RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1910
         (153 letters)



>d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 397

 Score = 26.1 bits (57), Expect = 2.0
 Identities = 7/93 (7%), Positives = 23/93 (24%), Gaps = 14/93 (15%)

Query: 7   IGSWLLFWPCGWSISMAAVPGCLPDLH---TLALFGLGAVI-----------MRGAGCTI 52
           +G     +       + +       +      A+  + A+             R      
Sbjct: 223 LGGVFEVFALNVPPGLGSHIQWDRRIDGRIAQAMMSIQAIKGVEIGLGFEAARRFGSQVH 282

Query: 53  NDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIF 85
           +++   +       + +     G I+    I+ 
Sbjct: 283 DEIGWSEGKGYFRHSNNLGGTEGGITNGMPIVV 315


>d1tyeb1 b.1.15.1 (B:58-106,B:355-440) Hybrid domain of integrin
          beta {Human (Homo sapiens) [TaxId: 9606]}
          Length = 135

 Score = 24.5 bits (53), Expect = 4.2
 Identities = 6/29 (20%), Positives = 13/29 (44%)

Query: 61 DSKVSRTKDRPLVNGSISTTDAIIFLAGQ 89
           S+    +DRPL +     +  +  ++ Q
Sbjct: 1  VSEARVLEDRPLSDKGSGDSSQVTQVSPQ 29


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.141    0.454 

Gapped
Lambda     K      H
   0.267   0.0538    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 555,591
Number of extensions: 21742
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 3
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.1 bits)