Query psy1910
Match_columns 153
No_of_seqs 124 out of 1026
Neff 7.5
Searched_HMMs 13730
Date Fri Aug 16 19:26:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1910.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1910hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1diha2 d.81.1.3 (A:131-240) D 53.5 7.5 0.00054 24.3 3.8 28 44-71 9-37 (110)
2 d1rtra_ a.128.1.1 (A:) Farnesy 32.6 14 0.001 26.6 2.9 58 37-97 65-122 (290)
3 d1rqja_ a.128.1.1 (A:) Farnesy 21.2 72 0.0053 22.6 5.2 61 34-97 65-125 (299)
4 d1vm6a2 d.81.1.3 (A:97-182) Di 14.7 48 0.0035 19.4 2.3 27 46-75 14-41 (86)
5 d2r6gf1 e.70.1.1 (F:13-260) Ma 14.0 1.2E+02 0.0084 21.2 4.6 23 113-136 40-62 (248)
6 d1yl7a2 d.81.1.3 (A:106-214) D 11.9 70 0.0051 19.3 2.5 30 42-71 4-35 (109)
7 d1v74a_ d.243.1.1 (A:) Colicin 11.1 51 0.0037 20.3 1.5 13 69-81 2-14 (107)
8 d1r5ba2 b.44.1.1 (A:555-622) E 9.9 62 0.0045 17.8 1.6 14 58-71 43-56 (68)
9 d2axte1 f.23.38.1 (E:3-84) Cyt 9.0 84 0.0061 18.2 1.9 14 69-82 60-73 (82)
10 d1t95a1 a.5.8.1 (A:87-161) Hyp 7.9 22 0.0016 20.7 -1.2 14 63-77 32-45 (75)
No 1
>d1diha2 d.81.1.3 (A:131-240) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}
Probab=53.47 E-value=7.5 Score=24.30 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcccccc-ccccCCCCCCCc
Q psy1910 44 IMRGAGCTINDLWDKD-IDSKVSRTKDRP 71 (153)
Q Consensus 44 ~~~~~~~~~Nd~~D~~-~D~~~~r~~~RP 71 (153)
+..-++-.+|+++|.| +|.+++++.+.|
T Consensus 9 l~~~~a~~l~~~~dieI~E~HH~~K~DaP 37 (110)
T d1diha2 9 LLEKAAKVMGDYTDIEIIEAHHRHKVDAP 37 (110)
T ss_dssp HHHHHHHHHTTTSEEEEEEEECTTCCSSS
T ss_pred HHHHHHHhcccccChhhHHHHHhcCCCCC
Confidence 4566677889999998 677877766665
No 2
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=32.61 E-value=14 Score=26.63 Aligned_cols=58 Identities=14% Similarity=0.054 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHH
Q psy1910 37 LFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLIL 97 (153)
Q Consensus 37 l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~~~ 97 (153)
-...+.=++|.++-+-.|+.|.|-|.. .| .||-...+.....|...+-.+...+.-+.
T Consensus 65 ~~A~avEllH~asLIHDDI~d~D~~~~-RR--g~pt~~~~~g~~~Ail~Gd~l~~~a~~l~ 122 (290)
T d1rtra_ 65 KSAIALEMIHTYSLIHDDLPAMDNDDY-RR--GKLTNHKVYGEWTAILAGDALLTKAFELI 122 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTTCCSE-ET--TEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhhhhhhh-hh--cchhhHHHhhhhHHHHcCcchhHHHHHHH
Confidence 344455689999999999998887766 33 67888888889999888887777666554
No 3
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=21.17 E-value=72 Score=22.57 Aligned_cols=61 Identities=20% Similarity=0.113 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHH
Q psy1910 34 TLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLIL 97 (153)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~~~ 97 (153)
...-...+.=++|.++.+-.|+.|.|.|.. .| .+|-+..+.....|...+-.+...++-..
T Consensus 65 ~~~~~A~aiEllH~asLiHDDI~d~d~~~~-RR--G~pt~h~~~G~~~AIl~Gd~l~~~a~~~l 125 (299)
T d1rqja_ 65 TLDAPAAAVECIHAYSLIHDDLPAMDDDDL-RR--GLPTCHVKFGEANAILAGDALQTLAFSIL 125 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTTTCCCE-ET--TEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHccchhhhhhhc-cc--ccccceeeeCcchhhhhcchHHHHHHHHH
Confidence 344445566689999999999999887655 23 67777778888888888877777776554
No 4
>d1vm6a2 d.81.1.3 (A:97-182) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}
Probab=14.75 E-value=48 Score=19.43 Aligned_cols=27 Identities=26% Similarity=0.556 Sum_probs=15.3
Q ss_pred HHHHHHHhcccccc-ccccCCCCCCCccccC
Q psy1910 46 RGAGCTINDLWDKD-IDSKVSRTKDRPLVNG 75 (153)
Q Consensus 46 ~~~~~~~Nd~~D~~-~D~~~~r~~~RPl~sG 75 (153)
..++..++| +|.+ .|..++.+++.| ||
T Consensus 14 ~~~~~~l~~-~di~I~E~HH~~K~DaP--SG 41 (86)
T d1vm6a2 14 SELVKVLED-WDVEIVETHHRFKKDAP--SG 41 (86)
T ss_dssp HHHHHHTTT-SEEEEEEEECTTCCCSS--CH
T ss_pred HHHHHhCcc-cCEEEehhhhhcCCCcc--ch
Confidence 334455544 5777 566766655554 55
No 5
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=14.02 E-value=1.2e+02 Score=21.24 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=13.9
Q ss_pred HHHhhcccCccccchhhHHHHhhh
Q psy1910 113 LFVTLYPLMKRVTHWAQLTLGMTF 136 (153)
Q Consensus 113 ~~~~~Ys~~Kr~~~~~~~~~g~~~ 136 (153)
+..+.| .-||.-++.-+..|+.+
T Consensus 40 ~~~~vy-~s~r~~p~kyi~PG~~~ 62 (248)
T d2r6gf1 40 AGLYIF-ANRKAYAWRYVYPGMAG 62 (248)
T ss_dssp HHHHHH-SSSCCTTHHHHHHHHHH
T ss_pred heEEEE-EccCccceehhhhHHHH
Confidence 334444 37777777777777543
No 6
>d1yl7a2 d.81.1.3 (A:106-214) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=11.89 E-value=70 Score=19.34 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhccc-ccc-ccccCCCCCCCc
Q psy1910 42 AVIMRGAGCTINDLW-DKD-IDSKVSRTKDRP 71 (153)
Q Consensus 42 ~~~~~~~~~~~Nd~~-D~~-~D~~~~r~~~RP 71 (153)
+.++.-.+-...+++ |.| +|.++++|++-|
T Consensus 4 vnll~~l~~~aa~~~~dieI~E~HH~~K~DaP 35 (109)
T d1yl7a2 4 AVLSMHFAKQAARFFDSAEVIELHHPHKADAP 35 (109)
T ss_dssp HHHHHHHHHHHGGGCSEEEEEEEECTTCCEES
T ss_pred HHHHHHHHHHHHhhCCCcEEEEcccccCCCCC
Confidence 333444444445555 355 566666554444
No 7
>d1v74a_ d.243.1.1 (A:) Colicin D nuclease domain {Escherichia coli [TaxId: 562]}
Probab=11.09 E-value=51 Score=20.29 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=11.0
Q ss_pred CCccccCCCCHHH
Q psy1910 69 DRPLVNGSISTTD 81 (153)
Q Consensus 69 ~RPl~sG~is~~~ 81 (153)
+-||.||++|.++
T Consensus 2 ~~pLds~~ftrkq 14 (107)
T d1v74a_ 2 NDPLDSGRFSRKQ 14 (107)
T ss_dssp CCTTCBTTBCHHH
T ss_pred CCCccCccchHHH
Confidence 4589999999887
No 8
>d1r5ba2 b.44.1.1 (A:555-622) Eukaryotic peptide chain release factor ERF2, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=9.89 E-value=62 Score=17.79 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=7.1
Q ss_pred ccccccCCCCCCCc
Q psy1910 58 KDIDSKVSRTKDRP 71 (153)
Q Consensus 58 ~~~D~~~~r~~~RP 71 (153)
.++|+-.++.+.||
T Consensus 43 ~~~~ktg~~~k~~P 56 (68)
T d1r5ba2 43 HKLDKTNRKSKKPP 56 (68)
T ss_dssp CCCCSSCCCCSSCC
T ss_pred HHHhcCCCEeccCC
Confidence 34555444445555
No 9
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.05 E-value=84 Score=18.22 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=11.9
Q ss_pred CCccccCCCCHHHH
Q psy1910 69 DRPLVNGSISTTDA 82 (153)
Q Consensus 69 ~RPl~sG~is~~~a 82 (153)
+-|++++|.+.++-
T Consensus 60 ~~pli~~Rf~~~~q 73 (82)
T d2axte1 60 SIPLVTDRFEAKQQ 73 (82)
T ss_dssp SCCCCCCSSSHHHH
T ss_pred cCcccccccCHHHH
Confidence 67999999998874
No 10
>d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.94 E-value=22 Score=20.66 Aligned_cols=14 Identities=29% Similarity=0.273 Sum_probs=9.7
Q ss_pred cCCCCCCCccccCCC
Q psy1910 63 KVSRTKDRPLVNGSI 77 (153)
Q Consensus 63 ~~~r~~~RPl~sG~i 77 (153)
+|++| +||.|.++|
T Consensus 32 VnP~T-~~P~p~~rI 45 (75)
T d1t95a1 32 IDPRT-NAPHPPSRI 45 (75)
T ss_dssp EBTTT-TBCCCHHHH
T ss_pred cCCCC-CCCCCHHHH
Confidence 45666 788887665
Done!