RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1910
         (153 letters)



>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
          {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
          Length = 287

 Score = 29.2 bits (64), Expect = 0.45
 Identities = 8/42 (19%), Positives = 18/42 (42%)

Query: 52 INDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAG 93
          I +  DK  +++++   +  +       +     L GQ G+G
Sbjct: 4  IVNFTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSG 45


>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase,
          HEL helix motif, transcription regulator; 3.20A
          {Streptococcus pneumoniae}
          Length = 253

 Score = 28.3 bits (62), Expect = 0.93
 Identities = 12/42 (28%), Positives = 15/42 (35%)

Query: 52 INDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAG 93
          I D  D +    ++R           S     I L GQ GAG
Sbjct: 3  IQDYTDSEFKHALARNLRSLTRGKKSSKQPIAILLGGQSGAG 44


>2fmd_A Lectin, agglutinin, BMA; legume lectin, beta sandwich,
           protein-carbohydrate complex, sugar binding protein;
           HET: MAN; 1.90A {Bowringia mildbraedii}
          Length = 240

 Score = 26.3 bits (57), Expect = 4.9
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 108 GSTSLLFVTL-YPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVNE 153
            ++  L V   YP    V     + L         +G+SA TG   +
Sbjct: 175 SASKRLSVVSSYPNSSPVVVSFDVELNNVBPBWVRVGFSATTGQYTQ 221


>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C
           membrane protein, baculovirus expression system,
           glycoprote membrane; 10.00A {Rattus norvegicus}
          Length = 340

 Score = 25.9 bits (57), Expect = 6.2
 Identities = 26/121 (21%), Positives = 40/121 (33%), Gaps = 35/121 (28%)

Query: 10  WLLFWPCGWSISMAAVPGCLP-DLHTLAL-FGLGAVIMRGA-----GCTINDLWDKDIDS 62
             +    G +I+       LP D+  ++L FGL    M        G  IN         
Sbjct: 64  IFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHIN--------- 114

Query: 63  KVSRTKDRP------LVNGSISTTDAIIFLAGQL-----GAGLLILVQLNLYTIILGSTS 111
                   P      +    IS   ++ ++  Q      GAG+L LV        LG T+
Sbjct: 115 --------PAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTT 166

Query: 112 L 112
           +
Sbjct: 167 V 167


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.0 bits (56), Expect = 6.6
 Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 13/112 (11%)

Query: 52  INDLW---DKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLIL--VQ----LNL 102
           +  L    D +  S+   + +  L   SI      +  +      LL+L  VQ     N 
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 103 YTI---ILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSA-VTGC 150
           + +   IL +T    VT +      TH +     MT     +         C
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313


>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane
           helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1
           PDB: 1h6i_A 1fqy_A 1ih5_A
          Length = 271

 Score = 25.4 bits (56), Expect = 8.6
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 5/46 (10%)

Query: 72  LVNGSISTTDAIIFLAGQL-----GAGLLILVQLNLYTIILGSTSL 112
           L++  IS   AI+++  Q         +L  +  +L    LG  +L
Sbjct: 86  LLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNAL 131


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.141    0.454 

Gapped
Lambda     K      H
   0.267   0.0537    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,305,949
Number of extensions: 123105
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 12
Length of query: 153
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 68
Effective length of database: 4,328,508
Effective search space: 294338544
Effective search space used: 294338544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.6 bits)