Query psy1910
Match_columns 153
No_of_seqs 124 out of 1026
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 19:26:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qy9_A DHPR, dihydrodipicolina 20.1 54 0.0018 24.7 2.2 29 44-75 119-148 (243)
2 3qkc_B Geranyl diphosphate syn 17.9 3.2E+02 0.011 20.6 6.6 54 38-97 70-123 (273)
3 1fgl_B HIV-1 GAG protein; cycl 15.9 80 0.0027 15.5 1.5 18 61-79 1-18 (26)
4 3ukw_C Bimax1 peptide; arm rep 15.2 89 0.003 15.2 1.5 14 57-70 13-26 (28)
5 4f3y_A DHPR, dihydrodipicolina 15.0 1.4E+02 0.0046 22.8 3.5 28 44-71 140-168 (272)
6 1rh5_C Secbeta; protein transl 14.5 2E+02 0.0067 16.5 3.5 20 76-95 27-46 (53)
7 2li5_B Ubiquitin-like modifier 12.4 71 0.0024 16.2 0.7 11 53-63 20-30 (34)
8 3arc_E Cytochrome B559 subunit 10.4 1.5E+02 0.005 18.7 1.9 14 69-82 61-74 (83)
9 2ls2_A High affinity copper up 13.6 60 0.002 15.9 0.0 17 106-122 8-25 (26)
10 1co4_A AMT1, protein (activato 9.5 1.2E+02 0.0042 16.6 1.1 15 57-73 27-41 (42)
No 1
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=20.12 E-value=54 Score=24.69 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcccccc-ccccCCCCCCCccccC
Q psy1910 44 IMRGAGCTINDLWDKD-IDSKVSRTKDRPLVNG 75 (153)
Q Consensus 44 ~~~~~~~~~Nd~~D~~-~D~~~~r~~~RPl~sG 75 (153)
+..-++-.++| ||.| ++.++++|++-| ||
T Consensus 119 ~~~~aa~~l~~-~dieI~E~HH~~K~DaP--SG 148 (243)
T 3qy9_A 119 ILAAAVPLLDD-FDIELTEAHHNKKVDAP--SG 148 (243)
T ss_dssp HHHHHHHHTTT-SEEEEEEEECTTCCSSS--CH
T ss_pred HHHHHHHhcCC-CCEEEEEcCCCCCCCCC--CH
Confidence 45667778888 9998 677777766666 55
No 2
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=17.91 E-value=3.2e+02 Score=20.60 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHH
Q psy1910 38 FGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLIL 97 (153)
Q Consensus 38 ~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~~~ 97 (153)
...+.=++|.++-+-.|+.|.+. .| .||-+..+.....|+..+=.++..++-+.
T Consensus 70 ~A~aiEliH~aSLIHDDI~D~d~----RR--G~pt~h~~~G~~~AIlaGD~Ll~~Af~~l 123 (273)
T 3qkc_B 70 AAAAVHLMHVAAYTHENLPLTDG----PM--SKSEIQHKFDPNIELLTGDGIIPFGLELM 123 (273)
T ss_dssp HHHHHHHHHHHHHHHHSCCBTTB----CS--SSSCCCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCcc----CC--CCCCchhhcCHHHHHHHHHHHHHHHHHHH
Confidence 33455689999999999998753 22 57888888999999988877777776544
No 3
>1fgl_B HIV-1 GAG protein; cyclophilin, binding protein for cyclosporin A, AIDS, isomer peptide complex; 1.80A {Human immunodeficiency virus type 1}
Probab=15.88 E-value=80 Score=15.55 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=12.4
Q ss_pred cccCCCCCCCccccCCCCH
Q psy1910 61 DSKVSRTKDRPLVNGSIST 79 (153)
Q Consensus 61 D~~~~r~~~RPl~sG~is~ 79 (153)
|+.++.. -.|++.|.+..
T Consensus 1 Dr~Hp~~-agp~p~gq~R~ 18 (26)
T 1fgl_B 1 DRXHPVH-AGPIAPGQLRE 18 (26)
T ss_pred CCcCccc-CCCCCCCCccC
Confidence 6666654 58888888764
No 4
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=15.18 E-value=89 Score=15.18 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=7.7
Q ss_pred cccccccCCCCCCC
Q psy1910 57 DKDIDSKVSRTKDR 70 (153)
Q Consensus 57 D~~~D~~~~r~~~R 70 (153)
+.|.|..-+|+++|
T Consensus 13 ewdedeepprkrkr 26 (28)
T 3ukw_C 13 EWDEDEEPPRKRKR 26 (28)
T ss_dssp CCCGGGSCCSSCCC
T ss_pred ccccccCcchhhhc
Confidence 45566665565444
No 5
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=15.04 E-value=1.4e+02 Score=22.81 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcccccc-ccccCCCCCCCc
Q psy1910 44 IMRGAGCTINDLWDKD-IDSKVSRTKDRP 71 (153)
Q Consensus 44 ~~~~~~~~~Nd~~D~~-~D~~~~r~~~RP 71 (153)
+..-++-.+++-||.| ++.++++|++-|
T Consensus 140 ~~~~aa~~l~~~~diei~E~HH~~K~DaP 168 (272)
T 4f3y_A 140 LLEFAAKQFAQGYDIEIIEAHHRHKVDAP 168 (272)
T ss_dssp HHHHHHHHTSSSCEEEEEEEECTTCCSSS
T ss_pred HHHHHHHhcCcCCCEEEEEecCCCCCCCC
Confidence 4566777888778988 667776665555
No 6
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=14.53 E-value=2e+02 Score=16.49 Aligned_cols=20 Identities=5% Similarity=-0.046 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy1910 76 SISTTDAIIFLAGQLGAGLL 95 (153)
Q Consensus 76 ~is~~~a~~~~~~~~~~~~~ 95 (153)
+++|+.++..++++.+.-++
T Consensus 27 Ki~P~~Vl~~si~~i~~V~~ 46 (53)
T 1rh5_C 27 RVKPEHVIGVTVAFVIIEAI 46 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCeehhhhHHHHHHHHHH
Confidence 58899988887776665443
No 7
>2li5_B Ubiquitin-like modifier-activating enzyme ATG7; autophagy, protein transport; NMR {Saccharomyces cerevisiae}
Probab=12.44 E-value=71 Score=16.23 Aligned_cols=11 Identities=27% Similarity=0.516 Sum_probs=7.9
Q ss_pred hcccccccccc
Q psy1910 53 NDLWDKDIDSK 63 (153)
Q Consensus 53 Nd~~D~~~D~~ 63 (153)
||.++.|-|..
T Consensus 20 ndvfeweddes 30 (34)
T 2li5_B 20 NDVFEWEDDES 30 (34)
T ss_dssp GGGCCSSCTTS
T ss_pred Ccccccccccc
Confidence 88888876643
No 8
>3arc_E Cytochrome B559 subunit alpha; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_E* 3kzi_E* 3bz1_E* 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3prq_E* 3prr_E* 3a0b_E* 3a0h_E*
Probab=10.44 E-value=1.5e+02 Score=18.66 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=11.7
Q ss_pred CCccccCCCCHHHH
Q psy1910 69 DRPLVNGSISTTDA 82 (153)
Q Consensus 69 ~RPl~sG~is~~~a 82 (153)
+-|++++|.+.++-
T Consensus 61 ~~plv~dRf~~~~q 74 (83)
T 3arc_E 61 SIPLVTDRFEAKQQ 74 (83)
T ss_dssp SCCCCCCSTTHHHH
T ss_pred cCcceecccCHHHH
Confidence 67999999998764
No 9
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=13.64 E-value=60 Score=15.89 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=8.6
Q ss_pred HHHHHHH-HHHhhcccCc
Q psy1910 106 ILGSTSL-LFVTLYPLMK 122 (153)
Q Consensus 106 ~i~~~~~-~~~~~Ys~~K 122 (153)
+.+.+++ ++.+.|..+|
T Consensus 8 v~Sci~ifll~~~YE~Lk 25 (26)
T 2ls2_A 8 AGAFVAVFLLAMFYEGLK 25 (26)
Confidence 3344443 4556666555
No 10
>1co4_A AMT1, protein (activator of metallothionein 1); metal regulation, translation/regulation protein complex; NMR {Synthetic} SCOP: g.47.1.1
Probab=9.48 E-value=1.2e+02 Score=16.64 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=8.0
Q ss_pred cccccccCCCCCCCccc
Q psy1910 57 DKDIDSKVSRTKDRPLV 73 (153)
Q Consensus 57 D~~~D~~~~r~~~RPl~ 73 (153)
|+....+ |+|.||..
T Consensus 27 drpL~~i--r~kGRP~t 41 (42)
T 1co4_A 27 DRPLKIL--KPRGRPPT 41 (42)
T ss_dssp SSCEEEE--CSCCCCSC
T ss_pred CCcceec--CCCCCCCC
Confidence 4444444 44578764
Done!