BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1911
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 101/156 (64%), Gaps = 5/156 (3%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP +FDARE+WP+CP+++ I DQ +CGSCWA AISDR+CI +N + + ++SA+ ++
Sbjct: 64 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 123
Query: 247 ACTPNCW--GCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGPLQNCT 304
C + GCNGG+P AW FW G+V+GG Y S GC+PY++ PCEHHV G CT
Sbjct: 124 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 183
Query: 305 LLGKLKTPECKQNCYNPSYESTYRFDLKKGKKAHMV 340
G+ TP+C + C P Y TY+ D G ++ V
Sbjct: 184 --GEGDTPKCSKIC-EPGYSPTYKQDKHYGYNSYSV 216
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 75/108 (69%), Gaps = 2/108 (1%)
Query: 54 YLPTSIPLSHYFKKAHMVPRC--NAMRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDS 111
Y PT HY ++ V + M +IY++GP+ FSVY+DFL YKSGVYQH G+
Sbjct: 199 YSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEM 258
Query: 112 IGLHAVRVLGWGVENDIPYWLVANSWNDHWGDHGTFKILRGENEADIE 159
+G HA+R+LGWGVEN PYWLVANSWN WGD+G FKILRG++ IE
Sbjct: 259 MGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIE 306
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 101/156 (64%), Gaps = 5/156 (3%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP +FDARE+WP+CP+++ I DQ +CGSCWA AISDR+CI +N + + ++SA+ ++
Sbjct: 3 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 62
Query: 247 ACTPNCW--GCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGPLQNCT 304
C + GCNGG+P AW FW G+V+GG Y S GC+PY++ PCEHHV G CT
Sbjct: 63 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 122
Query: 305 LLGKLKTPECKQNCYNPSYESTYRFDLKKGKKAHMV 340
G+ TP+C + C P Y TY+ D G ++ V
Sbjct: 123 --GEGDTPKCSKIC-EPGYSPTYKQDKHYGYNSYSV 155
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 75/108 (69%), Gaps = 2/108 (1%)
Query: 54 YLPTSIPLSHYFKKAHMVPRC--NAMRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDS 111
Y PT HY ++ V + M +IY++GP+ FSVY+DFL YKSGVYQH G+
Sbjct: 138 YSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEM 197
Query: 112 IGLHAVRVLGWGVENDIPYWLVANSWNDHWGDHGTFKILRGENEADIE 159
+G HA+R+LGWGVEN PYWLVANSWN WGD+G FKILRG++ IE
Sbjct: 198 MGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIE 245
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 101/156 (64%), Gaps = 5/156 (3%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP +FDARE+WP+CP+++ I DQ +CGSCWA AISDR+CI +N + + ++SA+ ++
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 247 ACTPNCW--GCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGPLQNCT 304
C + GCNGG+P AW FW G+V+GG Y S GC+PY++ PCEHHV G CT
Sbjct: 61 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 305 LLGKLKTPECKQNCYNPSYESTYRFDLKKGKKAHMV 340
G+ TP+C + C P Y TY+ D G ++ V
Sbjct: 121 --GEGDTPKCSKIC-EPGYSPTYKQDKHYGYNSYSV 153
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 75/108 (69%), Gaps = 2/108 (1%)
Query: 54 YLPTSIPLSHYFKKAHMVPRC--NAMRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDS 111
Y PT HY ++ V + M +IY++GP+ FSVY+DFL YKSGVYQH G+
Sbjct: 136 YSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEM 195
Query: 112 IGLHAVRVLGWGVENDIPYWLVANSWNDHWGDHGTFKILRGENEADIE 159
+G HA+R+LGWGVEN PYWLVANSWN WGD+G FKILRG++ IE
Sbjct: 196 MGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIE 243
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 101/156 (64%), Gaps = 5/156 (3%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP +FDARE+WP+CP+++ I DQ +CGSCWA AISDR+CI +N + + ++SA+ ++
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 247 ACTPNCW--GCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGPLQNCT 304
C + GCNGG+P AW FW G+V+GG Y S GC+PY++ PCEHHV G CT
Sbjct: 62 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 121
Query: 305 LLGKLKTPECKQNCYNPSYESTYRFDLKKGKKAHMV 340
G+ TP+C + C P Y TY+ D G ++ V
Sbjct: 122 --GEGDTPKCSKIC-EPGYSPTYKQDKHYGYNSYSV 154
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 75/108 (69%), Gaps = 2/108 (1%)
Query: 54 YLPTSIPLSHYFKKAHMVPRC--NAMRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDS 111
Y PT HY ++ V + M +IY++GP+ FSVY+DFL YKSGVYQH G+
Sbjct: 137 YSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEM 196
Query: 112 IGLHAVRVLGWGVENDIPYWLVANSWNDHWGDHGTFKILRGENEADIE 159
+G HA+R+LGWGVEN PYWLVANSWN WGD+G FKILRG++ IE
Sbjct: 197 MGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIE 244
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 99/156 (63%), Gaps = 5/156 (3%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP +FDARE+WP+CP+++ I DQ +CGS WA AISDR+CI +N + + ++SA+ ++
Sbjct: 7 LPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 66
Query: 247 ACTPNCW--GCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGPLQNCT 304
C + GCNGG+P AW FW G+V+GG Y S GC+PY++ PCE HV G CT
Sbjct: 67 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCT 126
Query: 305 LLGKLKTPECKQNCYNPSYESTYRFDLKKGKKAHMV 340
G+ TP+C + C P Y TY+ D G ++ V
Sbjct: 127 --GEGDTPKCSKIC-EPGYSPTYKQDKHYGYNSYSV 159
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 75/108 (69%), Gaps = 2/108 (1%)
Query: 54 YLPTSIPLSHYFKKAHMVPRC--NAMRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDS 111
Y PT HY ++ V + M +IY++GP+ FSVY+DFL YKSGVYQH G+
Sbjct: 142 YSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEM 201
Query: 112 IGLHAVRVLGWGVENDIPYWLVANSWNDHWGDHGTFKILRGENEADIE 159
+G HA+R+LGWGVEN PYWLVANSWN WGD+G FKILRG++ IE
Sbjct: 202 MGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIE 249
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 97/156 (62%), Gaps = 5/156 (3%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP +FDARE+W CP++ I DQ +CGSCWA A+SDR+CI +NG ++SA+ ++
Sbjct: 7 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 66
Query: 247 ACTP-NCW-GCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGPLQNCT 304
C C GCNGG+P AW FW G+V+GG YNS GC PYT+ PCEHHV G CT
Sbjct: 67 TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCT 126
Query: 305 LLGKLKTPECKQNCYNPSYESTYRFDLKKGKKAHMV 340
G+ TP+C + C Y ++Y+ D G ++ V
Sbjct: 127 --GEGDTPKCNKMC-EAGYSTSYKEDKHYGYTSYSV 159
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 67/83 (80%)
Query: 77 MRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANS 136
M +IY++GP+ F+V++DFL YKSGVY+H GD +G HA+R+LGWG+EN +PYWLVANS
Sbjct: 167 MAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANS 226
Query: 137 WNDHWGDHGTFKILRGENEADIE 159
WN WGD+G FKILRGEN IE
Sbjct: 227 WNADWGDNGFFKILRGENHCGIE 249
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 97/156 (62%), Gaps = 5/156 (3%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP +FDARE+W CP++ I DQ +CGSCWA A+SDR+CI +NG ++SA+ ++
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 247 ACTP-NCW-GCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGPLQNCT 304
C C GCNGG+P AW FW G+V+GG YNS GC PYT+ PCEHHV G CT
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCT 120
Query: 305 LLGKLKTPECKQNCYNPSYESTYRFDLKKGKKAHMV 340
G+ TP+C + C Y ++Y+ D G ++ V
Sbjct: 121 --GEGDTPKCNKMC-EAGYSTSYKEDKHYGYTSYSV 153
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 67/83 (80%)
Query: 77 MRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANS 136
M +IY++GP+ F+V++DFL YKSGVY+H GD +G HA+R+LGWG+EN +PYWLVANS
Sbjct: 161 MAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANS 220
Query: 137 WNDHWGDHGTFKILRGENEADIE 159
WN WGD+G FKILRGEN IE
Sbjct: 221 WNADWGDNGFFKILRGENHCGIE 243
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 5/166 (3%)
Query: 177 ETMGCQNAKGLPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYF 236
E +G LP +FDARE+W CP++ I DQ +CGS WA A+SDR+CI +NG
Sbjct: 53 ERVGFSEDINLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRV 112
Query: 237 TGQISAQHIVACTP-NCW-GCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEH 294
++SA+ ++ C C GCNGG+P AW FW G+V+GG YNS GC PYT+ PCEH
Sbjct: 113 NVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEH 172
Query: 295 HVQGPLQNCTLLGKLKTPECKQNCYNPSYESTYRFDLKKGKKAHMV 340
HV G CT G+ TP+C + C Y ++Y+ D G ++ V
Sbjct: 173 HVNGARPPCT--GEGDTPKCNKMC-EAGYSTSYKEDKHYGYTSYSV 215
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 67/83 (80%)
Query: 77 MRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANS 136
M +IY++GP+ F+V++DFL YKSGVY+H GD +G HA+R+LGWG+EN +PYWLVANS
Sbjct: 223 MAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANS 282
Query: 137 WNDHWGDHGTFKILRGENEADIE 159
WN WGD+G FKILRGEN IE
Sbjct: 283 WNADWGDNGFFKILRGENHCGIE 305
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 98/156 (62%), Gaps = 5/156 (3%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP +FDARE+WP CP+++ I DQ +CGSCWA AISDR+CI SNG ++SA+ ++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 247 A--CTPNCWGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGPLQNCT 304
GCNGG+P AW FW G+V+GG YNS GC+PY++ PCEHHV G CT
Sbjct: 61 TCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 305 LLGKLKTPECKQNCYNPSYESTYRFDLKKGKKAHMV 340
G+ TP+C + C P Y +Y+ D G ++ V
Sbjct: 121 --GEGDTPKCSKTC-EPGYSPSYKEDKHFGCSSYSV 153
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 65/83 (78%)
Query: 77 MRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANS 136
M +IY++GP+ FSVY+DFL YKSGVYQH G+ +G HA+R+LGWGVEN PYWLV NS
Sbjct: 161 MAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVGNS 220
Query: 137 WNDHWGDHGTFKILRGENEADIE 159
WN WGD+G FKILRG++ IE
Sbjct: 221 WNTDWGDNGFFKILRGQDHCGIE 243
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 94/156 (60%), Gaps = 5/156 (3%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP +FDARE+WP CP+++ I DQ +CGSCWA AISDR+CI SNG ++SA+ ++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 247 ACTPNCWGCNGGW--PQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGPLQNCT 304
C G P AW FW G+V+GG YNS GC+PY++ PCEHHV G CT
Sbjct: 61 TCCGGECGDGCNGGEPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 305 LLGKLKTPECKQNCYNPSYESTYRFDLKKGKKAHMV 340
G+ TP+C + C P Y +Y+ D G ++ V
Sbjct: 121 --GEGDTPKCSKTC-EPGYSPSYKEDKHFGCSSYSV 153
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/83 (65%), Positives = 66/83 (79%)
Query: 77 MRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANS 136
M +IY++GP+ FSVY+DFL YKSGVYQH G+ +G HA+R+LGWGVEN PYWLVANS
Sbjct: 161 MAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVANS 220
Query: 137 WNDHWGDHGTFKILRGENEADIE 159
WN WGD+G FKILRG++ IE
Sbjct: 221 WNTDWGDNGFFKILRGQDHCGIE 243
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 87/155 (56%), Gaps = 3/155 (1%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
+P +FD+R+KWP C S+ I DQS CGSCWA A+SDR CI S G ++SA ++
Sbjct: 3 IPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLL 62
Query: 247 ACTPNC-WGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGPLQNCTL 305
+C +C GC GG AW +W G+VTG + GC+PY CEHH +G C
Sbjct: 63 SCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGS 122
Query: 306 LGKLKTPECKQNCYNPSYESTYRFDLKKGKKAHMV 340
KTP CKQ C Y++ Y D +GK ++ V
Sbjct: 123 K-IYKTPRCKQTC-QKKYKTPYTQDKHRGKSSYNV 155
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 67/83 (80%)
Query: 77 MRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANS 136
++I ++GP+ A F+VY DFL YKSG+Y+H G+++G HA+R++GWGVEN PYWL+ANS
Sbjct: 163 QKEIMKYGPVEAGFTVYEDFLNYKSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIANS 222
Query: 137 WNDHWGDHGTFKILRGENEADIE 159
WN+ WG++G F+I+RG +E IE
Sbjct: 223 WNEDWGENGYFRIVRGRDECSIE 245
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 75/108 (69%), Gaps = 2/108 (1%)
Query: 54 YLPTSIPLSHYFKKAHMVPRC--NAMRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDS 111
Y PT HY ++ V + M +IY++GP+ FSVY+DFL YKSGVYQH G+
Sbjct: 87 YSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEM 146
Query: 112 IGLHAVRVLGWGVENDIPYWLVANSWNDHWGDHGTFKILRGENEADIE 159
+G HA+R+LGWGVEN PYWLVANSWN WGD+G FKILRG++ IE
Sbjct: 147 MGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIE 194
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 62/104 (59%), Gaps = 5/104 (4%)
Query: 239 QISAQHIVACTPNCWG--CNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHV 296
++SA+ ++ C + G CNGG+P AW FW G+V+GG Y S GC+PY++ PCEHHV
Sbjct: 4 EVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHV 63
Query: 297 QGPLQNCTLLGKLKTPECKQNCYNPSYESTYRFDLKKGKKAHMV 340
G CT G+ TP+C + C P Y TY+ D G ++ V
Sbjct: 64 NGSRPPCT--GEGDTPKCSKIC-EPGYSPTYKQDKHYGYNSYSV 104
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 65/83 (78%)
Query: 77 MRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANS 136
M +IY++GP+ FSVY+DFL YKSGVYQH G+ +G HA+R+LGWGVEN PYWLV NS
Sbjct: 113 MAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVGNS 172
Query: 137 WNDHWGDHGTFKILRGENEADIE 159
WN WGD+G FKILRG++ IE
Sbjct: 173 WNTDWGDNGFFKILRGQDHCGIE 195
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 259 WPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGPLQNCTLLGKLKTPECKQNC 318
+P AW FW G+V+GG YNS GC+PY++ PCEHHV G CT G+ TP+C + C
Sbjct: 27 FPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT--GEGDTPKCNKTC 84
Query: 319 YNPSYESTYRFDLKKGKKAHMV 340
P Y +Y+ D G ++ V
Sbjct: 85 -EPGYSPSYKEDKHFGCSSYSV 105
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 78/139 (56%), Gaps = 12/139 (8%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP +FD+ E WP CP++ IADQS CGSCWAV+ A+A+SDR C G ISA ++
Sbjct: 72 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTM-GGVQDVHISAGDLL 130
Query: 247 ACTPNCW-GCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGP--LQNC 303
AC +C GCNGG P AW ++ G+V+ DY CQPY C HH + C
Sbjct: 131 ACCSDCGDGCNGGDPDRAWAYFSSTGLVS--DY-----CQPYPFPHCSHHSKSKNGYPPC 183
Query: 304 TLLGKLKTPECKQNCYNPS 322
+ TP+C C +P+
Sbjct: 184 SQF-NFDTPKCDYTCDDPT 201
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 54/85 (63%)
Query: 77 MRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANS 136
MR+++ GP F VY DF+ Y SGVY H G +G HAVR++GWG N +PYW +ANS
Sbjct: 222 MRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANS 281
Query: 137 WNDHWGDHGTFKILRGENEADIEMG 161
WN WG G F I RG +E IE G
Sbjct: 282 WNTEWGMDGYFLIRRGSSECGIEDG 306
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 78/139 (56%), Gaps = 12/139 (8%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP +FD+ E WP CP++ IADQS CGSCWAV+ A+A+SDR C G ISA ++
Sbjct: 71 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTM-GGVQDVHISAGDLL 129
Query: 247 ACTPNCW-GCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGP--LQNC 303
AC +C GCNGG P AW ++ G+V+ DY CQPY C HH + C
Sbjct: 130 ACCSDCGDGCNGGDPDRAWAYFSSTGLVS--DY-----CQPYPFPHCSHHSKSKNGYPPC 182
Query: 304 TLLGKLKTPECKQNCYNPS 322
+ TP+C C +P+
Sbjct: 183 SQF-NFDTPKCNYTCDDPT 200
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 54/85 (63%)
Query: 77 MRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANS 136
MR+++ GP F VY DF+ Y SGVY H G +G HAVR++GWG N +PYW +ANS
Sbjct: 221 MRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANS 280
Query: 137 WNDHWGDHGTFKILRGENEADIEMG 161
WN WG G F I RG +E IE G
Sbjct: 281 WNTEWGMDGYFLIRRGSSECGIEDG 305
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 78/139 (56%), Gaps = 12/139 (8%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP +FD+ E WP CP++ IADQS CGSCWAV+ A+A+SDR C G ISA ++
Sbjct: 94 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTM-GGVQDVHISAGDLL 152
Query: 247 ACTPNCW-GCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGP--LQNC 303
AC +C GCNGG P AW ++ G+V+ DY CQPY C HH + C
Sbjct: 153 ACCSDCGDGCNGGDPDRAWAYFSSTGLVS--DY-----CQPYPFPHCSHHSKSKNGYPPC 205
Query: 304 TLLGKLKTPECKQNCYNPS 322
+ TP+C C +P+
Sbjct: 206 SQF-NFDTPKCNYTCDDPT 223
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 54/85 (63%)
Query: 77 MRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANS 136
MR+++ GP F VY DF+ Y SGVY H G +G HAVR++GWG N +PYW +ANS
Sbjct: 244 MRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANS 303
Query: 137 WNDHWGDHGTFKILRGENEADIEMG 161
WN WG G F I RG +E IE G
Sbjct: 304 WNTEWGMDGYFLIRRGSSECGIEDG 328
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 37/48 (77%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNG 234
LP +FDARE+WP CP+++ I DQ +CGSCWA AISDR+CI SNG
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNG 48
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 71.6 bits (174), Expect = 5e-13, Method: Composition-based stats.
Identities = 28/47 (59%), Positives = 37/47 (78%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASN 233
LP +FDARE+WP+CP+++ I DQ +CGSCWA AISDR+CI +N
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTN 47
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Query: 79 QIYEHGPLVAIFSVYADFLQYKSGVYQHN-FGD-----SIGLHAVRVLGWGVEN--DIPY 130
++ HGP+ F VY DFL YK G+Y H D + HAV ++G+G ++ + Y
Sbjct: 339 ELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDY 398
Query: 131 WLVANSWNDHWGDHGTFKILRGENEADIE 159
W+V NSW WG++G F+I RG +E IE
Sbjct: 399 WIVKNSWGTGWGENGYFRIRRGTDECAIE 427
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 10/91 (10%)
Query: 206 IADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVACTPNCWGCNGGWPQL-AW 264
+ +Q++CGSC++ + + R+ I +N T +S Q +V+C+ GC GG+P L A
Sbjct: 225 VRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAG 284
Query: 265 RFWGHNGVVTGGDYNSQEGCQPY--TLAPCE 293
++ G+V +E C PY T +PC+
Sbjct: 285 KYAQDFGLV-------EEACFPYTGTDSPCK 308
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 8/89 (8%)
Query: 79 QIYEHGPLVAIFSVYADFLQYKSGVYQHN-FGD-----SIGLHAVRVLGWGVE--NDIPY 130
++ +HGP+ F V+ DFL Y SG+Y H D + HAV ++G+G + + Y
Sbjct: 338 ELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTGLDY 397
Query: 131 WLVANSWNDHWGDHGTFKILRGENEADIE 159
W+V NSW WG+ G F+I RG +E IE
Sbjct: 398 WIVKNSWGSQWGESGYFRIRRGTDECAIE 426
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 15/101 (14%)
Query: 206 IADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVACTPNCWGCNGGWPQL-AW 264
+ +Q +CGSC++ + + R+ I +N T +S Q +V+C+P GC+GG+P L A
Sbjct: 224 VRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVSCSPYAQGCDGGFPYLIAG 283
Query: 265 RFWGHNGVVTGGDYNSQEGCQPYTL--APCEHHVQGPLQNC 303
++ GVV +E C PYT APC+ P +NC
Sbjct: 284 KYAQDFGVV-------EENCFPYTATDAPCK-----PKENC 312
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 177 ETMGCQNAKGLPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYF 236
E +G + P +FD R++ P + +Q +CGS WA S AI ++ IA+ +
Sbjct: 106 EDLGLNASVRYPASFDWRDQGMVSP----VKNQGSCGSSWAFSSTGAIESQMKIANGAGY 161
Query: 237 TGQISAQHIVACTPNCWGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLA 290
+S Q +V C PN GC+GGW A+ + NG + EG PY +A
Sbjct: 162 DSSVSEQQLVDCVPNALGCSGGWMNDAFTYVAQNGGI------DSEGAYPYEMA 209
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 80 IYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVENDIPYWLVANSWN 138
+ GP+ F F Y GVY + ++ HAV ++G+G EN YWLV NSW
Sbjct: 242 VATKGPVAVAFDADDPFGSYSGGVYYNPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWG 301
Query: 139 DHWGDHGTFKILRGEN 154
D WG G FKI R N
Sbjct: 302 DGWGLDGYFKIARNAN 317
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 83 HGPLVAIFSVYADFLQYKSGVYQ----HNFGDSIGLHAVRVLGWGVENDIPYWLVANSWN 138
+ P+ F V DFL Y+ G+Y H D + HAV +G+G EN IPYW+V NSW
Sbjct: 131 YNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVN-HAVLAVGYGEENGIPYWIVKNSWG 189
Query: 139 DHWGDHGTFKILRGEN 154
WG +G F I RG+N
Sbjct: 190 PQWGMNGYFLIERGKN 205
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 206 IADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVACTPNC--WGCNGGWPQLA 263
+ +Q +CGSCW S A+ + IA+ + ++ Q +V C N GC GG P A
Sbjct: 17 VKNQGSCGSCWTFSTTGALESAVAIATGKMLS--LAEQQLVDCAQNFNNHGCQGGLPSQA 74
Query: 264 WRFWGHNGVVTGGD 277
+ + +N + G D
Sbjct: 75 FEYIRYNKGIMGED 88
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 76 AMRQIYEHGPLVAIFSVYAD-FLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVA 134
A++ + P+ D F QY SG++ G +I HAV ++G+G E I YW+V
Sbjct: 123 ALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAID-HAVTIVGYGTEGGIDYWIVK 181
Query: 135 NSWNDHWGDHGTFKILR 151
NSW+ WG+ G +ILR
Sbjct: 182 NSWDTTWGEEGYMRILR 198
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 16/118 (13%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP D W ++ I Q CG CWA S + I + + +S Q ++
Sbjct: 1 LPSYVD----WRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLIS--LSEQELI 54
Query: 247 AC--TPNCWGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGPLQN 302
C T N GCNGG+ ++F ++ G N++E PYT E +V LQN
Sbjct: 55 DCGRTQNTRGCNGGYITDGFQF-----IINNGGINTEEN-YPYTAQDGECNVD--LQN 104
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 65 FKKAHMVPRCNAMRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWG 123
F H + GP V +DF+ Y+SG+YQ + + HAV +G+G
Sbjct: 202 FYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGIYQSQTCSPLRVNHAVLAVGYG 261
Query: 124 VENDIPYWLVANSWNDHWGDHGTFKILR 151
+ YW+V NSW WG+ G +++R
Sbjct: 262 TQGGTDYWIVKNSWGLSWGERGYIRMVR 289
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 183 NAKGLPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISA 242
N + +P D W E + + DQ NCGS WA S + + N + S
Sbjct: 88 NNRAVPDKID----WRESGYVTEVKDQGNCGSGWAFSTTGTMEGQYM--KNERTSISFSE 141
Query: 243 QHIVACTPNCW---GCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYT 288
Q +V C+ W GC GG + A+++ G+ T Y PYT
Sbjct: 142 QQLVDCS-RPWGNNGCGGGLMENAYQYLKQFGLETESSY-------PYT 182
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 71 VPRCN--AMRQIYEHGPLVAIFSVYAD-FLQYKSGVYQHNFGDSIGLHAVRVLGWGVEND 127
VP N A++ + P+ D F QY SG++ G ++ HA+ ++G+G E
Sbjct: 116 VPYNNEWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTAVD-HAIVIVGYGTEGG 174
Query: 128 IPYWLVANSWNDHWGDHGTFKILR 151
+ YW+V NSW+ WG+ G +ILR
Sbjct: 175 VDYWIVKNSWDTTWGEEGYMRILR 198
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP D W ++ I Q CG WA S + I S + +S Q ++
Sbjct: 1 LPSYVD----WRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLIS--LSEQELI 54
Query: 247 AC--TPNCWGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYT 288
C T N GC+GG+ ++F ++ G N++E PYT
Sbjct: 55 DCGRTQNTRGCDGGYITDGFQF-----IINDGGINTEEN-YPYT 92
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%)
Query: 73 RCNAMRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWL 132
R M +IY +GP+ Y G+Y + H V V GWG+ + YW+
Sbjct: 173 REKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGISDGTEYWI 232
Query: 133 VANSWNDHWGDHGTFKILRGENEADIEMGFNNRVEANSSEDDDL 176
V NSW + WG+ G +I+ + +N +E + + D +
Sbjct: 233 VRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEHCTFGDPI 276
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 187 LPRNFDARE----KWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYF-TGQIS 241
LP+++D R + +HI CGSCWA + +A++DR+ I G + + +S
Sbjct: 36 LPKSWDWRNVDGVNYASITRNQHIPQY--CGSCWAHASTSAMADRINIKRKGAWPSTLLS 93
Query: 242 AQHIVACTPNCWGCNGGWPQLAWRFWGHNGV 272
Q+++ C N C GG W + +G+
Sbjct: 94 VQNVIDCG-NAGSCEGGNDLSVWDYAHQHGI 123
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 73 RCNAMRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWL 132
R M +IY +GP+ Y G+Y + H V V GWG+ + YW+
Sbjct: 138 REKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGISDGTEYWI 197
Query: 133 VANSWNDHWGDHGTFKIL 150
V NSW + WG+ G +I+
Sbjct: 198 VRNSWGEPWGERGWLRIV 215
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 187 LPRNFDARE----KWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYF-TGQIS 241
LP+++D R + +HI CGSCWA + +A++DR+ I G + + +S
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQY--CGSCWAHASTSAMADRINIKRKGAWPSTLLS 58
Query: 242 AQHIVACTPNCWGCNGGWPQLAWRFWGHNGV 272
Q+++ C N C GG W + +G+
Sbjct: 59 VQNVIDC-GNAGSCEGGNDLSVWDYAHQHGI 88
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 77/194 (39%), Gaps = 30/194 (15%)
Query: 130 YWLVANSWNDHWGDHGTFKILRGENEADIEMGFNNRVEANSSEDDDLETMGCQNAKGLPR 189
YWL N + D D K + +A IE ++ E ++ LP
Sbjct: 63 YWLGLNEFADLSNDEFNEKYVGSLIDATIEQSYD-------------EEFINEDIVNLPE 109
Query: 190 NFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVACT 249
N D R+K P +RH Q +CGSCWA S + I + ++S Q +V C
Sbjct: 110 NVDWRKKGAVTP-VRH---QGSCGSCWAFSAVATVEGINKIRTGKLV--ELSEQELVDCE 163
Query: 250 PNCWGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTL--APCE-HHVQGPLQNCTLL 306
GC GG+P A + NG+ Y PY C V GP+ + +
Sbjct: 164 RRSHGCKGGYPPYALEYVAKNGIHLRSKY-------PYKAKQGTCRAKQVGGPIVKTSGV 216
Query: 307 GKLKTPECKQNCYN 320
G+++ P + N N
Sbjct: 217 GRVQ-PNNEGNLLN 229
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 75 NAMRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVA 134
N + I + V + S F YK G+++ G + AV +G+G Y L+
Sbjct: 226 NLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVD-GAVTAVGYGKSGGKGYILIK 284
Query: 135 NSWNDHWGDHGTFKILR 151
NSW WG+ G +I R
Sbjct: 285 NSWGTAWGEKGYIRIKR 301
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 71 VPRCN--AMRQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVEND 127
VP N A++ + P+ VA+ + +F Y SG++ G ++ HAV ++G+G E
Sbjct: 116 VPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVD-HAVTIVGYGTEGG 174
Query: 128 IPYWLVANSWNDHWGDHGTFKILR 151
I YW+V NSW WG+ G +I R
Sbjct: 175 IDYWIVKNSWGTTWGEEGYMRIQR 198
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP D W ++ I DQ CGSCWA S A+ IA+ + +S Q +V
Sbjct: 1 LPDYVD----WRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLIS--LSEQELV 54
Query: 247 AC--TPNCWGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYT 288
C T N GC+GG+ ++F +NG + + E PYT
Sbjct: 55 DCGRTQNTRGCDGGFMTDGFQFIINNGGI------NTEANYPYT 92
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 71 VPRCN--AMRQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVEND 127
VP N A++ + P+ VA+ + +F Y SG++ G ++ HAV ++G+G E
Sbjct: 116 VPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVD-HAVTIVGYGTEGG 174
Query: 128 IPYWLVANSWNDHWGDHGTFKILR 151
I YW+V NSW WG+ G +I R
Sbjct: 175 IDYWIVKNSWGTTWGEEGYMRIQR 198
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP D W ++ I DQ CGS WA S A+ IA+ + +S Q +V
Sbjct: 1 LPDYVD----WRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLIS--LSEQELV 54
Query: 247 AC--TPNCWGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYT 288
C T N GC+GG+ ++F +NG + + E PYT
Sbjct: 55 DCGRTQNTRGCDGGFMTDGFQFIINNGGI------NTEANYPYT 92
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 77 MRQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVE----NDIPY 130
M+ + GP+ VA+ + ++ F YKSG+Y S L H V V+G+G E ++ Y
Sbjct: 124 MKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDNSKY 183
Query: 131 WLVANSWNDHWGDHGTFKILRGEN 154
WLV NSW WG +G KI + +N
Sbjct: 184 WLVKNSWGPEWGSNGYVKIAKDKN 207
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP++ D R+K P + +Q CGSCWA S A+ ++ + + +S Q++V
Sbjct: 1 LPKSVDWRKKGYVTP----VKNQKQCGSCWAFSATGALEGQMFRKTGKLVS--LSEQNLV 54
Query: 247 ACT--PNCWGCNGGWPQLAWRFWGHNG 271
C+ GCNGG+ A+++ NG
Sbjct: 55 DCSRPQGNQGCNGGFMARAFQYVKENG 81
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 78 RQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVENDIPYWLVAN 135
R + GP+ VAI + F Y GVY +S L HAV +G+G++ +W++ N
Sbjct: 123 RAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKN 182
Query: 136 SWNDHWGDHGTFKILRGENEA 156
SW ++WG+ G + R +N A
Sbjct: 183 SWGENWGNKGYILMARNKNNA 203
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
P + D R+K P + +Q CGSCWA S A+ +L + +S Q++V
Sbjct: 2 PDSVDYRKKGYVTP----VKNQGQCGSCWAFSSVGALEGQLKKKTGKLLN--LSPQNLVD 55
Query: 248 CTPNCWGCNGGWPQLAWRFWGHN 270
C GC GG+ A+++ N
Sbjct: 56 CVSENDGCGGGYMTNAFQYVQKN 78
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 78 RQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVENDIPYWLVAN 135
R + GP+ VAI + F Y GVY +S L HAV +G+G++ +W++ N
Sbjct: 121 RAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKN 180
Query: 136 SWNDHWGDHGTFKILRGENEA 156
SW ++WG+ G + R +N A
Sbjct: 181 SWGENWGNKGYILMARNKNNA 201
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 190 NFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVACT 249
+ D R+K P + +Q CGSCWA S A+ +L + +S Q++V C
Sbjct: 2 SVDYRKKGYVTP----VKNQGQCGSCWAFSSVGALEGQLKKKTGKLLN--LSPQNLVDCV 55
Query: 250 PNCWGCNGGWPQLAWRFWGHN 270
GC GG+ A+++ N
Sbjct: 56 SENDGCGGGYMTNAFQYVQKN 76
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 78 RQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVENDIPYWLVAN 135
R + GP+ VAI + F Y GVY +S L HAV +G+G++ +W++ N
Sbjct: 122 RAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKN 181
Query: 136 SWNDHWGDHGTFKILRGENEA 156
SW ++WG+ G + R +N A
Sbjct: 182 SWGENWGNKGYILMARNKNNA 202
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
P + D R+K P + +Q CGSCWA S A+ +L + +S Q++V
Sbjct: 1 PDSVDYRKKGYVTP----VKNQGQCGSCWAFSSVGALEGQLKKKTGKLLN--LSPQNLVD 54
Query: 248 CTPNCWGCNGGWPQLAWRFWGHN 270
C GC GG+ A+++ N
Sbjct: 55 CVSENDGCGGGYMTNAFQYVQKN 77
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 78 RQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVENDIPYWLVAN 135
R + GP+ VAI + F Y GVY +S L HAV +G+G++ +W++ N
Sbjct: 125 RAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKN 184
Query: 136 SWNDHWGDHGTFKILRGENEA 156
SW ++WG+ G + R +N A
Sbjct: 185 SWGENWGNKGYILMARNKNNA 205
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
P + D R+K P + +Q CGSCWA S A+ +L + +S Q++V
Sbjct: 4 PDSVDYRKKGYVTP----VKNQGQCGSCWAFSSVGALEGQLKKKTGKLLN--LSPQNLVD 57
Query: 248 CTPNCWGCNGGWPQLAWRFWGHN 270
C GC GG+ A+++ N
Sbjct: 58 CVSENDGCGGGYMTNAFQYVQKN 80
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 77 MRQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVE----NDIPY 130
M+ + GP+ VA+ + ++ F YKSG+Y S L H V V+G+G E ++ Y
Sbjct: 124 MKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDNSKY 183
Query: 131 WLVANSWNDHWGDHGTFKILRGEN 154
WLV NSW WG +G KI + +N
Sbjct: 184 WLVKNSWGPEWGSNGYVKIAKDKN 207
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP++ D R+K P + +Q CGS WA S A+ ++ + + +S Q++V
Sbjct: 1 LPKSVDWRKKGYVTP----VKNQKQCGSXWAFSATGALEGQMFRKTGKLVS--LSEQNLV 54
Query: 247 ACT--PNCWGCNGGWPQLAWRFWGHNG 271
C+ GCNGG+ A+++ NG
Sbjct: 55 DCSRPQGNQGCNGGFMARAFQYVKENG 81
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 189 RNFD-AREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
NFD A W + + DQ NCGSCWA S ++ + I N T +S Q +V
Sbjct: 15 ENFDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLIT--LSEQELVD 72
Query: 248 CTPNCWGCNGGWPQLAWR-FWGHNGVVTGGDY 278
C+ +GCNGG A+ G+ GDY
Sbjct: 73 CSFKNYGCNGGLINNAFEDMIELGGICPDGDY 104
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 71 VPRCNAMRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIP- 129
VP + GP+ +V DF YK G++ GD + HAV ++G+G++ +
Sbjct: 131 VPDNKLKEALRFLGPISISVAVSDDFAFYKEGIFDGECGDQLN-HAVMLVGFGMKEIVNP 189
Query: 130 ---------YWLVANSWNDHWGDHGTFKILRGEN 154
Y+++ NSW WG+ G I E+
Sbjct: 190 LTKKGEKHYYYIIKNSWGQQWGERGFINIETDES 223
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 71 VPRCN--AMRQIYEHGP-LVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVEND 127
VP CN A++Q P VAI + A F QY SG++ G + H V ++G+
Sbjct: 111 VPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLN-HGVTIVGYQAN-- 167
Query: 128 IPYWLVANSWNDHWGDHGTFKILR 151
YW+V NSW +WG+ G ++LR
Sbjct: 168 --YWIVRNSWGRYWGEKGYIRMLR 189
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 20/116 (17%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP D R+K P + +Q +CGSCWA S + + I + + +S Q +V
Sbjct: 1 LPEQIDWRKKGAVTP----VKNQGSCGSCWAFSTVSTVESINQIRTGNLIS--LSEQELV 54
Query: 247 ACTPNCWGCNGGWPQLAWRFWGHNGVV-TGGDYNSQEGCQPYTLAPCEHHVQGPLQ 301
C GC GG A+++ +NG + T +Y PY VQGP Q
Sbjct: 55 DCDKKNHGCLGGAFVFAYQYIINNGGIDTQANY-------PY------KAVQGPCQ 97
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 78 RQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVENDIPYWLVAN 135
R + GP+ VAI + F Y GVY +S L HAV +G+G++ +W++ N
Sbjct: 222 RAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKN 281
Query: 136 SWNDHWGDHGTFKILRGENEA 156
SW ++WG+ G + R +N A
Sbjct: 282 SWGENWGNKGYILMARNKNNA 302
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
P + D R+K P + +Q CGSCWA S A+ +L + +S Q++V
Sbjct: 101 PDSVDYRKKGYVTP----VKNQGQCGSCWAFSSVGALEGQLKKKTGKLLN--LSPQNLVD 154
Query: 248 CTPNCWGCNGGWPQLAWRFWGHNGVVTGGD 277
C GC GG+ A+++ N + D
Sbjct: 155 CVSENDGCGGGYMTNAFQYVQKNRGIDSED 184
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 77 MRQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWG-VENDIPYWLV 133
M+ + GP+ VAI + + FL YK G+Y + S L HA+ V+G+G + N+ YWLV
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISNNQKYWLV 182
Query: 134 ANSWNDHWGDHGTFKILR 151
NSW + WG G K+ +
Sbjct: 183 KNSWGEEWGMGGYVKMAK 200
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 15/133 (11%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
PR+ D REK P + +Q CG+ +A S A+ ++ + + +S Q++V
Sbjct: 2 PRSVDWREKGYVTP----VKNQGQCGASYAFSATGALEGQMFRKTGRLIS--LSEQNLVD 55
Query: 248 CT--PNCWGCNGGWPQLAWRFWGHNGVVTGGDY----NSQEGCQ---PYTLAPCEHHVQG 298
C+ GCNGG A+++ NG + + ++E C+ Y++A V
Sbjct: 56 CSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDVGFVDI 115
Query: 299 PLQNCTLLGKLKT 311
P Q L+ + T
Sbjct: 116 PKQEKALMKAVAT 128
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 76 AMRQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVA 134
++++ + P+ V + + DF Y+SG++ + S HA+ V+G+G END +W+V
Sbjct: 122 SLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISAN-HALTVVGYGTENDKDFWIVK 180
Query: 135 NSWNDHWGDHGTFKILRGENEADIEMGF 162
NSW +WG+ G + R D + G
Sbjct: 181 NSWGKNWGESGYIRAERNIENPDGKCGI 208
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP + D RE P + +Q CGSCWA S A+ I + + +S Q +V
Sbjct: 3 LPDSIDWRENGAVVP----VKNQGGCGSCWAFSTVAAVEGINQIVTGDLIS--LSEQQLV 56
Query: 247 ACTPNCWGCNGGWPQLAWRFWGHNGVVTGGD---YNSQEG-CQPYTLAP 291
CT GC GGW A++F +NG + + Y Q+G C AP
Sbjct: 57 DCTTANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICNSTVNAP 105
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 78 RQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVENDIPYWLVAN 135
R + GP+ VAI + F Y GVY S L HAV +G+G++ +W++ N
Sbjct: 123 RAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNKHWIIKN 182
Query: 136 SWNDHWGDHGTFKILRGENEA 156
SW + WG+ G + R +N A
Sbjct: 183 SWGESWGNKGYILMARNKNNA 203
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
P + D R+K P + +Q CGSCWA S A+ +L + +S Q++V
Sbjct: 2 PDSIDYRKKGYVTP----VKNQGQCGSCWAFSSVGALEGQLKKKTGKLLN--LSPQNLVD 55
Query: 248 CTPNCWGCNGGWPQLAWRFWGHN 270
C GC GG+ A+++ N
Sbjct: 56 CVSENDGCGGGYMTNAFQYVQRN 78
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 78 RQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVENDIPYWLVAN 135
R + GP+ VAI + F Y +GVY S L HAV +G+G++ +W++ N
Sbjct: 123 RAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQAGNKHWIIKN 182
Query: 136 SWNDHWGDHGTFKILRGENEA 156
SW + WG+ G + R +N A
Sbjct: 183 SWGESWGNAGYILMARNKNNA 203
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
P + D R+K P + +Q CGSCWA S A+ +L A+ ++ Q++V
Sbjct: 2 PDSIDYRKKGYVTP----VKNQGQCGSCWAFSSVGALEGQLKKATGALLN--LAPQNLVD 55
Query: 248 CTPNCWGCNGGWPQLAWRFWGHN 270
C GC GG+ A+++ N
Sbjct: 56 CVSENDGCGGGYMTNAFQYVQRN 78
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 78 RQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVENDIPYWLVAN 135
R + GP+ VAI + F Y GVY +S L HAV +G+G +W++ N
Sbjct: 123 RAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNKHWIIKN 182
Query: 136 SWNDHWGDHGTFKILRGENEA 156
SW ++WG G K+ R +N A
Sbjct: 183 SWGENWGMGGYIKMARNKNNA 203
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
P + D REK P + +Q CGSCWA S A+ +L + +S Q++V
Sbjct: 2 PDSVDYREKGYVTP----VKNQGQCGSCWAFSSVGALEGQLKKKTGKLLN--LSPQNLVD 55
Query: 248 CTPNCWGCNGGWPQLAWRFWGHN 270
C GC GG+ A+++ N
Sbjct: 56 CVSENDGCGGGYMTNAFQYVQKN 78
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 71 VPRCN--AMRQIYEHGP-LVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVEND 127
VP+CN A++ P +VAI + F YK G++ G + H V ++G+G +
Sbjct: 111 VPQCNENALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGTKLN-HGVVIVGYGKD-- 167
Query: 128 IPYWLVANSWNDHWGDHGTFKILR 151
YW+V NSW HWG+ G ++ R
Sbjct: 168 --YWIVRNSWGRHWGEQGYTRMKR 189
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 22/135 (16%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP + D R K P + +Q CGSCWA S + I + + +S Q +V
Sbjct: 1 LPEHVDWRAKGAVIP----LKNQGKCGSCWAFSTVTTVESINQIRTGNLIS--LSEQQLV 54
Query: 247 ACTPNCWGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGPLQNCTLL 306
C+ GC GG+ A+++ NG + E PY QGP + +
Sbjct: 55 DCSKKNHGCKGGYFDRAYQYIIANGGI------DTEANYPYKA------FQGPCRAAKKV 102
Query: 307 GKLK----TPECKQN 317
++ P+C +N
Sbjct: 103 VRIDGCKGVPQCNEN 117
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 77 MRQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVE----NDIPY 130
M+ + GP+ VAI + + FL YK G+Y S + H V V+G+G E +D Y
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDDNKY 182
Query: 131 WLVANSWNDHWGDHGTFKILR 151
WLV NSW + WG G K+ +
Sbjct: 183 WLVKNSWGEEWGMGGYVKMAK 203
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 15/133 (11%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
PR+ D REK P + +Q CGS WA S A+ ++ + + +S Q++V
Sbjct: 2 PRSVDWREKGYVTP----VKNQGQCGSXWAFSATGALEGQMFRKTGRLIS--LSEQNLVD 55
Query: 248 CT--PNCWGCNGGWPQLAWRFWGHNGVVTGGDY----NSQEGCQ---PYTLAPCEHHVQG 298
C+ GCNGG A+++ NG + + ++E C+ Y++A V
Sbjct: 56 CSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDI 115
Query: 299 PLQNCTLLGKLKT 311
P Q L+ + T
Sbjct: 116 PKQEKALMKAVAT 128
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 80 IYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSWND 139
+ E+GPL AI F+ Y G+ + + H V ++G+ ++ PYW++ NSW++
Sbjct: 129 LAENGPL-AIAVDATSFMDYNGGILTSCTSEQLD-HGVLLVGYNDASNPPYWIIKNSWSN 186
Query: 140 HWGDHGTFKILRGENE 155
WG+ G +I +G N+
Sbjct: 187 MWGEDGYIRIEKGTNQ 202
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 58/150 (38%), Gaps = 27/150 (18%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
P D REK P + DQ CGSCWA S I + +A N + +S Q +V+
Sbjct: 2 PAAVDWREKGAVTP----VKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVS--LSEQMLVS 55
Query: 248 CTPNCWGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGPLQNCTLLG 307
C +GC GG A+ + V + G E PY + G
Sbjct: 56 CDTIDFGCGGGLMDNAFNWI----VNSNGGNVFTEASYPY-----------------VSG 94
Query: 308 KLKTPECKQNCYNPSYESTYRFDLKKGKKA 337
+ P+C+ N + T DL + + A
Sbjct: 95 NGEQPQCQMNGHEIGAAITDHVDLPQDEDA 124
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 10/91 (10%)
Query: 206 IADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVACTPNCWGCNGGWPQL-AW 264
+ +Q++CGSC++ + + R+ I +N T +S Q +V+C+ GC GG+P L A
Sbjct: 19 VRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAG 78
Query: 265 RFWGHNGVVTGGDYNSQEGCQPY--TLAPCE 293
++ G+V +E C PY T +PC+
Sbjct: 79 KYAQDFGLV-------EEACFPYTGTDSPCK 102
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 79 QIYEHGPLVAIFSVYADFLQYKSGVYQHN 107
++ HGP+ F VY DFL YK G+Y H
Sbjct: 133 ELVHHGPMAVAFEVYDDFLHYKKGIYHHT 161
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP N D R+K P +RH Q +CGSCWA S + I + ++S Q +V
Sbjct: 1 LPENVDWRKKGAVTP-VRH---QGSCGSCWAFSAVATVEGINKIRTGKLV--ELSEQELV 54
Query: 247 ACTPNCWGCNGGWPQLAWRFWGHNGV 272
C GC GG+P A + NG+
Sbjct: 55 DCERRSHGCKGGYPPYALEYVAKNGI 80
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 75 NAMRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVA 134
N + I + V + S F YK G+++ G + HAV +G+G Y L+
Sbjct: 120 NLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKV-EHAVTAVGYGKSGGKGYILIK 178
Query: 135 NSWNDHWGDHGTFKILR 151
NSW WG+ G +I R
Sbjct: 179 NSWGTAWGEKGYIRIKR 195
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP N D R+K P +RH Q +CGSCWA S + I + ++S Q +V
Sbjct: 1 LPENVDWRKKGAVTP-VRH---QGSCGSCWAFSAVATVEGINKIRTGKLV--ELSEQELV 54
Query: 247 ACTPNCWGCNGGWPQLAWRFWGHNGV 272
C GC GG+P A + NG+
Sbjct: 55 DCERRSHGCKGGYPPYALEYVAKNGI 80
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 75 NAMRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVA 134
N + I + V + S F YK G+++ G + HAV +G+G Y L+
Sbjct: 120 NLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVD-HAVTAVGYGKSGGKGYILIK 178
Query: 135 NSWNDHWGDHGTFKILR 151
NSW WG+ G +I R
Sbjct: 179 NSWGTAWGEKGYIRIKR 195
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
+P D R+K P + +Q +CGS WA S + I + I + + S Q ++
Sbjct: 152 IPEYVDWRQKGAVTP----VKNQGSCGSAWAFSAVSTIESIIKIRTGN--LNEYSEQELL 205
Query: 247 ACTPNCWGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGP 299
C +GCNGG+P A + G+ Y EG Q Y C +GP
Sbjct: 206 DCDRRSYGCNGGYPWSALQLVAQYGIHYRNTY-PYEGVQRY----CRSREKGP 253
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 17/99 (17%)
Query: 66 KKAHMVPRCNAMRQI--YEHGPL----------VAIFSVYADFLQYKSGVYQHNFGDSIG 113
+K + + +RQ+ Y G L V + + DF Y+ G++ G+ +
Sbjct: 250 EKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVD 309
Query: 114 LHAVRVLGWGVENDIPYWLVANSWNDHWGDHGTFKILRG 152
HAV +G+G Y L+ NSW WG++G +I RG
Sbjct: 310 -HAVAAVGYGPN----YILIRNSWGTGWGENGYIRIKRG 343
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 83 HGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSWNDHWG 142
+GP VA+ + ++ Y GV +++ H V ++G+ +PYW++ NSW WG
Sbjct: 132 NGP-VAVAVDASSWMTYTGGVMTSCVSEALD-HGVLLVGYNDSAAVPYWIIKNSWTTQWG 189
Query: 143 DHGTFKILRGENE 155
+ G +I +G N+
Sbjct: 190 EEGYIRIAKGSNQ 202
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 13/126 (10%)
Query: 193 AREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVACTPNC 252
A W ++ + DQ CGSCWA S + + +A G+ +S Q +V+C
Sbjct: 3 AAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLA--GHPLTNLSEQMLVSCDKTD 60
Query: 253 WGCNGGWPQLA--WRFWGHNGVVTGGD---YNSQEGCQPYTLAPCEHHVQGPLQNCTLLG 307
GC+GG A W +NG V D Y S EG P PC G T+ G
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISP----PCT--TSGHTVGATITG 114
Query: 308 KLKTPE 313
++ P+
Sbjct: 115 HVELPQ 120
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 26/115 (22%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQI---SAQ 243
LP D R K ++ I +Q CGSCWA S A+ + N TGQ+ S Q
Sbjct: 1 LPSFVDWRSK----GAVNSIKNQKQCGSCWAFSAVAAVE-----SINKIRTGQLISLSEQ 51
Query: 244 HIVACTPNCWGCNGGWPQLAWRFWGHNGVVTGGDYNSQE---------GCQPYTL 289
+V C GCNGGW A+++ ++T G ++Q+ C+PY L
Sbjct: 52 ELVDCDTASHGCNGGWMNNAFQY-----IITNGGIDTQQNYPYSAVQGSCKPYRL 101
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 75 NAMRQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLV 133
+A++ P+ V + + A F Y SG++ G + H V ++G+G ++ YW+V
Sbjct: 118 SALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQN-HGVVIVGYGTQSGKNYWIV 176
Query: 134 ANSWNDHWGDHGTFKILR 151
NSW +WG+ G + R
Sbjct: 177 RNSWGQNWGNQGYIWMER 194
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 189 RNFD-AREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
NFD A W + + DQ NCGS WA S ++ + I N T +S Q +V
Sbjct: 14 ENFDHAAYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLIT--LSEQELVD 71
Query: 248 CTPNCWGCNGGWPQLAWR-FWGHNGVVTGGDY 278
C+ +GCNGG A+ G+ GDY
Sbjct: 72 CSFKNYGCNGGLINNAFEDMIELGGICPDGDY 103
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 71 VPRCNAMRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIP- 129
VP + GP+ +V DF YK G++ GD + HAV ++G+G++ +
Sbjct: 130 VPDNKLKEALRFLGPISISVAVSDDFAFYKEGIFDGECGDQLN-HAVMLVGFGMKEIVNP 188
Query: 130 ---------YWLVANSWNDHWGDHGTFKILRGEN 154
Y+++ NSW WG+ G I E+
Sbjct: 189 LTKKGEKHYYYIIKNSWGQQWGERGFINIETDES 222
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 75 NAMRQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVEND-IPYWL 132
NA+ + + P+ VAI + +DF Y GV+ + G + H V ++G+G D YW
Sbjct: 122 NALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELD-HGVAIVGYGTTIDGTKYWT 180
Query: 133 VANSWNDHWGDHGTFKILRG 152
V NSW WG+ G ++ RG
Sbjct: 181 VKNSWGPEWGEKGYIRMERG 200
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
+P + D R+K ++ + DQ CGSCWA S A+ I +N + +S Q +V
Sbjct: 2 VPASVDWRKK----GAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVS--LSEQELV 55
Query: 247 AC-TPNCWGCNGGWPQLAWRFWGHNGVVT 274
C T GCNGG A+ F G +T
Sbjct: 56 DCDTDQNQGCNGGLMDYAFEFIKQRGGIT 84
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 48.1 bits (113), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 115 HAVRVLGWGVEN--DIPYWLVANSWNDHWGDHGTFKILRGENEADIE 159
HAV ++G+G ++ + YW+V NSW WG++G F+I RG +E IE
Sbjct: 11 HAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIE 57
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 77 MRQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVE----NDIPY 130
M+ + GP+ VAI + + FL YK G+Y S + H V V+G+G E ++ Y
Sbjct: 124 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKY 183
Query: 131 WLVANSWNDHWGDHGTFKILR 151
WLV NSW + WG G K+ +
Sbjct: 184 WLVKNSWGEEWGMGGYVKMAK 204
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 15/133 (11%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
PR+ D REK P + +Q CGSCWA S A+ ++ + + +S Q++V
Sbjct: 3 PRSVDWREKGYVTP----VKNQGQCGSCWAFSATGALEGQMFRKTGRLIS--LSEQNLVD 56
Query: 248 CT--PNCWGCNGGWPQLAWRFWGHNGVVTGGDY----NSQEGCQ---PYTLAPCEHHVQG 298
C+ GCNGG A+++ NG + + ++E C+ Y++A V
Sbjct: 57 CSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDI 116
Query: 299 PLQNCTLLGKLKT 311
P Q L+ + T
Sbjct: 117 PKQEKALMKAVAT 129
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 77 MRQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVE----NDIPY 130
M+ + GP+ VAI + + FL YK G+Y S + H V V+G+G E ++ Y
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKY 182
Query: 131 WLVANSWNDHWGDHGTFKILR 151
WLV NSW + WG G K+ +
Sbjct: 183 WLVKNSWGEEWGMGGYVKMAK 203
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 15/133 (11%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
PR+ D REK P + +Q CGSCWA S A+ ++ + + +S Q++V
Sbjct: 2 PRSVDWREKGYVTP----VKNQGQCGSCWAFSATGALEGQMFRKTGRLIS--LSEQNLVD 55
Query: 248 CT--PNCWGCNGGWPQLAWRFWGHNGVVTGGDY----NSQEGCQ---PYTLAPCEHHVQG 298
C+ GCNGG A+++ NG + + ++E C+ Y++A V
Sbjct: 56 CSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDI 115
Query: 299 PLQNCTLLGKLKT 311
P Q L+ + T
Sbjct: 116 PKQEKALMKAVAT 128
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 77 MRQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVE----NDIPY 130
M+ + GP+ VAI + + FL YK G+Y S + H V V+G+G E ++ Y
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKY 182
Query: 131 WLVANSWNDHWGDHGTFKILR 151
WLV NSW + WG G K+ +
Sbjct: 183 WLVKNSWGEEWGMGGYVKMAK 203
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 15/133 (11%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
PR+ D REK P + +Q CGSCWA S A+ ++ + + +S Q++V
Sbjct: 2 PRSVDWREKGYVTP----VKNQGQCGSCWAFSATGALEGQMFRKTGRLIS--LSEQNLVD 55
Query: 248 CT--PNCWGCNGGWPQLAWRFWGHNGVVTGGDY----NSQEGCQ---PYTLAPCEHHVQG 298
C+ GCNGG A+++ NG + + ++E C+ Y++A V
Sbjct: 56 CSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDI 115
Query: 299 PLQNCTLLGKLKT 311
P Q L+ + T
Sbjct: 116 PKQEKALMKAVAT 128
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
+P D R+K P + +Q +CGSCWA S I + I + Q S Q ++
Sbjct: 1 IPEYVDWRQKGAVTP----VKNQGSCGSCWAFSAVVTIEGIIKIRTGN--LNQYSEQELL 54
Query: 247 ACTPNCWGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGP 299
C +GCNGG+P A + G+ Y EG Q Y C +GP
Sbjct: 55 DCDRRSYGCNGGYPWSALQLVAQYGIHYRNTY-PYEGVQRY----CRSREKGP 102
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 66 KKAHMVPRCNAMRQI--YEHGPL----------VAIFSVYADFLQYKSGVYQHNFGDSIG 113
+K + + +RQ+ Y G L V + + DF Y+ G++ G+ +
Sbjct: 99 EKGPYAAKTDGVRQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVD 158
Query: 114 LHAVRVLGWGVENDIPYWLVANSWNDHWGDHGTFKILRGENEA 156
HAV +G+G Y L+ NSW WG++G +I RG +
Sbjct: 159 -HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNS 196
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 77 MRQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVE----NDIPY 130
M+ + GP+ VAI + + FL YK G+Y S + H V V+G+G E ++ Y
Sbjct: 161 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKY 220
Query: 131 WLVANSWNDHWGDHGTFKILR 151
WLV NSW + WG G K+ +
Sbjct: 221 WLVKNSWGEEWGMGGYVKMAK 241
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 15/133 (11%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
PR+ D REK P + +Q CGSCWA S A+ ++ + + +S Q++V
Sbjct: 40 PRSVDWREKGYVTP----VKNQGQCGSCWAFSATGALEGQMFRKTGRLIS--LSEQNLVD 93
Query: 248 CT--PNCWGCNGGWPQLAWRFWGHNGVVTGGDY----NSQEGCQ---PYTLAPCEHHVQG 298
C+ GCNGG A+++ NG + + ++E C+ Y++A V
Sbjct: 94 CSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDI 153
Query: 299 PLQNCTLLGKLKT 311
P Q L+ + T
Sbjct: 154 PKQEKALMKAVAT 166
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 83 HGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSWNDHWG 142
+GP VA+ + ++ Y GV + + H V ++G+ +PYW++ NSW WG
Sbjct: 132 NGP-VAVAVDASSWMTYTGGVMTSCVSEQLD-HGVLLVGYNDSAAVPYWIIKNSWTTQWG 189
Query: 143 DHGTFKILRGENE 155
+ G +I +G N+
Sbjct: 190 EEGYIRIAKGSNQ 202
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 13/126 (10%)
Query: 193 AREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVACTPNC 252
A W ++ + DQ CGSCWA S + + +A G+ +S Q +V+C
Sbjct: 3 AAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLA--GHPLTNLSEQMLVSCDKTD 60
Query: 253 WGCNGGWPQLA--WRFWGHNGVVTGGD---YNSQEGCQPYTLAPCEHHVQGPLQNCTLLG 307
GC+GG A W +NG V D Y S EG P PC G T+ G
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISP----PCT--TSGHTVGATITG 114
Query: 308 KLKTPE 313
++ P+
Sbjct: 115 HVELPQ 120
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 77 MRQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVE----NDIPY 130
M+ + GP+ VAI + + FL YK G+Y S + H V V+G+G E ++ Y
Sbjct: 124 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKY 183
Query: 131 WLVANSWNDHWGDHGTFKILR 151
WLV NSW + WG G K+ +
Sbjct: 184 WLVKNSWGEEWGMGGYVKMAK 204
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 15/133 (11%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
PR+ D REK P + +Q CGS WA S A+ ++ + + +S Q++V
Sbjct: 3 PRSVDWREKGYVTP----VKNQGQCGSAWAFSATGALEGQMFRKTGRLIS--LSEQNLVD 56
Query: 248 CT--PNCWGCNGGWPQLAWRFWGHNGVVTGGDY----NSQEGCQ---PYTLAPCEHHVQG 298
C+ GCNGG A+++ NG + + ++E C+ Y++A V
Sbjct: 57 CSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDI 116
Query: 299 PLQNCTLLGKLKT 311
P Q L+ + T
Sbjct: 117 PKQEKALMKAVAT 129
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 77 MRQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVE----NDIPY 130
M+ + GP+ VAI + + FL YK G+Y S + H V V+G+G E ++ Y
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKY 182
Query: 131 WLVANSWNDHWGDHGTFKILR 151
WLV NSW + WG G K+ +
Sbjct: 183 WLVKNSWGEEWGMGGYVKMAK 203
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 15/133 (11%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
PR+ D REK P + +Q CGS WA S A+ ++ + + +S Q++V
Sbjct: 2 PRSVDWREKGYVTP----VKNQGQCGSXWAFSATGALEGQMFRKTGRLIS--LSEQNLVD 55
Query: 248 CT--PNCWGCNGGWPQLAWRFWGHNGVVTGGDY----NSQEGCQ---PYTLAPCEHHVQG 298
C+ GCNGG A+++ NG + + ++E C+ Y++A V
Sbjct: 56 CSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDI 115
Query: 299 PLQNCTLLGKLKT 311
P Q L+ + T
Sbjct: 116 PKQEKALMKAVAT 128
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 77 MRQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVE----NDIPY 130
M+ + GP+ VAI + + FL YK G+Y S + H V V+G+G E ++ Y
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKY 182
Query: 131 WLVANSWNDHWGDHGTFKILR 151
WLV NSW + WG G K+ +
Sbjct: 183 WLVKNSWGEEWGMGGYVKMAK 203
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 15/133 (11%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
PR+ D REK P + +Q CGS WA S A+ ++ + + +S Q++V
Sbjct: 2 PRSVDWREKGYVTP----VKNQGQCGSAWAFSATGALEGQMFRKTGRLIS--LSEQNLVD 55
Query: 248 CT--PNCWGCNGGWPQLAWRFWGHNGVVTGGDY----NSQEGCQ---PYTLAPCEHHVQG 298
C+ GCNGG A+++ NG + + ++E C+ Y++A V
Sbjct: 56 CSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDI 115
Query: 299 PLQNCTLLGKLKT 311
P Q L+ + T
Sbjct: 116 PKQEKALMKAVAT 128
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 83 HGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSWNDHWG 142
+GP VA+ + ++ Y GV + + H V ++G+ +PYW++ NSW WG
Sbjct: 132 NGP-VAVAVDASSWMTYTGGVMTSCVSEQLD-HGVLLVGYNDGAAVPYWIIKNSWTTQWG 189
Query: 143 DHGTFKILRGENE 155
+ G +I +G N+
Sbjct: 190 EEGYIRIAKGSNQ 202
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 13/126 (10%)
Query: 193 AREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVACTPNC 252
A W ++ + DQ CGSCWA S + + +A G+ ++ Q +V+C
Sbjct: 3 AAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLA--GHPLTNLAEQMLVSCDKTD 60
Query: 253 WGCNGGWPQLA--WRFWGHNGVVTGGD---YNSQEGCQPYTLAPCEHHVQGPLQNCTLLG 307
GC+GG A W +NG V D Y S EG P PC G T+ G
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISP----PCT--TSGHTVGATITG 114
Query: 308 KLKTPE 313
++ P+
Sbjct: 115 HVELPQ 120
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 83 HGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSWNDHWG 142
+GP VA+ + ++ Y GV + + H V ++G+ +PYW++ NSW WG
Sbjct: 132 NGP-VAVAVDASSWMTYTGGVMTSCVSEQLD-HGVLLVGYNDGAAVPYWIIKNSWTTQWG 189
Query: 143 DHGTFKILRGENE 155
+ G +I +G N+
Sbjct: 190 EEGYIRIAKGSNQ 202
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 13/126 (10%)
Query: 193 AREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVACTPNC 252
A W ++ + DQ CGSCWA S + + +A G+ ++ Q +V+C
Sbjct: 3 AAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLA--GHPLTNLAEQMLVSCDKTD 60
Query: 253 WGCNGGWPQLA--WRFWGHNGVVTGGD---YNSQEGCQPYTLAPCEHHVQGPLQNCTLLG 307
GC+GG A W +NG V D Y S EG P PC G T+ G
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISP----PCT--TSGHTVGATITG 114
Query: 308 KLKTPE 313
++ P+
Sbjct: 115 HVELPQ 120
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 77 MRQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVE----NDIPY 130
M+ + GP+ VAI + + FL YK G+Y S + H V V+G+G E ++ Y
Sbjct: 219 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKY 278
Query: 131 WLVANSWNDHWGDHGTFKILR 151
WLV NSW + WG G K+ +
Sbjct: 279 WLVKNSWGEEWGMGGYVKMAK 299
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 15/133 (11%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
PR+ D REK P + +Q CGS WA S A+ ++ + + +S Q++V
Sbjct: 98 PRSVDWREKGYVTP----VKNQGQCGSXWAFSATGALEGQMFRKTGRLIS--LSEQNLVD 151
Query: 248 CT--PNCWGCNGGWPQLAWRFWGHNGVVTGGDY----NSQEGCQ---PYTLAPCEHHVQG 298
C+ GCNGG A+++ NG + + ++E C+ Y++A V
Sbjct: 152 CSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDI 211
Query: 299 PLQNCTLLGKLKT 311
P Q L+ + T
Sbjct: 212 PKQEKALMKAVAT 224
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
+P D R+K P + +Q +CGSCWA S I + I + + S Q ++
Sbjct: 1 IPEYVDWRQKGAVTP----VKNQGSCGSCWAFSAVVTIEGIIKIRTGN--LNEYSEQELL 54
Query: 247 ACTPNCWGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGP 299
C +GCNGG+P A + G+ Y EG Q Y C +GP
Sbjct: 55 DCDRRSYGCNGGYPWSALQLVAQYGIHYRNTY-PYEGVQRY----CRSREKGP 102
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 17/99 (17%)
Query: 66 KKAHMVPRCNAMRQI--YEHGPL----------VAIFSVYADFLQYKSGVYQHNFGDSIG 113
+K + + +RQ+ Y G L V + + DF Y+ G++ G+ +
Sbjct: 99 EKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVD 158
Query: 114 LHAVRVLGWGVENDIPYWLVANSWNDHWGDHGTFKILRG 152
HAV +G+G Y L+ NSW WG++G +I RG
Sbjct: 159 -HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRG 192
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 48/112 (42%), Gaps = 11/112 (9%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
P D R+K P + +Q +CGSCWA S I + I + Q S Q ++
Sbjct: 2 PEYVDWRQKGAVTP----VKNQGSCGSCWAFSAVVTIEGIIKIRTGN--LNQYSEQELLD 55
Query: 248 CTPNCWGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGP 299
C +GCNGG+P A + G+ Y EG Q Y C +GP
Sbjct: 56 CDRRSYGCNGGYPWSALQLVAQYGIHYRNTY-PYEGVQRY----CRSREKGP 102
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 66 KKAHMVPRCNAMRQI--YEHGPL----------VAIFSVYADFLQYKSGVYQHNFGDSIG 113
+K + + +RQ+ Y G L V + + DF Y+ G++ G+ +
Sbjct: 99 EKGPYAAKTDGVRQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVD 158
Query: 114 LHAVRVLGWGVENDIPYWLVANSWNDHWGDHGTFKILRGENEA 156
HAV +G+G Y L+ NSW WG++G +I RG +
Sbjct: 159 -HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNS 196
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP + D REK + + Q +CG+CWA S A+ +L + + T +SAQ++V
Sbjct: 1 LPDSVDWREK----GCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVT--LSAQNLV 54
Query: 247 ACTPNCW---GCNGGWPQLAWRFWGHN-GVVTGGDYNSQ---EGCQ---PYTLAPCEHHV 296
C+ + GCNGG+ A+++ N G+ + Y + + CQ Y A C +
Sbjct: 55 DCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYT 114
Query: 297 QGP 299
+ P
Sbjct: 115 ELP 117
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 80 IYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSWN 138
+ GP+ V + + + F Y+SGVY H V V+G+G N YWLV NSW
Sbjct: 128 VANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWG 187
Query: 139 DHWGDHGTFKILR 151
++G+ G ++ R
Sbjct: 188 HNFGEEGYIRMAR 200
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 71 VPRCN--AMRQIYEHGP-LVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVEND 127
VP CN A+++ P +VAI + F YKSG++ G + H V ++G+ +
Sbjct: 111 VPHCNENALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGTKLN-HGVVIVGYWKD-- 167
Query: 128 IPYWLVANSWNDHWGDHGTFKILR 151
YW+V NSW +WG+ G ++ R
Sbjct: 168 --YWIVRNSWGRYWGEQGYIRMKR 189
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 56/143 (39%), Gaps = 22/143 (15%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP D R+K P + +Q CGSCWA S + + I + + +S Q +V
Sbjct: 1 LPEQIDWRKKGAVTP----VKNQGKCGSCWAFSTVSTVESINQIRTGNLIS--LSEQQLV 54
Query: 247 ACTPNCWGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGPLQNCTLL 306
C GC GG A+++ NG + E PY VQGP + +
Sbjct: 55 DCNKKNHGCKGGAFVYAYQYIIDNGGI------DTEANYPYKA------VQGPCRAAKKV 102
Query: 307 GKLK----TPECKQNCYNPSYES 325
++ P C +N + S
Sbjct: 103 VRIDGYKGVPHCNENALKKAVAS 125
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 77 MRQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVENDI----PY 130
M+ + GP+ VAI + + FL YK G+Y S + H V V+G+G E+ Y
Sbjct: 215 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDGNKY 274
Query: 131 WLVANSWNDHWGDHGTFKILR 151
WLV NSW + WG G K+ +
Sbjct: 275 WLVKNSWGEEWGMGGYVKMAK 295
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 15/133 (11%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
PR+ D REK P + +Q CGS WA S A+ ++ + + +S Q++V
Sbjct: 94 PRSVDWREKGYVTP----VKNQGQCGSSWAFSATGALEGQMFRKTGRLIS--LSEQNLVD 147
Query: 248 CT--PNCWGCNGGWPQLAWRFWGHNGVVTGGDY----NSQEGCQ---PYTLAPCEHHVQG 298
C+ GCNGG A+++ NG + + ++E C+ Y++A V
Sbjct: 148 CSGPEGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDI 207
Query: 299 PLQNCTLLGKLKT 311
P Q L+ + T
Sbjct: 208 PKQEKALMKAVAT 220
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQ---ISAQH 244
P + D REK P + +Q+ CGSCWA S I N TGQ +S Q
Sbjct: 2 PESIDWREKGAVTP----VKNQNPCGSCWAFSTVATIE-----GINKIITGQLISLSEQE 52
Query: 245 IVACTPNCWGCNGGWPQLAWRFWGHNGVVTGGDY 278
++ C GC+GG+ + ++ NGV T +Y
Sbjct: 53 LLDCERRSHGCDGGYQTTSLQYVVDNGVHTEREY 86
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 96 FLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSWNDHWGDHGTFKILRGENE 155
F YK G+Y+ G + HAV +G+G Y L+ NSW +WG+ G +I R
Sbjct: 141 FQFYKGGIYEGPCGTNTD-HAVTAVGYGKT----YLLLKNSWGPNWGEKGYIRIKRASGR 195
Query: 156 A 156
+
Sbjct: 196 S 196
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 80 IYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSWN 138
+ GP+ V + + + F Y+SGVY H V V+G+G N YWLV NSW
Sbjct: 131 VANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWG 190
Query: 139 DHWGDHGTFKILR 151
++G+ G ++ R
Sbjct: 191 HNFGEEGYIRMAR 203
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP + D REK + + Q +CG+CWA S A+ +L + + + +SAQ++V
Sbjct: 4 LPDSVDWREK----GCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVS--LSAQNLV 57
Query: 247 ACTPNCW---GCNGGWPQLAWRFWGHN-GVVTGGDYNSQ---EGCQ---PYTLAPCEHHV 296
C+ + GCNGG+ A+++ N G+ + Y + + CQ Y A C +
Sbjct: 58 DCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYT 117
Query: 297 QGP 299
+ P
Sbjct: 118 ELP 120
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 80 IYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSWN 138
+ GP+ V + + + F Y+SGVY H V V+G+G N YWLV NSW
Sbjct: 128 VANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWG 187
Query: 139 DHWGDHGTFKILR 151
++G+ G ++ R
Sbjct: 188 HNFGEEGYIRMAR 200
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP + D REK + + Q +CG+CWA S A+ +L + + + +SAQ++V
Sbjct: 1 LPDSVDWREK----GCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVS--LSAQNLV 54
Query: 247 ACTPNCW---GCNGGWPQLAWRFWGHN-GVVTGGDYNSQ---EGCQ---PYTLAPCEHHV 296
C+ + GCNGG+ A+++ N G+ + Y + + CQ Y A C +
Sbjct: 55 DCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYT 114
Query: 297 QGP 299
+ P
Sbjct: 115 ELP 117
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 80 IYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSWN 138
+ GP+ V + + + F Y+SGVY H V V+G+G N YWLV NSW
Sbjct: 129 VANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWG 188
Query: 139 DHWGDHGTFKILR 151
++G+ G ++ R
Sbjct: 189 HNFGEEGYIRMAR 201
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP + D REK + + Q +CG+CWA S A+ +L + + + +SAQ++V
Sbjct: 2 LPDSVDWREK----GCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVS--LSAQNLV 55
Query: 247 ACTPNCW---GCNGGWPQLAWRFWGHN-GVVTGGDYNSQ---EGCQ---PYTLAPCEHHV 296
C+ + GCNGG+ A+++ N G+ + Y + + CQ Y A C +
Sbjct: 56 DCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYT 115
Query: 297 QGP 299
+ P
Sbjct: 116 ELP 118
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 80 IYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSWN 138
+ GP+ V + + + F Y+SGVY H V V+G+G N YWLV NSW
Sbjct: 129 VANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWG 188
Query: 139 DHWGDHGTFKILR 151
++G+ G ++ R
Sbjct: 189 HNFGEEGYIRMAR 201
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP + D REK + + Q +CG+CWA S A+ +L + + + +SAQ++V
Sbjct: 2 LPDSVDWREK----GCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVS--LSAQNLV 55
Query: 247 ACTPNCW---GCNGGWPQLAWRFWGHN-GVVTGGDYNSQ---EGCQ---PYTLAPCEHHV 296
C+ + GCNGG+ A+++ N G+ + Y + + CQ Y A C +
Sbjct: 56 DCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYT 115
Query: 297 QGP 299
+ P
Sbjct: 116 ELP 118
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 80 IYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSWN 138
+ GP+ V + + + F Y+SGVY H V V+G+G N YWLV NSW
Sbjct: 130 VANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWG 189
Query: 139 DHWGDHGTFKILR 151
++G+ G ++ R
Sbjct: 190 HNFGEEGYIRMAR 202
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 16/123 (13%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP + D REK + + Q +CG+ WA S A+ +L + + + +SAQ++V
Sbjct: 3 LPDSVDWREK----GCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVS--LSAQNLV 56
Query: 247 ACTPNCW---GCNGGWPQLAWRFWGHN-GVVTGGDYNSQ---EGCQ---PYTLAPCEHHV 296
C+ + GCNGG+ A+++ N G+ + Y + + CQ Y A C +
Sbjct: 57 DCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYT 116
Query: 297 QGP 299
+ P
Sbjct: 117 ELP 119
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 80 IYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSWN 138
+ GP+ V + + + F Y+SGVY H V V+G+G N YWLV NSW
Sbjct: 128 VANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWG 187
Query: 139 DHWGDHGTFKILR 151
++G+ G ++ R
Sbjct: 188 HNFGEEGYIRMAR 200
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 16/123 (13%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP + D REK + + Q +CG+ WA S A+ +L + + + +SAQ++V
Sbjct: 1 LPDSVDWREK----GCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVS--LSAQNLV 54
Query: 247 ACTPNCW---GCNGGWPQLAWRFWGHN-GVVTGGDYNSQ---EGCQ---PYTLAPCEHHV 296
C+ + GCNGG+ A+++ N G+ + Y + + CQ Y A C +
Sbjct: 55 DCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYT 114
Query: 297 QGP 299
+ P
Sbjct: 115 ELP 117
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 80 IYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSWN 138
+ GP+ V + + + F Y+SGVY H V V+G+G N YWLV NSW
Sbjct: 128 VANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWG 187
Query: 139 DHWGDHGTFKILR 151
++G+ G ++ R
Sbjct: 188 HNFGEKGYIRMAR 200
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP + D REK + + Q +CG+CWA S A+ +L + + + +SAQ++V
Sbjct: 1 LPDSVDWREK----GCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVS--LSAQNLV 54
Query: 247 ACTPNCW---GCNGGWPQLAWRFWGHN-GVVTGGDYNSQ---EGCQ---PYTLAPCEHHV 296
C+ + GCNGG+ A+++ N G+ + Y + + CQ Y A C +
Sbjct: 55 DCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCRKYT 114
Query: 297 QGP 299
+ P
Sbjct: 115 ELP 117
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 80 IYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSWN 138
+ GP+ V + + + F Y+SGVY H V V+G+G N YWLV NSW
Sbjct: 128 VANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWG 187
Query: 139 DHWGDHGTFKILR 151
++G+ G ++ R
Sbjct: 188 HNFGEKGYIRMAR 200
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP + D REK + + Q +CG+CWA S A+ +L + + + +SAQ++V
Sbjct: 1 LPDSVDWREK----GCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVS--LSAQNLV 54
Query: 247 ACTPNCW---GCNGGWPQLAWRFWGHN-GVVTGGDYNSQ---EGCQ---PYTLAPCEHHV 296
C+ + GCNGG+ A+++ N G+ + Y + + CQ Y A C +
Sbjct: 55 DCSTKKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSAYRAATCRKYT 114
Query: 297 QGP 299
+ P
Sbjct: 115 ELP 117
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 80 IYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSWN 138
+ GP+ V + + + F Y+SGVY H V V+G+G N YWLV NSW
Sbjct: 129 VANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWG 188
Query: 139 DHWGDHGTFKILR 151
++G+ G ++ R
Sbjct: 189 HNFGEEGYIRMAR 201
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 16/123 (13%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP + D REK + + Q +CG+ WA S A+ +L + + + +SAQ++V
Sbjct: 2 LPDSVDWREK----GCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVS--LSAQNLV 55
Query: 247 ACTPNCW---GCNGGWPQLAWRFWGHN-GVVTGGDYNSQ---EGCQ---PYTLAPCEHHV 296
C+ + GCNGG+ A+++ N G+ + Y + + CQ Y A C +
Sbjct: 56 DCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYT 115
Query: 297 QGP 299
+ P
Sbjct: 116 ELP 118
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 84 GPL-VAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSWNDHWG 142
GP+ V + + + F Y+SGVY H V V+G+G N YWLV NSW ++G
Sbjct: 132 GPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFG 191
Query: 143 DHGTFKILR 151
+ G ++ R
Sbjct: 192 EEGYIRMAR 200
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP + D REK + + Q +CG+CWA S A+ +L + + + +SAQ++V
Sbjct: 1 LPDSVDWREK----GCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVS--LSAQNLV 54
Query: 247 ACTPNCW---GCNGGWPQLAWRFWGHN-GVVTGGDYNSQ---EGCQ---PYTLAPCEHHV 296
C+ + GCNGG+ A+++ N G+ + Y + + CQ Y A C +
Sbjct: 55 DCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYT 114
Query: 297 QGP 299
+ P
Sbjct: 115 ELP 117
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 80 IYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSWN 138
+ GP+ V + + + F Y+SGVY H V V+G+G N YWLV NSW
Sbjct: 128 VANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWG 187
Query: 139 DHWGDHGTFKILR 151
++G+ G ++ R
Sbjct: 188 HNFGEEGYIRMAR 200
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP + D REK + + Q +CG+ WA S A+ +L + + + +SAQ++V
Sbjct: 1 LPDSVDWREK----GCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVS--LSAQNLV 54
Query: 247 ACTPNCW---GCNGGWPQLAWRFWGHN-GVVTGGDYNSQE---GCQ---PYTLAPCEHHV 296
C+ + GCNGG+ A+++ N G+ + Y + CQ Y A C +
Sbjct: 55 DCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLKCQYDSKYRAATCSKYT 114
Query: 297 QGP 299
+ P
Sbjct: 115 ELP 117
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 15/133 (11%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
PR+ D REK P + +Q CGSCWA S A+ ++ + + +S Q++V
Sbjct: 2 PRSVDWREKGYVTP----VKNQGQCGSCWAFSATGALEGQMFRKTGRLIS--LSEQNLVD 55
Query: 248 CT--PNCWGCNGGWPQLAWRFWGHNGVVTGGDY----NSQEGCQ---PYTLAPCEHHVQG 298
C+ GCNGG A+++ NG + + ++E C+ Y++A V
Sbjct: 56 CSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDI 115
Query: 299 PLQNCTLLGKLKT 311
P Q L+ + T
Sbjct: 116 PKQEKALMKAVAT 128
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 77 MRQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVEN 126
M+ + GP+ VAI + + FL YK G+Y S + H V V+G+G E+
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFES 174
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 84 GPL-VAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSWNDHWG 142
GP+ V + + + F Y+SGVY H V V+G+G N YWLV NSW ++G
Sbjct: 230 GPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFG 289
Query: 143 DHGTFKILRGE 153
+ G ++ R +
Sbjct: 290 EEGYIRMARNK 300
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 16/123 (13%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP + D REK + + Q +CG+ WA S A+ +L + + + +SAQ++V
Sbjct: 99 LPDSVDWREK----GCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVS--LSAQNLV 152
Query: 247 ACTPNCW---GCNGGWPQLAWRFWGHN-GVVTGGDYNSQ---EGCQ---PYTLAPCEHHV 296
C+ + GCNGG+ A+++ N G+ + Y + + CQ Y A C +
Sbjct: 153 DCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYT 212
Query: 297 QGP 299
+ P
Sbjct: 213 ELP 215
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 115 HAVRVLGWGVENDIPYWLVANSWNDHWGDHGTFKILRG 152
HAV ++G+G +D+P+W + NSW WG+ G + + RG
Sbjct: 161 HAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRG 198
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAI 224
P +D R K ++ + DQ CGSCWA SV +
Sbjct: 2 PPEWDWRSK----GAVTKVKDQGMCGSCWAFSVTGNV 34
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 78 RQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGV-ENDIPYWLVANS 136
R + VA+ + F+ Y GV+ G + H V V+G+GV E+ YW V NS
Sbjct: 131 RAVANQPVSVAVEASGKAFMFYSEGVFTGECGTELD-HGVAVVGYGVAEDGKAYWTVKNS 189
Query: 137 WNDHWGDHGTFKILR 151
W WG+ G ++ +
Sbjct: 190 WGPSWGEQGYIRVEK 204
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP + D R+K ++ + DQ CGSCWA S ++ I + + +S Q ++
Sbjct: 4 LPPSVDWRQKG----AVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVS--LSEQELI 57
Query: 247 AC-TPNCWGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGPLQNCTL 305
C T + GC GG A+ + +NG + E PY A +V QN +
Sbjct: 58 DCDTADNDGCQGGLMDNAFEYIKNNGGLI------TEAAYPYRAARGTCNVARAAQNSPV 111
Query: 306 L 306
+
Sbjct: 112 V 112
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 11/113 (9%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
+P D R+K P + +Q +CGS WA S I + I + Q S Q ++
Sbjct: 1 IPEYVDWRQKGAVTP----VKNQGSCGSXWAFSAVVTIEGIIKIRTGN--LNQYSEQELL 54
Query: 247 ACTPNCWGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGP 299
C +GCNGG+P A + G+ Y EG Q Y C +GP
Sbjct: 55 DCDRRSYGCNGGYPWSALQLVAQYGIHYRNTY-PYEGVQRY----CRSREKGP 102
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 17/99 (17%)
Query: 66 KKAHMVPRCNAMRQI--YEHGPL----------VAIFSVYADFLQYKSGVYQHNFGDSIG 113
+K + + +RQ+ Y G L V + + DF Y+ G++ G+ +
Sbjct: 99 EKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVD 158
Query: 114 LHAVRVLGWGVENDIPYWLVANSWNDHWGDHGTFKILRG 152
HAV +G+G Y L+ NSW WG++G +I RG
Sbjct: 159 -HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRG 192
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 103 VYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSWNDHWGDHGTFKILRGENEADIE 159
+ QH+ G HAV ++G+G YW+V NSW+ WGD G G N IE
Sbjct: 159 IIQHDNGYQPNYHAVNIVGYGSTQGDDYWIVRNSWDTTWGDSGYGYFQAGNNLMMIE 215
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 178 TMGCQ-NAKGLPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYF 236
T C+ N+ +P D R P I Q CGSCWA S A N
Sbjct: 1 TSACRINSVNVPSELDLRSLRTVTP----IRMQGGCGSCWAFSGVAATESAYLAYRNTSL 56
Query: 237 TGQISAQHIVACTPNCWGCNGGWPQLAWRFWGHNGVVTGGDY 278
+S Q +V C GC+G + NGVV Y
Sbjct: 57 --DLSEQELVDCASQ-HGCHGDTIPRGIEYIQQNGVVEERSY 95
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 11/113 (9%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
+P D R+K P + +Q +CGS WA S I + I + Q S Q ++
Sbjct: 1 IPEYVDWRQKGAVTP----VKNQGSCGSXWAFSAVVTIEGIIKIRTGN--LNQYSEQELL 54
Query: 247 ACTPNCWGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGP 299
C +GCNGG+P A + G+ Y EG Q Y C +GP
Sbjct: 55 DCDRRSYGCNGGYPWSALQLVAQYGIHYRNTY-PYEGVQRY----CRSREKGP 102
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 17/99 (17%)
Query: 66 KKAHMVPRCNAMRQI--YEHGPL----------VAIFSVYADFLQYKSGVYQHNFGDSIG 113
+K + + +RQ+ Y G L V + + DF Y+ G++ G+ +
Sbjct: 99 EKGPYAAKTDGVRQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVD 158
Query: 114 LHAVRVLGWGVENDIPYWLVANSWNDHWGDHGTFKILRG 152
HAV +G+G Y L+ NSW WG++G +I RG
Sbjct: 159 -HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRG 192
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 80 IYEHGPLVAIFSVYADFLQYKSG--VYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSW 137
+ + GP VA+ D LQ+ SG Y S H V V+G+G +N YW++ NSW
Sbjct: 240 VGQAGP-VAVAIDATDELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSW 298
Query: 138 NDHWGDHGTFKILR 151
WG+ G ++ +R
Sbjct: 299 GSGWGESGYWRQVR 312
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 202 SLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVACTPNC--WGCNGGW 259
++ + DQ CGS W+ S A+ +L + G T +S Q+++ C+ + GC+GGW
Sbjct: 126 AVSEVKDQGQCGSSWSFSTTGAVEGQLAL-QRGRLT-SLSEQNLIDCSSSYGNAGCDGGW 183
Query: 260 PQLAWRFWGHNGVVTGGDY 278
A+ + G+++ Y
Sbjct: 184 MDSAFSYIHDYGIMSESAY 202
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 11/113 (9%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
+P D R+K P + +Q +CGS WA S I + I + + S Q ++
Sbjct: 1 IPEYVDWRQKGAVTP----VKNQGSCGSXWAFSAVVTIEGIIKIRTGN--LNEYSEQELL 54
Query: 247 ACTPNCWGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGP 299
C +GCNGG+P A + G+ Y EG Q Y C +GP
Sbjct: 55 DCDRRSYGCNGGYPWSALQLVAQYGIHYRNTY-PYEGVQRY----CRSREKGP 102
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 17/99 (17%)
Query: 66 KKAHMVPRCNAMRQI--YEHGPL----------VAIFSVYADFLQYKSGVYQHNFGDSIG 113
+K + + +RQ+ Y G L V + + DF Y+ G++ G+ +
Sbjct: 99 EKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVD 158
Query: 114 LHAVRVLGWGVENDIPYWLVANSWNDHWGDHGTFKILRG 152
HAV +G+G Y L+ NSW WG++G +I RG
Sbjct: 159 -HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRG 192
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
P++ D R K P + +Q CGS WA S + I + ++S Q +V
Sbjct: 2 PQSIDWRAKGAVTP----VKNQGACGSXWAFSTIATVEGINKIVTGNLL--ELSEQELVD 55
Query: 248 CTPNCWGCNGGWPQLAWRFWGHNGVVTGGDYNSQ 281
C + +GC GG+ + ++ +NGV T Y Q
Sbjct: 56 CDKHSYGCKGGYQTTSLQYVANNGVHTSKVYPYQ 89
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 96 FLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSWNDHWGDHGTFKILR 151
F YKSGV+ G + HAV +G+G + Y ++ NSW +WG+ G ++ R
Sbjct: 141 FQLYKSGVFDGPCGTKLD-HAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKR 195
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 95 DFLQYKSGVYQH-NFGDSIGL-HAVRVLGWGVENDIPYWLVANSWNDHWGDHGTFKILR 151
DF Y G+Y N G+ H V ++G+G E+ + YW+ NSW + WG G +I R
Sbjct: 146 DFHFYSGGIYDGGNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQR 204
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 197 WPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVACTPNCWGCN 256
W + + + Q CGS WA S AI IA+ + +S Q ++ C GC
Sbjct: 8 WSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVS--LSEQELIDCVDESEGCY 65
Query: 257 GGWPQLAWRF-WGHNGVVTGGDY 278
GW ++ + H G+ + DY
Sbjct: 66 NGWHYQSFEWVVKHGGIASEADY 88
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 72 PRCNAMRQIY--EHGPLVAIFSVY-ADFLQYKSG--VYQHNFGDSIGLHAVRVLGWGVEN 126
P N +R+ H + I + D ++ G + Q + G HAV ++G+
Sbjct: 202 PNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQ 261
Query: 127 DIPYWLVANSWNDHWGDHG 145
+ YW+V NSW+ +WGD+G
Sbjct: 262 GVDYWIVRNSWDTNWGDNG 280
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 38/102 (37%), Gaps = 9/102 (8%)
Query: 173 DDDLETMGCQNAKGLPRNFDAREKWPECPSLRHIADQSNCGSCWAVS-VANAISDRLCIA 231
D + ET C P D R+ P I Q CGS WA S VA S L
Sbjct: 76 DLNAETNACSINGNAPAEIDLRQMRTVTP----IRMQGGCGSAWAFSGVAATESAYLAYR 131
Query: 232 SNGYFTGQISAQHIVACTPNCWGCNGGWPQLAWRFWGHNGVV 273
++ Q +V C GC+G + HNGVV
Sbjct: 132 DQSL---DLAEQELVDCASQ-HGCHGDTIPRGIEYIQHNGVV 169
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 15/133 (11%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
PR+ D REK P + +Q CGS WA S A+ ++ + + +S Q++V
Sbjct: 2 PRSVDWREKGYVTP----VKNQGQCGSXWAFSATGALEGQMFRKTGRLIS--LSEQNLVD 55
Query: 248 CT--PNCWGCNGGWPQLAWRFWGHNGVVTGGDY----NSQEGCQ---PYTLAPCEHHVQG 298
C+ GCNGG A+++ NG + + ++E C+ Y++A V
Sbjct: 56 CSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDI 115
Query: 299 PLQNCTLLGKLKT 311
P Q L+ + T
Sbjct: 116 PKQEKALMKAVAT 128
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 77 MRQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVEN 126
M+ + GP+ VAI + + FL YK G+Y S + H V V+G+G E+
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFES 174
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 72 PRCNAMRQIY--EHGPLVAIFSVY-ADFLQYKSG--VYQHNFGDSIGLHAVRVLGWGVEN 126
P N +R+ H + I + D ++ G + Q + G HAV ++G+
Sbjct: 122 PNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQ 181
Query: 127 DIPYWLVANSWNDHWGDHG 145
+ YW+V NSW+ +WGD+G
Sbjct: 182 GVDYWIVRNSWDTNWGDNG 200
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 36/97 (37%), Gaps = 9/97 (9%)
Query: 178 TMGCQNAKGLPRNFDAREKWPECPSLRHIADQSNCGSCWAVS-VANAISDRLCIASNGYF 236
T C P D R+ P I Q CGSCWA S VA S L
Sbjct: 1 TNACSINGNAPAEIDLRQMRTVTP----IRMQGGCGSCWAFSGVAATESAYLAYRQQSL- 55
Query: 237 TGQISAQHIVACTPNCWGCNGGWPQLAWRFWGHNGVV 273
++ Q +V C GC+G + HNGVV
Sbjct: 56 --DLAEQELVDCASQ-HGCHGDTIPRGIEYIQHNGVV 89
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 72 PRCNAMRQIY--EHGPLVAIFSVY-ADFLQYKSG--VYQHNFGDSIGLHAVRVLGWGVEN 126
P N +R+ H + I + D ++ G + Q + G HAV ++G+
Sbjct: 122 PNVNKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQ 181
Query: 127 DIPYWLVANSWNDHWGDHG 145
+ YW+V NSW+ +WGD+G
Sbjct: 182 GVDYWIVRNSWDTNWGDNG 200
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 34/96 (35%), Gaps = 7/96 (7%)
Query: 178 TMGCQNAKGLPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFT 237
T C P D R+ P I Q CGSCWA S A N
Sbjct: 1 TNACSINGNAPAEIDLRQMRTVTP----IRMQGGCGSCWAFSGVAATESAYLAYRNQSL- 55
Query: 238 GQISAQHIVACTPNCWGCNGGWPQLAWRFWGHNGVV 273
++ Q +V C GC+G + HNGVV
Sbjct: 56 -DLAEQELVDCASQ-HGCHGDTIPRGIEYIQHNGVV 89
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 72 PRCNAMRQIY--EHGPLVAIFSVY-ADFLQYKSG--VYQHNFGDSIGLHAVRVLGWGVEN 126
P N +R+ H + I + D ++ G + Q + G HAV ++G+
Sbjct: 122 PNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQ 181
Query: 127 DIPYWLVANSWNDHWGDHG 145
+ YW+V NSW+ +WGD+G
Sbjct: 182 GVDYWIVRNSWDTNWGDNG 200
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 35/97 (36%), Gaps = 9/97 (9%)
Query: 178 TMGCQNAKGLPRNFDAREKWPECPSLRHIADQSNCGSCWAVS-VANAISDRLCIASNGYF 236
T C P D R+ P I Q CGS WA S VA S L
Sbjct: 1 TNACSINGNAPAEIDLRQMRTVTP----IRMQGGCGSXWAFSGVAATESAYLAYRQQSL- 55
Query: 237 TGQISAQHIVACTPNCWGCNGGWPQLAWRFWGHNGVV 273
++ Q +V C GC+G + HNGVV
Sbjct: 56 --DLAEQELVDCASQ-HGCHGDTIPRGIEYIQHNGVV 89
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 71 VPRCN--AMRQIYEHGPLVAIFSVYADFLQ-YKSGVYQHNFGDSIGLHAVRVLGWGVEND 127
VPR N A+ Q P+ + Q Y+ G++ G SI HAV +G+G ND
Sbjct: 113 VPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSID-HAVAAVGYG--ND 169
Query: 128 IPYWLVANSWNDHWGDHGTFKILRGE 153
Y L+ NSW WG+ G +I RG
Sbjct: 170 --YILIKNSWGTGWGEGGYIRIKRGS 193
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
+P + D R+K P + +Q CGSCW S A+ N TGQ+ +
Sbjct: 1 IPTSIDWRQKGAVTP----VRNQGGCGSCWTFSSVAAVE-----GINKIVTGQLLSLSEQ 51
Query: 247 A---CTPNCWGCNGGWPQLAWRFWGHNGV 272
C +GC GG+P A ++ ++G+
Sbjct: 52 ELLDCERRSYGCRGGFPLYALQYVANSGI 80
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 109 GDSIGLHAVRVLGWG--VEND---IPYWLVANSWNDHWGDHGTFKI 149
GD HAV ++G+G V ++ YW+V NSW +WGD G FK+
Sbjct: 193 GDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 238
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 109 GDSIGLHAVRVLGWG--VEND---IPYWLVANSWNDHWGDHGTFKI 149
GD HAV ++G+G V ++ YW+V NSW +WGD G FK+
Sbjct: 194 GDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 239
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 206 IADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVACTPNCWGCNGGWPQLAW 264
+ DQ+ CGSCWA S ++ + I F S Q +V C+ GC GG+ A+
Sbjct: 35 VKDQALCGSCWAFSSVGSVESQYAIRKKALFL--FSEQELVDCSVKNNGCYGGYITNAF 91
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 84 GPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVEN----------DIPYWLV 133
GP+ + DF Y+ G Y G + HAV ++G+G+++ Y+++
Sbjct: 146 GPISISIAASDDFAFYRGGFYDGECGAAPN-HAVILVGYGMKDIYNEDTGRMEKFYYYII 204
Query: 134 ANSWNDHWGDHGTFKILRGEN 154
NSW WG+ G + EN
Sbjct: 205 KNSWGSDWGEGGYINLETDEN 225
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP + D R K P + Q C SCWA S + I + ++S Q +V
Sbjct: 1 LPESVDWRAKGAVTP----VKHQGYCESCWAFSTVATVEGINKIKTGNLV--ELSEQELV 54
Query: 247 ACTPNCWGCNGGWPQLAWRFWGHNGV 272
C +GCN G+ + ++ NG+
Sbjct: 55 DCDLQSYGCNRGYQSTSLQYVAQNGI 80
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 83 HGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSWNDHW 141
H P+ V + S DF YK G+++ + G + HAV +G+G Y L+ NSW W
Sbjct: 127 HQPVSVVVESAGRDFQNYKGGIFEGSCGTKVD-HAVTAVGYGKSGGKGYILIKNSWGPGW 185
Query: 142 GDHGTFKILR 151
G++G +I R
Sbjct: 186 GENGYIRIRR 195
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 71 VPRCN--AMRQIYEHGPL-VAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGV--E 125
VPR + AM+ P+ +AI + F Y GV+ + G + H V ++G+G E
Sbjct: 121 VPRRSEAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDASCGTDLD-HGVLLVGYGTDKE 179
Query: 126 NDIPYWLVANSWNDHWGDHG 145
+ +W++ NSW WG G
Sbjct: 180 SKKDFWIMKNSWGTGWGRDG 199
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 10/128 (7%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP A W + + DQ +CGSCWA S A+ C + + +S Q ++
Sbjct: 3 LPSELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVS--LSEQELM 60
Query: 247 ACT--PNCWGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGPLQNCT 304
C+ C+GG A+++ +G + E PY E Q +
Sbjct: 61 DCSRAEGNQSCSGGEMNDAFQYVLDSGGIC------SEDAYPYLARDEECRAQSCEKVVK 114
Query: 305 LLGKLKTP 312
+LG P
Sbjct: 115 ILGFKDVP 122
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 115 HAVRVLGWGVE-NDIPYWLVANSWNDHWGDHGTFKILRGENEAD 157
H V ++G+G + YW+V NSW WG G I R N D
Sbjct: 162 HTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPD 205
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 52/147 (35%), Gaps = 24/147 (16%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
P + D R+K ++ + DQ CG CWA AI I + + +S Q IV
Sbjct: 2 PASIDWRKK----GAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLIS--VSEQQIVD 55
Query: 248 CTPNCWGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLA--------PCEHHVQG- 298
C GG A+R+ NG + + + PYT P + G
Sbjct: 56 CDTXXXXXXGGDADDAFRWVITNGGI------ASDANYPYTGVDGTCDLNKPIAARIDGY 109
Query: 299 ---PLQNCTLLGKLKTPECKQNCYNPS 322
P + LL + N Y S
Sbjct: 110 TNVPNSSSALLDAVAKQPVSVNIYTSS 136
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 130 YWLVANSWNDHWGDHGTFKILR 151
YWLV NSW + WG G K+ +
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAK 25
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,150,460
Number of Sequences: 62578
Number of extensions: 434785
Number of successful extensions: 1122
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 811
Number of HSP's gapped (non-prelim): 217
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)