RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1907
(1320 letters)
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 589 bits (1521), Expect = 0.0
Identities = 159/353 (45%), Positives = 223/353 (63%), Gaps = 11/353 (3%)
Query: 796 VYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGRAGRVAAGKCFRLYTAWAYKHE 855
VYV+DPGF KQ +N R +ESL V PISKASA QRAGRAGR GKCFRLYT A++ E
Sbjct: 389 VYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKE 448
Query: 856 LEDNTVPEIQRINLGNAVLMLKALGINDLIHFDFLDPPPHETLVLALEQLYALGALNHHG 915
L + + PEI R NL + VL LK LGI+DL+HFDF+DPP ET++ ALE+L L L+ G
Sbjct: 449 LIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEG 508
Query: 916 DLTKLGRRMAEFPLDPMMGKMLLASEKYKCVEEIVTIASMLSVNGAIFYRPKDKIIHADT 975
+LT LGR ++FPLDPM+ ML+ S +++C +EI+TI +MLSV +F RP AD
Sbjct: 509 NLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSV-PNVFIRPTKDKKRADD 567
Query: 976 ARKNFFMLGGDHLVLLNIYNQWADADFST----QWCYENFIQHRSMKRARDVREQLIGLV 1031
A+ F GDH+ LLN+Y+ + + +WC ++++ +RS+ A ++R QL L+
Sbjct: 568 AKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLM 627
Query: 1032 QRVEMELVS----NPTETVNIRKAITAGYFYHIAKLSKSG-SYKTAKHNQTVMIHPNSSL 1086
R +EL + +P NIRKA+ +G+F +AK Y T K NQ V+IHP++ L
Sbjct: 628 NRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVL 687
Query: 1087 FEELPRWVLYHELVFTTKEFMRQVTEIESKWLLEVAPHYYKPRELEDSTNKKM 1139
+ WV+Y+E V T+K ++R VT + +WL+E+AP YY + K
Sbjct: 688 GHD-AEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSNFQKGDVKLS 739
Score = 439 bits (1132), Expect = e-138
Identities = 125/236 (52%), Positives = 167/236 (70%), Gaps = 7/236 (2%)
Query: 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL 60
MTDG L RE + + DL+ YS +I+DEAHERTL TDIL GL+K +V+ R DLK++I SATL
Sbjct: 191 MTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATL 250
Query: 61 DAQKFSEFFDDAPVFRIPGRRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFL 120
DA+KF +F+DAP+ +PGR +PV++YYT + DY+D+ + ++LQIHAT+ GDIL+FL
Sbjct: 251 DAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFL 310
Query: 121 TGQEEIETCNEILQDRVRRLGSK--IKELIILPVYSNLPTDMQTKIFLPTPPN-----AR 173
TG++EIE + +L + L + P+Y +LP Q +IF P P + R
Sbjct: 311 TGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGR 370
Query: 174 KVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAG 229
KVV++TNIAETSLTID I+YV+DPGF KQ +N R +ESL V PISKASA QRAG
Sbjct: 371 KVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAG 426
Score = 255 bits (653), Expect = 1e-71
Identities = 76/211 (36%), Positives = 122/211 (57%), Gaps = 17/211 (8%)
Query: 598 EQRKWEDEQMSSAIFRVG---AKDREHQEQYELLLDNQIDFIQALSLPGNRDKGEEEMTE 654
E + + + +K + L+ + +F + L + +++ +
Sbjct: 10 EHPDPVETSIPEQAAEIAEELSKQHPLPSEEPLVHHDAGEF-KGLQRHHTSAEEAQKLED 68
Query: 655 KQ----------KKKLNIEETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQ 704
+ K ++I + ++ LP++ + + + +++Q+++ GETGSGKTTQIPQ
Sbjct: 69 GKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQ 128
Query: 705 YL--HEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSERTI 762
++ E ++ + CTQPRRVAAMSV+ RVAEEM VKLG EVGY+IRFE+ TS +TI
Sbjct: 129 FVLFDEMPHLENTQ-VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTI 187
Query: 763 IKYMTDGTLHREFLSEPDLASYSVMIIDEAH 793
+KYMTDG L RE + + DL+ YS +I+DEAH
Sbjct: 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAH 218
Score = 241 bits (616), Expect = 7e-67
Identities = 59/177 (33%), Positives = 98/177 (55%), Gaps = 10/177 (5%)
Query: 1152 GDHLVLLNIYNQWADADFST----QWCYENFIQHRSMKRARDVREQLIGLVQRVEMELVS 1207
GDH+ LLN+Y+ + + +WC ++++ +RS+ A ++R QL L+ R +EL +
Sbjct: 577 GDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNT 636
Query: 1208 ----NPTETVNIRKAITAGYFYHIAKLSKSG-SYKTAKHNQTVMIHPNSSLFEELPRWVL 1262
+P NIRKA+ +G+F +AK Y T K NQ V+IHP++ L + WV+
Sbjct: 637 TDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLGHD-AEWVI 695
Query: 1263 YHELVFTTKEFMRQVTEIESKWLLEVAPHYYKPRELEDSTNKKMPKTLGKSRAELGE 1319
Y+E V T+K ++R VT + +WL+E+AP YY + K + + + L E
Sbjct: 696 YNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSNFQKGDVKLSLERIKEKVDRLNE 752
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase,
mRNA processing, splicing, nucleotide-binding, nucleus,
phosphoprotein, SPLI; 2.10A {Homo sapiens}
Length = 270
Score = 443 bits (1141), Expect = e-146
Identities = 127/268 (47%), Positives = 175/268 (65%), Gaps = 3/268 (1%)
Query: 879 LGINDLIHFDFLDPP-PHETLVLALEQLYALGALNHHGDLTKLGRRMAEFPLDPMMGKML 937
+G F+ P ETL+ A+EQLY LGAL+ G LT+LGRRMAEFPL+PM+ KML
Sbjct: 1 MGDRGP-EFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKML 59
Query: 938 LASEKYKCVEEIVTIASMLSVNGAIFYRPKDKIIHADTARKNFFMLGGDHLVLLNIYNQW 997
+ S C EE++TI SMLSV +FYRPKDK AD + F GDHL LL +YN W
Sbjct: 60 IMSVHLGCSEEMLTIVSMLSV-QNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW 118
Query: 998 ADADFSTQWCYENFIQHRSMKRARDVREQLIGLVQRVEMELVSNPTETVNIRKAITAGYF 1057
+ FS WCYENFIQ RS++RA+D+R+Q++G++ R ++++VS TV ++KAI +G+F
Sbjct: 119 KNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFF 178
Query: 1058 YHIAKLSKSGSYKTAKHNQTVMIHPNSSLFEELPRWVLYHELVFTTKEFMRQVTEIESKW 1117
+ AK Y+T Q V IHP+S+LF P WV+YHELV TTKE+MR+VT I+ +W
Sbjct: 179 RNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRW 238
Query: 1118 LLEVAPHYYKPRELEDSTNKKMPKTLGK 1145
L+E AP ++K E++ + +
Sbjct: 239 LVEFAPAFFKVLEVDLQGDHGLSAWSHP 266
Score = 274 bits (702), Expect = 7e-84
Identities = 73/161 (45%), Positives = 108/161 (67%)
Query: 1152 GDHLVLLNIYNQWADADFSTQWCYENFIQHRSMKRARDVREQLIGLVQRVEMELVSNPTE 1211
GDHL LL +YN W + FS WCYENFIQ RS++RA+D+R+Q++G++ R ++++VS
Sbjct: 106 GDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKS 165
Query: 1212 TVNIRKAITAGYFYHIAKLSKSGSYKTAKHNQTVMIHPNSSLFEELPRWVLYHELVFTTK 1271
TV ++KAI +G+F + AK Y+T Q V IHP+S+LF P WV+YHELV TTK
Sbjct: 166 TVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTK 225
Query: 1272 EFMRQVTEIESKWLLEVAPHYYKPRELEDSTNKKMPKTLGK 1312
E+MR+VT I+ +WL+E AP ++K E++ + +
Sbjct: 226 EYMREVTTIDPRWLVEFAPAFFKVLEVDLQGDHGLSAWSHP 266
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural
genomics, structural genomics consortium, SGC,
activator, ATP-binding, DNA-binding; HET: ADP; 2.80A
{Homo sapiens}
Length = 235
Score = 233 bits (596), Expect = 6e-70
Identities = 53/156 (33%), Positives = 86/156 (55%), Gaps = 8/156 (5%)
Query: 644 NRDKGEEEMTEKQK--KKLNIEETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQ 701
+ D E M + ++ I + ++ LP+ F+ ++++A+ + V+II G TG GKTTQ
Sbjct: 33 SMDLKNELMYQLEQDHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQ 92
Query: 702 IPQYLHEAGFTKDKM---KIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDC-T 757
+PQ++ + D+ I TQPRR++A+SV+ RVA E G + G GY++RFE
Sbjct: 93 VPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILP 152
Query: 758 SERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAH 793
I + T G L R+ E + S +I+DE H
Sbjct: 153 RPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIH 186
Score = 134 bits (339), Expect = 2e-35
Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL 60
T G L R+ E + S +I+DE HER ++TD L +++D+V+ ++++++ SAT+
Sbjct: 161 CTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATI 218
Query: 61 DAQKFSEFFDDAPVFRI 77
D F E+F + P+ +
Sbjct: 219 DTSMFCEYFFNCPIIEV 235
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 220 bits (561), Expect = 2e-62
Identities = 40/232 (17%), Positives = 67/232 (28%), Gaps = 35/232 (15%)
Query: 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL 60
M TL +S + +Y++ ++DEAH + G + V + + +AT
Sbjct: 95 MCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTAT- 152
Query: 61 DAQKFSEFFDDAPVFRIPGRRFPV-DIYYTKAPEADYIDACVVSILQIHATQPLGDILVF 119
PG P D D I S T+ G + F
Sbjct: 153 ----------------PPGTTDPFPDSNAPIHDLQDEIPDRAWSSGYEWITEYAGKTVWF 196
Query: 120 LTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLAT 179
+ + LQ ++ ++ + + V+ T
Sbjct: 197 VASVKMGNEIAMCLQRAGKK---------VIQLNRKS----YDTEYPKCKNGDWDFVITT 243
Query: 180 NIAETSLTIDNIIYVIDPGFC--KQNNFNSRTGMESLTVVPISKASANQRAG 229
+I+E VID + PI+ ASA QR G
Sbjct: 244 DISEMGANFG-ASRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRG 294
Score = 147 bits (373), Expect = 8e-38
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSAR 734
+ + +R Q+ +++ GSGKT +I + + + +++ P RV A A
Sbjct: 11 GRGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ-RLRTAVLAPTRVVA----AE 65
Query: 735 VAEEMGVKLGCEVGYAIRF-EDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAH 793
+AE + G V Y + I+ M TL +S + +Y++ ++DEAH
Sbjct: 66 MAEALR---GLPVRYQTSAVQREHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAH 122
Score = 130 bits (328), Expect = 5e-32
Identities = 43/228 (18%), Positives = 67/228 (29%), Gaps = 31/228 (13%)
Query: 796 VYVIDPGFC--KQNNFNSRTGMESLTVVPISKASANQRAGRAGRVAAGKCFRLYTAWAYK 853
VID + PI+ ASA QR GR GR + Y Y
Sbjct: 255 SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRN-PNQVGDEY---HYG 310
Query: 854 HELEDNTVPEIQRINLGNAVLMLKALGINDLIHFDFLDPPPHETLVLALEQLYALGALNH 913
++ A +ML + + + + P + + E Y L
Sbjct: 311 GATSEDDSNLAHWT---EAKIMLDNIHMPNGLVAQLYGPEREKAFTMDGE--YRLRG-EE 364
Query: 914 HGDLTKLGRRMAEFPLDPMMGKMLLASEKYKCVEEIVTIASMLSVNGAIFYRPKDKIIHA 973
+ +L R A+ P+ LA YK + F P+ I
Sbjct: 365 KKNFLELLRT-ADLPV-------WLA---YKVASNGIQYTDR----KWCFDGPRTNAILE 409
Query: 974 DTARKNFFMLGGDHLVLLNIYNQWADADF-STQWCYENFIQHRSMKRA 1020
D G+ +L +W DA + + F + KR
Sbjct: 410 DNIEVEIVTRMGERKIL---KPRWLDARVYADHQALKWFKDFAAGKRH 454
Score = 31.3 bits (71), Expect = 2.5
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 1151 GGDHLVLLNIYNQWADADF-STQWCYENFIQHRSMKRA 1187
G+ +L +W DA + + F + KR
Sbjct: 420 MGERKIL---KPRWLDARVYADHQALKWFKDFAAGKRH 454
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 213 bits (543), Expect = 4e-60
Identities = 39/232 (16%), Positives = 70/232 (30%), Gaps = 35/232 (15%)
Query: 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL 60
M T LS + +Y+++++DEAH + G + V + + +AT
Sbjct: 93 MCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRV-EMGEAAAIFMTAT- 150
Query: 61 DAQKFSEFFDDAPVFRIPGRRFPV-DIYYTKAPEADYIDACVVSILQIHATQPLGDILVF 119
PG P I + T G + F
Sbjct: 151 ----------------PPGSTDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWF 194
Query: 120 LTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLAT 179
+ + L+ +R ++ + + T V+ T
Sbjct: 195 VPSIKAGNDIANCLRKSGKR---------VIQLSRKT----FDTEYPKTKLTDWDFVVTT 241
Query: 180 NIAETSLTIDNIIYVIDPGFCKQ--NNFNSRTGMESLTVVPISKASANQRAG 229
+I+E VIDP C + + + +P++ ASA QR G
Sbjct: 242 DISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRG 292
Score = 146 bits (370), Expect = 2e-37
Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 12/130 (9%)
Query: 665 TKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPR 724
+ P Y +D+ R ++ I++ G+GKT +I + + +++ P
Sbjct: 2 SAMGEPDYEVDEDIF---RKKRLTIMDLHPGAGKTKRILPSIVREALLR-RLRTLILAPT 57
Query: 725 RVAAMSVSARVAEEMGVKLGCEVGY-AIRFEDCTSERTIIKYMTDGTLHREFLSEPDLAS 783
RV A + + + Y + + R I+ M T LS + +
Sbjct: 58 RVVAAEMEEALRGL-------PIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPN 110
Query: 784 YSVMIIDEAH 793
Y+++++DEAH
Sbjct: 111 YNLIVMDEAH 120
Score = 91.4 bits (227), Expect = 3e-19
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 796 VYVIDPGFCKQ--NNFNSRTGMESLTVVPISKASANQRAGRAGRVAAGKCFR-LYTAWAY 852
VIDP C + + + +P++ ASA QR GR GR A + + +++
Sbjct: 253 GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPL 312
Query: 853 KHELEDNTVPEIQRI 867
K++ + E + +
Sbjct: 313 KNDEDHAHWTEAKML 327
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase,
ATP-binding, reticulum, nucleotidyltransferase,
multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4}
PDB: 2vbc_A 2wzq_A
Length = 618
Score = 210 bits (536), Expect = 1e-57
Identities = 39/232 (16%), Positives = 70/232 (30%), Gaps = 35/232 (15%)
Query: 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL 60
M T LS + +Y+++++DEAH + G + V + + +AT
Sbjct: 260 MCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRV-EMGEAAAIFMTAT- 317
Query: 61 DAQKFSEFFDDAPVFRIPGRRFPVD-IYYTKAPEADYIDACVVSILQIHATQPLGDILVF 119
PG P I + T G + F
Sbjct: 318 ----------------PPGSTDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWF 361
Query: 120 LTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLAT 179
+ + L+ +R ++ + + T V+ T
Sbjct: 362 VPSIKAGNDIANCLRKSGKR---------VIQLSRKT----FDTEYPKTKLTDWDFVVTT 408
Query: 180 NIAETSLTIDNIIYVIDPGFCKQ--NNFNSRTGMESLTVVPISKASANQRAG 229
+I+E VIDP C + + + +P++ ASA QR G
Sbjct: 409 DISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRG 459
Score = 129 bits (325), Expect = 7e-31
Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 9/131 (6%)
Query: 664 ETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQP 723
T+ P + D R ++ I++ G+GKT +I + + + P
Sbjct: 165 ITQAERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRL-RTLILAP 223
Query: 724 RRVAAMSVSARVAEEMGVKLGCEVGYA-IRFEDCTSERTIIKYMTDGTLHREFLSEPDLA 782
RV A + + + Y + + R I+ M T LS +
Sbjct: 224 TRVVAAEMEEALRGL-------PIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVP 276
Query: 783 SYSVMIIDEAH 793
+Y+++++DEAH
Sbjct: 277 NYNLIVMDEAH 287
Score = 90.4 bits (224), Expect = 1e-18
Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 5/108 (4%)
Query: 796 VYVIDPGFCKQ--NNFNSRTGMESLTVVPISKASANQRAGRAGRVAAGKCFR-LYTAWAY 852
VIDP C + + + +P++ ASA QR GR GR A + + +++
Sbjct: 420 GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPL 479
Query: 853 KHELEDNTVPEIQRINLGN-AVLMLKALGINDLIHFDFLDPPPHETLV 899
K++ + E + + L N + L
Sbjct: 480 KNDEDHAHWTEAK-MLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLR 526
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 203 bits (518), Expect = 4e-57
Identities = 40/230 (17%), Positives = 65/230 (28%), Gaps = 34/230 (14%)
Query: 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL 60
M T + L + +Y++ I+DEAH + G ++ V D + +AT
Sbjct: 76 MCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVS-MGDAGAIFMTATP 134
Query: 61 DAQKFSEFFDDAPVFRIPGRRFPVD-IYYTKAPEADYIDACVVSILQIHATQPLGDILVF 119
PG E I + T+ G + F
Sbjct: 135 -----------------PGTTEAFPPSNSPIIDEETRIPDKAWNSGYEWITEFDGRTVWF 177
Query: 120 LTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLAT 179
+ ++ LQ +L + K V+ T
Sbjct: 178 VHSIKQGAEIGTCLQKA---------GKKVLYLNRKTFESEYPKC----KSEKWDFVITT 224
Query: 180 NIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAG 229
+I+E VIDP + + I+ ASA QR G
Sbjct: 225 DISEMGANFK-ADRVIDPRKT-IKPILLDGRVSMQGPIAITPASAAQRRG 272
Score = 140 bits (355), Expect = 1e-35
Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 7/109 (6%)
Query: 685 HQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLG 744
++ +++ G+GKT ++ L K + P RV A + + E
Sbjct: 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRL-RTVILAPTRVVASEMYEALRGEPIR--- 57
Query: 745 CEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAH 793
+ + I+ +M T + L + +Y++ I+DEAH
Sbjct: 58 ---YMTPAVQSERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAH 103
Score = 135 bits (342), Expect = 5e-34
Identities = 39/227 (17%), Positives = 67/227 (29%), Gaps = 34/227 (14%)
Query: 796 VYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGRAGRVAAG--KCFRLYTAWAYK 853
VIDP + + I+ ASA QR GR GR + Y+
Sbjct: 236 DRVIDPRKT-IKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYA-YSGNVSS 293
Query: 854 HELEDNTVPEIQRINLGNAVLMLKALGINDLIHFDFLDPPPHETLVLALEQLYALGALNH 913
+ E + ++L + + + P +T A E + L
Sbjct: 294 DNEGHVSWTEAR--------MLLDNVHVQGGVVAQLYTPEREKT--EAYEGEFKLKTNQR 343
Query: 914 HGDLTKLGRRMAEFPLDPMMGKMLLASEKYKCVEEIVTIASMLSVNGAIFYRPKDKIIHA 973
+ R + P + LA ++ V F P + ++
Sbjct: 344 KVFSELI--RTGDLP-------VWLA---FQVASANVEYHDR----KWCFDGPNEHLLLE 387
Query: 974 DTARKNFFMLGGDHLVLLNIYNQWADAD-FSTQWCYENFIQHRSMKR 1019
+ + G VL +W D S ++F + S KR
Sbjct: 388 NNQEIEVWTRQGQRRVL---KPRWLDGRITSDHLNLKSFKEFASGKR 431
Score = 38.3 bits (89), Expect = 0.014
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 1151 GGDHLVLLNIYNQWADAD-FSTQWCYENFIQHRSMKR 1186
G VL +W D S ++F + S KR
Sbjct: 398 QGQRRVL---KPRWLDGRITSDHLNLKSFKEFASGKR 431
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3
catalytic subunit; nucleotide-binding, capsid protein;
2.75A {Murray valley encephalitis virus}
Length = 673
Score = 209 bits (534), Expect = 5e-57
Identities = 39/232 (16%), Positives = 66/232 (28%), Gaps = 35/232 (15%)
Query: 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL 60
M TL +S + +Y++ ++DEAH + G + V + + +AT
Sbjct: 315 MCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRV-EAGEAAAIFMTATP 373
Query: 61 DAQKFSEFFDDAPVFRIPGRRFPV-DIYYTKAPEADYIDACVVSILQIHATQPLGDILVF 119
PG P D + I S T G + F
Sbjct: 374 -----------------PGTSDPFPDTNSPVHDVSSEIPDRAWSSGFEWITDYAGKTVWF 416
Query: 120 LTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLAT 179
+ + + LQ +R ++ + + V+ T
Sbjct: 417 VASVKMSNEIAQCLQRAGKR---------VIQLNRKS----YDTEYPKCKNGDWDFVITT 463
Query: 180 NIAETSLTIDNIIYVIDPGFC--KQNNFNSRTGMESLTVVPISKASANQRAG 229
+I+E VID + I+ ASA QR G
Sbjct: 464 DISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRG 514
Score = 125 bits (316), Expect = 1e-29
Identities = 25/139 (17%), Positives = 54/139 (38%), Gaps = 7/139 (5%)
Query: 655 KQKKKLNIEETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKD 714
++ + + + + ++ Q+ +++ G+GKT +I + + K
Sbjct: 211 GNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKR 270
Query: 715 KMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSERTIIKYMTDGTLHRE 774
+ P RV A A +AE + + + S I+ M TL
Sbjct: 271 L-RTAVLAPTRVVA----AEMAEALRGLPVRYLTP--AVQREHSGNEIVDVMCHATLTHR 323
Query: 775 FLSEPDLASYSVMIIDEAH 793
+S + +Y++ ++DEAH
Sbjct: 324 LMSPLRVPNYNLFVMDEAH 342
Score = 121 bits (304), Expect = 4e-28
Identities = 38/225 (16%), Positives = 66/225 (29%), Gaps = 29/225 (12%)
Query: 797 YVIDPGFC--KQNNFNSRTGMESLTVVPISKASANQRAGRAGRVAAGKCFRLYTAWAYKH 854
VID + I+ ASA QR GR GR + + Y
Sbjct: 476 RVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYH----YGG 531
Query: 855 ELEDNTVPEIQRINLGNAVLMLKALGINDLIHFDFLDPPPHETLVLALEQLYALGALNHH 914
++ + A ++L + + + + P +T + E Y L
Sbjct: 532 GTSED--DT-MLAHWTEAKILLDNIHLPNGLVAQLYGPERDKTYTMDGE--YRLRGEERK 586
Query: 915 GDLTKLGRRMAEFPLDPMMGKMLLASEKYKCVEEIVTIASMLSVNGAIFYRPKDKIIHAD 974
L + + A+ P + +AS + + F P+ II D
Sbjct: 587 TFLELI--KTADLP--VWLAYK-VASNGIQYNDRKWC-----------FDGPRSNIILED 630
Query: 975 TARKNFFMLGGDHLVLLNIYNQWADADFSTQWCYENFIQHRSMKR 1019
G+ VL + +S + F + KR
Sbjct: 631 NNEVEIITRIGERKVLKPRW--LDARVYSDHQSLKWFKDFAAGKR 673
Score = 32.2 bits (73), Expect = 1.5
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 1151 GGDHLVLLNIYNQWADADFSTQWCYENFIQHRSMKR 1186
G+ VL + +S + F + KR
Sbjct: 640 IGERKVLKPRW--LDARVYSDHQSLKWFKDFAAGKR 673
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 201 bits (511), Expect = 4e-54
Identities = 47/233 (20%), Positives = 71/233 (30%), Gaps = 41/233 (17%)
Query: 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL 60
T G + +Y ++I DE H T + G V D +++++AT
Sbjct: 303 STYGKFLADGG--CSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATP 360
Query: 61 DAQKFSEFFDDAPVFRIPGRRFPVDI-YYTKAPEADYIDACVVSILQIHATQPLGDILVF 119
P +I +Y KA + I G L+F
Sbjct: 361 PG----SVTVPHPNIEEVALSNTGEIPFYGKAIPIEAIRG--------------GRHLIF 402
Query: 120 LTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLAT 179
+++ L +K+ L I V D+ P VV+AT
Sbjct: 403 CHSKKKC-----------DELAAKLSGLGINAVAYYRGLDVS-----VIPTIGDVVVVAT 446
Query: 180 NIAETSLTIDNIIYVIDPGFCKQNNFNSRTGME---SLTVVPISKASANQRAG 229
+ T T D VID C + T VP S +QR G
Sbjct: 447 DALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRG 498
Score = 137 bits (346), Expect = 2e-33
Identities = 28/157 (17%), Positives = 51/157 (32%), Gaps = 12/157 (7%)
Query: 637 QALSLPGNRDKGEEEMTEKQKKKLNIEETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGS 696
A+ + + ET P++ + QV + TGS
Sbjct: 184 HAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGS 243
Query: 697 GKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDC 756
GK+T++P G K+ P A + A +++ G+ + +R
Sbjct: 244 GKSTKVPAAYAAQG-----YKVLVLNPSVAATLGFGAYMSKAHGIDPN--IRTGVRTITT 296
Query: 757 TSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAH 793
+ Y T G + +Y ++I DE H
Sbjct: 297 G---APVTYSTYGKFLADGG--CSGGAYDIIICDECH 328
Score = 89.3 bits (221), Expect = 4e-18
Identities = 28/140 (20%), Positives = 44/140 (31%), Gaps = 9/140 (6%)
Query: 796 VYVIDPGFCKQNNFNSRTGME---SLTVVPISKASANQRAGRAGRVAAGKCFRLYTAWAY 852
VID C + T VP S +QR GR GR G +
Sbjct: 458 DSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERP 517
Query: 853 KHELEDNTVPEIQRINLGNAVLMLKALGINDLIHFDFLDPPPHETLVLALEQLYALGALN 912
+ + + E + G A L + + +L+ P LE ++
Sbjct: 518 SGMFDSSVLCEC--YDAGCAWYELTPAETSVRLRA-YLNTPGLPVCQDHLEFWESVFTGL 574
Query: 913 HHGD---LTKLGRRMAEFPL 929
H D L++ + FP
Sbjct: 575 THIDAHFLSQTKQAGDNFPY 594
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 195 bits (496), Expect = 4e-54
Identities = 36/231 (15%), Positives = 65/231 (28%), Gaps = 34/231 (14%)
Query: 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL 60
M TL L + ++ V+I+DEAH + G R ++ ++ +AT
Sbjct: 82 MCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATP 140
Query: 61 DAQKFSEFFDDAPVFRIPGRRFPVDI-YYTKAPEADYIDACVVSILQIHATQPLGDILVF 119
PG I + + F
Sbjct: 141 -----------------PGTSDEFPHSNGEIEDVQTDIPSEPWNTGHDWILADKRPTAWF 183
Query: 120 LTGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLAT 179
L L+ + ++ + + + +LAT
Sbjct: 184 LPSIRAANVMAASLRKAGKS---------VVVLNRKT---FEREY-PTIKQKKPDFILAT 230
Query: 180 NIAETSLTIDNIIYVIDPGFC-KQNNFNSRTGMESLTVVPISKASANQRAG 229
+IAE + + V+D K + + + IS +SA QR G
Sbjct: 231 DIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRG 280
Score = 123 bits (309), Expect = 1e-29
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 9/115 (7%)
Query: 680 DAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEM 739
++ +++ G+GKT + + + + P RV +
Sbjct: 3 HMLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRL-RTLVLAPTRVVLSEMKEAFH--- 58
Query: 740 GVKLGCEVGYAIR-FEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAH 793
G +V + + F S R +I M TL L + ++ V+I+DEAH
Sbjct: 59 ----GLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAH 109
Score = 74.9 bits (184), Expect = 5e-14
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 797 YVIDPGFC-KQNNFNSRTGMESLTVVPISKASANQRAGRAGRVAAGKCFRLYTAWAYKHE 855
V+D K + + + IS +SA QR GR GR + Y E
Sbjct: 243 RVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGR-NPNRDGDSYYYSEPTSE 301
Query: 856 LEDNTV--PEIQRI 867
+ V E +
Sbjct: 302 NNAHHVCWLEASML 315
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 78.4 bits (192), Expect = 1e-14
Identities = 91/636 (14%), Positives = 194/636 (30%), Gaps = 131/636 (20%)
Query: 544 ERRDREHK-RKLLELAKEHDKARELEKVQRYYMPKGTKGPEKYEEVDEKEKVPHYEQRK- 601
E + +++ + +L + ++ + + K EE+D
Sbjct: 10 ETGEHQYQYKDILSVFED-AFVDNFDC---KDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 602 ---WEDEQMSSAIFRVGAKDREHQEQYELLLDNQIDFIQALSLPGNRDKGEEEMTEKQKK 658
W + + ++ + Y+ L+ + + M +Q+
Sbjct: 66 RLFWTLLSKQEEMVQKFVEE-VLRINYKFLMS-------PIKTEQRQPSMMTRMYIEQRD 117
Query: 659 KL---NIEETKKSLPIYPFKQDLIDAV---RDHQVLIIEGETGSGKTTQIPQYLHEAGFT 712
+L N K ++ L A+ R + ++I+G GSGKT
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 713 KDK------MKIG-CTQPRRVAAM--SVSARVAEEMGVKLGCEVGYAIRFEDCTSERTII 763
+ + C P V M + ++ + +R +E
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL--- 234
Query: 764 KYMTDGTLHREFLSEPDLASYSVMIIDE-AHPKVYVIDPGF---CK-------QNNFNSR 812
R L + ++++ + K + F CK + +
Sbjct: 235 ---------RRLLKSKPYEN-CLLVLLNVQNAK--AWNA-FNLSCKILLTTRFKQVTDFL 281
Query: 813 TGMESLTVVPISKASANQRAGRAGRVAAGKCFRLYTAWAYKHELEDNTVP-EIQRIN-LG 870
+ + T + + S + + L + + +P E+ N
Sbjct: 282 SAATT-THISLDHHSMT--------LTPDEVKSLLLKYL---DCRPQDLPREVLTTNPR- 328
Query: 871 NAVLMLKALGINDLIHFDFLDPPPHETLVLALEQLYALGALNHHGDLTKLGRRMAEFPLD 930
+ ++ + L +D + L +E +L L + K+ R++ FP
Sbjct: 329 -RLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNVLE-PAEYRKMFDRLSVFPPS 384
Query: 931 ---PMMG-KMLLASEKYKCVEEIVTIASMLSVNGAIFYRPKDKI-----IHADTARK--N 979
P + ++ V +V L + +PK+ I+ + K N
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVN---KLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 980 FFMLGGDHLVLLNIYN---QWADADFSTQWCYENFIQH--RSMKRARDVREQLIGLVQRV 1034
+ L H +++ YN + D + + F H +K + + L + V
Sbjct: 442 EYAL---HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE--HPERMTLFRMV 496
Query: 1035 EMEL--VSNPTETVNIRKAITA--GYFYHIAKLSKSGSYKTAKHNQTVMIHPNSSLFEEL 1090
++ + IR TA + L + YK + I N +E
Sbjct: 497 FLDFRFLEQ-----KIRHDSTAWNASGSILNTLQQLKFYK--PY-----ICDNDPKYE-- 542
Query: 1091 PRWVLYHELVFTTKEFMRQVTE--IESKW--LLEVA 1122
LV +F+ ++ E I SK+ LL +A
Sbjct: 543 -------RLVNAILDFLPKIEENLICSKYTDLLRIA 571
Score = 74.1 bits (181), Expect = 2e-13
Identities = 102/719 (14%), Positives = 198/719 (27%), Gaps = 268/719 (37%)
Query: 479 DKRAYEEAAKRLKLEAESRDKIIPKLRIESRRKYL----EKRKEDKVAELEADILDDEYL 534
D + ++ K + L E D II S L ++E+ V + ++L Y
Sbjct: 34 DCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 535 FSEQELTER---ERRDREHKRKLLELAKEHDKA-RELEKVQRYYMPKGTKGPEKYEEVDE 590
F L E+R ++ ++ D+ + + +Y + + + Y ++
Sbjct: 93 F----LMSPIKTEQRQPSMMTRMYI--EQRDRLYNDNQVFAKYNVSR----LQPYLKL-- 140
Query: 591 KEKVPHYEQR--------------KW-----------EDEQMSSAIF--RVGAKDREHQE 623
++ + E R K +M IF + +
Sbjct: 141 RQAL--LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP--- 195
Query: 624 QYELLLDNQIDFIQALS--LPGNRDKGEEEMTEKQKKKLNIEETKKSLPIY----PFKQD 677
E +L+ Q L + N + KL I + L P++
Sbjct: 196 --ETVLEML----QKLLYQIDPNWTSRSDHS---SNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 678 LI--DAVRDH----------QVLIIEGET---------GSGKTTQIPQYLHEAGFTKDKM 716
L+ V++ ++L+ T + TT I H T D+
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLT---TRFKQVTDFLSAATTTHISLDHHSMTLTPDE- 302
Query: 717 KIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSE----RTIIKYMTDGTLH 772
S+ + L C + E T+ I + + DG
Sbjct: 303 -----------VKSLLLKY-------LDCRPQ-DLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 773 REFLSEPDLASYSVMI---IDEAHPKVYVIDPGFCKQNNFNSRTGMESLTV----VPISK 825
+ + + +I ++ P Y + F + L+V I
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEY--------RKMF------DRLSVFPPSAHIPT 389
Query: 826 ASANQRAGRAGRVAAGKCFRLYTAWAYKHELEDNTVPEIQRIN-LGNAVLMLK-----AL 879
L W ++ + V + +N L L+ K +
Sbjct: 390 I------------------LLSLIWF---DVIKSDVMVV--VNKLHKYSLVEKQPKESTI 426
Query: 880 GINDLIHFDFLDPPP-----HETLV-------------LALEQL--YALGALNHHGDLTK 919
I + + + H ++V L L Y + HH +
Sbjct: 427 SIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 920 LGRRMAEFP---LDPMMGKMLLASEKYKCVEEIVTIASMLSVNGAIFYRPKDKIIHADTA 976
RM F LD ++ +E+ KI H TA
Sbjct: 486 HPERMTLFRMVFLD------------FRFLEQ--------------------KIRHDSTA 513
Query: 977 RKNFFMLGGDHLVLLNIYNQWADADFSTQWCYENFIQHRSMKRARDVREQLIGLVQRVEM 1036
G L L Y+ +I K R V ++ + ++E
Sbjct: 514 WNA----SGSILNTLQ--------QLKF---YKPYICDNDPKYERLVNA-ILDFLPKIEE 557
Query: 1037 ELVSNP-TETVNIRKAITAGYFYHIAKLSKSGSYKTAKHNQTVMIHPNSSLFEELPRWV 1094
L+ + T+ + + ++ + ++FEE + V
Sbjct: 558 NLICSKYTDLL-----------------------------RIALMAEDEAIFEEAHKQV 587
Score = 62.2 bits (150), Expect = 1e-09
Identities = 80/553 (14%), Positives = 152/553 (27%), Gaps = 184/553 (33%)
Query: 846 LYTAWAYKHELEDNTVPEI----QRINLGNAVLMLKALGINDLIHFDFLDPPPHETLVLA 901
L + E ++ QR L N + ++ P+ L A
Sbjct: 94 LMSPIKT--EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR--------LQPYLKLRQA 143
Query: 902 LEQLYALGALNHHGDLTKLGRRMAEFPLDPMMGKMLLASE-------------------- 941
L +L + G + GK +A +
Sbjct: 144 LLELRPAKNVLIDG--------VLGS------GKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 942 -KYKCVEEIV--------TIASMLSVNGAIFYRPKDKIIHADTARKNFFMLGGDH----L 988
E ++ I + K +I H+ A + + L
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKPYENCLL 248
Query: 989 VLLNIYNQWADADFSTQWCYENFIQHRSM--KRARDVREQLIGL-VQRVEMELVS---NP 1042
VLLN+ N A F+ C + + R + V + L + ++ S P
Sbjct: 249 VLLNVQNAKAWNAFNLS-C-------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 1043 TETVNIRKAITAGYFYH-IAKLSKSGSYKTAKHNQTVMIHPNS-SLF-----EELPRW-- 1093
E K++ Y L + + + +P S+ + L W
Sbjct: 301 DEV----KSLLLKYLDCRPQDLPR----------EVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 1094 ---VLYHELVFTTKEFMRQVTEIESKWLLEVAPHYYKPREL----EDSTNKKMPKTLGKS 1146
V +L + + + E + + L + +P L
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYR-------KMFD--RLSVFPPSA---HIPTIL--- 391
Query: 1147 RAELGGDHLVLLNIYNQWADADFSTQWCYENFIQHRSM--KRARDVREQLIGLVQRVEME 1204
L L+ W D S N + S+ K+ ++ + + ++++
Sbjct: 392 --------LSLI-----WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 1205 LVSNPT------ETVNIRKA---------ITAGYF-----YHIAKLSKSGSYKT------ 1238
L + + NI K YF +H+ +
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 1239 ------AK--HNQTVMIHPNS--SLFEELPRW--------VLYHELVFTTKEFMRQVTE- 1279
K H+ T S + ++L + Y LV +F+ ++ E
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 1280 -IESKW--LLEVA 1289
I SK+ LL +A
Sbjct: 559 LICSKYTDLLRIA 571
Score = 59.1 bits (142), Expect = 1e-08
Identities = 68/454 (14%), Positives = 148/454 (32%), Gaps = 85/454 (18%)
Query: 80 RRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDRVRR 139
+ I++ + + V+ +LQ Q + I+ +Q +RR
Sbjct: 178 CKMDFKIFWLNLKNCNSPET-VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 140 LGSKIKE------LIIL-PVYSNLPT-----DMQTKIFLPTPPNARKVVLATNIAETS-L 186
L +K L++L V + ++ KI L T ++V + A T+ +
Sbjct: 237 L---LKSKPYENCLLVLLNVQN--AKAWNAFNLSCKILLTT--RFKQVTDFLSAATTTHI 289
Query: 187 TIDNIIYVIDPGFCKQNN---FNSRTGM-------ESLTVVP--ISKASANQRAGVITGF 234
++D+ E LT P +S + + R G+ T
Sbjct: 290 SLDHH----SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-- 343
Query: 235 NPLSDFRGCAHVLGEEVLRGCAHVLGEEVLRPEVSQPFRSFGYLGVMQDCRYIGTYLVGF 294
+++ HV +++ L VL P + + F L V +I T L+
Sbjct: 344 --WDNWK---HVNCDKLTTIIESSL--NVLEPAEYR--KMFDRLSVFPPSAHIPTILLSL 394
Query: 295 IWHWKNHYIQDQTLVTFMLTHLPTTYIKRKSSEYKVGNGEDSFCVSPLYNLTIQSSSFQS 354
IW + L ++++ E + + ++ +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSL----VEKQPKESTIS----------IPSI------YLE 434
Query: 355 ITIQCFASLQLHHPVIQLFTILPSSSTSSRLFTTLPSSLAA-VPHHIQRQSPAQSYHRMT 413
+ ++ LH ++ + I + + + L + + HH++ +
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 414 PGCTD--------RRTQSPCPSCLKVFKTPKVRAFMGHFLTDSDD--DRKERD--EF--- 458
D R + + + T + F ++ D+D +R +F
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 459 -SERLKNRDKNNTKNVATSRQDKRAYEEAAKRLK 491
E L + +A +D+ +EEA K+++
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 56.0 bits (134), Expect = 9e-08
Identities = 81/653 (12%), Positives = 160/653 (24%), Gaps = 240/653 (36%)
Query: 177 LATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGVITGFNP 236
+ E +I+ V + F
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVD----------------------------------- 31
Query: 237 LSDFRGCAHVLGEEVLRG------CAHVLGEEVLRPEVSQPFRSFGYLGVMQDC---RYI 287
+F C V +++ + H++ + VS R F L Q+ +++
Sbjct: 32 --NF-DCKDV--QDMPKSILSKEEIDHIIMS---KDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 288 GTYL---VGFIWH-WKNHYIQDQTLVTFMLTHLPTTYIKRKSSEYKVGNGEDSFCVSPLY 343
L F+ K Q +++T YI+++ Y N F Y
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQ-PSMMT-------RMYIEQRDRLY---NDNQVF---AKY 129
Query: 344 NLTIQSSSFQSITIQCFASLQLHHPVIQLF-------TILPSSSTSSRLFTTLPSSLAAV 396
N++ + + Q L+ + + T + S
Sbjct: 130 NVSRL-QPYLKLR-QALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM------ 180
Query: 397 PHHI------QRQSPA------QS-YHRMTPGCTDRRTQS-PCPSCLKVFKTPKVRAFMG 442
I SP Q +++ P T R S + + R
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 443 HFLTDS----DD--DRKERDEFSERLK----NRDKNNTKNVATSRQDKRAYEEAAKRLKL 492
+ + + K + F+ K R K T ++ + + + + L
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-T 299
Query: 493 EAESRD------------------KIIP--------KLRIE-SRRKYLEKRKEDKVAE-- 523
E + P +R + + DK+
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 524 ------LEADILDDEY----LFSE-------------QELTERERRD---REHKRKLLE- 556
LE + +F ++ + + + HK L+E
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 557 ---------------LAKEHDKARELEK--VQRYYMPKGT-------------------- 579
L + + L + V Y +PK
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 580 --KGPEKYEEVDEKEKVP---HYEQRK-------WEDEQMSSAIFRVGAKDREH----QE 623
K E E + V + ++K W + + +
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 624 QYELLLDNQIDFIQ-----------------ALSLPGNRDKGEEEMTEKQKKK 659
+YE L++ +DF+ AL D+ E KQ ++
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALM---AEDEAIFEEAHKQVQR 589
Score = 44.1 bits (103), Expect = 4e-04
Identities = 49/367 (13%), Positives = 117/367 (31%), Gaps = 81/367 (22%)
Query: 1001 DFST---QWCYENFIQH--RSMKR---ARDVREQLIGLVQRVEM-ELVSNPTETVNIRKA 1051
DF T Q+ Y++ + + +DV++ ++ + E+ ++ + +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 1052 I-------TAGYFYHIAKLSKSGSYK---TAKHNQTVMIHPNSSLFEELPRWVLYHELVF 1101
+ ++ + +YK + + + ++ E R LY++
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRI-NYKFLMSPIKTEQRQPSMMTRMYIE-QRDRLYNDNQV 125
Query: 1102 TTKEFM---RQVTEIESKWLLEVAPHYYKPRELEDSTNKKMPKTLGKS--RAELGGDHLV 1156
K + + ++ + LLE+ P + + GK+ ++ + V
Sbjct: 126 FAKYNVSRLQPYLKLR-QALLELRPAKN-------VLIDGVLGS-GKTWVALDVCLSYKV 176
Query: 1157 LLNIYNQWADADFSTQWCYENFIQHRSMKRARDVREQLIGLVQRVEMELVSNPTETVNIR 1216
+ DF W + ++ V E L L+ +++ S + NI+
Sbjct: 177 QCKM-------DFKIFW-----LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 1217 KAITAGYFYHIAKLSKSGSYKTA----------KH----N---QTVMIHPNSSLFEELPR 1259
I + + +L KS Y+ K N + ++ + + L
Sbjct: 225 LRIHSIQ-AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 1260 WVLYH------ELVFTTKEFMRQVTEIESKWLLEVAPHYYKPRELEDSTNKKMPKTLGKS 1313
H + T E + K+L +P++L P+ L
Sbjct: 284 ATTTHISLDHHSMTLTPDEVK----SLLLKYLDC------RPQDLPREVLTTNPRRLSII 333
Query: 1314 RAELGEH 1320
+ +
Sbjct: 334 AESIRDG 340
Score = 30.2 bits (67), Expect = 5.5
Identities = 23/178 (12%), Positives = 52/178 (29%), Gaps = 50/178 (28%)
Query: 1096 YHELVFTTKEFMRQVTEIESKWLLEVAPHYYKP-------RELEDS-----TNKKMPKTL 1143
+H + F T E Q +I + ++++D + +++ +
Sbjct: 4 HHHMDFETGEHQYQYKDI--------LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII 55
Query: 1144 GKSRAELGGDHL--VLL----NIYNQW------ADADF-STQWCYENFIQHRSMKRARDV 1190
A G L LL + ++ + F + E + +
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 1191 REQLIGLVQRVEMELVSNPTETVNIRKAITAGYFYHIAKLSKSGSYKTAKHNQTVMIH 1248
R++L Q VS + +R+A+ + + V+I
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQAL-----------------LELRPAKNVLID 156
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.5 bits (159), Expect = 1e-10
Identities = 105/636 (16%), Positives = 183/636 (28%), Gaps = 235/636 (36%)
Query: 362 SLQLHHPVIQLFTIL-PSSS--TSSRL---FT-TLPSSLAAVPHHIQRQSPAQSYHRMTP 414
L L H ++ +L P++S +S+L F LP + +PA+ +
Sbjct: 8 PLTLSHGSLE-HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 415 GCTDRRTQSPCPSCLKVFKTPKVRAFMGHFLTDSDDDRKERDEFSERLKNRD-------- 466
+ S +V + + F E + L+ D
Sbjct: 67 YVSSLVEPSKVGQFDQV-----LNLCLTEF---------ENC-Y---LEGNDIHALAAKL 108
Query: 467 -KNNTKNVATSRQDKRAYEEAAKRLKLEAESRDKIIPKLRIESRRKYLEKRKEDKVAELE 525
+ N + +++ + Y A K + K + S L + + A+L
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAK-------RPFDK-KSNSA---LFRAVGEGNAQLV 157
Query: 526 ADIL-----DDEYLFSE-QELTERER---RD--REHKRKLLELAKEHDKARELEKVQRYY 574
A I D+Y F E ++L + D + L EL + A ++ +
Sbjct: 158 A-IFGGQGNTDDY-FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA------EKVF 209
Query: 575 MPKGT------KGPEKYEEVDEKEKVP------------HY------------EQRK--- 601
+G + P + D +P HY E R
Sbjct: 210 -TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 602 --------------------WED--EQMSSAI---FRVGAKDREHQE--QYELLLDNQID 634
WE + AI F +G R ++ L D
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV--RCYEAYPNTSLPPSILED 326
Query: 635 FIQA--------LSLPGNRDKGEEEMTEKQKKKLNIEETKKSLPIYPFKQD---LIDAVR 683
++ LS+ +T++Q + + +T LP KQ L++
Sbjct: 327 SLENNEGVPSPMLSISN--------LTQEQVQDY-VNKTNSHLP--AGKQVEISLVNG-A 374
Query: 684 DHQVLIIEGETGSGKTTQIPQYLHEAGFT----KDKMKIGCTQPR-----RVAAMS---- 730
+ V+ +G PQ L+ G K K G Q R R S
Sbjct: 375 KNLVV-----SGP------PQSLY--GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Query: 731 -VSA-------RVAEEMGVKLGCEVGYAIRFEDCTSERTIIKYMT-DGTLHREFLSE--P 779
V++ A ++ K + + +D I Y T DG+ R
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI----QIPVYDTFDGSDLRVLSGSISE 477
Query: 780 DLASYSVMII------DEAHPKV--YVID--PGFCKQNNFNSRTGMESLTVVPISKASAN 829
+ II + +++D PG +G+ LT
Sbjct: 478 RIVD---CIIRLPVKWETTTQFKATHILDFGPG--------GASGLGVLT--------HR 518
Query: 830 QRAGRAGRV-AAGKCFRLYTAWAYKHELEDNTVPEI 864
+ G RV AG L+ N +
Sbjct: 519 NKDGTGVRVIVAG-------------TLDINPDDDY 541
Score = 51.2 bits (122), Expect = 3e-06
Identities = 59/374 (15%), Positives = 114/374 (30%), Gaps = 133/374 (35%)
Query: 30 RTLHTDILFGLVKDIVRFRSDLKLLISSATLDAQK-FSEFFDDAPVFRIPGRRFPVDIYY 88
R L+ LV D+++F ++ + TLDA+K F++ + P
Sbjct: 174 RDLY-QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT------- 225
Query: 89 TKAPEADYIDACVVSILQIHATQ--------------P--LGDILVFLTGQEE------- 125
P+ DY+ + +S I Q P L L TG +
Sbjct: 226 ---PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 126 IETCN------EILQDRVRRL---GSKIKELIILPVYSNLPTDMQTKIF----LPTP--- 169
I + ++ + L G + E P S P+ ++ + +P+P
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEA--YPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 170 -PNARKVVLATNIAET--SLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVV---PIS--- 220
N + + + +T L + + + N + VV P S
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEI--------SLVNGAKNL----VVSGPPQSLYG 388
Query: 221 --------KASAN---------QRAGVI-TGFNPLSD-FRGCAHVLGEEVLRGCAHVLGE 261
KA + +R F P++ F H +L + ++ +
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF----H---SHLLVPASDLINK 441
Query: 262 EVLRPEVSQPFRSFGYLGV----------MQD---------CRYIGTYLVGFIWHWKNHY 302
++++ VS F + + + ++ I V W
Sbjct: 442 DLVKNNVS--FNA-KDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV----KW---- 490
Query: 303 IQDQTLVTFMLTHL 316
+T F TH+
Sbjct: 491 ---ETTTQFKATHI 501
Score = 49.7 bits (118), Expect = 8e-06
Identities = 82/457 (17%), Positives = 141/457 (30%), Gaps = 159/457 (34%)
Query: 594 VP-----HYEQRKWEDEQMSSAI---FRVGAKDREHQEQYELLLDNQIDFIQALSLPGNR 645
VP Q + EQ + + A D E EL+ + ++ +L P
Sbjct: 22 VPTASFFIASQLQ---EQFNKILPEPTEGFAADDEPTTPAELVGK-FLGYVSSLVEPSKV 77
Query: 646 DKGEEEMTEKQKKKLNIEETKKSLPIYPFKQDLIDAVRD-HQV---LIIEGETGSGKTTQ 701
+ ++ + L + E F+ ++ D H + L+ E +T KT +
Sbjct: 78 GQFDQVL------NLCLTE---------FENCYLEG-NDIHALAAKLLQENDTTLVKTKE 121
Query: 702 IPQ-YLHEAGFTKDKMKIGCTQPRRVAAMSVSA--RVAEEMGVKLGCEVGYAIRF----- 753
+ + Y+ K R S SA R E +L AI F
Sbjct: 122 LIKNYITARIMAK----------RPFDKKSNSALFRAVGEGNAQL-----VAI-FGGQGN 165
Query: 754 -EDCTSE-RTIIKYMTDGTLHREFL--SEPDLASYSVMIIDEAHPKVY--VIDPGFCKQ- 806
+D E R + Y T L + + S L+ +D KV+ ++ +
Sbjct: 166 TDDYFEELRDL--YQTYHVLVGDLIKFSAETLSELIRTTLDA--EKVFTQGLNI---LEW 218
Query: 807 -NNFNSRTGMESLTVVPISKASANQRAGRAGRVAAGKCFRLYTAWAYKHELEDNTVPEIQ 865
N ++ + L +PIS P I
Sbjct: 219 LENPSNTPDKDYLLSIPIS------------------------------------CPLIG 242
Query: 866 RINLGNAVLMLKALGINDLIHFDFLDPPP----H-ETLVLAL--------EQLY--ALGA 910
I L + V+ K LG + H + LV A+ E + A
Sbjct: 243 VIQLAHYVVTAKLLGFT---PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 911 LNHHGDLTKLGRRMAE-FP---LDPMMGKMLLASEKYKCVEEIVTIAS-MLSVNG----- 960
+ L +G R E +P L P + + +E + S MLS++
Sbjct: 300 ITV---LFFIGVRCYEAYPNTSLPPSILE--------DSLENNEGVPSPMLSISNLTQEQ 348
Query: 961 ---AIF----YRPKDKIIHADTARKNFFMLGGDHLVL 990
+ + P K + + N G +LV+
Sbjct: 349 VQDYVNKTNSHLPAGKQVEI--SLVN----GAKNLVV 379
Score = 42.3 bits (99), Expect = 0.001
Identities = 87/609 (14%), Positives = 168/609 (27%), Gaps = 230/609 (37%)
Query: 2 TDG-TLHREFLSEPDL-ASYSVMIID--EAHERTLHTDILFGLVKDIVR-F--RSDLKLL 54
T+G E + +L + + E + +L + + + +D+ L
Sbjct: 45 TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 55 ISSATLDAQKFSEFFDDAPVFRIPGRRFPVDIYY-----TKAPEADYIDACVVSILQIHA 109
A L + +D + + + + Y K P D S L
Sbjct: 105 A--AKLLQE------NDTTLVK---TKELIKNYITARIMAKRP----FDKKSNSALFRAV 149
Query: 110 TQPLGDILVFLT--GQEEIETC-NEILQDRVRRLGSKIKELIIL--PVYSNLPTDMQTKI 164
+ G+ + GQ + E L+D + + +LI S L
Sbjct: 150 GE--GNAQLVAIFGGQGNTDDYFEE-LRDLYQTYHVLVGDLIKFSAETLSEL-------- 198
Query: 165 FLPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLTVVPISKASA 224
+ T +A KV + ++ + ++ +P ++ + L +PIS
Sbjct: 199 -IRTTLDAEKVF--------TQGLNILEWLENP--------SNTPDKDYLLSIPIS---- 237
Query: 225 NQRAGVITGFNPLSDFRGCAHVLGEEVLRGCAHVLGEEVLRP-EVSQPFRSFGYLGVMQD 283
PL AH + V A +LG P E+ + G G Q
Sbjct: 238 ---------C-PLIGVIQLAHYV---VT---AKLLG---FTPGELRSYLK--GATGHSQG 276
Query: 284 CRYIGTYLVG--FIWH---WKNHYIQDQTLVTFML-----THL--PTTYIKRKSSEYKVG 331
LV I W++ ++ + +T + + P T + E +
Sbjct: 277 -------LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 332 NGEDSFCVSPLYNLTIQSSSFQSITIQCFASLQLHHPVIQLFTILPSSST-------SSR 384
N E SP+ L+I + + + Q+ V + + LP+ ++
Sbjct: 330 NNEGV--PSPM--LSISNLTQE----------QVQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 385 LF--TTLPSSLAAVPHHIQRQSPAQSYHRMTPGCTDRRTQSPCPSCLKVFKTPKVRAFMG 442
+ P SL + +++ PS L + P
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAK--------------------APSGLDQSRIP------- 408
Query: 443 HFLTDSDDDRKERDEFSERLKNRDKNNTKNVATSRQDKRAYEEAAKRLKLEAESRDKIIP 502
FSER
Sbjct: 409 ---------------FSER----------------------------------------- 412
Query: 503 KLRIESR---------RKYLEKRKEDKVAELEADILDDEYLFSEQEL------TERERRD 547
KL+ +R L + D++ + F+ +++ T
Sbjct: 413 KLKFSNRFLPVASPFHSHLLV----PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL 468
Query: 548 REHKRKLLE 556
R + E
Sbjct: 469 RVLSGSISE 477
Score = 39.3 bits (91), Expect = 0.012
Identities = 34/164 (20%), Positives = 53/164 (32%), Gaps = 52/164 (31%)
Query: 1175 YENFIQHRSMKRARDVREQ------------LIGLVQRVEMELVSNPTE-TVNIR----K 1217
Y+ K A+DV + ++ +V +NP T++ K
Sbjct: 1636 YKTS------KAAQDVWNRADNHFKDTYGFSILDIVI-------NNPVNLTIHFGGEKGK 1682
Query: 1218 AITAGYFYHIAKLSKSGSYKTAKHNQTVMIHPNSSLFEELPRWVLYH-ELVFTTKEFMRQ 1276
I Y I + G KT K + + H S F + +L + FT Q
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS-EKGLLSATQ--FT------Q 1733
Query: 1277 VTEIESKWLLEVAPHYYKPRELEDSTNKKMPKTL-GKSRAELGE 1319
+ L+E A +L+ T G S LGE
Sbjct: 1734 PA-L---TLMEKAAF----EDLKSKGLIPADATFAGHS---LGE 1766
Score = 38.9 bits (90), Expect = 0.015
Identities = 41/197 (20%), Positives = 61/197 (30%), Gaps = 67/197 (34%)
Query: 88 YTKAPEA----DYIDACVV-----SILQIHATQPLGDILVFLTGQEEIETCNEILQDRVR 138
Y + A + D SIL I P+ + F G++
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHF-GGEK-------------- 1680
Query: 139 RLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVIDPG 198
G +I+E YS M + + K+ N TS T
Sbjct: 1681 --GKRIREN-----YS----AMIFETIVDGKLKTEKIFKEINEHSTSYT----------- 1718
Query: 199 FCKQNNFNSRTGMESLTVV--P----ISKASAN--QRAGVITGFNPLSDFRGCAHVLGE- 249
F S G+ S T P + KA+ + G+I + F G H LGE
Sbjct: 1719 ------FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLI---PADATFAG--HSLGEY 1767
Query: 250 EVLRGCAHVLG-EEVLR 265
L A V+ E ++
Sbjct: 1768 AALASLADVMSIESLVE 1784
Score = 38.5 bits (89), Expect = 0.019
Identities = 70/463 (15%), Positives = 128/463 (27%), Gaps = 178/463 (38%)
Query: 844 FRLYTAWAYKHELEDNTVPEIQRINLGNAVLMLKALGINDLIHF--DFL---DPPPHETL 898
F Y + +E + V + ++ L L F +L D H L
Sbjct: 64 FLGYVS----SLVEPSKVGQFDQV--------LNLC----LTEFENCYLEGNDI--H-AL 104
Query: 899 VLALEQLYALGALNHHGDLTK---LGRRMAEFPLDPMMGKMLLAS--------------- 940
L Q + +L K R MA+ P D L +
Sbjct: 105 AAKLLQENDTTLVKTK-ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 941 ---EKYKCVEEIVTIASMLSVNGAIFYRP--KDKIIHADTARKNFFMLGGDHLVLLNIYN 995
+ Y EE+ + Y D I + + L L ++
Sbjct: 164 GNTDDY--FEELRDLYQT--------YHVLVGDLI---KFSAETLSELIRTTLDAEKVFT 210
Query: 996 QWADADFSTQWCYENFIQHRSMKRARD------VREQLIGLVQRVEMELVS-----NPTE 1044
Q + +W +++ S +D + LIG++Q + + P E
Sbjct: 211 QGLNI---LEW-----LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 1045 TVNIRKAITAGYFYHIAKL------SKSGSYKTAKHNQTVMIHPNSSLFEELPRWVLYHE 1098
+ K T H L +++ S+++ F R +
Sbjct: 263 LRSYLKGATG----HSQGLVTAVAIAETDSWES---------------FFVSVRKAI--T 301
Query: 1099 LVFTTKEFMRQVTEIESKWL----LEVAPHYY-KPRELEDST--NKKMP----------- 1140
++F ++ E P+ P LEDS N+ +P
Sbjct: 302 VLF---------------FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 1141 ----KTLGKSRAELGGDHLVLLNIYNQWADADFSTQWCYENFIQHRSMKRARDV---REQ 1193
+ K+ + L V +++ N + N + V +
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVN-------GAK----NLV----------VSGPPQS 385
Query: 1194 LIGLVQRVEMELVSNPTETVNI----RKAITAGYF------YH 1226
L GL + + + I RK + F +H
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Score = 36.6 bits (84), Expect = 0.071
Identities = 54/289 (18%), Positives = 79/289 (27%), Gaps = 132/289 (45%)
Query: 513 LEKRKEDKVA-EL--EAD-ILDDEYLFSEQ--------ELT-----ERERRDREHKRKLL 555
++ K K A ++ AD D Y FS LT E+ +R RE+ ++
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 556 ELAKEHDKARELEKVQRYYMPKGTKGPEKYEEVDEKEKVPHYEQRKWEDE--------Q- 606
D + EK+ ++E++E + E Q
Sbjct: 1693 -FETIVDGKLKTEKI--------------FKEINEHSTSYTFRS---EKGLLSATQFTQP 1734
Query: 607 ----MSSAIFRV----GAKDREHQEQYELLLDNQIDFIQA-LSLPGNRDKGEEEMTEKQK 657
M A F G D A SL GE
Sbjct: 1735 ALTLMEKAAFEDLKSKGLI--------------PADATFAGHSL------GE-------- 1766
Query: 658 KKLNIEETKKSLPIY----------PFKQDLIDAV--RDHQVLIIEGETGSGKTTQ--IP 703
Y + L++ V R G T Q +P
Sbjct: 1767 --------------YAALASLADVMSI-ESLVEVVFYR-------------GMTMQVAVP 1798
Query: 704 QYLHEAGFTKDKMKIGCTQPRRVAA---MSVSARVAEEMGVKLG--CEV 747
+ E G + M I P RVAA V E +G + G E+
Sbjct: 1799 R--DELGRSNYGM-IAIN-PGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Score = 34.3 bits (78), Expect = 0.33
Identities = 33/163 (20%), Positives = 52/163 (31%), Gaps = 52/163 (31%)
Query: 1008 YENFIQHRSMKRARDVREQ------------LIGLVQRVEMELVSNPTE-TVNIR----K 1050
Y+ K A+DV + ++ +V +NP T++ K
Sbjct: 1636 YKTS------KAAQDVWNRADNHFKDTYGFSILDIVI-------NNPVNLTIHFGGEKGK 1682
Query: 1051 AITAGYFYHIAKLSKSGSYKTAKHNQTVMIHPNSSLFEELPRWVLYH-ELVFTTKEFMRQ 1109
I Y I + G KT K + + H S F + +L + FT Q
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS-EKGLLSATQ--FT------Q 1733
Query: 1110 VTEIESKWLLEVAPHYYKPRELEDSTNKKMPKTL-GKSRAELG 1151
+ L+E A +L+ T G S LG
Sbjct: 1734 PA-L---TLMEKAAF----EDLKSKGLIPADATFAGHS---LG 1765
Score = 31.9 bits (72), Expect = 1.7
Identities = 53/279 (18%), Positives = 82/279 (29%), Gaps = 75/279 (26%)
Query: 1082 PNSSLF--EELPRWVLYHELVFTTKEFMRQVTEIESKWLLEVAPHY--YKPRELEDSTNK 1137
P +S F +L + L T+ F E + E+ + Y +E S
Sbjct: 23 PTASFFIASQL-QEQFNKILPEPTEGFAAD-DEPTTP--AELVGKFLGYVSSLVEPSKVG 78
Query: 1138 KMPKTLGKS-----RAELGGD--HLVLLNIYNQWADADFSTQWCYENFIQHRSMKRARDV 1190
+ + L L G+ H + + + T+ +N+I R M +
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 1191 REQLIGLVQRVEMELVSNPTETVNIRKAITAG------YFYHIAKLSKSGSYKTAKHNQT 1244
++ L + V + AI G YF + L Y+T
Sbjct: 139 KKSNSALFRAVG-------EGNAQL-VAIFGGQGNTDDYFEELRDL-----YQTYHVLVG 185
Query: 1245 VMIHPNSSLFEELPRWVLYHELVFTTKEFMRQVTEIESKWL-----------LEVAP--- 1290
+I ++ EL R L E VFT Q I WL L P
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFT------QGLNILE-WLENPSNTPDKDYLLSIPISC 238
Query: 1291 ---------HYYKPRELEDSTNKKMPKTLGKSRAELGEH 1320
HY K LG + EL +
Sbjct: 239 PLIGVIQLAHYV-----------VTAKLLGFTPGELRSY 266
Score = 29.6 bits (66), Expect = 9.5
Identities = 16/76 (21%), Positives = 20/76 (26%), Gaps = 21/76 (27%)
Query: 7 HREFLSE------PDLASYSVMI------------IDEAHERTLHTDILFGLVKDIVRFR 48
H L DL +V D + R L I +V I+R
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Query: 49 SD-LKLLISSAT--LD 61
AT LD
Sbjct: 488 VKWETTTQFKATHILD 503
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 50.5 bits (120), Expect = 6e-07
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 452 RKERDEFSERLKNRDKNNTKNVATSRQDKRAYEEAAKRLKLEAESRDKIIPKLRIESRRK 511
RK R+E +RL+ D A+ ++ E+A K L+ + + + ++E +
Sbjct: 88 RKWREEQRKRLQELDA------ASKVMEQEWREKAKKDLEEWNQRQSE-----QVEKNKI 136
Query: 512 YLEKRKEDK--VAELEADIL 529
R DK + +ADI+
Sbjct: 137 --NNRIADKAFYQQPDADII 154
Score = 47.5 bits (112), Expect = 5e-06
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 16/82 (19%)
Query: 486 AAKRLKLEAESRDKIIPKLRIESRRKYLEKRKED---KVAELEADILDDEYLFSEQELTE 542
A RL E ES I K R E +RK L++ E ++++L E
Sbjct: 76 QADRLTQEPES----IRKWR-EEQRKRLQELDAASKVMEQEWREK--------AKKDLEE 122
Query: 543 RERRDREHKRKLLELAKEHDKA 564
+R E K + DKA
Sbjct: 123 WNQRQSEQVEKNKINNRIADKA 144
Score = 43.2 bits (101), Expect = 1e-04
Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 29/107 (27%)
Query: 582 PEKYEEVDEKEKVPHYEQRKWEDEQMSSAIFRVGAKDREHQEQYELLLDNQIDFIQALSL 641
++ + E E + RKW +EQ R+ D + + + ++
Sbjct: 77 ADRLTQ--EPESI-----RKWREEQRK----RLQELDAASKVMEQEWREKAKKDLE---- 121
Query: 642 PGNRDKGEEEMTEKQKKKLNIEETKKSLPIYPFKQDLIDAVRDHQVL 688
++ + E EK K I + F Q D ++
Sbjct: 122 --EWNQRQSEQVEKNKINNRIADKA-------FYQQ-----PDADII 154
Score = 39.0 bits (90), Expect = 0.004
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 26/88 (29%)
Query: 525 EADILDDEYLFSEQELTERERRDR-------EHKRKLLELAKEHDKARELEKVQRYYMPK 577
+AD L E E RE + + K E ++ K +LE+ +
Sbjct: 76 QADRLTQE---PESIRKWREEQRKRLQELDAASKVMEQEWREKAKK--DLEE---WN--- 124
Query: 578 GTKGPEKYEEVDEKEKVPHYEQRKWEDE 605
++ E EK K+ R +
Sbjct: 125 -----QRQSEQVEKNKI---NNRIADKA 144
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 44.1 bits (104), Expect = 4e-04
Identities = 40/234 (17%), Positives = 96/234 (41%), Gaps = 18/234 (7%)
Query: 445 LTDSDDDRKERDEFSERLKNRDKNNTKNVATSRQDKRAYEEAAKRLKLEAESRDKIIPKL 504
++++ R + L+ + + + + K+++ + ++ + +
Sbjct: 908 YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE 967
Query: 505 RIESRRKYLEKRK---EDKVAELEADILDDEYLFSEQELTERERRDREHKRKLLELAKEH 561
E+ R+ L+ K + K+ ++E DIL E ++ ER+ + LA+E
Sbjct: 968 --EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLT-KERKLLEERVSDLTTNLAEEE 1024
Query: 562 DKARELEKVQRYYMPKGTKGPEKYEEVDEKEKVPHYE----QRKWEDEQMSSAIFRVGAK 617
+KA+ L K++ K + E +KE+ E +RK E E S ++ A+
Sbjct: 1025 EKAKNLTKLKN----KHESMISELEVRLKKEEKSRQELEKIKRKLEGE-SSDLHEQI-AE 1078
Query: 618 DREHQEQYELLLDNQIDFIQALSLPGNRDKGEEEMTEKQKKKLN--IEETKKSL 669
+ + + L + + +QA + ++ K+ ++L I + ++ L
Sbjct: 1079 LQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDL 1132
Score = 43.7 bits (103), Expect = 5e-04
Identities = 46/236 (19%), Positives = 86/236 (36%), Gaps = 44/236 (18%)
Query: 452 RKERDEFSERLKNRDKNNTKNVATSRQDKRAYEEAAKRLKLEAESRDKIIPKLRIESRRK 511
+K + + + L+ + + + +K + K+++ + + KL RK
Sbjct: 951 KKMQQQMLD-LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKL--TKERK 1007
Query: 512 YLEKR----------KEDKVAELEADILDDEYLFSE-QELTERERRDRE----HKRKLL- 555
LE+R +E+K L E + SE + ++E + R+ KRKL
Sbjct: 1008 LLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEG 1067
Query: 556 ELAKEHDKARELEKVQRYYMPKGTKGPEKYEEVDEKEKVPHYEQRKWEDEQMSSAIFRVG 615
E + H++ EL+ E ++ +KE+ + EDE
Sbjct: 1068 ESSDLHEQIAELQAQIA----------ELKAQLAKKEEELQAALARLEDETSQKNNAL-- 1115
Query: 616 AKDREHQEQYELLLDNQIDFIQALSLPGNRDKGEEEMTEKQKKKLN--IEETKKSL 669
K RE + L ++ +K EKQK+ L+ +E K L
Sbjct: 1116 KKIRELESHISDLQEDL-----------ESEKAARNKAEKQKRDLSEELEALKTEL 1160
Score = 37.9 bits (88), Expect = 0.024
Identities = 28/221 (12%), Positives = 72/221 (32%), Gaps = 14/221 (6%)
Query: 454 ERDEFSERLKNRDKNNTKNVATSRQDKRAYEEAAKRLKLEAESRDKIIPKLRIESRRKYL 513
+ V ++ +A +E +R K + + + +L + +
Sbjct: 833 NVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCE 892
Query: 514 EKRKEDKVAELEADILDDEYLFSEQELT---ERERRDREHKRKLLELAKEHDKARELEKV 570
EK + + E ++ + + E E E + ++ E + + + +K
Sbjct: 893 EKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKK 952
Query: 571 QRYYMPKGTKGPEKYEEVDEKEKVPHYEQRKWEDEQMSSAIFRVGAKDREHQEQYELLLD 630
+ M + E+ E +K + ++ D ++ + + ++ + L
Sbjct: 953 MQQQMLDLEEQLEEEEAARQKLQ----LEKVTADGKIKKMEDDILIMEDQNNK-----LT 1003
Query: 631 NQIDFIQAL--SLPGNRDKGEEEMTEKQKKKLNIEETKKSL 669
+ ++ L N + EE+ K K E L
Sbjct: 1004 KERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISEL 1044
Score = 34.8 bits (80), Expect = 0.22
Identities = 29/132 (21%), Positives = 62/132 (46%), Gaps = 4/132 (3%)
Query: 445 LTDSDDDRKERDEFSERLKNRDKNNTKNVATS-RQDKRAYEEAAKRL-KLEAESRDKIIP 502
LT + + +E+ + +LKN+ ++ + ++++++ +E K KLE ES D
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075
Query: 503 KLRIESRRKYLEKRKEDKVAELEADILDDEYLFSEQELTERERRDREHKRKLL--ELAKE 560
++++ L+ + K EL+A + E S++ ++ R+ E L +L E
Sbjct: 1076 IAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESE 1135
Query: 561 HDKARELEKVQR 572
+ EK +R
Sbjct: 1136 KAARNKAEKQKR 1147
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 37.8 bits (87), Expect = 0.011
Identities = 31/176 (17%), Positives = 58/176 (32%), Gaps = 14/176 (7%)
Query: 449 DDDRKERDEFSERLKNRDKNNTKNVATSRQDKRAYEEAAKRLKLEAESRDKIIPKLRIES 508
+ R E EF E + + + + Q R + +RLK E E+ + + +S
Sbjct: 27 QEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQS 86
Query: 509 RRKYLEKRKEDKVAELEADILDDEYLFSEQELTERERRDREHKRKLLELAKEHDKARELE 568
++ + + L EQ + ER R L + + ++A E
Sbjct: 87 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERN 146
Query: 569 KVQRYYMPKGTKGPEKYEEVDEKEKVPHYEQR-KWEDEQMSSAIFRVGAKDREHQE 623
E+DEKE + QR K E + + + ++
Sbjct: 147 AFLE-------------SELDEKESLLVSVQRLKDEARDLRQELAVRERQQEVTRK 189
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 38.9 bits (91), Expect = 0.013
Identities = 28/187 (14%), Positives = 70/187 (37%), Gaps = 18/187 (9%)
Query: 455 RDEFSERLKNRDKNNTKNVATSRQDKRAYEEAAKRLKLEAESRDKIIPKLRIESRRKYLE 514
R ++R + K ++V ++ E +L+ + + ++K L + LE
Sbjct: 898 RRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSL--LEKMNNLE 955
Query: 515 KRKEDKVAELEADILDDEYLFSEQELTERERRDREHKRKLLE---------LAKEHDKAR 565
+ +L +D+ ++E E ++ ++ L+ L + + +
Sbjct: 956 ITYSTETEKLRSDV-------ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK 1008
Query: 566 ELEKVQRYYMPKGTKGPEKYEEVDEKEKVPHYEQRKWEDEQMSSAIFRVGAKDREHQEQY 625
+E+ Y + + + +E + K E + +Q + K E +Q
Sbjct: 1009 TIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQL 1068
Query: 626 ELLLDNQ 632
EL L+++
Sbjct: 1069 ELDLNDE 1075
Score = 35.1 bits (81), Expect = 0.18
Identities = 37/246 (15%), Positives = 79/246 (32%), Gaps = 34/246 (13%)
Query: 458 FSERLKNRDKNNTKNVATSRQDKRAYEEAAKRLKLEAESRDKIIPKLRIESRRKYLEKRK 517
+ R K + ++ R + + + ++ + + ++
Sbjct: 852 YLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAI-------VYLQCCYRRMMAKR 904
Query: 518 EDKVAELEADILDDEYLFS---EQELTERERRDREHKRKLLELAKEHDKARELEKVQRYY 574
E K ++EA ++ E ++ + +R+ E + E +K LE
Sbjct: 905 ELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNK---EYKSLLEKMNNLEITYSTE 961
Query: 575 MPKGTKGPEKYEEVDEKEKVPHYEQRKWEDE---------QMSSAIFRVGAKDREHQEQY 625
K E+ +E+ K ++E Q + + +++ +
Sbjct: 962 TEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET 1021
Query: 626 ELLLDNQIDFIQAL-----SLPGNRDKGEEEMTEKQKKKLNIEETKKSLPIYPFKQDLID 680
E L+ + L L +E+TE +KKL E K L + DL D
Sbjct: 1022 EQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKL--VEETKQL-----ELDLND 1074
Query: 681 AVRDHQ 686
+Q
Sbjct: 1075 ERLRYQ 1080
Score = 33.9 bits (78), Expect = 0.39
Identities = 17/115 (14%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 452 RKERDEFSERLKNRDKNNTKNVATSRQDKRAYEEAAKRLKLEAESRDKIIPKLRIESRRK 511
+ + +++ + + S ++ + L+ E K + + ++ +K
Sbjct: 951 MNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQT--QTEKK 1008
Query: 512 YLEKRKEDKVAELEADILDDEYLFSEQELTERERRDREHKRKLLELAKEHDKARE 566
+E+ + E E L E +++ T + E R++ + AKE + E
Sbjct: 1009 TIEEWADKYKHETEQ--LVSEL---KEQNTLLKTEKEELNRRIHDQAKEITETME 1058
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 38.5 bits (90), Expect = 0.020
Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 15/135 (11%)
Query: 452 RKERDEFSERLKNRDKNNTKNVATSRQDKRAY-----EEAAKRLKLEAESRDKIIPKL-- 504
K E +E L+ K K ++ R K + L + I +
Sbjct: 864 EKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQA 923
Query: 505 ---RIESRRKYLEKRKEDKVAELEADILDDEYLFSE--QELTERERRDREHKRKLLELAK 559
+E+ + + ++L + + L ELTER+ + ++ +
Sbjct: 924 KLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSA 983
Query: 560 EH---DKARELEKVQ 571
E ELE++Q
Sbjct: 984 ETYKNTLLAELERLQ 998
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 37.5 bits (88), Expect = 0.032
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 20/104 (19%)
Query: 485 EAAKRLKLEAESR----DKI---IPKLRIESRRKYLEKRKE----DKVAELEADI--LDD 531
EAA RL++ ES D + +L IE R+ L+K K+ +++ +EA+I L +
Sbjct: 387 EAAARLRMALESAPEEIDALERKKLQLEIE--REALKKEKDPDSQERLKAIEAEIAKLTE 444
Query: 532 EYLFSEQELTERERRDREHKRKLLELAKEHDKAR-ELEKVQRYY 574
E +L R+RE RKL E D+ R E+E +R Y
Sbjct: 445 EI----AKLRAEWEREREILRKLREAQHRLDEVRREIELAERQY 484
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 36.2 bits (83), Expect = 0.037
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Query: 248 GEEVLRGCAHVLGEEVL--RPEVSQPFRSF 275
G+ V C VL ++++ R E +R+F
Sbjct: 41 GDVVCALCGLVLSDKLVDTRSE----WRTF 66
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 35.1 bits (80), Expect = 0.11
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 13/53 (24%)
Query: 483 YEEAAKRLKLEAESRDKIIPKLRIESRRKYLE-KRKEDKVAELEADILDDEYL 534
Y K ++++ + K+ P +RI S LE + K ++L
Sbjct: 124 YSSEVKENSVDSDDKAKVPPLIRIVS---GLELSDTKQK---------GKKFL 164
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 35.8 bits (82), Expect = 0.12
Identities = 25/175 (14%), Positives = 56/175 (32%), Gaps = 15/175 (8%)
Query: 506 IESRRKYLEKRKED--KVAELEADILDDEYLFSEQELTERERRDREHKRKLLELAKEHDK 563
R +Y +KRK+ + + E + + F + + + + + +++ +
Sbjct: 578 YYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELEN--- 634
Query: 564 ARELEKVQRYYMPKGTKGPEKYEEVDEKEKVPHYEQRKWEDEQMSSAIFRVGAKDREHQE 623
+ + P ++ E K + ++E V E
Sbjct: 635 -LGFPRFNKEGKPYYGSPNDEIAEQINDVKGA--TSDEEDEESSHEDTENVINGPEELYG 691
Query: 624 QYELLLDNQIDFIQALSLPGNRDKGEEEMTEKQKKKLNIEETKKSLPIYPFKQDL 678
YE LL +I + K ++ EK+ + +E K + DL
Sbjct: 692 TYEYLLGMRIWSLTKE----RYQKLLKQKQEKETE---LENLLKLSAKDIWNTDL 739
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 35.2 bits (81), Expect = 0.13
Identities = 27/182 (14%), Positives = 59/182 (32%), Gaps = 19/182 (10%)
Query: 444 FLTDSDDDRKERDEFSERLKNRDKNNTKNVATSRQDKRAYEEAAKRLKLEAESRDKIIP- 502
F + ++ + R+ S R + N K AT+ + I
Sbjct: 75 FEVNGNNYKIIREYDSGRGGAKLYKNGKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQ 134
Query: 503 -------KLRIESRRKYLEK-------RKEDKVAELEADILDDEYLFSEQELTERERRDR 548
L+ + + + K K + + E EL +E +
Sbjct: 135 GEIAKFLSLKPSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLK 194
Query: 549 EHKRKLLELAKEHDKARE----LEKVQRYYMPKGTKGPEKYEEVDEKEKVPHYEQRKWED 604
+++ L KE +K + L+KV+R + G + + + V +K + +++
Sbjct: 195 ARLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDL 254
Query: 605 EQ 606
Sbjct: 255 PY 256
Score = 31.0 bits (70), Expect = 3.1
Identities = 21/144 (14%), Positives = 42/144 (29%), Gaps = 15/144 (10%)
Query: 442 GHFLTDSDDDRKERDE-------------FSERLKNRDKNNTKNVATSRQDKRAYEEAAK 488
G E+ E +++ K K + + EE+ K
Sbjct: 135 GEIAKFLSLKPSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLK 194
Query: 489 RLKLEAESRDKIIPKLRIESRRKYLEKRKEDKVAELEADILDDEYLFSEQELTERERRDR 548
E + +K KL +YL+K + L ++Y+ Q+ +
Sbjct: 195 ARLKEMSNLEKEKEKL--TKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEF 252
Query: 549 EHKRKLLELAKEHDKARELEKVQR 572
+ +EL K+ +
Sbjct: 253 DLPYSFVELTKDFEVRVHAPNGVL 276
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 35.1 bits (81), Expect = 0.14
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 678 LIDAVRDHQVLIIEGETGSGKTT 700
+ D + + +I+ G TGSGKTT
Sbjct: 164 IKDGIAIGKNVIVCGGTGSGKTT 186
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell
adhesion; NMR {Homo sapiens} PDB: 2p03_A
Length = 323
Score = 34.7 bits (79), Expect = 0.16
Identities = 37/238 (15%), Positives = 78/238 (32%), Gaps = 30/238 (12%)
Query: 451 DRKERDEFSERLKNRDKN--NTKNVATSRQDKRAYEEAAKRLKLEAESRDKIIPKLRIES 508
E LK ++++ K + D+ +EA L I+ K ++
Sbjct: 38 PPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEARLIRNLN-----VILAKYGLD- 91
Query: 509 RRKYLEKRKEDKVAELEADILDDEYL------------FSEQELTERERRDREHKRKLLE 556
+K + + ++ + D LDD L FS +EL + R HK K+ E
Sbjct: 92 GKKDARQVTSNSLSGTQEDGLDDPRLEKLWHKAKTSGKFSGEELDKLWREFLHHKEKVHE 151
Query: 557 LAKEHDKARELEKVQRYYMPKGTKGPEKYEEVDEKEKVPHYEQRKWEDEQMSSAIFRVGA 616
+ E++ + P ++ + + K + ++ + R+
Sbjct: 152 YNVLLETLSRTEEIH-----ENVISPSDLSDIKGSVLHSRHTELKEKLRSINQGLDRLRR 206
Query: 617 KDREHQEQYELLLDNQIDFIQALSLPGNRDKGE-----EEMTEKQKKKLNIEETKKSL 669
+ + ++ + L+ N E EE+ + K +K L
Sbjct: 207 VSHQGYSTEAEFEEPRVIDLWDLAQSANLTDKELEAFREELKHFEAKIEKHNHYQKQL 264
Score = 32.4 bits (73), Expect = 1.1
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 10/164 (6%)
Query: 457 EFSERLKNRDKNNTKNVATSRQDKRAYEEAAKRLKLEAESRDKIIPKLRIESRRKYLEKR 516
E R + +N S LK + S ++ + +LR S + Y +
Sbjct: 157 ETLSRTEEIHENVISPSDLSDIKGSVLHSRHTELKEKLRSINQGLDRLRRVSHQGYSTEA 216
Query: 517 --KEDKVAELEADILDDEYLFSE-----QELTERERRDREHKRKLLELAKEHDKARELEK 569
+E +V +L E +EL E + +H +L H+K R E
Sbjct: 217 EFEEPRVIDLWDLAQSANLTDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAES 276
Query: 570 VQRYYMPKGTKGPEKYEEVDEKEKVPHYEQRKWEDEQMSSAIFR 613
V + ++ EK+ ++ + K Y +K + +S I R
Sbjct: 277 VGDG--ERVSRSREKHALLEGRTKELGYTVKKHL-QDLSGRISR 317
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 34.3 bits (78), Expect = 0.24
Identities = 27/178 (15%), Positives = 72/178 (40%), Gaps = 21/178 (11%)
Query: 445 LTDSDDDRKERDEFSERLKNRDKNNTKNVATSRQDKRAYEEAAKRLKLEAESRDKIIPKL 504
L +++ ++L ++ + R A+ E K + + ++++K +
Sbjct: 20 LKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKCSKEY 79
Query: 505 RIESRRKYLEKRKED--KVAELEADILDDEYLFS---EQELTERERRDREHKRKLLELAK 559
RR+ EK + +E + + + EQ+L + +RE +++ L
Sbjct: 80 LERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQDLRAQASDNREIDKRMNSLKP 139
Query: 560 EHDKAREL---------------EKVQRYYMPKGTKGPEKYEEVDEKEKVPHYEQRKW 602
+ + R++ K+ + K + ++Y +++++ +PH+E+R W
Sbjct: 140 DLMQLRKIRDQYLVWLTQKGARQRKINEWLGIKN-ETEDQYSLMEDEDALPHHEERTW 196
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 34.2 bits (79), Expect = 0.24
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 678 LIDAVRDHQVLIIEGETGSGKTT 700
L AV+ +V+++ GETGSGKTT
Sbjct: 168 LRRAVQLERVIVVAGETGSGKTT 190
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 34.3 bits (79), Expect = 0.25
Identities = 14/131 (10%), Positives = 45/131 (34%), Gaps = 8/131 (6%)
Query: 481 RAYEEAAKRLKLEAESRDKIIPKLRIESRRKYLEKRKEDKVAELEADILDDEYLFSEQEL 540
+ Y + + ++++ ++ + +E + + E +Y +EL
Sbjct: 129 KDYSIFLENENILIKAKNFLVFQGDVEQI---AAQSPVELSRMFEEVSGSIQYKKEYEEL 185
Query: 541 TERERRDREHKRKLLELAKEHDKARELEKVQRYYMPKGTKGPEKYEEVDEKEKVPHYEQR 600
E+ + + + ++ + + K + +Y+E + + +E
Sbjct: 186 KEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGR-----FEVI 240
Query: 601 KWEDEQMSSAI 611
E EQ+ +
Sbjct: 241 NNETEQLKAEE 251
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.52
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 7/22 (31%)
Query: 654 EKQK-KKLNIEETKKSLPIY-P 673
EKQ KKL + SL +Y
Sbjct: 18 EKQALKKL---QA--SLKLYAD 34
Score = 29.5 bits (65), Expect = 3.9
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 479 DKRAYEEAAKRLKLEA-ESRDKIIPKLRIES 508
+K+A ++ LKL A +S P L I++
Sbjct: 18 EKQALKKLQASLKLYADDS----APALAIKA 44
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 32.8 bits (75), Expect = 0.95
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 678 LIDAVRDHQVLIIEGETGSGKTT 700
L A+ I+ GET SGKTT
Sbjct: 253 LWLAIEHKFSAIVVGETASGKTT 275
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 32.5 bits (73), Expect = 1.0
Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 7/118 (5%)
Query: 688 LIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEV 747
L++ GE+G GK+T I L + + ++ + S + +E GV+L +
Sbjct: 34 LMVVGESGLGKSTLI-NSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTI 92
Query: 748 GYAIRFED----CTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPKVYVIDP 801
F D + +I Y+ ++L+ + M + +Y I P
Sbjct: 93 VDTPGFGDAVDNSNCWQPVIDYIDSK--FEDYLNAESRVNRRQMPDNRVQCCLYFIAP 148
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 65
Score = 29.5 bits (66), Expect = 1.1
Identities = 7/28 (25%), Positives = 9/28 (32%), Gaps = 3/28 (10%)
Query: 409 YHRMTPGCTDR---RTQSPCPSCLKVFK 433
H + C D R CP C +
Sbjct: 27 GHTLCESCVDLLFVRGAGNCPECGTPLR 54
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 32.1 bits (72), Expect = 1.2
Identities = 17/126 (13%), Positives = 42/126 (33%), Gaps = 6/126 (4%)
Query: 443 HFLTDSDDDRKERDEFSERLKNRDKNNTKNVATSRQDKRAYEEAAKRLKLEAESRDKIIP 502
T+ + RKE E + + R + + ++ E + + P
Sbjct: 105 AKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSA--P 162
Query: 503 KLRIESRRKYLEKRKEDKVAELEADILDDEYLFSEQELTER----ERRDREHKRKLLELA 558
+ ++ +R+ + A+ +A + Y +E R E + + +L
Sbjct: 163 QASPGPSKQQERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAKQRIVSHVRKLV 222
Query: 559 KEHDKA 564
+ D+
Sbjct: 223 FQGDEV 228
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 32.3 bits (74), Expect = 1.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 673 PFKQDLIDAVRDHQVLIIEGETGSGKTT 700
FK + R QVL + G G GK+T
Sbjct: 91 SFKLHRLPTPRPGQVLGLVGTNGIGKST 118
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence
factor, S active protein, toxin; 3.04A {Streptococcus
pyogenes serotype M1} PDB: 2xny_M
Length = 155
Score = 30.8 bits (68), Expect = 1.4
Identities = 24/162 (14%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 448 SDDDRKERDEFSERLKNRDKNNTKNVATSRQDKRAYEEAAKRLKLEAESRDKIIPKLRIE 507
+ D N N + ++ K E A + + + +++ E
Sbjct: 3 NGDGNPREVIEDLAANNPAIQNIRLRHENKDLKARLENAMEVAGRDFKRAEEL------E 56
Query: 508 SRRKYLE---KRKEDKVAELEADILDDEYLFSEQELTERERRDREHKRKLLELAKEHDKA 564
++ LE K E K+ EL+ D + E +R+R ++E + K L D
Sbjct: 57 KAKQALEDQRKDLETKLKELQQDYDLAK----ESTSWDRQRLEKELEEKKEALELAID-- 110
Query: 565 RELEKVQRYYMPKGTKGPEKYEEVDEKEKVPHYEQRKWEDEQ 606
+ + + EK + ++ + + +
Sbjct: 111 -QASRDYHRATALEKELEEKKKALELAIDQASQDYNRANVLE 151
Score = 30.8 bits (68), Expect = 1.6
Identities = 23/150 (15%), Positives = 51/150 (34%)
Query: 484 EEAAKRLKLEAESRDKIIPKLRIESRRKYLEKRKEDKVAELEADILDDEYLFSEQELTER 543
+ + + + + + I +R+ K L+ R E+ + D E L ++ E
Sbjct: 5 DGNPREVIEDLAANNPAIQNIRLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALED 64
Query: 544 ERRDREHKRKLLELAKEHDKARELEKVQRYYMPKGTKGPEKYEEVDEKEKVPHYEQRKWE 603
+R+D E K K L+ + K QR K +D+ + H +
Sbjct: 65 QRKDLETKLKELQQDYDLAKESTSWDRQRLEKELEEKKEALELAIDQASRDYHRATALEK 124
Query: 604 DEQMSSAIFRVGAKDREHQEQYELLLDNQI 633
+ + + +L+ ++
Sbjct: 125 ELEEKKKALELAIDQASQDYNRANVLEKEL 154
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv
flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A
{Acetobacter pasteurianus}
Length = 566
Score = 31.7 bits (73), Expect = 1.6
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 107 IHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIIL------PVYSNLPTDM 160
+H T D L ++ E + D +KI +I P Y ++ ++
Sbjct: 112 LHHTIGKTDYSYQLEMARQVTCAAESITD-AHSAPAKIDHVIRTALRERKPAYLDIACNI 170
Query: 161 QT-KIFLPTPP 170
+ P P
Sbjct: 171 ASEPCVRPGPV 181
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 31.5 bits (71), Expect = 1.7
Identities = 31/223 (13%), Positives = 81/223 (36%), Gaps = 19/223 (8%)
Query: 449 DDDRKERDEFSERLKNRDKNNTKNVATSRQDKRAYEEAAKRL-KLEAESRDKIIPKLRIE 507
+ K+ + + + ++ + + A ++L + E + + IE
Sbjct: 72 ELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIE 131
Query: 508 SRRKYLEKRKEDKVAELEADILDDEYLFSEQELTERERRDREHKRKLLELAKEHDKARE- 566
SR + E++ E + +L+ ++ + +R+ E RKL+ + + ++A E
Sbjct: 132 SRAQKDEEKMEIQEIQLKE---------AKHIAEDADRKYEEVARKLVIIESDLERAEER 182
Query: 567 LEKVQRYYMPKGTKGPEKYEEVDEKEKVPHYEQRKWEDEQMSSAIFRVGAKDREHQEQYE 626
E + + + E E+ ++++ I + K +E + + E
Sbjct: 183 AELSEGKCAELEEEIKTVTNNLKSLEA--QAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 627 LLLDNQIDFIQALSLPGNRDKGEEEMTEKQKKKLNIEETKKSL 669
+ +++ D E+E+ ++ K I E
Sbjct: 241 FAERSVTKLEKSI------DDLEDELYAQKLKYKAISEELDHA 277
>3jsr_A ALL0216 protein; structural genomics, PSI-2, protein structure
initiative, no structural genomics consortium, NESG,
NSR236, unknown funct; 1.80A {Nostoc SP} PDB: 3hze_A
Length = 119
Score = 29.8 bits (67), Expect = 2.1
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 119 FLTGQEEIETCNEILQDRVRRLGSKIKE----LIILPVYSNLPTDMQTKIFLPTPPNARK 174
FL +E IE E+L++R R + KE L+ P + P K P P A
Sbjct: 15 FLLQEEPIE---EVLKERTRHYHEQEKEIDFWLVPQPAFLEAPEFADIKAKCPQPAAA-- 69
Query: 175 VVLATN 180
+++TN
Sbjct: 70 -IISTN 74
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 30.8 bits (70), Expect = 3.0
Identities = 20/127 (15%), Positives = 37/127 (29%), Gaps = 15/127 (11%)
Query: 584 KYEEVDEKEKVPHYEQRKWEDEQMSSAIFRVGAKDREH--QEQYELLLDNQI------DF 635
+ K+ Q F ++ +LL + I +
Sbjct: 3 HHHHHHSSPKIEERTYPPQIPAQQELGDFSAYQSVLPEPLRKAEKLLQETGIKESTKTNT 62
Query: 636 IQALSLPGNRDKGEEEMTEKQKKKLNIEETKKSLPIYPFKQDLIDAVRDHQVLIIEGETG 695
++ L +TE+ E LP D + +++ G TG
Sbjct: 63 LKKLL---RFSVEAGGLTEENVVGKLQEILCDMLP----SADKWQEPIHSKYIVLFGSTG 115
Query: 696 SGKTTQI 702
+GKTT +
Sbjct: 116 AGKTTTL 122
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 30.4 bits (69), Expect = 3.3
Identities = 16/122 (13%), Positives = 35/122 (28%), Gaps = 17/122 (13%)
Query: 687 VLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVS------ARVAEEMG 740
V+++ G G+GKT Q+L G +++ + + G
Sbjct: 25 VVLLSGGPGTGKTIFSQQFLWN----------GLKMGEPGIYVALEEHPVQVRQNMAQFG 74
Query: 741 VKL-GCEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPKVYVI 799
+ E D + + + + + I + + K V+
Sbjct: 75 WDVKPYEEKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVV 134
Query: 800 DP 801
D
Sbjct: 135 DS 136
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 30.3 bits (67), Expect = 3.5
Identities = 9/129 (6%), Positives = 39/129 (30%), Gaps = 6/129 (4%)
Query: 432 FKTPKVRAFMGHFLTDSDDDRKERDEFSERLKNRDKNNTKNVATSRQDKRAYEEAAKRLK 491
F P + ++ ++ N + + + + ++
Sbjct: 44 FGAPAGSQGGLAQPGPASGASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEPESIR 103
Query: 492 LEAESRDKIIPKLRIESRRKYLEKRKEDKVAELEADILDDEYLFSEQELTERERRDREHK 551
E + K R++ + +++ + + D L++ +++ + + +R
Sbjct: 104 KWREEQRK-----RLQELDAASKVMEQEWREKAKKD-LEEWNQRQSEQVEKNKINNRIAD 157
Query: 552 RKLLELAKE 560
+ +
Sbjct: 158 KAFYQQPDA 166
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 30.5 bits (68), Expect = 3.5
Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 688 LIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEV 747
L++ GE+G GK+T I L + + ++ + S + +E GV+L +
Sbjct: 11 LMVVGESGLGKSTLI-NSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTI 69
Query: 748 ----GYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPKVYVIDP 801
G+ ++ + +I Y+ ++L+ + M + +Y I P
Sbjct: 70 VDTPGFGDAVDNSNCWQPVIDYIDSK--FEDYLNAESRVNRRQMPDNRVQCCLYFIAP 125
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 31.0 bits (69), Expect = 3.8
Identities = 20/181 (11%), Positives = 60/181 (33%), Gaps = 9/181 (4%)
Query: 527 DILDDEYLFS--EQELTERERRDREHKRKLLELAKEHDKARELEKVQRYYMPKGTKGPEK 584
+ +D LF E+ E K + D ++ + + + +
Sbjct: 34 EFMDSTDLFDVFEETPVELPTDSNGEKNADTNVGDTPDHTQDKKHGLEEEKEEHEENNSE 93
Query: 585 YEEVDEKEKVPHYEQRKWEDEQMSSAIFRVGAKDREHQEQYELLLDNQIDFIQALSLPGN 644
+++ + + +K ++ + + +++ + + Q++ + L
Sbjct: 94 NKKIKSNKSKTEDKNKKVVVPVLADSFEQEASREVDASKGLTNSETLQVEQDGKVRLSHQ 153
Query: 645 RDK------GEEEMTEKQKKKLNIEETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGK 698
+ + K++N E + PF+ I + + +++ T +GK
Sbjct: 154 VRHQVALPPNYDYTPIAEHKRVN-EARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGK 212
Query: 699 T 699
T
Sbjct: 213 T 213
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1,
structural genomics, SGC, structural genomics
consortium, alternative splicing, ANK repeat; HET: MLZ
SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A*
3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A*
3rjw_A* 2o8j_A*
Length = 287
Score = 30.3 bits (68), Expect = 4.1
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 16/72 (22%)
Query: 414 PGCTDRRTQSPCPSCLKVFKTPK----VRA------------FMGHFLTDSDDDRKERDE 457
C +R Q+ + L++++T VR+ ++G ++DS+ D +E D
Sbjct: 134 RNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREEDS 193
Query: 458 FSERLKNRDKNN 469
+ L N+D
Sbjct: 194 YLFDLDNKDGEV 205
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 30.7 bits (70), Expect = 4.1
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 674 FKQDLIDAVRDHQVLIIEGETGSGKTT 700
F + V++ V+ I G G+GK+T
Sbjct: 36 FVLYRLPVVKEGMVVGIVGPNGTGKST 62
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Length = 106
Score = 28.8 bits (64), Expect = 4.2
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 477 RQDKRAYEEAAKRLKLEAESRDKIIPKLRIESRRKYLEKRKE--DKVAELEADILDDEYL 534
+ KR E K+ L + I L + R EK KE + LEA+ D +
Sbjct: 15 KSGKRQTEREKKKKILAERRKVLAIDHLNEDQLR---EKAKELWQTIYNLEAEKFDLQEK 71
Query: 535 FSEQELTERERRDREHKRKLLELAKEHDKAR 565
F +Q+ R+R +++K KA+
Sbjct: 72 FKQQKYEINVLRNRI--NDNQKVSKTRGKAK 100
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Length = 107
Score = 28.7 bits (64), Expect = 4.2
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 474 ATSRQDKRAYEEAAKRLKLEAESRDKIIPKLRIESRRKYLEKRKE--DKVAELEADILDD 531
A ++ K+ K+ L + I L + R +K KE D + +L+ + D
Sbjct: 12 ADQKRGKKQTARETKKKVLAERRKPLNIDHLNEDKLR---DKAKELWDWLYQLQTEKYDF 68
Query: 532 EYLFSEQ-----ELTERERRDREHKRK 553
+ L R + ++H +K
Sbjct: 69 AEQIKRKKYEIVTLRNRIDQAQKHSKK 95
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4,
SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP:
b.85.7.1 PDB: 1mvx_A
Length = 299
Score = 30.2 bits (68), Expect = 4.5
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 24/75 (32%)
Query: 414 PGCTDRRTQSPCPSCLKVFKTPK----VRA------------FMGHFLTDSDDDRKERDE 457
C +R Q L++FKT + VR+ ++G +T E
Sbjct: 124 MECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITS--------AE 175
Query: 458 FSERLKNRDKNNTKN 472
++R KN D +
Sbjct: 176 AAKRDKNYDDDGITY 190
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9
methyltransferase 2, H3 lysine-9 specific 2, alternative
splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Length = 300
Score = 29.9 bits (67), Expect = 5.3
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 9/68 (13%)
Query: 414 PGCTDRRTQSPCPSCLKVFKTPKVRAF---------MGHFLTDSDDDRKERDEFSERLKN 464
P C +R Q L +F+T R + F+ + + +E R +
Sbjct: 127 PDCPNRIVQKGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQF 186
Query: 465 RDKNNTKN 472
D
Sbjct: 187 YDNKGITY 194
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 30.2 bits (68), Expect = 5.3
Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 21/130 (16%)
Query: 831 RAGRAGRVAAGKCFRLYTAWAYKHELEDNTVPEIQRI--------NLGNAVLMLKALGI- 881
RAGR G G+ + + ++ E +RI +L L + G
Sbjct: 369 RAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYA 428
Query: 882 ---NDLIHF---DFL----DPPPHETLVLALEQLYALGALNHHGDL--TKLGRRMAEFPL 929
+L F F + L + QL G + L TKLG ++ +
Sbjct: 429 KTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYI 488
Query: 930 DPMMGKMLLA 939
DP+ G +
Sbjct: 489 DPLTGFIFHD 498
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase,
flavoprotein, metal-binding, alcohol fermentation; HET:
TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A
3oe1_A* 1zpd_A*
Length = 568
Score = 30.2 bits (69), Expect = 5.7
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 9/70 (12%)
Query: 108 HATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIIL------PVYSNLPTDMQ 161
HA D L + I E + +KI +I PVY + ++
Sbjct: 114 HALG-KTDYHYQLEMAKNITAAAEAIYT-PEEAPAKIDHVIKTALREKKPVYLEIACNIA 171
Query: 162 T-KIFLPTPP 170
+ P P
Sbjct: 172 SMPCAAPGPA 181
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 29.7 bits (66), Expect = 5.8
Identities = 32/225 (14%), Positives = 73/225 (32%), Gaps = 32/225 (14%)
Query: 479 DKRAYEEAAKRLKLEAESRDKIIPKLRIESRRKYLEKRKEDKVAELEADILDDEYLFSEQ 538
DK + + + ++ K + E A L + +EQ
Sbjct: 17 DKEIDSLEPLIREKRKDLDK-------ALNDKEAKNKAILNLEEEKLA--LKLQVSKNEQ 67
Query: 539 ELTERERRDREHKRKLLELAKEHDKARELEKVQRYYMPKGTKGPEKYEEVDEKEKVPHYE 598
L + + ++K+ E REL + E D ++
Sbjct: 68 TLQDTNAKIASIQKKM----SEIKSERELRSLNI--------------EEDIAKE----R 105
Query: 599 QRKWEDEQMSSAIFRVGAKDREHQEQYELLLDNQIDFIQALSLPGNRDKGEEEMTEKQKK 658
+ E + + + K + ++ + +L+ + ++ SL N K +E + K
Sbjct: 106 SNQANRE-IENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFK 164
Query: 659 KLNIEETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIP 703
K K IY F + + ++ ++ I+ + G ++
Sbjct: 165 KKEDLVEKTEPKIYSFYERIRRWAKNTSIVTIKKQACGGCFIRLN 209
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 29.8 bits (66), Expect = 6.2
Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 25/129 (19%)
Query: 664 ETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQP 723
+ K + +D V +V++++G G GKT +I + + + P
Sbjct: 140 DMAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRV-------NFEEDLILVP 192
Query: 724 RRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLAS 783
R AA + R I + RT+ ++ +
Sbjct: 193 GRQAAEMIRRRANAS-----------GIIVATKDNVRTVDSFLMNYGKGARC-------Q 234
Query: 784 YSVMIIDEA 792
+ + IDE
Sbjct: 235 FKRLFIDEG 243
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 30.2 bits (67), Expect = 6.7
Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 7/121 (5%)
Query: 453 KERDEFSERLKNRDKNNTKNVATSRQDKRAYEEAAKRLKLEAESRDKIIPKLRIESRRKY 512
K R E E ++ ++ + + EAA R++ E KL+ ++
Sbjct: 701 KARKELLELEAMSMA--VESTGNAKAEAESRAEAA-RIEGEGSVLQA---KLKAQALAIE 754
Query: 513 LEKRKEDKVAELEADILDDEYLFSEQELTERERRDREHKR-KLLELAKEHDKARELEKVQ 571
E E E +++ + ++ + E K+ K + A R+L
Sbjct: 755 TEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAG 814
Query: 572 R 572
Sbjct: 815 P 815
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites,
phenylalanine catabolism, tryptophan catabolism,
thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces
cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A*
2vk4_A* 2vjy_A* 2g1i_A*
Length = 563
Score = 29.8 bits (68), Expect = 6.7
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 7/71 (9%)
Query: 107 IHATQPLGDILVFLTGQEEIETCNEILQDRVRRLGSKIKELIIL------PVYSNLPTDM 160
+H T GD VF I ++ D + ++I I PVY LP ++
Sbjct: 113 LHHTLGNGDFTVFHRMSANISETTAMITD-IATAPAEIDRCIRTTYVTQRPVYLGLPANL 171
Query: 161 QTKIFLPTPPN 171
Sbjct: 172 VDLNVPAKLLQ 182
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A
{Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Length = 522
Score = 30.1 bits (67), Expect = 6.7
Identities = 17/128 (13%), Positives = 47/128 (36%), Gaps = 9/128 (7%)
Query: 442 GHFLTDSDDDRKERDEFSERLKNRDKNNTKNVATSRQDKRAYEEAAKRLKLEAESRDKII 501
G ++ D + R + +E L + K + + + + + E R +
Sbjct: 85 GRYVRVHDAIFRLRKQLAEALGKKYKIGIRGIEVESFIIK--------VPADHELRMLKV 136
Query: 502 PKLR-IESRRKYLEKRKEDKVAELEADILDDEYLFSEQELTERERRDREHKRKLLELAKE 560
P ++ +E+ ++ E AE++ + D E+++ + + LL +
Sbjct: 137 PYIKSMENIEGGIQLELEVGEAEMKNRVPDRILTLLEEKIEAAQYGAKAEHWNLLWQREP 196
Query: 561 HDKARELE 568
+ + +
Sbjct: 197 MEHPFKED 204
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 29.4 bits (65), Expect = 6.9
Identities = 17/123 (13%), Positives = 43/123 (34%), Gaps = 4/123 (3%)
Query: 443 HFLTDSDDDRKERDEFSERLKNRDKNNTKNVATSRQDKRAYEEAAKRLKLEAESRDKIIP 502
H +RK+ ++ ++ + V + K Y A K + A ++++
Sbjct: 107 HHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKA---KADYHSACKTER-SATNQERNAN 162
Query: 503 KLRIESRRKYLEKRKEDKVAELEADILDDEYLFSEQELTERERRDREHKRKLLELAKEHD 562
S + + + + + ++Y + E+T+ E + E + +
Sbjct: 163 ADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAIAEITKYNSVYIEDMTSVFEKCQTFE 222
Query: 563 KAR 565
K R
Sbjct: 223 KTR 225
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 29.6 bits (67), Expect = 7.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 674 FKQDLIDAVRDHQVLIIEGETGSGKTT 700
F + V+D V+ I G G+GKTT
Sbjct: 106 FVLYRLPIVKDGMVVGIVGPNGTGKTT 132
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 29.4 bits (65), Expect = 7.6
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 6/114 (5%)
Query: 692 GETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEV---- 747
GE+G GK+T I + + + + R + S EE GVKL V
Sbjct: 25 GESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTP 84
Query: 748 GYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPKVYVIDP 801
GY +TII Y+ + +L + + +I + H Y I P
Sbjct: 85 GYGDAINCRDCFKTIISYIDE--QFERYLHDESGLNRRHIIDNRVHCCFYFISP 136
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 29.5 bits (65), Expect = 8.5
Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 12/132 (9%)
Query: 445 LTDSDDDRKERDEFSERLKNRDKNNTKNVATSRQDKRAYEEAAKRLKLEAESRDKIIPKL 504
L++ D+ +KER+ LK+ + + T T+ E L D+
Sbjct: 562 LSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINE----EALSVTELDR----- 612
Query: 505 RIESRRKYLEKRKEDKVAELEADILDDEYLFSEQELTERERRDREHKRKLLELAKE--HD 562
+++ + K L +I FS+ + + E RE K L A + +
Sbjct: 613 VYGGLTTKVQESLK-KQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVE 671
Query: 563 KARELEKVQRYY 574
L++ ++Y
Sbjct: 672 LVANLKEGTKFY 683
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP
phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium
tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A*
1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A*
1w2h_A*
Length = 214
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 687 VLI-IEGETGSGKTTQIP---QYLHEAGF 711
+LI IEG G+GK T + AG
Sbjct: 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGR 29
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 29.1 bits (65), Expect = 9.1
Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 17/122 (13%)
Query: 687 VLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVS------ARVAEEMG 740
+++ G TG+GKTT Q++++ G + +++ R G
Sbjct: 32 TVLLTGGTGTGKTTFAAQFIYK-GAEEYG--------EPGVFVTLEERARDLRREMASFG 82
Query: 741 VKL-GCEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPKVYVI 799
E I D S + L F + + Y ++ + K VI
Sbjct: 83 WDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVD-NFLRYIYRVVKAINAKRLVI 141
Query: 800 DP 801
D
Sbjct: 142 DS 143
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent
methyltransferase histone H3 lysine- 9 methylation;
1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Length = 302
Score = 29.2 bits (65), Expect = 9.1
Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 24/75 (32%)
Query: 414 PGCTDRRTQSPCPSCLKVFKTPK----VRA------------FMGHFLTDSDDDRKERDE 457
C +R + L++F+T V+ ++G +T +E
Sbjct: 120 KDCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITS--------EE 171
Query: 458 FSERLKNRDKNNTKN 472
R K+
Sbjct: 172 ADRRRAESTIARRKD 186
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 29.5 bits (65), Expect = 9.2
Identities = 16/114 (14%), Positives = 44/114 (38%), Gaps = 17/114 (14%)
Query: 453 KERDEFSERLKNRDKNNTKNVATSRQDKRAYEEAAKRLKLEAESRDKIIPKLRIESRRKY 512
K ++ ++ + D+ T ++K E K +A ++ + + E +
Sbjct: 466 KSKESMTDAILQTDQTLT------EKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQ 519
Query: 513 LEKRKEDKVAELEADILDDEYLFSEQELTERERRDREHKRKLLELAKEHDKARE 566
E+ ++ + +L E+ +R + +E +R L +E ++ +
Sbjct: 520 KERSYQEHLKQLT-----------EKMENDRVQLLKEQERTLALKLQEQEQLLK 562
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.394
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 20,304,252
Number of extensions: 1271552
Number of successful extensions: 3618
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3455
Number of HSP's successfully gapped: 189
Length of query: 1320
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1215
Effective length of database: 3,770,088
Effective search space: 4580656920
Effective search space used: 4580656920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (27.9 bits)