Query psy1910
Match_columns 153
No_of_seqs 124 out of 1026
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 19:26:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02809 4-hydroxybenzoate non 100.0 2.7E-36 5.8E-41 243.5 16.1 153 1-153 13-165 (289)
2 PRK12873 ubiA prenyltransferas 100.0 1.6E-35 3.5E-40 239.0 15.8 151 1-153 14-168 (294)
3 TIGR01474 ubiA_proteo 4-hydrox 100.0 4.7E-35 1E-39 235.4 17.1 152 1-152 8-159 (281)
4 PRK12878 ubiA 4-hydroxybenzoat 100.0 2.2E-34 4.8E-39 234.7 16.4 153 1-153 37-192 (314)
5 PRK12870 ubiA 4-hydroxybenzoat 100.0 1.7E-34 3.7E-39 233.2 15.3 151 1-153 16-166 (290)
6 PRK12895 ubiA prenyltransferas 100.0 4.7E-34 1E-38 230.0 15.4 149 2-152 8-156 (286)
7 PRK12847 ubiA 4-hydroxybenzoat 100.0 1.4E-33 3E-38 227.2 17.2 151 1-152 14-164 (285)
8 PLN02776 prenyltransferase 100.0 2E-33 4.3E-38 230.4 17.3 149 3-153 1-151 (341)
9 PRK12874 ubiA prenyltransferas 100.0 2E-33 4.3E-38 227.1 16.4 151 1-152 12-166 (291)
10 PRK12848 ubiA 4-hydroxybenzoat 100.0 2.9E-33 6.4E-38 225.1 16.8 150 1-152 12-161 (282)
11 PRK12869 ubiA protoheme IX far 100.0 4.3E-33 9.4E-38 223.8 16.9 150 1-152 6-158 (279)
12 PRK13362 protoheme IX farnesyl 100.0 3.8E-33 8.3E-38 226.7 16.6 149 2-152 18-169 (306)
13 PRK12886 ubiA prenyltransferas 100.0 4E-33 8.7E-38 225.3 16.5 149 2-152 13-161 (291)
14 COG0109 CyoE Polyprenyltransfe 100.0 2.7E-34 5.9E-39 230.2 8.5 150 2-153 23-175 (304)
15 TIGR01473 cyoE_ctaB protoheme 100.0 1.3E-32 2.8E-37 221.0 17.5 151 1-152 4-157 (280)
16 PRK04375 protoheme IX farnesyl 100.0 1.8E-32 3.9E-37 221.9 16.1 149 2-152 15-166 (296)
17 PRK13106 ubiA prenyltransferas 100.0 2.3E-32 4.9E-37 221.6 15.6 149 1-151 19-167 (300)
18 PRK12888 ubiA prenyltransferas 100.0 2.4E-32 5.1E-37 220.1 15.2 150 2-152 7-158 (284)
19 TIGR01475 ubiA_other putative 100.0 4.6E-32 9.9E-37 218.0 15.5 150 1-152 6-155 (282)
20 COG0382 UbiA 4-hydroxybenzoate 100.0 9.1E-32 2E-36 216.9 16.0 150 1-152 17-166 (289)
21 PRK12876 ubiA prenyltransferas 100.0 2.2E-31 4.8E-36 215.2 16.5 141 10-150 16-164 (300)
22 KOG1381|consensus 100.0 1.7E-31 3.7E-36 210.4 2.7 153 1-153 71-223 (353)
23 PRK09573 (S)-2,3-di-O-geranylg 100.0 9.5E-29 2.1E-33 198.5 15.5 144 2-149 8-152 (279)
24 PRK12324 phosphoribose diphosp 100.0 7.8E-29 1.7E-33 200.4 15.0 151 1-152 15-166 (295)
25 PRK08238 hypothetical protein; 100.0 1.1E-27 2.3E-32 204.8 13.8 146 2-148 196-342 (479)
26 PRK12884 ubiA prenyltransferas 99.9 5.3E-27 1.1E-31 188.0 15.6 145 1-150 8-153 (279)
27 PRK12882 ubiA prenyltransferas 99.9 3.5E-26 7.5E-31 183.3 15.2 143 2-148 9-152 (276)
28 PRK12883 ubiA prenyltransferas 99.9 1.5E-25 3.3E-30 179.7 16.2 145 2-151 8-153 (277)
29 TIGR01476 chlor_syn_BchG bacte 99.9 1.2E-24 2.5E-29 175.1 15.8 145 1-147 4-156 (283)
30 PRK07566 bacteriochlorophyll/c 99.9 9.8E-25 2.1E-29 178.1 15.1 142 2-149 32-184 (314)
31 KOG1380|consensus 99.9 3.2E-27 6.9E-32 189.9 -0.9 150 1-153 98-249 (409)
32 PRK06080 1,4-dihydroxy-2-napht 99.9 3.9E-24 8.6E-29 172.6 15.6 150 2-152 8-167 (293)
33 PRK12871 ubiA prenyltransferas 99.9 3.6E-24 7.7E-29 173.6 14.4 150 2-152 10-174 (297)
34 TIGR02056 ChlG chlorophyll syn 99.9 1.1E-23 2.4E-28 171.3 15.2 146 1-152 20-182 (306)
35 PLN00012 chlorophyll synthetas 99.9 1.1E-23 2.3E-28 175.3 15.0 145 1-152 89-251 (375)
36 PRK12392 bacteriochlorophyll c 99.9 9.7E-23 2.1E-27 167.3 15.7 147 2-152 17-179 (331)
37 PRK05951 ubiA prenyltransferas 99.9 1.8E-22 4E-27 163.5 15.9 150 2-152 9-170 (296)
38 PF01040 UbiA: UbiA prenyltran 99.9 1.9E-22 4.1E-27 158.1 11.0 141 10-152 2-145 (257)
39 PRK13387 1,4-dihydroxy-2-napht 99.9 2.7E-21 5.9E-26 158.0 15.1 150 2-152 8-168 (317)
40 PRK12887 ubiA tocopherol phyty 99.9 3.5E-21 7.6E-26 156.9 15.2 139 2-143 18-165 (308)
41 PRK13595 ubiA prenyltransferas 99.9 2.2E-20 4.8E-25 150.6 16.0 142 2-150 17-168 (292)
42 TIGR00751 menA 1,4-dihydroxy-2 99.8 1.1E-19 2.3E-24 146.6 16.5 146 5-152 1-163 (284)
43 PRK13592 ubiA prenyltransferas 99.8 1.1E-18 2.4E-23 140.6 12.3 108 29-143 42-155 (299)
44 PRK12875 ubiA prenyltransferas 99.8 2.6E-18 5.7E-23 138.4 13.9 148 1-153 12-167 (282)
45 PRK13105 ubiA prenyltransferas 99.8 5.6E-18 1.2E-22 136.5 15.7 145 1-152 5-159 (282)
46 COG1575 MenA 1,4-dihydroxy-2-n 99.8 7.8E-18 1.7E-22 135.7 14.6 151 2-152 13-175 (303)
47 PRK07419 1,4-dihydroxy-2-napht 99.8 2.1E-17 4.5E-22 134.5 15.2 146 2-152 17-173 (304)
48 PLN02922 prenyltransferase 99.7 7.6E-17 1.6E-21 131.8 15.3 143 2-149 20-174 (315)
49 TIGR02235 menA_cyano-plnt 1,4- 99.7 1.2E-16 2.5E-21 129.1 14.6 147 2-153 4-161 (285)
50 PLN02878 homogentisate phytylt 99.7 4.6E-17 9.9E-22 130.3 10.7 95 33-129 23-124 (280)
51 PRK12872 ubiA prenyltransferas 99.6 5.9E-15 1.3E-19 118.5 11.3 144 2-151 9-159 (285)
52 PRK13591 ubiA prenyltransferas 99.4 4.3E-12 9.3E-17 103.1 12.2 91 43-141 68-168 (307)
53 KOG4581|consensus 98.3 6.9E-08 1.5E-12 75.8 -1.3 147 4-152 68-228 (359)
54 PRK13105 ubiA prenyltransferas 96.3 0.11 2.4E-06 42.2 12.0 85 11-103 142-226 (282)
55 TIGR01475 ubiA_other putative 96.3 0.14 3.1E-06 41.1 12.6 37 39-76 164-200 (282)
56 PRK12872 ubiA prenyltransferas 96.0 0.36 7.8E-06 38.6 13.3 50 41-94 169-218 (285)
57 PRK07419 1,4-dihydroxy-2-napht 95.3 0.45 9.8E-06 39.0 11.6 61 30-95 172-232 (304)
58 PRK12871 ubiA prenyltransferas 95.1 0.36 7.7E-06 39.4 10.4 46 30-77 173-218 (297)
59 PRK12847 ubiA 4-hydroxybenzoat 95.1 0.26 5.7E-06 39.7 9.5 46 30-77 163-208 (285)
60 PRK12875 ubiA prenyltransferas 95.1 0.6 1.3E-05 37.8 11.5 57 41-101 173-229 (282)
61 PRK12884 ubiA prenyltransferas 95.0 0.5 1.1E-05 37.7 11.0 35 41-76 163-197 (279)
62 PRK12874 ubiA prenyltransferas 95.0 0.89 1.9E-05 36.9 12.4 62 10-76 148-209 (291)
63 PLN02922 prenyltransferase 95.0 0.47 1E-05 39.0 10.8 54 36-93 191-244 (315)
64 PRK12888 ubiA prenyltransferas 94.9 1.2 2.7E-05 36.0 12.9 45 30-76 157-201 (284)
65 PRK07566 bacteriochlorophyll/c 94.8 0.65 1.4E-05 38.0 11.3 45 30-76 187-231 (314)
66 PRK13387 1,4-dihydroxy-2-napht 94.8 0.65 1.4E-05 38.2 11.2 54 38-95 194-247 (317)
67 COG1575 MenA 1,4-dihydroxy-2-n 94.5 0.81 1.8E-05 37.6 11.0 41 30-72 174-214 (303)
68 TIGR02235 menA_cyano-plnt 1,4- 94.4 0.7 1.5E-05 37.5 10.4 61 30-95 159-219 (285)
69 PRK06080 1,4-dihydroxy-2-napht 94.4 1 2.3E-05 36.2 11.4 62 30-96 166-227 (293)
70 TIGR01474 ubiA_proteo 4-hydrox 94.3 1 2.2E-05 36.3 11.1 47 30-78 158-204 (281)
71 PRK09573 (S)-2,3-di-O-geranylg 93.9 0.64 1.4E-05 37.3 9.3 35 41-76 162-196 (279)
72 PRK12878 ubiA 4-hydroxybenzoat 93.9 1.6 3.5E-05 35.8 11.7 46 30-77 190-235 (314)
73 PLN00012 chlorophyll synthetas 93.7 1.8 4E-05 36.5 12.0 45 30-76 250-294 (375)
74 PRK13591 ubiA prenyltransferas 93.6 0.8 1.7E-05 37.7 9.3 65 51-119 197-270 (307)
75 PRK12882 ubiA prenyltransferas 93.5 1.5 3.3E-05 35.0 10.8 52 39-94 163-214 (276)
76 PRK13106 ubiA prenyltransferas 92.8 0.77 1.7E-05 37.5 8.1 53 39-96 183-235 (300)
77 PRK12895 ubiA prenyltransferas 92.7 3.4 7.4E-05 33.6 11.8 39 37-76 163-201 (286)
78 TIGR00751 menA 1,4-dihydroxy-2 92.6 2.3 5E-05 34.4 10.6 60 30-94 162-221 (284)
79 PRK12887 ubiA tocopherol phyty 92.5 0.84 1.8E-05 37.4 8.0 36 39-75 188-223 (308)
80 PRK12392 bacteriochlorophyll c 92.3 1.4 3E-05 36.5 9.2 35 41-76 188-222 (331)
81 TIGR01476 chlor_syn_BchG bacte 92.3 0.96 2.1E-05 36.3 8.0 41 44-88 172-212 (283)
82 TIGR02056 ChlG chlorophyll syn 92.3 1 2.2E-05 36.8 8.2 44 44-91 194-237 (306)
83 COG0382 UbiA 4-hydroxybenzoate 91.8 3.5 7.5E-05 33.2 10.7 55 35-93 169-223 (289)
84 PRK12883 ubiA prenyltransferas 91.4 1.1 2.3E-05 35.9 7.3 33 43-76 164-196 (277)
85 PRK12870 ubiA 4-hydroxybenzoat 91.3 6.5 0.00014 31.8 11.9 49 30-80 164-212 (290)
86 PRK05951 ubiA prenyltransferas 91.2 4.8 0.0001 32.6 11.0 40 42-85 180-219 (296)
87 PRK12848 ubiA 4-hydroxybenzoat 89.9 5 0.00011 32.3 10.0 41 37-78 166-206 (282)
88 PF01040 UbiA: UbiA prenyltran 87.8 4.4 9.6E-05 31.2 8.2 24 43-66 156-179 (257)
89 PRK12886 ubiA prenyltransferas 87.6 14 0.00029 30.0 14.4 46 30-77 160-205 (291)
90 PRK13595 ubiA prenyltransferas 87.1 15 0.00033 30.0 12.2 103 43-151 179-291 (292)
91 PLN02809 4-hydroxybenzoate non 85.5 18 0.00038 29.4 10.7 38 39-77 172-209 (289)
92 PRK04375 protoheme IX farnesyl 85.0 19 0.00041 29.1 12.7 45 30-76 165-209 (296)
93 PRK12873 ubiA prenyltransferas 83.9 22 0.00048 29.0 12.4 36 40-76 177-212 (294)
94 TIGR01473 cyoE_ctaB protoheme 83.0 22 0.00048 28.4 10.6 23 53-76 178-200 (280)
95 PRK12869 ubiA protoheme IX far 81.6 25 0.00053 28.2 10.0 31 44-75 170-200 (279)
96 PLN02878 homogentisate phytylt 79.8 13 0.00028 30.3 7.7 45 43-91 166-210 (280)
97 PF14256 YwiC: YwiC-like prote 73.6 30 0.00065 24.7 13.9 115 6-141 5-124 (129)
98 COG4147 DhlC Predicted symport 70.2 5.2 0.00011 35.1 3.4 90 36-134 356-453 (529)
99 COG1968 BacA Undecaprenyl pyro 65.0 74 0.0016 25.8 8.9 22 69-92 141-162 (270)
100 TIGR00267 conserved hypothetic 63.9 58 0.0013 24.2 9.6 23 34-56 29-51 (169)
101 PRK12876 ubiA prenyltransferas 62.1 88 0.0019 25.7 11.4 30 48-78 187-216 (300)
102 PF05767 Pox_A14: Poxvirus vir 61.5 33 0.00072 23.2 5.2 45 81-125 13-73 (92)
103 PRK09597 lipid A 1-phosphatase 58.6 82 0.0018 24.2 10.1 28 32-59 76-103 (190)
104 PF11990 DUF3487: Protein of u 55.5 72 0.0016 22.6 6.9 30 69-98 13-42 (121)
105 PLN02776 prenyltransferase 55.5 1.2E+02 0.0027 25.3 13.6 42 55-97 173-216 (341)
106 PHA02898 virion envelope prote 54.6 40 0.00086 22.7 4.7 40 80-119 12-66 (92)
107 TIGR03510 XapX XapX domain. Th 52.3 24 0.00053 21.0 3.1 38 110-147 8-45 (49)
108 PHA03048 IMV membrane protein; 51.1 56 0.0012 22.0 5.0 41 80-120 12-66 (93)
109 PF14007 YtpI: YtpI-like prote 47.0 39 0.00086 22.7 3.8 46 66-112 21-67 (89)
110 COG2832 Uncharacterized protei 45.9 60 0.0013 23.0 4.8 50 76-125 67-117 (119)
111 PRK10299 PhoPQ regulatory prot 45.5 39 0.00085 19.9 3.2 18 45-62 17-34 (47)
112 PRK01821 hypothetical protein; 45.3 39 0.00086 24.4 3.9 57 9-66 71-128 (133)
113 KOG2513|consensus 43.6 38 0.00082 30.7 4.2 59 36-94 487-546 (647)
114 PF15033 Kinocilin: Kinocilin 41.7 33 0.00072 23.9 2.9 29 106-134 44-73 (124)
115 PF04547 Anoctamin: Calcium-ac 39.2 69 0.0015 27.3 5.1 47 39-85 331-378 (452)
116 PF04971 Lysis_S: Lysis protei 37.9 47 0.001 21.2 2.9 29 36-64 35-63 (68)
117 PF10954 DUF2755: Protein of u 37.7 90 0.002 21.1 4.4 63 31-96 20-86 (100)
118 PRK13362 protoheme IX farnesyl 36.4 2.4E+02 0.0051 23.0 10.0 77 13-94 154-231 (306)
119 COG4125 Predicted membrane pro 36.3 1.7E+02 0.0037 21.4 8.2 55 45-102 49-105 (149)
120 PHA02680 ORF090 IMV phosphoryl 36.1 1.4E+02 0.0029 20.1 5.4 18 81-98 13-30 (91)
121 PRK04032 hypothetical protein; 33.6 1.7E+02 0.0038 21.7 5.8 22 57-78 17-38 (159)
122 PF03300 Tenui_NS4: Tenuivirus 31.1 22 0.00047 28.4 0.7 25 60-84 27-54 (283)
123 PHA00515 hypothetical protein 29.7 16 0.00035 21.3 -0.2 27 56-82 22-48 (53)
124 PRK04125 murein hydrolase regu 28.8 63 0.0014 23.6 2.8 14 9-22 69-82 (141)
125 COG3965 Predicted Co/Zn/Cd cat 28.6 2.4E+02 0.0052 23.1 6.2 59 39-98 99-178 (314)
126 COG1295 Rbn Ribonuclease BN fa 27.4 3.3E+02 0.0073 22.0 8.3 9 112-120 202-210 (303)
127 PF05173 DapB_C: Dihydrodipico 27.3 47 0.001 23.7 1.9 28 44-71 8-36 (132)
128 TIGR00036 dapB dihydrodipicoli 25.4 1E+02 0.0022 24.4 3.7 27 44-71 137-164 (266)
129 COG0575 CdsA CDP-diglyceride s 25.3 3.4E+02 0.0075 21.4 7.2 35 45-79 138-172 (265)
130 PF07613 DUF1576: Protein of u 24.5 3.2E+02 0.007 20.8 6.2 38 115-152 92-130 (183)
131 PF11755 DUF3311: Protein of u 24.3 1.9E+02 0.0041 18.0 4.1 17 32-48 33-49 (66)
132 PF07187 DUF1405: Protein of u 24.0 3.1E+02 0.0067 20.4 6.3 20 44-63 111-130 (163)
133 PF09925 DUF2157: Predicted me 23.7 2.7E+02 0.006 19.7 5.7 25 79-103 33-57 (145)
134 PF06374 NDUF_C2: NADH-ubiquin 22.9 1.5E+02 0.0032 21.0 3.7 8 120-127 44-51 (117)
135 PF06738 DUF1212: Protein of u 22.8 2.1E+02 0.0045 21.2 4.8 58 83-140 106-167 (193)
136 PRK01658 holin-like protein; V 22.7 1.2E+02 0.0027 21.3 3.3 49 9-58 66-115 (122)
137 COG0109 CyoE Polyprenyltransfe 22.5 1.3E+02 0.0028 24.9 3.7 42 68-109 209-253 (304)
138 TIGR02711 symport_actP cation/ 21.9 5.5E+02 0.012 22.6 9.2 15 44-58 375-389 (549)
139 TIGR00788 fbt folate/biopterin 21.2 2.9E+02 0.0062 23.6 5.9 31 35-66 428-458 (468)
140 COG3152 Predicted membrane pro 20.6 3.2E+02 0.007 19.4 6.3 25 73-97 14-38 (125)
141 PF03311 Cornichon: Cornichon 20.1 1.6E+02 0.0034 21.0 3.4 24 44-67 19-42 (128)
142 PF00474 SSF: Sodium:solute sy 20.0 2.1E+02 0.0045 23.7 4.7 48 43-98 312-359 (406)
No 1
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=100.00 E-value=2.7e-36 Score=243.50 Aligned_cols=153 Identities=61% Similarity=1.070 Sum_probs=142.0
Q ss_pred CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT 80 (153)
Q Consensus 1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~ 80 (153)
+|++||+.++++.+|+.+|..+++..+..+++..+++..++.+++++++|++||++|+|+|++|+||++||+|+|++|++
T Consensus 13 ~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~ 92 (289)
T PLN02809 13 ARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKMLALFGCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPF 92 (289)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHH
Confidence 58999999999999999999988632334677778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCCC
Q psy1910 81 DAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVNE 153 (153)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~~ 153 (153)
||+.+..++.++++.+++..|+.++.++..+.++...||++||+++++|+++|+.+++++++||.+++|++++
T Consensus 93 ~A~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~lg~~~~~~~l~g~~av~g~~~~ 165 (289)
T PLN02809 93 QGVGFLGAQLLLGLGILLQLNNYSRILGASSLLLVFTYPLMKRFTFWPQAFLGLTFNWGALLGWAAVKGSLDP 165 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHhcCcchHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999999999999999888999999999999999999999999999999999998763
No 2
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.6e-35 Score=239.03 Aligned_cols=151 Identities=36% Similarity=0.626 Sum_probs=138.8
Q ss_pred CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT 80 (153)
Q Consensus 1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~ 80 (153)
||++||+..++.++|..+|..++.. ..+++...++.+++.+++++++|++||++|+|+|++|+||++||+|+|++|++
T Consensus 14 ~R~~Kp~~~~ll~~p~~~g~~la~~--~~~~~~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~ 91 (294)
T PRK12873 14 LRWNKPTGRLILLIPAGWSLWLTPS--APPSLLLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLK 91 (294)
T ss_pred hCccccchHHHHHHHHHHHHHHccC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHH
Confidence 6889999999999999999777643 23667778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCCC
Q psy1910 81 DAIIFLAGQLGAGLLILVQL----NLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVNE 153 (153)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~~ 153 (153)
||+.++.++..+++..++.. |+.++.++..++++...||++||++.++|+++|+.+++|+++||.+++|++++
T Consensus 92 ~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~~~~~~Y~~~KR~t~~~~~vlg~~~a~~~l~gw~Av~g~~~~ 168 (294)
T PRK12873 92 TAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPPILIYPSAKRWFAYPQAILALCWGFAVLIPWAAAEGSLNG 168 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhHHHHHHHHHhCCCch
Confidence 99999999999999887665 77888999988888999999999999999999999999999999999999873
No 3
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=100.00 E-value=4.7e-35 Score=235.44 Aligned_cols=152 Identities=56% Similarity=1.011 Sum_probs=140.8
Q ss_pred CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT 80 (153)
Q Consensus 1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~ 80 (153)
||++||+.+.+.++|+++|..++...++.+++...++..++.++.++++|++|||+|+|+|++|+||++||+|+|++|++
T Consensus 8 ~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~ 87 (281)
T TIGR01474 8 MRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYLLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVR 87 (281)
T ss_pred HccccHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHH
Confidence 69999999999999999999998653233567667888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910 81 DAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152 (153)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~ 152 (153)
||+.++.++.++++.+++..|+.+..+++.+.+..+.||+.||+++++++++|+.+++++++||++++|+++
T Consensus 88 ~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y~~~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~~~ 159 (281)
T TIGR01474 88 QAILFLLVQLLVALGVLLQLNPLTILLGVASLALVATYPFMKRITYWPQLVLGLAFGWGALMGWAAVTGDLS 159 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhchhcccccccHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 999999999999999999899999999999988899999999999999999999999999999999999876
No 4
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=2.2e-34 Score=234.75 Aligned_cols=153 Identities=50% Similarity=0.883 Sum_probs=140.9
Q ss_pred CccccchHHHHHHHHHHHHHHHhccCC---CCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCC
Q psy1910 1 MRLDKPIGSWLLFWPCGWSISMAAVPG---CLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSI 77 (153)
Q Consensus 1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~i 77 (153)
+|++||++.++.++|+++|..+|.... ...++..++++.++.+++++++|++|||+|+|+|++|+||++||+|+|++
T Consensus 37 ~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~i 116 (314)
T PRK12878 37 ARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWHLFLFFVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQV 116 (314)
T ss_pred HccccchhhHHHHHHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCc
Confidence 377899999999999999999986531 14566678889999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCCC
Q psy1910 78 STTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVNE 153 (153)
Q Consensus 78 s~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~~ 153 (153)
|++|++.++.++.++|+.+++..|+.++.+++.+++..+.||+.||+++++++++|+.+++++++||++++|++++
T Consensus 117 s~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~~Gl~~~~~~l~g~~a~~g~~~~ 192 (314)
T PRK12878 117 SRKQAKVFMVLQALVGLAVLLQFNWFAIALGIASLAIVAAYPFMKRITWWPQFFLGLAFSWGALMGWAAHFGSLSL 192 (314)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHhCCCch
Confidence 9999999999999999999988899999999999888999999999999999999999999999999999999863
No 5
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=1.7e-34 Score=233.19 Aligned_cols=151 Identities=36% Similarity=0.600 Sum_probs=140.5
Q ss_pred CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT 80 (153)
Q Consensus 1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~ 80 (153)
+|++||+..++.++|+++|..+|.. +.+++..+++.+++.+++++++|++|||+|+|+|++|+||++||+|||++|++
T Consensus 16 ~R~~kp~~~~l~~~~~~~g~~lA~~--~~~~~~~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~ 93 (290)
T PRK12870 16 LRWDKPAGRLILMIPALWAVFLAAH--GLPPLPLVGIIILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVK 93 (290)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHH
Confidence 4788999999999999999999854 24677778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCCC
Q psy1910 81 DAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVNE 153 (153)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~~ 153 (153)
||+.++.++.++++.+++.+|+.++.+++.+.++.+.||+.||++.++|+++|+.+++++++||.+++|++++
T Consensus 94 ~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~lg~~~~~~~l~g~~a~~g~~~~ 166 (290)
T PRK12870 94 VGIVIAIVALLCAAGLAFFLNPLSFWLCVAAVPVIFLYPLAKRVFPVPQLVLAIAWGFAVLISWSAVTGHLDL 166 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhccccceeeehHHHHhHHHHHHHHHcCCCCH
Confidence 9999999999999999999999999999998888999999999999999999999999999999999998763
No 6
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4.7e-34 Score=230.00 Aligned_cols=149 Identities=24% Similarity=0.238 Sum_probs=134.5
Q ss_pred ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHH
Q psy1910 2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTD 81 (153)
Q Consensus 2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~ 81 (153)
|+.||+.+.+...-.++|..+|.. +.+++..+++.+++.+++++++|++||++|+|+|++|+||++||+|||++|++|
T Consensus 8 el~k~~~t~~al~~a~~g~~lA~~--~~~~~~~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~ 85 (286)
T PRK12895 8 DYIKLEHTVFDLPFILAGYVIAAG--HYIHPIKILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMRE 85 (286)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHH
Confidence 689999998888888888888753 235666677778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910 82 AIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152 (153)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~ 152 (153)
|+.++..+.++++.+++++|+.++.++.........|+++||+++++|+++|+..++++++||.+++|+++
T Consensus 86 A~~~~~~~~~~~~~~~~~ln~l~~~l~~~~~~l~~~yp~~KR~t~~~~~~lG~~~g~~~l~g~~Av~g~~~ 156 (286)
T PRK12895 86 AIAFTIIFIAIFEICTFLLNRLVFILSPIVIFLFIIDPFLKRYTAWRHIYMGSIIGLGVLAGYLAVIPAFP 156 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHhHHHHHHHHHcCCCC
Confidence 99999999999999999999999888888776777788899999999999999999999999999999875
No 7
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=1.4e-33 Score=227.15 Aligned_cols=151 Identities=47% Similarity=0.802 Sum_probs=140.2
Q ss_pred CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT 80 (153)
Q Consensus 1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~ 80 (153)
+|++||...++..+|+++|..++... ..+++...++++++.+++++++|++|||+|+|+|++|+||++||+|||++|++
T Consensus 14 ~R~~kp~~~~l~~~~~~~g~~la~~~-~~~~~~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~ 92 (285)
T PRK12847 14 MRLHKPIGILLVFFPTLFGLLLASHS-LLPDISLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVK 92 (285)
T ss_pred HCcchHHHHHHHHHHHHHHHHHHhCc-cCCcHHHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHH
Confidence 57889999999999999999998643 23678788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910 81 DAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152 (153)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~ 152 (153)
||+.++..+.++++.+++..|+.++.+++.+.+..+.||+.||+++++++++|+.+++++++||.+++|+++
T Consensus 93 ~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~~~Kr~~~~~~~~~g~~~~~~~l~~~~a~~g~~~ 164 (285)
T PRK12847 93 QALILLFILLLIALVILLLLNKTTIYLSFIAVILIVLYPLMKRFFYWPQLFLGFTFNMGILMAFAAVQNQLD 164 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 999999999999999998899999999999988899999999999999999999999999999999999876
No 8
>PLN02776 prenyltransferase
Probab=100.00 E-value=2e-33 Score=230.35 Aligned_cols=149 Identities=25% Similarity=0.323 Sum_probs=134.3
Q ss_pred cccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHH
Q psy1910 3 LDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDA 82 (153)
Q Consensus 3 l~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a 82 (153)
++||+...+.+++.+.|..+|.. +.+++..+++..++++++++++|++||++|+|+|++|+||++||+|+|++|++||
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~--~~~~~~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A 78 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSG--EAIDLPGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHA 78 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHH
Confidence 68999999999999999998853 2467878888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCCC
Q psy1910 83 IIFLAGQLGAGLLI-LVQLNLYTIILGSTSL-LFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVNE 153 (153)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~-~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~~ 153 (153)
+.++..+..+|+.+ ++..|+.+..+++.++ ++...||++||+++++++++++.+++|+++||.|++|++|+
T Consensus 79 ~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~lKR~t~~~~~lG~~~Ga~ppL~Gw~Avtg~~~~ 151 (341)
T PLN02776 79 VAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTPLKQIHPANTWVGAVVGAIPPLMGWAAASGQLDA 151 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHccCCchhHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 99999999999955 4668999999988875 45789999999999998777777889999999999999874
No 9
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2e-33 Score=227.06 Aligned_cols=151 Identities=26% Similarity=0.265 Sum_probs=136.6
Q ss_pred CccccchHHHHHHHHHHHHHHHhcc----CCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910 1 MRLDKPIGSWLLFWPCGWSISMAAV----PGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS 76 (153)
Q Consensus 1 ~rl~rP~~~~~~~~p~~~g~~~a~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~ 76 (153)
+|++||+...+.....+.|..++.. .+ .+++..+++++++.+++++++|++|||+|+|+|++|+||++||+|||+
T Consensus 12 ~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~-~~~~~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~sG~ 90 (291)
T PRK12874 12 SELVVFKHSIFSLPFIFIAMIVASKQKNDTG-WFGFKLLILGILAAVSARNFAMAFNRLVDRDIDKDNPRTANRPSVDGR 90 (291)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHhhhhccCC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCC
Confidence 3789999998888878888777641 22 467888899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910 77 ISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152 (153)
Q Consensus 77 is~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~ 152 (153)
+|++||+.++..+.++++.+++.+|+.+..+++....+...||++||+++++|+++|+.+++++++||.+++|+++
T Consensus 91 is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~~g~~~~~~~l~G~~av~g~~~ 166 (291)
T PRK12874 91 ISVKSMVLFIVLNALIFIGVSYFINPLAFKLSFPFLIVLGGYSYFKRFSSLAHLVLGLSLGLAPIAGVVAVLGEIP 166 (291)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999888888899998888877777889999999999999999999999999999999999876
No 10
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=2.9e-33 Score=225.07 Aligned_cols=150 Identities=45% Similarity=0.799 Sum_probs=137.8
Q ss_pred CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT 80 (153)
Q Consensus 1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~ 80 (153)
+|++||....+.++|+++|..++.. +.+++..+++.+++.++.++++|++|||+|+|+|++|+||++||+|||++|++
T Consensus 12 ~R~~kp~~~~l~~~p~~~g~~la~~--~~~~~~~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~ 89 (282)
T PRK12848 12 MRLDKPIGTLLLLWPTLWALWLAAD--GIPDLWVLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEK 89 (282)
T ss_pred HCccchHHHHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHH
Confidence 4777899999999999999988853 23567777888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910 81 DAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152 (153)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~ 152 (153)
||+.++..+..+++.+++..|+.+..+++.+.+..+.|++.||++.++++++|+.+++++++||.+++|+++
T Consensus 90 ~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y~~~Kr~~~~~~~~~g~~~g~~~~~g~~a~~~~~~ 161 (282)
T PRK12848 90 EALALFVVLVLVAFLLVLTLNTLTIWLSVAALALAWIYPFMKRYTHLPQVVLGAAFGWGIPMAFAAVQGSVP 161 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999899999999988888889999999999999999999999999999999999875
No 11
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=4.3e-33 Score=223.83 Aligned_cols=150 Identities=24% Similarity=0.304 Sum_probs=134.7
Q ss_pred CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT 80 (153)
Q Consensus 1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~ 80 (153)
+|++||++.++..+|.++|..++.. +.+++..+++.+++.++.++++|++|||+|+|+|++|+||++||+|+|++|++
T Consensus 6 ~~l~rp~~~~~~~~~~~~g~~la~~--~~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~ 83 (279)
T PRK12869 6 LKLLKPRVIWLLDLAAVAGYFLAAK--HGVSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRK 83 (279)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHH
Confidence 3789999999999999999998853 24677778888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHhhccc-CccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910 81 DAIIFLAGQLGAGLLILVQ-LNLYTI-ILGSTSLLFVTLYPL-MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152 (153)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~-~~~~~~-~i~~~~~~~~~~Ys~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~ 152 (153)
||+.++..+.++++.++++ .|+.+. .+++....+.+.||. +||+++++++++|+.+++++++||++++|+++
T Consensus 84 ~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~~ 158 (279)
T PRK12869 84 EALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTIWLKPRTWLNIVIGGFAGNAAALAGYASGTGSLD 158 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccCChHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999887 888764 344445578899997 99999999999999999999999999999876
No 12
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=3.8e-33 Score=226.74 Aligned_cols=149 Identities=26% Similarity=0.365 Sum_probs=133.8
Q ss_pred ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHH
Q psy1910 2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTD 81 (153)
Q Consensus 2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~ 81 (153)
+++||+++.+..+|+..|..++.. + .+++...++++++.++.++++|++|||+|+|+|++|+||++||+|||++|++|
T Consensus 18 ~L~RP~~~~~~~~~~~~G~~la~~-~-~~~~~~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~ 95 (306)
T PRK13362 18 QVTKPGIIFGNVISVAGGFFLASK-G-HVDPVLMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGE 95 (306)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcc-C-CCCHHHHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHH
Confidence 689999999999999999999843 2 36777777888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHhhccc-CccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910 82 AIIFLAGQLGAGLLILV-QLNLYTIILGSTSL-LFVTLYPL-MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152 (153)
Q Consensus 82 a~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~-~~~~~Ys~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~ 152 (153)
|+.++..+..+|+.++. ..|+.+..++.++. .+.+.||+ +||+++++++++|+.+++|+++||.+++|+++
T Consensus 96 A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~~lKr~t~~~~~vgg~~ga~p~l~G~~a~~g~~~ 169 (306)
T PRK13362 96 ALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSLYLKRNSVYGTLVGSLSGAMPPVVGYCAVTGQFD 169 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhccCcHhHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 99999999999998664 56888777777665 46889995 99999999999999999999999999999876
No 13
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4e-33 Score=225.28 Aligned_cols=149 Identities=28% Similarity=0.341 Sum_probs=134.6
Q ss_pred ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHH
Q psy1910 2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTD 81 (153)
Q Consensus 2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~ 81 (153)
|++||+...+...+..+|..+|.. +.+++..+++..++.++.++++|++|||+|+|+|++|+||++||+|+|++|++|
T Consensus 13 ~L~r~~~~~~~~~~~~~g~~lA~~--~~~~~~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~is~~~ 90 (291)
T PRK12886 13 EMIKFSHTLFALPFAGIGAVLAAL--GLPGASQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLISKGS 90 (291)
T ss_pred HHhCccchHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCCcCHHH
Confidence 689999999988889999888753 246677788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910 82 AIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152 (153)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~ 152 (153)
|+.+...+.+.+..+++..|+.+..+++.+......||++||++.++++++|+++++++++||++++|+++
T Consensus 91 A~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~Y~~~Kr~t~~~~~~~g~~~~~~~l~g~~a~~g~~~ 161 (291)
T PRK12886 91 AILFIVLSSLLMLFAAWFLNPLCLYLSPPALFFLLLYSYCKRFTALAHVVLGFCLALAPLGAWIAIRGTIE 161 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 99998777777776777899999888888887789999999999999999999999999999999999876
No 14
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-34 Score=230.25 Aligned_cols=150 Identities=31% Similarity=0.387 Sum_probs=140.6
Q ss_pred ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHH
Q psy1910 2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTD 81 (153)
Q Consensus 2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~ 81 (153)
+++||+...+..++.+.|..+|.. ...++..++...+|..+..++++++|+|+|+|+|++|+||++||+|+|+++|+|
T Consensus 23 ~LtKPrvi~L~~it~~~g~~lA~~--~~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~ 100 (304)
T COG0109 23 QLTKPRVISLLLITAFAGMLLAPR--GSINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLISPRE 100 (304)
T ss_pred HHhCCeeeehHHHHHHHHHHHccc--ccccHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCCCccCHHH
Confidence 689999999999999999999974 246788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHhhccc-CccccchhhHHHHhhhhHHHHHHHHHhcCCCCC
Q psy1910 82 AIIFLAGQLGAGLLIL-VQLNLYTIILGSTSL-LFVTLYPL-MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVNE 153 (153)
Q Consensus 82 a~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~-~~~~~Ys~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~~ 153 (153)
++.++.++.++|+.++ +..|+.+.++++.++ .+.++||. +||+++++.+++|+.+++||++||.|++|++++
T Consensus 101 al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~lKR~T~~NiviGg~aGa~PpliGwaAvtg~~~~ 175 (304)
T COG0109 101 ALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIVIGGFAGAMPPLIGWAAVTGSISL 175 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcccceeeeeccccccccceeeeeeCCCCc
Confidence 9999999999999998 778999999999885 78999995 999999999999999999999999999999874
No 15
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=100.00 E-value=1.3e-32 Score=220.96 Aligned_cols=151 Identities=30% Similarity=0.387 Sum_probs=136.6
Q ss_pred CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT 80 (153)
Q Consensus 1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~ 80 (153)
+|++||+++++..+|+..|..++... ..+++..+++++++.++.++++|++|||+|+|+|++|+||++||+|||++|++
T Consensus 4 ~~l~rp~~~~~~~~~~~~g~~la~~~-~~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~ 82 (280)
T TIGR01473 4 LQLTKPRIISLLLITAFAGMWLAPGG-ALVNPPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPR 82 (280)
T ss_pred HHHccHHHHHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHH
Confidence 47899999999999999999998542 12678888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHhhcc-cCccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910 81 DAIIFLAGQLGAGLLIL-VQLNLYTIILGSTSLL-FVTLYP-LMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152 (153)
Q Consensus 81 ~a~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~-~~~~Ys-~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~ 152 (153)
||..++..+.++|+.++ +..|+.+..++..+.+ +.+.|| .+||+++++++++|+.+++++++||++++|+++
T Consensus 83 ~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~~ 157 (280)
T TIGR01473 83 EALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVIGGFAGAVPPLIGWAAVTGSIS 157 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcChhhccCCchhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999854 5589888888888874 588999 599999999999999999999999999999876
No 16
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=1.8e-32 Score=221.89 Aligned_cols=149 Identities=34% Similarity=0.461 Sum_probs=134.6
Q ss_pred ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHH
Q psy1910 2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTD 81 (153)
Q Consensus 2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~ 81 (153)
|++||+.+++..+|+.+|..++.. + .+++..+++++++.+++++++|++|||+|+|+|++|+||++||+|+|++|++|
T Consensus 15 ~L~rp~~~~~~~~~~~~G~~la~~-~-~~~~~~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~ 92 (296)
T PRK04375 15 ALTKPRVISLNLFTALGGMLLAPP-G-VPPLLLLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPRE 92 (296)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHH
Confidence 689999999999999999999853 2 46777888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHhhccc-CccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910 82 AIIFLAGQLGAGLLILVQ-LNLYTIILGSTSL-LFVTLYPL-MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152 (153)
Q Consensus 82 a~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~-~~~~~Ys~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~ 152 (153)
|+.++..+..+++.+++. .|+.+..+++.+. .+...||+ +||+++++++++|+.+++++++||++++|+++
T Consensus 93 a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~~ 166 (296)
T PRK04375 93 ALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTLWLKRRTPQNIVIGGAAGAMPPLIGWAAVTGSLS 166 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccchhcCCccchHHHHHHHHhHHHHHHHHhCCCCC
Confidence 999999999999988755 6777777777775 36778997 99999999999999999999999999999876
No 17
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.3e-32 Score=221.61 Aligned_cols=149 Identities=28% Similarity=0.355 Sum_probs=134.7
Q ss_pred CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT 80 (153)
Q Consensus 1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~ 80 (153)
+|++||+..+....+.++|..++.. +.+++..+++..++.+++++++|++|||+|+|+|++|+||++||+|+|++|++
T Consensus 19 l~L~R~~~~~~~l~~~~~g~~la~~--~~~~~~~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~ 96 (300)
T PRK13106 19 LRFLRIEQTFFSLPMAYLGAFVAIK--GIPPISTLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKIS 96 (300)
T ss_pred HHHHccccHHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCCcCHH
Confidence 3789999998888889999888853 24678788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCC
Q psy1910 81 DAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCV 151 (153)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~ 151 (153)
||+.+...+.+.++.++...|+.+..++..+.+....||++||+++++|+++|+..++++++||++++|..
T Consensus 97 ~A~~~~~~~~~~~~~~~~~ln~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~lg~~~~~~~~~G~~a~~g~~ 167 (300)
T PRK13106 97 EAKALITAGLILFFASAYLVNRWALLLSPIVALIAMSYPYMKRYTAFANYHLASIQGLAVFSGAVAVLGLY 167 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhcCCcchHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999888888887778889999988888887778889999999999999999999999999999998854
No 18
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.4e-32 Score=220.13 Aligned_cols=150 Identities=25% Similarity=0.289 Sum_probs=130.4
Q ss_pred ccccchHHHHHHHHHHHHHHHhcc--CCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCH
Q psy1910 2 RLDKPIGSWLLFWPCGWSISMAAV--PGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSIST 79 (153)
Q Consensus 2 rl~rP~~~~~~~~p~~~g~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~ 79 (153)
|+.||+..++. .|.....++.+. .++.+++..+++..++++++++++|++|||+|+|+|++|+||++||+|+|++|+
T Consensus 7 ~l~r~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~ 85 (284)
T PRK12888 7 RLVAIEHSVFA-LPFAYIAALTAMFASDGSVHWADLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSV 85 (284)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCH
Confidence 67889888554 444444333321 123478888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910 80 TDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152 (153)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~ 152 (153)
+||+.++..+.++++.++...|+.++.++..+.+....|++.||+++++|+++|+++++++++||++++|+++
T Consensus 86 ~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~~~~~~~~~Y~~~Kr~t~~~~~~lg~~~~~~~l~g~~a~~g~~~ 158 (284)
T PRK12888 86 RTAWTGALVALAVFLGAAALLNPLCLALAPLAVAPLVVYPYAKRFTNFPHAILGLAQAVGPVGAWIAVTGTWS 158 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999988888888899999888888887788999999999999999999999999999999999876
No 19
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=4.6e-32 Score=217.99 Aligned_cols=150 Identities=34% Similarity=0.424 Sum_probs=135.4
Q ss_pred CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT 80 (153)
Q Consensus 1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~ 80 (153)
+|++||+...+......+|..++.. + .+++..+++.+++.+++++++|++|||+|+|+|++|+||++||+|+|++|++
T Consensus 6 ~~L~r~~~~~~~~~~~~~g~~la~~-~-~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~ 83 (282)
T TIGR01475 6 LELIKFEHTVFALPFAYAGALLAAK-G-LPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKK 83 (282)
T ss_pred HHHHccccHHHHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHH
Confidence 3789999998886666667777643 2 4678888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910 81 DAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152 (153)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~ 152 (153)
||+.++..+.+.++.++...|+.+..++..+.+..+.|+++||+++++++++|+.+++++++||.+++|+++
T Consensus 84 ~a~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y~~~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~~~ 155 (282)
T TIGR01475 84 EARTMIILSLALFLSASYFLNPLAFILSPLVLLVLIIYPYTKRFTFLCHYVLGSTYGLAPLAGWVAVIGTIS 155 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHhccccccHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 999999999888888888899998888888887789999999999999999999999999999999999876
No 20
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.98 E-value=9.1e-32 Score=216.91 Aligned_cols=150 Identities=39% Similarity=0.591 Sum_probs=140.1
Q ss_pred CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT 80 (153)
Q Consensus 1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~ 80 (153)
+|++||.++.+...|.++|..++.+ +.+++...++.+++++++++++|++||++|+|+|++|+||++||+|||++|++
T Consensus 17 ~r~~r~i~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~ 94 (289)
T COG0382 17 LRLDRPIFNLLLLLPALLGLLLAAS--GLPSLKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVK 94 (289)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHH
Confidence 5889999999999999999999873 34557788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910 81 DAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152 (153)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~ 152 (153)
||+.+..++.++++.+++.+|+.++.+++.+.++.+.|+++||.++++|+.+|..+++++++|+.+++|+++
T Consensus 95 ~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~l~~~Y~~~Kr~~~~~~~~lg~~~~~~~~~g~~a~~~~~~ 166 (289)
T COG0382 95 EALLLAILLLLLGLALALLLNPLAFLLSLAALVLALAYPFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLP 166 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999999999999997799999999999999999999999999998654
No 21
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.98 E-value=2.2e-31 Score=215.22 Aligned_cols=141 Identities=26% Similarity=0.244 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHH-hcc----CCC---CCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHH
Q psy1910 10 WLLFWPCGWSISM-AAV----PGC---LPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTD 81 (153)
Q Consensus 10 ~~~~~p~~~g~~~-a~~----~~~---~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~ 81 (153)
.++.+|....+++ |.. .++ .|+|..+++..++++++++++|++|||+|+|+|++|+||++||+|+|++|++|
T Consensus 16 t~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~is~~~ 95 (300)
T PRK12876 16 ALFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLLSINF 95 (300)
T ss_pred HHHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCCCCHHH
Confidence 4667787766544 431 133 57899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCC
Q psy1910 82 AIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGC 150 (153)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~ 150 (153)
|+.++..+.+++..++..+|+.++.++..+.+...+||++||+++++|+++|+.+++++++||.+++|+
T Consensus 96 A~~~~~~~~~~~~~l~~~ln~l~~~l~~~~~~~~~iY~~~KR~t~~~~~vLGl~~~~~~l~~~~Av~~~ 164 (300)
T PRK12876 96 SMLLLTLCSFLFLSLCWLLNPLCFSLAVLSTLLMIIYPYTKRVTFLCHWILGLVYYLAILMNFFAIIET 164 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999888888888889999999999999888899999999999999999999999999999998887
No 22
>KOG1381|consensus
Probab=99.96 E-value=1.7e-31 Score=210.41 Aligned_cols=153 Identities=64% Similarity=1.146 Sum_probs=146.0
Q ss_pred CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT 80 (153)
Q Consensus 1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~ 80 (153)
||+.||..+++..+|+.|+.++++..+..++...+.+.-.+.+++++++|+|||..|+|+|++++|++.||+.||++|++
T Consensus 71 mRldkPiGTwLLywPCtWSIamaAdag~~p~~~mL~LFG~GAllMRgAGCtINDlwDkdlD~KVeRtklRPlAsG~ls~~ 150 (353)
T KOG1381|consen 71 MRLDKPIGTWLLYWPCTWSIAMAADAGLLPSIKMLALFGVGALLMRGAGCTINDLWDKDLDAKVERTKLRPLASGSLSPR 150 (353)
T ss_pred HhcCCCceeeeeecchHHHHHhccCCCccchhHHHHHhcccHHHhccCCceehhhhhhhhhhhHhhhcccccccCCcchh
Confidence 79999999999999999999999987777777777888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCCC
Q psy1910 81 DAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVNE 153 (153)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~~ 153 (153)
+|+.+-..+..+|+.+...+|+.+..++..+....+.|+.+||.++++++++|+.+.++.+.||-|+.|+.+|
T Consensus 151 qaI~fL~~ql~~gLgiLlqLn~ysi~lg~~sl~~v~~ypl~kr~TY~pq~vLgltfnwGAllGw~A~~g~~~~ 223 (353)
T KOG1381|consen 151 QAIGFLGAQLSLGLGILLQLNWYSIALGASSLALVITYPLMKRFTYWPQLVLGLTFNWGALLGWCALKGSLSP 223 (353)
T ss_pred HHHHHHHHHHHHhHHHHHhccHHHHHhcccccccEEEeehhhhcchhHHHHHhhhcchhhhhcchhhcCccCh
Confidence 9999999999999999999999999999998888999999999999999999999999999999999999876
No 23
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.96 E-value=9.5e-29 Score=198.45 Aligned_cols=144 Identities=23% Similarity=0.312 Sum_probs=131.8
Q ss_pred ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHH
Q psy1910 2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTD 81 (153)
Q Consensus 2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~ 81 (153)
|++||+++....+|.++|..++.. ..+++..+++.++++++.++++|++|||+|+|+|++|+ ++||+|||++|++|
T Consensus 8 ~l~Rp~~~~~~~~~~~~g~~la~~--~~~~~~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~--~~Rpl~sG~is~~~ 83 (279)
T PRK09573 8 ELIRPKNCIGASIGAIIGYLIASN--FKIDLKGIILAALVVFLVCAGGNVINDIYDIEIDKINK--PERPIPSGRISLKE 83 (279)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHcc--CCcchHHHHHHHHHHHHHHHHHHHHHhhcccccccccC--CCCCcCCCccCHHH
Confidence 689999999999999999888853 23577788889999999999999999999999999986 59999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CccccchhhHHHHhhhhHHHHHHHHHhcC
Q psy1910 82 AIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL-MKRVTHWAQLTLGMTFNYGALMGYSAVTG 149 (153)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g 149 (153)
|+.++..+.++++.+++..|+.++.+++.+....+.||. +||+++++|++.|...+..++.|+.++++
T Consensus 84 a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Ys~~lKr~~~~~~~~vg~~~G~~~~~g~~~~~~ 152 (279)
T PRK09573 84 AKIFSITLFIVGLILSIFINIYAFLIALLNSILLYLYAKDLKKTGLIGNLIVAYLTGLSFIFGGLAVFN 152 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999878899995 99999999999999988889999988876
No 24
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.96 E-value=7.8e-29 Score=200.42 Aligned_cols=151 Identities=18% Similarity=0.125 Sum_probs=126.2
Q ss_pred CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT 80 (153)
Q Consensus 1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~ 80 (153)
+|++||++|....+ .+.+...+.......++...++++++.++.++++|++||++|+|+|++|+||++||++||++|++
T Consensus 15 l~L~RP~~w~~nll-~~~~~~~a~~~~~~~~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~ 93 (295)
T PRK12324 15 LKLLRPKQWIKNLF-VFAAPIFAGNLLNPGALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVS 93 (295)
T ss_pred HHHhCchHHHHHHH-HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHH
Confidence 37899999976555 33333444322112235566777888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910 81 DAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL-MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152 (153)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~ 152 (153)
+|+.++.++.++|+.+++..|+.+..+.+...++.++||. +||++.++++..+++++++++.|..+.+...+
T Consensus 94 ~A~~~~~~l~~~~l~la~~l~~~~~~~~~~~~~~~~~Ys~~lK~~~~~d~l~va~~~~lr~~~G~~a~~~~~s 166 (295)
T PRK12324 94 LAYILAVVLLVASLALAYLLSPKLALVLLVYLVLNLAYSFKLKHQPVLDVFCIASGFVLRAIAGGVAIGVPLS 166 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchhhHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999998999887777777788899997 99999999999999999999999998876654
No 25
>PRK08238 hypothetical protein; Validated
Probab=99.95 E-value=1.1e-27 Score=204.80 Aligned_cols=146 Identities=21% Similarity=0.169 Sum_probs=123.1
Q ss_pred ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHH
Q psy1910 2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTD 81 (153)
Q Consensus 2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~ 81 (153)
|++||++|....+- +++...+........+...++++++++++++++|++||++|+|+|++|+||++||++||++|+++
T Consensus 196 ~l~Rp~q~~kn~l~-~~p~l~a~~~~~~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~ 274 (479)
T PRK08238 196 KALRVHQWAKNLLV-FVPLLAAHQFGDLQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPF 274 (479)
T ss_pred HHhCCcHHHHHHHH-HHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHH
Confidence 68899999555543 23444442211112355678888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CccccchhhHHHHhhhhHHHHHHHHHhc
Q psy1910 82 AIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL-MKRVTHWAQLTLGMTFNYGALMGYSAVT 148 (153)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~ 148 (153)
|+.++.++..+|+.+++.+|+.++.+.+...++..+||+ +||+++++++++|+++++++++|+.+.+
T Consensus 275 A~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ys~~lKr~~~~~~~~la~~~~lr~~~G~~a~~ 342 (479)
T PRK08238 275 GLAAAPLLLLAGLALALALGPAFLLVLLAYLALTLAYSLRLKRKVLVDVLTLAALYTLRIIAGAAAIG 342 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHhcCCccccchHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999777777777788999997 9999999999999999999999998865
No 26
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=5.3e-27 Score=188.03 Aligned_cols=145 Identities=20% Similarity=0.202 Sum_probs=130.2
Q ss_pred CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT 80 (153)
Q Consensus 1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~ 80 (153)
+|++||+.+....++..+|..++.. . .++..+++.+++.++.++++|++|||+|+|+|++| |+ +||+++|++|++
T Consensus 8 ~~l~R~~~~~~~~~~~~~g~~la~~--~-~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~-~Rpl~~G~is~~ 82 (279)
T PRK12884 8 LELLRPEHGLMAGIAVVLGAIIALG--G-LPLDEALLGFLTAFFASGSANALNDYFDYEVDRIN-RP-DRPIPSGRISRR 82 (279)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHCC--C-CchHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhcc-CC-CCCCCCCCCCHH
Confidence 3689999999999999999988853 2 22456778889999999999999999999999998 75 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CccccchhhHHHHhhhhHHHHHHHHHhcCC
Q psy1910 81 DAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL-MKRVTHWAQLTLGMTFNYGALMGYSAVTGC 150 (153)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~ 150 (153)
|++.++.++.++++.++..+|+..+.+++.+..+.+.||. +||+++++++..|+..+++++.|+.++++.
T Consensus 83 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ys~~lK~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 153 (279)
T PRK12884 83 EALLLAILLFILGLIAAYLISPLAFLVVILVSVLGILYNWKLKEYGLIGNLYVAFLTGMTFIFGGIAVGEL 153 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999998999988888888888999997 899999999999999999999999887764
No 27
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.94 E-value=3.5e-26 Score=183.30 Aligned_cols=143 Identities=23% Similarity=0.291 Sum_probs=124.6
Q ss_pred ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHH
Q psy1910 2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTD 81 (153)
Q Consensus 2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~ 81 (153)
|++||+++.+..+|..+|..++.. ..+++...++.+++.++.++++|++|||+|+|+|++| | ++||+|+|++|++|
T Consensus 9 ~l~Rp~~~~~~~~~~~~g~~~a~~--~~~~~~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~-~-~~Rpl~~G~is~~~ 84 (276)
T PRK12882 9 ELTRPVNAVVAGVAAFIGAFIAGG--ILSSPSLTGLAFAAVFLATGAGNAINDYFDREIDRIN-R-PDRPIPSGAVSPRG 84 (276)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-C-CCCCcCCCCcCHHH
Confidence 689999999999999999999853 2233445678888999999999999999999999985 4 59999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CccccchhhHHHHhhhhHHHHHHHHHhc
Q psy1910 82 AIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL-MKRVTHWAQLTLGMTFNYGALMGYSAVT 148 (153)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~ 148 (153)
++.++..+.++++.+++.+|+.++.++..+....+.|+. +||++.++++..|...+..++.|+.+.+
T Consensus 85 a~~~~~~l~~~g~~~~~~l~~~~~~~~~~~~~~~~~Yt~~lK~~~~~g~~~vg~~~g~~~~~g~~~~~ 152 (276)
T PRK12882 85 ALAFSILLFAAGVALAFLLPPLCLAIALFNSLLLVLYAETLKGTPGLGNASVAYLTGSTFLFGGAAVG 152 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999988878889995 9999989888888766666777876655
No 28
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.94 E-value=1.5e-25 Score=179.70 Aligned_cols=145 Identities=23% Similarity=0.315 Sum_probs=125.4
Q ss_pred ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHH
Q psy1910 2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTD 81 (153)
Q Consensus 2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~ 81 (153)
+++||+.+.+..++.+.|..++.. +.+++...++.+++.++.++++|++|||+|+|+|+.| | ++||+|+|++|++|
T Consensus 8 ~l~Rp~~~~~~~~~~~~G~~la~~--~~~~~~~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n-~-~~Rpl~sG~is~~~ 83 (277)
T PRK12883 8 EITRPHNCILAGIVGILGSLVALG--GIPPIKTLILIFLVVYLGCSGGNTINDYFDYEIDKIN-R-PNRPLPRGAMSRKA 83 (277)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHHHHHHHHhHHHhhhhHhccccC-C-CCCCCCCCccCHHH
Confidence 689999999999999999888743 2345666677788888999999999999999999984 5 59999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CccccchhhHHHHhhhhHHHHHHHHHhcCCC
Q psy1910 82 AIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL-MKRVTHWAQLTLGMTFNYGALMGYSAVTGCV 151 (153)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~ 151 (153)
++.++..+.++|+.+++..|+.++.+++.+..+.+.|++ +||++.+++...|...+..++.|++++ +++
T Consensus 84 a~~~~~~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~Y~~~~k~~~~lg~~~vg~~~g~~~~~g~~a~-~~~ 153 (277)
T PRK12883 84 ALYYSLLLFAVGLALAYLINIEAFLFALGAYVLMFLYAWKLKPLPFIGNVVVALLTGATPIYGAIAV-GRI 153 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHHHHHh-ccc
Confidence 999999999999999999999998888888888999997 999988889988887776678888776 544
No 29
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.93 E-value=1.2e-24 Score=175.06 Aligned_cols=145 Identities=19% Similarity=0.332 Sum_probs=120.0
Q ss_pred CccccchHHHHHHHHHHHHHHHhccCCCC-CcHHHHHH-HHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCC
Q psy1910 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCL-PDLHTLAL-FGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSIS 78 (153)
Q Consensus 1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~-~~~~~~~l-~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is 78 (153)
++++||+++....+|.+.|.+++...... .+|...++ ++++..+.++++|++|||+|+|+|++|+ ++||+++|++|
T Consensus 4 ~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~--~~Rpi~~G~is 81 (283)
T TIGR01476 4 IELMKPVTWIPPIWACFCGALASGYERGFPEHWWLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINE--PQRPIPSGIIS 81 (283)
T ss_pred eEecCCceehhHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCC--CCCCCCCCCcC
Confidence 47899999999999999999887432222 34654444 6778899999999999999999999976 48999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccc----CccccchhhHHHHhhh-hHHHHHHHHHh
Q psy1910 79 TTDAIIFLAGQLGAGLLILVQLNLYT-IILGSTSLLFVTLYPL----MKRVTHWAQLTLGMTF-NYGALMGYSAV 147 (153)
Q Consensus 79 ~~~a~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~Ys~----~Kr~~~~~~~~~g~~~-~~~~l~g~~a~ 147 (153)
++|++.++.++..+++.+++.++... ..+++.+.+..+.||. +||+++++++..|++. ..++..|+.+.
T Consensus 82 ~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~ 156 (283)
T TIGR01476 82 LREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIF 156 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988776554 6777778778999983 9999999999999874 56666666554
No 30
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.93 E-value=9.8e-25 Score=178.07 Aligned_cols=142 Identities=20% Similarity=0.298 Sum_probs=121.3
Q ss_pred ccccchHHHHHHHHHHHHHHHhccCCCCCcHHH------HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccC
Q psy1910 2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHT------LALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNG 75 (153)
Q Consensus 2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG 75 (153)
+++||+++...++|...|...+.. .++.. ++..+++..+.++++|++|||+|+|+|++|+ ++||+++|
T Consensus 32 ~l~RP~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~--~~Rpl~sG 105 (314)
T PRK07566 32 QLMKPITWFPPMWAFLCGAVSSGA----FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINE--PYRPIPSG 105 (314)
T ss_pred HHhCCcchHHHHHHHHHHHHHcCC----CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCC--CCCCCCCc
Confidence 678999999999998888776532 23322 3446677888999999999999999999976 48999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----cCccccchhhHHHHhhh-hHHHHHHHHHhcC
Q psy1910 76 SISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYP----LMKRVTHWAQLTLGMTF-NYGALMGYSAVTG 149 (153)
Q Consensus 76 ~is~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys----~~Kr~~~~~~~~~g~~~-~~~~l~g~~a~~g 149 (153)
++|++|++.++..+.++++.+++.+|+....+++.+.+..+.|| .+||+++++++++|+.. +++++.|+.+.++
T Consensus 106 ~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~~~~ 184 (314)
T PRK07566 106 AISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEGLPWWAGAAAFGA 184 (314)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999899998899988888899999 39999999999999875 7788899888774
No 31
>KOG1380|consensus
Probab=99.92 E-value=3.2e-27 Score=189.94 Aligned_cols=150 Identities=25% Similarity=0.372 Sum_probs=139.4
Q ss_pred CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT 80 (153)
Q Consensus 1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~ 80 (153)
++|.||+...+++...+-|++++.. ..++..++...+|..+..+++|++||++|.+.|++|+||++||+|+|+|||.
T Consensus 98 ~eLsK~rLT~LVV~tt~~gYalap~---p~s~~~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rplv~g~isp~ 174 (409)
T KOG1380|consen 98 LELSKPRLTMLVVLTTMTGYALAPG---PFSFPTLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRPLVRGRISPL 174 (409)
T ss_pred HHhcccceEEEEeeecccccccccc---CCCcchhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccccccCccChH
Confidence 3789999999999999999999974 3677888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCCC
Q psy1910 81 DAIIFLAGQLGAGLLILVQ-LNLYTIILGSTSL-LFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVNE 153 (153)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~-~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~~ 153 (153)
+|+.++.+....|+.+.++ .|+....+|...+ ++..+|+.+||..+.+.+++++.+++||++||.+++|.+||
T Consensus 175 hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTPlKrihiinTWvGavVGAIPPLMGwAAasg~l~~ 249 (409)
T KOG1380|consen 175 HAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTPLKRIHIINTWVGAVVGAIPPLMGWAAASGLLDP 249 (409)
T ss_pred HHHHHHHHhccccceeeeecccHHHHHHhhcchheeeccccchhhhhhhhhHHHHHhccCCccchhhhhccCCCc
Confidence 9999999999999987765 8999989888875 78899999999999999999999999999999999999986
No 32
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.92 E-value=3.9e-24 Score=172.56 Aligned_cols=150 Identities=22% Similarity=0.165 Sum_probs=125.2
Q ss_pred ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccc--cccccCCCCCCCccccCCCCH
Q psy1910 2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDK--DIDSKVSRTKDRPLVNGSIST 79 (153)
Q Consensus 2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~--~~D~~~~r~~~RPl~sG~is~ 79 (153)
++.||+++....+|+..|..++...+ .+++..+++++++.++.++++|.+|||+|+ |+|++++|+++||+++|++|+
T Consensus 8 ~~~Rp~~~~~~~~p~l~G~~~a~~~~-~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~is~ 86 (293)
T PRK06080 8 ELARPKTLPAAFAPVLVGTALAYWLG-SFHPLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGISP 86 (293)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcC-CccHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCCCH
Confidence 67999999999999999999985433 468888899999999999999999999998 689888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccc-Cc--cccchhhHHHHhhhhHHH-HHHHHHhcCCC
Q psy1910 80 TDAIIFLAGQLGAGLLILVQ----LNLYTIILGSTSLLFVTLYPL-MK--RVTHWAQLTLGMTFNYGA-LMGYSAVTGCV 151 (153)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~Ys~-~K--r~~~~~~~~~g~~~~~~~-l~g~~a~~g~~ 151 (153)
+|++.++..+.++++.++.. .++..+.+++.+.+..+.||. .| ++..++++..|+..+... ..++++++|++
T Consensus 87 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~Ys~~p~~~~~~glge~~~~~~~G~~~~~~~~~~~~~~~ 166 (293)
T PRK06080 87 KQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGLLCIAAAILYTGGPKPYGYTGLGELFVGVFFGLVIVLGTYYLQAGTV 166 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcCCCCccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999988887766544 477778888888888899995 22 245588999998776555 45588888876
Q ss_pred C
Q psy1910 152 N 152 (153)
Q Consensus 152 ~ 152 (153)
+
T Consensus 167 ~ 167 (293)
T PRK06080 167 D 167 (293)
T ss_pred C
Confidence 5
No 33
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.92 E-value=3.6e-24 Score=173.60 Aligned_cols=150 Identities=18% Similarity=0.129 Sum_probs=114.5
Q ss_pred ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccC-CC--------CCCCcc
Q psy1910 2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKV-SR--------TKDRPL 72 (153)
Q Consensus 2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~-~r--------~~~RPl 72 (153)
+++||+.+.+...|.++|.++|....+.+++...++.+++.++..+++|++|||+|+|+|++| +| |++||+
T Consensus 10 ~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl 89 (297)
T PRK12871 10 DLTRAHFLPAWPLLFCSGLVLAFANYGGFSWELTIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTRYWRPFKERPI 89 (297)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhccccCCCCCcc
Confidence 689999999999999899888842212467766654455555666778999999999999853 33 379999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcccCccccchh--hHHHHhhhhHHHHHHHHH
Q psy1910 73 VNGSISTTDAIIFLAGQLGAGLLILVQLNL----YTIILGSTSLLFVTLYPLMKRVTHWA--QLTLGMTFNYGALMGYSA 146 (153)
Q Consensus 73 ~sG~is~~~a~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~Ys~~Kr~~~~~--~~~~g~~~~~~~l~g~~a 146 (153)
++|++|++|++.++..+.++++.++...+. ..+.+++.+.+..+.|+..||.+.++ ++++++.++++++.||.
T Consensus 90 ~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~~kr~~~~p~~~l~G~~~~~~~~~~g~~- 168 (297)
T PRK12871 90 PSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQVKKRNQKYPVAQLLGRTDFTLFPAAGYL- 168 (297)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999988776554 34455566667778888767765444 55677888998888875
Q ss_pred hcCCCC
Q psy1910 147 VTGCVN 152 (153)
Q Consensus 147 ~~g~~~ 152 (153)
++|+++
T Consensus 169 ~~g~~~ 174 (297)
T PRK12871 169 CYGQPD 174 (297)
T ss_pred HhCCCc
Confidence 577765
No 34
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.91 E-value=1.1e-23 Score=171.34 Aligned_cols=146 Identities=24% Similarity=0.302 Sum_probs=117.8
Q ss_pred CccccchHHHHHHHHHHHHHHHhccCCCCCcHHH------HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCcccc
Q psy1910 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHT------LALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVN 74 (153)
Q Consensus 1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~s 74 (153)
++++||+++...++|++.|...+. + .+|.. .+..+++..+.++++|.+|||+|+|.|+.|+| +||+++
T Consensus 20 ~~l~RP~~~~~~~~~~~~G~~~~~---~-~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~--~Rpi~~ 93 (306)
T TIGR02056 20 LQLMKPITWIPLIWGVVCGAAASG---N-FHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEP--YRPIPS 93 (306)
T ss_pred HHHcChHhhHHHHHHHHHHHHHcC---C-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCC--CCCCCC
Confidence 368999999999999999988542 2 33332 34556777899999999999999999999875 899999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcc---c-CccccchhhHHHHhhhhHHHHHH
Q psy1910 75 GSISTTDAIIFLAGQLGAGLLILVQLN-------LYTIILGSTSLLFVTLYP---L-MKRVTHWAQLTLGMTFNYGALMG 143 (153)
Q Consensus 75 G~is~~~a~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~Ys---~-~Kr~~~~~~~~~g~~~~~~~l~g 143 (153)
|++|++|++.++..+.++++.+++.+. +..+.+++.+.+..+.|| + +||+++++++..|...+..+..+
T Consensus 94 G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg~~~~~~~~~~ 173 (306)
T TIGR02056 94 GAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALGASYIALPWWA 173 (306)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998876653 567788888888899998 3 89999999988877665444444
Q ss_pred HHHhcCCCC
Q psy1910 144 YSAVTGCVN 152 (153)
Q Consensus 144 ~~a~~g~~~ 152 (153)
..+++|+++
T Consensus 174 ~~a~~g~~~ 182 (306)
T TIGR02056 174 GHALFGELN 182 (306)
T ss_pred HHHHhCCCc
Confidence 346678765
No 35
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.91 E-value=1.1e-23 Score=175.33 Aligned_cols=145 Identities=23% Similarity=0.315 Sum_probs=116.9
Q ss_pred CccccchHHHHHHHHHHHHHHHhccCCCCCcHHH------HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCcccc
Q psy1910 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHT------LALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVN 74 (153)
Q Consensus 1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~s 74 (153)
++++||++|...++|++.|.... +. .+|.. .+..+++..+.++++|++|||+|+|+|++|+ ++||+++
T Consensus 89 l~L~RP~t~~~~~~~v~~G~~~~---g~-~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~--~~Rpi~s 162 (375)
T PLN00012 89 LQLTKPVTWPPLVWGVLCGAAAS---GN-FHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINE--PYRPIPS 162 (375)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHc---CC-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCC--CCCCcCC
Confidence 36899999999999999998843 22 34432 3667778889999999999999999999987 4899999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcc---c-CccccchhhHHHHhhh-hHHHHH
Q psy1910 75 GSISTTDAIIFLAGQLGAGLLILVQL-------NLYTIILGSTSLLFVTLYP---L-MKRVTHWAQLTLGMTF-NYGALM 142 (153)
Q Consensus 75 G~is~~~a~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~Ys---~-~Kr~~~~~~~~~g~~~-~~~~l~ 142 (153)
|++|+++++.++..+..+++.+++.+ |+..+.+++.+++..++|| + +||+++++++..|... .+|+..
T Consensus 163 G~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~~lp~~~ 242 (375)
T PLN00012 163 GAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWA 242 (375)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHHHHHHHH
Confidence 99999999998888888777776554 4566778888888899998 3 9999999998887665 555566
Q ss_pred HHHHhcCCCC
Q psy1910 143 GYSAVTGCVN 152 (153)
Q Consensus 143 g~~a~~g~~~ 152 (153)
|+ +++|+++
T Consensus 243 g~-a~~g~~s 251 (375)
T PLN00012 243 GQ-ALFGTLT 251 (375)
T ss_pred HH-HHcCCCC
Confidence 66 7788765
No 36
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.90 E-value=9.7e-23 Score=167.34 Aligned_cols=147 Identities=24% Similarity=0.303 Sum_probs=113.4
Q ss_pred ccccchHHHHHHHHHHHHHHHhccCCCCCcHHH----HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCC
Q psy1910 2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHT----LALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSI 77 (153)
Q Consensus 2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~i 77 (153)
+++||+++. .++|+.+|..+|... ..+++.. +...++...+..+++|++|||+|+|+|++|+|+ ||+++|++
T Consensus 17 ~L~kP~t~l-~~~p~~~g~~lA~g~-~~~~~~~~~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rt--Rpl~~G~i 92 (331)
T PRK12392 17 ELLDPVTWI-SVFPCLAGGVMASGA-MQPTLHDYLLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPT--RPIPSGRL 92 (331)
T ss_pred HHHCHHHHH-HHHHHHHHHHHHcCC-CCCChhHHHHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCC--CCCCcCCc
Confidence 689997776 899999999987531 1122221 222233444566788999999999999999875 99999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhcc---c-CccccchhhHHHHhhhhHHHHHHHH
Q psy1910 78 STTDAIIFLAGQLGAGLLILVQLNL--------YTIILGSTSLLFVTLYP---L-MKRVTHWAQLTLGMTFNYGALMGYS 145 (153)
Q Consensus 78 s~~~a~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~Ys---~-~Kr~~~~~~~~~g~~~~~~~l~g~~ 145 (153)
|++|++.++..+..+++.++.+++. ..+..++.+.+..++|| + +||++.+++..+|+++++.+.+++.
T Consensus 93 s~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~~~~~~~~~ 172 (331)
T PRK12392 93 SEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGFITFLSAN 172 (331)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988876543 22344556677889996 3 7998888888999999988888888
Q ss_pred HhcCCCC
Q psy1910 146 AVTGCVN 152 (153)
Q Consensus 146 a~~g~~~ 152 (153)
++.|+++
T Consensus 173 a~~g~~~ 179 (331)
T PRK12392 173 ALFSDIR 179 (331)
T ss_pred HHhcCCC
Confidence 8877764
No 37
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.90 E-value=1.8e-22 Score=163.47 Aligned_cols=150 Identities=14% Similarity=0.065 Sum_probs=123.1
Q ss_pred ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccc--cccccCCCC--CCCccccCCC
Q psy1910 2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDK--DIDSKVSRT--KDRPLVNGSI 77 (153)
Q Consensus 2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~--~~D~~~~r~--~~RPl~sG~i 77 (153)
+.+||+++.++..|+.+|.+++.+..+..+|..+++++++.+++|+++|.+|||+|+ |.|++ +|| ++||+++|++
T Consensus 9 ~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~-~rt~~~~r~l~~G~i 87 (296)
T PRK05951 9 IFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHH-ETTGYRQHPIQAGIM 87 (296)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccc-cccCCCCCccccCCc
Confidence 468999999999999999999875434578999999999999999999999999995 55555 566 6899999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhcc---cCccccchhhHHHHhhhh-HHHHHHHHHhcC
Q psy1910 78 STTDAIIFLAGQLGAGLLILVQ----LNLYTIILGSTSLLFVTLYP---LMKRVTHWAQLTLGMTFN-YGALMGYSAVTG 149 (153)
Q Consensus 78 s~~~a~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~Ys---~~Kr~~~~~~~~~g~~~~-~~~l~g~~a~~g 149 (153)
|++|++.++.++..+++.++.. .++..+.+++.+.+..+.|| +.+++..++++..++.++ ..++..++.++|
T Consensus 88 s~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~~~~~~~~~Yt~~P~~lky~glGe~~v~~~~g~~~vlg~~~~~~~ 167 (296)
T PRK05951 88 TLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWSHMLVMGLIYVWLG 167 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999988887766433 46778888888889999996 333434789999998877 555666888888
Q ss_pred CCC
Q psy1910 150 CVN 152 (153)
Q Consensus 150 ~~~ 152 (153)
+++
T Consensus 168 ~~~ 170 (296)
T PRK05951 168 NLS 170 (296)
T ss_pred ccc
Confidence 764
No 38
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.88 E-value=1.9e-22 Score=158.13 Aligned_cols=141 Identities=26% Similarity=0.327 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHH
Q psy1910 10 WLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQ 89 (153)
Q Consensus 10 ~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~ 89 (153)
.+++.|+.+|...+.. ...++.......++.++.+.++|.+|||+|+|.|+.|+|+++||+++|++|++++..++..+
T Consensus 2 ~~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~ 79 (257)
T PF01040_consen 2 PLSFLPVLAGLALASG--GPFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALIL 79 (257)
T ss_pred hHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHH
Confidence 4677888888444432 34667778888888889999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cCccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910 90 LGAGLLILVQLNLYTIILGSTSLLFVTLYP---LMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152 (153)
Q Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys---~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~ 152 (153)
..+++.+++..++..+.+.++..+..+.|+ .+||++.++++..|++++..+..|+++.+++.+
T Consensus 80 ~~l~l~l~~~~~~~~~~~~~~~~~~~~~Ys~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (257)
T PF01040_consen 80 LLLGLLLALLLGPWFLLILLLGFLLGLLYSPPLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPP 145 (257)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHhhhhhhcceeccchhhHHHhhhHhhhhhhhhcCCccc
Confidence 999999998889988888888877789999 699999999999999999999999999888653
No 39
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.87 E-value=2.7e-21 Score=158.03 Aligned_cols=150 Identities=12% Similarity=0.156 Sum_probs=125.5
Q ss_pred ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccC--CCCCCCccccCCCCH
Q psy1910 2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKV--SRTKDRPLVNGSIST 79 (153)
Q Consensus 2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~--~r~~~RPl~sG~is~ 79 (153)
++.||++..++..|+.+|.+++....+..++..+++++++.++.|+++|.+|||+|++.|+.+ .++++|++++|.+|+
T Consensus 8 ~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~ 87 (317)
T PRK13387 8 KLVEIHTKIASFFPVILGTLFSLYVAKIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKP 87 (317)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCH
Confidence 678999999999999999999865434578888999999999999999999999998755543 334589999999999
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhcc---c-CccccchhhHHHHhhhhHHHH-HHHHHhcCC
Q psy1910 80 TDAIIFLAGQLGAGLLIL----VQLNLYTIILGSTSLLFVTLYP---L-MKRVTHWAQLTLGMTFNYGAL-MGYSAVTGC 150 (153)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~Ys---~-~Kr~~~~~~~~~g~~~~~~~l-~g~~a~~g~ 150 (153)
|+++..+..+.+++++++ +..++..+.+++.+.+..+.|| + +||++ ++++..++.++...+ .+++.+++.
T Consensus 88 ~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl~g~~~~~~Yt~gP~~l~y~g-LGe~~v~i~~G~~~v~g~~yv~t~~ 166 (317)
T PRK13387 88 RNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGLICFAIGILYTGGPLPLSRMP-LGEIFSGLTMGFGIFLLAVYINTNT 166 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhhhhcCCCcccccCc-cHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999998854 5568888899999999999998 2 88876 899999988776654 457888877
Q ss_pred CC
Q psy1910 151 VN 152 (153)
Q Consensus 151 ~~ 152 (153)
++
T Consensus 167 ~~ 168 (317)
T PRK13387 167 IT 168 (317)
T ss_pred Cc
Confidence 54
No 40
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=99.87 E-value=3.5e-21 Score=156.85 Aligned_cols=139 Identities=22% Similarity=0.135 Sum_probs=112.8
Q ss_pred ccccchHHHHHHHHHHHHHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHH----HhccccccccccCCCCCCCccccCC
Q psy1910 2 RLDKPIGSWLLFWPCGWSISMAAVP-GCLPDLHTLALFGLGAVIMRGAGCT----INDLWDKDIDSKVSRTKDRPLVNGS 76 (153)
Q Consensus 2 rl~rP~~~~~~~~p~~~g~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~~~----~Nd~~D~~~D~~~~r~~~RPl~sG~ 76 (153)
|++||++.....++...+..++... +..+++. .+...++.++.+.++|+ +|||+|+|+|++|+ ++||++||+
T Consensus 18 ~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~-~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~ink--p~rPiasG~ 94 (308)
T PRK12887 18 KFSRPHTIIGTSLSVLGLYLIAIAASSNTIALA-NLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINK--PHLPLAAGE 94 (308)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhccchhhHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCC--CCCCcCCcc
Confidence 6899999999999997776665321 1122222 45566666777788888 99999999999975 499999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----CccccchhhHHHHhhhhHHHHHH
Q psy1910 77 ISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL----MKRVTHWAQLTLGMTFNYGALMG 143 (153)
Q Consensus 77 is~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~----~Kr~~~~~~~~~g~~~~~~~l~g 143 (153)
+|++|++.+...+.++++.+++..|+..+.+++.+.++++.||. +||++..+++......+..+..|
T Consensus 95 ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~i~~~g 165 (308)
T PRK12887 95 FSRRQGQRIVIITGILALILAALLGPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGVIVNLG 165 (308)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999993 99999999887665555555444
No 41
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.86 E-value=2.2e-20 Score=150.55 Aligned_cols=142 Identities=15% Similarity=0.066 Sum_probs=110.1
Q ss_pred ccccchHHHHHHHHHHHHHHHhccCCCCCcH--HHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCH
Q psy1910 2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDL--HTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSIST 79 (153)
Q Consensus 2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~ 79 (153)
+++||.+|+....|+..|...++. ..+| ..+.+.+......+...|.+|||+|+|+|++|+|+ ||+++|++|+
T Consensus 17 ~~sRP~~wi~t~~~~~~G~~~~g~---~~~~~~~~~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~--~~i~~G~is~ 91 (292)
T PRK13595 17 LISRPALWVNTVGTLVTGVWLTGH---LYTLDPGVLPLLLYLTLPFNLLIYGLNDLADRETDAASPRK--GGWQGARLSP 91 (292)
T ss_pred HHhCcHHHHHHHHHHHHHHHHhcC---cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCC--CCCCcCccCH
Confidence 679999999999999999877643 3555 55667777777899999999999999999999874 7888999999
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhcc---c-CccccchhhHHHHhhhhHHHHHHHHHhcCC
Q psy1910 80 TDAIIFLAGQLGA----GLLILVQLNLYTIILGSTSLLFVTLYP---L-MKRVTHWAQLTLGMTFNYGALMGYSAVTGC 150 (153)
Q Consensus 80 ~~a~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~Ys---~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~ 150 (153)
+|+..+...+... ++.+++..|+.++.+.+.+.++.+.|| . +|+++.++++.. ...++|...| .+++|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~-~~~g~p~~~~-~~~~g~ 168 (292)
T PRK13595 92 GEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSN-AAYALPLALP-ALALGA 168 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHH-HHHHHHHHHH-HHHcCC
Confidence 9999976655555 444566778888888888888999998 3 888888766654 3345555555 344443
No 42
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.84 E-value=1.1e-19 Score=146.63 Aligned_cols=146 Identities=17% Similarity=0.050 Sum_probs=119.9
Q ss_pred cchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccc--ccccCCCCCCCccccCCCCHHHH
Q psy1910 5 KPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKD--IDSKVSRTKDRPLVNGSISTTDA 82 (153)
Q Consensus 5 rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~--~D~~~~r~~~RPl~sG~is~~~a 82 (153)
||+++.++..|+++|.+++...+ ..+|..++++++++.++|+++|.+|||+|++ .|+.++.+++|++++|.+|++++
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v 79 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWLH-AFVWLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREV 79 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHcC-CccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHH
Confidence 89999999999999999997665 6889999999999999999999999999975 57653334689999999999999
Q ss_pred HHHHHHHHHHHHHHHHH----HHH------HHHHHHHHHHHHHhhccc----CccccchhhHHHHhhhhH-HHHHHHHHh
Q psy1910 83 IIFLAGQLGAGLLILVQ----LNL------YTIILGSTSLLFVTLYPL----MKRVTHWAQLTLGMTFNY-GALMGYSAV 147 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~~~----~~~------~~~~i~~~~~~~~~~Ys~----~Kr~~~~~~~~~g~~~~~-~~l~g~~a~ 147 (153)
...+..+.++++.++.+ .++ ..+.+++.+++..+.||. +|++ .++++..++.++. .+..+++++
T Consensus 80 ~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~-gLGE~~v~i~~G~l~v~g~~yvq 158 (284)
T TIGR00751 80 KTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYA-GLGDISVLVFFGPLAVLGTQYLQ 158 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccC-chHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998877776643 343 456788888888999983 5554 3679999988754 455668899
Q ss_pred cCCCC
Q psy1910 148 TGCVN 152 (153)
Q Consensus 148 ~g~~~ 152 (153)
+|+++
T Consensus 159 ~~~~~ 163 (284)
T TIGR00751 159 AHRVD 163 (284)
T ss_pred cCCCC
Confidence 99876
No 43
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.79 E-value=1.1e-18 Score=140.59 Aligned_cols=108 Identities=18% Similarity=0.118 Sum_probs=85.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1910 29 LPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILG 108 (153)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~ 108 (153)
...+.+.+++.+..++..+++|++|||+|+|+|++| |+ +||+|||++|+++|..++..+.++++.+.... .+.
T Consensus 42 ~~~~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN-~P-~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~ 114 (299)
T PRK13592 42 FRIGIQEFVGVFTVFGFWMILRIADDFKDYETDRRL-FP-HRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNN 114 (299)
T ss_pred CCCchHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhc-CC-CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 344567788888888999999999999999999995 54 99999999999999999999966666555433 223
Q ss_pred HHHHHHHhhc-----cc-CccccchhhHHHHhhhhHHHHHH
Q psy1910 109 STSLLFVTLY-----PL-MKRVTHWAQLTLGMTFNYGALMG 143 (153)
Q Consensus 109 ~~~~~~~~~Y-----s~-~Kr~~~~~~~~~g~~~~~~~l~g 143 (153)
+...+..+.| +. +||.+..+|+.++...+.++..|
T Consensus 115 i~~~~i~~lY~~lm~a~~~K~~~l~gNl~Va~ltg~~f~~g 155 (299)
T PRK13592 115 VGWFLFLYIYGTLMSFWFFKRDKIQNSLPLALVTHNPVMMI 155 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCcchhhhhhccchhhhc
Confidence 3333445556 75 99999999999999888777433
No 44
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.79 E-value=2.6e-18 Score=138.45 Aligned_cols=148 Identities=19% Similarity=0.168 Sum_probs=95.7
Q ss_pred CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH--HHHHHHHHhccccccccccCCCCC-CCccc-cCC
Q psy1910 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVI--MRGAGCTINDLWDKDIDSKVSRTK-DRPLV-NGS 76 (153)
Q Consensus 1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~Nd~~D~~~D~~~~r~~-~RPl~-sG~ 76 (153)
+|++||++|...+.|+++|.++|...+. ..+....+++++.++ .+...|.+|||+|+|.|+.|+||+ +||+. +++
T Consensus 12 ~~l~RP~~~~~~~~p~l~G~~lA~~~~~-~~~~~~~~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk~~~r~~~~s~~ 90 (282)
T PRK12875 12 LVLSRPRFWLYLAGPVVVGVAYAADSVA-DLFSPAAVALFAYFLFPANVFLYGVNDVFDADTDELNPKKDREREVRYRGD 90 (282)
T ss_pred HHHhCccchHHHHHHHHHHHHHHhccCc-ccccHHHHHHHHHHHHHHHHHHhcchhhhhhhccccCCCccCCCCccHHHH
Confidence 4789999999999999999999975421 112223344444333 112334479999999999999987 58777 443
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---c-CccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910 77 ISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYP---L-MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152 (153)
Q Consensus 77 is~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys---~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~ 152 (153)
.+...+. .....+++.+....++......+..++..+.|| . +|+++..+....|+ ..++.+.+|++++|+++
T Consensus 91 ~~~~~~~---~l~~~l~l~l~~~~~~~~~~~ll~~i~~~~~YS~pP~rlk~~p~~~~~~~g~-~~~~~~~~y~~~tg~~~ 166 (282)
T PRK12875 91 RRVLVAV---ALSGALALAFLLVLPPAAWPALLAFLVLSVEYSAPPLRFKTTPVLDSLSNGL-YILPGVAAYALVSGSLP 166 (282)
T ss_pred HHHHHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCccchhccHHHHHHHHH-HHHHHHHHHHHHcCCCc
Confidence 3333222 223334444444444443333344567889998 4 88887766655554 35888899999999876
Q ss_pred C
Q psy1910 153 E 153 (153)
Q Consensus 153 ~ 153 (153)
+
T Consensus 167 ~ 167 (282)
T PRK12875 167 P 167 (282)
T ss_pred H
Confidence 4
No 45
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.79 E-value=5.6e-18 Score=136.49 Aligned_cols=145 Identities=17% Similarity=0.097 Sum_probs=100.9
Q ss_pred CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHH-HHHhccccccccccCCCCCCCccccCCCCH
Q psy1910 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAG-CTINDLWDKDIDSKVSRTKDRPLVNGSIST 79 (153)
Q Consensus 1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~ 79 (153)
.|++||++|+...+|+..|..+|. +.++| .+++..+.....+..+ |.+|||+|+|.|+.|+|+..| .|.+|+
T Consensus 5 ~~~~rP~~wi~~a~pf~~g~~la~---~~~~~-~~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~---~g~i~~ 77 (282)
T PRK13105 5 LLSSRPISWINTAYPFAAAYLLAG---GEIDW-LFVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV---EGAVLD 77 (282)
T ss_pred HHhcccHHHhccHHHHHHHHHHHC---CCCCh-HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC---CCccCH
Confidence 378999999999999999888883 24566 4444444333333333 356999999999999998665 388999
Q ss_pred HHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccc----CccccchhhHHHHhhhhHHHHHHHHHhcCC
Q psy1910 80 TDAII----FLAGQLG-AGLLILVQLNLYTIILGSTSLLFVTLYPL----MKRVTHWAQLTLGMTFNYGALMGYSAVTGC 150 (153)
Q Consensus 80 ~~a~~----~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~----~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~ 150 (153)
+|... +..+..+ .++.+....++.++.++.++++..+.||. +|+++..+++..++.+..+.+.|.+.+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~~~~~ 157 (282)
T PRK13105 78 RAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSPALYGLVLAGAP 157 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 98733 3333333 33333344478888999999889999983 788888878766655555566665555665
Q ss_pred CC
Q psy1910 151 VN 152 (153)
Q Consensus 151 ~~ 152 (153)
++
T Consensus 158 ~~ 159 (282)
T PRK13105 158 FT 159 (282)
T ss_pred cc
Confidence 54
No 46
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.78 E-value=7.8e-18 Score=135.71 Aligned_cols=151 Identities=18% Similarity=0.099 Sum_probs=124.8
Q ss_pred ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccc--ccc--cCCCCCCCccccCCC
Q psy1910 2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKD--IDS--KVSRTKDRPLVNGSI 77 (153)
Q Consensus 2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~--~D~--~~~r~~~RPl~sG~i 77 (153)
++.||+++.+++.|+++|.++|...+...+|..++++++++.+++..+|..|||+|++ .|. .+.+++++-+.+.++
T Consensus 13 ~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~ 92 (303)
T COG1575 13 ELARPKTLPAAIAPVIVGTALAFWYGKSFNLLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSM 92 (303)
T ss_pred HhcCccchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccC
Confidence 5789999999999999999999876545789999999999999999999999999975 665 334567899999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhccc-Ccc--ccchhhHHHHhhhhHHH-HHHHHHhcC
Q psy1910 78 STTDAIIFLAGQLGAGLLILV----QLNLYTIILGSTSLLFVTLYPL-MKR--VTHWAQLTLGMTFNYGA-LMGYSAVTG 149 (153)
Q Consensus 78 s~~~a~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~Ys~-~Kr--~~~~~~~~~g~~~~~~~-l~g~~a~~g 149 (153)
+++..+.+...+......++. ..+|..+.+|+++.+.++.|+. .|+ +.+++++..|+.++.-. .+.++.+++
T Consensus 93 k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG~l~~~~g~~YTgGp~PlgY~gLGEi~~~vffG~l~v~g~~yiqt~ 172 (303)
T COG1575 93 KPALILSLALFLLAGLALLGVILAALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPLIVLGAYYIQTG 172 (303)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHheeeeccCCcCcccCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999998888887776653 3567778899999999999995 555 34577999887765555 555999999
Q ss_pred CCC
Q psy1910 150 CVN 152 (153)
Q Consensus 150 ~~~ 152 (153)
+++
T Consensus 173 ~~~ 175 (303)
T COG1575 173 RLS 175 (303)
T ss_pred cch
Confidence 875
No 47
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.76 E-value=2.1e-17 Score=134.48 Aligned_cols=146 Identities=18% Similarity=0.077 Sum_probs=119.7
Q ss_pred ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccc--ccccCCCCCCCccccCCCCH
Q psy1910 2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKD--IDSKVSRTKDRPLVNGSIST 79 (153)
Q Consensus 2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~--~D~~~~r~~~RPl~sG~is~ 79 (153)
+.+||+++.++..|+++|.+++...++..+|..+++++++..+.|.++|.+|||+|++ .|+. ++ +..+++..++
T Consensus 17 ~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~---~~~~~~~~~~ 92 (304)
T PRK07419 17 AAIKPPMYSVAIMPILVGTAWALGETGVFRLDQFITFLLAAILILAWENLSNDVFDADTGIDKN-KF---HSVVNLTGNK 92 (304)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-cc---cCcccccCcH
Confidence 4689999999999999999999765446889999999999999999999999999987 7875 22 2344666689
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcc---c-CccccchhhHHHHhhhhH-HHHHHHHHhcCC
Q psy1910 80 TDAIIFLAGQLGAGLLILV----QLNLYTIILGSTSLLFVTLYP---L-MKRVTHWAQLTLGMTFNY-GALMGYSAVTGC 150 (153)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~Ys---~-~Kr~~~~~~~~~g~~~~~-~~l~g~~a~~g~ 150 (153)
+++...+..+.++++.++. ..+|..+.+++++.+..+.|| + +|+++ ++++..++.++. .+..++++++|+
T Consensus 93 ~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~~g~~~~~~YT~gP~~l~y~g-LGE~~v~l~~G~l~v~g~~yv~t~~ 171 (304)
T PRK07419 93 SLVFWLANLFLLLGLLGILAIALQSDWTVLGLVLLCCFLGYLYQGPPFRLGYQG-LGEPLCFLAFGPLAVAAALYSQTPS 171 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhheccCCCcccCCCC-chHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999888887653 347778889999999999997 3 77776 699999988754 445668999998
Q ss_pred CC
Q psy1910 151 VN 152 (153)
Q Consensus 151 ~~ 152 (153)
+|
T Consensus 172 ~~ 173 (304)
T PRK07419 172 WS 173 (304)
T ss_pred CC
Confidence 76
No 48
>PLN02922 prenyltransferase
Probab=99.74 E-value=7.6e-17 Score=131.77 Aligned_cols=143 Identities=20% Similarity=0.115 Sum_probs=111.8
Q ss_pred ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccc--ccccCCCCCCCccccCCCCH
Q psy1910 2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKD--IDSKVSRTKDRPLVNGSIST 79 (153)
Q Consensus 2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~--~D~~~~r~~~RPl~sG~is~ 79 (153)
+..||+++.++..|+++|.++|....+..+|..++++++++++.|.++|.+|||+|++ .|+.++.++.|+. | |+
T Consensus 20 ~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~~--~--s~ 95 (315)
T PLN02922 20 RAIKLPMYSVALVPLTVGAAAAYLQTGLFDARRYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVVNLV--G--SR 95 (315)
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCCcc--c--CH
Confidence 5689999999999999999998754346899999999999999999999999999976 6775322223443 3 99
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhcc---c-CccccchhhHHHHhhhhHHHHH-HHHHhcC
Q psy1910 80 TDAIIFLAGQLGAGLLILVQ-----LNLYTIILGSTSLLFVTLYP---L-MKRVTHWAQLTLGMTFNYGALM-GYSAVTG 149 (153)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~Ys---~-~Kr~~~~~~~~~g~~~~~~~l~-g~~a~~g 149 (153)
++....+..+.++++...+. .+|..+.+++.+++.++.|| + +||++ ++++..++.++..... .+++++|
T Consensus 96 ~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~gP~pl~y~g-LGE~~v~i~fG~l~v~g~y~~~~~ 174 (315)
T PLN02922 96 RGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQCPPFRLSYKG-LGEPLCFAAFGPLATTAFYLALAS 174 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhcCCcccccCc-chHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999988888888753322 25778889999999999998 3 77764 6888888887655544 4777776
No 49
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.73 E-value=1.2e-16 Score=129.10 Aligned_cols=147 Identities=18% Similarity=0.117 Sum_probs=117.0
Q ss_pred ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccc--ccccCCCCCCCccccCCCCH
Q psy1910 2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKD--IDSKVSRTKDRPLVNGSIST 79 (153)
Q Consensus 2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~--~D~~~~r~~~RPl~sG~is~ 79 (153)
+.+||+++.+++.|+.+|.++|...++..++..+++++++..+.|.++|.+|||+|++ .|+.+..+ ..++..|+
T Consensus 4 ~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~----~~~~~~~~ 79 (285)
T TIGR02235 4 AAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDRFALFLIAAILILAWINLTNDVFDSDTGIDRFKLHS----IVNLTGSR 79 (285)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCC----cccccCcH
Confidence 5689999999999999999999654446789999999999999999999999999976 57752222 23444578
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcc---c-CccccchhhHHHHhhhh-HHHHHHHHHhcCC
Q psy1910 80 TDAIIFLAGQLGAGLLILV----QLNLYTIILGSTSLLFVTLYP---L-MKRVTHWAQLTLGMTFN-YGALMGYSAVTGC 150 (153)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~Ys---~-~Kr~~~~~~~~~g~~~~-~~~l~g~~a~~g~ 150 (153)
+++...+..+..+++.++. ..+|..+.++.++++..+.|| + +|+++ ++++..++.++ +.+..++++++|+
T Consensus 80 ~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~~g~~~~~~Yt~gP~~l~y~g-LGE~~v~l~~G~l~v~g~~yvqt~~ 158 (285)
T TIGR02235 80 SLVFWLANFFLLIGLVGIAALSWRWQITVLALVGLCCFLGYLYQGPPFRLGYQG-LGEPICWLCFGPLAIAAALYAQSQS 158 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCcccCCCC-ccHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9998888888887777653 356777889999999999998 3 77765 68999998865 4556669999998
Q ss_pred CCC
Q psy1910 151 VNE 153 (153)
Q Consensus 151 ~~~ 153 (153)
+++
T Consensus 159 ~~~ 161 (285)
T TIGR02235 159 FSL 161 (285)
T ss_pred CcH
Confidence 764
No 50
>PLN02878 homogentisate phytyltransferase
Probab=99.72 E-value=4.6e-17 Score=130.31 Aligned_cols=95 Identities=18% Similarity=0.158 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy1910 33 HTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTS- 111 (153)
Q Consensus 33 ~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~- 111 (153)
...+.+.+++.+++.....+|||+|+|+||+|+ ++||+|||++|+++|+.+...+.++|+.+++..|+..+..++..
T Consensus 23 ~~~l~~~~~~l~~niyivglNd~~D~EIDkINk--P~rPIpSG~iS~~~a~~~~~~~~~lg~~la~~~g~~~l~~al~~~ 100 (280)
T PLN02878 23 TGLLEALVPALLMNIYIVGLNQLYDIEIDKVNK--PYLPLASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVS 100 (280)
T ss_pred HHHHHHHHHHHhhhhheechhhhhhhcccccCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 345667788888999999999999999999975 49999999999999999999999999999999988766555544
Q ss_pred HHHHhhccc------Cccccchhh
Q psy1910 112 LLFVTLYPL------MKRVTHWAQ 129 (153)
Q Consensus 112 ~~~~~~Ys~------~Kr~~~~~~ 129 (153)
.+++++||. .||+.....
T Consensus 101 ~~lg~~YS~~lp~lr~k~~~~~aa 124 (280)
T PLN02878 101 FVLGTAYSINLPLLRWKRSAVAAA 124 (280)
T ss_pred HHHHHHHHccCCCcccHHHHHHHH
Confidence 477888982 566655544
No 51
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.61 E-value=5.9e-15 Score=118.50 Aligned_cols=144 Identities=16% Similarity=0.101 Sum_probs=92.9
Q ss_pred ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHH
Q psy1910 2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTD 81 (153)
Q Consensus 2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~ 81 (153)
|+.|+.+..........+..... ..++.......++.++.+.++|++|||+|+|+|++|+| +||.++++...+.
T Consensus 9 ~~~~~~~~~~a~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~--~R~~~s~~~~~~~ 82 (285)
T PRK12872 9 KLFRYGNLLIAALGQSLVYMASL----LLGLPISWLLLLITFLIAAAVYIINYLTDLEEDIINKP--ERVVFSETKAYGL 82 (285)
T ss_pred HHHHHccHHHHHHHHHHHHHHHH----HHcChhHHHHHHHHHHHHHHHHHhhhhcCCchhhcCCC--chHHHHHHHHHHH
Confidence 34455555554444444322111 12233455677788899999999999999999999775 7888844444444
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccc-----CccccchhhHHHHhhhhHHH-HHHHHHhcCCC
Q psy1910 82 AIIFLAGQLGAGLLIL-VQLNLYTIILGSTSLLFVTLYPL-----MKRVTHWAQLTLGMTFNYGA-LMGYSAVTGCV 151 (153)
Q Consensus 82 a~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~Ys~-----~Kr~~~~~~~~~g~~~~~~~-l~g~~a~~g~~ 151 (153)
++.+..+...+++.+. ...|+..+.+++++.+..+.||. +||.+.++++..|...+..+ +.++++.++.+
T Consensus 83 ~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~~~~~ 159 (285)
T PRK12872 83 FLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYYYQLTI 159 (285)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhccccc
Confidence 3333333333333332 22478888888888888999983 67788899999998865544 55677766643
No 52
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.40 E-value=4.3e-12 Score=103.15 Aligned_cols=91 Identities=14% Similarity=0.075 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--
Q psy1910 43 VIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL-- 120 (153)
Q Consensus 43 ~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~-- 120 (153)
.+...++|++|||+|+|+|+.| |+ +||.+ +++.++.++.+..++|+.+++..|+.. +++++.+.++.|+.
T Consensus 68 ~L~~~s~~~iNd~~D~eiD~IN-~P-~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l~ll~~l~g~lYS~Gl 139 (307)
T PRK13591 68 GLIIYSVYTLDRALDSEEDAVN-RS-ELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--LAFLPFITGYLYSKGI 139 (307)
T ss_pred HHHHHHHHHHhhhccchhhhcc-Cc-ccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHhcCCC
Confidence 3678899999999999999995 54 99986 999999999999999999999888753 56677778899983
Q ss_pred --------CccccchhhHHHHhhhhHHHH
Q psy1910 121 --------MKRVTHWAQLTLGMTFNYGAL 141 (153)
Q Consensus 121 --------~Kr~~~~~~~~~g~~~~~~~l 141 (153)
+|+.+.++|+++|+..+....
T Consensus 140 k~~P~plklK~~~glGnl~V~i~~G~~i~ 168 (307)
T PRK13591 140 KIGKFALKLKGGLGVKNIVVGITWGGFIA 168 (307)
T ss_pred CCCCccccccCCCchhHHHHHHHHHHHHH
Confidence 456677889999988776544
No 53
>KOG4581|consensus
Probab=98.31 E-value=6.9e-08 Score=75.76 Aligned_cols=147 Identities=22% Similarity=0.176 Sum_probs=109.2
Q ss_pred ccchHHHHHHHHHHHHHHHhcc-CC-CCCcHHHHHHHHHHHHHHHHHHHHHhccccc--cccccCCCCCCCccccCCCCH
Q psy1910 4 DKPIGSWLLFWPCGWSISMAAV-PG-CLPDLHTLALFGLGAVIMRGAGCTINDLWDK--DIDSKVSRTKDRPLVNGSIST 79 (153)
Q Consensus 4 ~rP~~~~~~~~p~~~g~~~a~~-~~-~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~--~~D~~~~r~~~RPl~sG~is~ 79 (153)
.||-..-.+..|+..|.++|.. ++ ..+++..++++.+..+..++++|..|.|+|. .+|.+. ..+|.++...+.+
T Consensus 68 lrpws~sasl~p~~lgsalayrs~~~~d~~l~~~fl~a~avlavh~agnlvntyfdf~kgid~kk--addrtlvd~il~~ 145 (359)
T KOG4581|consen 68 LRPWSFSASLTPTALGSALAYRSHGAEDFRLATFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKK--ADDRTLVDHILEK 145 (359)
T ss_pred hcccccccccchHhhhhHHHHhhccccchhHHHHHHHHhhheeeecccchhhhhhhhhhcccccc--ccchhHHHHhcCh
Confidence 5788888899999999999863 22 2245666788888888999999999999995 588773 3489999999999
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHH----HHHHHHHHHHHhhcc--c-CccccchhhHHHHhhhhHHHHHHHHHhcC
Q psy1910 80 TDAIIFLAGQLGAGLLIL---VQLNLYT----IILGSTSLLFVTLYP--L-MKRVTHWAQLTLGMTFNYGALMGYSAVTG 149 (153)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~---~~~~~~~----~~i~~~~~~~~~~Ys--~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g 149 (153)
.++.-++.++..+|+..+ ..++|.- ..+-+-+..-.+.|+ . +|....-+-+++=..+.+.+++.+..++|
T Consensus 146 ~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytggigfkyialgdliili~fgpiavlfaf~~q~g 225 (359)
T KOG4581|consen 146 DDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGGIGFKYIALGDLIILILFGPIAVLFAFAIQTG 225 (359)
T ss_pred hheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecccceEEEeccCEEEEEeechHHHHHHHHHhcC
Confidence 999999998888877654 3344431 122223344578898 3 78776555555555677888899999999
Q ss_pred CCC
Q psy1910 150 CVN 152 (153)
Q Consensus 150 ~~~ 152 (153)
+++
T Consensus 226 ~l~ 228 (359)
T KOG4581|consen 226 HLA 228 (359)
T ss_pred cee
Confidence 864
No 54
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=96.34 E-value=0.11 Score=42.16 Aligned_cols=85 Identities=9% Similarity=0.065 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHH
Q psy1910 11 LLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQL 90 (153)
Q Consensus 11 ~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~ 90 (153)
.++.+.+.|..... +..++.. .+...+..+...+...+||+-|.|.||++.+ |-+| =++-++.+..++..+.
T Consensus 142 ~f~~~~v~G~~~~~---~~~~~~~-~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~---~Tlp-v~lG~~~a~~~~~~l~ 213 (282)
T PRK13105 142 HFVSPALYGLVLAG---APFTAAL-WAVLAAFFLWGMASHAFGAVQDVVADREAGI---ASIA-TVLGARRTVRLAVGLY 213 (282)
T ss_pred HHHHHHHHHHHHhh---ccccHHH-HHHHHHHHHHHHHHHHHHhCcchHhHHHcCC---ccch-HHhcHHHHHHHHHHHH
Confidence 33444555554442 2233322 3334445556888889999999999998543 3332 3677888888888888
Q ss_pred HHHHHHHHHHHHH
Q psy1910 91 GAGLLILVQLNLY 103 (153)
Q Consensus 91 ~~~~~~~~~~~~~ 103 (153)
.++.++....++.
T Consensus 214 ~~a~~~~~~~~~~ 226 (282)
T PRK13105 214 AAAAVLMLALPWP 226 (282)
T ss_pred HHHHHHHHHHHhH
Confidence 8888776555544
No 55
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=96.32 E-value=0.14 Score=41.11 Aligned_cols=37 Identities=22% Similarity=0.164 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910 39 GLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS 76 (153)
Q Consensus 39 ~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~ 76 (153)
.+..++.+..-..+||..|+|.|++..++ .-|+.-|+
T Consensus 164 ~~~~~~w~~~~~~i~~~~D~e~D~~~G~~-tlpv~~G~ 200 (282)
T TIGR01475 164 GIGVGFWIAGFDLIYAIQDYEFDRKNGLH-SIPARFGI 200 (282)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHcCCC-chHHHhch
Confidence 44455677777889999999999986664 77777773
No 56
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=95.97 E-value=0.36 Score=38.60 Aligned_cols=50 Identities=20% Similarity=0.033 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHH
Q psy1910 41 GAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGL 94 (153)
Q Consensus 41 ~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~ 94 (153)
..++....-+.+||.-|+|-|+++.++ .=|..-|+ +.+..+...+..+..
T Consensus 169 ~~fl~~~~~~~~~d~~D~e~D~~~G~~-Tlpv~lG~---~~t~~~~~~~~~~~~ 218 (285)
T PRK12872 169 FIFLKSFIREIVFDIKDIEGDRKSGLK-TLPIVLGK---ERTLKFLLILNLLFL 218 (285)
T ss_pred HHHHHHHHHHHHHhcccchhHHHcCCc-ccchhcch---HHHHHHHHHHHHHHH
Confidence 344556667789999999999996653 56665665 444444444444333
No 57
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=95.30 E-value=0.45 Score=38.97 Aligned_cols=61 Identities=11% Similarity=-0.025 Sum_probs=36.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHH
Q psy1910 30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLL 95 (153)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~ 95 (153)
.++..++..+. .-+..+..+..||+-|+|.|+++.|. .-|. ++-++.+..+...+...+..
T Consensus 172 ~~~~~~~~sl~-~gll~~~IL~~Nn~rD~e~D~~~Gk~-TL~v---~lG~~~a~~ly~~l~~~ay~ 232 (304)
T PRK07419 172 WSLIPLAASII-LGLATSLILFCSHFHQVEDDLAAGKR-SPIV---RLGTKRGAQLLPWIVGLIYA 232 (304)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHcCCcchhhHHHcCCc-ceee---eechHhHHHHHHHHHHHHHH
Confidence 44444333333 33567788889999999999997653 4454 34445555544444444433
No 58
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=95.10 E-value=0.36 Score=39.39 Aligned_cols=46 Identities=20% Similarity=0.130 Sum_probs=32.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCC
Q psy1910 30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSI 77 (153)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~i 77 (153)
.++..+++ .+..++.+..-...||+.|+|-|+++.++ .-|+.-|+-
T Consensus 173 ~~~~~~ll-~~~~~~w~~~~~~~~a~~D~e~D~~~G~~-Tlpv~~G~~ 218 (297)
T PRK12871 173 PDMTALLY-MVFFYPWTMAHLGLNDFIDLENDRARGMK-SIAVLYGMK 218 (297)
T ss_pred CcHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHHcCCe-eeeeeechH
Confidence 44443333 34455677888899999999999997654 678777764
No 59
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=95.07 E-value=0.26 Score=39.65 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCC
Q psy1910 30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSI 77 (153)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~i 77 (153)
.++..+ +..+..++.+..-...|++.|+|.|+++.++ .-|..-|+=
T Consensus 163 ~~~~~~-~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~-tl~v~~G~~ 208 (285)
T PRK12847 163 LDIEAI-LLYIGCIFWTIGYDTIYAYQDKKDDLKIGVK-STAIYFGNK 208 (285)
T ss_pred CcHHHH-HHHHHHHHHHHHHHHHHHhccHhhHHHcCCc-hhHHHhccc
Confidence 445433 3444556777778899999999999997664 667766653
No 60
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=95.05 E-value=0.6 Score=37.83 Aligned_cols=57 Identities=9% Similarity=0.049 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy1910 41 GAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLN 101 (153)
Q Consensus 41 ~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~~ 101 (153)
+..+.+.+-..+||+.|+|.|++..+ +.=|. ++-++.+..++..+..++..+....+
T Consensus 173 a~~l~~~~~~~in~i~Die~D~~aGi-~Tlav---~lG~~~a~~~~~~~~~~a~~~~~~~~ 229 (282)
T PRK12875 173 GGWLWAMGMHTFSAIPDIEPDRAAGI-RTTAT---VLGERRTYAYCAACWLLAAAAFAAVD 229 (282)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHcCC-ccchh---hccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34566777789999999999998542 23333 56677777777777777766655444
No 61
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=95.02 E-value=0.5 Score=37.74 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910 41 GAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS 76 (153)
Q Consensus 41 ~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~ 76 (153)
..++.+.+-+..||+.|+|-|++..++ .=|..-|+
T Consensus 163 ~~~~~~~~~~~~~~~~D~e~D~~~G~~-Tl~v~~G~ 197 (279)
T PRK12884 163 MAFLMTLGREIMKDIEDVEGDRLRGAR-TLAILYGE 197 (279)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHcCCe-eechHhcH
Confidence 444566677899999999999996543 55655554
No 62
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=94.97 E-value=0.89 Score=36.91 Aligned_cols=62 Identities=19% Similarity=0.085 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910 10 WLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS 76 (153)
Q Consensus 10 ~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~ 76 (153)
+...+|.+.|..... +. .++...++ .+..++.+.+-..+|++.|+|.|++...+ .-|..-|+
T Consensus 148 ~~~~~~~l~G~~av~--g~-~~~~~~~l-~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~-slpv~~G~ 209 (291)
T PRK12874 148 LSLGLAPIAGVVAVL--GE-IPLWSVFL-ALGVMFWVAGFDLLYSLQDMEFDKKRGLH-SIPSKFGE 209 (291)
T ss_pred HHHHHHHHHHHHHHc--CC-CcHHHHHH-HHHHHHHHHHHHHHHHhccHHHHHHcCCC-cccHHhhh
Confidence 344556666644432 22 34433333 34455777777899999999999986543 66776665
No 63
>PLN02922 prenyltransferase
Probab=94.96 E-value=0.47 Score=39.05 Aligned_cols=54 Identities=7% Similarity=-0.125 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHH
Q psy1910 36 ALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAG 93 (153)
Q Consensus 36 ~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~ 93 (153)
++..+..-+..+..+..||+.|+|.|+++.|. .-|.. +-++.+..+...+...+
T Consensus 191 ~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~-TL~v~---lG~~~a~~l~~~l~~~~ 244 (315)
T PLN02922 191 LSASVLVGLTTTLILFCSHFHQIDGDRAVGKM-SPLVR---LGTEKGSRVVRWAVLLL 244 (315)
T ss_pred HHHHHHHHHHHHHHHHHccCcchhhHHHcCcc-ceeeE---EChHHHHHHHHHHHHHH
Confidence 34444455788888999999999999997653 44543 44455555444444433
No 64
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=94.88 E-value=1.2 Score=35.97 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=30.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910 30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS 76 (153)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~ 76 (153)
.++...++ .+...+.+.+-..+|++.|+|-|++... |.-|..-|+
T Consensus 157 ~~~~~~ll-~~~~~~w~~~~~~i~a~~D~e~D~~~Gv-~sl~v~~G~ 201 (284)
T PRK12888 157 WSWPAVLL-GLAVGLWIGGFDLIYACQDAEVDRRIGV-RSVPARFGV 201 (284)
T ss_pred CCHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHCCC-cCcchhhCc
Confidence 45544433 3345567777889999999999998553 356665554
No 65
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=94.81 E-value=0.65 Score=38.05 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=29.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910 30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS 76 (153)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~ 76 (153)
.++..++.... ..+...+-...||+.|+|.|++..++ .-|+.-|+
T Consensus 187 ~~~~~~l~~~~-~~l~~~~~~~~~d~~D~e~D~~aG~~-Tlpv~~G~ 231 (314)
T PRK07566 187 PSWPIVILALL-YSLGAHGIMTLNDFKSVEGDRQLGLR-SLPVVFGE 231 (314)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHHHHHHhHhHHHcCCc-ccceeEcH
Confidence 44544444333 33456667899999999999996543 66776664
No 66
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=94.77 E-value=0.65 Score=38.19 Aligned_cols=54 Identities=22% Similarity=0.167 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHH
Q psy1910 38 FGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLL 95 (153)
Q Consensus 38 ~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~ 95 (153)
..+...+..+.....||+.|+|.|+++.|. .-|. ++-++.+..+...+...+..
T Consensus 194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~-TL~v---~lG~~~a~~l~~~l~~~a~l 247 (317)
T PRK13387 194 ISLPIIFTIANIMLANNLRDLDEDIKNHRY-TLVY---YIGREKGVVLFAILFYASYL 247 (317)
T ss_pred HHHHHHHHHHHHHHhcCCccchhHHHcCCe-eeee---eEcHHhHHHHHHHHHHHHHH
Confidence 444455666777899999999999997653 4444 44455666555555554443
No 67
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=94.53 E-value=0.81 Score=37.56 Aligned_cols=41 Identities=17% Similarity=0.084 Sum_probs=29.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCcc
Q psy1910 30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPL 72 (153)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl 72 (153)
.+|. .++..+.+.+..+..+..|+..|.|.|+++.|. .-|.
T Consensus 174 ~~~~-~ll~slp~gil~~~Il~aNNirDie~D~~~gk~-TLav 214 (303)
T COG1575 174 LSWA-ILLPSLPVGILIANILLANNLRDIEEDIRNGKY-TLAV 214 (303)
T ss_pred chHH-HHHHHHHHHHHHHHHHHhcccccchhHHhcCCc-ceee
Confidence 4554 344445555788888999999999999997753 4444
No 68
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=94.41 E-value=0.7 Score=37.48 Aligned_cols=61 Identities=7% Similarity=-0.118 Sum_probs=38.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHH
Q psy1910 30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLL 95 (153)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~ 95 (153)
.+|..++..+ -.-+..+..+..||.-|+|.|+++.|+ .-|. ++-++.+..+...+...+.+
T Consensus 159 ~~~~~~l~sl-~~gl~~~~iL~~Nn~rD~e~D~~~Gk~-TL~v---~lG~~~a~~l~~~l~~~~y~ 219 (285)
T TIGR02235 159 FSLIPWKASI-LVGLATTLILFCSHFHQVEDDLAHGKR-SPVV---RLGTKLAAKIVPWVISLSYV 219 (285)
T ss_pred CcHHHHHHHH-HHHHHHHHHHHhcCCccchhHHHcCCc-ceeh---eecHHhHHHHHHHHHHHHHH
Confidence 4555444333 333678888899999999999997643 4444 44456665555555554444
No 69
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=94.37 E-value=1 Score=36.19 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=37.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHH
Q psy1910 30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLI 96 (153)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~~ 96 (153)
.++..+++ .+...+........||+.|+|.|+++.|+ .-|.. +.++.+..+...+..++.+.
T Consensus 166 ~~~~~~~~-~l~~~l~~~~~~~~n~~~D~~~D~~~G~~-Tl~v~---lG~~~a~~~~~~l~~~~~~~ 227 (293)
T PRK06080 166 VDSAVFLP-ALPCGLLIGAVLLANNIRDIETDRENGKN-TLAVR---LGDKNARRLHAALLALAYLC 227 (293)
T ss_pred CCHHHHHH-HHHHHHHHHHHHHhcCCCcchhHHHcCCe-eEEee---ECcHhHHHHHHHHHHHHHHH
Confidence 34443333 33444667888899999999999996543 44543 44555555555555544443
No 70
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=94.30 E-value=1 Score=36.32 Aligned_cols=47 Identities=21% Similarity=0.142 Sum_probs=32.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCC
Q psy1910 30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSIS 78 (153)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is 78 (153)
.++...+ ..++.++.+.+-...|++.|+|.|++... +.=|..-|+-+
T Consensus 158 ~~~~~~l-l~~~~~lw~~~~~~~~a~~D~e~D~~~G~-~tlpv~~G~~~ 204 (281)
T TIGR01474 158 LSTAAWV-LYLANILWTLGYDTIYAMQDKEDDIKIGV-KSTALRFGDNT 204 (281)
T ss_pred CcHHHHH-HHHHHHHHHHHHHHHHHHhhHHhHHHcCC-CcccHHhhhhh
Confidence 4444332 34556677788889999999999998554 36777777543
No 71
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=93.92 E-value=0.64 Score=37.26 Aligned_cols=35 Identities=20% Similarity=0.120 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910 41 GAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS 76 (153)
Q Consensus 41 ~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~ 76 (153)
..++.+.+-...||+.|+|.|++..++ .-|..-|+
T Consensus 162 ~~f~~~~~~~~~~~~~D~~~D~~~G~~-tlpv~~G~ 196 (279)
T PRK09573 162 CAFFSTWSREIVKDIEDIEGDLKENVI-TLPIKYGI 196 (279)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHCCCc-cccHHhhH
Confidence 334455566778999999999986654 66776663
No 72
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=93.88 E-value=1.6 Score=35.81 Aligned_cols=46 Identities=22% Similarity=0.121 Sum_probs=31.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCC
Q psy1910 30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSI 77 (153)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~i 77 (153)
.++..+++ .+..++.+..-..++++.|+|-|++... +.-|..-|+=
T Consensus 190 ~~~~~~~l-~~~~~~w~~~~~~~~a~~D~e~D~~aGi-~slpv~~G~~ 235 (314)
T PRK12878 190 LSLAAVLL-YAGSIAWTIGYDTIYAHQDKEDDALIGV-KSTARLFGDH 235 (314)
T ss_pred CchHHHHH-HHHHHHHHHHHHHHHHhhhHhhHHHcCC-cccchHhchh
Confidence 45544333 3445567777788899999999998543 3667766663
No 73
>PLN00012 chlorophyll synthetase; Provisional
Probab=93.72 E-value=1.8 Score=36.49 Aligned_cols=45 Identities=16% Similarity=0.031 Sum_probs=30.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910 30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS 76 (153)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~ 76 (153)
.++..+++.+ ...+...+-...||+-|+|.|++... +.-|..-|+
T Consensus 250 ~s~~~illal-~~~l~~lai~ivnd~~Die~Dr~aG~-~TLpV~~G~ 294 (375)
T PLN00012 250 LTPDVVVLTL-LYSIAGLGIAIVNDFKSIEGDRALGL-QSLPVAFGV 294 (375)
T ss_pred CCHHHHHHHH-HHHHHHHHHHHHhhhcchhhHHHcCC-cccceeech
Confidence 4444444433 33456777888999999999998653 366776665
No 74
>PRK13591 ubiA prenyltransferase; Provisional
Probab=93.61 E-value=0.8 Score=37.70 Aligned_cols=65 Identities=17% Similarity=0.203 Sum_probs=36.2
Q ss_pred HHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHH---HHHHH-----HHHHHHHHH-HHHHHHhhcc
Q psy1910 51 TINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLL---ILVQL-----NLYTIILGS-TSLLFVTLYP 119 (153)
Q Consensus 51 ~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~---~~~~~-----~~~~~~i~~-~~~~~~~~Ys 119 (153)
.+||+-|.|-|+++.|+ .-|+.=|+ +.+..+...+...+.+ .+... .|...+.++ .+..+...|+
T Consensus 197 iindirDiEGDr~~G~k-TLPV~lG~---~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~ 270 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIK-TLPVSLGE---QKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYS 270 (307)
T ss_pred HHHHhhhhHhHHHcCCe-eEEEEECH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHc
Confidence 68999999999996553 56665553 3333333333333322 22222 233444444 3456777886
No 75
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=93.50 E-value=1.5 Score=34.97 Aligned_cols=52 Identities=21% Similarity=0.101 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHH
Q psy1910 39 GLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGL 94 (153)
Q Consensus 39 ~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~ 94 (153)
.+..++...+-..+||+.|.|-|++..++ .=|..-|+ +.+......+..+.+
T Consensus 163 ~~~~fl~~~~~~~~~~~~D~e~D~~~G~~-tlpv~~G~---~~t~~~~~~~~~~~~ 214 (276)
T PRK12882 163 FALAALATLAREIIKDVEDIEGDRAEGAR-TLPILIGV---RKALYVAAAFLLVAV 214 (276)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHcCCc-cccHHhhH---HHHHHHHHHHHHHHH
Confidence 33344555677899999999999986543 56665554 444454444444333
No 76
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=92.79 E-value=0.77 Score=37.52 Aligned_cols=53 Identities=15% Similarity=0.173 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHH
Q psy1910 39 GLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLI 96 (153)
Q Consensus 39 ~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~~ 96 (153)
.++.++.+.+-.++|+..|+|.|++...+ .-|+.=|+- +..++..+..+.+.+
T Consensus 183 ~~~~~lw~~~~d~iya~~D~e~D~~~Gi~-Slpv~~G~~----a~~~~~~~~~~~v~l 235 (300)
T PRK13106 183 VIGTILWAAGFDLYNHIPDAEFDREMGLH-SFAVVLGKW----ALTFAGLNQLFSVVL 235 (300)
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHCCCC-ccHHHHhhh----HHHHHHHHHHHHHHH
Confidence 44556667777789999999999986543 667766633 333444444444433
No 77
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=92.72 E-value=3.4 Score=33.55 Aligned_cols=39 Identities=13% Similarity=-0.058 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910 37 LFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS 76 (153)
Q Consensus 37 l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~ 76 (153)
+..++.++...+=.++.++.|+|.|++..- |.-|+.=|+
T Consensus 163 ~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv-~S~a~~fG~ 201 (286)
T PRK12895 163 IIFISSSLWIAGFDIIYVIPDIEYDKINGL-KTIMNTYGI 201 (286)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHcCC-CchHHHHCC
Confidence 344556666677779999999999998542 355554443
No 78
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=92.58 E-value=2.3 Score=34.43 Aligned_cols=60 Identities=15% Similarity=0.198 Sum_probs=36.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHH
Q psy1910 30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGL 94 (153)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~ 94 (153)
.++..++.. +...+..+.....||.-|+|.|+++.|+ .-|. ++-++.+..+...+...+.
T Consensus 162 ~~~~~ll~s-l~~g~l~~~il~~Nn~~D~~~D~~~Gk~-Tl~v---~lG~~~a~~l~~~l~~~ay 221 (284)
T TIGR00751 162 VDWVGILPA-VATGLLACAVLNINNLRDIPTDARAGKN-TLAV---RLGDARTRMYHQGLLAVAG 221 (284)
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHcCcccchhHHHcCCE-eehh---hcchHhHHHHHHHHHHHHH
Confidence 445444333 3233455777889999999999997643 3444 4445565555555544443
No 79
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=92.48 E-value=0.84 Score=37.40 Aligned_cols=36 Identities=22% Similarity=0.097 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhccccccccccCCCCCCCccccC
Q psy1910 39 GLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNG 75 (153)
Q Consensus 39 ~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG 75 (153)
.+..++...+-..+||+.|+|-|+++.++ .=|+.=|
T Consensus 188 ~~~~~~~~~~~~l~~di~D~egD~~~Gi~-Tlav~lG 223 (308)
T PRK12887 188 TLFVLVFTFAIAIFKDIPDMEGDRQYQIT-TFTLRLG 223 (308)
T ss_pred HHHHHHHHHHHHHHHhccchhhHHHcCCc-chhHHHh
Confidence 33445666777889999999999997653 4455444
No 80
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=92.35 E-value=1.4 Score=36.54 Aligned_cols=35 Identities=17% Similarity=0.061 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910 41 GAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS 76 (153)
Q Consensus 41 ~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~ 76 (153)
...+...+-..+||+.|+|-|++..++ .-|+.=|+
T Consensus 188 ~~~l~~~~~~~i~d~~D~egD~~~G~k-TlpV~~G~ 222 (331)
T PRK12392 188 LNFFMAIALIIMNDFKSVEGDKEGGLK-SLTVMIGA 222 (331)
T ss_pred HHHHHHHHHHHHHcccchhhHHHcCCe-eeEeEEcH
Confidence 344567777789999999999996553 66665554
No 81
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=92.27 E-value=0.96 Score=36.28 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=28.0
Q ss_pred HHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHH
Q psy1910 44 IMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAG 88 (153)
Q Consensus 44 ~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~ 88 (153)
+...+....||+.|+|-|+++.|+ .-|..-|+ +.+..+...
T Consensus 172 l~~~~i~~~nd~~D~~~D~~~G~~-Tl~v~lG~---~~a~~l~~~ 212 (283)
T TIGR01476 172 LGAHGIMTLNDFKSVEGDRQLGLR-SLPVMIGV---KRAAIVAVT 212 (283)
T ss_pred HHHHHHHHHHhccchhhHHHcCCc-CcceEEcH---HHHHHHHHH
Confidence 456667899999999999996553 56666555 444444333
No 82
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=92.26 E-value=1 Score=36.81 Aligned_cols=44 Identities=18% Similarity=0.186 Sum_probs=29.0
Q ss_pred HHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHH
Q psy1910 44 IMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLG 91 (153)
Q Consensus 44 ~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~ 91 (153)
+...+-...||+.|+|.|+++.|+ .=|..-| ++.+......+..
T Consensus 194 l~~~~i~~~n~~~D~e~D~~~G~~-Tlpv~lG---~~~a~~~~~~l~~ 237 (306)
T TIGR02056 194 IAGLGIAIVNDFKSVEGDRALGLQ-SLPVAFG---IETAAWICVGAID 237 (306)
T ss_pred HHHHHHHHHHHccChHHHHHcCCc-CcchhcC---hHHHHHHHHHHHH
Confidence 466677789999999999986543 5555444 4555555444433
No 83
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=91.75 E-value=3.5 Score=33.19 Aligned_cols=55 Identities=20% Similarity=0.082 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHH
Q psy1910 35 LALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAG 93 (153)
Q Consensus 35 ~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~ 93 (153)
..+..++..+...+--+++|+.|+|-|+++..+ .-|..- -++.+..++....+..
T Consensus 169 ~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~-s~~~~~---G~~~a~~l~~~~~~~~ 223 (289)
T COG0382 169 AWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLK-SLPVLF---GIKKALALALLLLLAS 223 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccchHhcCCc-chHHHh---CchhHHHHHHHHHHHH
Confidence 344445556677777799999999999996654 345433 3455555555555333
No 84
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=91.37 E-value=1.1 Score=35.89 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910 43 VIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS 76 (153)
Q Consensus 43 ~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~ 76 (153)
++.+.+-...||..|+|-|++..++ .=|..-|+
T Consensus 164 fl~~~~~~~~~~~~D~e~D~~~G~~-Tlpv~~G~ 196 (277)
T PRK12883 164 FLVNVAREIMKDIEDIEGDKAKGAK-TLPIIIGK 196 (277)
T ss_pred HHHHHHHHHHhhhhhhccHHHcCCc-CcChHhcH
Confidence 3444556677999999999997654 66776665
No 85
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=91.30 E-value=6.5 Score=31.83 Aligned_cols=49 Identities=18% Similarity=0.164 Sum_probs=33.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910 30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT 80 (153)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~ 80 (153)
.++... +..+..++.+.+-..+|++.|+|-|++...+ .-|+.-|+=+..
T Consensus 164 ~~~~~~-~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~-slav~~G~~~~~ 212 (290)
T PRK12870 164 LDLGTW-LLWAATVFWTLGFDTVYAMSDREDDLRIGVN-SSAIFFGRYAPE 212 (290)
T ss_pred CCHHHH-HHHHHHHHHHHHHHHHHHhhhHhhHHHCCCc-chhHHhccccHH
Confidence 344333 3344566788888899999999999986543 566665654433
No 86
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=91.18 E-value=4.8 Score=32.64 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHH
Q psy1910 42 AVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIF 85 (153)
Q Consensus 42 ~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~ 85 (153)
..+..+.....||..|+|.|+++.|+ .=|. ++.++.+..+
T Consensus 180 ~~l~~~~il~~n~~~D~e~D~~~G~~-Tlav---~lG~~~a~~~ 219 (296)
T PRK05951 180 LGLLMALVLLSNNLRDIEDDERKGIP-TLAV---IFGRRGAALY 219 (296)
T ss_pred HHHHHHHHHHHCCCccchhHHHCCCe-eeee---eEcHhhHHHH
Confidence 33556778899999999999986542 3333 5666666443
No 87
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=89.94 E-value=5 Score=32.26 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCC
Q psy1910 37 LFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSIS 78 (153)
Q Consensus 37 l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is 78 (153)
+..+..++-+..-...|++.|+|-|++... |.-|+.-|+=+
T Consensus 166 ~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~-~tlpv~~G~~~ 206 (282)
T PRK12848 166 LLFLANILWTVAYDTQYAMVDRDDDLKIGI-KSTAILFGRYD 206 (282)
T ss_pred HHHHHHHHHHHHHHHHHHhccHhhHHHcCC-ccccHHhcccc
Confidence 444556667777778999999999998654 36677766543
No 88
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=87.78 E-value=4.4 Score=31.20 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhccccccccccCCC
Q psy1910 43 VIMRGAGCTINDLWDKDIDSKVSR 66 (153)
Q Consensus 43 ~~~~~~~~~~Nd~~D~~~D~~~~r 66 (153)
.+........||+-|+|.|++..|
T Consensus 156 ~~~~~~~~~~~~~~D~~~D~~~g~ 179 (257)
T PF01040_consen 156 FLLIFAIMFFNDIRDIEGDRKAGR 179 (257)
T ss_pred HHHHHHHHHHHHhhhHHHHHHcCC
Confidence 456677778889999999987554
No 89
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=87.61 E-value=14 Score=30.00 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=29.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCC
Q psy1910 30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSI 77 (153)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~i 77 (153)
.++... +..+..++.+.+-..+|++.|+|.|++... |.-|+.-|+=
T Consensus 160 ~~~~~~-ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi-~slpv~~G~~ 205 (291)
T PRK12886 160 IELPAI-LLGLAVLFWVAGFDILYALQDLEFDRKEGL-HSIPAKLGVN 205 (291)
T ss_pred CcHHHH-HHHHHHHHHHHHHHHHHHhccHHhHHHcCC-cCcchhcCch
Confidence 344433 333444455666668899999999998554 3677777763
No 90
>PRK13595 ubiA prenyltransferase; Provisional
Probab=87.09 E-value=15 Score=30.02 Aligned_cols=103 Identities=8% Similarity=-0.015 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhc-c-
Q psy1910 43 VIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYT-IILGSTSLLFVTLY-P- 119 (153)
Q Consensus 43 ~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~Y-s- 119 (153)
.+...+...+-|+.|.|-||+..- +.=|. ++.++.+..++..+.+++..+....++.. +.+.+.......-| +
T Consensus 179 ~~w~~g~dii~ai~DiegDr~~Gi-~Slpv---~lG~r~a~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (292)
T PRK13595 179 MAWSVGKHAFDAAQDIPADRAAGT-RTVAT---TLGVRGTALYALAWFLLAGALLWPVSRLTALALWLICGGMALALWRR 254 (292)
T ss_pred HHHHHHHHHHHhccChHhHHHcCC-eechH---HhCcHhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcC
Confidence 344578889999999999998432 23343 45567788888888888877766655442 23333333222222 1
Q ss_pred -------cCccccchhhHHHHhhhhHHHHHHHHHhcCCC
Q psy1910 120 -------LMKRVTHWAQLTLGMTFNYGALMGYSAVTGCV 151 (153)
Q Consensus 120 -------~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~ 151 (153)
-.-|+..+-|.+.|+...+..+ |..+.|..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~ 291 (292)
T PRK13595 255 PTPETAHRLYPLSIVTPWIVGTVAGVLLV--AALVRGGY 291 (292)
T ss_pred CCHHHHhccchHHHHHhHHHHHHHHHHHH--HHHHccCC
Confidence 0112233446666655444444 66666654
No 91
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=85.51 E-value=18 Score=29.40 Aligned_cols=38 Identities=29% Similarity=0.054 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCC
Q psy1910 39 GLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSI 77 (153)
Q Consensus 39 ~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~i 77 (153)
.++.++.+..-..+....|+|-|++... |.-|..-|+=
T Consensus 172 ~~~~~~W~~~~d~~ya~~D~e~D~~~Gi-~sl~v~~G~~ 209 (289)
T PLN02809 172 YASGVCWTLVYDTIYAHQDKEDDLKVGV-KSTALRFGDD 209 (289)
T ss_pred HHHHHHHHHHHHHHHHHhchhhHHhCCC-cccchhhcHH
Confidence 3333444444457777789999998654 3667766653
No 92
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=84.98 E-value=19 Score=29.14 Aligned_cols=45 Identities=18% Similarity=0.066 Sum_probs=27.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910 30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS 76 (153)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~ 76 (153)
.++...++ .+..++.+..-...|.+.|+|-|++... |.=|+.-|+
T Consensus 165 ~~~~~~~l-~~~~~lw~~~~~~~~~~~d~~D~~~~G~-~tlpv~~G~ 209 (296)
T PRK04375 165 LSWEALIL-FLIIFLWTPPHFWALAIFRKDDYAAAGI-PMLPVVKGI 209 (296)
T ss_pred CCHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHcCC-CccceeeCH
Confidence 45543333 3344556666667778899999976433 355665554
No 93
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=83.85 E-value=22 Score=29.03 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910 40 LGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS 76 (153)
Q Consensus 40 ~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~ 76 (153)
++.++-+..=..+-.+.|+|-|++..- +.-|..-|+
T Consensus 177 ~~~~~W~~~~d~iyA~qD~edD~~~Gv-~slpv~~G~ 212 (294)
T PRK12873 177 LATLLWTFGFDTVYAMADRRDDAKIGL-NSSALSLGS 212 (294)
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHcCC-cccchhcCh
Confidence 455556666667788889999998543 467777775
No 94
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=83.05 E-value=22 Score=28.38 Aligned_cols=23 Identities=26% Similarity=0.125 Sum_probs=14.3
Q ss_pred hccccccccccCCCCCCCccccCC
Q psy1910 53 NDLWDKDIDSKVSRTKDRPLVNGS 76 (153)
Q Consensus 53 Nd~~D~~~D~~~~r~~~RPl~sG~ 76 (153)
+.+.|+|.|++..++ .=|..-|+
T Consensus 178 ~a~~~~~dd~~~G~~-tl~v~~G~ 200 (280)
T TIGR01473 178 LALKYKDDYRAAGIP-MLPVVKGE 200 (280)
T ss_pred HHHHhhhhHHHCCCc-cCCcccCH
Confidence 346788888775443 55665554
No 95
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=81.63 E-value=25 Score=28.21 Aligned_cols=31 Identities=13% Similarity=-0.040 Sum_probs=18.9
Q ss_pred HHHHHHHHHhccccccccccCCCCCCCccccC
Q psy1910 44 IMRGAGCTINDLWDKDIDSKVSRTKDRPLVNG 75 (153)
Q Consensus 44 ~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG 75 (153)
+.+.+-..-|++.|+|-|++...+ .-|..-|
T Consensus 170 ~w~~~~~~~l~~~d~edd~~~G~~-tlpv~~G 200 (279)
T PRK12869 170 LWTPGHIWSLALKYREDYRRAGVP-MLPAVVG 200 (279)
T ss_pred HHHHHHHHHHHHHhHHhHHHcCCe-ecceeec
Confidence 344444455788899999774432 4555554
No 96
>PLN02878 homogentisate phytyltransferase
Probab=79.84 E-value=13 Score=30.32 Aligned_cols=45 Identities=11% Similarity=0.021 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHH
Q psy1910 43 VIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLG 91 (153)
Q Consensus 43 ~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~ 91 (153)
++...+-..+||+-|.|-||+..++ .-|+.=| ++.+..++..+..
T Consensus 166 ~~f~~~i~i~KDi~DieGD~~~Gi~-Tlpv~lG---~~~~~~i~~~ll~ 210 (280)
T PLN02878 166 CFFSVVIALFKDIPDVEGDRIFGIR-SFSVRLG---QKRVFWLCVNLLE 210 (280)
T ss_pred HHHHHHHHHHhhCcCchhHHHCCCc-eechhhC---hHHHHHHHHHHHH
Confidence 3445556699999999999996653 5565444 3444444444433
No 97
>PF14256 YwiC: YwiC-like protein
Probab=73.59 E-value=30 Score=24.68 Aligned_cols=115 Identities=17% Similarity=0.020 Sum_probs=54.9
Q ss_pred chHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHH-HhccccccccccCCCCCCCccccCCCCHHHHHH
Q psy1910 6 PIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCT-INDLWDKDIDSKVSRTKDRPLVNGSISTTDAII 84 (153)
Q Consensus 6 P~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~ 84 (153)
+-.|.+...|.+.|. .++ ++|.+..+.... ++...+.+- .+-.-|++ +|+ .| -.+-++.
T Consensus 5 HGAW~Ml~~P~l~G~-~~~-----~~w~~~~L~~aw-~~~yl~~~p~~~~~k~r~-----~~~-~~-------~~~~~~~ 64 (129)
T PF14256_consen 5 HGAWAMLLVPFLLGM-AGG-----PSWAHLPLLLAW-LFGYLAFYPFLLWLKQRR-----RRR-PR-------YLKWALI 64 (129)
T ss_pred hhhHHHHHHHHHHHH-Hhc-----ccHHHHHHHHHH-HHHHHHHHHHHHHHhccc-----ccc-hh-------HHHHHHH
Confidence 345789999999998 442 455554333222 223333332 22222332 111 11 1223555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhccc-CccccchhhHHHHhhhhHHHH
Q psy1910 85 FLAGQLGAGLLILVQLNLYTIILGSTSL---LFVTLYPL-MKRVTHWAQLTLGMTFNYGAL 141 (153)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~Ys~-~Kr~~~~~~~~~g~~~~~~~l 141 (153)
++......++.... .+|..+..+.... .....|.. -|.+...+++..-...++...
T Consensus 65 Yg~~a~~~~l~~l~-~~p~ll~~~~~~~pl~~v~~~~~~~~~eRsLlndl~~i~a~~l~~~ 124 (129)
T PF14256_consen 65 YGAIALVFGLPALL-YAPRLLWWALLFLPLFAVNLYFAKRKRERSLLNDLAAIAAFSLMGP 124 (129)
T ss_pred HHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHhHHHHHHHHHHHH
Confidence 65555555543333 4455444444332 34455555 444677777665554444433
No 98
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=70.20 E-value=5.2 Score=35.07 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q psy1910 36 ALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQ-------LNLYTIILG 108 (153)
Q Consensus 36 ~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~-------~~~~~~~i~ 108 (153)
.+...+..++..++-+-+|+||.-+|+..+ +++++--+| +..+...+++..++.. +--.++.++
T Consensus 356 aLstaaGL~l~iasavsHDiY~~vik~~as--e~~~v~vaR-------i~~v~~~vva~~lgi~~~gnVaflVa~AF~lA 426 (529)
T COG4147 356 ALSTAAGLLLVIASAVSHDLYAMVIKKGAT--EKKEVRVAR-------IAVVILGVVAILLGILPPGNVAFLVALAFALA 426 (529)
T ss_pred HHHHHhhHHHHHHHHHHhHHHHHHhCCCCC--ccceehhHH-------HHHHHHHHHHHHheecCCccHHHHHHHHHHHH
Confidence 455556667888888899999988877632 344553333 3333444444443321 111122222
Q ss_pred HHHHHHHhhcc-cCccccchhhHHHHh
Q psy1910 109 STSLLFVTLYP-LMKRVTHWAQLTLGM 134 (153)
Q Consensus 109 ~~~~~~~~~Ys-~~Kr~~~~~~~~~g~ 134 (153)
.-+..-...|+ +.||.+--+-+..++
T Consensus 427 aSa~fPvivlglfWKr~n~~GAi~G~~ 453 (529)
T COG4147 427 ASANFPVIVLGLFWKRLNTAGAIAGML 453 (529)
T ss_pred HHcccchhhHHHHHhhccHHhHHHHHH
Confidence 22223345566 378877666555444
No 99
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=65.05 E-value=74 Score=25.81 Aligned_cols=22 Identities=32% Similarity=0.250 Sum_probs=17.9
Q ss_pred CCccccCCCCHHHHHHHHHHHHHH
Q psy1910 69 DRPLVNGSISTTDAIIFLAGQLGA 92 (153)
Q Consensus 69 ~RPl~sG~is~~~a~~~~~~~~~~ 92 (153)
.|.+ .+++.++|+..++.+..+
T Consensus 141 ~~~~--~~l~~~da~~IGlaQ~lA 162 (270)
T COG1968 141 LRDL--DDLTLRDALIIGLAQCLA 162 (270)
T ss_pred cCCh--hhCCHHHHHHHHHHHHHH
Confidence 4444 789999999999988776
No 100
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=63.86 E-value=58 Score=24.21 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q psy1910 34 TLALFGLGAVIMRGAGCTINDLW 56 (153)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~~Nd~~ 56 (153)
..++..++....-+.+|++++|.
T Consensus 29 ~i~~~Gla~~vA~a~Sma~GeYv 51 (169)
T TIGR00267 29 VIILAGLGGGVANGMSNAFGAFT 51 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777888999999999
No 101
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=62.14 E-value=88 Score=25.68 Aligned_cols=30 Identities=23% Similarity=0.152 Sum_probs=19.5
Q ss_pred HHHHHhccccccccccCCCCCCCccccCCCC
Q psy1910 48 AGCTINDLWDKDIDSKVSRTKDRPLVNGSIS 78 (153)
Q Consensus 48 ~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is 78 (153)
+-.++.+..|+|.|++.. -+.=|..-|+=+
T Consensus 187 g~DiiYa~qD~e~D~~~G-l~Slpv~fG~~~ 216 (300)
T PRK12876 187 ANDIIYAIQDLEFDRKEG-LFSIPARFGEKK 216 (300)
T ss_pred HHHHHHHHcCHhhHHHcC-CccchHHHCchh
Confidence 344677799999999844 235566555443
No 102
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=61.54 E-value=33 Score=23.17 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhhccc-Ccccc
Q psy1910 81 DAIIFLAGQLGAGLLILVQ---------------LNLYTIILGSTSLLFVTLYPL-MKRVT 125 (153)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~---------------~~~~~~~i~~~~~~~~~~Ys~-~Kr~~ 125 (153)
.+++.+++++++++++++. ++..++++|++..+-.++|+. -|+..
T Consensus 13 ~vli~GiiLL~~aCIfAfidfsK~~~~~~~~wRalSii~FI~giil~lG~~i~s~ygr~C~ 73 (92)
T PF05767_consen 13 GVLIGGIILLIAACIFAFIDFSKNTKPTDYTWRALSIICFILGIILTLGIVIFSMYGRYCR 73 (92)
T ss_pred hHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 6788899999999998852 223356666666666777874 45543
No 103
>PRK09597 lipid A 1-phosphatase; Reviewed
Probab=58.62 E-value=82 Score=24.20 Aligned_cols=28 Identities=7% Similarity=-0.131 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy1910 32 LHTLALFGLGAVIMRGAGCTINDLWDKD 59 (153)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~~Nd~~D~~ 59 (153)
|.......++....+..++.++..+||+
T Consensus 76 ~~g~~~l~~al~~~~ll~~~LK~~~~R~ 103 (190)
T PRK09597 76 AIGLFQVANASIATTLLTHTTKRALNHV 103 (190)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4444555556666777788899999986
No 104
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=55.50 E-value=72 Score=22.59 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=23.1
Q ss_pred CCccccCCCCHHHHHHHHHHHHHHHHHHHH
Q psy1910 69 DRPLVNGSISTTDAIIFLAGQLGAGLLILV 98 (153)
Q Consensus 69 ~RPl~sG~is~~~a~~~~~~~~~~~~~~~~ 98 (153)
+-|.+=+-+|..|.++.+.+..++++.++.
T Consensus 13 ~ePvV~rGlT~~El~~~a~~~~~~g~~~gl 42 (121)
T PF11990_consen 13 REPVVFRGLTADELGLAAGVGFVAGLVVGL 42 (121)
T ss_pred CCCCeecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 447777778999998888888877776653
No 105
>PLN02776 prenyltransferase
Probab=55.49 E-value=1.2e+02 Score=25.31 Aligned_cols=42 Identities=14% Similarity=0.003 Sum_probs=24.3
Q ss_pred cccccccccCCCCCCCcccc--CCCCHHHHHHHHHHHHHHHHHHH
Q psy1910 55 LWDKDIDSKVSRTKDRPLVN--GSISTTDAIIFLAGQLGAGLLIL 97 (153)
Q Consensus 55 ~~D~~~D~~~~r~~~RPl~s--G~is~~~a~~~~~~~~~~~~~~~ 97 (153)
|.|+|-|+. -.-|.-|++. |+-+.++...+...+..+++...
T Consensus 173 ~~~~dDy~~-ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~ 216 (341)
T PLN02776 173 YMCRDDYAA-GGYRMLSLADATGRRTALVALRNCLYLAPLGFLAY 216 (341)
T ss_pred HHhHHHHHh-CCCcccCccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334553333 3333557776 45667777777777777776543
No 106
>PHA02898 virion envelope protein; Provisional
Probab=54.61 E-value=40 Score=22.71 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhhcc
Q psy1910 80 TDAIIFLAGQLGAGLLILVQ---------------LNLYTIILGSTSLLFVTLYP 119 (153)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~---------------~~~~~~~i~~~~~~~~~~Ys 119 (153)
..++..+++++.+++++++. +...++++|.+..+-.++|+
T Consensus 12 s~vli~GIiLL~~ACIfAfidfSK~~~~~~~~wRalSii~FIlgivl~lG~~ifs 66 (92)
T PHA02898 12 SYVVAFGIILLIVACICAYIELSKSEKPADSALRSISIISFILAIILILGIIFFK 66 (92)
T ss_pred chHHHHHHHHHHHHHHHheehhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788889999999988752 12235566666555567777
No 107
>TIGR03510 XapX XapX domain. This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (Pfam model pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins.
Probab=52.25 E-value=24 Score=21.04 Aligned_cols=38 Identities=32% Similarity=0.394 Sum_probs=30.2
Q ss_pred HHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHh
Q psy1910 110 TSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAV 147 (153)
Q Consensus 110 ~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~ 147 (153)
.+++.+.+|+++|=..+-+..+.|+.+-+....|+-++
T Consensus 8 ~G~~vG~~~~~l~vp~PAPP~laGl~gi~gm~~G~~~~ 45 (49)
T TIGR03510 8 AGLLVGALYSLLKVPSPAPPVLAGLVGLLGMLLGEQAV 45 (49)
T ss_pred HHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhHHHH
Confidence 45677888998888888888888888888888886553
No 108
>PHA03048 IMV membrane protein; Provisional
Probab=51.11 E-value=56 Score=22.04 Aligned_cols=41 Identities=20% Similarity=0.193 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhccc
Q psy1910 80 TDAIIFLAGQLGAGLLILVQ--------------LNLYTIILGSTSLLFVTLYPL 120 (153)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~--------------~~~~~~~i~~~~~~~~~~Ys~ 120 (153)
..+++.+++++.+++++++. +...++++|.+..+-.++|+.
T Consensus 12 S~vli~GIiLL~~aCIfAfidfsK~k~~~~~wRalsii~FIlgivl~lG~~ifsm 66 (93)
T PHA03048 12 STALIGGIILLAASCIFAFVDFSKNKATVTVWRALSGIAFVLGIVMTIGMLIYSM 66 (93)
T ss_pred chHHHHHHHHHHHHHHHhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888899999988752 223356666666566677773
No 109
>PF14007 YtpI: YtpI-like protein
Probab=47.01 E-value=39 Score=22.69 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=33.1
Q ss_pred CCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy1910 66 RTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQ-LNLYTIILGSTSL 112 (153)
Q Consensus 66 r~~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~ 112 (153)
|+ ++|+-++..+.|.-..++..+...|+-..+. .+....+++.+.+
T Consensus 21 Rs-~~p~~k~~~~aka~ialG~fl~~fgiNQ~~~~~st~~~iV~~ifl 67 (89)
T PF14007_consen 21 RS-KDPMEKKWYSAKANIALGIFLILFGINQMFLFGSTVRLIVGAIFL 67 (89)
T ss_pred hc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 44 7899999999999999999888888876654 2334445555443
No 110
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.93 E-value=60 Score=23.04 Aligned_cols=50 Identities=10% Similarity=0.012 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcccCcccc
Q psy1910 76 SISTTDAIIFLAGQLGAGLLILVQ-LNLYTIILGSTSLLFVTLYPLMKRVT 125 (153)
Q Consensus 76 ~is~~~a~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~Ys~~Kr~~ 125 (153)
+=-++++...+..++.+++.++++ .++...-.++..+.+...+-++||++
T Consensus 67 ~ai~~~aK~~ai~~i~~~~~~s~~~v~~~~~r~~l~~v~l~~~~~~~~~~P 117 (119)
T COG2832 67 GAIPRKAKIKAILLITLSIGISFYFVPVLWVRVALVAVILFGTAYIFKRRP 117 (119)
T ss_pred CCCChhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhheeEecC
Confidence 333567788888888888888865 44444444444333333333466654
No 111
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=45.53 E-value=39 Score=19.93 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=13.9
Q ss_pred HHHHHHHHhccccccccc
Q psy1910 45 MRGAGCTINDLWDKDIDS 62 (153)
Q Consensus 45 ~~~~~~~~Nd~~D~~~D~ 62 (153)
.--...++|.++|.+.|=
T Consensus 17 l~lyl~ald~~CDQg~~F 34 (47)
T PRK10299 17 LLLWAQVFNMMCDQDVQF 34 (47)
T ss_pred HHHHHHHHHHHhcCCccc
Confidence 336778999999998653
No 112
>PRK01821 hypothetical protein; Provisional
Probab=45.33 E-value=39 Score=24.36 Aligned_cols=57 Identities=9% Similarity=-0.077 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcH-HHHHHHHHHHHHHHHHHHHHhccccccccccCCC
Q psy1910 9 SWLLFWPCGWSISMAAVPGCLPDL-HTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSR 66 (153)
Q Consensus 9 ~~~~~~p~~~g~~~a~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r 66 (153)
..++++|..+|..--...= ..++ ...+..++++.+.-..+-..=|+..++.+...+|
T Consensus 71 m~LfFVPa~VGim~~~~ll-~~~~~~il~~ivvST~lvl~vtg~~~~~l~~~~~~~~~~ 128 (133)
T PRK01821 71 MALLFVPIGVGVMQYYDLL-RAQFGPIVVSCIVSTLVVLLVVGWSSHYVHGERKVIGQK 128 (133)
T ss_pred HHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Confidence 4678899988865332110 1123 3344555566655555556666666554444333
No 113
>KOG2513|consensus
Probab=43.60 E-value=38 Score=30.67 Aligned_cols=59 Identities=10% Similarity=-0.063 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccc-CCCCCCCccccCCCCHHHHHHHHHHHHHHHH
Q psy1910 36 ALFGLGAVIMRGAGCTINDLWDKDIDSK-VSRTKDRPLVNGSISTTDAIIFLAGQLGAGL 94 (153)
Q Consensus 36 ~l~~~~~~~~~~~~~~~Nd~~D~~~D~~-~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~ 94 (153)
+..+-+.+-.....+.+|+..++..|+. .-+.-+||.|+..-+....-..-..+.++|+
T Consensus 487 vVlFS~~~PLA~~~aLvnNv~eirsda~Kl~~~~krPfp~r~~~IG~Wq~~l~~lSvls~ 546 (647)
T KOG2513|consen 487 VVLFSCAFPLAAIFALVNNVIEIRSDALKLCLVLKRPFPRRVANIGAWQNALELLSVLSC 546 (647)
T ss_pred HHHHHhHhhHHHHHHHHHHHhhhhHHHHHHHHhcCCCCcchhhhhHHHHHHHHHHHHHHH
Confidence 3444555667777889999999999985 2234588999866666554444333444443
No 114
>PF15033 Kinocilin: Kinocilin protein
Probab=41.72 E-value=33 Score=23.86 Aligned_cols=29 Identities=21% Similarity=0.521 Sum_probs=19.3
Q ss_pred HHHHHHH-HHHhhcccCccccchhhHHHHh
Q psy1910 106 ILGSTSL-LFVTLYPLMKRVTHWAQLTLGM 134 (153)
Q Consensus 106 ~i~~~~~-~~~~~Ys~~Kr~~~~~~~~~g~ 134 (153)
+++..++ ++...|+++|.+.-.+++..++
T Consensus 44 Figaaglgll~~~yPfl~arfnldhilp~i 73 (124)
T PF15033_consen 44 FIGAAGLGLLILAYPFLKARFNLDHILPAI 73 (124)
T ss_pred hhHHhHHHHHHHhcccchhhcCccceeccC
Confidence 4444443 4566699988887777776554
No 115
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=39.20 E-value=69 Score=27.33 Aligned_cols=47 Identities=13% Similarity=-0.060 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhccccccccccCC-CCCCCccccCCCCHHHHHHH
Q psy1910 39 GLGAVIMRGAGCTINDLWDKDIDSKVS-RTKDRPLVNGSISTTDAIIF 85 (153)
Q Consensus 39 ~~~~~~~~~~~~~~Nd~~D~~~D~~~~-r~~~RPl~sG~is~~~a~~~ 85 (153)
+.+.+-....-..+|++.+...|+..= +..+||.|++.=+.......
T Consensus 331 F~~afPlapl~allnN~~eir~D~~Kl~~~~rRP~p~~~~~IG~W~~i 378 (452)
T PF04547_consen 331 FSAAFPLAPLFALLNNIVEIRLDAFKLLYLYRRPVPRRASSIGIWNNI 378 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCCCCcccccchhhhHHH
Confidence 334455566667899999999998611 23479999877776654433
No 116
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=37.91 E-value=47 Score=21.22 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccC
Q psy1910 36 ALFGLGAVIMRGAGCTINDLWDKDIDSKV 64 (153)
Q Consensus 36 ~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~ 64 (153)
...+++.+++...++..|=||-++.||..
T Consensus 35 aIGvi~gi~~~~lt~ltN~YFK~k~drr~ 63 (68)
T PF04971_consen 35 AIGVIGGIFFGLLTYLTNLYFKIKEDRRK 63 (68)
T ss_pred hHHHHHHHHHHHHHHHhHhhhhhhHhhhH
Confidence 45566777888999999999999999874
No 117
>PF10954 DUF2755: Protein of unknown function (DUF2755); InterPro: IPR020513 This entry contains membrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=37.74 E-value=90 Score=21.13 Aligned_cols=63 Identities=19% Similarity=0.112 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccccc--ccc--cCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHH
Q psy1910 31 DLHTLALFGLGAVIMRGAGCTINDLWDKD--IDS--KVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLI 96 (153)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~--~D~--~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~~ 96 (153)
....+..+++-.++.+++++.+|-....+ .|. +++.+ .||= =+|.....-+++++-+.+|+.+
T Consensus 20 t~gNiAYAlFVLfcfWaGaQlLn~LvHAPGV~EhLmQ~Qds-~RPr--veigl~VgTlFgLiPFL~Gc~~ 86 (100)
T PF10954_consen 20 TPGNIAYALFVLFCFWAGAQLLNMLVHAPGVYEHLMQVQDS-GRPR--VEIGLGVGTLFGLIPFLAGCLI 86 (100)
T ss_pred CcchhHHHHHHHHHHHhhHHHHHHHHhCcHHHHHHHHHHhc-CCCc--eEEeehhHHHHHHHHHHHHHHH
Confidence 34556666666778999999999998854 333 33333 6764 4555555556666655555443
No 118
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=36.36 E-value=2.4e+02 Score=23.03 Aligned_cols=77 Identities=10% Similarity=-0.012 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCC-CCHHHHHHHHHHHHH
Q psy1910 13 FWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS-ISTTDAIIFLAGQLG 91 (153)
Q Consensus 13 ~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~-is~~~a~~~~~~~~~ 91 (153)
.+|.+.|..... + ..++...++ ....++.+..=...-++.|+|-|+... -|.-|...|+ -+.+++..+...+..
T Consensus 154 a~p~l~G~~a~~--g-~~~~~~~~l-~~~~~~W~~~h~~~~ai~~~~Dy~~aG-~~~lpv~~G~~~t~~~~~~~~~~~~~ 228 (306)
T PRK13362 154 AMPPVVGYCAVT--G-QFDAGALIL-LLMFSLWQMPHSYAIAIFRFNDYAAAG-IPVLPVARGIAKTKLHIVLYILVFAL 228 (306)
T ss_pred HHHHHHHHHHHc--C-CCcHHHHHH-HHHHHHHHHHHHHHHHHHhHhhHHHCC-CeeeceecChHHHHHHHHHHHHHHHH
Confidence 466666654443 2 244443322 222233333322223334444444322 2356776665 233334444444444
Q ss_pred HHH
Q psy1910 92 AGL 94 (153)
Q Consensus 92 ~~~ 94 (153)
.++
T Consensus 229 ~s~ 231 (306)
T PRK13362 229 VTA 231 (306)
T ss_pred HHH
Confidence 443
No 119
>COG4125 Predicted membrane protein [Function unknown]
Probab=36.31 E-value=1.7e+02 Score=21.42 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=30.6
Q ss_pred HHHHHHHHhccccccccccCCCCC-CCccccCCCCHHHHHHHHHHHHHHHHHH-HHHHHH
Q psy1910 45 MRGAGCTINDLWDKDIDSKVSRTK-DRPLVNGSISTTDAIIFLAGQLGAGLLI-LVQLNL 102 (153)
Q Consensus 45 ~~~~~~~~Nd~~D~~~D~~~~r~~-~RPl~sG~is~~~a~~~~~~~~~~~~~~-~~~~~~ 102 (153)
...-+++||-.|+.-.|+.++|.+ .|. =+++..+|..+=..+.++.+-+ ++++|.
T Consensus 49 ~atvAm~WN~vyN~lFd~~~rr~~~~rT---~~vRv~HAv~FE~gliv~lvP~iAw~L~i 105 (149)
T COG4125 49 SATVAMIWNFVYNLLFDRAERRMGTRRT---LAVRVAHAVGFELGLIVILVPLIAWWLGI 105 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHhhHHHHhhHHHHHHHHH
Confidence 344455666666666666544432 222 2455667777766666666643 455554
No 120
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=36.06 E-value=1.4e+02 Score=20.15 Aligned_cols=18 Identities=17% Similarity=0.038 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1910 81 DAIIFLAGQLGAGLLILV 98 (153)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~ 98 (153)
.++..+++++.+++++++
T Consensus 13 ~vli~GIiLL~~ACIFAf 30 (91)
T PHA02680 13 GVLICGVLLLTAACVFAF 30 (91)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 366777788888888775
No 121
>PRK04032 hypothetical protein; Provisional
Probab=33.56 E-value=1.7e+02 Score=21.75 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=10.2
Q ss_pred cccccccCCCCCCCccccCCCC
Q psy1910 57 DKDIDSKVSRTKDRPLVNGSIS 78 (153)
Q Consensus 57 D~~~D~~~~r~~~RPl~sG~is 78 (153)
++.+|.-.+=+..||+-|=.=|
T Consensus 17 ~~piD~g~~~~dg~~iiSP~KT 38 (159)
T PRK04032 17 GTPIDFGKTFVDGRRILGDGKT 38 (159)
T ss_pred CccccCCCcCCCCCeeCCCCCc
Confidence 5666654222235666333333
No 122
>PF03300 Tenui_NS4: Tenuivirus non-structural protein NS4; InterPro: IPR004980 This is a non-structural protein found in members of the Tenuivirus family.
Probab=31.05 E-value=22 Score=28.35 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=18.5
Q ss_pred ccccCCCC---CCCccccCCCCHHHHHH
Q psy1910 60 IDSKVSRT---KDRPLVNGSISTTDAII 84 (153)
Q Consensus 60 ~D~~~~r~---~~RPl~sG~is~~~a~~ 84 (153)
.|..|+++ +.|||..|+++..+|..
T Consensus 27 ~~~~nkK~l~ls~rPLtkGr~tid~Aat 54 (283)
T PF03300_consen 27 KEEKNKKKLALSMRPLTKGRMTIDQAAT 54 (283)
T ss_pred HhhccchhhhcccCCcccceEEhhhhhH
Confidence 45554443 47999999999999754
No 123
>PHA00515 hypothetical protein
Probab=29.72 E-value=16 Score=21.32 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=18.7
Q ss_pred ccccccccCCCCCCCccccCCCCHHHH
Q psy1910 56 WDKDIDSKVSRTKDRPLVNGSISTTDA 82 (153)
Q Consensus 56 ~D~~~D~~~~r~~~RPl~sG~is~~~a 82 (153)
+..+.-+...||..|.-|-|++|.+|.
T Consensus 22 fskklpqairrtgqraspvgqvsrrew 48 (53)
T PHA00515 22 FSKKLPQAIRRTGQRASPVGQVSRREW 48 (53)
T ss_pred HHhHhHHHHHHhccccCccchhhhhhc
Confidence 344444444677888888899998873
No 124
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=28.83 E-value=63 Score=23.59 Aligned_cols=14 Identities=36% Similarity=0.439 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHH
Q psy1910 9 SWLLFWPCGWSISM 22 (153)
Q Consensus 9 ~~~~~~p~~~g~~~ 22 (153)
..++++|..+|..-
T Consensus 69 m~LfFVPagVGim~ 82 (141)
T PRK04125 69 IGFLFVPSGISVIN 82 (141)
T ss_pred HHHHHhhhHhHHHH
Confidence 46788999888653
No 125
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=28.58 E-value=2.4e+02 Score=23.13 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhcccc--cccccc-------------------CCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHH
Q psy1910 39 GLGAVIMRGAGCTINDLWD--KDIDSK-------------------VSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLIL 97 (153)
Q Consensus 39 ~~~~~~~~~~~~~~Nd~~D--~~~D~~-------------------~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~~~ 97 (153)
++...+..+.-|++.+..| ||+|-. +.| -+|-++|+-|....=-|+.-.|+-.++..+
T Consensus 99 ll~ll~lyAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r-~nrr~~s~lIald~kqW~Mst~lS~al~Va 177 (314)
T COG3965 99 LLALLCLYALINALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAWKLRR-LNRRLKSPLIALDTKQWLMSTCLSAALFVA 177 (314)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHh-hhccCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 3344567777888888888 555532 223 267777887776554455444444444444
Q ss_pred H
Q psy1910 98 V 98 (153)
Q Consensus 98 ~ 98 (153)
+
T Consensus 178 F 178 (314)
T COG3965 178 F 178 (314)
T ss_pred H
Confidence 3
No 126
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=27.44 E-value=3.3e+02 Score=22.01 Aligned_cols=9 Identities=44% Similarity=0.678 Sum_probs=5.2
Q ss_pred HHHHhhccc
Q psy1910 112 LLFVTLYPL 120 (153)
Q Consensus 112 ~~~~~~Ys~ 120 (153)
..+..+|.+
T Consensus 202 ~~f~~ly~~ 210 (303)
T COG1295 202 LGFFLLYRF 210 (303)
T ss_pred HHHHHHHHH
Confidence 345666764
No 127
>PF05173 DapB_C: Dihydrodipicolinate reductase, C-terminus; InterPro: IPR022663 This entry represents the C-terminal region of Dihydrodipicolinate reductase. Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 1YL6_B 1YL5_A 1YL7_C 1P9L_B 1C3V_B ....
Probab=27.32 E-value=47 Score=23.69 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcccccc-ccccCCCCCCCc
Q psy1910 44 IMRGAGCTINDLWDKD-IDSKVSRTKDRP 71 (153)
Q Consensus 44 ~~~~~~~~~Nd~~D~~-~D~~~~r~~~RP 71 (153)
+...++..+|+-||.| +++++++|++.|
T Consensus 8 l~~~aa~~l~~~~dieI~E~HH~~K~DaP 36 (132)
T PF05173_consen 8 LAKQAAKLLPNGYDIEIIESHHRQKKDAP 36 (132)
T ss_dssp HHHHHHHHTTTTSEEEEEEEE-TT-SSSS
T ss_pred HHHHHHHhcCCCCCEEEEEcccCCCCCCC
Confidence 4566777888878887 667777666665
No 128
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=25.41 E-value=1e+02 Score=24.44 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcccccc-ccccCCCCCCCc
Q psy1910 44 IMRGAGCTINDLWDKD-IDSKVSRTKDRP 71 (153)
Q Consensus 44 ~~~~~~~~~Nd~~D~~-~D~~~~r~~~RP 71 (153)
+...++..++| +|.| ++.++++|++-|
T Consensus 137 ~~~~aa~~l~~-~dieI~E~HH~~K~DaP 164 (266)
T TIGR00036 137 LLEKAAKYLGD-YDIEIIELHHRHKKDAP 164 (266)
T ss_pred HHHHHHHhccC-CCEEeeeeccCCCCCCC
Confidence 45566667788 5988 677777766666
No 129
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=25.32 E-value=3.4e+02 Score=21.43 Aligned_cols=35 Identities=11% Similarity=0.046 Sum_probs=18.9
Q ss_pred HHHHHHHHhccccccccccCCCCCCCccccCCCCH
Q psy1910 45 MRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSIST 79 (153)
Q Consensus 45 ~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~ 79 (153)
.-...-..||..-+=.-|.-.|+|-||-+|-.-|-
T Consensus 138 ~l~~~vw~~Di~Ayf~Gr~fGk~kl~p~iSP~KT~ 172 (265)
T COG0575 138 LLFLGVWAGDIGAYFVGRRFGKHKLAPKISPKKTW 172 (265)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCCCCCCcCCCCCch
Confidence 34445567787776666665544334444444333
No 130
>PF07613 DUF1576: Protein of unknown function (DUF1576); InterPro: IPR011470 This small family is found in several undescribed proteins. The alignment is distinguished by the frequent occurrence of conserved glycine and aromatic residues.
Probab=24.51 E-value=3.2e+02 Score=20.82 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=25.5
Q ss_pred HhhcccCccccchhhHHHH-hhhhHHHHHHHHHhcCCCC
Q psy1910 115 VTLYPLMKRVTHWAQLTLG-MTFNYGALMGYSAVTGCVN 152 (153)
Q Consensus 115 ~~~Ys~~Kr~~~~~~~~~g-~~~~~~~l~g~~a~~g~~~ 152 (153)
.++|+..||...-+.+..+ ++.++.|+.|.++.+..++
T Consensus 92 v~Lys~~~~~~~~~~il~aLFgT~LAPi~s~~~f~~~~~ 130 (183)
T PF07613_consen 92 VYLYSKLSKEPFSSYILIALFGTALAPIVSEFAFGLGLP 130 (183)
T ss_pred HHHHHHHcCCChHHHHHHHHHHhhHHHHHHHHHHhcCCc
Confidence 4667766666555555555 4569999999887666554
No 131
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=24.29 E-value=1.9e+02 Score=18.05 Aligned_cols=17 Identities=29% Similarity=0.132 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1910 32 LHTLALFGLGAVIMRGA 48 (153)
Q Consensus 32 ~~~~~l~~~~~~~~~~~ 48 (153)
|++++...+++.++...
T Consensus 33 ~w~~~wv~lts~~~~~~ 49 (66)
T PF11755_consen 33 WWQLAWVVLTSVCMAIV 49 (66)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666666544433
No 132
>PF07187 DUF1405: Protein of unknown function (DUF1405); InterPro: IPR009845 This family consists of several bacterial and related archaeal protein of around 180 residues in length. The function of this family is unknown.
Probab=23.95 E-value=3.1e+02 Score=20.45 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcccccccccc
Q psy1910 44 IMRGAGCTINDLWDKDIDSK 63 (153)
Q Consensus 44 ~~~~~~~~~Nd~~D~~~D~~ 63 (153)
.....=...||..|+-.+..
T Consensus 111 ~va~~W~~~ND~iDY~~g~~ 130 (163)
T PF07187_consen 111 AVAAAWYLHNDVIDYVFGQH 130 (163)
T ss_pred HHHHHHHHHhhHHHhccCcC
Confidence 34444567899999998886
No 133
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=23.67 E-value=2.7e+02 Score=19.72 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1910 79 TTDAIIFLAGQLGAGLLILVQLNLY 103 (153)
Q Consensus 79 ~~~a~~~~~~~~~~~~~~~~~~~~~ 103 (153)
.+-...++..+...|++.....||.
T Consensus 33 ~~~l~~lGall~~~gii~fvA~nW~ 57 (145)
T PF09925_consen 33 ARILLYLGALLLGLGIILFVAANWD 57 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777887776667775
No 134
>PF06374 NDUF_C2: NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); InterPro: IPR009423 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several NADH-ubiquinone oxidoreductase subunit b14.5b proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006120 mitochondrial electron transport, NADH to ubiquinone, 0005743 mitochondrial inner membrane
Probab=22.90 E-value=1.5e+02 Score=21.00 Aligned_cols=8 Identities=13% Similarity=0.131 Sum_probs=3.1
Q ss_pred cCccccch
Q psy1910 120 LMKRVTHW 127 (153)
Q Consensus 120 ~~Kr~~~~ 127 (153)
..+|++.+
T Consensus 44 ~~~rRP~~ 51 (117)
T PF06374_consen 44 AINRRPPL 51 (117)
T ss_pred HHhcCCch
Confidence 33344433
No 135
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=22.75 E-value=2.1e+02 Score=21.17 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccc---CccccchhhHHHHhhhhHHH
Q psy1910 83 IIFLAGQLGAGLLILVQLNLYTIILGST-SLLFVTLYPL---MKRVTHWAQLTLGMTFNYGA 140 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~Ys~---~Kr~~~~~~~~~g~~~~~~~ 140 (153)
..++..+...++...+-.+|.....+.+ +.+..+.... .|....+.+++.++..++..
T Consensus 106 ~~l~~~l~~~~fa~lfgg~~~~~~~a~i~g~~~~~~~~~~~r~~~~~~~~~~~aa~~~~~~a 167 (193)
T PF06738_consen 106 VILAAGLASAAFALLFGGSWIDMIVAFILGLLVGLLRQLLSRRRLNSFIQEFIAAFLASLLA 167 (193)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 3444444444544444445654444443 3333333333 33333345555555544433
No 136
>PRK01658 holin-like protein; Validated
Probab=22.73 E-value=1.2e+02 Score=21.34 Aligned_cols=49 Identities=10% Similarity=0.031 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCc-HHHHHHHHHHHHHHHHHHHHHhccccc
Q psy1910 9 SWLLFWPCGWSISMAAVPGCLPD-LHTLALFGLGAVIMRGAGCTINDLWDK 58 (153)
Q Consensus 9 ~~~~~~p~~~g~~~a~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~Nd~~D~ 58 (153)
..++++|..+|..--.+.= ..+ +...+...+++.+.-..+-..=|+..+
T Consensus 66 m~llFVPa~VGi~~~~~ll-~~~~~~il~~ivvsT~l~l~vtg~~~~~l~~ 115 (122)
T PRK01658 66 LPLFFIPSAVGVMNYGDFL-SSKGISLFLVVVISTFVVMIVTGYLTQLLAK 115 (122)
T ss_pred HHHHHHHhhhHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899988865332110 012 333444455555555555555555443
No 137
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=22.47 E-value=1.3e+02 Score=24.90 Aligned_cols=42 Identities=12% Similarity=0.301 Sum_probs=28.7
Q ss_pred CCCccccC-CCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q psy1910 68 KDRPLVNG-SISTTDAIIFLAGQLGAGLLILV--QLNLYTIILGS 109 (153)
Q Consensus 68 ~~RPl~sG-~is~~~a~~~~~~~~~~~~~~~~--~~~~~~~~i~~ 109 (153)
+--|.+.| +.+.++...+...+..+++...+ ..++...+++.
T Consensus 209 PMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~g~~g~~Y~v~a~ 253 (304)
T COG0109 209 PMLPVVKGERRTKRQILLYTLALAPVSLLLALLGYVGYLYLVVAT 253 (304)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 36688875 55788888888888888887776 34444444444
No 138
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=21.90 E-value=5.5e+02 Score=22.59 Aligned_cols=15 Identities=27% Similarity=0.539 Sum_probs=10.7
Q ss_pred HHHHHHHHHhccccc
Q psy1910 44 IMRGAGCTINDLWDK 58 (153)
Q Consensus 44 ~~~~~~~~~Nd~~D~ 58 (153)
+...++..-||+|.+
T Consensus 375 l~a~st~i~~Diy~~ 389 (549)
T TIGR02711 375 TLAGASAVSHDLYAN 389 (549)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345667778999875
No 139
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=21.23 E-value=2.9e+02 Score=23.56 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccccCCC
Q psy1910 35 LALFGLGAVIMRGAGCTINDLWDKDIDSKVSR 66 (153)
Q Consensus 35 ~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r 66 (153)
.+.+.+...+.-.....+.| .|-|+|...+|
T Consensus 428 i~i~~~~~l~~l~~~~llP~-~~~~~~~~~~~ 458 (468)
T TIGR00788 428 ILGHSLAPLLPLPLLHLLPR-LEDVIDTEGKR 458 (468)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CccccCccchh
Confidence 33444444444444557788 66566666443
No 140
>COG3152 Predicted membrane protein [Function unknown]
Probab=20.62 E-value=3.2e+02 Score=19.37 Aligned_cols=25 Identities=16% Similarity=0.293 Sum_probs=20.5
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHH
Q psy1910 73 VNGSISTTDAIIFLAGQLGAGLLIL 97 (153)
Q Consensus 73 ~sG~is~~~a~~~~~~~~~~~~~~~ 97 (153)
.+||++.+|=+....+...+.+++.
T Consensus 14 f~GR~~R~~fW~~~L~~~ii~~vl~ 38 (125)
T COG3152 14 FSGRIGRSEFWYVILFNLIIGVVLF 38 (125)
T ss_pred ccCccchHHHHHHHHHHHHHHHHHH
Confidence 4899999999888888888777554
No 141
>PF03311 Cornichon: Cornichon protein; InterPro: IPR003377 The drosophila cornichon protein (gene: cni) [] is required in the germline for dorsal-ventral signalling. The dorsal-ventral pattern formation involves a reorganisation of the microtubule network correlated with the movement of the oocyte nucleus, and depending on the initial correct establishment of the anterior-posterior axis via a signal from the oocyte produced by cornichon and gurken and received by torpedo protein in the follicle cells. The biochemical function of the cornichon protein is currently not known. It is a protein of 144 residues that seems to contain three transmembrane regions. ; GO: 0035556 intracellular signal transduction, 0016020 membrane
Probab=20.13 E-value=1.6e+02 Score=20.95 Aligned_cols=24 Identities=17% Similarity=-0.117 Sum_probs=15.7
Q ss_pred HHHHHHHHHhccccccccccCCCC
Q psy1910 44 IMRGAGCTINDLWDKDIDSKVSRT 67 (153)
Q Consensus 44 ~~~~~~~~~Nd~~D~~~D~~~~r~ 67 (153)
+.-...+-+=-+-|.|.|.+|+..
T Consensus 19 ll~~~vy~ii~l~DLe~D~iNp~d 42 (128)
T PF03311_consen 19 LLFIVVYFIICLSDLECDYINPID 42 (128)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHH
Confidence 344444444457799999998753
No 142
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=20.03 E-value=2.1e+02 Score=23.73 Aligned_cols=48 Identities=10% Similarity=0.032 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHH
Q psy1910 43 VIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILV 98 (153)
Q Consensus 43 ~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~ 98 (153)
.+...++..-||++.+-.++. ++ +.+--.+-..+..++..++++.++.
T Consensus 312 ~l~a~ss~~~~Di~~~~~~~~-~~-------s~~~~~~~~ri~~~v~~~i~~~la~ 359 (406)
T PF00474_consen 312 LLLAISSIFSRDIYKPFIKPN-SA-------SEKQLLRVSRIAIVVIGIIAILLAL 359 (406)
T ss_dssp HHHHHHHHHHHHCCCCCC-SS--S--------SSHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHhhhhhhhhHHhhhcccccc-cc-------chhhhhhccceeEEeeHHhHHHHHh
Confidence 344556667788876533222 11 1222233444555555555555554
Done!