Query psy1909
Match_columns 92
No_of_seqs 110 out of 1015
Neff 6.5
Searched_HMMs 13730
Date Fri Aug 16 19:23:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1909.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1909hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2c4ka1 c.61.1.2 (A:7-166) PRP 18.6 11 0.00079 23.4 -0.1 9 11-19 95-103 (160)
2 d1rkla_ f.23.30.1 (A:) Oligosa 16.3 58 0.0042 15.0 2.4 11 24-34 7-17 (36)
3 d1u9ya1 c.61.1.2 (A:1-155) Pho 15.6 16 0.0012 22.4 0.2 15 10-24 89-103 (155)
4 d1dkua1 c.61.1.2 (A:8-166) Pho 12.9 21 0.0015 21.9 0.1 15 10-24 91-105 (159)
5 d1ltqa1 c.108.1.9 (A:153-301) 12.5 8.3 0.0006 22.0 -1.9 27 7-33 118-148 (149)
6 d2bs2c1 f.21.2.1 (C:1-254) Fum 11.2 1.1E+02 0.008 19.7 3.4 13 20-32 183-195 (254)
7 d1v54m_ f.23.7.1 (M:) Mitochon 8.0 1.3E+02 0.0096 14.5 2.1 18 39-56 16-33 (43)
8 d1u84a_ a.230.1.1 (A:) hypothe 7.3 42 0.0031 18.6 -0.0 17 6-22 29-45 (81)
9 d1t33a1 a.4.1.9 (A:1-88) Putat 6.7 1E+02 0.0073 16.0 1.5 37 3-41 26-62 (88)
10 d1sddb1 b.6.1.3 (B:1657-1723) 5.0 1.4E+02 0.0099 15.3 1.3 17 10-26 33-49 (67)
No 1
>d2c4ka1 c.61.1.2 (A:7-166) PRPP synthetase-associated protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.60 E-value=11 Score=23.38 Aligned_cols=9 Identities=0% Similarity=0.058 Sum_probs=7.9
Q ss_pred ccccChHhH
Q psy1909 11 SRPRDRKED 19 (92)
Q Consensus 11 YA~qD~~dD 19 (92)
||.||+++.
T Consensus 95 YaRQDk~~~ 103 (160)
T d2c4ka1 95 YSKQSKMRK 103 (160)
T ss_dssp TTTTTSCCS
T ss_pred hhhcccccc
Confidence 999999875
No 2
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.25 E-value=58 Score=15.03 Aligned_cols=11 Identities=55% Similarity=0.573 Sum_probs=8.3
Q ss_pred chHHHHHhccc
Q psy1909 24 LKSTAILFGDK 34 (92)
Q Consensus 24 v~S~A~~fG~~ 34 (92)
++|+++.||--
T Consensus 7 ln~~~i~fgi~ 17 (36)
T d1rkla_ 7 LNSLAITFGIV 17 (36)
T ss_dssp GGHHHHHHHHH
T ss_pred cCcEEeehhHH
Confidence 67888888853
No 3
>d1u9ya1 c.61.1.2 (A:1-155) Phosphoribosylpyrophosphate synthetase {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=15.56 E-value=16 Score=22.39 Aligned_cols=15 Identities=13% Similarity=0.116 Sum_probs=10.8
Q ss_pred hccccChHhHHHcCc
Q psy1909 10 QSRPRDRKEDISLGL 24 (92)
Q Consensus 10 iYA~qD~~dD~k~Gv 24 (92)
-||.||+.+.-..-+
T Consensus 89 ~YaRQDr~~~~ge~i 103 (155)
T d1u9ya1 89 AYARQDKKFNPGEAI 103 (155)
T ss_dssp TTCSCSSCSSTTBCC
T ss_pred hhhccccccCCCCcc
Confidence 399999987655443
No 4
>d1dkua1 c.61.1.2 (A:8-166) Phosphoribosylpyrophosphate synthetase {Bacillus subtilis [TaxId: 1423]}
Probab=12.88 E-value=21 Score=21.93 Aligned_cols=15 Identities=20% Similarity=0.131 Sum_probs=10.2
Q ss_pred hccccChHhHHHcCc
Q psy1909 10 QSRPRDRKEDISLGL 24 (92)
Q Consensus 10 iYA~qD~~dD~k~Gv 24 (92)
-||.||+++--...|
T Consensus 91 ~YsRQDr~~~~ge~i 105 (159)
T d1dkua1 91 GYARQDRKARSREPI 105 (159)
T ss_dssp TTTTCCSCSSTTCCC
T ss_pred chhhhccccCCCCce
Confidence 399999976544444
No 5
>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=12.48 E-value=8.3 Score=22.03 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=17.6
Q ss_pred hhhhccccChHhHH----HcCchHHHHHhcc
Q psy1909 7 LDKQSRPRDRKEDI----SLGLKSTAILFGD 33 (92)
Q Consensus 7 yDtiYA~qD~~dD~----k~Gv~S~A~~fG~ 33 (92)
+|.++..-|++.|+ ++|++.+.+.+|+
T Consensus 118 ~~i~~~igD~~~dv~a~~~~Gi~~~~V~~Gd 148 (149)
T d1ltqa1 118 FDVKLAIDDRTQVVEMWRRIGVECWQVASGD 148 (149)
T ss_dssp CEEEEEEECCHHHHHHHHHTTCCEEECSCCC
T ss_pred CceEEEEcCCHHHHHHHHHCCCcEEEeCCCC
Confidence 45556667777775 4677776666664
No 6
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=11.18 E-value=1.1e+02 Score=19.70 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=9.4
Q ss_pred HHcCchHHHHHhc
Q psy1909 20 ISLGLKSTAILFG 32 (92)
Q Consensus 20 ~k~Gv~S~A~~fG 32 (92)
..+|+.|..+++|
T Consensus 183 ~~~Gl~s~~~~wG 195 (254)
T d2bs2c1 183 GSVGLYRLAVKWG 195 (254)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHHh
Confidence 3467778888887
No 7
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.00 E-value=1.3e+02 Score=14.45 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1909 39 LSGFGGVMMSSLVTCGIL 56 (92)
Q Consensus 39 ~~~~~~~~~~~l~~~g~~ 56 (92)
...+.+.++.+|.-+|+.
T Consensus 16 aigLt~~f~~~L~PaGwV 33 (43)
T d1v54m_ 16 AIGLSVTFLSFLLPAGWV 33 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHH
Confidence 445556666666666654
No 8
>d1u84a_ a.230.1.1 (A:) hypothetical protein YugE {Bacillus stearothermophilus [TaxId: 1422]}
Probab=7.35 E-value=42 Score=18.62 Aligned_cols=17 Identities=6% Similarity=0.028 Sum_probs=13.4
Q ss_pred hhhhhccccChHhHHHc
Q psy1909 6 VLDKQSRPRDRKEDISL 22 (92)
Q Consensus 6 ~yDtiYA~qD~~dD~k~ 22 (92)
..|+++|.+|.+|=.++
T Consensus 29 aadvv~AV~~~dD~~~L 45 (81)
T d1u84a_ 29 AASVLQAVYETEDARTL 45 (81)
T ss_dssp HHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhccCHHHH
Confidence 57899999998876554
No 9
>d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=6.74 E-value=1e+02 Score=15.97 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=27.3
Q ss_pred chhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHH
Q psy1909 3 HKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSG 41 (92)
Q Consensus 3 W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~ 41 (92)
..-|||. ..+|......++-.|.--.|+++...+..+
T Consensus 26 ~~~G~~~--t~~~Ia~~agvs~~~~Y~~F~sK~~L~~a~ 62 (88)
T d1t33a1 26 GEYGLHA--TTRDIAALAGQNIAAITYYFGSKEDLYLAC 62 (88)
T ss_dssp HHHGGGS--CHHHHHHHHTSCHHHHHHHHSSHHHHHHHH
T ss_pred HHhcccc--CHHHHHHHhCCChhhhhccCCCHHHHHHHH
Confidence 3446774 577888888888888888999887655544
No 10
>d1sddb1 b.6.1.3 (B:1657-1723) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.97 E-value=1.4e+02 Score=15.31 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=13.5
Q ss_pred hccccChHhHHHcCchH
Q psy1909 10 QSRPRDRKEDISLGLKS 26 (92)
Q Consensus 10 iYA~qD~~dD~k~Gv~S 26 (92)
.++|.|...|...|+..
T Consensus 33 YHsHv~~~~q~~~GL~G 49 (67)
T d1sddb1 33 YYSAVNPEKDIHSGLIG 49 (67)
T ss_dssp EECCSSHHHHHTTTCEE
T ss_pred EEcccchHHHhhCCceE
Confidence 37888988899888754
Done!