Query psy1909
Match_columns 92
No_of_seqs 110 out of 1015
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 19:23:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1909.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1909hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1381|consensus 99.9 1.6E-28 3.5E-33 182.7 5.5 87 1-87 234-320 (353)
2 PRK12895 ubiA prenyltransferas 99.9 3.6E-25 7.9E-30 164.9 7.9 86 1-87 169-255 (286)
3 PRK12873 ubiA prenyltransferas 99.9 6.8E-24 1.5E-28 158.7 7.5 86 1-86 180-265 (294)
4 PRK13106 ubiA prenyltransferas 99.9 2E-22 4.4E-27 150.9 8.5 84 1-84 187-270 (300)
5 PLN02809 4-hydroxybenzoate non 99.9 3.1E-22 6.8E-27 149.1 7.1 86 2-87 177-262 (289)
6 PRK12876 ubiA prenyltransferas 99.8 3.6E-21 7.8E-26 144.5 7.9 82 2-83 183-268 (300)
7 PRK12870 ubiA 4-hydroxybenzoat 99.8 4.7E-21 1E-25 142.5 8.5 86 1-86 176-261 (290)
8 PRK12888 ubiA prenyltransferas 99.8 4.1E-21 8.9E-26 142.7 7.8 87 2-88 170-257 (284)
9 PRK12848 ubiA 4-hydroxybenzoat 99.7 1E-17 2.2E-22 123.9 8.7 85 2-86 173-257 (282)
10 TIGR01474 ubiA_proteo 4-hydrox 99.7 1.7E-17 3.7E-22 122.8 8.0 86 1-86 170-255 (281)
11 PRK12847 ubiA 4-hydroxybenzoat 99.7 2.7E-17 5.9E-22 121.6 8.4 85 2-86 176-260 (285)
12 PRK12878 ubiA 4-hydroxybenzoat 99.7 4.5E-17 9.9E-22 122.6 7.9 86 1-86 202-287 (314)
13 COG0382 UbiA 4-hydroxybenzoate 99.7 3.9E-17 8.4E-22 120.8 7.4 87 1-87 177-264 (289)
14 PRK12874 ubiA prenyltransferas 99.7 7.7E-17 1.7E-21 120.2 8.3 84 2-85 178-262 (291)
15 PRK12886 ubiA prenyltransferas 99.7 1.7E-16 3.7E-21 118.3 8.4 85 2-86 173-258 (291)
16 TIGR01475 ubiA_other putative 99.7 3.6E-16 7.8E-21 115.3 8.5 85 2-86 169-254 (282)
17 PRK12392 bacteriochlorophyll c 99.6 7.3E-15 1.6E-19 111.5 6.5 82 2-83 191-273 (331)
18 PRK12871 ubiA prenyltransferas 99.5 6E-15 1.3E-19 110.4 5.2 85 2-88 186-272 (297)
19 PRK04375 protoheme IX farnesyl 99.5 5E-14 1.1E-18 104.9 6.9 85 2-86 178-264 (296)
20 TIGR01473 cyoE_ctaB protoheme 99.5 1.5E-13 3.4E-18 101.3 6.7 83 2-84 169-253 (280)
21 PRK12884 ubiA prenyltransferas 99.4 8.5E-13 1.8E-17 96.9 7.2 84 2-85 166-251 (279)
22 PRK13595 ubiA prenyltransferas 99.3 2.3E-12 4.9E-17 96.8 6.7 73 1-79 179-252 (292)
23 PRK12882 ubiA prenyltransferas 99.3 4.1E-12 8.8E-17 93.4 7.6 84 2-86 168-254 (276)
24 PRK12887 ubiA tocopherol phyty 99.3 4.8E-12 1E-16 95.2 7.6 85 2-86 193-281 (308)
25 PRK09573 (S)-2,3-di-O-geranylg 99.3 1.2E-11 2.6E-16 91.1 6.6 83 2-85 165-250 (279)
26 PRK12875 ubiA prenyltransferas 99.2 2.2E-11 4.9E-16 90.7 5.5 58 2-59 176-234 (282)
27 PRK12869 ubiA protoheme IX far 99.1 1.4E-10 3.1E-15 85.8 6.8 83 2-85 170-254 (279)
28 PRK13105 ubiA prenyltransferas 99.1 4.7E-10 1E-14 83.8 7.1 54 2-55 171-225 (282)
29 PRK12883 ubiA prenyltransferas 99.0 1.4E-09 3.1E-14 80.0 7.3 83 2-85 165-248 (277)
30 PRK06080 1,4-dihydroxy-2-napht 99.0 9E-10 1.9E-14 81.4 6.0 82 2-84 179-261 (293)
31 PRK12872 ubiA prenyltransferas 98.9 7.5E-09 1.6E-13 76.0 7.9 85 2-86 172-257 (285)
32 PRK07566 bacteriochlorophyll/c 98.9 5E-09 1.1E-13 78.8 6.6 81 2-82 200-281 (314)
33 PLN02776 prenyltransferase 98.8 9.8E-09 2.1E-13 78.7 6.3 85 2-86 162-249 (341)
34 PRK13362 protoheme IX farnesyl 98.8 1.2E-08 2.6E-13 76.8 6.4 65 2-66 181-246 (306)
35 PLN00012 chlorophyll synthetas 98.8 1.3E-08 2.8E-13 78.7 6.7 79 2-81 263-343 (375)
36 PRK05951 ubiA prenyltransferas 98.8 1E-08 2.2E-13 76.6 5.5 84 2-85 182-268 (296)
37 TIGR02056 ChlG chlorophyll syn 98.6 1.5E-07 3.3E-12 70.6 7.4 35 2-36 194-228 (306)
38 TIGR01476 chlor_syn_BchG bacte 98.6 1.6E-07 3.6E-12 69.3 6.7 61 2-62 172-233 (283)
39 PF01040 UbiA: UbiA prenyltran 98.0 2.3E-05 5.1E-10 55.6 6.8 34 5-38 160-193 (257)
40 PLN02878 homogentisate phytylt 97.5 0.00072 1.6E-08 50.9 7.8 81 6-86 171-255 (280)
41 TIGR00751 menA 1,4-dihydroxy-2 97.4 0.00056 1.2E-08 51.1 6.4 38 10-47 183-221 (284)
42 COG1575 MenA 1,4-dihydroxy-2-n 97.4 0.00059 1.3E-08 51.9 6.1 75 12-87 197-272 (303)
43 TIGR02235 menA_cyano-plnt 1,4- 97.3 0.00065 1.4E-08 50.8 6.1 37 12-48 182-219 (285)
44 PRK13591 ubiA prenyltransferas 97.2 0.00051 1.1E-08 52.2 4.4 47 9-55 197-244 (307)
45 PRK07419 1,4-dihydroxy-2-napht 97.2 0.00089 1.9E-08 50.6 5.4 38 12-49 195-233 (304)
46 PRK13387 1,4-dihydroxy-2-napht 97.1 0.00095 2.1E-08 50.6 5.0 40 12-51 210-250 (317)
47 PLN02922 prenyltransferase 96.9 0.0038 8.2E-08 47.4 6.4 38 13-50 210-248 (315)
48 PRK13592 ubiA prenyltransferas 93.3 0.28 6.1E-06 37.4 5.7 68 7-79 191-260 (299)
49 KOG4581|consensus 66.9 5.4 0.00012 30.2 2.5 22 14-35 252-273 (359)
50 PF13829 DUF4191: Domain of un 66.3 35 0.00077 25.1 6.6 41 38-79 30-70 (224)
51 COG1288 Predicted membrane pro 48.2 30 0.00065 28.2 3.9 40 11-50 249-290 (481)
52 PRK12884 ubiA prenyltransferas 42.5 64 0.0014 23.4 4.7 25 9-34 55-79 (279)
53 PRK09573 (S)-2,3-di-O-geranylg 39.5 96 0.0021 22.6 5.3 24 9-33 55-78 (279)
54 PLN02809 4-hydroxybenzoate non 38.3 60 0.0013 24.3 4.1 27 9-35 63-90 (289)
55 PF01040 UbiA: UbiA prenyltran 37.7 1.1E+02 0.0023 21.3 5.1 25 11-35 43-68 (257)
56 PRK09546 zntB zinc transporter 36.5 1.8E+02 0.0039 21.7 6.7 12 62-73 299-310 (324)
57 COG1755 Uncharacterized protei 35.7 1E+02 0.0022 21.9 4.6 32 28-59 34-65 (172)
58 COG0109 CyoE Polyprenyltransfe 34.4 2.2E+02 0.0047 22.0 6.6 71 13-85 197-271 (304)
59 PRK12882 ubiA prenyltransferas 34.2 1.4E+02 0.0031 21.6 5.5 26 9-35 56-81 (276)
60 PF10724 DUF2516: Protein of u 31.5 86 0.0019 20.2 3.4 20 32-51 42-62 (100)
61 TIGR01476 chlor_syn_BchG bacte 31.4 48 0.001 24.3 2.6 23 9-32 56-78 (283)
62 PF04298 Zn_peptidase_2: Putat 29.0 63 0.0014 23.7 2.8 22 12-33 100-121 (222)
63 TIGR02549 CRISPR_DxTHG CRISPR- 28.3 18 0.00039 17.9 -0.1 15 18-32 4-18 (26)
64 PRK12883 ubiA prenyltransferas 27.5 1.4E+02 0.003 21.8 4.4 24 9-33 55-78 (277)
65 PRK13554 fumarate reductase cy 27.4 95 0.0021 22.9 3.5 38 17-54 179-217 (241)
66 PRK12887 ubiA tocopherol phyty 27.3 2.1E+02 0.0045 21.6 5.4 23 10-33 72-94 (308)
67 COG0382 UbiA 4-hydroxybenzoate 27.1 1.2E+02 0.0025 22.3 4.0 30 13-42 69-99 (289)
68 PF03213 Pox_P35: Poxvirus P35 26.9 65 0.0014 25.0 2.6 30 30-59 283-312 (325)
69 PRK12873 ubiA prenyltransferas 25.6 2E+02 0.0042 21.8 5.0 24 12-35 65-89 (294)
70 COG1656 Uncharacterized conser 25.5 20 0.00043 25.3 -0.4 16 4-20 24-39 (165)
71 PHA01486 nonstructural protein 24.4 38 0.00082 17.1 0.6 19 16-34 3-21 (32)
72 PHA02688 ORF059 IMV protein VP 23.6 81 0.0018 24.5 2.6 30 30-59 281-310 (323)
73 PRK03007 deoxyguanosinetriphos 23.6 45 0.00099 26.6 1.3 21 8-28 217-237 (428)
74 TIGR01353 dGTP_triPase deoxygu 22.7 47 0.001 26.0 1.2 20 8-27 197-216 (381)
75 PF01927 Mut7-C: Mut7-C RNAse 22.6 22 0.00048 23.8 -0.6 16 4-20 18-33 (147)
76 PRK01286 deoxyguanosinetriphos 22.5 45 0.00096 25.8 1.0 20 8-27 177-196 (336)
77 cd00581 QFR_TypeB_TM Quinol:fu 20.4 1.9E+02 0.004 20.6 3.8 15 19-33 157-171 (206)
78 PRK07566 bacteriochlorophyll/c 20.1 2.6E+02 0.0057 20.9 4.8 25 8-33 82-106 (314)
No 1
>KOG1381|consensus
Probab=99.95 E-value=1.6e-28 Score=182.66 Aligned_cols=87 Identities=41% Similarity=0.725 Sum_probs=84.9
Q ss_pred CcchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909 1 MQHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH 80 (92)
Q Consensus 1 ~~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~ 80 (92)
.+||+.||||||||||+||+|+||||+|++||+++|+++..+.+.++..+..+|..++++|+||+++++.+.++.+|++.
T Consensus 234 v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~a~~ia~La~aG~~s~q~~pyy~~lg~~~~~L~~~i~~ 313 (353)
T KOG1381|consen 234 VCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFGAAQIASLAAAGIASDQTWPYYAALGAVAARLGSQIYK 313 (353)
T ss_pred hhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhhhHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhheee
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCcc
Q psy1909 81 LDIVFLG 87 (92)
Q Consensus 81 ~~~~~~~ 87 (92)
+|+||.+
T Consensus 314 vdiDnp~ 320 (353)
T KOG1381|consen 314 VDIDNPS 320 (353)
T ss_pred eecCChH
Confidence 9999876
No 2
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.92 E-value=3.6e-25 Score=164.93 Aligned_cols=86 Identities=21% Similarity=0.033 Sum_probs=78.9
Q ss_pred CcchhhhhhhccccChHhHHHcCchHHHHHhccchHH-HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Q psy1909 1 MQHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKL-YLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIY 79 (92)
Q Consensus 1 ~~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~ 79 (92)
++|+++|||+||+||+|||+|+|+||+|++||++++. +...+++.++.++...|...+ +++||+++++.+.+++|||.
T Consensus 169 ~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~-~~~y~~~~~~~~~~l~~q~~ 247 (286)
T PRK12895 169 SLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR-TLWYLAALIIIYTLVIYQHL 247 (286)
T ss_pred HHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999988765 556899999999999998887 89999999999999999999
Q ss_pred HhccCCcc
Q psy1909 80 HLDIVFLG 87 (92)
Q Consensus 80 ~~~~~~~~ 87 (92)
++|++|.+
T Consensus 248 ~~~~~~~~ 255 (286)
T PRK12895 248 IIDPRNPI 255 (286)
T ss_pred HhcCCCHH
Confidence 99988764
No 3
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=99.90 E-value=6.8e-24 Score=158.74 Aligned_cols=86 Identities=14% Similarity=0.093 Sum_probs=82.4
Q ss_pred CcchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909 1 MQHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH 80 (92)
Q Consensus 1 ~~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~ 80 (92)
++|+.+|||+||+||+|||+|+|+||+|+++|++++.++..+|+.+++++..+|+..++|++||+++++.+.++.+||..
T Consensus 180 ~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~~~~~~~~~~~~~ll~~~g~~~~l~~~y~~~~~~~~~~l~~~~~~ 259 (294)
T PRK12873 180 LLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNALKTVQICYFLTSIFLALAAFIAQVGFIFWPFWLIASIGMQRDILK 259 (294)
T ss_pred HHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCc
Q psy1909 81 LDIVFL 86 (92)
Q Consensus 81 ~~~~~~ 86 (92)
+|+++.
T Consensus 260 ~~~~~~ 265 (294)
T PRK12873 260 LFPEKQ 265 (294)
T ss_pred hCcCcc
Confidence 998764
No 4
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.87 E-value=2e-22 Score=150.90 Aligned_cols=84 Identities=15% Similarity=0.038 Sum_probs=80.2
Q ss_pred CcchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909 1 MQHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH 80 (92)
Q Consensus 1 ~~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~ 80 (92)
++|+++|||+|++||+|||+|.|+||+|++||++++.++..++..+++++...|+..++|++||+++.+...++.+|+..
T Consensus 187 ~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G~~a~~~~~~~~~~~v~l~~~~~~~~~lg~~y~~~~~~~~~~l~~~~~~ 266 (300)
T PRK13106 187 ILWAAGFDLYNHIPDAEFDREMGLHSFAVVLGKWALTFAGLNQLFSVVLDLLGDLYYGLGPIAIAATILHGLIMAYAYYL 266 (300)
T ss_pred HHHHHHHHHHHHccchhhHHHCCCCccHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred hccC
Q psy1909 81 LDIV 84 (92)
Q Consensus 81 ~~~~ 84 (92)
++++
T Consensus 267 ~~~~ 270 (300)
T PRK13106 267 ASKK 270 (300)
T ss_pred hCCc
Confidence 8876
No 5
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.87 E-value=3.1e-22 Score=149.12 Aligned_cols=86 Identities=37% Similarity=0.637 Sum_probs=80.9
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHh
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYHL 81 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~~ 81 (92)
+|+.+|||+||+||+|||+|.|+||+|+++|++++.++..++..+..++..+|+..+++++||+++.+.+.++.+|+..+
T Consensus 177 ~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~v 256 (289)
T PLN02809 177 CWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTGFGAASIGGLALSGYNAGLGWPYYAGLAAAAGHLAWQIQTV 256 (289)
T ss_pred HHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHc
Confidence 69999999999999999999999999999999988888889999999999999999999999999999999999999999
Q ss_pred ccCCcc
Q psy1909 82 DIVFLG 87 (92)
Q Consensus 82 ~~~~~~ 87 (92)
|+++.+
T Consensus 257 ~~~~~~ 262 (289)
T PLN02809 257 DLSSRA 262 (289)
T ss_pred CCCCHH
Confidence 987653
No 6
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.84 E-value=3.6e-21 Score=144.49 Aligned_cols=82 Identities=20% Similarity=0.075 Sum_probs=68.1
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHH-HHHH
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTK-LYLSGFGGVMMSSLVTCGILSGQTWPYFL-SLSLIGSHL-ASQI 78 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~-~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~l~~~~~~l-~~q~ 78 (92)
+|+++|||+||+||+|||+|.|+||+|++||+++. .++..++..+++++..+|+..+++++||. ++++.+..+ .+||
T Consensus 183 ~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~~~y~~~~~~~~~~l~~~~~ 262 (300)
T PRK12876 183 MIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKKIFYLCSLVPLTVILKTIKH 262 (300)
T ss_pred HHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 57779999999999999999999999999998764 67889999999999999999999988554 665444444 4555
Q ss_pred -HHhcc
Q psy1909 79 -YHLDI 83 (92)
Q Consensus 79 -~~~~~ 83 (92)
++++.
T Consensus 263 ~~~~~~ 268 (300)
T PRK12876 263 YSLIDK 268 (300)
T ss_pred HHHcCC
Confidence 77743
No 7
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.84 E-value=4.7e-21 Score=142.53 Aligned_cols=86 Identities=23% Similarity=0.324 Sum_probs=79.9
Q ss_pred CcchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909 1 MQHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH 80 (92)
Q Consensus 1 ~~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~ 80 (92)
.+|+.++|++||+||+|||+|.|+||+|+++|+++...+..++..+..++..+|+..|++++||+++++...++.+|+..
T Consensus 176 ~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~~~l~~~~~~ 255 (290)
T PRK12870 176 VFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGFLAILGVLLELHLPFWIGLAIAAVLWARQYRR 255 (290)
T ss_pred HHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred hccCCc
Q psy1909 81 LDIVFL 86 (92)
Q Consensus 81 ~~~~~~ 86 (92)
+++|+.
T Consensus 256 ~~~~~~ 261 (290)
T PRK12870 256 LRQANL 261 (290)
T ss_pred hcccCC
Confidence 966544
No 8
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.84 E-value=4.1e-21 Score=142.69 Aligned_cols=87 Identities=16% Similarity=0.117 Sum_probs=80.1
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTK-LYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH 80 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~-~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~ 80 (92)
+|+.++|++|++||+|||+|.|+||+|+++|++.. .+...++..+.+++...|...+++++||+++++.+.+++||++.
T Consensus 170 ~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~y~~~~~~~~~~l~~~~~~ 249 (284)
T PRK12888 170 LWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGALWWIGLAITAGAFAYEHAI 249 (284)
T ss_pred HHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999998754 45778999999999999999999999999999999999999999
Q ss_pred hccCCccc
Q psy1909 81 LDIVFLGL 88 (92)
Q Consensus 81 ~~~~~~~~ 88 (92)
+|+++.++
T Consensus 250 ~~~~~~~~ 257 (284)
T PRK12888 250 VSPTDLSR 257 (284)
T ss_pred cCccCHHH
Confidence 99987653
No 9
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.74 E-value=1e-17 Score=123.93 Aligned_cols=85 Identities=28% Similarity=0.353 Sum_probs=78.6
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHh
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYHL 81 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~~ 81 (92)
+|+..+|++||+||+|||+|.|+||+|+++|++....+..++..+..++...++..++++.|++++++....+.+|+..+
T Consensus 173 ~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 252 (282)
T PRK12848 173 LWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLAWAGWLLGLGWAYYWGLLVAAALFVYQQKLI 252 (282)
T ss_pred HHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHc
Confidence 79999999999999999999999999999998877777788999999999999999999999999999999999999998
Q ss_pred ccCCc
Q psy1909 82 DIVFL 86 (92)
Q Consensus 82 ~~~~~ 86 (92)
|.++.
T Consensus 253 ~~~~~ 257 (282)
T PRK12848 253 RDRER 257 (282)
T ss_pred CCCCH
Confidence 87654
No 10
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.72 E-value=1.7e-17 Score=122.77 Aligned_cols=86 Identities=34% Similarity=0.454 Sum_probs=78.3
Q ss_pred CcchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909 1 MQHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH 80 (92)
Q Consensus 1 ~~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~ 80 (92)
.+|+.++|++|++||+|||+|.|+||+|+++|++...+...++..+..++...++..+.+++|++++.+....+.+|+..
T Consensus 170 ~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 249 (281)
T TIGR01474 170 ILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAGLGPVYYLGLAAAALLLIRQIAT 249 (281)
T ss_pred HHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999888888888899988888999999999999999988899999999998
Q ss_pred hccCCc
Q psy1909 81 LDIVFL 86 (92)
Q Consensus 81 ~~~~~~ 86 (92)
+++++.
T Consensus 250 ~~~~~~ 255 (281)
T TIGR01474 250 LDIRDP 255 (281)
T ss_pred hCCCCH
Confidence 876543
No 11
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.72 E-value=2.7e-17 Score=121.58 Aligned_cols=85 Identities=26% Similarity=0.297 Sum_probs=76.2
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHh
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYHL 81 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~~ 81 (92)
+|+.++|++||+||+|||+|.|+||+|+++|++.......+...+..++..+++..|.+++||.++.+...++.+|+..+
T Consensus 176 ~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 255 (285)
T PRK12847 176 FWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHNIFYLAILAAAGIFYYQYKLL 255 (285)
T ss_pred HHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999998877777777788888888899999999999988777788999999999
Q ss_pred ccCCc
Q psy1909 82 DIVFL 86 (92)
Q Consensus 82 ~~~~~ 86 (92)
|+++.
T Consensus 256 ~~~~~ 260 (285)
T PRK12847 256 DFDNP 260 (285)
T ss_pred CCCCH
Confidence 87764
No 12
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.70 E-value=4.5e-17 Score=122.56 Aligned_cols=86 Identities=34% Similarity=0.341 Sum_probs=76.6
Q ss_pred CcchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909 1 MQHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH 80 (92)
Q Consensus 1 ~~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~ 80 (92)
++|+.++|++|++||+|||+|.|+||+|+++|++....+..++.....++..++...++++.|+++++.....+.+|+..
T Consensus 202 ~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (314)
T PRK12878 202 IAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLMGLAFWLAGVPLLALLGLLAAAAHLAWQIAR 281 (314)
T ss_pred HHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999987777778888888888888888899999988877777889999999
Q ss_pred hccCCc
Q psy1909 81 LDIVFL 86 (92)
Q Consensus 81 ~~~~~~ 86 (92)
+|+++.
T Consensus 282 ~~~~~~ 287 (314)
T PRK12878 282 LDIDDP 287 (314)
T ss_pred cccCCh
Confidence 876654
No 13
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.70 E-value=3.9e-17 Score=120.85 Aligned_cols=87 Identities=29% Similarity=0.222 Sum_probs=76.3
Q ss_pred CcchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHH
Q psy1909 1 MQHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTW-PYFLSLSLIGSHLASQIY 79 (92)
Q Consensus 1 ~~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-~~~~~l~~~~~~l~~q~~ 79 (92)
++|++++|++|++||+|+|++.|+||+|+.||+++...+..+.....+++..+++..+... +|+.++...+..+.+|+.
T Consensus 177 ~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (289)
T COG0382 177 ILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAGLLGLIYLLGLLVAALLLLYQIL 256 (289)
T ss_pred HHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999988777766666688888888899988886 788899999999999999
Q ss_pred HhccCCcc
Q psy1909 80 HLDIVFLG 87 (92)
Q Consensus 80 ~~~~~~~~ 87 (92)
.++.++.+
T Consensus 257 ~~~~~~~~ 264 (289)
T COG0382 257 IVDVRDPP 264 (289)
T ss_pred HhcccChH
Confidence 99876543
No 14
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.69 E-value=7.7e-17 Score=120.19 Aligned_cols=84 Identities=17% Similarity=0.047 Sum_probs=74.6
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKT-KLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH 80 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~ 80 (92)
+|+.++|++|++||+|||+|.|+||+|+++|++. ......++..+.+++...+...+.++.+++++.+.+.++.+|++.
T Consensus 178 ~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 257 (291)
T PRK12874 178 FWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLGLFAYLGVIVSALILLYEHYL 257 (291)
T ss_pred HHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999775 445678888888888888888888888889999999999999999
Q ss_pred hccCC
Q psy1909 81 LDIVF 85 (92)
Q Consensus 81 ~~~~~ 85 (92)
++.++
T Consensus 258 ~~~~~ 262 (291)
T PRK12874 258 VRKDF 262 (291)
T ss_pred hcCCC
Confidence 86543
No 15
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.68 E-value=1.7e-16 Score=118.25 Aligned_cols=85 Identities=22% Similarity=0.129 Sum_probs=74.5
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccchHH-HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKL-YLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH 80 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~ 80 (92)
+|+.++|++||+||+|||+|.|+||+|+++|++... ....++..++.+....+...+.++.|+++..+....+.+|++.
T Consensus 173 lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~ 252 (291)
T PRK12886 173 FWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGPWFLAGLAVTGILLLYEHWL 252 (291)
T ss_pred HHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999987544 4557888888888888988999999998877788888899999
Q ss_pred hccCCc
Q psy1909 81 LDIVFL 86 (92)
Q Consensus 81 ~~~~~~ 86 (92)
++++|.
T Consensus 253 ~~~~~~ 258 (291)
T PRK12886 253 LRGGDL 258 (291)
T ss_pred hCCCCh
Confidence 987763
No 16
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.66 E-value=3.6e-16 Score=115.33 Aligned_cols=85 Identities=25% Similarity=0.154 Sum_probs=76.6
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFG-DKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH 80 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG-~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~ 80 (92)
+|+.++|++|++||+|+|+|.|+||+|+++| ++++.....++..++.++...+...+.|+.|+++..+....+.+|++.
T Consensus 169 ~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~l~~~~~~ 248 (282)
T TIGR01475 169 FWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGYIALLALILIGLILAYEHYI 248 (282)
T ss_pred HHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999 557777888888999888899999999999998877777889999999
Q ss_pred hccCCc
Q psy1909 81 LDIVFL 86 (92)
Q Consensus 81 ~~~~~~ 86 (92)
+++++.
T Consensus 249 ~~~~~~ 254 (282)
T TIGR01475 249 VDPGDQ 254 (282)
T ss_pred cCCCCH
Confidence 987765
No 17
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.56 E-value=7.3e-15 Score=111.52 Aligned_cols=82 Identities=16% Similarity=0.046 Sum_probs=71.8
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccchHHHH-HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYL-SGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH 80 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~ 80 (92)
+|+.++|++|++||+|+|+|.|+||+|++||++....+ ..++..+.+++...++..++++.+|..+.+.+.++.+|.++
T Consensus 191 l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l 270 (331)
T PRK12392 191 FMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWGFTVLMYFILVGLVLNIVIQIQL 270 (331)
T ss_pred HHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999998755444 44445888888899999999999999988888999999987
Q ss_pred hcc
Q psy1909 81 LDI 83 (92)
Q Consensus 81 ~~~ 83 (92)
.|.
T Consensus 271 ~r~ 273 (331)
T PRK12392 271 YRD 273 (331)
T ss_pred HhC
Confidence 653
No 18
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.55 E-value=6e-15 Score=110.43 Aligned_cols=85 Identities=19% Similarity=0.124 Sum_probs=67.4
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHH
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVTCGILSGQTWP-YFLSLSLIGSHLASQIY 79 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~l~~~~~~l~~q~~ 79 (92)
+|+..+|++|+++|+|||+|.|+||+|+++|++ ++.++..+....+ +..++...+.|+. +|..+.+.+.++.+|.+
T Consensus 186 ~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~--l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 263 (297)
T PRK12871 186 PWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHF--LAAIFFLRELGPIALYGFLAGFVLLAGANLY 263 (297)
T ss_pred HHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999977 5556655544444 4455677788877 44555778888999999
Q ss_pred HhccCCccc
Q psy1909 80 HLDIVFLGL 88 (92)
Q Consensus 80 ~~~~~~~~~ 88 (92)
+.+.++.+.
T Consensus 264 ~~~~~~~~~ 272 (297)
T PRK12871 264 LWKEKSQDA 272 (297)
T ss_pred HhcCCCHHH
Confidence 998876644
No 19
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.50 E-value=5e-14 Score=104.93 Aligned_cols=85 Identities=11% Similarity=-0.062 Sum_probs=66.8
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHH-HHHHHHHHHHHHHH
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSG-QTWPYFL-SLSLIGSHLASQIY 79 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~-~l~~~~~~l~~q~~ 79 (92)
+|+.++|++|+++|+|||+|.|+||+|+++|++....+..++....+.+..++...+ .|+.|++ ++...+..+.+|++
T Consensus 178 lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~ 257 (296)
T PRK04375 178 LWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMAGLLYLVVALLLGAWFLYYAWR 257 (296)
T ss_pred HHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999977545554555444444455555544 7899987 57777888889999
Q ss_pred HhccCCc
Q psy1909 80 HLDIVFL 86 (92)
Q Consensus 80 ~~~~~~~ 86 (92)
.+++++.
T Consensus 258 ~~~~~~~ 264 (296)
T PRK04375 258 LYRKDDR 264 (296)
T ss_pred HhcCcCH
Confidence 9987654
No 20
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.46 E-value=1.5e-13 Score=101.25 Aligned_cols=83 Identities=10% Similarity=0.108 Sum_probs=66.7
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccchHHH-HHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHHHHH
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLY-LSGFGGVMMSSLVTCGILSGQTWPYF-LSLSLIGSHLASQIY 79 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~-~~l~~~~~~l~~q~~ 79 (92)
+|+..+|+.|++||+|||+|.|+||+|+++|++.... ....+...+.+....+...+.|+.|+ .++...+..+.+|++
T Consensus 169 ~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~ 248 (280)
T TIGR01473 169 LWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGTGWLYLIVATLLGALFLYLAFK 248 (280)
T ss_pred HHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999775444 44444554554444466677899999 578788888999999
Q ss_pred HhccC
Q psy1909 80 HLDIV 84 (92)
Q Consensus 80 ~~~~~ 84 (92)
..+++
T Consensus 249 ~~~~~ 253 (280)
T TIGR01473 249 FYRDP 253 (280)
T ss_pred HhcCC
Confidence 98776
No 21
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.40 E-value=8.5e-13 Score=96.88 Aligned_cols=84 Identities=12% Similarity=-0.049 Sum_probs=64.7
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH-H
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKT-KLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQI-Y 79 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~-~ 79 (92)
+|+.+.|++|++||+|||+|.|+||+|+++|++. ......++..+..+....+.....+++|++...+....+.+|+ +
T Consensus 166 ~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~ 245 (279)
T PRK12884 166 LMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNILYLAPVLVADLIFLYSAYS 245 (279)
T ss_pred HHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999764 4445555665555544444455567888877778888888886 5
Q ss_pred HhccCC
Q psy1909 80 HLDIVF 85 (92)
Q Consensus 80 ~~~~~~ 85 (92)
..+.++
T Consensus 246 ~~~~~~ 251 (279)
T PRK12884 246 LLRSQD 251 (279)
T ss_pred HhcCCC
Confidence 666554
No 22
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.35 E-value=2.3e-12 Score=96.76 Aligned_cols=73 Identities=21% Similarity=0.156 Sum_probs=56.2
Q ss_pred CcchhhhhhhccccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Q psy1909 1 MQHKDVLDKQSRPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIY 79 (92)
Q Consensus 1 ~~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~ 79 (92)
++|++++|++|++||.|+||+.|+||+|+++|++ +.++...+.++...++... +++....+.+....+..+.+
T Consensus 179 ~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 252 (292)
T PRK13595 179 MAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWPV------SRLTALALWLICGGMALALW 252 (292)
T ss_pred HHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHHh
Confidence 3799999999999999999999999999999965 6677777777777777664 35555545555555555544
No 23
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.34 E-value=4.1e-12 Score=93.44 Aligned_cols=84 Identities=19% Similarity=0.098 Sum_probs=59.1
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccchHHH-HHHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHH-HHHHHHHH
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLY-LSGFGGVMMSSLVTCGI-LSGQTWPYFLSLSLI-GSHLASQI 78 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~-~~~~~~~~~~~l~~~g~-~~~~~~~~~~~l~~~-~~~l~~q~ 78 (92)
+|+.++|++|++||+|+|+|.|+||+|+++|++.... ...++...+. +...++ ..+.++.|++...+. ...+.++.
T Consensus 168 l~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~ 246 (276)
T PRK12882 168 LATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVA-ASPLPYLLSTFGLWYLVLVAPADLVMLAAAY 246 (276)
T ss_pred HHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999765444 4444444443 333333 456788888765444 44444567
Q ss_pred HHhccCCc
Q psy1909 79 YHLDIVFL 86 (92)
Q Consensus 79 ~~~~~~~~ 86 (92)
+..+.++.
T Consensus 247 ~~~~~~~~ 254 (276)
T PRK12882 247 RSLKKTDP 254 (276)
T ss_pred HHHcCCCH
Confidence 77766554
No 24
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=99.33 E-value=4.8e-12 Score=95.15 Aligned_cols=85 Identities=8% Similarity=-0.043 Sum_probs=65.7
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHH--HHHHcCCcHHHH-HHHHHHHHHHHHH
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVT--CGILSGQTWPYF-LSLSLIGSHLASQ 77 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~--~g~~~~~~~~~~-~~l~~~~~~l~~q 77 (92)
+|+.++|++|+.+|+|+|++.|+||+|+++|++ +......+.....+++.. ++...+.++.++ .+..+.+.++.+|
T Consensus 193 ~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
T PRK12887 193 VFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWR 272 (308)
T ss_pred HHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999976 444444444444333333 334455677777 6888999999999
Q ss_pred HHHhccCCc
Q psy1909 78 IYHLDIVFL 86 (92)
Q Consensus 78 ~~~~~~~~~ 86 (92)
.+.+|.++.
T Consensus 273 ~~~~~~~~~ 281 (308)
T PRK12887 273 SQRVDLQDK 281 (308)
T ss_pred HhhcCcccc
Confidence 999998754
No 25
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.26 E-value=1.2e-11 Score=91.14 Aligned_cols=83 Identities=10% Similarity=-0.037 Sum_probs=59.3
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHH-H
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKT-KLYLSGFGGVMMSSLVTCGILSG-QTWPYFLSLSLIGSHLASQ-I 78 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~-~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~l~~~~~~l~~q-~ 78 (92)
+|+.++|++|.+||+|+|++.|+||+|+++|++. ......++...+.+ ....+..+ .++.|+++..+....+.++ .
T Consensus 165 ~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~ 243 (279)
T PRK09573 165 FSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVL-SPLPYFLGIFGIYYLIVVIICDILFIIAML 243 (279)
T ss_pred HHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 6999999999999999999999999999999664 44444444444443 33444444 6888887766666677777 4
Q ss_pred HHhccCC
Q psy1909 79 YHLDIVF 85 (92)
Q Consensus 79 ~~~~~~~ 85 (92)
+..+.++
T Consensus 244 ~~~~~~~ 250 (279)
T PRK09573 244 ILLKNPS 250 (279)
T ss_pred HHHcCCC
Confidence 4555443
No 26
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.21 E-value=2.2e-11 Score=90.75 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=52.1
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHcCC
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVTCGILSGQ 59 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~~g~~~~~ 59 (92)
+|+.++|++|++||+|+|+|.|+||+|+++|++ ++.+...++..+.+++..++...+.
T Consensus 176 l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~~~~~~ 234 (282)
T PRK12875 176 LWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVDLRLGA 234 (282)
T ss_pred HHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999976 6678899999999999998765544
No 27
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=99.13 E-value=1.4e-10 Score=85.82 Aligned_cols=83 Identities=12% Similarity=-0.017 Sum_probs=63.2
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH-HHHHHHHHHHH
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLS-LIGSHLASQIY 79 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~-~~~~~l~~q~~ 79 (92)
+|+.+..-..+.+|+|||+|.|+||+|+++|++ ++..+..+++.++.+....+. .+.|+.|+++.. ..+..+.+|.+
T Consensus 170 ~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~~g~~y~~~~~~~~~~~l~~~~~ 248 (279)
T PRK12869 170 LWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-YYIGLIGLILVAILSAALMATSIR 248 (279)
T ss_pred HHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHH
Confidence 477777544566999999999999999999965 666778888888887777776 788999987654 45556667776
Q ss_pred HhccCC
Q psy1909 80 HLDIVF 85 (92)
Q Consensus 80 ~~~~~~ 85 (92)
..+.++
T Consensus 249 ~~~~~~ 254 (279)
T PRK12869 249 ALLNPT 254 (279)
T ss_pred HhhCCC
Confidence 666443
No 28
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.07 E-value=4.7e-10 Score=83.78 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=48.0
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHHHHH
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVTCGI 55 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~~g~ 55 (92)
+|++++|.+|++||.|.|++.|+||.|+++|++ +..+...++....+++...+.
T Consensus 171 ~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~~ 225 (282)
T PRK13105 171 LWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALPW 225 (282)
T ss_pred HHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999955 677888899998888876553
No 29
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.00 E-value=1.4e-09 Score=79.98 Aligned_cols=83 Identities=16% Similarity=0.062 Sum_probs=56.6
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKT-KLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH 80 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~ 80 (92)
+|+...+.+|..||+|+|+|.|+||+|+++|++. +.....++...+ .........+.++.|+..+...+..+..+.+.
T Consensus 165 l~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~~~-~~~~l~~~~~~~~~y~~~~~~~~~~l~~~~~~ 243 (277)
T PRK12883 165 LVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVLTV-IASFLPVKAGIGLGYLPIIIVDAIILYAAYLV 243 (277)
T ss_pred HHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHHHHH-HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence 3667788889999999999999999999999774 443333333322 22233445566777777665666666677767
Q ss_pred hccCC
Q psy1909 81 LDIVF 85 (92)
Q Consensus 81 ~~~~~ 85 (92)
.+.++
T Consensus 244 ~~~~~ 248 (277)
T PRK12883 244 LRNPD 248 (277)
T ss_pred HhCcc
Confidence 66544
No 30
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=98.99 E-value=9e-10 Score=81.45 Aligned_cols=82 Identities=16% Similarity=0.026 Sum_probs=61.6
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH 80 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~ 80 (92)
+|+...++++.++|+|+|++.|.||.|+++|++ ++.+...+.....++.........+++.+..++ +..-...++.+.
T Consensus 179 l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~ll~l-l~~p~~~~~~~~ 257 (293)
T PRK06080 179 LLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGLASPWGLLFL-LSLPLAVKAARP 257 (293)
T ss_pred HHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHH
Confidence 689999999999999999999999999999976 577778888887777777666665655544433 333455666665
Q ss_pred hccC
Q psy1909 81 LDIV 84 (92)
Q Consensus 81 ~~~~ 84 (92)
...+
T Consensus 258 ~~~~ 261 (293)
T PRK06080 258 VLRK 261 (293)
T ss_pred HHhc
Confidence 5433
No 31
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=98.90 E-value=7.5e-09 Score=75.99 Aligned_cols=85 Identities=16% Similarity=0.051 Sum_probs=62.8
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH 80 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~ 80 (92)
+|+...+.++..+|+|.|+|.|+|+.|+++|++ ++.....++......+.........++.++..+......+.+++..
T Consensus 172 l~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (285)
T PRK12872 172 LKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLLLLVLLLLLAYVLYYIIKL 251 (285)
T ss_pred HHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 456677888889999999999999999999965 7778888888877777765554444444555566666667677777
Q ss_pred hccCCc
Q psy1909 81 LDIVFL 86 (92)
Q Consensus 81 ~~~~~~ 86 (92)
.+.++.
T Consensus 252 ~~~~~~ 257 (285)
T PRK12872 252 FAADDK 257 (285)
T ss_pred Hhcccc
Confidence 655544
No 32
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=98.88 E-value=5e-09 Score=78.84 Aligned_cols=81 Identities=16% Similarity=0.117 Sum_probs=49.5
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccchHHHH-HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYL-SGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH 80 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~ 80 (92)
+|+.+.|+++.++|+|+|++.|+||+|+++|++....+ ..+.....++........+..+.++.........+.+|...
T Consensus 200 l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 279 (314)
T PRK07566 200 LGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIALLLAWGQPLYAAIVGLLLIPQITLQDRL 279 (314)
T ss_pred HHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999998754433 33333222222111111233333234444455555666555
Q ss_pred hc
Q psy1909 81 LD 82 (92)
Q Consensus 81 ~~ 82 (92)
.+
T Consensus 280 ~~ 281 (314)
T PRK07566 280 LR 281 (314)
T ss_pred hh
Confidence 43
No 33
>PLN02776 prenyltransferase
Probab=98.82 E-value=9.8e-09 Score=78.65 Aligned_cols=85 Identities=11% Similarity=-0.148 Sum_probs=64.0
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHH--hccchHH-HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAIL--FGDKTKL-YLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQI 78 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~--fG~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~ 78 (92)
+|+..+|+.||++|+|||++.|++++|+. +|+++.. ++...+..+.+++...+.-....+.++.++++.+..+.+++
T Consensus 162 ~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~~~~~~~~a~~l~~~~l~~~~ 241 (341)
T PLN02776 162 FWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVTSSPFALEAALLTAYLAASAA 241 (341)
T ss_pred HHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999983 5666654 44555666666665555444333444467888888899999
Q ss_pred HHhccCCc
Q psy1909 79 YHLDIVFL 86 (92)
Q Consensus 79 ~~~~~~~~ 86 (92)
+.+++++.
T Consensus 242 ~~~~~~~~ 249 (341)
T PLN02776 242 SFYREPTN 249 (341)
T ss_pred HHhcCCCh
Confidence 99977654
No 34
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=98.81 E-value=1.2e-08 Score=76.82 Aligned_cols=65 Identities=8% Similarity=-0.088 Sum_probs=48.9
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHH
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQ-TWPYFLS 66 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~-~~~~~~~ 66 (92)
+|+..+|+.+|++|+|||+|.|+||.|+.+|++.......++....+.+....+..|. |+.|.+.
T Consensus 181 ~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~~~~~~s~l~~~~g~~g~~y~~~ 246 (306)
T PRK13362 181 LWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYILVFALVTALLPLAGYTGIGYLAV 246 (306)
T ss_pred HHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence 7999999999999999999999999999999764444555555555555555555554 5656543
No 35
>PLN00012 chlorophyll synthetase; Provisional
Probab=98.81 E-value=1.3e-08 Score=78.69 Aligned_cols=79 Identities=23% Similarity=0.282 Sum_probs=53.4
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHHHHHH
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFL--SLSLIGSHLASQIY 79 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~--~l~~~~~~l~~q~~ 79 (92)
+|+.+.++++.++|+|+|+|.|+||+|+++|++...++.. ....+..+..+++..+.+.++|. .+......+.+|.+
T Consensus 263 l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~-~~l~l~~l~~~~~l~~~~~~~y~~~~~~l~l~~l~~~~~ 341 (375)
T PLN00012 263 IAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICV-GSIDITQLSVAGYLLAIGKPYYALALLGLIIPQIFFQFK 341 (375)
T ss_pred HHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999999999999999765444433 33344444555666665555553 23344444445544
Q ss_pred Hh
Q psy1909 80 HL 81 (92)
Q Consensus 80 ~~ 81 (92)
..
T Consensus 342 ~~ 343 (375)
T PLN00012 342 YF 343 (375)
T ss_pred HH
Confidence 33
No 36
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=98.79 E-value=1e-08 Score=76.60 Aligned_cols=84 Identities=15% Similarity=0.049 Sum_probs=60.5
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHH---HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGF---GGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQI 78 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~---~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~ 78 (92)
+|+.....+...||+|+|+|.|.||+|+++|++...+...+ +..+...+...|.....++.+++++.....++.+|+
T Consensus 182 l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~ 261 (296)
T PRK05951 182 LLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGAALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAYALCLWQL 261 (296)
T ss_pred HHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999999997755433232 335556666666665556667777776666677777
Q ss_pred HHhccCC
Q psy1909 79 YHLDIVF 85 (92)
Q Consensus 79 ~~~~~~~ 85 (92)
+..+.++
T Consensus 262 ~~~~~~~ 268 (296)
T PRK05951 262 RKFPPDP 268 (296)
T ss_pred hhCcccc
Confidence 6655443
No 37
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=98.62 E-value=1.5e-07 Score=70.58 Aligned_cols=35 Identities=23% Similarity=0.210 Sum_probs=32.3
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccchH
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTK 36 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~ 36 (92)
+|+.+.++++.++|+|+|+|.|+||+|+++|++..
T Consensus 194 l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a 228 (306)
T TIGR02056 194 IAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETA 228 (306)
T ss_pred HHHHHHHHHHHccChHHHHHcCCcCcchhcChHHH
Confidence 58999999999999999999999999999997643
No 38
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=98.59 E-value=1.6e-07 Score=69.27 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=42.5
Q ss_pred cchhhhhhhccccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHcCCcHH
Q psy1909 2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVTCGILSGQTWP 62 (92)
Q Consensus 2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 62 (92)
+|+.+.++++.++|.|+|++.|.|++|+++|++ ++.+...+......+........+..+.
T Consensus 172 l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~ 233 (283)
T TIGR01476 172 LGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIWGQPWV 233 (283)
T ss_pred HHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence 578889999999999999999999999999976 4444444444444333332333444443
No 39
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=98.01 E-value=2.3e-05 Score=55.63 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=26.4
Q ss_pred hhhhhhccccChHhHHHcCchHHHHHhccchHHH
Q psy1909 5 DVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLY 38 (92)
Q Consensus 5 ~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~ 38 (92)
...-...-++|.|+|++.|.|+.|+++|++....
T Consensus 160 ~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 160 FAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 3334444699999999999999999999764433
No 40
>PLN02878 homogentisate phytyltransferase
Probab=97.48 E-value=0.00072 Score=50.89 Aligned_cols=81 Identities=17% Similarity=0.195 Sum_probs=51.6
Q ss_pred hhhhhccccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHcCCcH--HHH-HHHHHHHHHHHHHHHHh
Q psy1909 6 VLDKQSRPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVTCGILSGQTW--PYF-LSLSLIGSHLASQIYHL 81 (92)
Q Consensus 6 ~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~--~~~-~~l~~~~~~l~~q~~~~ 81 (92)
+-+.+=..+|.|-|++.|+||.|+++|++ +......+..+.......+|......+ ..- .+-.+.+..+.+|-+.+
T Consensus 171 ~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~rs~~v 250 (280)
T PLN02878 171 VIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRAQSV 250 (280)
T ss_pred HHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHhc
Confidence 44566678999999999999999999955 555554444444443334554443222 222 23445556677888888
Q ss_pred ccCCc
Q psy1909 82 DIVFL 86 (92)
Q Consensus 82 ~~~~~ 86 (92)
|.++.
T Consensus 251 D~~sk 255 (280)
T PLN02878 251 DLSSK 255 (280)
T ss_pred CcccH
Confidence 87543
No 41
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=97.40 E-value=0.00056 Score=51.14 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=27.3
Q ss_pred hccccChHhHHHcCchHHHHHhccch-HHHHHHHHHHHH
Q psy1909 10 QSRPRDRKEDISLGLKSTAILFGDKT-KLYLSGFGGVMM 47 (92)
Q Consensus 10 iYA~qD~~dD~k~Gv~S~A~~fG~~~-~~~~~~~~~~~~ 47 (92)
+--..|.|.|++.|-|+.|+++|++. +..-..+.....
T Consensus 183 ~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay 221 (284)
T TIGR00751 183 INNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAG 221 (284)
T ss_pred HcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHH
Confidence 34468999999999999999999764 433344433333
No 42
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=97.36 E-value=0.00059 Score=51.88 Aligned_cols=75 Identities=20% Similarity=0.047 Sum_probs=44.7
Q ss_pred cccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy1909 12 RPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYHLDIVFLG 87 (92)
Q Consensus 12 A~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~~~~~~~~ 87 (92)
-..|.|+|+|.|=|+.|+++|++ ++.+-..+......+....-......+++++. .++.-..++..+.+..+..+
T Consensus 197 NirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~~~ll~-ll~~Pl~ir~~r~v~~~~~~ 272 (303)
T COG1575 197 NLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPVWGLLF-LLALPLAIRAARPVRQNQVP 272 (303)
T ss_pred ccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH-HHHHHHHHHHHHHHHhccCc
Confidence 36899999999999999999976 55555555555555444433333334444332 23333344445556554443
No 43
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=97.34 E-value=0.00065 Score=50.81 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=26.8
Q ss_pred cccChHhHHHcCchHHHHHhccch-HHHHHHHHHHHHH
Q psy1909 12 RPRDRKEDISLGLKSTAILFGDKT-KLYLSGFGGVMMS 48 (92)
Q Consensus 12 A~qD~~dD~k~Gv~S~A~~fG~~~-~~~~~~~~~~~~~ 48 (92)
-..|+|.|++.|-|+.|+++|++. ...-..+.....+
T Consensus 182 n~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~ 219 (285)
T TIGR02235 182 HFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYV 219 (285)
T ss_pred CCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHH
Confidence 367999999999999999999764 4443444433333
No 44
>PRK13591 ubiA prenyltransferase; Provisional
Probab=97.21 E-value=0.00051 Score=52.24 Aligned_cols=47 Identities=23% Similarity=0.183 Sum_probs=35.4
Q ss_pred hhccccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHHHHH
Q psy1909 9 KQSRPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVTCGI 55 (92)
Q Consensus 9 tiYA~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~~g~ 55 (92)
++.-..|.|.|++.|.|+.|+++|++ ++.+...++....+++.....
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~ 244 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALI 244 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999955 666666666655555544333
No 45
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=97.18 E-value=0.00089 Score=50.60 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=27.0
Q ss_pred cccChHhHHHcCchHHHHHhccch-HHHHHHHHHHHHHH
Q psy1909 12 RPRDRKEDISLGLKSTAILFGDKT-KLYLSGFGGVMMSS 49 (92)
Q Consensus 12 A~qD~~dD~k~Gv~S~A~~fG~~~-~~~~~~~~~~~~~~ 49 (92)
=..|+|.|++.|.|+.|+++|++. +..-..+......+
T Consensus 195 n~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~ 233 (304)
T PRK07419 195 HFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYAL 233 (304)
T ss_pred CCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHH
Confidence 357999999999999999999764 44334443333333
No 46
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=97.12 E-value=0.00095 Score=50.58 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=28.7
Q ss_pred cccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHH
Q psy1909 12 RPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLV 51 (92)
Q Consensus 12 A~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~ 51 (92)
-..|.|.|++.|-|+.|+++|++ +...-..+.....++..
T Consensus 210 n~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~ 250 (317)
T PRK13387 210 NLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIA 250 (317)
T ss_pred CCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999976 44444554444444333
No 47
>PLN02922 prenyltransferase
Probab=96.87 E-value=0.0038 Score=47.40 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=27.4
Q ss_pred ccChHhHHHcCchHHHHHhccch-HHHHHHHHHHHHHHH
Q psy1909 13 PRDRKEDISLGLKSTAILFGDKT-KLYLSGFGGVMMSSL 50 (92)
Q Consensus 13 ~qD~~dD~k~Gv~S~A~~fG~~~-~~~~~~~~~~~~~~l 50 (92)
..|.|.|+|.|-|+.|+++|++. +.....+......+.
T Consensus 210 ~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~ 248 (315)
T PLN02922 210 FHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLL 248 (315)
T ss_pred CcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999764 444444444443333
No 48
>PRK13592 ubiA prenyltransferase; Provisional
Probab=93.26 E-value=0.28 Score=37.37 Aligned_cols=68 Identities=15% Similarity=0.067 Sum_probs=38.5
Q ss_pred hhhhccccChHhHHHcCchHHHHHhc-cchHHHHHHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHHHHH
Q psy1909 7 LDKQSRPRDRKEDISLGLKSTAILFG-DKTKLYLSGFGGVMMSSLVTCGI-LSGQTWPYFLSLSLIGSHLASQIY 79 (92)
Q Consensus 7 yDtiYA~qD~~dD~k~Gv~S~A~~fG-~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~l~~~~~~l~~q~~ 79 (92)
.+.+=...| +||++ |++|.|+++| +++..+...+....+++-..--+ ...+|+ +.+.++...+.+|..
T Consensus 191 rEI~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~s~lp~~~~g~~g~---~~l~~~~~~~l~~~~ 260 (299)
T PRK13592 191 WEVCRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILTNFALLWNISHVGV---VVLVLNVIWMTVQFE 260 (299)
T ss_pred HHHHHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHHHhhHHHHHhhhhHH---HHHHHHHHHHHHHHH
Confidence 344445689 78886 5999999999 55666666665555543111111 111222 334455556666654
No 49
>KOG4581|consensus
Probab=66.89 E-value=5.4 Score=30.16 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.0
Q ss_pred cChHhHHHcCchHHHHHhccch
Q psy1909 14 RDRKEDISLGLKSTAILFGDKT 35 (92)
Q Consensus 14 qD~~dD~k~Gv~S~A~~fG~~~ 35 (92)
.|.|.||+.|+-..|++.|+..
T Consensus 252 rd~dndr~agivtlailig~t~ 273 (359)
T KOG4581|consen 252 RDADNDREAGIVTLAILIGPTA 273 (359)
T ss_pred cccccccccCeEEEEEeecccH
Confidence 5999999999999999999754
No 50
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=66.28 E-value=35 Score=25.10 Aligned_cols=41 Identities=27% Similarity=0.400 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Q psy1909 38 YLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIY 79 (92)
Q Consensus 38 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~ 79 (92)
+.....+..++.....|+..+ +|+|++-+++..+.+.-+..
T Consensus 30 ~ml~a~l~~~~v~v~ig~l~~-~~~~~~i~gi~~g~l~am~v 70 (224)
T PF13829_consen 30 LMLGAFLGPIAVFVLIGLLFG-SWWYWLIIGILLGLLAAMIV 70 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHH
Confidence 334445566677778888888 77787655555555544443
No 51
>COG1288 Predicted membrane protein [Function unknown]
Probab=48.17 E-value=30 Score=28.21 Aligned_cols=40 Identities=20% Similarity=-0.027 Sum_probs=25.3
Q ss_pred ccccChHhHHH--cCchHHHHHhccchHHHHHHHHHHHHHHH
Q psy1909 11 SRPRDRKEDIS--LGLKSTAILFGDKTKLYLSGFGGVMMSSL 50 (92)
Q Consensus 11 YA~qD~~dD~k--~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l 50 (92)
|.++|+|+.|+ .+-+|....|-.+.|..+.++...+....
T Consensus 249 ~v~~~~~e~r~~f~~~~~~~~~Ft~~~klvL~lf~l~f~~mI 290 (481)
T COG1288 249 LVYEDDEEFRETFKVEDSGERPFTFRDKLVLLLFTLTFVIMI 290 (481)
T ss_pred ccccchHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHH
Confidence 56889999999 77777755555544555555444444433
No 52
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=42.54 E-value=64 Score=23.44 Aligned_cols=25 Identities=16% Similarity=-0.076 Sum_probs=16.1
Q ss_pred hhccccChHhHHHcCchHHHHHhccc
Q psy1909 9 KQSRPRDRKEDISLGLKSTAILFGDK 34 (92)
Q Consensus 9 tiYA~qD~~dD~k~Gv~S~A~~fG~~ 34 (92)
++--..|+|.|++.. ++=|+-=|+-
T Consensus 55 ~~Nd~~D~~~D~~~r-~~Rpl~~G~i 79 (279)
T PRK12884 55 ALNDYFDYEVDRINR-PDRPIPSGRI 79 (279)
T ss_pred HHHhhhhHhhhhccC-CCCCCCCCCC
Confidence 444567999999883 5445555543
No 53
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=39.52 E-value=96 Score=22.65 Aligned_cols=24 Identities=17% Similarity=-0.067 Sum_probs=15.4
Q ss_pred hhccccChHhHHHcCchHHHHHhcc
Q psy1909 9 KQSRPRDRKEDISLGLKSTAILFGD 33 (92)
Q Consensus 9 tiYA~qD~~dD~k~Gv~S~A~~fG~ 33 (92)
++--..|+|.|++.. ++=|+-=|+
T Consensus 55 ~iNd~~D~~iD~~~~-~~Rpl~sG~ 78 (279)
T PRK09573 55 VINDIYDIEIDKINK-PERPIPSGR 78 (279)
T ss_pred HHHhhcccccccccC-CCCCcCCCc
Confidence 455567999999765 444544443
No 54
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=38.29 E-value=60 Score=24.26 Aligned_cols=27 Identities=26% Similarity=0.145 Sum_probs=16.1
Q ss_pred hhccccChHhHHHc-CchHHHHHhccch
Q psy1909 9 KQSRPRDRKEDISL-GLKSTAILFGDKT 35 (92)
Q Consensus 9 tiYA~qD~~dD~k~-Gv~S~A~~fG~~~ 35 (92)
++--..|+|-|++. .=++=|+-=|+-+
T Consensus 63 ~~Nd~~Dr~iD~~~~RT~~RPL~sG~is 90 (289)
T PLN02809 63 TINDLLDRDIDKKVERTKLRPIASGALT 90 (289)
T ss_pred HHHhhHHhccccCCCCCCCCCCCCCCCC
Confidence 34446899999874 3344455446543
No 55
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=37.73 E-value=1.1e+02 Score=21.29 Aligned_cols=25 Identities=16% Similarity=0.012 Sum_probs=12.5
Q ss_pred ccccChHhHHHcC-chHHHHHhccch
Q psy1909 11 SRPRDRKEDISLG-LKSTAILFGDKT 35 (92)
Q Consensus 11 YA~qD~~dD~k~G-v~S~A~~fG~~~ 35 (92)
--.-|.|.|+... =+.-|+--|+-+
T Consensus 43 Nd~~D~~~D~~~~~~~~rPl~~g~i~ 68 (257)
T PF01040_consen 43 NDYFDYEEDRIHPNKPNRPLPSGRIS 68 (257)
T ss_pred hChhhhhcCcccccccCcchhHHHHh
Confidence 3456777777753 123344444333
No 56
>PRK09546 zntB zinc transporter; Reviewed
Probab=36.52 E-value=1.8e+02 Score=21.68 Aligned_cols=12 Identities=8% Similarity=-0.061 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q psy1909 62 PYFLSLSLIGSH 73 (92)
Q Consensus 62 ~~~~~l~~~~~~ 73 (92)
.|++.+++++..
T Consensus 299 gy~~~l~im~~i 310 (324)
T PRK09546 299 GFSIFCLLLVVL 310 (324)
T ss_pred hHHHHHHHHHHH
Confidence 455444444333
No 57
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.70 E-value=1e+02 Score=21.87 Aligned_cols=32 Identities=16% Similarity=0.089 Sum_probs=24.6
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHcCC
Q psy1909 28 AILFGDKTKLYLSGFGGVMMSSLVTCGILSGQ 59 (92)
Q Consensus 28 A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~ 59 (92)
|..||++.-..+.++|.+...+...=+...+-
T Consensus 34 a~E~G~~n~~~l~ilH~~~yls~ivE~~~~~~ 65 (172)
T COG1755 34 AKEYGKTNYKLLVILHTAFYLSCIVEAWLNNT 65 (172)
T ss_pred chhhCccccchHHHHHHHHHHHHHHHHHHhCC
Confidence 67899877678888898888777776777665
No 58
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=34.40 E-value=2.2e+02 Score=21.98 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=38.7
Q ss_pred ccChHhHHHcCchHHHHHhccc-hHHHHHHHH-HHHHHHHHHHHHHcCC-cHHHHH-HHHHHHHHHHHHHHHhccCC
Q psy1909 13 PRDRKEDISLGLKSTAILFGDK-TKLYLSGFG-GVMMSSLVTCGILSGQ-TWPYFL-SLSLIGSHLASQIYHLDIVF 85 (92)
Q Consensus 13 ~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~-~~~~~~l~~~g~~~~~-~~~~~~-~l~~~~~~l~~q~~~~~~~~ 85 (92)
+.=+||=++.|+-=+|+.-|++ +++-+..-. ......+... + .|. |+.|.+ +.+..+..+.+-.+..+.++
T Consensus 197 l~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~-~-~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~ 271 (304)
T COG0109 197 LKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLA-L-LGYVGYLYLVVATLLGAWFLALAWKLYRKDD 271 (304)
T ss_pred HHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHH-H-hccchhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4457888999999999999965 443222111 1122222221 1 333 345543 45556666666666655543
No 59
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=34.18 E-value=1.4e+02 Score=21.64 Aligned_cols=26 Identities=19% Similarity=0.020 Sum_probs=16.1
Q ss_pred hhccccChHhHHHcCchHHHHHhccch
Q psy1909 9 KQSRPRDRKEDISLGLKSTAILFGDKT 35 (92)
Q Consensus 9 tiYA~qD~~dD~k~Gv~S~A~~fG~~~ 35 (92)
++--..|+|-|++.. +.=|+-=|+-+
T Consensus 56 ~~Nd~~D~~iD~~~~-~~Rpl~~G~is 81 (276)
T PRK12882 56 AINDYFDREIDRINR-PDRPIPSGAVS 81 (276)
T ss_pred HHHHHhhhccccccC-CCCCcCCCCcC
Confidence 344467899998765 55555555433
No 60
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=31.49 E-value=86 Score=20.15 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=10.0
Q ss_pred ccchHHHH-HHHHHHHHHHHH
Q psy1909 32 GDKTKLYL-SGFGGVMMSSLV 51 (92)
Q Consensus 32 G~~~~~~~-~~~~~~~~~~l~ 51 (92)
||++|.+. .++.......+.
T Consensus 42 dK~tK~~Wl~Ilg~a~l~~~l 62 (100)
T PF10724_consen 42 DKRTKPFWLAILGVAALVGLL 62 (100)
T ss_pred ccccchHHHHHHHHHHHHHHH
Confidence 56677655 444444444333
No 61
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=31.39 E-value=48 Score=24.25 Aligned_cols=23 Identities=22% Similarity=0.060 Sum_probs=13.7
Q ss_pred hhccccChHhHHHcCchHHHHHhc
Q psy1909 9 KQSRPRDRKEDISLGLKSTAILFG 32 (92)
Q Consensus 9 tiYA~qD~~dD~k~Gv~S~A~~fG 32 (92)
++--..|+|.|++.+ ++=|+-=|
T Consensus 56 ~~Nd~~D~~~D~~~~-~~Rpi~~G 78 (283)
T TIGR01476 56 SINDYFDRDVDAINE-PQRPIPSG 78 (283)
T ss_pred HHHhHhhhCcccCCC-CCCCCCCC
Confidence 445566888898776 33343334
No 62
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=28.97 E-value=63 Score=23.73 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=16.7
Q ss_pred cccChHhHHHcCchHHHHHhcc
Q psy1909 12 RPRDRKEDISLGLKSTAILFGD 33 (92)
Q Consensus 12 A~qD~~dD~k~Gv~S~A~~fG~ 33 (92)
|.||.+...-..+||.-+-.-+
T Consensus 100 AiQ~a~~Y~pl~lRs~lvP~~~ 121 (222)
T PF04298_consen 100 AIQHAEGYAPLRLRSALVPVAN 121 (222)
T ss_pred HHhccccCcHHHHHHHHHHHHH
Confidence 6799999888888887654443
No 63
>TIGR02549 CRISPR_DxTHG CRISPR-associated DxTHG motif protein. This model describes a short region highly conserved between two otherwise substantially different CRISPR-associated (cas) proteins, TIGR02221 and TIGR01987. This region includes the motif [VIL]-D-x-[ST]-H-[GS].
Probab=28.29 E-value=18 Score=17.88 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=11.4
Q ss_pred hHHHcCchHHHHHhc
Q psy1909 18 EDISLGLKSTAILFG 32 (92)
Q Consensus 18 dD~k~Gv~S~A~~fG 32 (92)
.|...|.||+|...-
T Consensus 4 lDiTHGfr~~P~la~ 18 (26)
T TIGR02549 4 LDVTHGFNFMPLLAY 18 (26)
T ss_pred EEecCcccchHHHHH
Confidence 477889999987653
No 64
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=27.50 E-value=1.4e+02 Score=21.76 Aligned_cols=24 Identities=13% Similarity=-0.071 Sum_probs=14.3
Q ss_pred hhccccChHhHHHcCchHHHHHhcc
Q psy1909 9 KQSRPRDRKEDISLGLKSTAILFGD 33 (92)
Q Consensus 9 tiYA~qD~~dD~k~Gv~S~A~~fG~ 33 (92)
++--.-|+|.|++.+ ++=|+-=|+
T Consensus 55 ~~Nd~~D~~~D~~n~-~~Rpl~sG~ 78 (277)
T PRK12883 55 TINDYFDYEIDKINR-PNRPLPRGA 78 (277)
T ss_pred HHHhhhhHhccccCC-CCCCCCCCc
Confidence 344456899999765 444444443
No 65
>PRK13554 fumarate reductase cytochrome b-556 subunit; Provisional
Probab=27.41 E-value=95 Score=22.92 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=21.9
Q ss_pred HhHHHcCchHHHHHhc-cchHHHHHHHHHHHHHHHHHHH
Q psy1909 17 KEDISLGLKSTAILFG-DKTKLYLSGFGGVMMSSLVTCG 54 (92)
Q Consensus 17 ~dD~k~Gv~S~A~~fG-~~~~~~~~~~~~~~~~~l~~~g 54 (92)
+.=..+|+.|...++| ++.++..........+.+...|
T Consensus 179 ~~Hl~hGl~s~~qtwG~~~~r~~~r~~~~v~~~~~i~lG 217 (241)
T PRK13554 179 VIHAMIGLYRVAVKWGLTTNRSGLRKVAKVLIIYLLCLG 217 (241)
T ss_pred HHHHHHHHHHHHhHhccCCCcHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999 4445444443333323333333
No 66
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=27.27 E-value=2.1e+02 Score=21.56 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=13.9
Q ss_pred hccccChHhHHHcCchHHHHHhcc
Q psy1909 10 QSRPRDRKEDISLGLKSTAILFGD 33 (92)
Q Consensus 10 iYA~qD~~dD~k~Gv~S~A~~fG~ 33 (92)
+--..|+|-|+... +.-|+-=|+
T Consensus 72 iNd~~D~~iD~ink-p~rPiasG~ 94 (308)
T PRK12887 72 LNQLTDIEIDRINK-PHLPLAAGE 94 (308)
T ss_pred HhhhhhHHHHhcCC-CCCCcCCcc
Confidence 55678999998653 333443343
No 67
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=27.06 E-value=1.2e+02 Score=22.34 Aligned_cols=30 Identities=17% Similarity=-0.058 Sum_probs=18.6
Q ss_pred ccChHhHHHcCc-hHHHHHhccchHHHHHHH
Q psy1909 13 PRDRKEDISLGL-KSTAILFGDKTKLYLSGF 42 (92)
Q Consensus 13 ~qD~~dD~k~Gv-~S~A~~fG~~~~~~~~~~ 42 (92)
.-|+|.|++.-= |+=|+-=|+-+++....+
T Consensus 69 ~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~ 99 (289)
T COG0382 69 LADREIDRINPRTKNRPLPSGRVSVKEALLL 99 (289)
T ss_pred HhhhhccCCCCCccCCCCCCCCCCHHHHHHH
Confidence 468999988766 455666665554444333
No 68
>PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein. It binds to heparan sulphate on the cell surface to provide virion attachment to target cell [].; GO: 0019031 viral envelope
Probab=26.89 E-value=65 Score=25.04 Aligned_cols=30 Identities=17% Similarity=0.025 Sum_probs=18.2
Q ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHcCC
Q psy1909 30 LFGDKTKLYLSGFGGVMMSSLVTCGILSGQ 59 (92)
Q Consensus 30 ~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~ 59 (92)
.||......+.++.++.++.|+..+.-+-+
T Consensus 283 fFGlfDInv~g~~iil~ii~l~iF~vnSkl 312 (325)
T PF03213_consen 283 FFGLFDINVIGVIIILFIIILVIFDVNSKL 312 (325)
T ss_pred HcccchhHHHHHHHHHHHHHHHHhcCCchH
Confidence 466666666666666666666665554443
No 69
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=25.56 E-value=2e+02 Score=21.78 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=15.9
Q ss_pred cccChHhHHHcCc-hHHHHHhccch
Q psy1909 12 RPRDRKEDISLGL-KSTAILFGDKT 35 (92)
Q Consensus 12 A~qD~~dD~k~Gv-~S~A~~fG~~~ 35 (92)
-..|+|.|+|+-= |+=|+-=|+-+
T Consensus 65 d~~D~~iD~~~~RT~~RPl~sG~is 89 (294)
T PRK12873 65 DLWDRRIDRKVERTKNRPLARGKIS 89 (294)
T ss_pred HHHHHhhccCCCcCCCCCCCCCCCC
Confidence 3579999998876 34455556543
No 70
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=25.48 E-value=20 Score=25.27 Aligned_cols=16 Identities=13% Similarity=-0.006 Sum_probs=11.3
Q ss_pred hhhhhhhccccChHhHH
Q psy1909 4 KDVLDKQSRPRDRKEDI 20 (92)
Q Consensus 4 ~~~yDtiYA~qD~~dD~ 20 (92)
..||||.|.. +.+||.
T Consensus 24 llGydt~~~~-~~~d~~ 39 (165)
T COG1656 24 LLGYDTVYSS-NESDDE 39 (165)
T ss_pred HcCCceeeec-cCCcHH
Confidence 4799999998 444443
No 71
>PHA01486 nonstructural protein
Probab=24.35 E-value=38 Score=17.15 Aligned_cols=19 Identities=32% Similarity=0.323 Sum_probs=14.8
Q ss_pred hHhHHHcCchHHHHHhccc
Q psy1909 16 RKEDISLGLKSTAILFGDK 34 (92)
Q Consensus 16 ~~dD~k~Gv~S~A~~fG~~ 34 (92)
+.-|++-.++|+|++..+-
T Consensus 3 ksldirrdlrsiairlrkl 21 (32)
T PHA01486 3 KSLDIRRDLRSIAIRLRKL 21 (32)
T ss_pred cchhHHHHHHHHHHHHHhC
Confidence 4457888899999998753
No 72
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=23.64 E-value=81 Score=24.52 Aligned_cols=30 Identities=13% Similarity=0.016 Sum_probs=18.1
Q ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHcCC
Q psy1909 30 LFGDKTKLYLSGFGGVMMSSLVTCGILSGQ 59 (92)
Q Consensus 30 ~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~ 59 (92)
.||......+.+..++.++.|+..+..+-+
T Consensus 281 fFGlfDInv~gviiil~ii~l~IF~vnSkL 310 (323)
T PHA02688 281 FFGLFDINVIGVIIILFIIVLLIFDVNSKL 310 (323)
T ss_pred hhccchhHHHHHHHHHHHHHHHHhcCCchH
Confidence 466666666666666666666665554444
No 73
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=23.63 E-value=45 Score=26.63 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=19.1
Q ss_pred hhhccccChHhHHHcCchHHH
Q psy1909 8 DKQSRPRDRKEDISLGLKSTA 28 (92)
Q Consensus 8 DtiYA~qD~~dD~k~Gv~S~A 28 (92)
|+.|+.+|.||=.+.|+=+..
T Consensus 217 DIAY~~hDlEDai~~Gli~~~ 237 (428)
T PRK03007 217 DVAYSVHDVEDGVVSGRIDLR 237 (428)
T ss_pred HHHHhcccHHHHHHcCCCCHH
Confidence 889999999999999988755
No 74
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=22.69 E-value=47 Score=25.98 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=18.1
Q ss_pred hhhccccChHhHHHcCchHH
Q psy1909 8 DKQSRPRDRKEDISLGLKST 27 (92)
Q Consensus 8 DtiYA~qD~~dD~k~Gv~S~ 27 (92)
|+-|+.+|.||=.+.|+=|.
T Consensus 197 DIaY~~hDlEDai~~gli~~ 216 (381)
T TIGR01353 197 DIAYTVHDLEDAIKLGLLTF 216 (381)
T ss_pred HHHHHhhcHHHHHHcCCCCH
Confidence 88999999999999998774
No 75
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=22.63 E-value=22 Score=23.83 Aligned_cols=16 Identities=19% Similarity=-0.033 Sum_probs=11.6
Q ss_pred hhhhhhhccccChHhHH
Q psy1909 4 KDVLDKQSRPRDRKEDI 20 (92)
Q Consensus 4 ~~~yDtiYA~qD~~dD~ 20 (92)
..||||+|.. |.+|+.
T Consensus 18 ~lG~Dt~~~~-~~~D~~ 33 (147)
T PF01927_consen 18 LLGYDTLYSR-DIDDDE 33 (147)
T ss_pred HCCCcEEEeC-CCChHH
Confidence 3689999998 664443
No 76
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=22.50 E-value=45 Score=25.84 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=18.3
Q ss_pred hhhccccChHhHHHcCchHH
Q psy1909 8 DKQSRPRDRKEDISLGLKST 27 (92)
Q Consensus 8 DtiYA~qD~~dD~k~Gv~S~ 27 (92)
|+.|+.+|.||=.+.|+=|.
T Consensus 177 dIaY~~~DiEDai~~gli~~ 196 (336)
T PRK01286 177 EIAYNNHDIDDGIRAGLITL 196 (336)
T ss_pred HHHHHhhhHHHHHHcCCCCH
Confidence 78899999999999999775
No 77
>cd00581 QFR_TypeB_TM Quinol:fumarate reductase (QFR) Type B subfamily, transmembrane subunit; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinone oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and rhodoquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside in the transmembrane subunit. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The
Probab=20.42 E-value=1.9e+02 Score=20.64 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=10.3
Q ss_pred HHHcCchHHHHHhcc
Q psy1909 19 DISLGLKSTAILFGD 33 (92)
Q Consensus 19 D~k~Gv~S~A~~fG~ 33 (92)
=...|+.|...++|-
T Consensus 157 Hl~hG~~s~~qt~G~ 171 (206)
T cd00581 157 HGGIGLYRLAVKWGW 171 (206)
T ss_pred HHHHHHHHHHHHHcc
Confidence 345677777777773
No 78
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=20.06 E-value=2.6e+02 Score=20.91 Aligned_cols=25 Identities=20% Similarity=0.049 Sum_probs=15.6
Q ss_pred hhhccccChHhHHHcCchHHHHHhcc
Q psy1909 8 DKQSRPRDRKEDISLGLKSTAILFGD 33 (92)
Q Consensus 8 DtiYA~qD~~dD~k~Gv~S~A~~fG~ 33 (92)
.++--..|+|.|++.+ ++=|+-=|+
T Consensus 82 ~~~Nd~~D~~~D~~~~-~~Rpl~sG~ 106 (314)
T PRK07566 82 QTLNDYFDREVDAINE-PYRPIPSGA 106 (314)
T ss_pred HHHhhhhccCccccCC-CCCCCCCce
Confidence 4555677899998765 444444444
Done!