RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1910
(153 letters)
>gnl|CDD|178405 PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltransferase.
Length = 289
Score = 227 bits (581), Expect = 5e-76
Identities = 93/152 (61%), Positives = 117/152 (76%)
Query: 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
RLDKPIG+WLL WPC WSI++AA PG LPDL LALFG GA+++RGAGCTINDL D+DI
Sbjct: 13 ARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKMLALFGCGALLLRGAGCTINDLLDRDI 72
Query: 61 DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
D KV RTK RP+ +G+++ + FL QL GL IL+QLN Y+ ILG++SLL V YPL
Sbjct: 73 DKKVERTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGASSLLLVFTYPL 132
Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
MKR T W Q LG+TFN+GAL+G++AV G ++
Sbjct: 133 MKRFTFWPQAFLGLTFNWGALLGWAAVKGSLD 164
>gnl|CDD|130539 TIGR01474, ubiA_proteo, 4-hydroxybenzoate polyprenyl transferase,
proteobacterial. This model represents a family of
integral membrane proteins that condenses
para-hydroxybenzoate with any of several
polyprenyldiphosphates. Heterologous expression studies
suggest that for, many but not all members, the activity
seen (e.g. octaprenyltransferase in E. coli) reflects
available host isoprenyl pools rather than enzyme
specificity. A fairly deep split by both clustering
(UPGMA) and phylogenetics (NJ tree) separates this group
(mostly Proteobacterial and mitochondrial), with several
characterized members, from another group (mostly
archaeal and Gram-positive bacterial) lacking
characterized members [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 281
Score = 199 bits (508), Expect = 4e-65
Identities = 85/149 (57%), Positives = 109/149 (73%)
Query: 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
MR DKPIG+ LL WPC WS+ +AA G +P L+ L LF +GA++MRGAGC IND+WD+D
Sbjct: 8 MRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYLLGLFTVGAILMRGAGCVINDIWDRDF 67
Query: 61 DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
D +V RTK RPL +G++S AI+FL QL L +L+QLN TI+LG SL V YP
Sbjct: 68 DPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGVASLALVATYPF 127
Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTG 149
MKR+T+W QL LG+ F +GALMG++AVTG
Sbjct: 128 MKRITYWPQLVLGLAFGWGALMGWAAVTG 156
>gnl|CDD|183808 PRK12878, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed.
Length = 314
Score = 180 bits (458), Expect = 5e-57
Identities = 76/151 (50%), Positives = 99/151 (65%), Gaps = 3/151 (1%)
Query: 2 RLDKPIGSWLLFWPCGWSISMAA---VPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDK 58
R D+PIG WLL WPC WS ++AA L L L LF +GA+ MRGAGCT ND+ D+
Sbjct: 38 RWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWHLFLFFVGAIAMRGAGCTYNDIVDR 97
Query: 59 DIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLY 118
DID+KV+RT+ RPL +G +S A +F+ Q GL +L+Q N + I LG SL V Y
Sbjct: 98 DIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGIASLAIVAAY 157
Query: 119 PLMKRVTHWAQLTLGMTFNYGALMGYSAVTG 149
P MKR+T W Q LG+ F++GALMG++A G
Sbjct: 158 PFMKRITWWPQFFLGLAFSWGALMGWAAHFG 188
>gnl|CDD|237228 PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed.
Length = 285
Score = 174 bits (444), Expect = 3e-55
Identities = 71/149 (47%), Positives = 99/149 (66%), Gaps = 1/149 (0%)
Query: 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
MRL KPIG L+F+P + + +A+ LPD+ L LF +G+V+MR AGC IND++D+ I
Sbjct: 14 MRLHKPIGILLVFFPTLFGLLLAS-HSLLPDISLLVLFIIGSVLMRSAGCIINDIFDRKI 72
Query: 61 DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
D V+RTK+RPL +G++S A+I L L L+IL+ LN TI L +++ + LYPL
Sbjct: 73 DKHVARTKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSFIAVILIVLYPL 132
Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTG 149
MKR +W QL LG TFN G LM ++AV
Sbjct: 133 MKRFFYWPQLFLGFTFNMGILMAFAAVQN 161
>gnl|CDD|237229 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed.
Length = 282
Score = 171 bits (435), Expect = 6e-54
Identities = 67/152 (44%), Positives = 91/152 (59%), Gaps = 2/152 (1%)
Query: 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
MRLDKPIG+ LL WP W++ +AA +PDL L +F LG +MR AGC IND D+D
Sbjct: 12 MRLDKPIGTLLLLWPTLWALWLAA--DGIPDLWVLVVFVLGVFLMRAAGCVINDYADRDF 69
Query: 61 DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
D V RTK+RPL +G++S +A+ + L+++ LN TI L +L +YP
Sbjct: 70 DGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSVAALALAWIYPF 129
Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
MKR TH Q+ LG F +G M ++AV G V
Sbjct: 130 MKRYTHLPQVVLGAAFGWGIPMAFAAVQGSVP 161
>gnl|CDD|237240 PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed.
Length = 290
Score = 145 bits (368), Expect = 8e-44
Identities = 55/148 (37%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Query: 2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDID 61
R DKP G +L P W++ +AA LP L + + LGA+ AGC +NDLWD+DID
Sbjct: 17 RWDKPAGRLILMIPALWAVFLAA--HGLPPLPLVGIIILGALATSAAGCVVNDLWDRDID 74
Query: 62 SKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLM 121
+V RT+ RPL + +S I+ L + LN + L ++ + LYPL
Sbjct: 75 PQVERTRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCVAAVPVIFLYPLA 134
Query: 122 KRVTHWAQLTLGMTFNYGALMGYSAVTG 149
KRV QL L + + + L+ +SAVTG
Sbjct: 135 KRVFPVPQLVLAIAWGFAVLISWSAVTG 162
>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related
prenyltransferases [Coenzyme metabolism].
Length = 289
Score = 130 bits (328), Expect = 6e-38
Identities = 59/149 (39%), Positives = 81/149 (54%), Gaps = 2/149 (1%)
Query: 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
+RLD+PI + LL P + +AA LP L L L L + R AG INDL D++I
Sbjct: 17 LRLDRPIFNLLLLLPALLGLLLAA--SGLPSLKLLLLAFLAFFLARSAGYVINDLADREI 74
Query: 61 DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
D RTK+RPL +G +S +A++ L GL + + LN +L +L+ YP
Sbjct: 75 DRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAALVLALAYPF 134
Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTG 149
+KR T QL LG+ F GAL G +AV G
Sbjct: 135 LKRFTFLPQLVLGLAFGLGALAGAAAVGG 163
>gnl|CDD|171787 PRK12873, ubiA, prenyltransferase; Reviewed.
Length = 294
Score = 92.0 bits (229), Expect = 3e-23
Identities = 55/156 (35%), Positives = 79/156 (50%), Gaps = 6/156 (3%)
Query: 1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
+R +KP G +L P GWS+ + P P L L L LG + + GAGC NDLWD+ I
Sbjct: 14 LRWNKPTGRLILLIPAGWSLWLT--PSAPPSLLLLLLIILGGLAVSGAGCIANDLWDRRI 71
Query: 61 DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQL----NLYTIILGSTSLLFVT 116
D KV RTK+RPL G IS A L L L +++ L + L +L +
Sbjct: 72 DRKVERTKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPPIL 131
Query: 117 LYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
+YP KR + Q L + + + L+ ++A G +N
Sbjct: 132 IYPSAKRWFAYPQAILALCWGFAVLIPWAAAEGSLN 167
>gnl|CDD|233429 TIGR01475, ubiA_other, putative 4-hydroxybenzoate
polyprenyltransferase. A fairly deep split separates
this polyprenyltransferase subfamily from the set of
mitochondrial and proteobacterial 4-hydroxybenzoate
polyprenyltransferases, described in TIGR01474.
Protoheme IX farnesyltransferase (heme O synthase)
(TIGR01473) is more distantly related. Because no
species appears to have both this protein and a member
of TIGR01474, it is likely that This model represents
4-hydroxybenzoate polyprenyltransferase, a critical
enzyme of ubiquinone biosynthesis, in the Archaea,
Gram-positive bacteria, Aquifex aeolicus, the
Chlamydias, etc [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 282
Score = 80.9 bits (200), Expect = 4e-19
Identities = 46/121 (38%), Positives = 59/121 (48%)
Query: 29 LPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAG 88
LP L TL L + AV R A N + D+ ID++ RTK+RPLV+G IS +A +
Sbjct: 32 LPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIIL 91
Query: 89 QLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVT 148
L L LN IL LL + +YP KR T LG T+ L G+ AV
Sbjct: 92 SLALFLSASYFLNPLAFILSPLVLLVLIIYPYTKRFTFLCHYVLGSTYGLAPLAGWVAVI 151
Query: 149 G 149
G
Sbjct: 152 G 152
>gnl|CDD|237283 PRK13106, ubiA, prenyltransferase; Reviewed.
Length = 300
Score = 69.8 bits (171), Expect = 5e-15
Identities = 40/120 (33%), Positives = 56/120 (46%)
Query: 30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQ 89
P + TL L L +R AG T ++L D +ID+K RTK+RPLV G+I ++A +
Sbjct: 46 PPISTLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKISEAKALITAG 105
Query: 90 LGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTG 149
L +N + ++L L YP MKR T +A L G AV G
Sbjct: 106 LILFFASAYLVNRWALLLSPIVALIAMSYPYMKRYTAFANYHLASIQGLAVFSGAVAVLG 165
>gnl|CDD|223187 COG0109, CyoE, Polyprenyltransferase (cytochrome oxidase assembly
factor) [Posttranslational modification, protein
turnover, chaperones].
Length = 304
Score = 68.8 bits (169), Expect = 1e-14
Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 3/133 (2%)
Query: 20 ISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSIST 79
M P + L L LG + G N D+DID+ + RT+ RPLV G IS
Sbjct: 39 AGMLLAPRGSINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLISP 98
Query: 80 TDAIIFLAGQLGAGLLIL-VQLNLYTIILGSTSLLF-VTLY-PLMKRVTHWAQLTLGMTF 136
+A+ F AG +L +NL +LG + F V +Y +KR T + G
Sbjct: 99 REALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIVIGGFAG 158
Query: 137 NYGALMGYSAVTG 149
L+G++AVTG
Sbjct: 159 AMPPLIGWAAVTG 171
>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family.
Length = 259
Score = 67.5 bits (165), Expect = 2e-14
Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 4/143 (2%)
Query: 10 WLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKD 69
L + A G L L L L L ++++ AG +ND +D +ID+ D
Sbjct: 1 LPLALLPVLAGLALAAGGVLDLLLLLLLL-LALLLLQAAGNVLNDYFDYEIDADNPNKPD 59
Query: 70 RPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL---MKRVTH 126
RPL +G IS +A++ L GLL+ + L ++LG LL LY +KR
Sbjct: 60 RPLPSGRISPREALLLGLALLLLGLLLALLLGPLLLLLGLLGLLLGLLYSPPLRLKRRPL 119
Query: 127 WAQLTLGMTFNYGALMGYSAVTG 149
+L +G+ F L+G AV G
Sbjct: 120 LGELVVGLAFGLLILLGAYAVGG 142
>gnl|CDD|235293 PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional.
Length = 296
Score = 67.5 bits (166), Expect = 4e-14
Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 9/136 (6%)
Query: 20 ISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSIST 79
M P +P L L L LG ++ GA +N+ D+DID+K+ RTK+RPLV G IS
Sbjct: 31 GGMLLAPPGVPPLLLLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISP 90
Query: 80 TDAIIFLAGQLGAGLLILVQL-NLYTIILGSTSLLF-VTLYPL-MKRVTHWAQLTLGMTF 136
+A+IF G L+L N L + F V +Y L +KR T + G
Sbjct: 91 REALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTLWLKRRTPQNIVIGGAA- 149
Query: 137 NYGA---LMGYSAVTG 149
GA L+G++AVTG
Sbjct: 150 --GAMPPLIGWAAVTG 163
>gnl|CDD|233428 TIGR01473, cyoE_ctaB, protoheme IX farnesyltransferase. This model
describes protoheme IX farnesyltransferase, also called
heme O synthase, an enzyme that creates an intermediate
in the biosynthesis of heme A. Prior to the description
of its enzymatic function, this protein was often called
a cytochrome o ubiquinol oxidase assembly factor
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 280
Score = 65.3 bits (160), Expect = 2e-13
Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 3/129 (2%)
Query: 24 AVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAI 83
A G L + L L LG + + N D+DID K+ RT++RPLV G IS +A+
Sbjct: 26 APGGALVNPPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREAL 85
Query: 84 IFLAGQLGAGLLIL-VQLNLYTIILGSTSLLF-VTLY-PLMKRVTHWAQLTLGMTFNYGA 140
F G+ IL +N +LG + F V +Y +KR T + G
Sbjct: 86 AFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVIGGFAGAVPP 145
Query: 141 LMGYSAVTG 149
L+G++AVTG
Sbjct: 146 LIGWAAVTG 154
>gnl|CDD|184001 PRK13362, PRK13362, protoheme IX farnesyltransferase; Provisional.
Length = 306
Score = 55.8 bits (135), Expect = 5e-10
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 36 ALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIF--LAGQLGAG 93
A+ GL V+ +GC +N+ D+DID+K+ RT++R V G IS +A+ F G G G
Sbjct: 52 AVIGLSLVV--ASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAGFG 109
Query: 94 LLILVQLNLYTIILGSTSLLFVTLYPL-MKRVTHWAQLTLGMTFNYGAL---MGYSAVTG 149
LL L + +++V +Y L +KR + + L ++ GA+ +GY AVTG
Sbjct: 110 LLAAFTNPLAALFAAFGYVVYVGVYSLYLKRNSVYGTLVGSLS---GAMPPVVGYCAVTG 166
>gnl|CDD|237247 PRK12886, ubiA, prenyltransferase; Reviewed.
Length = 291
Score = 50.1 bits (120), Expect = 5e-08
Identities = 37/121 (30%), Positives = 50/121 (41%)
Query: 29 LPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAG 88
LP L + V R A N L D +ID++ RT R + G IS AI+F+
Sbjct: 38 LPGASQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLISKGSAILFIVL 97
Query: 89 QLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVT 148
L LN + L +L F+ LY KR T A + LG L + A+
Sbjct: 98 SSLLMLFAAWFLNPLCLYLSPPALFFLLLYSYCKRFTALAHVVLGFCLALAPLGAWIAIR 157
Query: 149 G 149
G
Sbjct: 158 G 158
>gnl|CDD|237242 PRK12874, ubiA, prenyltransferase; Reviewed.
Length = 291
Score = 48.5 bits (116), Expect = 2e-07
Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 34 TLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAG 93
L L L AV R N L D+DID RT +RP V+G IS ++F+ L A
Sbjct: 48 LLILGILAAVSARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIV--LNAL 105
Query: 94 LLILVQ--LNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTG 149
+ I V +N L L+ + Y KR + A L LG++ + G AV G
Sbjct: 106 IFIGVSYFINPLAFKLSFPFLIVLGGYSYFKRFSSLAHLVLGLSLGLAPIAGVVAVLG 163
>gnl|CDD|237239 PRK12869, ubiA, protoheme IX farnesyltransferase; Reviewed.
Length = 279
Score = 47.0 bits (112), Expect = 7e-07
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 5/117 (4%)
Query: 40 LGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLI-LV 98
+G + G N ++DID +SRT RP G ++ +A+ + G + +
Sbjct: 43 IGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALGTALGFL 102
Query: 99 QLNLYT---IILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
L T I LG V +K T + G N AL GY++ TG ++
Sbjct: 103 LLGPLTALFIALGWFFYAVVYTI-WLKPRTWLNIVIGGFAGNAAALAGYASGTGSLD 158
>gnl|CDD|183814 PRK12888, ubiA, prenyltransferase; Reviewed.
Length = 284
Score = 46.3 bits (110), Expect = 1e-06
Identities = 33/115 (28%), Positives = 51/115 (44%)
Query: 35 LALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGL 94
L L + V R N + D++ID++ RT R LV G++S A L L
Sbjct: 41 LLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGALVALAVFL 100
Query: 95 LILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTG 149
LN + L ++ + +YP KR T++ LG+ G + + AVTG
Sbjct: 101 GAAALLNPLCLALAPLAVAPLVVYPYAKRFTNFPHAILGLAQAVGPVGAWIAVTG 155
>gnl|CDD|237244 PRK12876, ubiA, prenyltransferase; Reviewed.
Length = 300
Score = 45.5 bits (108), Expect = 2e-06
Identities = 33/114 (28%), Positives = 48/114 (42%)
Query: 34 TLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAG 93
T++L G R G +N + D ID K RT R L +S +++ L
Sbjct: 48 TISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLLSINFSMLLLTLCSFLF 107
Query: 94 LLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAV 147
L + LN L S L + +YP KRVT LG+ + LM + A+
Sbjct: 108 LSLCWLLNPLCFSLAVLSTLLMIIYPYTKRVTFLCHWILGLVYYLAILMNFFAI 161
>gnl|CDD|237251 PRK12895, ubiA, prenyltransferase; Reviewed.
Length = 286
Score = 44.8 bits (106), Expect = 3e-06
Identities = 32/108 (29%), Positives = 45/108 (41%)
Query: 40 LGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQ 99
+ AV R + +IN + D R KD LV+G I +AI F + +
Sbjct: 44 IAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAIFEICTFL 103
Query: 100 LNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAV 147
LN IL + + P +KR T W + +G G L GY AV
Sbjct: 104 LNRLVFILSPIVIFLFIIDPFLKRYTAWRHIYMGSIIGLGVLAGYLAV 151
>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed.
Length = 277
Score = 44.3 bits (105), Expect = 5e-06
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
Query: 27 GCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFL 86
G +P + TL L L + G TIND +D +ID K++R +RPL G++S A+ +
Sbjct: 31 GGIPPIKTLILIFLVVYLGCSGGNTINDYFDYEID-KINR-PNRPLPRGAMSRKAALYYS 88
Query: 87 AGQLGAGLLILVQLNLYTIILGSTSLLFVTLY-------PLMKRVTHWAQLTLGMTFNYG 139
GL + +N+ + + + + LY P + V A LT G T YG
Sbjct: 89 LLLFAVGLALAYLINIEAFLFALGAYVLMFLYAWKLKPLPFIGNVV-VALLT-GATPIYG 146
Query: 140 A-------LMGYSAV 147
A L GY A+
Sbjct: 147 AIAVGRIGLAGYLAI 161
>gnl|CDD|215415 PLN02776, PLN02776, prenyltransferase.
Length = 341
Score = 41.7 bits (98), Expect = 4e-05
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 31 DLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIF--LAG 88
DL L G ++ + T+N +++ DSK+ RT RPL +G IS A+ + + G
Sbjct: 27 DLPGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVG 86
Query: 89 QLGAGLLILVQLNLYTIILGSTSL-LFVTLYPLMKRVTHWAQLTLGMTFNYGA---LMGY 144
G LL + N+ T LG+ ++ L+ +Y +K++ H A +G GA LMG+
Sbjct: 87 AAGVALLAY-KTNMLTAGLGAGNILLYAFVYTPLKQI-HPANTWVGAVV--GAIPPLMGW 142
Query: 145 SAVTG 149
+A +G
Sbjct: 143 AAASG 147
>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate
synthase; Reviewed.
Length = 279
Score = 41.1 bits (97), Expect = 8e-05
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 47 GAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTII 106
G IND++D +ID K+++ +RP+ +G IS +A IF GL++ + +N+Y +
Sbjct: 51 AGGNVINDIYDIEID-KINK-PERPIPSGRISLKEAKIFSITLFIVGLILSIFINIYAFL 108
Query: 107 LGSTSLLFVTLY 118
+ + + + LY
Sbjct: 109 IALLNSILLYLY 120
>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed.
Length = 276
Score = 38.4 bits (90), Expect = 5e-04
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQ 89
T F + GAG IND +D++ID +++R DRP+ +G++S A+ F
Sbjct: 36 SPSLTGLAFAAVFLAT-GAGNAINDYFDREID-RINR-PDRPIPSGAVSPRGALAFSILL 92
Query: 90 LGAGLLILVQLNLYTIILGSTSLLFVTLY 118
AG+ + L + + + L + LY
Sbjct: 93 FAAGVALAFLLPPLCLAIALFNSLLLVLY 121
>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed.
Length = 279
Score = 34.2 bits (79), Expect = 0.016
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 13/132 (9%)
Query: 27 GCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFL 86
G LP L F L A G+ +ND +D ++D +++R DRP+ +G IS +A++
Sbjct: 32 GGLPLDEALLGF-LTAFFASGSANALNDYFDYEVD-RINRP-DRPIPSGRISRREALLLA 88
Query: 87 AGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLM-KRVTHWAQL----TLGMTFNYGAL 141
GL+ ++ ++ + LY K L GMTF +G +
Sbjct: 89 ILLFILGLIAAYLISPLAFLVVILVSVLGILYNWKLKEYGLIGNLYVAFLTGMTFIFGGI 148
Query: 142 MGYSAVTGCVNE 153
G +NE
Sbjct: 149 -----AVGELNE 155
>gnl|CDD|236195 PRK08238, PRK08238, hypothetical protein; Validated.
Length = 479
Score = 34.1 bits (79), Expect = 0.020
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 38 FGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLI 96
F L A A +NDL D + D R + RP +G++ + L AGL +
Sbjct: 235 FSLCA----SAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLAL 289
>gnl|CDD|237058 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate
phosphoribosyltransferase; Provisional.
Length = 295
Score = 33.7 bits (78), Expect = 0.025
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 52 INDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLI--LVQLNLYTIILG 108
+ND+ D + D ++RP+ +G +S + A I L A L + L+ L ++L
Sbjct: 65 VNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVLLV 123
>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional.
Length = 375
Score = 30.6 bits (69), Expect = 0.32
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 51 TINDLWDKDIDSKVSRTKDRPLVNGSISTTDAI----IFLAGQLGAGLLI 96
TIND +D++ID+ RP+ +G+IS + I + L G LG +
Sbjct: 141 TINDWYDREIDA--INEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTL 188
>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional.
Length = 508
Score = 29.8 bits (67), Expect = 0.61
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 10/41 (24%)
Query: 116 TLY-----PLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCV 151
T+Y P M+R+T W G+ + G L GY+A GCV
Sbjct: 105 TMYDDAWMPNMQRIT-WN----GIALHGGPLPGYAASHGCV 140
>gnl|CDD|193416 pfam12943, DUF3839, Protein of unknown function (DUF3839). This is
a family of uncharacterized proteins that are found in
Trichomonas.
Length = 242
Score = 28.5 bits (63), Expect = 1.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 57 DKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQL 90
DKD KV + +P + T DA++ LAGQ+
Sbjct: 156 DKDKRGKVWNEQIKPTYSELKKTIDALVVLAGQI 189
>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll
synthetase. This model describes a subfamily of a large
family of polyprenyltransferases (pfam01040) that also
includes 4-hydroxybenzoate octaprenyltransferase and
protoheme IX farnesyltransferase (heme O synthase).
Members of this family are found exclusively in
photosynthetic organisms, including a single copy in
Arabidopsis thaliana [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 283
Score = 28.2 bits (63), Expect = 1.9
Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 12/135 (8%)
Query: 1 MRLDKPIGSWLLFWP--CGWSISMAAVPGCLPDLHTLALFG--LGAVIMRGAGCTINDLW 56
+ L KP+ W CG +++ G P+ L L G + + G +IND +
Sbjct: 4 IELMKPVTWIPPIWACFCG-ALASGYERG-FPEHWWLMLLGMLMAGPLGTGFSQSINDYF 61
Query: 57 DKDIDSKVSRTKDRPLVNGSIS----TTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSL 112
D+D+D+ RP+ +G IS + ++ L L++ L + ++G
Sbjct: 62 DRDVDA--INEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLA 119
Query: 113 LFVTLYPLMKRVTHW 127
+ ++ P+ + W
Sbjct: 120 VIYSMPPIKLKRNGW 134
>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG. This model represents
the strictly cyanobacterial and plant-specific
chlorophyll synthase ChlG. ChlG is the enzyme (esterase)
which attaches the side chain moiety onto chlorophyllide
a. Both geranylgeranyl and phytyl pyrophosphates are
substrates to varying degrees in enzymes from different
sources. Thus, ChlG may act as the final or penultimate
step in chlorophyll biosynthesis (along with the
geranylgeranyl reductase, ChlP) [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 306
Score = 28.0 bits (62), Expect = 2.3
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 51 TINDLWDKDIDSKVSRTKDRPLVNGSISTTDAI-----IFLAGQLGAGLLIL----VQLN 101
TIND +D+DID+ RP+ +G+IS + I +F+AG A +L L N
Sbjct: 72 TINDFYDRDIDA--INEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPN 129
Query: 102 LYTIILGSTSLLFVTLYPLMK 122
++ + L + + F+ P +K
Sbjct: 130 VFVLALFGSFIAFIYSAPPLK 150
>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed.
Length = 308
Score = 27.2 bits (61), Expect = 3.1
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 52 INDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTS 111
+N L D +ID ++++ PL G S + L++ L + +I S
Sbjct: 72 LNQLTDIEID-RINK-PHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITVGIS 129
Query: 112 LLFVTLYPL----MKRVTHWAQL 130
LL T Y L +KR A L
Sbjct: 130 LLIGTAYSLPPIRLKRFPLLAAL 152
>gnl|CDD|221339 pfam11957, efThoc1, THO complex subunit 1 transcription elongation
factor. The THO complex plays a role in coupling
transcription elongation to mRNA export. It is composed
of subunits THP2, HPR1, THO2 and MFT1. The THO complex
is a nuclear complex that is required for transcription
elongation through genes containing tandemly repeated
DNA sequences. The THO complex is also part of the TREX
(TRanscription EXport) complex that is involved in
coupling transcription to export of mRNAs to the
cytoplasm.
Length = 494
Score = 27.4 bits (61), Expect = 3.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 52 INDLWDKDIDSKVSRTKDRP 71
+N LW+K IDS + R KD
Sbjct: 376 LNFLWEKKIDSGLDRLKDEE 395
>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase;
Reviewed.
Length = 314
Score = 26.4 bits (59), Expect = 5.9
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 51 TINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQL 100
T+ND +D+++D+ RP+ +G+IS + +A GL + L
Sbjct: 83 TLNDYFDREVDA--INEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLL 130
>gnl|CDD|198338 cd10305, GST_C_AIMP3, Glutathione S-transferase C-terminal-like,
alpha helical domain of Aminoacyl tRNA synthetase
complex-Interacting Multifunctional Protein 3.
Glutathione S-transferase (GST) C-terminal domain
family, Aminoacyl tRNA synthetase complex-Interacting
Multifunctional Protein (AIMP) 3 subfamily; AIMPs are
non-enzymatic cofactors that play critical roles in the
assembly and formation of a macromolecular multi-tRNA
synthetase protein complex that functions as a molecular
hub to coordinate protein synthesis. There are three
AIMPs, named AIMP1-3, which play diverse regulatory
roles. AIMP3, also called p18 or eukaryotic translation
elongation factor 1 epsilon-1 (EEF1E1), contains a
C-terminal domain with similarity to the C-terminal
alpha helical domain of GSTs. It specifically interacts
with methionyl-tRNA synthetase (MetRS) and is
translocated to the nucleus during DNA synthesis or in
response to DNA damage and oncogenic stress. In the
nucleus, it interacts with ATM and ATR, which are
upstream kinase regulators of p53. It appears to work
against DNA damage in cooperation with AIMP2, and
similar to AIMP2, AIMP3 is also a haploinsufficient
tumor suppressor. AIMP3 transgenic mice have shorter
lifespans than wild-type mice and they show
characteristics of progeria, suggesting that AIMP3 may
also be involved in cellular and organismal aging.
Length = 101
Score = 25.7 bits (57), Expect = 6.2
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 9/40 (22%)
Query: 96 ILVQLNLY----TIILGST-----SLLFVTLYPLMKRVTH 126
+L +LN Y T ++G +L+ L+P+MK ++
Sbjct: 30 LLKELNSYLQDRTYLVGHKLTLADVVLYYGLHPIMKDLSP 69
>gnl|CDD|211960 TIGR04237, seadorna_VP9, seadornavirus/coltivirus VP9 protein.
This model, broader than related pfam08978, describes
proteins VP9 in Coltivirus, and proteins with various
designations in the seadornavirus group: VP9 in Banna
virus, VP10 in Liao ning virus, and VP11 in Kadipiro
virus.
Length = 280
Score = 26.5 bits (58), Expect = 6.9
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 91 GAGLLILVQLNLY--TIILGSTSLLFVTLYPLMKRVTHWA 128
G+ L I + NL TI G ++LF T +A
Sbjct: 141 GSSLFITYEQNLIGSTIDTGKVNVLFQTSLTTASSTNSYA 180
>gnl|CDD|224491 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase
[Coenzyme metabolism].
Length = 303
Score = 26.1 bits (58), Expect = 8.1
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 37 LFGLGAVIMRGAGCTINDLWD----KDIDSKVSRTKDRPLVNGSIST----TDAIIFLAG 88
L + A++++ ND +D D + +V S+ + A+ LAG
Sbjct: 48 LALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAG 107
Query: 89 QLGAGLLILVQLNLYTIILGSTSLLFVTLY 118
G+++ + ++LG + LY
Sbjct: 108 LALLGVILAALSDWLVLLLGLLCIAAGILY 137
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.141 0.454
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,752,207
Number of extensions: 703623
Number of successful extensions: 950
Number of sequences better than 10.0: 1
Number of HSP's gapped: 926
Number of HSP's successfully gapped: 68
Length of query: 153
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 64
Effective length of database: 6,990,096
Effective search space: 447366144
Effective search space used: 447366144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (24.9 bits)