-.+
T Consensus 94 iigI~GpsGSGKSTl~~~L 112 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVL 112 (321)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 8999999999999998544
No 383
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=84.48 E-value=0.35 Score=50.19 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=19.3
Q ss_pred hCCEEEEEcCCCCchhcHHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
.+.+++|+|.+||||||+.-...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 45689999999999999987653
No 384
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=84.45 E-value=0.44 Score=49.26 Aligned_cols=19 Identities=47% Similarity=0.679 Sum_probs=16.5
Q ss_pred EEEEEcCCCCchhcHHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~ 705 (1320)
+++|+|.+||||||+.-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L 20 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKL 20 (195)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999998544
No 385
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=84.39 E-value=0.29 Score=54.04 Aligned_cols=23 Identities=35% Similarity=0.653 Sum_probs=20.1
Q ss_pred HHhCCEEEEEcCCCCchhcHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq 704 (1320)
|..+.++.|+|+.||||||.+=.
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~ 45 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLAR 45 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHH
Confidence 45788999999999999999864
No 386
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=84.39 E-value=0.4 Score=49.11 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=18.1
Q ss_pred CCEEEEEcCCCCchhcHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l 706 (1320)
..+++|+|.+||||||..-..-
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999875543
No 387
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=84.30 E-value=0.54 Score=49.40 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
.+++|+|.+||||||+.-.+--..|
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999765533334
No 388
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=84.18 E-value=0.51 Score=50.23 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 687 VLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
.++|+|.+|||||||.-.+.-..|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999876544344
No 389
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=84.16 E-value=0.72 Score=50.05 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=19.4
Q ss_pred hCCEEEEEcCCCCchhcHHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
...+++|.|+.|||||||+-...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~ 47 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVY 47 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 45689999999999999986553
No 390
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=84.14 E-value=0.41 Score=48.44 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=17.7
Q ss_pred CCEEEEEcCCCCchhcHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~ 705 (1320)
..+.+|+|++||||||.+--+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai 43 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAI 43 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 358999999999999998543
No 391
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=84.10 E-value=0.57 Score=49.99 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
...++|+|.+|||||||.-.+--..|
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999866543333
No 392
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=83.95 E-value=0.54 Score=50.59 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 687 VLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
.++|+|.+|||||||.-.+--..|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999875543333
No 393
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=83.84 E-value=0.3 Score=53.59 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=19.5
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
+.. .++.|+|+.||||||.+-..
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l 44 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELI 44 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHH
T ss_pred ECC-EEEEEECCCCCCHHHHHHHH
Confidence 346 89999999999999998654
No 394
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=83.76 E-value=0.32 Score=56.00 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=17.2
Q ss_pred CCEEEEEcCCCCchhcHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~ 705 (1320)
..+++|+|+|||||||..-..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDL 60 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 458999999999999866543
No 395
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=83.70 E-value=0.55 Score=51.73 Aligned_cols=18 Identities=44% Similarity=0.434 Sum_probs=15.1
Q ss_pred EEEEEcCCCCchhcHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq 704 (1320)
+++|+|+|||||||..-+
T Consensus 3 li~I~G~~GSGKSTla~~ 20 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQ 20 (253)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 689999999999986543
No 396
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=83.70 E-value=0.39 Score=50.58 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=19.4
Q ss_pred HhCCEEEEEcCCCCchhcHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
....+++|+|+.||||||..-..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~L 45 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACAL 45 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 45789999999999999987544
No 397
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=83.53 E-value=0.48 Score=50.66 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
..++|+|++|||||||.-..--..+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999876544433
No 398
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=83.49 E-value=0.58 Score=48.02 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=16.0
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
..+++|+|.+||||||+.-.+--..|
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999865433333
No 399
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=83.49 E-value=0.77 Score=51.61 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
..++||+|++||||||+.-.+.-+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999998876544
No 400
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=83.42 E-value=0.36 Score=51.37 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.0
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
+....+++|+|.+||||||+.-..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l 45 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVEL 45 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHH
Confidence 456678999999999999998654
No 401
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=83.37 E-value=0.54 Score=49.58 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=19.7
Q ss_pred hCCEEEEEcCCCCchhcHHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
...+++|+|..||||||+.-.+-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999987654
No 402
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=83.28 E-value=0.59 Score=48.54 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCchhcHHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
.+++|+|..||||||.+...+-
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999887654
No 403
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=83.12 E-value=0.6 Score=48.65 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
-.+++|+|+.||||||.+...+-.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 468999999999999999877643
No 404
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=83.03 E-value=0.29 Score=55.91 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=20.6
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
+....++.|+|++||||||.+=..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L 110 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVL 110 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHH
Confidence 567789999999999999998544
No 405
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=82.99 E-value=0.61 Score=47.37 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=17.0
Q ss_pred CEEEEEcCCCCchhcHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~ 705 (1320)
.+++|+|.+||||||+.-.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46899999999999987654
No 406
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=82.99 E-value=0.63 Score=55.19 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 673 PFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 673 ~~~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
..++.|-.++....++.|+|++||||||.+=..+
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~ 90 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLR 90 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHH
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHh
Confidence 3455566666777799999999999999997654
No 407
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=82.90 E-value=0.6 Score=53.20 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
-++++..+..+.+++|.|+||+||||..=|+.....
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 356666788999999999999999999999887654
No 408
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=82.81 E-value=0.47 Score=50.05 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=18.4
Q ss_pred CCEEEEEcCCCCchhcHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l 706 (1320)
+.++.|+|++||||||.+-...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~ 22 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHH
Confidence 3578999999999999986543
No 409
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=82.62 E-value=0.49 Score=49.83 Aligned_cols=19 Identities=37% Similarity=0.559 Sum_probs=16.4
Q ss_pred EEEEEcCCCCchhcHHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~ 705 (1320)
++.|+|+.||||||..-.+
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999988544
No 410
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=82.60 E-value=0.37 Score=54.43 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=20.7
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..+.++.|+|+.||||||.+=..
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l 84 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMI 84 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHH
Confidence 457899999999999999998654
No 411
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=82.60 E-value=1.8 Score=54.44 Aligned_cols=55 Identities=25% Similarity=0.341 Sum_probs=41.5
Q ss_pred CCEEEEEcCCCCchhcHHHHH---HHHc-cCCCCCcEEEEecccHHHHHHHHHHHHHHhCC
Q psy1907 685 HQVLIIEGETGSGKTTQIPQY---LHEA-GFTKDKMKIGCTQPRRVAAMSVSARVAEEMGV 741 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~---l~e~-~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~ 741 (1320)
+..++|.|..||||||.+-.- |+.. |.. ..+|+|+-+-+-||..+.+|+...++.
T Consensus 15 ~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~--~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 15 TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQ--ARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCC--GGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCC--HHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 678889999999999998753 3433 432 235777777778899999999987664
No 412
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=82.54 E-value=0.49 Score=50.38 Aligned_cols=20 Identities=30% Similarity=0.503 Sum_probs=17.0
Q ss_pred CCEEEEEcCCCCchhcHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq 704 (1320)
..+++|+|..||||||+.-.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~ 23 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANA 23 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 34789999999999998754
No 413
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=82.50 E-value=1.1 Score=58.19 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=17.5
Q ss_pred CCEEEEEcCCCCchhcHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l 706 (1320)
.+.++|+||+|+||||.+-.+.
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la 212 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLA 212 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHH
Confidence 3468999999999999775543
No 414
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=82.41 E-value=0.46 Score=54.08 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=15.2
Q ss_pred CEEEEEcCCCCchhcHHH
Q psy1907 686 QVLIIEGETGSGKTTQIP 703 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvP 703 (1320)
.+++|+|||||||||..-
T Consensus 11 ~~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCccCHHHHHH
Confidence 478999999999996553
No 415
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=82.37 E-value=0.39 Score=56.31 Aligned_cols=24 Identities=21% Similarity=0.522 Sum_probs=20.6
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..+.++.|.||.||||||.+--.
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~i 49 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMI 49 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHH
T ss_pred ECCCCEEEEEcCCCchHHHHHHHH
Confidence 457889999999999999998644
No 416
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=82.37 E-value=0.74 Score=46.58 Aligned_cols=19 Identities=26% Similarity=0.162 Sum_probs=16.5
Q ss_pred EEEEEcCCCCchhcHHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~ 705 (1320)
.++|+|.+||||||+.-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp EEEEESCTTSCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5899999999999998654
No 417
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=82.34 E-value=0.42 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=19.0
Q ss_pred HHhCCEEEEEcCCCCchhcHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq 704 (1320)
+....++.|+|+.||||||.+=.
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~ 44 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEK 44 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 45677999999999999998753
No 418
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=82.29 E-value=0.39 Score=55.93 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=20.5
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..+.++.|.||.||||||.+=-.
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~i 50 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCL 50 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHHHHHH
Confidence 457889999999999999998643
No 419
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=82.28 E-value=0.66 Score=48.20 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=18.2
Q ss_pred hCCEEEEEcCCCCchhcHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
...+++|+|.+||||||..-.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~L 30 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMI 30 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3568999999999999988543
No 420
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=82.19 E-value=0.56 Score=52.94 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.4
Q ss_pred CCEEEEEcCCCCchhcHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIP 703 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvP 703 (1320)
..++.|+|++||||||..=
T Consensus 31 ~~ii~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSI 49 (290)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4588999999999999864
No 421
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=82.17 E-value=0.64 Score=53.11 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=28.6
Q ss_pred HHHH-HHHHhCCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 676 QDLI-DAVRDHQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 676 ~~il-~~i~~~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
+.++ -.+..+.+++|.|++||||||..-|++...
T Consensus 97 D~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 97 DGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 4555 356788999999999999999999998875
No 422
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=82.07 E-value=0.78 Score=53.13 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=27.9
Q ss_pred HHHHH-HHHhCCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 676 QDLID-AVRDHQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 676 ~~il~-~i~~~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
+.+|. .|..+.++.|.|++||||||.+-|++...
T Consensus 121 D~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 121 DKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44542 46788999999999999999999998764
No 423
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=81.92 E-value=0.7 Score=49.35 Aligned_cols=25 Identities=44% Similarity=0.509 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
..++|.|.+|||||||.-.+--..|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999865533333
No 424
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=81.87 E-value=0.42 Score=49.68 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=18.0
Q ss_pred CEEEEEcCCCCchhcHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l 706 (1320)
+++.|+|++||||||.+-..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999986553
No 425
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=81.75 E-value=0.53 Score=49.43 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=16.3
Q ss_pred EEEEEcCCCCchhcHHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~ 705 (1320)
+++|+|++||||||..-.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L 21 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMF 21 (204)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 6899999999999987543
No 426
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=81.70 E-value=0.43 Score=55.52 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=20.7
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..+.++.|.|+.||||||.+=-.
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~i 61 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLI 61 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHH
T ss_pred ECCCCEEEEECCCCCcHHHHHHHH
Confidence 457899999999999999998643
No 427
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=81.48 E-value=1.3 Score=46.92 Aligned_cols=18 Identities=50% Similarity=0.709 Sum_probs=15.3
Q ss_pred EEEEEcCCCCchhcHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq 704 (1320)
.++|.|.-|||||||+-.
T Consensus 2 fI~~EG~DGsGKsTq~~~ 19 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999999853
No 428
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=81.45 E-value=0.72 Score=52.90 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=17.1
Q ss_pred CEEEEEcCCCCchhcHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~ 705 (1320)
..++|.||+||||||.+=.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~i 71 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHII 71 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 67999999999999887544
No 429
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=81.39 E-value=0.6 Score=50.26 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=17.6
Q ss_pred CCEEEEEcCCCCchhcHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq 704 (1320)
+.+++|.|..|||||||+-.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~ 22 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNV 22 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 56899999999999999853
No 430
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=81.33 E-value=0.55 Score=50.55 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=18.5
Q ss_pred hCCEEEEEcCCCCchhcHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
...+++|.|..|||||||+-..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l 26 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYL 26 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHH
Confidence 3568999999999999998543
No 431
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=81.25 E-value=2.2 Score=53.33 Aligned_cols=55 Identities=20% Similarity=0.141 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchh--cHHHHHHHHccCCCCCcEEEEecccHHHHHHHH
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKT--TQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVS 732 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKT--TqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA 732 (1320)
.+++.+++.++..+++.++||+||| ..+|-..+-.. .+.+|++.-|.+--+..+.
T Consensus 12 ~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~---~~~kvli~t~T~~l~~Qi~ 68 (620)
T 4a15_A 12 IDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE---RKLKVLYLVRTNSQEEQVI 68 (620)
T ss_dssp HHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH---HTCEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh---cCCeEEEECCCHHHHHHHH
Confidence 3567788899999999999999999 45675432110 1235666667666555444
No 432
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=81.17 E-value=0.46 Score=55.30 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=20.6
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..+.++.|.|+.||||||.+--.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~i 49 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLML 49 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHH
T ss_pred EcCCCEEEEEcCCCchHHHHHHHH
Confidence 457889999999999999998643
No 433
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=81.14 E-value=0.46 Score=55.37 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=20.5
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..+.++.|.|+.||||||.+=-.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~i 49 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTI 49 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHH
T ss_pred ECCCCEEEEECCCCchHHHHHHHH
Confidence 457889999999999999998643
No 434
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=81.12 E-value=0.45 Score=52.94 Aligned_cols=23 Identities=43% Similarity=0.564 Sum_probs=19.7
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
+. ++++.|+|+.||||||.+=-.
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l 50 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAI 50 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHH
T ss_pred EC-CEEEEEECCCCCCHHHHHHHH
Confidence 45 789999999999999998643
No 435
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=81.00 E-value=0.83 Score=47.07 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=16.9
Q ss_pred CEEEEEcCCCCchhcHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~ 705 (1320)
.+++|+|.+||||||+--.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46899999999999987544
No 436
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=80.96 E-value=0.42 Score=58.46 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=26.7
Q ss_pred HHHHH-HHHhCCEEEEEcCCCCchhcHHHHHHH
Q psy1907 676 QDLID-AVRDHQVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 676 ~~il~-~i~~~~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
+.|.- .|..+.++.|+|++||||||.+=++++
T Consensus 29 d~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll 61 (525)
T 1tf7_A 29 DDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLY 61 (525)
T ss_dssp HHHTTSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 34444 677899999999999999999999754
No 437
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=80.87 E-value=0.58 Score=50.00 Aligned_cols=19 Identities=47% Similarity=0.695 Sum_probs=16.5
Q ss_pred CEEEEEcCCCCchhcHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq 704 (1320)
..++|.|.-|||||||+-.
T Consensus 3 kFI~~EG~dGsGKsTq~~~ 21 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINE 21 (205)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4688999999999999853
No 438
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=80.78 E-value=0.57 Score=48.87 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=18.6
Q ss_pred CEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
.+++|+|++||||||..-. |.+.|
T Consensus 9 ~~I~i~G~~GsGKST~~~~-La~~g 32 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAAL-LRSWG 32 (203)
T ss_dssp EEEEEEECTTSCHHHHHHH-HHHTT
T ss_pred eEEEEECCCCCCHHHHHHH-HHHCC
Confidence 4788999999999998754 44433
No 439
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=80.74 E-value=0.9 Score=49.05 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
...++|.|.+|||||||.-.+--..+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999876543333
No 440
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=80.61 E-value=0.59 Score=50.86 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=16.3
Q ss_pred HhCCEEEEEcCCCCchhcHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
....+++|.|..|||||||+-..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l 45 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWF 45 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHH
Confidence 35678999999999999998643
No 441
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=80.57 E-value=0.54 Score=54.81 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=17.8
Q ss_pred CCEEEEEcCCCCchhcHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~ 705 (1320)
..+.+|+|+|||||||.+--.
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI 45 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAV 45 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 368999999999999998543
No 442
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=80.57 E-value=0.6 Score=51.96 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=24.3
Q ss_pred HHHHhCCEEEEEcCCCCchhcHHHHHHH
Q psy1907 680 DAVRDHQVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 680 ~~i~~~~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
..+..+.+++|.|++||||||.+=+++.
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3467889999999999999999988764
No 443
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=80.49 E-value=0.5 Score=55.08 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=20.7
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..+.++.|+|+.||||||.+--.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i 74 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCV 74 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHH
T ss_pred EcCCCEEEEEcCCCchHHHHHHHH
Confidence 467899999999999999998643
No 444
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=80.47 E-value=2.2 Score=51.84 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=16.5
Q ss_pred EEEEEcCCCCchhcHHHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l 706 (1320)
-++|.||+||||||.+=.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa 85 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVA 85 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48999999999998875443
No 445
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=80.42 E-value=0.49 Score=55.72 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=20.7
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..+.++.|+|+.||||||.+--.
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~i 67 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAF 67 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCChHHHHHHHH
Confidence 457899999999999999999543
No 446
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=80.37 E-value=0.49 Score=60.66 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=16.7
Q ss_pred CEEEEEcCCCCchhcHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l 706 (1320)
.-+++.||+||||||.+-...
T Consensus 239 ~GILL~GPPGTGKT~LAraiA 259 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 468999999999997765443
No 447
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=80.34 E-value=0.6 Score=47.85 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=16.0
Q ss_pred EEEEEcCCCCchhcHHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~ 705 (1320)
+++|+|++||||||+.-..
T Consensus 6 ~i~i~G~~GsGKsTla~~L 24 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARAL 24 (175)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5889999999999976544
No 448
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=80.26 E-value=0.51 Score=55.23 Aligned_cols=24 Identities=38% Similarity=0.657 Sum_probs=20.5
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..+.++.|.|+.||||||.+=-.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~i 49 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMI 49 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCcHHHHHHHHH
Confidence 457889999999999999998643
No 449
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=80.20 E-value=0.52 Score=55.15 Aligned_cols=24 Identities=33% Similarity=0.657 Sum_probs=20.5
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..+.++.|.|+.||||||.+=-.
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~i 57 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMI 57 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHH
T ss_pred ECCCCEEEEECCCCChHHHHHHHH
Confidence 457889999999999999998643
No 450
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=80.02 E-value=0.96 Score=49.89 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=18.2
Q ss_pred CCEEEEEcCCCCchhcHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l 706 (1320)
..+++|+|.+||||||+.-..-
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La 25 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLA 25 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 3579999999999999986543
No 451
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=79.90 E-value=0.47 Score=49.74 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=18.7
Q ss_pred HhCCEEEEEcCCCCchhcHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
.....++|+|++||||||.+=.+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l 46 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTL 46 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHH
Confidence 34567999999999999988543
No 452
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=79.77 E-value=0.65 Score=53.56 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=14.7
Q ss_pred CEEEEEcCCCCchhcHH
Q psy1907 686 QVLIIEGETGSGKTTQI 702 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqv 702 (1320)
.+++|+|+|||||||..
T Consensus 8 ~lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCcCcHHHHH
Confidence 48999999999999744
No 453
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=79.73 E-value=0.91 Score=53.63 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=28.4
Q ss_pred HHHHH-HHHHhCCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 675 KQDLI-DAVRDHQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 675 ~~~il-~~i~~~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
-+++| -.|....+++|.|++||||||.+-|++...
T Consensus 167 LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 167 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 34455 456789999999999999999999887654
No 454
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=79.65 E-value=0.68 Score=53.95 Aligned_cols=19 Identities=26% Similarity=0.639 Sum_probs=16.6
Q ss_pred CEEEEEcCCCCchhcHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq 704 (1320)
.+.+|+|+|||||||.+--
T Consensus 24 g~~~i~G~NGaGKTTll~a 42 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEA 42 (365)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3788999999999999853
No 455
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=79.61 E-value=0.43 Score=55.36 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=20.5
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..+.++.|.|+.||||||.+=-.
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~i 46 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELI 46 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHH
T ss_pred EcCCCEEEEECCCCccHHHHHHHH
Confidence 457889999999999999998643
No 456
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=79.56 E-value=1.1 Score=49.17 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=21.5
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHHHHccC
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYLHEAGF 711 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l~e~~~ 711 (1320)
....++.|+|++||||||..-...-..|+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 35679999999999999988654333343
No 457
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=79.30 E-value=0.76 Score=49.59 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=18.8
Q ss_pred hCCEEEEEcCCCCchhcHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
...+++|.|..|||||||+-..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l 25 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNIL 25 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999998643
No 458
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.25 E-value=0.86 Score=51.92 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=23.5
Q ss_pred HHHHHHHHHhC--CEEEEEcCCCCchhcHHHHHH
Q psy1907 675 KQDLIDAVRDH--QVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 675 ~~~il~~i~~~--~v~ii~geTGsGKTTqvPq~l 706 (1320)
.+.|..++..+ ..++|.|++|+||||.+=.+.
T Consensus 46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la 79 (353)
T 1sxj_D 46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALT 79 (353)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHH
Confidence 34566666655 459999999999999875543
No 459
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=79.10 E-value=0.9 Score=48.49 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=18.6
Q ss_pred hCCEEEEEcCCCCchhcHHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
....++|+|+|||||||..-.+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999876554
No 460
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=79.08 E-value=1.4 Score=48.07 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=18.8
Q ss_pred hCCEEEEEcCCCCchhcHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
...+++|.|..|||||||+-..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l 47 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVV 47 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999998643
No 461
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=78.77 E-value=1.6 Score=46.38 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
..+++|+|.+||||||.+-+++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998764
No 462
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=78.64 E-value=1.1 Score=62.49 Aligned_cols=64 Identities=20% Similarity=0.181 Sum_probs=43.8
Q ss_pred HHHH--HHHHhCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCCCCCC
Q psy1907 676 QDLI--DAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGC 745 (1320)
Q Consensus 676 ~~il--~~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~~lG~ 745 (1320)
++++ -.+..+.+++|.|++||||||..-||++++.-. +..-+++|-..-+.-+. +..+|..+..
T Consensus 1070 d~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k~-Ge~~~Fit~ee~~~~L~-----a~~~G~dl~~ 1135 (2050)
T 3cmu_A 1070 DIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY-----ARKLGVDIDN 1135 (2050)
T ss_dssp HHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCHHH-----HHHTTCCTTT
T ss_pred HHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEccccHHHHH-----HHHcCCChhH
Confidence 5666 367899999999999999999999999987543 23335665443222222 4456766654
No 463
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=78.57 E-value=0.75 Score=50.70 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=17.5
Q ss_pred hCCEEEEEcCCCCchhcHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIP 703 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvP 703 (1320)
+...++|.|..|||||||.-
T Consensus 23 ~~~~I~ieG~~GsGKST~~~ 42 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVN 42 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 44689999999999999985
No 464
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=78.34 E-value=1.9 Score=52.46 Aligned_cols=56 Identities=23% Similarity=0.216 Sum_probs=37.6
Q ss_pred CEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHHHHHHHHHHHHHHhCC
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGV 741 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRvAA~svA~rva~e~~~ 741 (1320)
.+++|+|.+||||||.+-.+.....-.+....|+..-|.|.+|+.--...+...+.
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i 157 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARI 157 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCc
Confidence 47889999999999999887754332112223566678888886555555555444
No 465
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=78.16 E-value=0.79 Score=51.13 Aligned_cols=20 Identities=25% Similarity=0.584 Sum_probs=17.1
Q ss_pred EEEEEcCCCCchhcHHHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l 706 (1320)
.+.|+|++||||||.+=...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~ 23 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLF 23 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999996554
No 466
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=77.98 E-value=0.82 Score=52.17 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=17.9
Q ss_pred CCEEEEEcCCCCchhcHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~ 705 (1320)
..+.+|+|++||||||.+=-+
T Consensus 24 ~g~~~i~G~NGsGKS~ll~ai 44 (322)
T 1e69_A 24 DRVTAIVGPNGSGKSNIIDAI 44 (322)
T ss_dssp SSEEEEECCTTTCSTHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHH
Confidence 349999999999999998654
No 467
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=77.94 E-value=0.87 Score=48.40 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=17.8
Q ss_pred CCEEEEEcCCCCchhcHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~ 705 (1320)
..+.+|+|++||||||.+--+
T Consensus 23 ~~~~~I~G~NgsGKStil~ai 43 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAI 43 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHH
Confidence 358999999999999998543
No 468
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=77.89 E-value=0.66 Score=57.46 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.5
Q ss_pred HHhCCEEEEEcCCCCchhcHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIP 703 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvP 703 (1320)
+..++++.|+|++||||||.+=
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~ 385 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLIN 385 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHT
T ss_pred ECCCCEEEEECCCCChHHHHHH
Confidence 4578999999999999999984
No 469
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=77.71 E-value=0.44 Score=55.38 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=20.6
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
|..+.++.|.|+.||||||.+--.
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~i 51 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRII 51 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHH
T ss_pred ECCCCEEEEECCCCCcHHHHHHHH
Confidence 457889999999999999998643
No 470
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=77.54 E-value=0.69 Score=57.55 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=20.8
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
+..++++.|+|++||||||.+-..
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l 401 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLL 401 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHH
Confidence 467899999999999999998643
No 471
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=77.19 E-value=1.3 Score=50.10 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCchhcHHHHHHHHcc
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHEAG 710 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e~~ 710 (1320)
++++|.|+.|+||||.+=+++.+.+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 7999999999999999988887653
No 472
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=77.14 E-value=0.73 Score=48.73 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=19.4
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
.|-++.|+|.+||||||..-. |.+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~-L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEI-LKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHH-HHHH
T ss_pred cceEEEEECCCCCCHHHHHHH-HHHh
Confidence 356889999999999998754 4444
No 473
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=77.10 E-value=1.3 Score=50.83 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.7
Q ss_pred CEEEEEcCCCCchhcHH
Q psy1907 686 QVLIIEGETGSGKTTQI 702 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqv 702 (1320)
.+++|+|+|||||||..
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 47999999999999754
No 474
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=76.80 E-value=1.4 Score=48.58 Aligned_cols=22 Identities=32% Similarity=0.302 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCCchhcHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l 706 (1320)
+.+++|+|++||||||..-.+-
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999999876543
No 475
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=76.66 E-value=1.5 Score=50.64 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=29.5
Q ss_pred HHHHHH-HHHhCCEEEEEcCCCCchhcHHHHHHHHccC
Q psy1907 675 KQDLID-AVRDHQVLIIEGETGSGKTTQIPQYLHEAGF 711 (1320)
Q Consensus 675 ~~~il~-~i~~~~v~ii~geTGsGKTTqvPq~l~e~~~ 711 (1320)
-+.++. .+..+.+++|.|++||||||..-|++.....
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~ 148 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQL 148 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 345553 5678899999999999999999999887433
No 476
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=76.65 E-value=0.86 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=19.3
Q ss_pred HhCCEEEEEcCCCCchhcHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
....++.|+|++||||||.+-.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L 100 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVL 100 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
Confidence 45579999999999999998644
No 477
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=76.58 E-value=1.5 Score=50.72 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=16.7
Q ss_pred hCCEEEEEcCCCCchhcHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq 704 (1320)
....+++.|||||||||..-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 346789999999999985543
No 478
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=76.56 E-value=0.92 Score=49.45 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchhcHHHHHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~e 708 (1320)
-++|.|++||||||.+-.+..+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999998655444
No 479
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=76.56 E-value=0.8 Score=56.76 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=21.1
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
+..++++.|+|++||||||.+-..
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l 389 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLF 389 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Confidence 468899999999999999998654
No 480
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=76.44 E-value=1.1 Score=50.02 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=17.7
Q ss_pred CEEEEEcCCCCchhcHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l 706 (1320)
.+++|+|.+||||||+.-.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~ 23 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFI 23 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 378999999999999986543
No 481
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=76.43 E-value=1.2 Score=45.53 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchhcHHHHHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~e 708 (1320)
-++|+|++|+||||.+ ++|..
T Consensus 16 ki~vvG~~~~GKssL~-~~l~~ 36 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNL-KWIYS 36 (198)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHh
Confidence 3789999999999999 88865
No 482
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=76.42 E-value=0.9 Score=49.28 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=16.9
Q ss_pred CEEEEEcCCCCchhcHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~ 705 (1320)
..++|.|..|||||||+-..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l 22 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLL 22 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 46899999999999998543
No 483
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=76.30 E-value=1.3 Score=50.22 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.6
Q ss_pred hCCEEEEEcCCCCchhcHHHHHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
.+.++.|+|++||||||.+=..+
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999997765
No 484
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=76.27 E-value=0.77 Score=56.99 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=20.1
Q ss_pred HHhCCEEEEEcCCCCchhcHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq 704 (1320)
+..++++.|+|++||||||.+-.
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~ 388 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNL 388 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45789999999999999999853
No 485
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=76.24 E-value=0.94 Score=53.39 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=17.1
Q ss_pred cCCCCCChHHHHHHHHHHHHcc
Q psy1907 888 DFLDPPPHETLVLALEQLYALG 909 (1320)
Q Consensus 888 ~fldpP~~~~l~~Ale~L~~Lg 909 (1320)
.-++|-...-|.+|+|....-|
T Consensus 150 ~rihpnd~~Ri~RALEV~~~TG 171 (409)
T 3eph_A 150 TKYHPNDYRRVQRMLEIYYKTG 171 (409)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCcccHHHHHHHHHHHHHHC
Confidence 3466778889999999877766
No 486
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=76.17 E-value=0.76 Score=56.97 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=20.8
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
+..++++.|+|++||||||.+-..
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l 389 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLI 389 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999998654
No 487
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=75.98 E-value=0.82 Score=54.37 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=21.2
Q ss_pred HHHhCCE--EEEEcCCCCchhcHHHHHH
Q psy1907 681 AVRDHQV--LIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 681 ~i~~~~v--~ii~geTGsGKTTqvPq~l 706 (1320)
.+..+.+ +.|+|++||||||.+-..+
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~ 63 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLF 63 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHH
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHh
Confidence 4568888 9999999999999997543
No 488
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=75.91 E-value=0.99 Score=52.88 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.3
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
+..+.+++|.|++||||||.+-...
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999999999987554
No 489
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=75.66 E-value=1.1 Score=53.82 Aligned_cols=35 Identities=11% Similarity=0.230 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
-+.++..+..+.+++|.|++|+||||.+=|+....
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35566668899999999999999999998887654
No 490
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=75.63 E-value=1.4 Score=51.11 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=20.6
Q ss_pred HhCCEEEEEcCCCCchhcHHHHHH
Q psy1907 683 RDHQVLIIEGETGSGKTTQIPQYL 706 (1320)
Q Consensus 683 ~~~~v~ii~geTGsGKTTqvPq~l 706 (1320)
..+.+++|+|++||||||.+-..+
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCccHHHHHHHHh
Confidence 367899999999999999996554
No 491
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=75.62 E-value=1.3 Score=43.72 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchhcHHHHHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~e 708 (1320)
-++|+|++|+||||.+=+++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999888743
No 492
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=75.39 E-value=0.99 Score=51.89 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=17.4
Q ss_pred CCEEEEEcCCCCchhcHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQ 704 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq 704 (1320)
..+.+|+|++||||||.+--
T Consensus 23 ~~~~~i~G~NGsGKS~lleA 42 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDA 42 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46899999999999998854
No 493
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=75.32 E-value=0.81 Score=56.87 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=20.7
Q ss_pred HHhCCEEEEEcCCCCchhcHHHHH
Q psy1907 682 VRDHQVLIIEGETGSGKTTQIPQY 705 (1320)
Q Consensus 682 i~~~~v~ii~geTGsGKTTqvPq~ 705 (1320)
+..++++.|+|++||||||.+-..
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l 390 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLL 390 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999998654
No 494
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=75.30 E-value=1.4 Score=43.87 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=18.3
Q ss_pred EEEEEcCCCCchhcHHHHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~ 707 (1320)
-++|+|++||||||.+=.++.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999988764
No 495
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=75.03 E-value=1.3 Score=43.55 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=18.7
Q ss_pred EEEEEcCCCCchhcHHHHHHHH
Q psy1907 687 VLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 687 v~ii~geTGsGKTTqvPq~l~e 708 (1320)
-++|+|++||||||.+=.++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999877643
No 496
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=74.91 E-value=1.1 Score=49.01 Aligned_cols=17 Identities=29% Similarity=0.433 Sum_probs=14.7
Q ss_pred CEEEEEcCCCCchhcHH
Q psy1907 686 QVLIIEGETGSGKTTQI 702 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqv 702 (1320)
.++.|+|++||||||..
T Consensus 23 ~iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 37899999999999754
No 497
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=74.79 E-value=1.3 Score=52.90 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCEEEEEcCCCCchhcHHHHHHHHc
Q psy1907 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEA 709 (1320)
Q Consensus 675 ~~~il~~i~~~~v~ii~geTGsGKTTqvPq~l~e~ 709 (1320)
-++++..+..+.+++|.|+||+||||..=|+....
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 35666668889999999999999999988877654
No 498
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=74.77 E-value=1.3 Score=48.68 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCCchhcHHHHHHH
Q psy1907 685 HQVLIIEGETGSGKTTQIPQYLH 707 (1320)
Q Consensus 685 ~~v~ii~geTGsGKTTqvPq~l~ 707 (1320)
..+++|+|++||||||+.-...-
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999998766543
No 499
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=74.67 E-value=1.2 Score=52.72 Aligned_cols=41 Identities=17% Similarity=0.286 Sum_probs=28.4
Q ss_pred hCCEEEEEcCCCCchhcHHHHHHHHccCCCCCcEEEEecccHH
Q psy1907 684 DHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRV 726 (1320)
Q Consensus 684 ~~~v~ii~geTGsGKTTqvPq~l~e~~~~~~~~~I~~tQPRRv 726 (1320)
.+.-++|.|+|||||||.+...+...- . .|..++|.=|..=
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~-~-~g~~viv~Dpkge 92 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGL-L-RGDRMVIVDPNGD 92 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHH-H-TTCEEEEEEETTH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHH-H-CCCcEEEEeCCCc
Confidence 356799999999999998866554321 1 2335777777643
No 500
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=74.39 E-value=1.4 Score=45.15 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCchhcHHHHHHHH
Q psy1907 686 QVLIIEGETGSGKTTQIPQYLHE 708 (1320)
Q Consensus 686 ~v~ii~geTGsGKTTqvPq~l~e 708 (1320)
.-++|+|++||||||.+-.++..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999887643
Done!