RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1907
(1320 letters)
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus
[TaxId: 11089]}
Length = 299
Score = 182 bits (462), Expect = 1e-51
Identities = 36/230 (15%), Positives = 63/230 (27%), Gaps = 37/230 (16%)
Query: 796 VYVIDPGFC-KQNNFNSRTGMESLTVVPISKASANQRAGRAGRVAAGKCFRLYTAWAYKH 854
V+D K + + + IS +SA QR GR GR + Y Y
Sbjct: 101 ERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP-NRDGDSYY---YSE 156
Query: 855 ELEDNTVPEIQR----INLGNAVLMLKALGINDLIHFDFLDPPPHETLVLALEQLYALGA 910
+N + + L N + + + P E + ++
Sbjct: 157 PTSENNAHHVCWLEASMLLDNMEVRGGMVAPLYGVEGTKTPVSPGEMRLRDDQRKVFREL 216
Query: 911 LNHHGDLTKLGRRMAEFPLDPMMGKMLLASEKYKCVEEIVTIASMLSVNGAIFYRPKDKI 970
+ + L ++A+ L K F P++
Sbjct: 217 VRNCDLPVWLSWQVAKAGLKTNDRKWC-------------------------FEGPEEHE 251
Query: 971 IHADTARK-NFFMLGGDHLVLLNIYNQWADADFSTQWCYENFIQHRSMKR 1019
I D+ GG L + + S Q FI+ +R
Sbjct: 252 ILNDSGETVKCRAPGGAKKPLRPRW--CDERVSSDQSALSEFIKFAEGRR 299
Score = 97.0 bits (241), Expect = 2e-22
Identities = 24/154 (15%), Positives = 41/154 (26%), Gaps = 21/154 (13%)
Query: 77 IPGRRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCNEILQDR 136
P ++ T P + I FL L+
Sbjct: 6 FPHSNGEIEDVQTDIPSEPWNTG----HDWI--LADKRPTAWFLPSIRAANVMAASLRKA 59
Query: 137 VRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATNIAETSLTIDNIIYVID 196
+ ++ + I +LAT+IAE + + V+D
Sbjct: 60 GKS---------VVVLNRKTFEREYPTIK----QKKPDFILATDIAEMGANLC-VERVLD 105
Query: 197 PGFC-KQNNFNSRTGMESLTVVPISKASANQRAG 229
K + + + IS +SA QR G
Sbjct: 106 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRG 139
Score = 50.0 bits (119), Expect = 9e-07
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 1151 GGDHLVLLNIYNQWADADFSTQWCYENFIQHRSMKR 1186
GG L + + S Q FI+ +R
Sbjct: 266 GGAKKPLRPRW--CDERVSSDQSALSEFIKFAEGRR 299
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 95.4 bits (236), Expect = 8e-22
Identities = 37/231 (16%), Positives = 73/231 (31%), Gaps = 33/231 (14%)
Query: 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSATL 60
M T LS + +Y+++I+DEAH + G + V + +++
Sbjct: 83 MCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEMGEAAGIFMTATP- 141
Query: 61 DAQKFSEFFDDAPVFRIPGRRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFL 120
P P+ + PE + T G + F+
Sbjct: 142 ----------PGSRDPFPQSNAPIMDEEREIPERSWNSG------HEWVTDFKGKTVWFV 185
Query: 121 TGQEEIETCNEILQDRVRRLGSKIKELIILPVYSNLPTDMQTKIFLPTPPNARKVVLATN 180
+ L+ ++ ++ + ++ T N V+ T+
Sbjct: 186 PSIKAGNDIAACLRKNGKK---------VIQLSR----KTFDSEYIKTRTNDWDFVVTTD 232
Query: 181 IAETSLTIDNIIYVIDPGFCKQ--NNFNSRTGMESLTVVPISKASANQRAG 229
I+E VIDP C + + + +P++ +SA QR G
Sbjct: 233 ISEMGANFK-AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRG 282
Score = 85.7 bits (211), Expect = 2e-18
Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 7/114 (6%)
Query: 680 DAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEM 739
D R ++ I++ G+GKT + + + + P RV A + +
Sbjct: 4 DIFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGL-RTLILAPTRVVAAEMEEALRGLP 62
Query: 740 GVKLGCEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAH 793
+ R I+ M T LS + +Y+++I+DEAH
Sbjct: 63 IRYQT------PAIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAH 110
Score = 61.9 bits (149), Expect = 1e-10
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 794 PKVYVIDPGFCKQ--NNFNSRTGMESLTVVPISKASANQRAGRAGRVAAGKCFRLYTAWA 851
VIDP C + + + +P++ +SA QR GR GR + +
Sbjct: 241 KAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYI---- 296
Query: 852 YKHELEDN 859
Y E +N
Sbjct: 297 YMGEPLEN 304
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 76.4 bits (187), Expect = 6e-17
Identities = 23/123 (18%), Positives = 37/123 (30%), Gaps = 12/123 (9%)
Query: 681 AVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMG 740
+ QV + TGSGK+T++P G K+ P A + A +++ G
Sbjct: 4 VPQSFQVAHLHAPTGSGKSTKVPAAYAAQG-----YKVLVLNPSVAATLGFGAYMSKAHG 58
Query: 741 VKLGCEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPKVYVID 800
V G + +Y ++I DE H
Sbjct: 59 VDPNIRTGVRTITTGSPITYSTYGKFL-------ADGGCSGGAYDIIICDECHSTDATSI 111
Query: 801 PGF 803
G
Sbjct: 112 LGI 114
Score = 56.0 bits (134), Expect = 1e-09
Identities = 10/55 (18%), Positives = 20/55 (36%)
Query: 5 TLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSAT 59
+Y ++I DE H + + G V D +++++AT
Sbjct: 81 YGKFLADGGCSGGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATAT 135
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 53.9 bits (128), Expect = 5e-09
Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 7/114 (6%)
Query: 680 DAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEM 739
++ +++ G+GKT + + + + R V + A ++
Sbjct: 2 HMLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDV 61
Query: 740 GVKLGCEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAH 793
F S R +I M TL L + ++ V+I+DEAH
Sbjct: 62 KFH-------TQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAH 108
Score = 38.5 bits (88), Expect = 0.001
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 1 MTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIVRFRSDLKLLISSAT 59
M TL L + ++ V+I+DEAH + G R + ++ +AT
Sbjct: 81 MCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARAN-ESATILMTAT 138
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 41.0 bits (95), Expect = 4e-04
Identities = 33/207 (15%), Positives = 59/207 (28%), Gaps = 39/207 (18%)
Query: 587 EVDEKEKVPHYEQRKWEDEQMSSAIFRVGAKDREHQEQYELLLDNQIDFIQALSLPGNRD 646
V VPH K++ S +R A +++ E N I+F+
Sbjct: 12 VVKGDAHVPHA---KFDSR---SGTYRALAFR--YRDIIEYFESNGIEFV---------- 53
Query: 647 KGEEEMTEKQKKKLNIEETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYL 706
+ + + + +++ ++ + I TGSGKT +
Sbjct: 54 -------DNAADPIPTPYFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAI 106
Query: 707 HEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSERTIIKYM 766
+E P A R+ +G G + T Y+
Sbjct: 107 NELS-----TPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAYV 161
Query: 767 TDGTLHREFLSEPDLASYSVMIIDEAH 793
L F ++I DE H
Sbjct: 162 NAEKLGNRF---------MLLIFDEVH 179
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 35.6 bits (81), Expect = 0.025
Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 6/128 (4%)
Query: 672 YPFKQDLIDAVRDHQVLIIEGETGSGKTT-QIPQYLHEAGFTKDKMKIGCTQPRRVAAMS 730
++ + + TG GKT+ + L A K I T + A
Sbjct: 45 RAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAE 104
Query: 731 VSARVAEEMGVKLGCEVGYAIRFEDCTSERTIIKYMT-----DGTLHREFLSEPDLASYS 785
+ AE+ GV +GY + ++ + T +L +
Sbjct: 105 TIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHFD 164
Query: 786 VMIIDEAH 793
+ +D+
Sbjct: 165 FIFVDDVD 172
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 34.9 bits (79), Expect = 0.039
Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 13/154 (8%)
Query: 658 KKLNIEETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMK 717
K+ IEE ++P + + ++ V + L++ T +GKT + K
Sbjct: 19 KEEGIEE------LFPPQAEAVEKVFSGKNLLLAMPTAAGKTLL--AEMAMVREAIKGGK 70
Query: 718 IGCTQPRRVAAMSVSARVAEEMGVKLGCEV--GYAIRFEDCTSERTIIKYMTDGTLHREF 775
P R A + + L + G ++ + II ++
Sbjct: 71 SLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIR 130
Query: 776 LSEPDLASYSVMIIDEAHPKVYVIDPGFCKQNNF 809
+ + S +++DE H +
Sbjct: 131 NRASWIKAVSCLVVDEIH---LLDSEKRGATLEI 161
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 35.0 bits (80), Expect = 0.046
Identities = 23/179 (12%), Positives = 58/179 (32%), Gaps = 16/179 (8%)
Query: 452 RKERDEFSERLKNRDKNNTKNVATSRQDKRAY---EEAAKRLKLEAESRDKIIPKLRIES 508
+ + + D + R E A E + + ++RI +
Sbjct: 88 AQLPGDGAVLGDKLDPAAMQLALDQRAALADRTLGEWAEPFFGDEQRRQRHDLERIRIAN 147
Query: 509 RRKYLEKRKEDKVAELEADILDDEYLFSEQELTERERRDREHKRKLLELAKEHDKARELE 568
++K ++A L+A + DE Q+ ++D K L+ A +
Sbjct: 148 DTTLSPEQKAARLAALDAQLTPDE---RAQQAALHAQQDAVTKIADLQKAGATPDQMRAQ 204
Query: 569 KVQRYYMPKGTKGPE-KYEEVDEKEKVPHY--EQRKWEDEQMSSAIFRVGAKDREHQEQ 624
Q + + + ++ + + Y E+ + + ++ +DR+ +
Sbjct: 205 IAQTLGPEAAARAAQMQQDDEAWQTRYQAYAAERDRIAAQGLA-------PQDRDARIA 256
Score = 30.8 bits (69), Expect = 0.88
Identities = 23/208 (11%), Positives = 51/208 (24%), Gaps = 24/208 (11%)
Query: 452 RKERDEFSERLKNRDKNNTKNVATSRQDKRAYEEAAKRLKLEAESRDKIIPKLRIESRRK 511
R D ++ L + + + AA + E +
Sbjct: 81 RAYFDALAQ-LPGDGAVLGDKLDPAAMQLALDQRAALADRTLGE-----------WAEPF 128
Query: 512 YLEKRKEDKVAELEADILDDEYLFSEQELTERERRDREHKRKLLELAKEHDKARELEKVQ 571
+ ++++ + I +D L S ++ R +L + + Q
Sbjct: 129 FGDEQRRQRHDLERIRIANDTTL-SPEQKAARLAALDA------QLTPDERAQQAALHAQ 181
Query: 572 RYYMPKGTKGPEKYEEVDEKEKVPHYEQRKWEDEQMSSAIFRVGAKDREHQEQYELLLDN 631
+ + K + Q ++A +D E +
Sbjct: 182 QDAVTK-----IADLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQAYAA 236
Query: 632 QIDFIQALSLPGNRDKGEEEMTEKQKKK 659
+ D I A L +Q
Sbjct: 237 ERDRIAAQGLAPQDRDARIAQLRQQTFT 264
Score = 30.4 bits (68), Expect = 1.3
Identities = 8/130 (6%), Positives = 41/130 (31%), Gaps = 7/130 (5%)
Query: 447 DSDDDRKERDEFSERLKNRDKNNTKNVATSRQDKRAYEEAAKRLKLEAESRDKIIPKLRI 506
D+ +++ L + + + + ++ L+ + D++ ++
Sbjct: 148 DTTLSPEQKAARLAALDAQLTPDERAQQAALHAQQDAVTKIADLQKAGATPDQMRAQIAQ 207
Query: 507 ESRRKYLEKRKEDKVAELEADILDDEYLFSEQELTERERRDREHKRKLLELAKEH----- 561
+ + + + + Y + + ++ ++ +L ++
Sbjct: 208 TLGPEAAARAAQMQQDDEAWQTRYQAYAAERDRIAAQGLAPQDRDARIAQLRQQTFTAPG 267
Query: 562 --DKARELEK 569
+A L++
Sbjct: 268 EAIRAASLDR 277
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 33.2 bits (74), Expect = 0.14
Identities = 12/127 (9%), Positives = 24/127 (18%)
Query: 686 QVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGC 745
+ + GE +GKT D+ + + + G
Sbjct: 24 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL 83
Query: 746 EVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPKVYVIDPGFCK 805
+ + E A V + Y
Sbjct: 84 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA 143
Query: 806 QNNFNSR 812
+ +R
Sbjct: 144 RQMHLAR 150
>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding
protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}
Length = 321
Score = 33.1 bits (74), Expect = 0.24
Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 5/125 (4%)
Query: 537 EQELTERERRDREHKRKLLELAKEHDKARELEKVQRYYMPKGTKGPEKYEEVDEKEKVPH 596
QELT+RE ++ L EL K+ D K R + E+ ++ E
Sbjct: 4 SQELTQREANVKKVHENLEELQKKLDHTSFAHKEDRDRLEAQIAQKEQEQKAKLAEYDQK 63
Query: 597 YEQRKWEDEQMSSAI-FRVGAKDREHQEQYELLLDNQIDFIQALSLPGNRDKGEEEMTEK 655
+ E+ G E Q LL D + D + ++E+
Sbjct: 64 VQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDASG----YNRLRPSKPMLSEE 119
Query: 656 QKKKL 660
L
Sbjct: 120 DTNIL 124
>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase
(DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}
Length = 170
Score = 31.8 bits (71), Expect = 0.31
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 1072 AKHNQTVMIHPNSSLFEELPRWVLYHELVFTTKEFMRQVTEIESKWLLEVAPHYYKPREL 1131
A V + M+Q + + +LEVAP+ P L
Sbjct: 106 ATAAGNVALVSTGRNP---DFTASSQIAFGRAAHRMKQQGQSGAFTVLEVAPYLLSPENL 162
Query: 1132 ED 1133
+D
Sbjct: 163 DD 164
Score = 31.8 bits (71), Expect = 0.31
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 1239 AKHNQTVMIHPNSSLFEELPRWVLYHELVFTTKEFMRQVTEIESKWLLEVAPHYYKPREL 1298
A V + M+Q + + +LEVAP+ P L
Sbjct: 106 ATAAGNVALVSTGRNP---DFTASSQIAFGRAAHRMKQQGQSGAFTVLEVAPYLLSPENL 162
Query: 1299 ED 1300
+D
Sbjct: 163 DD 164
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 32.5 bits (73), Expect = 0.32
Identities = 21/162 (12%), Positives = 42/162 (25%), Gaps = 13/162 (8%)
Query: 676 QDLIDAVRDHQ----VLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSV 731
L+DA+ + L + G G+GK+T + + K+ + P
Sbjct: 41 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGS 100
Query: 732 SARVAEEMGVKLGCEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSV----- 786
M L IR + + + D+
Sbjct: 101 ILGDKTRM-NDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQ 159
Query: 787 ---MIIDEAHPKVYVIDPGFCKQNNFNSRTGMESLTVVPISK 825
+ + + G + ME ++ I+K
Sbjct: 160 SETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINK 201
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 32.4 bits (73), Expect = 0.44
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 683 RDHQVLIIEGETGSGKTT---QIPQYLHEAGFTKDKMK 717
+++Q +II GE+G+GKT +I Q+L +
Sbjct: 84 QENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNG 121
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 31.3 bits (70), Expect = 0.92
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 683 RDHQVLIIEGETGSGKTT---QIPQYL 706
+Q +I+ GE+G+GKT +Y
Sbjct: 92 ERNQSIIVSGESGAGKTVSAKYAMRYF 118
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 31.2 bits (70), Expect = 0.93
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 683 RDHQVLIIEGETGSGKTT---QIPQYL 706
R++Q +I GE+G+GKT ++ YL
Sbjct: 119 RENQSCLITGESGAGKTENTKKVIMYL 145
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId:
10665]}
Length = 282
Score = 30.6 bits (68), Expect = 1.0
Identities = 24/210 (11%), Positives = 58/210 (27%), Gaps = 9/210 (4%)
Query: 587 EVDEKEKVPHYEQRKWEDEQMSSAIFRVGAKDREHQEQYELLLDNQIDFIQALSLPGNRD 646
E D P + W+ I + + +F + +
Sbjct: 32 EADGYRFNPRFRYGNWDGR-----IRLLDYNRLLPFGLVGQIKKFCDNFGYKAWIDPQIN 86
Query: 647 KGEE---EMTEKQKKKLNIEETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIP 703
+ EE + ++ KL I K + + +++D + ++ I+ T +G++
Sbjct: 87 EKEELSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQ- 145
Query: 704 QYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSERTII 763
L + KI P ++ + +
Sbjct: 146 ALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDA 205
Query: 764 KYMTDGTLHREFLSEPDLASYSVMIIDEAH 793
+ + + + +M+ DE H
Sbjct: 206 PVVVGTWQTVVKQPKEWFSQFGMMMNDECH 235
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 31.2 bits (70), Expect = 1.0
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 683 RDHQVLIIEGETGSGKTT---QIPQYL 706
R+ Q ++ GE+G+GKT ++ QYL
Sbjct: 89 REDQSILCTGESGAGKTENTKKVIQYL 115
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 31.2 bits (70), Expect = 1.1
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Query: 683 RDHQVLIIEGETGSGKTT---QIPQYL 706
R++Q ++I GE+G+GKT ++ QY
Sbjct: 121 RENQSILITGESGAGKTVNTKRVIQYF 147
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 30.3 bits (67), Expect = 1.2
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 685 HQVLIIEGETGSGKTTQI 702
++V+++ G G G TT
Sbjct: 1 NKVVVVTGVPGVGSTTSS 18
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 30.1 bits (66), Expect = 1.2
Identities = 19/126 (15%), Positives = 36/126 (28%), Gaps = 7/126 (5%)
Query: 673 PFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVS 732
+++ + ++ LI+ TG GKT TK K+ P + + +
Sbjct: 12 IYQEVIYAKCKETNCLIV-LPTGLGKTLIAMMIAEYR-LTKYGGKVLMLAPTKPLVLQHA 69
Query: 733 ARVAEEMGVKLGCEVGYAIRFEDCTSERTI-----IKYMTDGTLHREFLSEPDLASYSVM 787
+ V + I + L S++
Sbjct: 70 ESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLI 129
Query: 788 IIDEAH 793
+ DEAH
Sbjct: 130 VFDEAH 135
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 30.8 bits (69), Expect = 1.2
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Query: 683 RDHQVLIIEGETGSGKTT---QIPQYL 706
R +Q L+I GE+G+GKT ++ QYL
Sbjct: 123 RQNQSLLITGESGAGKTENTKKVIQYL 149
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 30.1 bits (67), Expect = 1.2
Identities = 11/56 (19%), Positives = 22/56 (39%)
Query: 686 QVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGV 741
+V+++ G G GKTT I + K+ R A + + + + +
Sbjct: 7 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSI 62
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 30.3 bits (68), Expect = 1.4
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 681 AVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMG 740
+ + VLI GE+G GK + + +H+ + + + + E G
Sbjct: 20 SCAECPVLI-TGESGVGKEV-VARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKG 77
Query: 741 VKLGCEVGYAIRFE 754
G FE
Sbjct: 78 AFTGAVSSKEGFFE 91
>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain
{Sulfur-oxidizing endosymbiont of Riftia pachyptila
[TaxId: 35843]}
Length = 223
Score = 30.2 bits (67), Expect = 1.5
Identities = 23/147 (15%), Positives = 46/147 (31%), Gaps = 6/147 (4%)
Query: 875 MLKALGINDLIHFDFLDPP--PHETLVL-ALEQLYALGALNHHGDLTKLGRRMAEFPLDP 931
+K G + ++ F +P HE L A+E L A G + H + + + P
Sbjct: 13 EIKEHGWSKVVAFQTRNPMHRAHEELCRMAMESLDADGVVVH---MLLGKLKKGDIPAPV 69
Query: 932 MMGKMLLASEKYKCVEEIVTIASMLSVNGAIFYRPKDKIIHADTARKNFFMLGGDHLVLL 991
+ +E Y ++ + A F++G DH +
Sbjct: 70 RDAAIRTMAEVYFPPNTVMVTGYGFDMLYAGPREAVLHAYFRQNMGATHFIIGRDHAGVG 129
Query: 992 NIYNQWADADFSTQWCYENFIQHRSMK 1018
+ Y + E ++ +
Sbjct: 130 DYYGAFDAQTIFDDEVPEGAMEIEIFR 156
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 29.7 bits (66), Expect = 1.6
Identities = 25/154 (16%), Positives = 51/154 (33%), Gaps = 11/154 (7%)
Query: 679 IDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEE 738
+ ++D + + G GSGKTT + + + +R AA + E+
Sbjct: 4 LPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEK 63
Query: 739 MGVKL----GCEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHP 794
+GV + E +IR R + + + L + + P
Sbjct: 64 VGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGP 123
Query: 795 -KVYVIDPGFCKQNN------FNSRTGMESLTVV 821
+V ++ Q F+ + G+ L +
Sbjct: 124 DEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLT 157
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 29.5 bits (65), Expect = 2.5
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 822 PISKASANQRAGRAGRVAAGKCFRLYT 848
S + QR GR GR G+ L
Sbjct: 247 VPSAIRSIQRRGRTGRHMPGRVIILMA 273
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 29.7 bits (66), Expect = 2.5
Identities = 18/189 (9%), Positives = 54/189 (28%), Gaps = 4/189 (2%)
Query: 480 KRAYEEAAKRLKLEAESRDKIIPKLRIESRRKYLEKRKEDKVAELEADILDDEYLFSE-Q 538
++ ++ K+ + + R + ++ + ++ K + + L +
Sbjct: 106 EKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYY 165
Query: 539 ELTERERRDREHKRKLLELAKEHDKARELEKVQRYYMPKGTKGPEKYEEVDEKEKVPHYE 598
E + + E + L+ + A K + E + +E
Sbjct: 166 EEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHE 225
Query: 599 QRKWEDEQMSSAIFRVGAKDREHQEQYELLLDNQIDFIQALSLPGNRDKGEEEMTEKQKK 658
++ ++ M ++ E+ E + + E+E K+
Sbjct: 226 MQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTL---ALKLQEQEQLLKEGF 282
Query: 659 KLNIEETKK 667
+ K
Sbjct: 283 QKESRIMKN 291
Score = 28.6 bits (63), Expect = 5.2
Identities = 18/188 (9%), Positives = 59/188 (31%), Gaps = 2/188 (1%)
Query: 480 KRAYEEAAKRLKLEAESRDKIIPKLRIESRRKYLEKRKEDKVAELEADILDDEYLFSEQE 539
A ++A + + + ++ + E + + +E + + D ++LF ++
Sbjct: 42 SAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKEL 101
Query: 540 LTERERRDREHKRKLLELAKEHDKARELEKVQRYYMPKGTKGPEKYEEVDEKEKVPHYEQ 599
+ E++ + ++ E + + K + + V +
Sbjct: 102 AAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEV--KAGIYSKPGGYRLFVQKLQD 159
Query: 600 RKWEDEQMSSAIFRVGAKDREHQEQYELLLDNQIDFIQALSLPGNRDKGEEEMTEKQKKK 659
K + + + + + + E + D + Q L+ + E E +
Sbjct: 160 LKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQAS 219
Query: 660 LNIEETKK 667
+ +
Sbjct: 220 AKMLHEMQ 227
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 28.8 bits (63), Expect = 3.1
Identities = 18/114 (15%), Positives = 30/114 (26%), Gaps = 6/114 (5%)
Query: 686 QVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMG----- 740
+ + + G G GKTT I + + + T+ R + V G
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 741 VKLGCEVGYAIRFEDCTSERTIIKYMTD-GTLHREFLSEPDLASYSVMIIDEAH 793
++G E R + V +IDE
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIG 115
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 29.0 bits (63), Expect = 3.2
Identities = 9/123 (7%), Positives = 31/123 (25%)
Query: 688 LIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEV 747
+ G G+GKT + + + ++ +A + +
Sbjct: 46 ATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRG 105
Query: 748 GYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPKVYVIDPGFCKQN 807
F E + + + + + + + + + K+
Sbjct: 106 LSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVG 165
Query: 808 NFN 810
+ +
Sbjct: 166 HND 168
>d1vqoa2 b.40.4.5 (A:1-90) N-terminal domain of ribosomal protein L2
{Archaeon Haloarcula marismortui [TaxId: 2238]}
Length = 90
Score = 27.4 bits (61), Expect = 3.5
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 73 PVFRIPGRRFPVDIYYTKAPEADYIDACVVSILQ 106
FR P R+ D+ + K + D I VV I
Sbjct: 14 STFRAPSHRYKADLEHRKVEDGDVIAGTVVDIEH 47
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 28.7 bits (64), Expect = 3.7
Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 682 VRDHQVLIIEGETGSGKTT------------QIPQYLHEAGFTKDKMKIG-----CTQPR 724
+ V+ G G GKTT + + TK K KI PR
Sbjct: 24 IEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPR 83
Query: 725 RVAAMSVSARVAEEMGVKLG-CEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLAS 783
+++ VA GVK+ E+ A+ + + + ++ GT+ R L+ L +
Sbjct: 84 KISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVN 143
Query: 784 YSVMIIDEA 792
+ ++D+
Sbjct: 144 AEIYVLDDP 152
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 28.4 bits (62), Expect = 4.3
Identities = 11/83 (13%), Positives = 22/83 (26%), Gaps = 3/83 (3%)
Query: 687 VLIIEGETGSGKTT---QIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKL 743
+L +G+GKTT ++ L G +K S + + +
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQT 63
Query: 744 GCEVGYAIRFEDCTSERTIIKYM 766
T + +
Sbjct: 64 IVASQQRWALMTETPDEEELDLQ 86
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 28.4 bits (62), Expect = 4.4
Identities = 20/161 (12%), Positives = 37/161 (22%), Gaps = 5/161 (3%)
Query: 688 LIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQP--RRVAAMSVSARVAEEMGVKLGC 745
+II GE G GKTT + + + G + + + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 746 EVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPKVYVIDPGFCK 805
+ + + E V+IIDE
Sbjct: 63 FFTSKKLVGSYGVNVQYFEELA-IPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121
Query: 806 QNNFNSRTGMESLTVVPISKASANQRAGRAGRVAAGKCFRL 846
+ + +PI + R+ L
Sbjct: 122 VRQIMHDPNVNVVATIPIR--DVHPLVKEIRRLPGAVLIEL 160
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 28.5 bits (62), Expect = 4.5
Identities = 13/114 (11%), Positives = 32/114 (28%), Gaps = 8/114 (7%)
Query: 687 VLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCE 746
+ + GE GSGKT ++ + + + E+ G +
Sbjct: 38 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLD 97
Query: 747 VGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPKVYVID 800
++ H+ L + ++ + K+ ++D
Sbjct: 98 PDEVLKHIYVARAFNSN--------HQMLLVQQAEDKIKELLNTDRPVKLLIVD 143
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 28.5 bits (62), Expect = 4.5
Identities = 17/174 (9%), Positives = 35/174 (20%), Gaps = 7/174 (4%)
Query: 686 QVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGC 745
+ + GE +GK+ D + + + G
Sbjct: 35 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGL 94
Query: 746 EVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEP-------DLASYSVMIIDEAHPKVYV 798
+ A+ + + +SE D ++
Sbjct: 95 DPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSA 154
Query: 799 IDPGFCKQNNFNSRTGMESLTVVPISKASANQRAGRAGRVAAGKCFRLYTAWAY 852
K R + V ++ Q G K A+
Sbjct: 155 RQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPTGGNIMAH 208
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 28.4 bits (62), Expect = 4.7
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 687 VLIIEGETGSGKTTQI 702
+ I+ G G GK+T +
Sbjct: 3 IGIVTGIPGVGKSTVL 18
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 28.1 bits (61), Expect = 5.5
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 683 RDHQVLIIEGETGSGKTTQ 701
DH + ++ G +GSGK+
Sbjct: 4 HDHHIYVLMGVSGSGKSAV 22
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 28.3 bits (63), Expect = 5.7
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 821 VPISKASANQRAGRAGRVAAG 841
+P S QR GR GR G
Sbjct: 126 LPQDAVSRTQRRGRTGRGKPG 146
>d1s48a_ e.8.1.4 (A:) Viral RNA polymerase {Bovine viral diarrhea
virus [TaxId: 11099]}
Length = 588
Score = 28.7 bits (64), Expect = 6.3
Identities = 7/89 (7%), Positives = 23/89 (25%), Gaps = 6/89 (6%)
Query: 289 TYLVGFIWHWKNHYIQDQTLVTFMLTHLPTTYIKRKSSEYKVGNGEDS----FCVSPLYN 344
+ K Y + + F +S + G +
Sbjct: 385 PQKITEGEKMKVAYRFED--IEFCSHTPVPVRWSDNTSSHMAGRDTAVILSKMATRLDSS 442
Query: 345 LTIQSSSFQSITIQCFASLQLHHPVIQLF 373
+++++ F + +P+++
Sbjct: 443 GERGTTAYEKAVAFSFLLMYSWNPLVRRI 471
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 28.2 bits (61), Expect = 6.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 676 QDLIDAVRDHQVLIIEGETGSGKTTQIPQYLH 707
+ L D RD L++ G G+GK T+ L
Sbjct: 24 KSLSDQPRDLPHLLLYGPNGTGKKTRCMALLE 55
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId:
5141]}
Length = 284
Score = 28.4 bits (62), Expect = 6.6
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 8/86 (9%)
Query: 414 PGCTDRRTQSPCPSCLKVFKTPK----VRAFM----GHFLTDSDDDRKERDEFSERLKNR 465
C +R + L++F+T V+ + G F+ + +E R
Sbjct: 112 KDCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAES 171
Query: 466 DKNNTKNVATSRQDKRAYEEAAKRLK 491
K+V DK + ++ L
Sbjct: 172 TIARRKDVYLFALDKFSDPDSLDPLL 197
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 28.1 bits (61), Expect = 6.9
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 1/123 (0%)
Query: 672 YPFKQDLIDAVRDHQVLIIEGETGSGKT-TQIPQYLHEAGFTKDKMKIGCTQPRRVAAMS 730
P ++++ID V + ++ TG GK+ L G T + +V +
Sbjct: 27 RPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQ 86
Query: 731 VSARVAEEMGVKLGCEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIID 790
+ A + E + T + ++ + + FL + ++ +D
Sbjct: 87 ANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVD 146
Query: 791 EAH 793
EAH
Sbjct: 147 EAH 149
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 28.1 bits (61), Expect = 7.0
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 657 KKKLNIEETKKSLPIYPFKQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKM 716
K +NI E + P P ++ + V + G+GK+ Q + D +
Sbjct: 3 HKPINILEAFAAAP--PPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLL 60
Query: 717 KIGCTQPRRVAAMS 730
++G V +
Sbjct: 61 EVGELPTGPVIYLP 74
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 269
Score = 28.2 bits (62), Expect = 7.0
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 416 CTDRRTQSPCPSCLKVFKTPK----VRAFM----GHFLTDSDDDRKERDEFSERLKNRDK 467
C +R Q L++FKT + VR+ G F+T + E ++R KN D
Sbjct: 125 CPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDD 184
Query: 468 NN 469
+
Sbjct: 185 DG 186
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 28.0 bits (62), Expect = 7.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 682 VRDHQVLIIEGETGSGKTT 700
++ +V+ I G +GSGK+T
Sbjct: 26 IKQGEVIGIVGRSGSGKST 44
>d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic
subunit {Thale cress (Arabidopsis thaliana), chloroplast
[TaxId: 3702]}
Length = 195
Score = 27.8 bits (61), Expect = 7.2
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 151 PVYSNLPTDMQTKIFLPTPPNARKV 175
PV ++P D+Q ++ +P A ++
Sbjct: 164 PVLVDVPKDIQQQLAIPNWEQAMRL 188
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 28.0 bits (62), Expect = 7.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 682 VRDHQVLIIEGETGSGKTT 700
V+D + +I+ G +G GKTT
Sbjct: 26 VKDGEFMILLGPSGCGKTT 44
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 27.7 bits (61), Expect = 7.5
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 682 VRDHQVLIIEGETGSGKTT 700
+ + + I G +G+GKTT
Sbjct: 28 IENGERFGILGPSGAGKTT 46
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 27.7 bits (61), Expect = 7.6
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 682 VRDHQVLIIEGETGSGKTT 700
V + +I G TG+GKT
Sbjct: 23 VESGEYFVILGPTGAGKTL 41
>d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 247
Score = 28.0 bits (61), Expect = 7.8
Identities = 19/193 (9%), Positives = 40/193 (20%), Gaps = 17/193 (8%)
Query: 704 QYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLGCEVGYAIRFEDCTSERTII 763
+ + G+ KMKIG + +L + E
Sbjct: 29 RGYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGI------ 82
Query: 764 KYMTDGTLHREFLSEPDLASYSVMIIDEAHPKVYVIDPGFCKQNNFNSRTGMESLTVVPI 823
+ + + D + F +
Sbjct: 83 --------AYAKMLRDYPLFWYEEVGDPLDYALQAALAEFYPGPMATGENLFSHQDARNL 134
Query: 824 SKASANQRAGRAGRVAAGKCFRLYTAWAYKHELEDNTVPEIQRINLGNAVLMLK---ALG 880
+ + + + L L+ + + I G + L LG
Sbjct: 135 LRYGGMRPDRDWLQFDCALSYGLCEYQRTLEVLKTHGWSPSRCIPHGGHQMSLNIAAGLG 194
Query: 881 INDLIHFDFLDPP 893
+ + L P
Sbjct: 195 LGGNESYPDLFQP 207
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 27.9 bits (62), Expect = 8.1
Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 10/48 (20%)
Query: 660 LNIEETKKSLPIYPFKQDLIDAVRD-------HQVLIIEGETGSGKTT 700
+ ++ K+ Y +++I A+++ + + I G +GSGK+T
Sbjct: 2 IKLKNVTKT---YKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKST 46
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 26.8 bits (59), Expect = 8.1
Identities = 9/50 (18%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 474 ATSRQDKRAYEEAAKRLKLE-AESRDKIIPKLRIESRRKYLEKRKEDKVA 522
S+++K AY + + K + + + L E +++ L + K ++
Sbjct: 54 LLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNIS 103
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 27.9 bits (62), Expect = 8.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 682 VRDHQVLIIEGETGSGKTT 700
R V+ I G +GSGK+T
Sbjct: 25 ARAGDVISIIGSSGSGKST 43
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 27.8 bits (61), Expect = 8.4
Identities = 17/95 (17%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 675 KQDLIDAVRDHQVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSAR 734
K+ + + V+++ G G+GK T + + K+ + R AA+ +
Sbjct: 2 KEPKVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQ 61
Query: 735 VAEEMGVKLGCEVGYAIRFEDCTSERTIIKYMTDG 769
+ +++GV + E G +R + K++++
Sbjct: 62 LGQQIGVPVYGEPGEKDVVGIA--KRGVEKFLSEK 94
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 27.6 bits (61), Expect = 8.9
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 682 VRDHQVLIIEGETGSGKTT 700
+ + + ++ G +G GK+T
Sbjct: 23 IHEGEFVVFVGPSGCGKST 41
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 27.4 bits (61), Expect = 9.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 682 VRDHQVLIIEGETGSGKTT 700
++D + L++ G +G GKTT
Sbjct: 29 IKDGEFLVLLGPSGCGKTT 47
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 27.6 bits (60), Expect = 9.5
Identities = 15/152 (9%), Positives = 38/152 (25%), Gaps = 5/152 (3%)
Query: 686 QVLIIEGETGSGKTTQIPQYLHEAGFTKDKMKIGCTQPRRVAAMSVSARVAEEMGVKLG- 744
+++ G TG+GKT + +++ A K + + R A G+
Sbjct: 27 SIILATGATGTGKTLLVSRFVENAC----ANKERAILFAYEESRAQLLRNAYSWGMDFEE 82
Query: 745 CEVGYAIRFEDCTSERTIIKYMTDGTLHREFLSEPDLASYSVMIIDEAHPKVYVIDPGFC 804
E ++ E ++ +P + +
Sbjct: 83 MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVI 142
Query: 805 KQNNFNSRTGMESLTVVPISKASANQRAGRAG 836
+ + + L + +
Sbjct: 143 GVTGYAKQEEITGLFTNTSDQFMGAHSITDSH 174
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.394
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,914,800
Number of extensions: 239546
Number of successful extensions: 905
Number of sequences better than 10.0: 1
Number of HSP's gapped: 891
Number of HSP's successfully gapped: 97
Length of query: 1320
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1224
Effective length of database: 1,089,516
Effective search space: 1333567584
Effective search space used: 1333567584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.2 bits)