RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1909
         (92 letters)



>d3bexa2 c.55.1.13 (A:119-245) Type III pantothenate kinase, CoaX
           {Thermotoga maritima [TaxId: 2336]}
          Length = 127

 Score = 24.6 bits (53), Expect = 1.5
 Identities = 4/25 (16%), Positives = 12/25 (48%)

Query: 68  SLIGSHLASQIYHLDIVFLGLQFYC 92
            ++   +  +I+  D+   G+  +C
Sbjct: 101 KIVKDMIKHEIFDEDLTIKGVYHFC 125


>d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 209

 Score = 23.0 bits (49), Expect = 6.4
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 54 GILSGQTWPYFLSLSLIGSHLASQ 77
          G+  G  W + + +S  G H    
Sbjct: 24 GVPVGTMWRFRVQVSESGVHRPHV 47


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.141    0.427 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 313,906
Number of extensions: 11043
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 4
Length of query: 92
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 36
Effective length of database: 1,638,716
Effective search space: 58993776
Effective search space used: 58993776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)