Query psy1909
Match_columns 92
No_of_seqs 110 out of 1015
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 19:23:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p87_G Ribonuclease H2 subunit 60.5 2.9 9.8E-05 19.5 0.7 15 21-35 2-16 (23)
2 3l4f_A RHO guanine nucleotide 43.5 4.6 0.00016 23.2 -0.1 27 7-33 6-32 (61)
3 2w6b_A RHO guanine nucleotide 37.0 4.5 0.00015 22.8 -0.9 28 6-33 8-35 (56)
4 2bs2_C Quinol-fumarate reducta 15.9 1.5E+02 0.0053 20.7 3.7 13 20-32 183-195 (256)
5 3bg2_A DGTP triphosphohydrolas 14.5 34 0.0012 26.2 -0.1 21 8-28 254-274 (444)
6 2pgs_A Putative deoxyguanosine 13.9 38 0.0013 26.0 -0.0 21 8-28 244-264 (451)
7 4ev6_A Magnesium transport pro 11.7 4.1E+02 0.014 18.7 5.2 17 62-78 314-330 (339)
8 3zyr_A Lectin; sugar binding p 9.9 40 0.0014 24.0 -1.0 14 7-20 138-151 (261)
9 1ko6_B Nuclear pore complex pr 9.6 74 0.0025 18.2 0.3 9 11-19 3-11 (64)
10 2ygr_A Uvrabc system protein A 9.6 61 0.0021 27.5 -0.1 9 4-12 61-69 (993)
No 1
>3p87_G Ribonuclease H2 subunit B; DNA binding, DNA replication, DNA repair, sliding clamp, PCN interacting peptide (PIP) motif, PIP-box motif, DNA clamp; 2.99A {Homo sapiens}
Probab=60.49 E-value=2.9 Score=19.51 Aligned_cols=15 Identities=40% Similarity=0.616 Sum_probs=12.6
Q ss_pred HcCchHHHHHhccch
Q psy1909 21 SLGLKSTAILFGDKT 35 (92)
Q Consensus 21 k~Gv~S~A~~fG~~~ 35 (92)
|-|.||+...||.+.
T Consensus 2 KsgMKSI~sFF~~k~ 16 (23)
T 3p87_G 2 KSGMKSIDTFFGVKN 16 (26)
T ss_pred CccchhHHHHhcccc
Confidence 569999999999654
No 2
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=43.55 E-value=4.6 Score=23.16 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=23.8
Q ss_pred hhhhccccChHhHHHcCchHHHHHhcc
Q psy1909 7 LDKQSRPRDRKEDISLGLKSTAILFGD 33 (92)
Q Consensus 7 yDtiYA~qD~~dD~k~Gv~S~A~~fG~ 33 (92)
-||+||.-|-.-+.+.+.+++-..+..
T Consensus 6 VDtVYalkDev~eLk~e~k~~k~~le~ 32 (61)
T 3l4f_A 6 VDTVYALKDEVQELRQDNKKMKKSLEE 32 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999988877763
No 3
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=37.01 E-value=4.5 Score=22.75 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=21.2
Q ss_pred hhhhhccccChHhHHHcCchHHHHHhcc
Q psy1909 6 VLDKQSRPRDRKEDISLGLKSTAILFGD 33 (92)
Q Consensus 6 ~yDtiYA~qD~~dD~k~Gv~S~A~~fG~ 33 (92)
.-||+||.-|----.+--.+.+.-.+.+
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999877777777777666653
No 4
>2bs2_C Quinol-fumarate reductase diheme cytochrome B subunit C; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: f.21.2.1 PDB: 1qlb_C* 1e7p_C* 2bs3_C* 2bs4_C*
Probab=15.94 E-value=1.5e+02 Score=20.73 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=8.2
Q ss_pred HHcCchHHHHHhc
Q psy1909 20 ISLGLKSTAILFG 32 (92)
Q Consensus 20 ~k~Gv~S~A~~fG 32 (92)
..+|+.|...++|
T Consensus 183 l~hGl~s~~qt~G 195 (256)
T 2bs2_C 183 GSVGLYRLAVKWG 195 (256)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 3456666666666
No 5
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, triphosphohydro PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis}
Probab=14.55 E-value=34 Score=26.23 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=18.3
Q ss_pred hhhccccChHhHHHcCchHHH
Q psy1909 8 DKQSRPRDRKEDISLGLKSTA 28 (92)
Q Consensus 8 DtiYA~qD~~dD~k~Gv~S~A 28 (92)
|+.|..+|.||=.+.|+=|..
T Consensus 254 DIAY~~hDlEDai~~Gli~~~ 274 (444)
T 3bg2_A 254 DICYTIIDFEDGINLGLIPEE 274 (444)
T ss_dssp HHHHHHHHHHHHHHHSSSCC-
T ss_pred HHHHhhhhHHHHHHcCCCCHH
Confidence 889999999999999987764
No 6
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd; deoxyguanosinetriphosphate triphsphohydrolase, pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas syringae PV}
Probab=13.87 E-value=38 Score=26.01 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=19.0
Q ss_pred hhhccccChHhHHHcCchHHH
Q psy1909 8 DKQSRPRDRKEDISLGLKSTA 28 (92)
Q Consensus 8 DtiYA~qD~~dD~k~Gv~S~A 28 (92)
|+.|..+|.||=.+.|+=|..
T Consensus 244 DIAY~~hDlEDai~~Gll~~~ 264 (451)
T 2pgs_A 244 DICYALIDLEDGLEMDLLDYA 264 (451)
T ss_dssp HHHHHHHHHHHHHTTTSSCHH
T ss_pred HHHHhhhhHHHHHHcCCCCHH
Confidence 889999999999999998774
No 7
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=11.69 E-value=4.1e+02 Score=18.70 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1909 62 PYFLSLSLIGSHLASQI 78 (92)
Q Consensus 62 ~~~~~l~~~~~~l~~q~ 78 (92)
.|++.+++.++..+...
T Consensus 314 gy~~~l~~m~~~~~~~~ 330 (339)
T 4ev6_A 314 GFWLVMALMVVIIMIFV 330 (339)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45654444433333333
No 8
>3zyr_A Lectin; sugar binding protein, N-glycan; HET: NAG BMA MAN GOL; 1.65A {Platypodium elegans} SCOP: b.29.1.1 PDB: 3zvx_A* 1ukg_A* 1q8o_A* 1q8q_A* 1q8s_A* 1q8v_A* 1q8p_A* 2auy_A* 2gme_A 2gmm_A* 2gmp_A* 2gn3_A* 2gn7_A* 2gnb_A* 2gnd_A* 2gnm_A* 2gnt_A 2phf_A* 2phr_A* 2pht_A* ...
Probab=9.86 E-value=40 Score=24.00 Aligned_cols=14 Identities=14% Similarity=-0.007 Sum_probs=10.7
Q ss_pred hhhhccccChHhHH
Q psy1909 7 LDKQSRPRDRKEDI 20 (92)
Q Consensus 7 yDtiYA~qD~~dD~ 20 (92)
|||.|+.|+.|+|.
T Consensus 138 FDT~~~~~n~~~Dp 151 (261)
T 3zyr_A 138 FDTFFAQNSNTWDP 151 (261)
T ss_dssp EECCCCTTTCTTSC
T ss_pred EeccccccCcCCCC
Confidence 89999988766554
No 9
>1ko6_B Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1
Probab=9.65 E-value=74 Score=18.15 Aligned_cols=9 Identities=22% Similarity=0.283 Sum_probs=0.0
Q ss_pred ccccChHhH
Q psy1909 11 SRPRDRKED 19 (92)
Q Consensus 11 YA~qD~~dD 19 (92)
|.+||-++|
T Consensus 3 YGL~DSDEE 11 (64)
T 1ko6_B 3 YGLQDSDEE 11 (64)
T ss_pred cCccccchh
No 10
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=9.60 E-value=61 Score=27.49 Aligned_cols=9 Identities=11% Similarity=-0.082 Sum_probs=0.0
Q ss_pred hhhhhhhcc
Q psy1909 4 KDVLDKQSR 12 (92)
Q Consensus 4 ~~~yDtiYA 12 (92)
+.+|||+||
T Consensus 61 SLafdtlya 69 (993)
T 2ygr_A 61 SLAFDTIFA 69 (993)
T ss_dssp HHHTTTHHH
T ss_pred HHHHHHHHH
Done!