RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1911
(342 letters)
>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of
cathepsin B and similar proteins, including
tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin
B is a lysosomal papain-like cysteine peptidase which is
expressed in all tissues and functions primarily as an
exopeptidase through its carboxydipeptidyl activity.
Together with other cathepsins, it is involved in the
degradation of proteins, proenzyme activation, Ag
processing, metabolism and apoptosis. Cathepsin B has
been implicated in a number of human diseases such as
cancer, rheumatoid arthritis, osteoporosis and
Alzheimer's disease. The unique carboxydipeptidyl
activity of cathepsin B is attributed to the presence of
an occluding loop in its active site which favors the
binding of the C-termini of substrate proteins. Some
members of this group do not possess the occluding loop.
TIN-Ag is an extracellular matrix basement protein which
was originally identified as a target Ag involved in
anti-tubular basement membrane antibody-mediated
interstitial nephritis. It plays a role in renal
tubulogenesis and is defective in hereditary
tubulointerstitial disorders. TIN-Ag is exclusively
expressed in kidney tissues. .
Length = 236
Score = 181 bits (461), Expect = 8e-56
Identities = 75/151 (49%), Positives = 87/151 (57%), Gaps = 15/151 (9%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
P +FDAREKWP C S+ I DQ NCGSCWA S A SDRLCI SNG +SAQ +++
Sbjct: 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLS 60
Query: 248 CTPNC-WGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLAPCEHHVQGPLQNCTLL 306
C C GCNGG+P AW++ GVVTG GCQPYT+ PC HH +GP C
Sbjct: 61 CCSGCGDGCNGGYPDAAWKYLTTTGVVTG-------GCQPYTIPPCGHHPEGPPPCCG-- 111
Query: 307 GKLKTPECKQNCYNPSYESTYRFDLKKGKKA 337
TP C C + E TY D KGK A
Sbjct: 112 ----TPYCTPKCQDG-CEKTYEEDKHKGKSA 137
Score = 156 bits (397), Expect = 3e-46
Identities = 50/83 (60%), Positives = 63/83 (75%)
Query: 77 MRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANS 136
M++I +GP+ A F+VY DFL YKSGVYQH G +G HAV+++GWGVEN +PYWL ANS
Sbjct: 148 MKEIMTNGPVQAAFTVYEDFLYYKSGVYQHTSGKQLGGHAVKIIGWGVENGVPYWLAANS 207
Query: 137 WNDHWGDHGTFKILRGENEADIE 159
W WG++G F+ILRG NE IE
Sbjct: 208 WGTDWGENGYFRILRGSNECGIE 230
>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease.
Length = 213
Score = 112 bits (283), Expect = 1e-29
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 77 MRQIYEHGPLVAIFSVYADFLQ-YKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVAN 135
+ ++GP+ Y D Q YKSGVY+H HAV ++G+G EN +PYW+V N
Sbjct: 123 QAALAKNGPVSVAIDAYEDDFQLYKSGVYKHTECSGELDHAVLIVGYGTENGVPYWIVKN 182
Query: 136 SWNDHWGDHGTFKILRGENEADIEM 160
SW WG++G F+I RG NE I
Sbjct: 183 SWGTDWGENGYFRIARGVNECGIAS 207
Score = 104 bits (261), Expect = 1e-26
Identities = 41/106 (38%), Positives = 53/106 (50%), Gaps = 20/106 (18%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQ---ISAQ 243
LP +FD REK ++ + DQ CGSCWA S A+ R CI TG+ +S Q
Sbjct: 1 LPESFDWREKG----AVTPVKDQGQCGSCWAFSAVGALEGRYCIK-----TGKLVSLSEQ 51
Query: 244 HIVACTPNCWGCNGGWPQLAWRFW-GHNGVVTGGDYNSQEGCQPYT 288
+V C GCNGG P A+ + + G+VT DY PYT
Sbjct: 52 QLVDCDTGNNGCNGGLPDNAFEYIKKNGGIVTESDY-------PYT 90
>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease.
Length = 175
Score = 104 bits (261), Expect = 6e-27
Identities = 38/105 (36%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV 246
LP +FD R+K P + DQ CGSCWA S A+ R CI + + +S Q +V
Sbjct: 1 LPESFDWRKKGAVTP----VKDQGQCGSCWAFSATGALEGRYCIKTGKLVS--LSEQQLV 54
Query: 247 ACTPNCW-GCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYTLA 290
C+ GCNGG P A+ + NG + E C PYT +
Sbjct: 55 DCSGGGNCGCNGGLPDNAFEYIKKNGGLET------ESCYPYTGS 93
Score = 90.3 bits (225), Expect = 8e-22
Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 13/98 (13%)
Query: 75 NAMRQIYEHGPLV---------AIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGV 124
NA I ++G L ++ +DF YKSG+Y H S L HAV ++G+G
Sbjct: 71 NAFEYIKKNGGLETESCYPYTGSVAIDASDFQFYKSGIYDHPGCGSGTLDHAVLIVGYGT 130
Query: 125 --ENDIPYWLVANSWNDHWGDHGTFKILRGE-NEADIE 159
EN YW+V NSW WG++G F+I RG+ NE IE
Sbjct: 131 EVENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIE 168
>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database
nomenclature); composed of cysteine peptidases (CPs)
similar to papain, including the mammalian CPs
(cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain
is an endopeptidase with specific substrate preferences,
primarily for bulky hydrophobic or aromatic residues at
the S2 subsite, a hydrophobic pocket in papain that
accommodates the P2 sidechain of the substrate (the
second residue away from the scissile bond). Most
members of the papain subfamily are endopeptidases. Some
exceptions to this rule can be explained by specific
details of the catalytic domains like the occluding loop
in cathepsin B which confers an additional
carboxydipeptidyl activity and the mini-chain of
cathepsin H resulting in an N-terminal exopeptidase
activity. Papain-like CPs have different functions in
various organisms. Plant CPs are used to mobilize
storage proteins in seeds. Parasitic CPs act
extracellularly to help invade tissues and cells, to
hatch or to evade the host immune system. Mammalian CPs
are primarily lysosomal enzymes with the exception of
cathepsin W, which is retained in the endoplasmic
reticulum. They are responsible for protein degradation
in the lysosome. Papain-like CPs are synthesized as
inactive proenzymes with N-terminal propeptide regions,
which are removed upon activation. In addition to its
inhibitory role, the propeptide is required for proper
folding of the newly synthesized enzyme and its
stabilization in denaturing pH conditions. Residues
within the propeptide region also play a role in the
transport of the proenzyme to lysosomes or acidified
vesicles. Also included in this subfamily are proteins
classified as non-peptidase homologs, which lack
peptidase activity or have missing active site residues.
Length = 210
Score = 91.1 bits (227), Expect = 1e-21
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 80 IYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGL-HAVRVLGWGVENDIPYWLVANSWN 138
+ +GP+ + F YK G+Y + L HAV ++G+G EN + YW+V NSW
Sbjct: 124 LANYGPVSVAIDASSSFQFYKGGIYSGPCCSNTNLNHAVLLVGYGTENGVDYWIVKNSWG 183
Query: 139 DHWGDHGTFKILRGEN 154
WG+ G +I RG N
Sbjct: 184 TSWGEKGYIRIARGSN 199
Score = 76.9 bits (190), Expect = 2e-16
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 14/102 (13%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
P + D REK P + DQ +CGSCWA S A+ I + + +S Q +V
Sbjct: 1 PESVDWREKGAVTP----VKDQGSCGSCWAFSTVGALEGAYAIKTGKLVS--LSEQQLVD 54
Query: 248 CTPN-CWGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYT 288
C+ + GCNGG P A+ + + G+ + DY PYT
Sbjct: 55 CSTSGNNGCNGGNPDNAFEYVKNGGLASESDY-------PYT 89
>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as
Dipeptidyl Peptidase I (DPPI), an atypical papain-like
cysteine peptidase with chloride dependency and
dipeptidyl aminopeptidase activity, resulting from its
tetrameric structure which limits substrate access. Each
subunit of the tetramer is composed of three peptides:
the heavy and light chains, which together adopts the
papain fold and forms the catalytic domain; and the
residual propeptide region, which forms a beta barrel
and points towards the substrate's N-terminus. The
subunit composition is the result of the unique
characteristic of procathepsin C maturation involving
the cleavage of the catalytic domain and the
non-autocatalytic excision of an activation peptide
within its propeptide region. By removing N-terminal
dipeptide extensions, cathepsin C activates granule
serine peptidases (granzymes) involved in cell-mediated
apoptosis, inflammation and tissue remodelling.
Loss-of-function mutations in cathepsin C are associated
with Papillon-Lefevre and Haim-Munk syndromes, rare
diseases characterized by hyperkeratosis and early-onset
periodontitis. Cathepsin C is widely expressed in many
tissues with high levels in lung, kidney and placenta.
It is also highly expressed in cytotoxic lymphocytes and
mature myeloid cells.
Length = 243
Score = 91.3 bits (227), Expect = 2e-21
Identities = 41/98 (41%), Positives = 51/98 (52%), Gaps = 15/98 (15%)
Query: 77 MRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGL-------------HAVRVLGWG 123
+IY +GP+V F VY+DF YK GVY H D + HAV ++GWG
Sbjct: 137 KWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWG 196
Query: 124 VE--NDIPYWLVANSWNDHWGDHGTFKILRGENEADIE 159
+ YW+V NSW WG+ G FKI RG NE IE
Sbjct: 197 EDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIE 234
Score = 63.9 bits (156), Expect = 8e-12
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 187 LPRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGY----FTGQISA 242
LP++FD + + + +Q CGSC+A + A+ R+ IASN +S
Sbjct: 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSP 60
Query: 243 QHIVACTPNCWGCNGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYT 288
QH+++C+ GC+GG+P L +F G+VT E PYT
Sbjct: 61 QHVLSCSQYSQGCDGGFPFLVGKFAEDFGIVT-------EDYFPYT 99
>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only
papain-like lysosomal cysteine peptidase exhibiting
carboxymonopeptidase activity. It can also act as a
carboxydipeptidase, like cathepsin B, but has been shown
to preferentially cleave substrates through a
monopeptidyl carboxypeptidase pathway. The propeptide
region of cathepsin X, the shortest among papain-like
peptidases, is covalently attached to the active site
cysteine in the inactive form of the enzyme. Little is
known about the biological function of cathepsin X. Some
studies point to a role in early tumorigenesis. A more
recent study indicates that cathepsin X expression is
restricted to immune cells suggesting a role in
phagocytosis and the regulation of the immune response.
Length = 239
Score = 69.0 bits (169), Expect = 1e-13
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 77 MRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVEND-IPYWLVAN 135
M +IY GP+ Y GVY+ D + H + V GWGV+ + + YW+V N
Sbjct: 142 MAEIYARGPISCGIMATEALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRN 201
Query: 136 SWNDHWGDHGTFKILRG 152
SW + WG+ G F+I+
Sbjct: 202 SWGEPWGERGWFRIVTS 218
Score = 51.3 bits (123), Expect = 1e-07
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 212 CGSCWAVSVANAISDRLCIASNGYF-TGQISAQHIVACTPNCWGCNGGWPQLAWRFWGHN 270
CGSCWA +A++DR+ IA G + + +S Q ++ C C+GG P + + +
Sbjct: 28 CGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCA-GGGSCHGGDPGGVYEYAHKH 86
Query: 271 GVVTGGDYNSQEGCQPYTLAPCEHHVQGPLQNCTLLGK 308
G+ E C PY E + C G+
Sbjct: 87 GIP-------DETCNPYQAKDGECNPFNRCGTCNPFGE 117
>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional.
Length = 693
Score = 70.8 bits (173), Expect = 2e-13
Identities = 40/109 (36%), Positives = 54/109 (49%), Gaps = 27/109 (24%)
Query: 77 MRQIYEHGPLVAIFSVYADFLQYKSGVY----------------QHNFGDSIG-----LH 115
M +IY +GP+VA F DF Y GVY +HN +I H
Sbjct: 561 MNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGWEKVNH 620
Query: 116 AVRVLGWGVENDI-----PYWLVANSWNDHWGDHGTFKILRGENEADIE 159
A+ ++GWG E +I YW+ NSW +WG G FKI+RG+N + IE
Sbjct: 621 AIVLVGWG-EEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIE 668
Score = 48.8 bits (116), Expect = 3e-06
Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 21/153 (13%)
Query: 144 HGTFKILRGENEADIEMGFNNRVEANSSEDDDLETMGCQNAKGLPRNFDAREKWPECPSL 203
+ F ++A EM N + + +LE LP+NF + +
Sbjct: 344 NTNFLAHVHGSDATNEMDLENYEDTEKAPHRELE------IDELPKNFTWGDPFNNNTRE 397
Query: 204 RHIADQSNCGSCWAVSVANAISDRLCIASN--------GYFTGQISAQHIVACTPNCWGC 255
+ +Q CGSC+ S A R+ IA F +S Q +++C+ GC
Sbjct: 398 YDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFYDQGC 457
Query: 256 NGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYT 288
NGG+P L + G+ + PYT
Sbjct: 458 NGGFPYLVSKMAKLQGI-------PLDKVFPYT 483
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 60.5 bits (147), Expect = 6e-11
Identities = 28/44 (63%), Positives = 36/44 (81%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ ++KK+KKKKKE KK+KK+KK KKE+ + K KKKKKKKKKK
Sbjct: 150 EEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 55.9 bits (135), Expect = 2e-09
Identities = 25/45 (55%), Positives = 36/45 (80%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+++KK+KKKK+E KK+KK+KK K+E+ + K KKKKKKKKK+
Sbjct: 149 VEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 48.2 bits (115), Expect = 9e-07
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
S +T K +K+ + EE++KK+KKKKK+ +++KK+KK KK+K + K
Sbjct: 132 SETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPK 181
Score = 46.6 bits (111), Expect = 3e-06
Identities = 18/51 (35%), Positives = 36/51 (70%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
L +T +K+ K ++E + ++++KK+K+++K+ KK+KK+KK KK+K
Sbjct: 127 ELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKM 177
Score = 41.6 bits (98), Expect = 2e-04
Identities = 18/38 (47%), Positives = 29/38 (76%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK 41
E + K + KK+KK+KK++K+K + K K+++KKKKKK
Sbjct: 156 EKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 37.0 bits (86), Expect = 0.005
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKK 32
++ K KK KK+K + + KKKKKKKKK
Sbjct: 163 VKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
Score = 37.0 bits (86), Expect = 0.006
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ + +K+ K +K+ E ++++KK+KKKKK+ KK
Sbjct: 130 SESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEK 167
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 62.7 bits (153), Expect = 7e-11
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK--KR 52
R KTK +KK K KK K+ +KKE+EK+K K KK+ + K KR
Sbjct: 377 RPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKR 425
Score = 57.6 bits (140), Expect = 3e-09
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KT K KK K +KK+K+K+K K +++ + K K++K
Sbjct: 387 KTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 57.6 bits (140), Expect = 3e-09
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
E + KK K+ E+K+K+K+K K K+ + K K++K
Sbjct: 385 EKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 56.9 bits (138), Expect = 6e-09
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ K KK K+ EKK+K+K+K K ++ + K K++K
Sbjct: 385 EKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 43.0 bits (102), Expect = 2e-04
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K K +KK K KK K+ +KK+K+K+K K +
Sbjct: 379 KTKAPSEKKTGKPSKKVL-AKRAEKKEKEKEKPKVKK 414
Score = 38.4 bits (90), Expect = 0.004
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKK 38
L R + K+K+K+K K +++ + K K+ +
Sbjct: 396 LAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 38.4 bits (90), Expect = 0.005
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEE 35
E + K K+K K KK+ + K K++K
Sbjct: 401 EKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTS 432
Score = 35.7 bits (83), Expect = 0.034
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEK 36
+ +K K KK+ ++ K K++K E+
Sbjct: 406 EKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 33.4 bits (77), Expect = 0.19
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+E + K K +K+ K KK K+ +KK+K
Sbjct: 374 DELRPKTKAPSEKKTGKPSKKVLAKRAEKKEK 405
>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database
nomenclature), also referred to as the papain family;
composed of two subfamilies of cysteine peptidases
(CPs), C1A (papain) and C1B (bleomycin hydrolase).
Papain-like enzymes are mostly endopeptidases with some
exceptions like cathepsins B, C, H and X, which are
exopeptidases. Papain-like CPs have different functions
in various organisms. Plant CPs are used to mobilize
storage proteins in seeds while mammalian CPs are
primarily lysosomal enzymes responsible for protein
degradation in the lysosome. Papain-like CPs are
synthesized as inactive proenzymes with N-terminal
propeptide regions, which are removed upon activation.
Bleomycin hydrolase (BH) is a CP that detoxifies
bleomycin by hydrolysis of an amide group. It acts as a
carboxypeptidase on its C-terminus to convert itself
into an aminopeptidase and peptide ligase. BH is found
in all tissues in mammals as well as in many other
eukaryotes. It forms a hexameric ring barrel structure
with the active sites imbedded in the central channel.
Some members of the C1 family are proteins classified as
non-peptidase homologs which lack peptidase activity or
have missing active site residues.
Length = 223
Score = 60.2 bits (146), Expect = 1e-10
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 80 IYEHGPLVAIFSVYADFLQYKSG------VYQHNFGDSIGLHAVRVLGWGVEN--DIPYW 131
+ + GP+VA F VY+ F + K G VY +G HAV ++G+ +
Sbjct: 132 LAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAF 191
Query: 132 LVANSWNDHWGDHGTFKI 149
+V NSW WGD+G +I
Sbjct: 192 IVKNSWGTDWGDNGYGRI 209
Score = 52.1 bits (125), Expect = 8e-08
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 6/82 (7%)
Query: 208 DQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIV-----ACTPNCWGCNGGWPQL 262
+Q + GSCWA + A A+ I +S Q++ C C+GG P
Sbjct: 14 NQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLS 73
Query: 263 AWR-FWGHNGVVTGGDYNSQEG 283
A G+ DY
Sbjct: 74 ALLKLVALKGIPPEEDYPYGAE 95
>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional.
Length = 348
Score = 56.2 bits (135), Expect = 8e-09
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 82 EHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSWNDHW 141
++GP ++I + F+ Y SGV G+ + H V ++G+ + ++PYW++ NSW + W
Sbjct: 257 KNGP-ISIAVDASSFMSYHSGVLTSCIGEQLN-HGVLLVGYNMTGEVPYWVIKNSWGEDW 314
Query: 142 GDHGTFKILRGENE 155
G+ G ++ G N
Sbjct: 315 GEKGYVRVTMGVNA 328
Score = 48.9 bits (116), Expect = 2e-06
Identities = 33/104 (31%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 188 PRNFDAREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVA 247
P D REK P + +Q CGSCWA S I + +A + +S Q +V+
Sbjct: 127 PDAVDWREKGAVTP----VKNQGACGSCWAFSAVGNIESQWAVAGHKLVR--LSEQQLVS 180
Query: 248 CTPNCWGCNGGWPQLA--WRFWGHNGVV-TGGDYNSQEGCQPYT 288
C GC GG A W NG V T Y PY
Sbjct: 181 CDHVDNGCGGGLMLQAFEWVLRNMNGTVFTEKSY-------PYV 217
>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional.
Length = 548
Score = 55.3 bits (133), Expect = 2e-08
Identities = 35/110 (31%), Positives = 45/110 (40%), Gaps = 32/110 (29%)
Query: 77 MRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGL---------------------- 114
+ +IY HGP+ A SVYA+ Y N + +
Sbjct: 347 IWEIYRHGPVPA--SVYANSDWYNC---DENSTEDVRYVSLDDYSTASADRPLRHYFASN 401
Query: 115 --HAVRVLGWGV-ENDIPYWLVANSWNDH--WGDHGTFKILRGENEADIE 159
H V ++GWG EN YWLV + W W D GT KI RG N +IE
Sbjct: 402 VNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARGVNAYNIE 451
Score = 46.4 bits (110), Expect = 1e-05
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 187 LPRNFDAREK-----WPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASN-----GYF 236
P + + P P C S + + A+ R+ +ASN G
Sbjct: 205 PPAAWSWGDVGGASFLPAAPPASP---GRGCNSSYVEAALAAMMARVMVASNRTDPLGQQ 261
Query: 237 TGQISAQHIVACTPNCWGCNGGWPQLAWRFWGHNGVVTGGDY 278
T +SA+H++ C+ GC GG+P+ +F G++T Y
Sbjct: 262 T-FLSARHVLDCSQYGQGCAGGFPEEVGKFAETFGILTTDSY 302
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 51.4 bits (124), Expect = 5e-08
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
K+E K +K +KK E+ K K +KKK KK++ K RL+
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPRLF 100
Score = 44.8 bits (107), Expect = 9e-06
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKK 40
K K +K +KK EK K K +KKK ++E+ K +
Sbjct: 66 KELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 39.4 bits (93), Expect = 5e-04
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKK 39
LK +K +KK +K K K +KKK K+EE K +
Sbjct: 68 LKAWEKAEKKAEKA--KAKAEKKKAKKEEPKPR 98
Score = 39.0 bits (92), Expect = 8e-04
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 15/66 (22%)
Query: 10 KKKKKKKKKK-------EEKKKKKK--------KKKKKEEEKKKKKKKKKKKKKKKKRLY 54
+KKK KK + EE K K+ KK+ K EK +KK +K K K +KK+
Sbjct: 32 AQKKKGKKGELEITDLNEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAK 91
Query: 55 LPTSIP 60
P
Sbjct: 92 KEEPKP 97
Score = 37.5 bits (88), Expect = 0.003
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKK 32
K +KK +K K K EKKK KK++ K
Sbjct: 71 WEKAEKKAEKAKAKAEKKKAKKEEPKP 97
Score = 29.0 bits (66), Expect = 1.9
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKK 30
E K +K K K +K++ KK++ K +
Sbjct: 71 WEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional.
Length = 448
Score = 53.5 bits (129), Expect = 5e-08
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 84 GPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIP--YWLVANSWNDHW 141
P V +V + L+YKSGVY G S+ HAV ++G G + YW++ NSW W
Sbjct: 358 SPTVVYIAVSRELLKYKSGVYNGECGKSLN-HAVLLVGEGYDEKTKKRYWIIKNSWGTDW 416
Query: 142 GDHGTFKILR 151
G++G ++ R
Sbjct: 417 GENGYMRLER 426
Score = 46.2 bits (110), Expect = 1e-05
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 197 WPECPSLRHIADQS-NCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVACTPNCWGC 255
W ++ + DQ NCGSCWA S ++ I + + +S Q +V C GC
Sbjct: 240 WRRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYRDK--SVDLSEQELVNCDTKSQGC 297
Query: 256 NGGWPQLAWRFWGHNGVVTGGDYNSQEGCQPYT 288
+GG+P A + + G+ + D PY
Sbjct: 298 SGGYPDTALEYVKNKGLSSSSDV-------PYL 323
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 53.4 bits (129), Expect = 7e-08
Identities = 25/42 (59%), Positives = 31/42 (73%), Gaps = 3/42 (7%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K K K KKK+EEKK +K+KKKKK +KKK KK+KKK +K
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKK---RKKKGKKRKKKGRK 414
Score = 52.7 bits (127), Expect = 1e-07
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K+K K KKK+++KK +K ++KKK+KKK KK+KKK ++
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 51.5 bits (124), Expect = 2e-07
Identities = 23/43 (53%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 12 KKKKKKKKEEKKKK--KKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K++ K+ EE K+K K KKK+EE+K +K+KKKKK+KKK K+
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKK 407
Score = 51.5 bits (124), Expect = 3e-07
Identities = 22/42 (52%), Positives = 31/42 (73%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K++ K+ +E K+K K KKK EEKK +K+KKKKK+KKK +
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGK 406
Score = 49.2 bits (118), Expect = 1e-06
Identities = 21/43 (48%), Positives = 33/43 (76%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K+ ++ K+K + KKK+++KK ++ KKKKK+KKK KK+KKK
Sbjct: 370 KRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKG 412
Score = 37.3 bits (87), Expect = 0.010
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKE 33
R + K +K+KKKKK +KK KK+KKK ++
Sbjct: 387 REEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 36.9 bits (86), Expect = 0.011
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEE 35
+ + +KK +K+KKK+++KKK KK+KKK +
Sbjct: 385 KKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 31.9 bits (73), Expect = 0.54
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKK 29
E + + +KKKKK+KKK +K+KKK +K
Sbjct: 389 EKKPQKRKKKKKRKKKGKKRKKKGRK 414
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 50.0 bits (120), Expect = 9e-08
Identities = 17/48 (35%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 6 RLKTKKKKKKK--KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
R K KKKK+K+ KK+ + ++++ K+ EK+K+ +K ++KK K++
Sbjct: 77 REKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRR 124
Score = 49.6 bits (119), Expect = 1e-07
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ KKK+K+ KK + ++++ KE +K+K+ +K ++KK K+R
Sbjct: 80 EKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRR 124
Score = 47.3 bits (113), Expect = 8e-07
Identities = 13/47 (27%), Positives = 32/47 (68%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
E K K+K+ KK++ + ++++ K++ E++K+ +K ++KK K++
Sbjct: 78 EKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRR 124
Score = 42.6 bits (101), Expect = 3e-05
Identities = 13/45 (28%), Positives = 33/45 (73%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
L+ K+KKKK+K+ +K++ + +++ +++ +K+K+ +K ++KK
Sbjct: 76 LREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKK 120
Score = 41.5 bits (98), Expect = 9e-05
Identities = 13/49 (26%), Positives = 32/49 (65%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
+ ++K+KKKK+K KK++ + + E K++ +K+K+ +K +++ +
Sbjct: 73 KELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKF 121
Score = 40.7 bits (96), Expect = 1e-04
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
K + + ++++ +++ +K+K+ +K EKK K+++K+K+K
Sbjct: 91 KRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 39.2 bits (92), Expect = 5e-04
Identities = 12/44 (27%), Positives = 30/44 (68%), Gaps = 6/44 (13%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
R+ + ++++ K++ EK+K+ +K ++KK K+++K+K+K
Sbjct: 93 RIALRLRRERTKERAEKEKRTRK------NREKKFKRRQKEKEK 130
Score = 31.1 bits (71), Expect = 0.33
Identities = 12/33 (36%), Positives = 25/33 (75%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEK 36
R +TK++ +K+K+ + ++KK K+++KE+EK
Sbjct: 98 LRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 29.2 bits (66), Expect = 1.3
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKK 31
E + +K+K+ +K EKK K+++K+K
Sbjct: 100 RERTKERAEKEKRTRKNREKKFKRRQKEK 128
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 52.6 bits (127), Expect = 1e-07
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
L G K KK KK +K EKK++++KK+KK++ KKK+++++++K+K
Sbjct: 402 LTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEK 450
Score = 51.5 bits (124), Expect = 3e-07
Identities = 19/44 (43%), Positives = 35/44 (79%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
TKK KK +K E+K++++KK+KKK+ KKK+++++++K+KK
Sbjct: 408 ATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKK 451
Score = 50.3 bits (121), Expect = 7e-07
Identities = 19/45 (42%), Positives = 37/45 (82%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K +KK++++K+EKKKK KKKEEE++++K+KK+++K++++
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEE 460
Score = 50.3 bits (121), Expect = 8e-07
Identities = 16/44 (36%), Positives = 37/44 (84%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K +K +KK+++E+K+KKKK K++E++++++K+KK+++K++
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEE 457
Score = 49.9 bits (120), Expect = 8e-07
Identities = 15/45 (33%), Positives = 32/45 (71%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K KK KK E+ +KK++++KK++++K KKK+++++++K
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKE 449
Score = 49.9 bits (120), Expect = 1e-06
Identities = 18/45 (40%), Positives = 36/45 (80%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K KK +K +KK E++KK+KKKK +KK+++++++K+KK++++
Sbjct: 411 KIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Score = 49.1 bits (118), Expect = 2e-06
Identities = 16/45 (35%), Positives = 37/45 (82%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+K +K +KK++EEKK+KKKK ++++++++++K+KK+++K+
Sbjct: 412 IKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKE 456
Score = 48.4 bits (116), Expect = 3e-06
Identities = 18/49 (36%), Positives = 41/49 (83%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
++ ++ +KK++++KKE+KKK KKK+EEE+++K+KK+++K+++++
Sbjct: 412 IKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEE 460
Score = 48.0 bits (115), Expect = 4e-06
Identities = 18/44 (40%), Positives = 38/44 (86%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K KKK+++EE++K+KK+++K+EEE++ +++K+++++KKKK
Sbjct: 432 KKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 47.2 bits (113), Expect = 6e-06
Identities = 17/46 (36%), Positives = 39/46 (84%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K +KK++++KK+++KK KKK++EEE++K+KK+++K++++++
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEE 461
Score = 47.2 bits (113), Expect = 6e-06
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK K+ KK +K +KK+EEEKK+KKKK KKK++
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEE 443
Score = 46.8 bits (112), Expect = 9e-06
Identities = 17/48 (35%), Positives = 40/48 (83%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E + K KK KKK+EE++++K+KK++++EE++++ +++K+++++KK
Sbjct: 426 EKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473
Score = 46.5 bits (111), Expect = 1e-05
Identities = 18/45 (40%), Positives = 39/45 (86%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K KKK++EE+++K+KK+++KEEE+++ +++K+++++KKK+
Sbjct: 431 KKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 46.1 bits (110), Expect = 2e-05
Identities = 16/44 (36%), Positives = 37/44 (84%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK++++KK+K++K KKK+++EEE+K+KK+++K++++++
Sbjct: 419 AEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Score = 45.7 bits (109), Expect = 2e-05
Identities = 13/47 (27%), Positives = 39/47 (82%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ + ++KK+KKKK KKK++++++++E+K+++K++++++ +++K
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKE 467
Score = 45.3 bits (108), Expect = 3e-05
Identities = 18/46 (39%), Positives = 39/46 (84%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
KKK+++++EEK+KK+++K+++EEE +++K+++++KKKK+ L
Sbjct: 434 AFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQATL 479
Score = 44.5 bits (106), Expect = 4e-05
Identities = 15/50 (30%), Positives = 40/50 (80%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ + + K++++KK+KK++ KKK++++EEEK+KK+++K++++++ +
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Score = 44.5 bits (106), Expect = 4e-05
Identities = 15/51 (29%), Positives = 40/51 (78%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ + K +++KK+KKKK KKK++++++E+EKK+++K++++++ +++
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEE 465
Score = 44.5 bits (106), Expect = 5e-05
Identities = 12/48 (25%), Positives = 39/48 (81%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ + K+KKKK ++K+++++++K+K+EE+K++++++ +++K+++
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEE 469
Score = 44.1 bits (105), Expect = 7e-05
Identities = 14/49 (28%), Positives = 38/49 (77%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K +KKKK K+++++++++K+KKEEEK++++++ +++K++++
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEE 470
Score = 42.6 bits (101), Expect = 2e-04
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTS 58
KK KK KK +K +++ +++KK+KKKK KK+
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEE 446
Score = 30.3 bits (69), Expect = 1.5
Identities = 10/35 (28%), Positives = 23/35 (65%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
++E + KK K+ +K +K +KK++++KK++
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEK 430
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 50.5 bits (121), Expect = 3e-07
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPT 57
L+ + KKKK+ K K ++ KKKKKK K K + KKK ++ + PT
Sbjct: 78 LQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPT 132
Score = 39.3 bits (92), Expect = 0.001
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKK----KKKEEEKKKKKKKKKKKKKKKKRLYLPT 57
E RLK KK+ K K KE KKKKKK K + + KKK ++ L P
Sbjct: 81 EERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDSPR 138
Score = 38.1 bits (89), Expect = 0.004
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+K+ + E++ KKKK+ K + K+ KKKKKK K
Sbjct: 74 GEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSP 113
Score = 35.8 bits (83), Expect = 0.017
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 27/78 (34%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKK---------------------------E 33
+ RLK ++ ++KK + + +K+K+KKK+K+ E
Sbjct: 151 EATHERLKEREIRRKKIQAKARKRKEKKKEKELTQEERLAEAKETERINLKSLERYEEQE 210
Query: 34 EEKKKKKKKKKKKKKKKK 51
EEKKK K + KK++ +
Sbjct: 211 EEKKKAKIQALKKRRLYE 228
Score = 33.1 bits (76), Expect = 0.13
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIP 60
+KE +++++ KKKK+ K K K+ KKKKK+ P
Sbjct: 74 GEKELQREERLKKKKR----VKTKAYKEPTKKKKKKDPTAAKSP 113
Score = 33.1 bits (76), Expect = 0.14
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KKKKK + K + KKK E ++K R
Sbjct: 101 KKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDSPRRKSSR 143
Score = 33.1 bits (76), Expect = 0.16
Identities = 12/46 (26%), Positives = 16/46 (34%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K KKKK K K + KKK E ++K +
Sbjct: 99 TKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDSPRRKSSRS 144
Score = 32.7 bits (75), Expect = 0.21
Identities = 11/39 (28%), Positives = 26/39 (66%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
R T + K+ ++ ++++ ++KK + + K+K+KKK+K
Sbjct: 143 RSSTVQNKEATHERLKEREIRRKKIQAKARKRKEKKKEK 181
Score = 32.7 bits (75), Expect = 0.21
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
+ K+ E+ K+++ ++KK + K +K+K+KKK+K
Sbjct: 147 VQNKEATHERLKEREIRRKKIQAKARKRKEKKKEK 181
Score = 31.6 bits (72), Expect = 0.48
Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 33/84 (39%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKK------------------------------ 31
E K KKK K + + KKK
Sbjct: 95 YKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDSPRRKSSRSSTVQNKEATH 154
Query: 32 ---KEEEKKKKKKKKKKKKKKKKR 52
KE E ++KK + K +K+K+K+
Sbjct: 155 ERLKEREIRRKKIQAKARKRKEKK 178
Score = 31.2 bits (71), Expect = 0.54
Identities = 11/33 (33%), Positives = 24/33 (72%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
EE +K+ +++++ +++K+ K K K+ KKKK+
Sbjct: 72 EEGEKELQREERLKKKKRVKTKAYKEPTKKKKK 104
Score = 30.4 bits (69), Expect = 1.0
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
+ K+ ++ K+++ ++K+ + K +K+K+KKK+K
Sbjct: 147 VQNKEATHERLKEREIRRKKIQAKARKRKEKKKEK 181
Score = 30.4 bits (69), Expect = 1.1
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
L+ + + + KE ++ K+++ + ++ + K +K+K+KKK+K
Sbjct: 134 LDSPRRKSSRSSTVQNKEATHERLKEREIRRKKIQAKARKRKEKKKEK 181
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 49.3 bits (118), Expect = 4e-07
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLS 62
E + K K KKKK KKK++K K KK KK ++ +KK +K+ + K + + Y T LS
Sbjct: 78 YEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLS 137
Score = 47.0 bits (112), Expect = 2e-06
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
++ + K+K K KKKK +KKK K K KK +++ K +KK +K+ + K
Sbjct: 73 KVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLE 123
Score = 45.5 bits (108), Expect = 7e-06
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSH 63
+ KKK KKKK K++ KK KK K E++ +K+ + K + K L T L
Sbjct: 82 QKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELKP 141
Score = 44.3 bits (105), Expect = 2e-05
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K KK+ ++K++ K KKKK KKKK+++K KK KK K +KK
Sbjct: 69 EEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDE 115
Score = 35.1 bits (81), Expect = 0.022
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
KK KK K EKK +K+ + K E+ K + + K R Y
Sbjct: 100 DKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELKPRKY 144
Score = 31.2 bits (71), Expect = 0.44
Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 7/40 (17%)
Query: 19 KEEKKKKKKK-------KKKKEEEKKKKKKKKKKKKKKKK 51
+ + KKKKK K KKE E+K+K K KKKK KKKK
Sbjct: 56 EYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKK 95
Score = 31.2 bits (71), Expect = 0.53
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K KK KK K E+K +K+ + K ++ K + + K ++
Sbjct: 99 KDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELKPRK 143
Score = 30.0 bits (68), Expect = 1.2
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
K K +KK +KE + K + K E + K +K K +Y
Sbjct: 105 KKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELKPRKYALHKDIY 151
>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional.
Length = 489
Score = 49.8 bits (119), Expect = 1e-06
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 190 NFD-AREKWPECPSLRHIADQSNCGSCWAVSVANAISDRLCIASNGYFTGQISAQHIVAC 248
FD A+ W + + DQ NCGSCWA S + + I N + +S Q +V C
Sbjct: 264 TFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVS--LSEQELVDC 321
Query: 249 TPNCWGCNGGWPQLA 263
+ GC GG A
Sbjct: 322 SFKNNGCYGGLIPNA 336
Score = 41.3 bits (97), Expect = 5e-04
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 84 GPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIP----------YWLV 133
GP+ +V DF YK G++ G+ HAV ++G+G+E Y+++
Sbjct: 392 GPISVSIAVSDDFAFYKGGIFDGECGEEPN-HAVILVGYGMEEIYNSDTKKMEKRYYYII 450
Query: 134 ANSWNDHWGDHGTFKILRGEN 154
NSW + WG+ G +I EN
Sbjct: 451 KNSWGESWGEKGFIRIETDEN 471
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 49.5 bits (119), Expect = 1e-06
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+KK +KK++K EKK +K++ +K +KK + KK K +
Sbjct: 411 RKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGE 452
Score = 48.0 bits (115), Expect = 4e-06
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+S R K +KK++K +KK EK++ +K KK+ E KK K + KK
Sbjct: 406 LSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 46.8 bits (112), Expect = 9e-06
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
++KK +K++K +KK +KEE +K KKK + KK +
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAK 447
Score = 45.7 bits (109), Expect = 2e-05
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK +KK++K E+K +K++ +K ++K + KK K + +
Sbjct: 412 KKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETK 454
Score = 45.3 bits (108), Expect = 3e-05
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
++KK +++++K +KK +K+E EK KKK + KK K
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKG 448
Score = 31.8 bits (73), Expect = 0.58
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K E ++++ + E+KK +KK++K +KK ++
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEK 427
Score = 31.1 bits (71), Expect = 0.98
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K + E+++ + E KK +KK++K +KK +K
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEK 427
Score = 28.4 bits (64), Expect = 7.3
Identities = 10/47 (21%), Positives = 27/47 (57%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+L K + +++E + ++K+ KK++K +KK +K++ ++
Sbjct: 386 KLHDKPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEK 432
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 48.4 bits (116), Expect = 2e-06
Identities = 14/45 (31%), Positives = 33/45 (73%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ +K K +++EE+K K +++++EE ++KK++KKK++++ K
Sbjct: 256 EVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKL 300
Score = 46.9 bits (112), Expect = 6e-06
Identities = 15/54 (27%), Positives = 34/54 (62%), Gaps = 8/54 (14%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKK--------KKKKKKKKKKKKKR 52
+ K +++++EE ++KK++KKK+E E K +K ++K++KK+ ++
Sbjct: 269 EEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 41.9 bits (99), Expect = 2e-04
Identities = 13/41 (31%), Positives = 29/41 (70%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
E + K++KKK++++ + K ++++K EEK++KK+ +K
Sbjct: 282 EEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 41.1 bits (97), Expect = 4e-04
Identities = 17/45 (37%), Positives = 32/45 (71%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
E R + ++KK++KKKEE++ K K +E+ K ++K++KK+ +K
Sbjct: 278 EERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 40.7 bits (96), Expect = 6e-04
Identities = 12/49 (24%), Positives = 37/49 (75%), Gaps = 3/49 (6%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEE---EKKKKKKKKKKKKKKKK 51
+ ++++++ ++K+E+KKK++++ K + E+++K ++K++KK+ +K
Sbjct: 274 KAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 37.6 bits (88), Expect = 0.006
Identities = 13/56 (23%), Positives = 36/56 (64%), Gaps = 8/56 (14%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK--------KKKKKKKKKKRL 53
R + ++K K ++E +++ ++KK++K++E+++ K +K ++K++KK+
Sbjct: 265 REEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320
Score = 30.7 bits (70), Expect = 0.94
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 11/51 (21%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKK-----------KKKKKKKKKKKKRL 53
K E +K K +++EEEK K +KK++KKK++++
Sbjct: 249 ANLKLSPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAK 299
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 45.7 bits (109), Expect = 2e-06
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ +K K +KK++E+K + +K K EEK + + +K +K+ ++
Sbjct: 16 AIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELE 62
Score = 41.5 bits (98), Expect = 7e-05
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 3 LEGRLKTKKKKKKKKKKEEKK-KKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
+ +KK+++KK E +K K ++K E E +K +K+ ++ + + R L
Sbjct: 17 IAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARREL 70
Score = 39.9 bits (94), Expect = 3e-04
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E + T K+ K KE+ K +KK+++KK E +K K ++K + +
Sbjct: 4 EEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYEL 51
Score = 38.8 bits (91), Expect = 8e-04
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K++ +K K EEK + + +K +KE E+ + + +++ K + K
Sbjct: 32 KSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAK 75
Score = 36.9 bits (86), Expect = 0.003
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ +++K +++ K K+K + EKK+++KK + +K K
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAK 40
Score = 36.9 bits (86), Expect = 0.003
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+ +++K +E K K+K K E+K+++KK + +K K
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAK 40
Score = 36.1 bits (84), Expect = 0.006
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ +++K +K+ K K+K + +KK+++KK + +K K
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKM 41
Score = 34.9 bits (81), Expect = 0.017
Identities = 8/45 (17%), Positives = 25/45 (55%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K + +K K E+K + + +K ++E ++ + + +++ K + +
Sbjct: 31 KKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAK 75
Score = 34.5 bits (80), Expect = 0.017
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ +K K+ + K+K K +KK+EEKK + +K K ++K
Sbjct: 3 EEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKA 47
Score = 34.5 bits (80), Expect = 0.020
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+++K KE K K+K K E+++++KK + +K K
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSA 43
Score = 33.0 bits (76), Expect = 0.063
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
++K K+ ++ K+K K +K++E+KK + +K K +++
Sbjct: 2 PEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEK 46
Score = 33.0 bits (76), Expect = 0.071
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K ++K + E +K +K+ ++ + E +++ K + KK +K L
Sbjct: 40 KMSAEEKAEYELEKLEKELEELEAELARRELKAEAKKMLSEKGL 83
Score = 33.0 bits (76), Expect = 0.077
Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSI 59
+L ++K + + EK +K+ ++ + E +++ K + KK +K LP +
Sbjct: 37 KLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKKMLSEKG---LPVEL 87
Score = 31.1 bits (71), Expect = 0.35
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ ++E+ K+ K +EK K +KK+++KK + ++L
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKL 38
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 48.3 bits (115), Expect = 3e-06
Identities = 20/49 (40%), Positives = 37/49 (75%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
E + ++ K++KKKK+EK K++ K +K +EE K+K+ K+K+K+K+K+
Sbjct: 105 EEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKK 153
Score = 47.6 bits (113), Expect = 5e-06
Identities = 17/45 (37%), Positives = 34/45 (75%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
++KKKKK+K +E+ K +K K++ +E++ K+K+K+K+KK ++
Sbjct: 113 VKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEP 157
Score = 47.6 bits (113), Expect = 5e-06
Identities = 18/49 (36%), Positives = 36/49 (73%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ +++K+K++ KEEKKKKK+K K++ +++K K++ K+K+ K+K
Sbjct: 99 KNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKE 147
Score = 47.6 bits (113), Expect = 5e-06
Identities = 22/45 (48%), Positives = 34/45 (75%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K +KKKKK+K KEE K +K K++ KE+ K+K+K+K+KK ++ R
Sbjct: 114 KEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPR 158
Score = 47.2 bits (112), Expect = 6e-06
Identities = 18/44 (40%), Positives = 34/44 (77%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K + K+++KE+++ K++KKKKKE+ K++ K +K K++ K+KR
Sbjct: 98 PKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKR 141
Score = 47.2 bits (112), Expect = 7e-06
Identities = 22/45 (48%), Positives = 35/45 (77%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K + K++KKKKKE+ K++ K +K KEE K+K+ K+K+K+K+KK
Sbjct: 110 KEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKV 154
Score = 46.8 bits (111), Expect = 1e-05
Identities = 19/49 (38%), Positives = 34/49 (69%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
E + KKKKK+K K+E K +K K++ K++ K+K+K+K+KK ++ +
Sbjct: 111 EQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRD 159
Score = 46.4 bits (110), Expect = 1e-05
Identities = 18/47 (38%), Positives = 36/47 (76%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ + K++KKKKK+K +++ K +K K++ +EK+ K+K+K+K+KK +
Sbjct: 109 EKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVE 155
Score = 46.0 bits (109), Expect = 2e-05
Identities = 19/48 (39%), Positives = 35/48 (72%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E + K++KKKKK++ K++ K +K K+E ++K+ K+K+K+K+KK
Sbjct: 107 EKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKV 154
Score = 45.6 bits (108), Expect = 3e-05
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K K+ K E K+++K+K++ +EEKKKKK+K K++ K +K
Sbjct: 89 AAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKP 133
Score = 44.9 bits (106), Expect = 4e-05
Identities = 18/47 (38%), Positives = 31/47 (65%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
G K K K K+ + + K+++K+KE+ K++KKKKK+K K++ K
Sbjct: 83 GGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPK 129
Score = 44.5 bits (105), Expect = 5e-05
Identities = 16/51 (31%), Positives = 35/51 (68%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K K + K++++EK++ K++KKKK+E+ K++ K +K K++ K++
Sbjct: 90 AKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEK 140
Score = 44.5 bits (105), Expect = 5e-05
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPT 57
E K K KE K + K+++K++E+ K++KKKKK+K K++ + P
Sbjct: 81 EKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPK 134
Score = 43.7 bits (103), Expect = 8e-05
Identities = 17/45 (37%), Positives = 36/45 (80%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K ++K+K++ K+E+KKKK+K K++ ++ K K++ K+K+ K+K++
Sbjct: 104 KEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEK 148
Score = 43.0 bits (101), Expect = 2e-04
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K K+KK ++ + E++KK+++ + K KK KKK KKK+
Sbjct: 148 KEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEP 190
Score = 41.8 bits (98), Expect = 4e-04
Identities = 16/45 (35%), Positives = 33/45 (73%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K+K+ K+K++EK+KK ++ + +EEEKK+++ + K + KK +
Sbjct: 136 EAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPK 180
Score = 41.8 bits (98), Expect = 4e-04
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
E + +KK ++ + +EE+KK+++ + K +K KKK KKK+ +
Sbjct: 145 EKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEE 193
Score = 41.4 bits (97), Expect = 5e-04
Identities = 14/46 (30%), Positives = 33/46 (71%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K+ K+K+K++EKK ++ + +++E+++++ + K + KK KK+
Sbjct: 137 AKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKK 182
Score = 41.0 bits (96), Expect = 8e-04
Identities = 15/45 (33%), Positives = 31/45 (68%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K+K+ K+KE++K+KK ++ + EE+KK+++ + K + KK
Sbjct: 135 EEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPP 179
Score = 40.3 bits (94), Expect = 0.001
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ +K K + K K+ K + +EE+K+K++ K++KKKKK++
Sbjct: 79 RVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEK 123
Score = 40.3 bits (94), Expect = 0.001
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
R++ K K + K+ K + K+EE++K++ K++KKKKK+K +
Sbjct: 79 RVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPK 125
Score = 40.3 bits (94), Expect = 0.001
Identities = 13/47 (27%), Positives = 31/47 (65%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K+ K + +E++K+K++ K+++++KK+K K++ K +K K+
Sbjct: 91 KTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Score = 39.9 bits (93), Expect = 0.002
Identities = 15/49 (30%), Positives = 35/49 (71%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ + K + K+K+ K++EK+K+KK ++ ++ E++KK+++ + K + KK
Sbjct: 130 DRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKP 178
Score = 39.5 bits (92), Expect = 0.002
Identities = 16/48 (33%), Positives = 36/48 (75%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ + K K++ K +K KEE K+K+ K+K++E++KK ++ + ++++KK+
Sbjct: 119 KKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKR 166
Score = 39.5 bits (92), Expect = 0.002
Identities = 13/45 (28%), Positives = 34/45 (75%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K +K K++ +EK+ K+K+K+KE++ ++ + ++++KK+++ R
Sbjct: 126 EEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVR 170
Score = 39.5 bits (92), Expect = 0.002
Identities = 16/51 (31%), Positives = 32/51 (62%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ + K+K+K+K+KK E+ + ++++KK+E + K + KK KKK +
Sbjct: 136 EAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNK 186
Score = 38.3 bits (89), Expect = 0.005
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
R + KK+++ + K KK KKK K++E +++K+++ ++ K
Sbjct: 160 REEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKG 206
Score = 37.9 bits (88), Expect = 0.006
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ + K + KK KKK KKK+ EE+K+++ ++ K K +
Sbjct: 168 RVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEE 210
Score = 37.6 bits (87), Expect = 0.007
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K+ +K K K K K+ K E K+++K+K++ K++KK+
Sbjct: 78 KRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKK 119
Score = 37.6 bits (87), Expect = 0.008
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K + KK +KK KKK+ EEEK+++ ++ K K ++
Sbjct: 168 RVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEP 211
Score = 37.6 bits (87), Expect = 0.008
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
R + + K + KK ++K KKK+ +EE++++ ++ K K +
Sbjct: 166 RERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPE 209
Score = 37.6 bits (87), Expect = 0.009
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K+ +K K K K K+ K E K+++K+K++ K++KKK+
Sbjct: 78 KRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKK 120
Score = 37.2 bits (86), Expect = 0.010
Identities = 16/44 (36%), Positives = 33/44 (75%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K +K K++ K+K K+K+K+K+KK EE + ++++KK+++ + K
Sbjct: 129 KDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAK 172
Score = 36.8 bits (85), Expect = 0.016
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKK-------KEEEKKKKKKKKKKKKKKKKR 52
+ R ++ K+K+ KE++K+K+KK ++ K+ E+ + K + KK KKK
Sbjct: 129 KDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPP 184
Score = 36.4 bits (84), Expect = 0.022
Identities = 16/47 (34%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 9 TKKKKKKKKKKEEKKKKKK---KKKKKEEEKKKKKKKKKKKKKKKKR 52
K +K K++ KE++ K+K K+KK EE + ++++KK+++ + K R
Sbjct: 128 PKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSR 174
Score = 36.0 bits (83), Expect = 0.023
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K +++ + K + ++ KKK KKKE +++K+++ ++ K K
Sbjct: 162 EEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKP 208
Score = 35.6 bits (82), Expect = 0.030
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKK--KKEEEKKKKKKKKKKKKKKKK 51
+ K KK ++ + ++EEKK+++ + K K+ KKK KKK+ +++K
Sbjct: 147 EKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEK 195
Score = 34.5 bits (79), Expect = 0.068
Identities = 11/48 (22%), Positives = 31/48 (64%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E R + ++KK+++ + + + KK KKK ++K+ +++K+++ ++
Sbjct: 156 EPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREA 203
Score = 30.6 bits (69), Expect = 1.4
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K KKK KKKE +++K+++ +E K K ++ ++++K+
Sbjct: 177 KPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEE 221
Score = 29.1 bits (65), Expect = 3.7
Identities = 9/43 (20%), Positives = 25/43 (58%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K KKK+ +EEK+++ ++ K + ++ ++++K++
Sbjct: 181 KKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDD 223
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 46.4 bits (110), Expect = 3e-06
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 12/58 (20%)
Query: 7 LKTKKKKKKKKKKE------------EKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K K KK + ++ K +KK KKKK E+ K++KKKKK+KKKKKKR
Sbjct: 111 KKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKR 168
Score = 42.1 bits (99), Expect = 1e-04
Identities = 22/37 (59%), Positives = 27/37 (72%), Gaps = 4/37 (10%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK 43
LK +KK KKKK E+ K++KKKKK EKKKKKK+
Sbjct: 137 LKGHEKKHKKKKHEDDKERKKKKK----EKKKKKKRH 169
Score = 37.9 bits (88), Expect = 0.002
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKK 32
L+G K KKKK + KE KKKKK+KKKKK
Sbjct: 137 LKGHEKKHKKKKHEDDKERKKKKKEKKKKK 166
Score = 37.1 bits (86), Expect = 0.005
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEK 36
+ K KKKK + +E+KKKKK+KKKK++
Sbjct: 135 EGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 27.5 bits (61), Expect = 8.4
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 14/57 (24%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEE-------EKKKKKKKKKKK-------KKKKK 51
+ KKK K + KK + + EE K +KK KKKK KKKKK
Sbjct: 104 MHIQPPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKK 160
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation
factor 3 (eIF3). In yeast it is called Hcr1. The
Saccharomyces cerevisiae protein eIF3j (HCR1) has been
shown to be required for processing of 20S pre-rRNA and
binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 47.0 bits (112), Expect = 4e-06
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
++K+++K K K K KK K K EEK+K K++K++K ++
Sbjct: 43 EEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84
Score = 46.2 bits (110), Expect = 7e-06
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
++K+++K K K K KK K + E+K+K K++K++K ++
Sbjct: 42 DEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELE 85
Score = 44.3 bits (105), Expect = 4e-05
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+K+++K K + K KK K K EE++K K++K++K ++
Sbjct: 42 DEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84
Score = 43.5 bits (103), Expect = 6e-05
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ ++K++E+ K K K KK + K ++K+K K++K++K L
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGL 81
Score = 43.1 bits (102), Expect = 8e-05
Identities = 13/44 (29%), Positives = 29/44 (65%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ ++K+++K + K K KK K + ++K+K K++K++K + L
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84
Score = 42.7 bits (101), Expect = 1e-04
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
+ ++K+EEK K K K K+ K K ++K+K K++K+++
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGL 81
Score = 39.6 bits (93), Expect = 0.001
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
EE ++K+++K K + K KK K K ++K+K
Sbjct: 40 EEDEEKEEEKAKVAAKAKAKKALKAKIEEKEK 71
Score = 39.3 bits (92), Expect = 0.001
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
EE+ ++K+++K K K K KK K K ++K++
Sbjct: 39 EEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKA 72
Score = 37.7 bits (88), Expect = 0.005
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K KK K K E+K+K K++K+++ ++ ++ + + +K RL
Sbjct: 56 AKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRL 99
Score = 35.8 bits (83), Expect = 0.020
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+E++ ++K+++K + K K KK K K ++K
Sbjct: 38 DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEK 69
Score = 35.0 bits (81), Expect = 0.039
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K KK K K +++EK K++K++K E ++ + + +K + ++L
Sbjct: 57 KAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKL 102
Score = 33.1 bits (76), Expect = 0.16
Identities = 12/36 (33%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+K K EK K KKKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKG---KAKAKLNVGGANDDD 224
Score = 31.9 bits (73), Expect = 0.32
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 29 KKKKEEEKKKKKKKKKKKKKKKK 51
+K + EK K KKKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAK 214
Score = 31.2 bits (71), Expect = 0.64
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 30 KKKEEEKKKKKKKKKKKKKKKKRL 53
+K + +K K KKKK K K +L
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKL 215
Score = 30.4 bits (69), Expect = 1.0
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
+K K +K K KKKK K K +
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
Score = 30.4 bits (69), Expect = 1.0
Identities = 11/41 (26%), Positives = 26/41 (63%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
LK K ++K+K K+E+++K ++ ++ E + +K + +K
Sbjct: 61 ALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRK 101
Score = 28.1 bits (63), Expect = 6.0
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK 43
+K K +K + KKKK K K +
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
Score = 27.7 bits (62), Expect = 7.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKK 32
+K K +K + KKKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAK 214
Score = 27.3 bits (61), Expect = 9.7
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK 41
L +K K +K K KKKK K K K
Sbjct: 190 LINEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 45.4 bits (108), Expect = 5e-06
Identities = 22/40 (55%), Positives = 33/40 (82%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+K+++KK+K EEK KK+ K++K+++KKKKKKK KK KK
Sbjct: 70 QKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKK 109
Score = 45.0 bits (107), Expect = 7e-06
Identities = 21/43 (48%), Positives = 34/43 (79%), Gaps = 3/43 (6%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
++K+++KK+K+E+K KK+ K+ +KKK+KKKKKKK KK +
Sbjct: 69 QQKREEKKRKDEEKTAKKRAKR---QKKKQKKKKKKKAKKGNK 108
Score = 42.3 bits (100), Expect = 5e-05
Identities = 20/41 (48%), Positives = 34/41 (82%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+K KK+ + EE ++K+++KK+K+EEK KK+ K++KKK+KK
Sbjct: 57 EKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKK 97
Score = 40.8 bits (96), Expect = 2e-04
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
KT KK+ K++KK++KKKKKKK KK ++++K+ K
Sbjct: 82 KTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSS 118
Score = 37.7 bits (88), Expect = 0.002
Identities = 18/48 (37%), Positives = 38/48 (79%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
RL+ +K KK+ ++E+ ++K+++KK+++E+K KK+ K++KKK+K+
Sbjct: 51 RLELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKK 98
Score = 37.3 bits (87), Expect = 0.002
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
E + K ++K KK+ K +KKK+KKKKKKK ++ KK++K+ K
Sbjct: 74 EKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSS 118
Score = 35.4 bits (82), Expect = 0.015
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ K KKKKKKK KK KK++K+ K EE ++++ ++ K+++ +
Sbjct: 92 KKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEI 139
Score = 29.6 bits (67), Expect = 1.0
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K KKK KK KKEEK+ K ++ +EE++ ++ K+++ + ++
Sbjct: 96 KKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEIMEK 142
Score = 26.9 bits (60), Expect = 8.9
Identities = 11/47 (23%), Positives = 30/47 (63%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K KKKKK KK ++++K+ K ++ +++++ ++ K+++ +
Sbjct: 94 KQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEIM 140
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 47.4 bits (113), Expect = 6e-06
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYF-- 65
K KK KKE+K + KKK +K+++KKK+KK+ K + + K P +
Sbjct: 48 KVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPP 107
Query: 66 KKAHMVPRCNAMRQIYE 82
K NA +I E
Sbjct: 108 KPKPNEDVDNAFNKIAE 124
Score = 39.3 bits (92), Expect = 0.002
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+++ K KK KK+ K E KKK +KKKKKKK+KK
Sbjct: 39 LSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKK 81
Score = 39.3 bits (92), Expect = 0.002
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
L T +++ K KK KK+ K E +KK +KKKKKKK+KK+
Sbjct: 39 LSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEP 83
Score = 38.9 bits (91), Expect = 0.002
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 19/67 (28%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK-------------------KK 48
K K +KKKKKKKE+K+ K + + K + KK KK KKK
Sbjct: 67 KKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELA 126
Query: 49 KKKRLYL 55
+K +Y+
Sbjct: 127 EKSNVYI 133
Score = 34.7 bits (80), Expect = 0.066
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+++ K KK KK+ + + KKK +KKKKKKK+K+
Sbjct: 40 STFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKK 81
Score = 33.5 bits (77), Expect = 0.13
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K +++ + KK KK+++ + KKK +KKKKKKK+
Sbjct: 36 KEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKE 79
Score = 32.8 bits (75), Expect = 0.27
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
L + +++ + KK KKE++ + KKK +KKKKKKK
Sbjct: 34 LSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKK 78
Score = 30.1 bits (68), Expect = 2.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K+ EE+ K KK++++ K + KKK +KKKK+
Sbjct: 35 SKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKK 76
Score = 29.7 bits (67), Expect = 2.5
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
EG K K KK KK +KK K K + + K + +K
Sbjct: 86 EGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAEKSNVY 132
Score = 28.9 bits (65), Expect = 4.2
Identities = 9/48 (18%), Positives = 15/48 (31%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
G + K + K+ E++ K KK KK+
Sbjct: 13 SGTTQKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKE 60
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 44.5 bits (106), Expect = 7e-06
Identities = 17/39 (43%), Positives = 32/39 (82%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K + ++ K+EKKK+ K+KK++E+E+K++ K++KKK K +
Sbjct: 92 KLEHERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 44.2 bits (105), Expect = 1e-05
Identities = 22/51 (43%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKK--KKKKEEEKKKKKKKKKKKKKKKKR 52
+ + TK ++ K + E K++KKK K+KKEEEK++K++ K++KKK K R
Sbjct: 80 KPGISTKAQQALKLEHERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 36.5 bits (85), Expect = 0.005
Identities = 14/36 (38%), Positives = 27/36 (75%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKK 38
E + KKK+ K+KK+EEK++K++ K++K++ K +
Sbjct: 95 HERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 29.5 bits (67), Expect = 1.3
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKK--------KKEEEKKK---KKKKKKKKKKKKKRLYL 55
K KK K+ +++ K+ KK K E E+ K KK+ K+KK+++K+R
Sbjct: 61 KQKKINPKRLQRQAAKEVKKPGISTKAQQALKLEHERNKQEKKKRSKEKKEEEKERKRQ 119
Score = 29.1 bits (66), Expect = 1.7
Identities = 17/52 (32%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Query: 6 RLKTKKKKKKKKKKEEKKK----KKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
RL+ + K+ KK K K + ++ K+E+KK+ K+KK+++K++K++L
Sbjct: 69 RLQRQAAKEVKKPGISTKAQQALKLEHERNKQEKKKRSKEKKEEEKERKRQL 120
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 45.4 bits (108), Expect = 1e-05
Identities = 27/53 (50%), Positives = 36/53 (67%), Gaps = 7/53 (13%)
Query: 7 LKTKKKKKKKKKKE-------EKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
LK K+K+KKK KKE +KKK +++KK+EE KK+K KK KKKKK +
Sbjct: 148 LKRKEKQKKKSKKEWKERKEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAK 200
Score = 36.9 bits (86), Expect = 0.006
Identities = 17/50 (34%), Positives = 32/50 (64%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
LE R + ++++K +KK++ K+ KKK+ +K E ++ K ++ K KKK
Sbjct: 7 LLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAP 56
Score = 35.7 bits (83), Expect = 0.018
Identities = 26/60 (43%), Positives = 30/60 (50%), Gaps = 21/60 (35%)
Query: 14 KKKKKKEEKKKKKKKKK----------------KKEEE-----KKKKKKKKKKKKKKKKR 52
KK K++EK+KKK KK+ KK EE K KK KKKKK KKK R
Sbjct: 145 KKALKRKEKQKKKSKKEWKERKEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAKKKGR 204
Score = 34.6 bits (80), Expect = 0.040
Identities = 14/43 (32%), Positives = 33/43 (76%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
++++K++++K KK+K+K+ KKKE+ +K + ++ K ++ K K+
Sbjct: 10 QRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKK 52
Score = 33.8 bits (78), Expect = 0.083
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 4 EGRLKTKKKKKKKKKKEEKK------KKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+G K K KKKKK++K KK + +KKK EE + K + ++K+K +
Sbjct: 73 DGEQAKKDLKLKKKKKKKKTDYKQLLKKLEARKKKLEELDEDKAAEIEEKEKWTKA 128
Score = 33.4 bits (77), Expect = 0.10
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 7 LKTKKKKKKKKK--KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
LK KKKKKKKK K+ KK + +KKK EE + K + ++K+K K L
Sbjct: 81 LKLKKKKKKKKTDYKQLLKKLEARKKKLEELDEDKAAEIEEKEKWTKALA 130
Score = 33.4 bits (77), Expect = 0.10
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 6 RLKTKKKK------KKKKKKEEKKKKKKKKKKKEEEKKK------KKKKKKKKKKKKKR 52
+L+ +KKK K + EEK+K K K E K K KK K+K+K+KKK
Sbjct: 100 KLEARKKKLEELDEDKAAEIEEKEKWTKALAKAEGVKVKDDEKLLKKALKRKEKQKKKS 158
Score = 33.4 bits (77), Expect = 0.11
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
++ KK +++KK++E KK+K KK K KKKK KKK +
Sbjct: 169 VEKKKAERQKKREENLKKRKDDKKNK---KKKKAKKKGRIL 206
Score = 33.0 bits (76), Expect = 0.12
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
E K K +++KK+++ KK+K KK KK KKK KKK +
Sbjct: 167 EKVEKKKAERQKKREENLKKRKDDKKNKK---KKKAKKKGRIL 206
Score = 33.0 bits (76), Expect = 0.12
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
R K +++K +KK+K ++ KKK+ +K E E+ K ++ K KKK
Sbjct: 12 RRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPI 57
Score = 32.3 bits (74), Expect = 0.22
Identities = 11/53 (20%), Positives = 29/53 (54%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKKA 68
+E +++++K+++ + +KK+K+K+ KKK+ ++ + KK
Sbjct: 1 PSSREALLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKK 53
Score = 31.5 bits (72), Expect = 0.39
Identities = 14/46 (30%), Positives = 35/46 (76%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
L+ +++K++++K +K+K+K+ KKK++ +K + ++ K ++ K KK+
Sbjct: 8 LEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKK 53
Score = 30.7 bits (70), Expect = 0.78
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E R KK+K+K+ KK+E +K + ++ K EE K KKK + +
Sbjct: 16 EQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGN 63
Score = 30.4 bits (69), Expect = 0.98
Identities = 12/46 (26%), Positives = 28/46 (60%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K +KK+K+K+ K+++ +K + ++ + E+ K KKK + + +
Sbjct: 19 KARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGNI 64
Score = 29.6 bits (67), Expect = 2.1
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 9/55 (16%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK---------KKKKKKKKKR 52
K K + K K+++K KK K+KE++KKK KK+ KKK +++KKR
Sbjct: 126 TKALAKAEGVKVKDDEKLLKKALKRKEKQKKKSKKEWKERKEKVEKKKAERQKKR 180
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 46.4 bits (110), Expect = 1e-05
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
L+ + +K K+ E+ K+ ++K+K+ E+ K K+ + K K +
Sbjct: 93 ELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEA 138
Score = 45.6 bits (108), Expect = 2e-05
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K K + + EKK K++ KK+ EEE K K + KKK + +
Sbjct: 130 AEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAK 172
Score = 45.2 bits (107), Expect = 2e-05
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E + K + K K + E +KK K++ KK+ EE+ K K + KKK +
Sbjct: 123 EAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAE 170
Score = 43.3 bits (102), Expect = 1e-04
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKK--KKKKEEEKKKKKKKKKKKKKKKKR 52
E + K K++ KK+ EE+ K K KKK E KKK + + K K + K
Sbjct: 137 EAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKA 187
Score = 41.0 bits (96), Expect = 6e-04
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K K + KKK E KKK + + K + E K K K ++ K K +
Sbjct: 157 KAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAE 199
Score = 40.6 bits (95), Expect = 7e-04
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K +++ K K E KKK + KKK E + K K + K K K
Sbjct: 150 KQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAK 190
Score = 39.4 bits (92), Expect = 0.002
Identities = 7/45 (15%), Positives = 29/45 (64%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ ++ +K++ E+ ++K+ +++ E+ K+ ++ K+ ++K++
Sbjct: 75 QQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQK 119
Score = 39.4 bits (92), Expect = 0.002
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E + K + + K K + + K K ++ K K E K K + K + +
Sbjct: 170 EAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEA 217
Score = 39.4 bits (92), Expect = 0.002
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 3 LEGRLKTKKKKKK----KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
LE R +K K+ K+ EEK+K+ ++ K K+ + K K + + +KK K
Sbjct: 94 LEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAK 145
Score = 39.0 bits (91), Expect = 0.003
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K K + KKK + E K K + K K + E+ K K + K K
Sbjct: 165 KKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAA 207
Score = 38.7 bits (90), Expect = 0.003
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
E + K + + +KK K+E KK+ +++ K K + KKK + KKK + +
Sbjct: 131 EAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEA 179
Score = 38.7 bits (90), Expect = 0.003
Identities = 9/48 (18%), Positives = 31/48 (64%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ KK+++++KK E++ ++ +K++ E+ ++K+ +++ +K +
Sbjct: 58 QKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAK 105
Score = 38.3 bits (89), Expect = 0.004
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K+ ++K+K+ EE K K+ + K + E + +KK K++ KK+
Sbjct: 112 KQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQ 151
Score = 38.3 bits (89), Expect = 0.004
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
E + KKK E KKK + + K K E K K K ++ K K +
Sbjct: 154 EEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAE 199
Score = 37.9 bits (88), Expect = 0.005
Identities = 8/40 (20%), Positives = 25/40 (62%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
+ ++ ++ ++KE +++ +K K+ E+ K+ ++K+K
Sbjct: 80 AEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQK 119
Score = 37.1 bits (86), Expect = 0.008
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 8 KTKKKKKKKKKKEEKKKKK-----KKKKKKEEEKKKKKKKKKKKKKKKK 51
+ K+ ++K+K+ E+ K K K K + E EKK K++ KK+ +++ K
Sbjct: 109 QAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAK 157
Score = 37.1 bits (86), Expect = 0.009
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 10 KKKKKKKKKKEEKKKKKK--KKKKKEEEKKKK----KKKKKKKKKKKKR 52
KK + KKK E + K K K K K EE K K K K + K
Sbjct: 166 KKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAE 214
Score = 37.1 bits (86), Expect = 0.010
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K + +++ K K + KKK + KK+ E + K K + K K K
Sbjct: 148 AKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAK 190
Score = 37.1 bits (86), Expect = 0.010
Identities = 9/45 (20%), Positives = 27/45 (60%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K+ +++ ++ K+ ++ K+ EE++K+ ++ K K+ + K
Sbjct: 90 RQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKA 134
Score = 36.4 bits (84), Expect = 0.015
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K + KKK + KKK + + K + + K K K ++ K K +
Sbjct: 156 AKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAE 199
Score = 36.0 bits (83), Expect = 0.020
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K + K K K EE K K + K K + K + +
Sbjct: 180 KAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAA 223
Score = 35.6 bits (82), Expect = 0.028
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKK-----KKKKKKKKKKKK 51
+ ++K+ +++ EK K+ ++ K+ E+K+K K K+ + K K
Sbjct: 88 QARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKA 136
Score = 35.6 bits (82), Expect = 0.032
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKK----KKKKKEEEKKK---KKKKKKKKKKKKKR 52
+ K K+ ++ K K+ + K K +KK KEE KK+ + K K + KKK
Sbjct: 112 KQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKA 168
Score = 34.8 bits (80), Expect = 0.049
Identities = 10/50 (20%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKE-----EEKKKKKKKKKKKKKKKKR 52
+ + +++ +K K+ ++ K+ +E EE K K+ + K K + +
Sbjct: 91 QKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEA 140
Score = 34.4 bits (79), Expect = 0.064
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 8 KTKKKKKKKKKKE-EKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K + + K K E + K K ++ K K E K K + K + +
Sbjct: 172 KKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEA 217
Score = 34.0 bits (78), Expect = 0.085
Identities = 8/46 (17%), Positives = 29/46 (63%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ + KK +++ ++ E+++ ++ ++K+ E++ +K K+ ++ K
Sbjct: 67 QERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAK 112
Score = 34.0 bits (78), Expect = 0.11
Identities = 10/43 (23%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK---KKKKK 49
++ ++K+ E++ +K K+ E+ K+ ++K+K + K K
Sbjct: 85 AAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAK 127
Score = 30.2 bits (68), Expect = 1.6
Identities = 10/40 (25%), Positives = 29/40 (72%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
+++KK KK+++++KK E++ ++ +K++ ++ ++K L
Sbjct: 56 QQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELE 95
Score = 29.8 bits (67), Expect = 1.9
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K K ++ K K + K K + K E + + ++K
Sbjct: 188 KAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERK 228
Score = 28.3 bits (63), Expect = 6.2
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 8 KTKKKKKKKKKKEEKKKKKKK---KKKKEEEKKKKKKKKKKKK 47
K K K ++ K K E K K K E E + ++K
Sbjct: 186 KAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERK 228
Score = 27.9 bits (62), Expect = 8.8
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSH 63
K ++ K K E K K + + E + + ++K L L+
Sbjct: 190 KAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERKADEAELGDIFGLAS 242
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 44.4 bits (105), Expect = 1e-05
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
+T+++ + K E K+KKK++ K + EK+K K + KK K K +LY
Sbjct: 108 ETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPKLY 154
Score = 38.6 bits (90), Expect = 0.001
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLP 56
+ +++ E K + K+KKK+E K K +K+K K + KK + P
Sbjct: 108 ETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKP 151
Score = 38.2 bits (89), Expect = 0.002
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ + +++ + K + K+KKK E K K +K+K K + KK
Sbjct: 103 EESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKP 146
Score = 37.8 bits (88), Expect = 0.002
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPT 57
++ + ++++ + K + K+KK+ E K K +K+K K + K+
Sbjct: 101 TEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSK 150
Score = 35.5 bits (82), Expect = 0.015
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLS 62
+E +++ + K E ++KKK++ K K +K+K P S
Sbjct: 106 TDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPS 149
Score = 30.9 bits (70), Expect = 0.47
Identities = 8/46 (17%), Positives = 27/46 (58%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
L + ++++ ++E + +++ + + + K+KKK++ K K ++
Sbjct: 91 LSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEK 136
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase;
Provisional.
Length = 330
Score = 45.6 bits (109), Expect = 2e-05
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
K+ K++ K KK+ K K ++KK+K++ K K K K RL+
Sbjct: 50 KEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPRLF 93
Score = 39.8 bits (94), Expect = 0.001
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKK 38
L+ L KK+ K K ++KK+K++ K K + K +
Sbjct: 55 ELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPR 91
Score = 29.8 bits (68), Expect = 2.3
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 12 KKKKKKKKEE----------KKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
++KK +K E K+ K++ K ++K+ K K +KKK+K+
Sbjct: 30 AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQE 80
Score = 28.6 bits (65), Expect = 4.8
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 11 KKKKKKKKKE-------EKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
++KK +K E E+ K+ K++ K KK+ K K +KKK++
Sbjct: 30 AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEK 78
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 43.6 bits (103), Expect = 2e-05
Identities = 18/43 (41%), Positives = 31/43 (72%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
++K++K+ K+ E+K+ K KK+K+E+K+KK +K KKK K
Sbjct: 95 SEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTK 137
Score = 42.8 bits (101), Expect = 5e-05
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ ++K+ K+ +E++ K KK+KK+++EKK +K KKK K
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTT 139
Score = 42.8 bits (101), Expect = 5e-05
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKK------KKKKEEEKKKKKKKKKKKKKKKK 51
E +T++K+ K KKE+K+KK+KK KKK + K KK KK KK
Sbjct: 101 EVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKK 154
Score = 42.4 bits (100), Expect = 6e-05
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K+ ++K+ + KK+KK+KK+KK EK KKK K K K+
Sbjct: 101 EVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKK 145
Score = 42.4 bits (100), Expect = 6e-05
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K +K+ K+ +++E K KK+KK+K+E+K +K KKK K K
Sbjct: 97 KEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTK 140
Score = 41.3 bits (97), Expect = 1e-04
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K+ ++K+ + KK+KK+KK+K+ +K KKK K K
Sbjct: 100 KEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTT 143
Score = 39.7 bits (93), Expect = 5e-04
Identities = 16/34 (47%), Positives = 27/34 (79%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
EE +K++K+ K+ EEK+ K KK+KK+KK+K++
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKV 126
Score = 39.7 bits (93), Expect = 5e-04
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 8 KTKKKKKKKKKKEEKKKKK--KKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K+ K KK+K+EKK+KK +K KK+ K K KK KK +
Sbjct: 107 EEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTK 153
Score = 39.0 bits (91), Expect = 0.001
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKKAH 69
+K++K+ K+ ++K+ K ++EKK+KK+KK +K KK+ T KK
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTT 151
Score = 38.2 bits (89), Expect = 0.002
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K +KK+KK+KK EK KKK K + KK KK KK++ K
Sbjct: 115 KKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEEGK 158
Score = 37.0 bits (86), Expect = 0.004
Identities = 20/47 (42%), Positives = 25/47 (53%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K KK+KK+KK E+ KKK K K KK KK KK++ K
Sbjct: 112 IKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEEGK 158
Score = 36.7 bits (85), Expect = 0.006
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E KK+KK+KK+++ +K KKK + K KK KK KK+
Sbjct: 108 EKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKE 155
Score = 36.7 bits (85), Expect = 0.007
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E+ +K++K+ KE E+K+ K KK+KK+KK+
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKE 123
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 45.9 bits (108), Expect = 2e-05
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K + + + + ++K + +KKKEE KKK KKK ++KKK
Sbjct: 1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392
Score = 45.5 bits (107), Expect = 3e-05
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ KKK KKK E+ KK + K E E + + ++K +
Sbjct: 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK 1371
Score = 45.1 bits (106), Expect = 4e-05
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK + KKK EE KKK KKK EE KK + K + +
Sbjct: 1315 KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD 1357
Score = 45.1 bits (106), Expect = 4e-05
Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 6 RLKTKKKKKK----KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K ++ KKK KKK EEKKK + KKK EE+KKK + KK KKK
Sbjct: 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKK 1419
Score = 45.1 bits (106), Expect = 5e-05
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KKK ++ KK E K + + E E ++K + +KKK++ +
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
Score = 44.7 bits (105), Expect = 5e-05
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+K + +KKKEE KKK KKK EEKKK + KKK ++ KK+
Sbjct: 1364 EKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
Score = 44.7 bits (105), Expect = 6e-05
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK ++ KKK + KKK ++ KK E K + + + + +
Sbjct: 1322 KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
Score = 44.4 bits (104), Expect = 8e-05
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ K + +KKK+E KKK KKK EE+KK + KKK ++ KKK
Sbjct: 1363 EEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
Score = 44.0 bits (103), Expect = 1e-04
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK KKK +E KKK ++KKK +E KKK ++ KK + KKK
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK 1452
Score = 43.6 bits (102), Expect = 1e-04
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K ++ KKK KKK ++ KK E K + + + + +++
Sbjct: 1320 AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
Score = 43.6 bits (102), Expect = 1e-04
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK + KKK EE KKK + KK KKK + KKK ++KKK
Sbjct: 1391 KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432
Score = 43.6 bits (102), Expect = 1e-04
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KKK + KK KKK + KKK EEKKK + KKK ++ KK
Sbjct: 1404 KKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
Score = 43.2 bits (101), Expect = 2e-04
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KKK ++KKK +E KKK ++ KKK +E KK KKK + KK+
Sbjct: 1384 KKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKK 1426
Score = 43.2 bits (101), Expect = 2e-04
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KKK ++KKK +E KKK ++ KK +E KKK ++ KK ++ KKK
Sbjct: 1424 KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
Score = 43.2 bits (101), Expect = 2e-04
Identities = 22/43 (51%), Positives = 26/43 (60%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK + KKK EE KK + KKK EE KKK KKK ++ KK
Sbjct: 1302 KKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKA 1344
Score = 43.2 bits (101), Expect = 2e-04
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KKK ++ KK +E KKK ++ KK EE KKK ++ KK + KKK
Sbjct: 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
Score = 43.2 bits (101), Expect = 2e-04
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KKK ++ KK EE KKK ++ KK +E KKK ++ KK + KKK
Sbjct: 1450 KKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK 1491
Score = 43.2 bits (101), Expect = 2e-04
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
E + + + E+K + +KKK+E +KK KKK ++KKK
Sbjct: 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392
Score = 43.2 bits (101), Expect = 2e-04
Identities = 22/42 (52%), Positives = 26/42 (61%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK + KKK EE KK + KKK EE KKK + KK + KKK
Sbjct: 1470 KKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
Score = 42.8 bits (100), Expect = 2e-04
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
E + + ++K E +KKK++ KKK + KKK ++KKK + KK+
Sbjct: 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK 1399
Score = 42.8 bits (100), Expect = 2e-04
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ + + E ++K + +KK+EE KKK KKK ++KK+
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392
Score = 42.8 bits (100), Expect = 3e-04
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK ++ KKK +E KK KKK +E KKK ++KKK + KKK
Sbjct: 1398 KKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKK 1439
Score = 42.4 bits (99), Expect = 3e-04
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KKK + KKK E+KKK + KKK EE KK + KKK ++ KK
Sbjct: 1417 KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458
Score = 42.4 bits (99), Expect = 3e-04
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KKK ++ KK +E KKK ++ KKK +E KK + KKK + KK
Sbjct: 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKK 1517
Score = 42.4 bits (99), Expect = 4e-04
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E K K ++ KK +E+KKK ++ KK +E+EKK + KK+ ++ KK
Sbjct: 1656 EEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
Score = 42.1 bits (98), Expect = 4e-04
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KKK ++ KK +E KKK ++ KK +E KKK ++ KKK + KK
Sbjct: 1463 KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKA 1505
Score = 42.1 bits (98), Expect = 4e-04
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KKK++ KKK + KKK ++KKK +E KKK ++ KKK + KK
Sbjct: 1371 KKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA 1413
Score = 41.7 bits (97), Expect = 5e-04
Identities = 20/41 (48%), Positives = 25/41 (60%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
KK + KKK EE KKK + KK E KKK + KK ++ KK
Sbjct: 1483 KKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
Score = 41.7 bits (97), Expect = 5e-04
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 4 EGRLKTKKKKKK----KKKKEEKKKKKKKKKKKEEEKKKK--KKKKKKKKKKKKR 52
E + K ++ KKK KKK EE KK + K + E + ++K + +KK+
Sbjct: 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
Score = 41.7 bits (97), Expect = 5e-04
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKK--KKKKEEEKKKKKKKKKKKKKKKKRL 53
+ + + KK + KKK E+ KKK KKK EE KK + K + +
Sbjct: 1307 AKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEA 1359
Score = 41.7 bits (97), Expect = 6e-04
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KKK ++ KKK ++ KK KKK +E KKK ++KKK + KK+
Sbjct: 1397 KKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKK 1439
Score = 41.7 bits (97), Expect = 6e-04
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ + + KK + KKK E+ KK + KKK EE KKK + KK + KK+
Sbjct: 1462 AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
Score = 41.3 bits (96), Expect = 6e-04
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKK----KKKKKEEEKKKKKKKKKKKKKKKK 51
+ + + + KK + K E + + ++K + EKKK++ KKK KKK
Sbjct: 1333 AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386
Score = 41.3 bits (96), Expect = 6e-04
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K ++ KK EE KKK ++ KK EE++KK + KK+ ++ K+
Sbjct: 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
Score = 41.3 bits (96), Expect = 7e-04
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ + + KK + KKK E+ KK ++ KKK EE KK + KKK ++ KK
Sbjct: 1436 AKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK 1484
Score = 41.3 bits (96), Expect = 7e-04
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ + + KKK + KKK E+ KK + KKK EE KK ++ KKK ++ KK
Sbjct: 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
Score = 41.3 bits (96), Expect = 8e-04
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK ++ KKK EE KK + KKK EE KK + KKK ++ KKK
Sbjct: 1457 KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK 1498
Score = 41.3 bits (96), Expect = 8e-04
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KKK + KKK E+ KK + KKK EE KKK KKK ++ K+
Sbjct: 1301 KKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKK 1343
Score = 40.9 bits (95), Expect = 9e-04
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK KKK ++ KKK ++KKK +E KKK ++ KK + KK+
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK 1452
Score = 40.9 bits (95), Expect = 9e-04
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ + + KK ++ KKK E+ KK + KKK EE KK + KKK ++ KK+
Sbjct: 1449 AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK 1498
Score = 40.9 bits (95), Expect = 0.001
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K K ++ KK E+ KKK ++ KK EE +KK + KK+ ++ +
Sbjct: 1658 ENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK 1702
Score = 40.9 bits (95), Expect = 0.001
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK ++KKK +E KKK ++ KK +E KKK ++ KKK KK+
Sbjct: 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKK 1337
Score = 40.9 bits (95), Expect = 0.001
Identities = 23/75 (30%), Positives = 34/75 (45%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKK 67
+ KKK + KK E KKK + KK EE KK + KK ++ KK + KK
Sbjct: 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
Query: 68 AHMVPRCNAMRQIYE 82
A + + ++ E
Sbjct: 1554 AEELKKAEEKKKAEE 1568
Score = 40.5 bits (94), Expect = 0.001
Identities = 23/42 (54%), Positives = 28/42 (66%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KKK + KK EEKKK + KKK EE KK + KKK ++ KKK
Sbjct: 1289 KKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKK 1330
Score = 40.1 bits (93), Expect = 0.001
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KKK ++KKK ++ KKK ++ KK +E KKK ++ KK ++ KK+
Sbjct: 1424 KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
Score = 40.1 bits (93), Expect = 0.002
Identities = 18/43 (41%), Positives = 31/43 (72%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK ++ KK +E++KK + KK+ EE KK ++ KKK+ ++KK+
Sbjct: 1675 KKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKK 1717
Score = 40.1 bits (93), Expect = 0.002
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KKK ++ KK EE +KK + KKE E+ KK ++ KKK+ ++K+
Sbjct: 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
Score = 40.1 bits (93), Expect = 0.002
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KKK ++ KK ++ KKK ++ KK EE KKK ++ KK + KK+
Sbjct: 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
Score = 39.7 bits (92), Expect = 0.002
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ KK + K E + + + EE+ + +KKK++ KKK
Sbjct: 1340 EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA 1383
Score = 39.7 bits (92), Expect = 0.002
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK ++ KKK EE KK ++ +KK E KK+ ++ KK ++ KK+
Sbjct: 1668 KKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKK 1710
Score = 39.4 bits (91), Expect = 0.003
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
E + +KKK + KK E+KKK + KKK EE KK + KKK ++ KK+
Sbjct: 1282 ELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKK 1330
Score = 39.0 bits (90), Expect = 0.004
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ + + KK + KKK E+ KKK + KK E KKK + KK ++ KK
Sbjct: 1475 AKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
Score = 38.6 bits (89), Expect = 0.005
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K K + KKK +E+KKK + KK +KK + KKK ++KKK
Sbjct: 1390 KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432
Score = 38.6 bits (89), Expect = 0.006
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E R + KK ++KKK ++ KK ++KKK +E KKK ++ KK + KKK
Sbjct: 1276 EARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKK 1323
Score = 38.2 bits (88), Expect = 0.006
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
KKK ++ KKK ++ KK + KKK +E KK ++ KK + KK
Sbjct: 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKK 1529
Score = 38.2 bits (88), Expect = 0.007
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K + KK+ EE KK ++ KKK+ EEKKK ++ KK +++ K +
Sbjct: 1687 EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIK 1731
Score = 37.8 bits (87), Expect = 0.009
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK ++ +KK E KK+ ++ KK EE KKK+ ++KKK ++ K+
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
Score = 37.8 bits (87), Expect = 0.010
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K ++ KKK +E KK ++ +KK E KK+ ++ KK ++ KKK
Sbjct: 1665 EEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKK 1710
Score = 37.4 bits (86), Expect = 0.010
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK ++ KKK+ E+KKK ++ KK EEE K K ++ KK ++ K+
Sbjct: 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
Score = 37.4 bits (86), Expect = 0.010
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
E + + KK ++KKK ++ KKK ++ KK +E KKK ++ KKK K+
Sbjct: 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKK 1336
Score = 37.4 bits (86), Expect = 0.012
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
LK +++ K K EE KK ++ KKK EE KK ++ +KK + KK
Sbjct: 1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE 1697
Score = 37.4 bits (86), Expect = 0.013
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK ++ KK +EE K K ++ KK EE KKK ++ KK ++ +K+
Sbjct: 1647 KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK 1689
Score = 37.0 bits (85), Expect = 0.013
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKK----KKEEEKKKKKKKKKKKKKKK 50
K K ++ KKK E KK + KKK KK EE KK + KK ++ KK
Sbjct: 1488 AKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK 1535
Score = 37.0 bits (85), Expect = 0.014
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK ++ KKK+ E+KKK ++ KK EEE K K ++ KK+ ++ K+
Sbjct: 1702 KKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK 1744
Score = 37.0 bits (85), Expect = 0.016
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K ++ KK +++EKK + KK+ EE KK ++ KKK+ ++KKK
Sbjct: 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKK 1717
Score = 36.7 bits (84), Expect = 0.020
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
KK ++ KK +EE K K ++ KK+ EE KKK ++ KK +++KK++
Sbjct: 1716 KKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKI 1759
Score = 36.3 bits (83), Expect = 0.024
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K ++ KK ++E K K ++ KK EE+KKK ++ KK ++ +KK
Sbjct: 1646 KKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA 1690
Score = 36.3 bits (83), Expect = 0.027
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 4 EGRLKTKKKKK----KKKKKEEKK----KKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
E + K ++ KK KKK +E KK KKK ++ KK +E KKK ++ KK + KK+
Sbjct: 1435 EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK 1491
Score = 36.3 bits (83), Expect = 0.029
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+LK K+ ++KKK +E KK +++ K K EE KK ++ KKK ++ KK
Sbjct: 1637 QLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK 1682
Score = 36.3 bits (83), Expect = 0.029
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK K ++ KK E+ K K ++ KK EE+KKK ++ KKK+ ++K+
Sbjct: 1605 KKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647
Score = 35.9 bits (82), Expect = 0.032
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK ++ KKK E+ KK ++ +KK E KK+ ++ KK ++ K+
Sbjct: 1667 AKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKK 1709
Score = 35.9 bits (82), Expect = 0.032
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKK----KKEEEKKKKKKKKKKKKKKKK 51
M+ R + K ++ +K +E KK ++KKK KK EEKKK + KKK ++ KK
Sbjct: 1262 MAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKK 1316
Score = 35.9 bits (82), Expect = 0.033
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K ++ KKK+ EEKKK ++ KK +EE K K ++ KK ++ KK+
Sbjct: 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK 1676
Score = 35.9 bits (82), Expect = 0.036
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKKAHM 70
KK + KKK ++ KK ++ KK +E KK ++ KK + KK + + + KKA
Sbjct: 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE 1562
Query: 71 VPRCNAMRQIYE 82
+ ++ E
Sbjct: 1563 KKKAEEAKKAEE 1574
Score = 35.9 bits (82), Expect = 0.038
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K ++ KK EE K K ++ KK EEEKKK ++ KKK+ ++KK+
Sbjct: 1606 KMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648
Score = 35.9 bits (82), Expect = 0.039
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 10 KKKKKKKKKKEEKKK----KKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+K + KK EEKKK KK ++KKK +E KKK ++ KK + KK+
Sbjct: 1277 ARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKK 1323
Score = 35.5 bits (81), Expect = 0.044
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKKAHM 70
K ++ KK+ EE KKK ++ KK EEEKKK KK+++KK + + + +
Sbjct: 1731 KAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDE 1790
Query: 71 VPRCNAMRQI 80
R ++I
Sbjct: 1791 KRRMEVDKKI 1800
Score = 35.5 bits (81), Expect = 0.044
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK+ ++ KK EE KKK+ ++KKK EE KK +++ K K ++ K+
Sbjct: 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKK 1737
Score = 35.5 bits (81), Expect = 0.050
Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K K ++ KK+ E+ KKK ++ KK+EE+KKK KK+++KK
Sbjct: 1729 KIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKK 1769
Score = 35.1 bits (80), Expect = 0.060
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E + + KK + KK E+KKK + KK EE KK ++KKK ++ KK +
Sbjct: 1526 EAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE 1573
Score = 35.1 bits (80), Expect = 0.061
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K ++ KKK+ EEKKK ++ KK +EE K K ++ KK+ ++ KK+
Sbjct: 1701 AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKK 1745
Score = 34.7 bits (79), Expect = 0.070
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
M L K K ++ KK +E K K ++ KK +EE+KK ++ KKK+ ++KKK
Sbjct: 1598 MKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648
Score = 34.7 bits (79), Expect = 0.079
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K ++ KK ++E K K ++ KK+ EE+KKK ++ KK +++KKK
Sbjct: 1715 KKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKK 1758
Score = 34.3 bits (78), Expect = 0.094
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K ++ KK EE+KKK ++ KKKE E+KKK ++ KK +++ K
Sbjct: 1619 KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENK 1660
Score = 34.3 bits (78), Expect = 0.10
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K ++ KK +EEKKK ++ KKK+ EEKKK ++ KK +++ K +
Sbjct: 1621 KAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK 1662
Score = 34.0 bits (77), Expect = 0.14
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK + KK EEKKK + KK +E +K ++KKK ++ KK ++
Sbjct: 1533 AKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEED 1575
Score = 33.6 bits (76), Expect = 0.16
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK+ ++KKK EE KK +++ K K EE KK+ ++ KKK ++ K+
Sbjct: 1709 KKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK 1751
Score = 33.6 bits (76), Expect = 0.20
Identities = 15/44 (34%), Positives = 31/44 (70%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+KK + KKE ++ KK ++ KK+E ++KKK ++ KK +++ ++
Sbjct: 1687 EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKI 1730
Score = 33.2 bits (75), Expect = 0.21
Identities = 18/46 (39%), Positives = 31/46 (67%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
E + + KK ++ KK ++ KK ++KKK +E KK ++ KK ++KKK
Sbjct: 1520 EAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKK 1565
Score = 33.2 bits (75), Expect = 0.22
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
LK K+ ++KKK +E KK +++ K K EE KK+ ++ KKK ++ KK
Sbjct: 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK 1751
Score = 33.2 bits (75), Expect = 0.22
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K +++ K K EE KK+ ++ KKK EE KK +++KKK KK
Sbjct: 1723 KAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKK 1764
Score = 32.8 bits (74), Expect = 0.28
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEE-----KKKKKKKKKKKKKKKKRL 53
KKK ++ KKKE ++KKK ++ KK EE ++ KK ++ KKK +
Sbjct: 1632 KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
Score = 32.8 bits (74), Expect = 0.31
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK ++ K K EE KK +++KKK E+ KKK+ ++KKK ++ KK
Sbjct: 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK 1654
Score = 32.8 bits (74), Expect = 0.36
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K ++ KK+ +E+KKK ++ KK +EE+KK KK+++KK ++
Sbjct: 1729 KIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEE 1772
Score = 32.4 bits (73), Expect = 0.41
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 8 KTKKKKKKKKK----KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K ++ +KK + + E+ KK ++ KKKE E+KKK ++ KK +++ K
Sbjct: 1682 KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENK 1729
Score = 32.0 bits (72), Expect = 0.49
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
E + + KK + KK E+ KK + KK EE+KK + KK ++ KK
Sbjct: 1514 EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKK 1559
Score = 32.0 bits (72), Expect = 0.58
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
LK +++ K K +E KK+ ++ KKK EE KK +++KKK KK+
Sbjct: 1720 ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKE 1765
Score = 32.0 bits (72), Expect = 0.61
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKKA 68
KK ++ KK EEKKK ++ KK +E++ +K ++ KK ++ R+ + KA
Sbjct: 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA 1609
Score = 31.3 bits (70), Expect = 0.92
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
E + + KK ++KKK ++ KK ++ KK EE+KK ++ KK ++ K
Sbjct: 1532 EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDK 1576
Score = 31.3 bits (70), Expect = 1.0
Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K ++ KKE ++ KKK ++ K++E++KKK KK+++KK
Sbjct: 1728 NKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKK 1769
Score = 30.9 bits (69), Expect = 1.4
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ + ++ K +EEKK K ++ KK EE K K ++ KK +++KKK
Sbjct: 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKK 1634
Score = 30.5 bits (68), Expect = 1.4
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKK----KKKKKKKEEEKKKKKKKKKKKKKKKK 51
E R+ +++ K EE +K K ++KKK +E KK ++KKK + KKK
Sbjct: 1259 EARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK 1310
Score = 30.5 bits (68), Expect = 1.7
Identities = 17/42 (40%), Positives = 31/42 (73%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K+ ++ KKK EE KK +++KKK KK+++KK ++ +K+K+
Sbjct: 1737 KEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778
Score = 30.5 bits (68), Expect = 1.8
Identities = 18/42 (42%), Positives = 31/42 (73%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK ++ K K E+ KK +++KKK E+ KKK+ ++KKK ++ K+
Sbjct: 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK 1654
Score = 30.5 bits (68), Expect = 1.8
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ + + ++ K EE+KK K ++ KK EE K K ++ KK +++KK++
Sbjct: 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKV 1635
Score = 30.1 bits (67), Expect = 1.9
Identities = 17/42 (40%), Positives = 31/42 (73%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK+ ++ KKK E+ KK +++KKK KK+++KK ++ +K+K
Sbjct: 1736 KKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEK 1777
Score = 30.1 bits (67), Expect = 1.9
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK ++KKK +E KK ++ KK +E++K ++ KK ++ K R
Sbjct: 1540 KKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALR 1581
Score = 29.7 bits (66), Expect = 3.2
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
E + +KKK + KK E+ KK ++KKK EE KK ++ K +K
Sbjct: 1538 EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK 1582
Score = 29.7 bits (66), Expect = 3.2
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 4/45 (8%)
Query: 6 RLKTKKKKKKKK----KKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
K + ++ KKK KK+E++KKK KKEEEKK ++ +K+K+
Sbjct: 1734 EAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778
Score = 29.3 bits (65), Expect = 3.4
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K +++KK K E+ KK ++ K K EE KK +++KKK ++ KK+
Sbjct: 1599 KLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKK 1641
Score = 28.2 bits (62), Expect = 9.1
Identities = 18/49 (36%), Positives = 34/49 (69%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+E +K +++KK K +E KK ++ K K +E +K +++KKK ++ KKK+
Sbjct: 1594 IEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKE 1642
Score = 28.2 bits (62), Expect = 9.8
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 10 KKKKKKKKKKEEKKK---KKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
KK ++KKK E KK KK ++KKK EE KK ++ K +K +
Sbjct: 1540 KKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEA 1586
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 43.1 bits (102), Expect = 2e-05
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
K K+ K+K K++K+KKKKKKKKK++ KK KKKK
Sbjct: 99 KIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 42.8 bits (101), Expect = 4e-05
Identities = 22/42 (52%), Positives = 31/42 (73%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
L ++K K+ KE+ K+KK+KKKKK+++KKK KK KKKK
Sbjct: 94 LVEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 42.4 bits (100), Expect = 4e-05
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K+ +EK K+KK+KKKK+++KKKK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 41.6 bits (98), Expect = 8e-05
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K+ K+K K+KK+K+++KKKKKKK KK KKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 41.6 bits (98), Expect = 9e-05
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK 42
E ++ + K+K K+K++KKKKKKKKKKK +K KKKK
Sbjct: 97 EQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 40.4 bits (95), Expect = 2e-04
Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 6/40 (15%)
Query: 19 KEEKK------KKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
EE+K K+K K+KK++++KKKKKKKK KK KK+
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 40.4 bits (95), Expect = 2e-04
Identities = 22/37 (59%), Positives = 27/37 (72%), Gaps = 3/37 (8%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K+ K++ K+KK+KKKKKK KKKKK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKK---KKKKKTSKKAAKKKK 135
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 44.1 bits (105), Expect = 3e-05
Identities = 12/57 (21%), Positives = 32/57 (56%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLS 62
+++ ++ +++ KK+E +K+K +++ + K K +KK+K + +K +S
Sbjct: 109 KVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDIS 165
Score = 43.0 bits (102), Expect = 8e-05
Identities = 13/46 (28%), Positives = 30/46 (65%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
L+ K K + ++ E++ KK++ +KE+ ++++K K K +KK++
Sbjct: 103 LEEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRK 148
Score = 42.2 bits (100), Expect = 1e-04
Identities = 11/44 (25%), Positives = 27/44 (61%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K + ++ +++ +K++ +K+K ++K K K +KK+K +
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPR 150
Score = 39.9 bits (94), Expect = 7e-04
Identities = 11/43 (25%), Positives = 28/43 (65%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K + ++ +++ KK++ +K++ ++++K K K +KK+K
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKP 149
Score = 36.4 bits (85), Expect = 0.010
Identities = 9/46 (19%), Positives = 24/46 (52%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
E + K ++ +K+K +++K K K +++ K + +K + +
Sbjct: 116 EQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPV 161
Score = 34.5 bits (80), Expect = 0.051
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+K+K + E+K K K +KK + + +K + + L
Sbjct: 126 GEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISEL 167
Score = 33.0 bits (76), Expect = 0.13
Identities = 9/45 (20%), Positives = 21/45 (46%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K ++++K K K +KK+K + +K E + + + +
Sbjct: 130 KAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQAVK 174
Score = 32.6 bits (75), Expect = 0.21
Identities = 7/44 (15%), Positives = 21/44 (47%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K+K ++++K + K +KK+K + ++ + + +
Sbjct: 126 GEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTV 169
Score = 32.6 bits (75), Expect = 0.21
Identities = 8/48 (16%), Positives = 21/48 (43%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
G + ++++K K + +KK+K + +K E + + +
Sbjct: 125 AGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQA 172
Score = 32.6 bits (75), Expect = 0.22
Identities = 8/50 (16%), Positives = 22/50 (44%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K K ++++K K + +KK+K + ++ E + + + +
Sbjct: 124 AAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQAV 173
Score = 32.6 bits (75), Expect = 0.22
Identities = 10/37 (27%), Positives = 25/37 (67%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+K+ EE K K + ++ +++ KK++ +K+K +++R
Sbjct: 100 RKQLEEAKAKVQAQRAEQQAKKREAAGEKEKAPRRER 136
Score = 32.6 bits (75), Expect = 0.22
Identities = 7/38 (18%), Positives = 26/38 (68%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+K+ +E K K + ++ +++ +K++ +K+K +++++
Sbjct: 100 RKQLEEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERK 137
Score = 32.2 bits (74), Expect = 0.29
Identities = 7/48 (14%), Positives = 22/48 (45%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E + +K ++++K + K +KK+K + ++ + + +
Sbjct: 123 EAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVG 170
Score = 29.1 bits (66), Expect = 2.6
Identities = 8/43 (18%), Positives = 18/43 (41%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ +K K K +K+ K + +K + + + + K K
Sbjct: 134 RERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQAVKVK 176
Score = 29.1 bits (66), Expect = 2.6
Identities = 9/45 (20%), Positives = 21/45 (46%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
R +K+K +++ + K K +KK+K +K + + +
Sbjct: 122 REAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISE 166
Score = 28.7 bits (65), Expect = 3.0
Identities = 7/44 (15%), Positives = 19/44 (43%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+++K K K +K+K + +K + + + + K +
Sbjct: 134 RERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQAVKVKA 177
Score = 28.4 bits (64), Expect = 4.2
Identities = 7/44 (15%), Positives = 20/44 (45%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ ++K K K ++++K + +K + + + + K K
Sbjct: 133 RRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQAVKVK 176
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 45.0 bits (107), Expect = 3e-05
Identities = 17/49 (34%), Positives = 19/49 (38%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
KKK K K K KKK K E + KK +KK K Y
Sbjct: 72 SDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNY 120
Score = 42.3 bits (100), Expect = 3e-04
Identities = 13/45 (28%), Positives = 17/45 (37%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ KT K K +KK K + K+ EKK K K
Sbjct: 78 KTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVK 122
Score = 41.5 bits (98), Expect = 5e-04
Identities = 10/64 (15%), Positives = 17/64 (26%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKK 67
K K KKK K + ++ +KK K K + +
Sbjct: 79 TKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDD 138
Query: 68 AHMV 71
+
Sbjct: 139 DDDL 142
Score = 41.1 bits (97), Expect = 6e-04
Identities = 11/48 (22%), Positives = 16/48 (33%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
K K K + KKK K + +K +KK K +
Sbjct: 77 KKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDI 124
Score = 40.0 bits (94), Expect = 0.001
Identities = 13/50 (26%), Positives = 18/50 (36%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
S + KTK K K KKK K + ++ +KK K
Sbjct: 72 SDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYV 121
Score = 40.0 bits (94), Expect = 0.002
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
T + K++ K K K KKK K + KK +K
Sbjct: 65 DTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEK 108
Score = 40.0 bits (94), Expect = 0.002
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ KK+ K K K +KK K + KK +KK
Sbjct: 66 TDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKK 109
Score = 39.2 bits (92), Expect = 0.002
Identities = 12/44 (27%), Positives = 16/44 (36%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KKK K K K KK+ + + KK +KK
Sbjct: 70 TESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALD 113
Score = 39.2 bits (92), Expect = 0.002
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ KKK + K K ++K K + KK +KK
Sbjct: 67 DDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKN 110
Score = 38.1 bits (89), Expect = 0.006
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
L +++ KKK KK K K K KEE K+ + KKK ++ +
Sbjct: 9 ELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQ 54
Score = 37.7 bits (88), Expect = 0.008
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
T+ KKK K K K K++ K + KK +KK
Sbjct: 69 ATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNAL 112
Score = 37.7 bits (88), Expect = 0.009
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ KKK + K K +++ K + KK +KK
Sbjct: 68 DATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNA 111
Score = 36.9 bits (86), Expect = 0.012
Identities = 12/50 (24%), Positives = 16/50 (32%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ K + KKK K K + KKK K + KK
Sbjct: 56 LIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKK 105
Score = 36.9 bits (86), Expect = 0.015
Identities = 10/44 (22%), Positives = 14/44 (31%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ +KK K K + KKK K + KK
Sbjct: 64 KDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAE 107
Score = 36.9 bits (86), Expect = 0.015
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
T K + +EE KKK KK K + K K++ K+ + K
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESK 45
Score = 36.1 bits (84), Expect = 0.024
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+K + ++K K K + KKK K + KK +
Sbjct: 63 VKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAE 107
Score = 35.4 bits (82), Expect = 0.040
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K + ++E KKK KK K + + K++ K+ + KK
Sbjct: 3 TASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKK 46
Score = 35.0 bits (81), Expect = 0.047
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K + +++ KK+ KK K K K K++ K+ + KKK ++
Sbjct: 7 KAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQ 51
Score = 35.0 bits (81), Expect = 0.054
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ K + +++ +KK KK K K + K++ K+ + KKK
Sbjct: 4 ASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKK 47
Score = 35.0 bits (81), Expect = 0.062
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K KKK K + + KK +KK +++ K +
Sbjct: 86 AAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADD 132
Score = 33.8 bits (78), Expect = 0.13
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
TK + +++ ++K KK K K + K++ K+ + KKK
Sbjct: 5 STKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKT 48
Score = 33.8 bits (78), Expect = 0.13
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
T K + EE+ KKK KK + + K K++ K+ + +
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESK 45
Score = 32.7 bits (75), Expect = 0.31
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
L + KKK KK K + K K++ KE + KKK ++ +
Sbjct: 8 AELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIF 58
Score = 32.3 bits (74), Expect = 0.35
Identities = 18/68 (26%), Positives = 22/68 (32%), Gaps = 22/68 (32%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKK----------------------EEEKKKKKKKK 43
+L K K K KEE K+ + KKK E + KKK K
Sbjct: 22 KLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKT 81
Query: 44 KKKKKKKK 51
K K
Sbjct: 82 AAKAAAAK 89
Score = 32.3 bits (74), Expect = 0.35
Identities = 8/46 (17%), Positives = 13/46 (28%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K KK+ K + KK +++ K K
Sbjct: 81 TAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDV 126
Score = 32.3 bits (74), Expect = 0.35
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K + E++ KKK KK + K K K++ K+ +
Sbjct: 1 MTTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALE 43
Score = 31.9 bits (73), Expect = 0.44
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTS 58
KK KK K + K K++ K+ E KKK ++ + + +
Sbjct: 17 KKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDT 66
Score = 30.3 bits (69), Expect = 1.4
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 20/64 (31%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKK--------------------KEEEKKKKKKKKKKKK 47
K+K K++ KE + KKK ++ + KKK K K
Sbjct: 28 KSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAA 87
Query: 48 KKKK 51
K
Sbjct: 88 AKAP 91
Score = 28.4 bits (64), Expect = 5.6
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 21 EKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K + EEE KKK KK K K K +
Sbjct: 1 MTTASTKAELAAEEEAKKKLKKLAAKSKSKGFI 33
Score = 28.0 bits (63), Expect = 7.8
Identities = 8/44 (18%), Positives = 19/44 (43%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTS 58
+ + +++ KKK ++ K K K K++ + L +
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESK 45
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 44.6 bits (106), Expect = 3e-05
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KKK++ ++ E + + +KK+K +EE KKKK K+ K K K
Sbjct: 231 KKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALK 273
Score = 42.7 bits (101), Expect = 1e-04
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ + +K+ K K++ KKKK +E K K KK K KK
Sbjct: 244 AESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282
Score = 41.9 bits (99), Expect = 2e-04
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ + +KK + K++ KKKK KE + K KK K KK
Sbjct: 244 AESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282
Score = 41.9 bits (99), Expect = 2e-04
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
+ +KK+K KEE KKKK K+ K + KK K KK
Sbjct: 244 AESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282
Score = 41.9 bits (99), Expect = 2e-04
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 7 LKTKKKKKKKKKKE--------EKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
L K+ KKKK+E E + +KK+K K+E +KKK K+ K K KK
Sbjct: 223 LDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKV 275
Score = 40.8 bits (96), Expect = 6e-04
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ + ++++K K++ KKKK +E K K KK K K++
Sbjct: 244 AESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKKI 283
Score = 39.2 bits (92), Expect = 0.002
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
E +KK+K K++ +KKK K+ K K +K K KK
Sbjct: 242 EAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282
Score = 38.1 bits (89), Expect = 0.004
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ KKKK++ +E+ + + + +KK + K++ KKKK K+ K K L
Sbjct: 227 LKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKAL 272
Score = 37.7 bits (88), Expect = 0.005
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K+ KKKK++ EE + + + +K+ + K++ KKKK K+ K +
Sbjct: 226 YLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVK 270
Score = 33.8 bits (78), Expect = 0.089
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K+ KKKK++ E+ + + + +++ K K++ KKKK K+ K
Sbjct: 225 KYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGV 269
Score = 33.5 bits (77), Expect = 0.13
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
L + K K KE KKKK++ ++ E + + +KK+K K++ KK+
Sbjct: 216 LIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKK 261
Score = 31.5 bits (72), Expect = 0.57
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
L + K K +E KKKK++ ++ E + + +KK+K K++ K+
Sbjct: 215 LLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKK 260
Score = 31.1 bits (71), Expect = 0.70
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 21/72 (29%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKK---------------------KKKKKEEEKKKK 39
+ + + K + K K K+ K+K KEE KKKK
Sbjct: 203 LPPDLYKELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKK 262
Query: 40 KKKKKKKKKKKK 51
K+ K K KK
Sbjct: 263 PKESKGVKALKK 274
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 45.2 bits (108), Expect = 4e-05
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
L +K +K + + K KK + +K K++ +K K
Sbjct: 812 ELLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 43.6 bits (104), Expect = 1e-04
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
K + K KK K +K +++ +K K
Sbjct: 820 KLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 42.9 bits (102), Expect = 2e-04
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K +K + K KK + +K K++ +K K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 41.7 bits (99), Expect = 5e-04
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+E L+ +K +K + K KK K +K K++ +K
Sbjct: 807 VEEALELLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKD 855
Score = 41.3 bits (98), Expect = 6e-04
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
L + + + K+ KK K + K K++ +K K
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKFSR---KTKQQYVASEKDGKA 858
Score = 40.9 bits (97), Expect = 8e-04
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K +K + + K KK + +K K++ +K +
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 39.4 bits (93), Expect = 0.002
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPT 57
EK +K + + KK K +K K+ Y+ +
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVAS 852
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 44.7 bits (106), Expect = 4e-05
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
R + +K+ +K K+K K K K ++ ++E+ + ++KKK+KK K
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSER 390
Score = 44.3 bits (105), Expect = 5e-05
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+LK K K K K E+ KK++ + +KKK+KK K +++ +
Sbjct: 352 KLKEKPPKPPTKAKPERDKKERPGRY---RRKKKEKKAKSERRGLQN 395
Score = 42.8 bits (101), Expect = 1e-04
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
SL L+ + +K K+K + K K ++ KKE + ++KKK+KK K ++R
Sbjct: 341 SLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERR 391
Score = 41.6 bits (98), Expect = 3e-04
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
LE R++ K K+K K K K ++ KK+ + ++KKK+KK K +++ L
Sbjct: 345 ELEKRIE---KLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGL 393
Score = 40.8 bits (96), Expect = 7e-04
Identities = 13/47 (27%), Positives = 29/47 (61%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ +++ +K+ +K ++K K K K E KK++ + ++KKK+K+
Sbjct: 339 GISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKK 385
Score = 37.0 bits (86), Expect = 0.011
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
E K K K ++ K+E+ + ++KKK+++ K +++ +
Sbjct: 355 EKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 31.2 bits (71), Expect = 0.70
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKE 33
R K ++ + ++KK+EKK K +++ +
Sbjct: 365 KPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 44.0 bits (104), Expect = 8e-05
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTS 58
G KT +KK K KK K K K K +KK K K KK KK+ LY P+
Sbjct: 741 GTPKTPYEKKTKAKK--KSASTKGKAAKTVKKKSKAKSKKTTKKRAGPLYTPSP 792
Score = 38.6 bits (90), Expect = 0.004
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIP 60
+K+ K KKK K + K KKK K K KK K+ P P
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRAGPLYTP 790
Score = 37.1 bits (86), Expect = 0.012
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKK 40
E + K KKK K K K KKK K K ++ KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 34.4 bits (79), Expect = 0.10
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 22 KKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLS 62
+KK K KKK + K K KKK K K K+ + PL
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRAGPLY 788
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 43.9 bits (104), Expect = 1e-04
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKK 67
K K++ + EK++K+ K++K K KK+++KKKK+ +K IP + +FK+
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKA---KIPPAEFFKR 599
Score = 39.6 bits (93), Expect = 0.002
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK 41
R K +K+ K++K+ K KK+++KKKKE EK +K K
Sbjct: 555 REKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 36.9 bits (86), Expect = 0.014
Identities = 12/37 (32%), Positives = 27/37 (72%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK 43
+ K++K+ K+++ +K KK+++KK++E +K +K K
Sbjct: 554 QREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 36.5 bits (85), Expect = 0.016
Identities = 13/37 (35%), Positives = 30/37 (81%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
+++K++K+ +E+K+ +K KK++E++KK+ +K +K K
Sbjct: 554 QREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 32.3 bits (74), Expect = 0.45
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKK 38
E K K++K+ +K +K+++KKKK+ ++ EK K
Sbjct: 555 REKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 40.1 bits (94), Expect = 1e-04
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K K KK + KKKKKKKKKK + K++ +K++++K
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAE 49
Score = 37.0 bits (86), Expect = 0.002
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 5 GRLKTKKKK--KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
G+LK K KK KKKKK KKKKK K K+E +K++++K + K
Sbjct: 8 GKLKLKGKKIDVKKKKK---KKKKKNKSKEEVVTEKEEEEKSSAESDLKE 54
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 42.4 bits (100), Expect = 2e-04
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
E K + K+K K ++ K+K++K+ + E K++K+ KKK
Sbjct: 265 EYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKK 305
Score = 38.9 bits (91), Expect = 0.002
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
K + K+K + ++ K+K++K+ E E K++K+ KKK
Sbjct: 271 KPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKK 305
Score = 37.4 bits (87), Expect = 0.010
Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 22/68 (32%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEE----------------------KKKKKKKKKK 45
K ++ K+K++K+ E++ K++K+ KK+ K+++K++ +K
Sbjct: 280 KAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEK 339
Query: 46 KKKKKKRL 53
KK K+++L
Sbjct: 340 KKLKRRKL 347
Score = 35.1 bits (81), Expect = 0.043
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K+K K ++ K++ K+ +++ K++K+ KKK
Sbjct: 268 PINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKK 305
Score = 34.7 bits (80), Expect = 0.055
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ + + K K+K K ++ KE+ +K+ +++ K++K+ KK+L
Sbjct: 257 SAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKL 306
Score = 34.7 bits (80), Expect = 0.056
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 10/63 (15%)
Query: 4 EGRLKTKKKKKKKKK----------KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
E + K++K+ KKK +E +K+K + +K+E++K++ +KKK K++K +
Sbjct: 291 ELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKKLKRRKLGKH 350
Query: 54 YLP 56
P
Sbjct: 351 KYP 353
Score = 34.3 bits (79), Expect = 0.091
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 15/62 (24%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKK---------------KKKKEEEKKKKKKKKKKKKKKK 50
R K K++K+ +++ +E+K+ KKK +K+K +KK+++K++ +KKK
Sbjct: 283 RNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKKL 342
Query: 51 KR 52
KR
Sbjct: 343 KR 344
Score = 30.1 bits (68), Expect = 2.0
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
KKK KKKK K+ +K+ + KK KK K K K
Sbjct: 89 KKKSKKKKSKQVSRKELLRLKKLARGKKGGKAKLLNASKD 128
Score = 29.7 bits (67), Expect = 2.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ + KKK KKKK ++ +K+ + KK KK K K K
Sbjct: 84 KKRHVKKKSKKKKSKQVSRKELLRLKKLARGKKGGKAKLLNASKD 128
Score = 28.9 bits (65), Expect = 4.5
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K KKK KKKK ++ +K+ + K+ + KK K K K
Sbjct: 85 KRHVKKKSKKKKSKQVSRKELLRLKKLARGKKGGKAKLLNASKD 128
Score = 28.9 bits (65), Expect = 4.6
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK+ KK+ KKKK K+ +KE + KK + KK K K
Sbjct: 82 SVKKRHVKKKSKKKKSKQVSRKELLRLKKLARGKKGGKAKL 122
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 42.1 bits (99), Expect = 2e-04
Identities = 19/40 (47%), Positives = 22/40 (55%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K+K K EKK KK K K K + K K K K + K KK
Sbjct: 82 PKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPP 121
Score = 41.7 bits (98), Expect = 3e-04
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K K +KK KK K + K K K K K + + K KK K K
Sbjct: 87 KPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
Score = 41.3 bits (97), Expect = 3e-04
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ K +KK KK + K K K K K K + + K KK K K
Sbjct: 86 EKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
Score = 40.9 bits (96), Expect = 4e-04
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+T + K KE+ K +KK KK K + K K K K K K + K
Sbjct: 74 ETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKP 117
Score = 40.9 bits (96), Expect = 5e-04
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K K+K + +KK KK K K + K K K K K + K KK
Sbjct: 76 PPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKP 120
Score = 40.5 bits (95), Expect = 6e-04
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K + + E K K+K K E++ KK K K K K K K +
Sbjct: 66 QPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPK 110
Score = 40.2 bits (94), Expect = 8e-04
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E K+K K +KK +K K K K K K + K K + K KK K
Sbjct: 78 EPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTA 125
Score = 39.8 bits (93), Expect = 0.001
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ + + K K+K K +KK ++ K K K K K K K K
Sbjct: 69 PPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVK 112
Score = 39.4 bits (92), Expect = 0.001
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K+K K +KK ++ K K K K K + + K + K KK K
Sbjct: 83 KPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAA 126
Score = 39.4 bits (92), Expect = 0.001
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+K K +KK K+ K K K K K K + K + K KK K K
Sbjct: 85 KEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
Score = 39.4 bits (92), Expect = 0.001
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ + + K K+K K +++ KK K K K K K K K
Sbjct: 67 PKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKV 111
Score = 39.0 bits (91), Expect = 0.002
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ K + + E K K+K K E+K KK K K K K K K
Sbjct: 65 EQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPK 108
Score = 38.2 bits (89), Expect = 0.003
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K K +KK KK + K K K K K + + + K KK K K
Sbjct: 85 KEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKA 128
Score = 38.2 bits (89), Expect = 0.003
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSI 59
KK KK K K + K K K K K + + KK K K + P S
Sbjct: 90 PEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSA 141
Score = 37.8 bits (88), Expect = 0.004
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ + + +++ K + + + + K+K K +KK KK K K
Sbjct: 57 QPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKP 101
Score = 37.5 bits (87), Expect = 0.006
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
T+ + + + K+K K +KK ++ K K K K K K K K +
Sbjct: 71 TEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQ 114
Score = 37.1 bits (86), Expect = 0.007
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K +EK K +KK KK + + K K K K K K + K
Sbjct: 73 PETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKP 117
Score = 37.1 bits (86), Expect = 0.008
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ +++ K + E + K KE+ K +KK KK K K K K
Sbjct: 60 PEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPK 104
Score = 35.9 bits (83), Expect = 0.017
Identities = 13/53 (24%), Positives = 19/53 (35%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIP 60
K KK K K K + K K K K + K ++ K K + +
Sbjct: 92 KKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASA 144
Score = 35.9 bits (83), Expect = 0.019
Identities = 8/45 (17%), Positives = 21/45 (46%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ + +++ + + + + + K+K K +KK KK K +
Sbjct: 56 PQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPK 100
Score = 34.8 bits (80), Expect = 0.039
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKK---KKKKKKKKKKKR 52
K + + + K K+K K +K+ +K K K K K K K K +
Sbjct: 68 KPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQP 115
Score = 32.1 bits (73), Expect = 0.29
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK 41
K K K K K K + K K + K KK + K
Sbjct: 94 PKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 42.0 bits (99), Expect = 2e-04
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
K KKKKKK++K KK K KK K++K + K KK ++++RL
Sbjct: 254 KVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQ 296
Score = 40.4 bits (95), Expect = 7e-04
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K KKKKKKKKK KK K KK K+ + + K KK +++++ +K+
Sbjct: 254 KVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKK 298
Score = 38.5 bits (90), Expect = 0.003
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K KKKKKK K+ K KK K++K K KK +++++ +KK K
Sbjct: 257 KKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
Score = 36.2 bits (84), Expect = 0.018
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
++K KKKKKKK ++ K KK K+++ K KK +++++ +KK +
Sbjct: 254 KVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
Score = 33.5 bits (77), Expect = 0.13
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK + K KKKKKKKK+ KK K KK K++K R
Sbjct: 242 KKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKAR 283
Score = 33.1 bits (76), Expect = 0.15
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
K K++KKKKKK KK + KK K++K + K KK
Sbjct: 254 KVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRR 292
Score = 32.0 bits (73), Expect = 0.41
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
L+ KK + K KKKKKKK++ KK K KK K++K
Sbjct: 236 SLEDMYKKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKA 282
Score = 31.2 bits (71), Expect = 0.71
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKKAH 69
K E+ KK + K KKKKKKKKK KK + L+ +KA
Sbjct: 229 KAGVGPDSLEDMYKKAHAAIRANPSKVKKKKKKKKKVVHKK----YKTKKLTGKQRKAR 283
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 42.4 bits (100), Expect = 2e-04
Identities = 17/39 (43%), Positives = 32/39 (82%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
++K++KKEE++K K+++ +EE++K++KKKK KK K+
Sbjct: 42 EEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKET 80
Score = 42.1 bits (99), Expect = 3e-04
Identities = 18/41 (43%), Positives = 31/41 (75%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
++K++KK+EE+K K+++ EEE+K++KKKK KK K+
Sbjct: 42 EEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTT 82
Score = 42.1 bits (99), Expect = 3e-04
Identities = 18/41 (43%), Positives = 31/41 (75%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
++K++KK++EEK K+++ +EEEK++KKKK KK K+
Sbjct: 42 EEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTT 82
Score = 39.0 bits (91), Expect = 0.003
Identities = 12/40 (30%), Positives = 31/40 (77%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
++K++++++++K K++E +++++K++KKKK KK K
Sbjct: 42 EEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETT 81
Score = 38.6 bits (90), Expect = 0.004
Identities = 14/41 (34%), Positives = 31/41 (75%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
++K++KK+++E+ K+++ ++EE+++KKKK KK K+
Sbjct: 42 EEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTT 82
Score = 37.8 bits (88), Expect = 0.008
Identities = 14/44 (31%), Positives = 31/44 (70%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
E + ++KK++++K +K+++ ++++KEE+KKK KK K+
Sbjct: 39 EEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTT 82
Score = 37.1 bits (86), Expect = 0.012
Identities = 14/41 (34%), Positives = 30/41 (73%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
+ K++KK++++K K+++ +++++EEKKKK KK K+
Sbjct: 42 EEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTT 82
Score = 35.1 bits (81), Expect = 0.055
Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 7/53 (13%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKK-------KKKKKKKKKKKK 51
L +K+ +K+ EE++++K++KK++EE+ K ++K++KKKK KK
Sbjct: 24 YLWVEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKK 76
Score = 30.1 bits (68), Expect = 2.0
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 8 KTKKKKKKKKKKEEKKKKKK-KKKKKEEEKKKKKK 41
K ++ ++++K+E+KKK KK K+ E E K K
Sbjct: 57 KEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTK 91
Score = 29.7 bits (67), Expect = 2.1
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
E T K+++ +++E+++KKKK KK KE + + K K
Sbjct: 50 EEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTK 91
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 42.3 bits (99), Expect = 3e-04
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 11/79 (13%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKK-----------KKKKEEEKKKKKKKKKKKKKKK 50
+ R K KKK++ KK EE + + K KE+ KK + + K+K +
Sbjct: 163 AAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLEL 222
Query: 51 KRLYLPTSIPLSHYFKKAH 69
+ L L ++
Sbjct: 223 EEENLLYLDYLKLNEERID 241
Score = 38.4 bits (89), Expect = 0.005
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ + K++ +KEE+ + K+ KEEEK+KK ++++ K K+
Sbjct: 250 EQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEE 296
Score = 37.3 bits (86), Expect = 0.011
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
LE L+TK+ K ++K+E +K+ K K K E KK + K+ K K
Sbjct: 436 LEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLE 485
Score = 37.3 bits (86), Expect = 0.014
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
LE R ++K K+ +KE KK +K+ KK+KEE ++ +K+ K+ + K++
Sbjct: 305 KLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEE 357
Score = 36.1 bits (83), Expect = 0.025
Identities = 14/51 (27%), Positives = 31/51 (60%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
S + L+ +++ + KE K+++K+KK ++EE K K++++ K + K
Sbjct: 255 ESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLK 305
Score = 35.7 bits (82), Expect = 0.035
Identities = 10/44 (22%), Positives = 30/44 (68%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
++++K +K K E++K++K K ++EE + +++ K++ + ++
Sbjct: 779 EEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQ 822
Score = 35.3 bits (81), Expect = 0.050
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
E LK +KK++ K +E ++ + K+ K EEK++ +K+ K K K
Sbjct: 416 EQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDK 465
Score = 35.3 bits (81), Expect = 0.052
Identities = 12/51 (23%), Positives = 31/51 (60%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ + + + K++ +K+EE + K+ K+EE++KK ++++ K K++
Sbjct: 247 LRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEE 297
Score = 35.3 bits (81), Expect = 0.054
Identities = 13/49 (26%), Positives = 33/49 (67%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
LK +++K ++K ++ +K+ KK +KE +K+K++ ++ +K+ K+ +
Sbjct: 303 LLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIK 351
Score = 34.9 bits (80), Expect = 0.070
Identities = 10/48 (20%), Positives = 33/48 (68%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ + KK +K+ K+EK++ ++ +K+ +E + K++ +++++++ +K
Sbjct: 319 ESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQ 366
Score = 34.6 bits (79), Expect = 0.083
Identities = 13/46 (28%), Positives = 33/46 (71%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K KK +K+ KKE+++ ++ +K+ KE E K++ +++++++ +K +
Sbjct: 322 KELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQE 367
Score = 34.2 bits (78), Expect = 0.13
Identities = 14/50 (28%), Positives = 36/50 (72%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E +LK +K+ KK +KE KK+K++ ++ ++E K+ + K++ +++++++
Sbjct: 312 DDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQ 361
Score = 33.8 bits (77), Expect = 0.13
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK-------KKKKKKKKRLYL 55
K ++ K + KKE +++KK+ ++ E+ ++ K+ + K YL
Sbjct: 987 KEERYNKDELKKERLEEEKKELLREIIEETCQRFKEFLELFVSINRGLNKVFFYL 1041
Score = 33.8 bits (77), Expect = 0.15
Identities = 10/49 (20%), Positives = 25/49 (51%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
+ K ++ K K++ +K + + K+K E +++ K ++R+ L
Sbjct: 194 EELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDL 242
Score = 33.8 bits (77), Expect = 0.16
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
LE + K K++ KK + + K+K + EEE K +++ L
Sbjct: 193 LEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLL 243
Score = 33.4 bits (76), Expect = 0.22
Identities = 11/50 (22%), Positives = 27/50 (54%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
G + + ++K+E K + KK++ EEEKK+ ++ ++ ++ +
Sbjct: 972 ELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQRFK 1021
Score = 33.0 bits (75), Expect = 0.29
Identities = 11/44 (25%), Positives = 28/44 (63%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
++ + ++E+ + K++ +KEEE + K+ K+++K+K+L
Sbjct: 241 DLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKL 284
Score = 32.6 bits (74), Expect = 0.31
Identities = 9/46 (19%), Positives = 30/46 (65%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ ++++K +K + +++K++K K +EEE + +++ K++ + +
Sbjct: 776 ELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEE 821
Score = 32.6 bits (74), Expect = 0.37
Identities = 12/44 (27%), Positives = 33/44 (75%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
+K+ KK ++E KK+K++ ++ E+E K+ + K++ +++++++L
Sbjct: 321 EKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEK 364
Score = 31.1 bits (70), Expect = 0.96
Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKK--------KKEEEKKKKKKKKKKKKKKKKRLYLPT 57
++++++ K+ K++ +KEE K + KK++ +++KK L
Sbjct: 953 EDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREI 1012
Query: 58 SIPLSHYFKKAH 69
FK+
Sbjct: 1013 IEETCQRFKEFL 1024
Score = 31.1 bits (70), Expect = 0.97
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
LK ++ K K++ K+ + + K+K + EE+ K +++ L
Sbjct: 195 ELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLL 243
Score = 31.1 bits (70), Expect = 1.0
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
L+ + K K K E KK + K+ K + ++ + ++K ++
Sbjct: 454 LEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEA 499
Score = 30.3 bits (68), Expect = 1.8
Identities = 8/67 (11%), Positives = 26/67 (38%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIP 60
L+ + K++ KK + + K+K + +++ K +++ + L
Sbjct: 194 EELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEE 253
Query: 61 LSHYFKK 67
+ ++
Sbjct: 254 IESSKQE 260
Score = 29.9 bits (67), Expect = 2.2
Identities = 13/43 (30%), Positives = 31/43 (72%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ KK+++++E+ + K+K+ EEE+K +K K +++K++K +
Sbjct: 756 SRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLK 798
Score = 29.6 bits (66), Expect = 3.3
Identities = 15/53 (28%), Positives = 37/53 (69%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
LE LK +K++ ++ +KE K+ + K++ ++EEE++ +K ++K ++ +++ L
Sbjct: 327 LEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAK 379
Score = 29.6 bits (66), Expect = 3.4
Identities = 8/53 (15%), Positives = 24/53 (45%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+L + ++ K ++ K +++ KK + + +EK + +++ K
Sbjct: 184 ENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLN 236
Score = 28.8 bits (64), Expect = 5.5
Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 3 LEGRLKTKKKKKKKKK------KEEKKKKKKKKKKKEEEKKKKKKKKKKK--KKKKKRL 53
RL K++ EEK+++ K + K+E +++KK+ ++ ++ +R
Sbjct: 962 RNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQRF 1020
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 40.3 bits (95), Expect = 3e-04
Identities = 12/53 (22%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKK----KKKKKEEEKKKKKKKKKKKKKKKKRL 53
G K +K+++++++ E ++ ++ + +KE K K++K+++ ++K+K+ L
Sbjct: 95 GLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEIL 147
Score = 36.9 bits (86), Expect = 0.005
Identities = 10/48 (20%), Positives = 32/48 (66%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+L KK+K++++EE+ + ++ ++++ ++ +K+ K K++K++
Sbjct: 92 KLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRREN 139
Score = 33.4 bits (77), Expect = 0.061
Identities = 13/46 (28%), Positives = 29/46 (63%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K KK+K++EE+++ + ++ +EE+ + +K+ K K++KR
Sbjct: 91 RKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKR 136
Score = 32.6 bits (75), Expect = 0.13
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
+ E++ K K++K++E E+K+K+ K++ K
Sbjct: 122 ELLEKELAKLKREKRRENERKQKEILKEQMK 152
Score = 30.3 bits (69), Expect = 0.78
Identities = 8/27 (29%), Positives = 20/27 (74%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKK 38
K+ K K+E++++ ++K+K+ +E+ K
Sbjct: 126 KELAKLKREKRRENERKQKEILKEQMK 152
Score = 29.6 bits (67), Expect = 1.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEK 36
L K+ K K++K + ++K+K+ KE+ K
Sbjct: 123 LLEKELAKLKREKRRENERKQKEILKEQMK 152
Score = 28.4 bits (64), Expect = 3.1
Identities = 8/32 (25%), Positives = 21/32 (65%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKK 40
+ +K+ K + +K+++ ++K+KE K++ K
Sbjct: 121 DELLEKELAKLKREKRRENERKQKEILKEQMK 152
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 41.3 bits (97), Expect = 3e-04
Identities = 21/59 (35%), Positives = 42/59 (71%), Gaps = 5/59 (8%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK--KKKKKRLYLPTSIPLSHYFK 66
KK K++++K+EE+++K++KK+++EEE+K+K ++ +K K K+R P +PL+
Sbjct: 190 KKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQKWMKNVKQR---PKPVPLNQGMD 245
Score = 39.3 bits (92), Expect = 0.002
Identities = 15/47 (31%), Positives = 40/47 (85%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
R ++++ KK+ ++ E KK K++++K+EEE++K++KK+++++++K++
Sbjct: 173 RNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQK 219
Score = 34.7 bits (80), Expect = 0.045
Identities = 14/55 (25%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKK----KKKKKKKEEEKKKKKKKKKKKKKKKK 51
S L K ++ +EE KK+ + KK K++++K++++++K++KK++++
Sbjct: 159 ESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEE 213
Score = 33.9 bits (78), Expect = 0.092
Identities = 13/48 (27%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK---KKKKR 52
K +++KK +K E+K+K++++K++EE + +++ K+K + ++K +
Sbjct: 96 KQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQ 143
Score = 32.4 bits (74), Expect = 0.29
Identities = 15/52 (28%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEE--KKKKKKKKKKKKKKKKR 52
L+ L+ K+K++++K++EE + +++ K+K EE ++K ++ K++ K K+
Sbjct: 104 LQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKK 155
Score = 30.9 bits (70), Expect = 0.86
Identities = 10/43 (23%), Positives = 33/43 (76%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
+ + K++++++K+++++++++++K+K EE +K K K++ K
Sbjct: 194 QQQQKREEERRKQRKKQQEEEERKQKAEEAWQKWMKNVKQRPK 236
Score = 29.3 bits (66), Expect = 2.3
Identities = 8/41 (19%), Positives = 29/41 (70%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K+ ++++K +K ++K+K+E +K++++ + +++ K++
Sbjct: 93 LSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEK 133
Score = 29.3 bits (66), Expect = 3.0
Identities = 10/42 (23%), Positives = 31/42 (73%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K+ +++KK +K ++K+K+++E+E+++ + +++ K+K +
Sbjct: 94 SAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYE 135
Score = 28.9 bits (65), Expect = 3.3
Identities = 11/52 (21%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK--KKKKKKKKKKRL 53
+ + K +K ++K+K+E +K++++ + ++ K+K ++ ++K ++ K+R
Sbjct: 99 QRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRT 150
Score = 28.5 bits (64), Expect = 4.2
Identities = 9/41 (21%), Positives = 29/41 (70%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K+ +++++ +K ++K+K+E EK++++ + +++ K+K
Sbjct: 93 LSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEK 133
Score = 28.2 bits (63), Expect = 6.2
Identities = 9/42 (21%), Positives = 28/42 (66%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
K+ + +KK +K ++K+++E++K++++ + +++ K Y
Sbjct: 93 LSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKY 134
Score = 27.8 bits (62), Expect = 7.7
Identities = 9/43 (20%), Positives = 28/43 (65%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
++++K++++ E +++ K+K ++ +K ++ K++ K KK
Sbjct: 114 QEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKE 156
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation
of 60S ribosomal subunits.
Length = 132
Score = 39.7 bits (93), Expect = 4e-04
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
++KK K KKK + +K +KK K++ EK++ +K + K
Sbjct: 26 RSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
Score = 38.1 bits (89), Expect = 0.001
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 7 LKTKKKKKKKKKK--EEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
L +K K+K KK K KKK + EK +KK K++ + +K++ L
Sbjct: 10 LASKLPASKRKDPILSRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQAL 58
Score = 35.8 bits (83), Expect = 0.007
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
KK K KKK + +K +KK K++ +K++ +K + K
Sbjct: 28 KKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
Score = 35.8 bits (83), Expect = 0.008
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
R K K KKK K E+ +KK K++ + E+ + +K + K
Sbjct: 26 RSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
Score = 35.4 bits (82), Expect = 0.011
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
++ KK K KK+ K +K +KK K++ +K++ +K + K
Sbjct: 25 SRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
Score = 35.0 bits (81), Expect = 0.016
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+ KK K K++ K +K +KK K + + +K++ +K + K
Sbjct: 26 RSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
Score = 33.9 bits (78), Expect = 0.041
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ KK K ++K K +K +KK + + + +K++ +K + K
Sbjct: 26 RSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
Score = 33.5 bits (77), Expect = 0.056
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ KK K +KK K +K +KK + + + +K++ +K + K
Sbjct: 26 RSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
Score = 31.6 bits (72), Expect = 0.26
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLP 56
K K+K + KK K K++ K +K +KK K++ + ++
Sbjct: 12 SKLPASKRKDPILSRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQAL 58
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 41.4 bits (97), Expect = 4e-04
Identities = 19/44 (43%), Positives = 20/44 (45%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KT KK K K KK KK K+ KK K KK KK K
Sbjct: 233 KTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAK 276
Score = 39.5 bits (92), Expect = 0.002
Identities = 18/44 (40%), Positives = 18/44 (40%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK KKK K KK K K KK KK KK KK
Sbjct: 219 AKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKK 262
Score = 39.1 bits (91), Expect = 0.002
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ K+ KK KKK + KK K + KK KK KK KK
Sbjct: 217 AKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKA 263
Score = 38.7 bits (90), Expect = 0.003
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ + K K KK +KK K K+ K K KK KK KK
Sbjct: 213 KKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKK 258
Score = 38.3 bits (89), Expect = 0.004
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K KK KK +K KK K K+ KK K K K K
Sbjct: 246 AKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAK 287
Score = 37.9 bits (88), Expect = 0.005
Identities = 20/61 (32%), Positives = 24/61 (39%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKK 67
KT K KK KK KK KK K ++ KK K K K + + KK
Sbjct: 243 KTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKK 302
Query: 68 A 68
A
Sbjct: 303 A 303
Score = 37.6 bits (87), Expect = 0.007
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K KKK K KK K K ++ KK KK KK K K+
Sbjct: 225 KVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKK 269
Score = 37.2 bits (86), Expect = 0.010
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK K K KK KK ++ KK K KK KK +
Sbjct: 234 TAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAK 276
Score = 36.8 bits (85), Expect = 0.011
Identities = 17/47 (36%), Positives = 18/47 (38%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK K K KK KKK K KK K K KK K+
Sbjct: 208 AKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKK 254
Score = 36.8 bits (85), Expect = 0.011
Identities = 17/45 (37%), Positives = 19/45 (42%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K KK K K KK K+ KK KK K KK K+
Sbjct: 229 KKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKK 273
Score = 36.8 bits (85), Expect = 0.013
Identities = 16/45 (35%), Positives = 19/45 (42%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K KKK K KK K K ++ KK KK KK K +
Sbjct: 224 KKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVK 268
Score = 36.4 bits (84), Expect = 0.015
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K KK KK+ K KK + K KK KK KK K+
Sbjct: 218 KAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKK 262
Score = 36.4 bits (84), Expect = 0.016
Identities = 17/45 (37%), Positives = 19/45 (42%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
LK K KK K+ K K K + K K K KKK KK
Sbjct: 260 LKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAA 304
Score = 36.0 bits (83), Expect = 0.021
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 8 KTKKKKKKKKKKEEKKKKKK-----KKKKKEEEKKKKKKKKKKKKKKKK 51
+ KK K K KK KK KK K +K KK K K K
Sbjct: 236 VSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKG 284
Score = 35.6 bits (82), Expect = 0.027
Identities = 15/44 (34%), Positives = 17/44 (38%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KT K KK K K KK K++ K KK K K
Sbjct: 204 KTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAK 247
Score = 35.2 bits (81), Expect = 0.033
Identities = 16/45 (35%), Positives = 19/45 (42%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K K KK KKK K ++ K K KK KK K+
Sbjct: 214 KASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKK 258
Score = 35.2 bits (81), Expect = 0.033
Identities = 13/43 (30%), Positives = 15/43 (34%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K KK + K KK KKK + KK K K
Sbjct: 206 PAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKA 248
Score = 35.2 bits (81), Expect = 0.037
Identities = 13/44 (29%), Positives = 15/44 (34%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K KK + K KK KK+ K KK K K
Sbjct: 205 TPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKA 248
Score = 34.9 bits (80), Expect = 0.050
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K KK + K KK KK ++ KK K KK KK
Sbjct: 232 AKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAA 275
Score = 34.9 bits (80), Expect = 0.053
Identities = 16/45 (35%), Positives = 18/45 (40%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K KK KK K K K K + + K KKK KK K
Sbjct: 265 KAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKA 309
Score = 34.9 bits (80), Expect = 0.055
Identities = 15/44 (34%), Positives = 17/44 (38%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K KK K K K K K K + +KK KK K K
Sbjct: 269 KAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKAT 312
Score = 34.5 bits (79), Expect = 0.060
Identities = 15/46 (32%), Positives = 17/46 (36%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
G KK K K KK K K ++ KKK K KK
Sbjct: 195 GAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKK 240
Score = 34.1 bits (78), Expect = 0.089
Identities = 13/44 (29%), Positives = 16/44 (36%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K K ++ K K KK +KK K KK K
Sbjct: 201 KAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKT 244
Score = 33.7 bits (77), Expect = 0.10
Identities = 14/48 (29%), Positives = 16/48 (33%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K K +K K K K+ KKK K KK K
Sbjct: 196 AANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAK 243
Score = 33.3 bits (76), Expect = 0.14
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K K K K K K K KK+ KK K K K +
Sbjct: 273 KAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPK 317
Score = 33.3 bits (76), Expect = 0.16
Identities = 16/57 (28%), Positives = 19/57 (33%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKKA 68
KK K + KK K K KK KKK K K+ + K A
Sbjct: 200 KKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTA 256
Score = 32.6 bits (74), Expect = 0.25
Identities = 21/67 (31%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 8 KTKKKKKKKKKKEEK------KKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPL 61
K K KK KK K K K K K + KKK KK K K P
Sbjct: 262 KAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAK 321
Query: 62 SHYFKKA 68
KK
Sbjct: 322 GKKAKKV 328
Score = 28.7 bits (64), Expect = 4.5
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK K K +K K K KK KK+
Sbjct: 196 AANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKK 230
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called
The RES complex, pre-mRNA retention and splicing
complex. Subunits of this complex are not essential for
viability of yeasts but they are required for efficient
splicing in vitro and in vivo. Furthermore,
inactivation of this complex causes pre-mRNA leakage
from the nucleus. Bud13 contains a unique,
phylogenetically conserved C-terminal region of unknown
function.
Length = 141
Score = 40.0 bits (94), Expect = 4e-04
Identities = 17/48 (35%), Positives = 37/48 (77%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
R K+ + ++K+EEK+++K++K++KEE++K+ K +K++++KRL
Sbjct: 5 RDKSGRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRL 52
Score = 36.9 bits (86), Expect = 0.004
Identities = 16/54 (29%), Positives = 38/54 (70%), Gaps = 8/54 (14%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKE--------EEKKKKKKKKKKKKKKK 50
GR+ ++K+++K++E+++K++K++K+KE EE++K+ ++ +K K K
Sbjct: 9 GRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKP 62
Score = 35.4 bits (82), Expect = 0.013
Identities = 17/52 (32%), Positives = 35/52 (67%), Gaps = 7/52 (13%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKK-------KEEEKKKKKKKKKKKKKKKKR 52
+K+++K+++KEEK++K++K+K+ KEE +K+ ++ +K K K R
Sbjct: 14 IEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLAR 65
Score = 28.8 bits (65), Expect = 2.0
Identities = 8/30 (26%), Positives = 20/30 (66%)
Query: 26 KKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
K + EEK+++K+++K++K++K+
Sbjct: 7 KSGRIIDIEEKREEKEREKEEKERKEEKEK 36
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 41.6 bits (98), Expect = 4e-04
Identities = 20/45 (44%), Positives = 23/45 (51%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
LKT K KK++ KKK K K K K K KKKKKK+
Sbjct: 497 LKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKE 541
Score = 38.5 bits (90), Expect = 0.004
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK------KKKKKKRLYLPTSIP 60
KK+KK+ K+K++ K + +K+K+K KK K K+ KK Y + +P
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDKKLKNVIINEKRNKKAAKYQVSQLP 678
Score = 37.0 bits (86), Expect = 0.015
Identities = 19/46 (41%), Positives = 22/46 (47%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K+ KK+ KKK K K K K K KKKKKK+K L
Sbjct: 505 KSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDDL 550
Score = 36.2 bits (84), Expect = 0.025
Identities = 16/50 (32%), Positives = 20/50 (40%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ KK+ KKK K K K + K KKKKKK+K
Sbjct: 500 TSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDD 549
Score = 34.3 bits (79), Expect = 0.087
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEE----KKKKKKKKKKKKKKKKRLYLPTSIPLSH 63
K +K K K+ EK +K++++++ +EE K K KK+ K+ ++
Sbjct: 466 KVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAAN 525
Query: 64 YFKKAHM 70
KA +
Sbjct: 526 KISKAAV 532
Score = 32.7 bits (75), Expect = 0.31
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K KK+ K + KE+K+ ++++ + EEE K +K K K+ +K
Sbjct: 436 SKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEK 480
Score = 32.0 bits (73), Expect = 0.58
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K+ + KK KKE K + K+KK+ EEE+ + +++ K +K K
Sbjct: 431 EKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANK 473
Score = 30.8 bits (70), Expect = 1.1
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKE----EEKKKKK 40
+ K K+K++ K E KK+K+K KK + EK+ KK
Sbjct: 629 RKKKRKRKRRFLTKIEGVKKEKRKDKKLKNVIINEKRNKK 668
Score = 30.4 bits (69), Expect = 1.5
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
+ +KKK K K K K K K+++KK+K
Sbjct: 505 KSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDD 549
Score = 29.6 bits (67), Expect = 2.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
E +KK ++K E +K+ + KK ++E K + K+KK+
Sbjct: 411 ENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESD 454
Score = 29.3 bits (66), Expect = 4.1
Identities = 11/46 (23%), Positives = 26/46 (56%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K ++K + EK+ + KK KK+ + + K+KK+ ++++ +
Sbjct: 418 KNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEE 463
Score = 28.9 bits (65), Expect = 4.2
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
++ KK ++K + +KE E KK KK+ K + K+KK
Sbjct: 413 EEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKK 451
Score = 28.1 bits (63), Expect = 7.5
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K ++K + +K+ + KK KKE + + K+KK+ ++++ +
Sbjct: 417 KKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELE 460
Score = 28.1 bits (63), Expect = 8.2
Identities = 10/49 (20%), Positives = 26/49 (53%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
E + + +++ ++ +K ++K + EK+ + KK KK+ K + +
Sbjct: 400 ELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFK 448
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this
family (Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 38.4 bits (90), Expect = 5e-04
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK 42
K +K+++K +++EE K+ K K+++ EEK +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 34.2 bits (79), Expect = 0.015
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK 43
+K+++K ++EE+ K+ K K++E E+K +K KK
Sbjct: 3 RKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 33.4 bits (77), Expect = 0.029
Identities = 10/29 (34%), Positives = 23/29 (79%)
Query: 22 KKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K++K+++K ++EEE K+ K K+++ ++K
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEK 29
Score = 32.6 bits (75), Expect = 0.066
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 29 KKKKEEEKKKKKKKKKKKKKKKKR 52
K++KEEEK +++++ K+ K K+
Sbjct: 1 KERKEEEKAQREEELKRLKNLKRE 24
Score = 31.8 bits (73), Expect = 0.11
Identities = 11/35 (31%), Positives = 27/35 (77%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K++K+EEK +++++ K+ + K+++ ++K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 30.7 bits (70), Expect = 0.31
Identities = 8/32 (25%), Positives = 25/32 (78%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+E+K+++K ++++E ++ K K+++ ++K +K
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEK 32
>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional.
Length = 1004
Score = 41.6 bits (97), Expect = 5e-04
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 109 GDSIGLHAVRVLGWG-----VENDIPYWLVANSWNDHWGDHGTFKI 149
GD HAV ++G+G + YW+V NSW +WGD G FK+
Sbjct: 717 GDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKV 762
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
Length = 393
Score = 41.1 bits (97), Expect = 5e-04
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
L+ KK KK + K KKKKKK K + ++ K KKK
Sbjct: 340 TRLDSFFTATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKK 390
Score = 40.0 bits (94), Expect = 0.001
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
TKK KK K + KKKKKK K + ++ K KKK +
Sbjct: 349 TKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVK 392
Score = 36.9 bits (86), Expect = 0.013
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K KK K + KKKKKK + + ++ K KKK K+
Sbjct: 350 KKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 36.1 bits (84), Expect = 0.023
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 4 EGRLKT--KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ RL + KK KK K K KKKKKK K + ++ K K+
Sbjct: 339 QTRLDSFFTATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKK 389
Score = 33.4 bits (77), Expect = 0.14
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
+K K KKKKKK K + +E + KKK KK
Sbjct: 357 NSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 30.4 bits (69), Expect = 1.5
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 9 TKKKKKKKKKKEEK-----KKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSH 63
+ KK K KK + + KK KK + K KKKKKK + S
Sbjct: 328 ERLKKAKTKKTQTRLDSFFTATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSG 387
Query: 64 YFKK 67
K
Sbjct: 388 KKKV 391
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 40.4 bits (95), Expect = 5e-04
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 6 RLKTKKKKKKK---KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K ++ KKK+ K+ E + KKK +EE+KKKKKK KKKK KK
Sbjct: 150 LKKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKV 198
Score = 38.4 bits (90), Expect = 0.002
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 7 LKTKKKKKKKKK---KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
L K ++ KKK+ KE + + KKK EE+KKKKKKK KKKK K+
Sbjct: 149 LLKKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKK 197
Score = 36.9 bits (86), Expect = 0.007
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
+ KKK EE+KKKKKKK K+++ KK K
Sbjct: 169 ARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 33.8 bits (78), Expect = 0.081
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ KKK E++KKKKKKK KKKK KK K
Sbjct: 168 AARDKKKSNNAEEEKKKKKKKSA---KKKKLKKVAAVGMKA 205
Score = 33.4 bits (77), Expect = 0.097
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
E +K + + KKK +++KKKKKKK KKKK KK K +
Sbjct: 158 KKELDIKEAEAARDKKKSNNAEEEKKKKKKK---SAKKKKLKKVAAVGMKAI 206
Score = 31.1 bits (71), Expect = 0.64
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKK 38
+ + + +++KKKKK++ KKKK KK K
Sbjct: 168 AARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 30.4 bits (69), Expect = 1.2
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLP 56
KK ++ KKKE K+ + + K++ +++KKKKKKK K+ L
Sbjct: 150 LKKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLK 196
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 41.6 bits (98), Expect = 6e-04
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
K ++ K K K K K +K K KKK++++KK K KK
Sbjct: 1152 IAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKR 1200
Score = 37.7 bits (88), Expect = 0.010
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K+++ K K + K K +K K ++++KKKKK K KK
Sbjct: 1148 EEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASV 1194
Score = 37.3 bits (87), Expect = 0.013
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ + K K K K + K KKK+KKKK+ K KK K+
Sbjct: 1153 AKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKR 1200
Score = 36.9 bits (86), Expect = 0.014
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK KK+ + KKKKK +KK KKK K + K+ +
Sbjct: 1308 KKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSS 1350
Score = 36.9 bits (86), Expect = 0.017
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
TKKK KK+ + KKKKK +K+ +KKK K + K+ +
Sbjct: 1306 TKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQS 1349
Score = 36.9 bits (86), Expect = 0.017
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ ++ ++K+ KE++ K K K K + K K KKK+KKKKK
Sbjct: 1143 EQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSA 1186
Score = 35.8 bits (83), Expect = 0.032
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
RL+ KKKKK EKK +KKK K ++ + + ++ +K+
Sbjct: 1313 RLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKK 1360
Score = 35.8 bits (83), Expect = 0.034
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E + + K+++ K + K K K +K K ++K+KKKKK K KK
Sbjct: 1143 EQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKA 1192
Score = 34.6 bits (80), Expect = 0.088
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K K KK+ + KKKKK +KK +KK K + K+ + RL
Sbjct: 1307 KKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRL 1352
Score = 34.3 bits (79), Expect = 0.11
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSI 59
+ KKKK+ +KK +KKK K K+ + + ++ ++ +S
Sbjct: 1310 VKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSS 1365
Score = 34.3 bits (79), Expect = 0.11
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK---KKKKKKR 52
R + K KKK KK+ + KKKKK +KK KKK K R
Sbjct: 1287 PPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTR 1340
Score = 33.9 bits (78), Expect = 0.14
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ + + K K +K K KK+EKKKKK K ++ K+ +K+K
Sbjct: 1158 LKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKL 1209
Score = 33.9 bits (78), Expect = 0.15
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E L+ +++ ++K+ +E++ K K K K + +K K KKK+KKKKK
Sbjct: 1137 FEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSS 1185
Score = 33.9 bits (78), Expect = 0.16
Identities = 16/58 (27%), Positives = 24/58 (41%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTS 58
+L+ K KKK+KKK++ K KK K+ +K+K K S
Sbjct: 1163 KGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNS 1220
Score = 33.5 bits (77), Expect = 0.17
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
LEG L KKKKK +KK +KKK K + K+ + + ++ +KKK
Sbjct: 1313 RLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSD 1362
Score = 32.7 bits (75), Expect = 0.29
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
KTK K K +K + KKK+KKKKK ++ KK K+
Sbjct: 1161 KTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEK 1206
Score = 32.7 bits (75), Expect = 0.33
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
L+ + K K K +K K ++K+KKKKK + +K K+ +KR
Sbjct: 1156 QRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKR 1207
Score = 32.3 bits (74), Expect = 0.39
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K KKK KK + KKKK+ EKK +KKK K + K+
Sbjct: 1301 KPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQAS 1345
Score = 32.3 bits (74), Expect = 0.44
Identities = 14/46 (30%), Positives = 30/46 (65%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K ++ +++++ EEK+ K+++ K + + K K +K K KKK+K+
Sbjct: 1136 KFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKK 1181
Score = 31.6 bits (72), Expect = 0.69
Identities = 18/93 (19%), Positives = 28/93 (30%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYF 65
+ K KKKKK K +K K+ + ++K+K K KK
Sbjct: 1175 KKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTK 1234
Query: 66 KKAHMVPRCNAMRQIYEHGPLVAIFSVYADFLQ 98
K V R + + D +
Sbjct: 1235 PKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSK 1267
Score = 31.6 bits (72), Expect = 0.78
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 8 KTKKKKKKKKKKEEKKKKKKK-----KKKKEEEKKKKKKKKKKKKKKKKRLYLPTSI 59
K KK+ + KKKKK + KKK + K+ + + ++ R S
Sbjct: 1308 KKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSS 1364
Score = 31.6 bits (72), Expect = 0.82
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSI 59
+LK K+KKKKK ++ KK K + +K+K K KK
Sbjct: 1173 KLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQE 1226
Score = 31.6 bits (72), Expect = 0.84
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ ++K+ ++++ K K K K K +K K KKK+KKK+
Sbjct: 1146 EVEEKEIAKEQRLKSKTKGKA---SKLRKPKLKKKEKKKK 1182
Score = 30.4 bits (69), Expect = 1.9
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTS 58
+G K KK+ KK+ + +++KK +KK +KKK K + S
Sbjct: 1291 RPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASAS 1347
Score = 30.0 bits (68), Expect = 2.1
Identities = 16/69 (23%), Positives = 22/69 (31%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKK 67
KK+KKKKK +K KK + +K+K K KK + K
Sbjct: 1174 LKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKT 1233
Query: 68 AHMVPRCNA 76
Sbjct: 1234 KPKKSSVKR 1242
Score = 30.0 bits (68), Expect = 2.4
Identities = 13/46 (28%), Positives = 29/46 (63%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
L ++ +++++ E+K+ K+++ K + K K K +K K KKK++
Sbjct: 1134 LDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEK 1179
Score = 29.6 bits (67), Expect = 2.7
Identities = 15/57 (26%), Positives = 22/57 (38%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLS 62
R KKK+KKKKK K KK ++ +K+K K + +
Sbjct: 1170 RKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQE 1226
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region
covers both the Brf homology II and III regions. This
region is involved in binding TATA binding protein.
Length = 95
Score = 38.0 bits (89), Expect = 6e-04
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 21 EKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLP 56
E++++K+ K+K +E KKKKK+K KKK+ P
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAGP 65
Score = 38.0 bits (89), Expect = 7e-04
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
EE+++K+ K+K E KKKKK+K KKK+
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDE 62
Score = 36.1 bits (84), Expect = 0.003
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+E+++K+ K+K + KKKKK+K KKK+
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRD 61
Score = 34.5 bits (80), Expect = 0.012
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+++E+K+ K+K + KKKKK+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEA 63
Score = 32.6 bits (75), Expect = 0.058
Identities = 11/34 (32%), Positives = 24/34 (70%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K+ +++++K+ K++ ++ KKKKK+K KK+
Sbjct: 26 KDYLEEQEEKELKQKADEGNNSGKKKKKRKAKKK 59
Score = 31.8 bits (73), Expect = 0.089
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK 42
L+ +++K+ K+K +E KKKKK++ +KK+ +
Sbjct: 29 LEEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 26.4 bits (59), Expect = 7.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEE 34
+ +K + ++KKK+K KKK+ E
Sbjct: 35 KELKQKADEGNNSGKKKKKRKAKKKRDEA 63
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 41.4 bits (97), Expect = 6e-04
Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 24/70 (34%)
Query: 8 KTKKKKKKKKKKE------------------------EKKKKKKKKKKKEEEKKKKKKKK 43
KTK K+KKK KK+ +K K K E+ KKK K
Sbjct: 74 KTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKITVNK 133
Query: 44 KKKKKKKKRL 53
KKKKK L
Sbjct: 134 STNKKKKKVL 143
Score = 36.7 bits (85), Expect = 0.015
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSI 59
K K K +K KKK K KKKKK K + K K K ++ P +I
Sbjct: 117 KPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPKSISIHSPLTI 168
Score = 34.8 bits (80), Expect = 0.065
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 20/77 (25%)
Query: 8 KTKKKKKKKKK----------KEEKKKKK----------KKKKKKEEEKKKKKKKKKKKK 47
K K+KKK KKK + K K +K K + EK KKK K
Sbjct: 76 KLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKITVNKST 135
Query: 48 KKKKRLYLPTSIPLSHY 64
KKK+ L + L Y
Sbjct: 136 NKKKKKVLSSKDELIKY 152
Score = 33.7 bits (77), Expect = 0.16
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSI 59
+K K K ++ KKK K KKKKK K + K P SI
Sbjct: 115 MRKPKPKTEKLKKKITVNKSTN---KKKKKVLSSKDELIKYDNNKPKSI 160
Score = 32.5 bits (74), Expect = 0.35
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
KK +K +KK KK K ++ KK K K+KKK KKK
Sbjct: 48 INKKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKK 86
Score = 32.1 bits (73), Expect = 0.51
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
KK E+ KK KK K ++ K KK K K+KKK KK+L
Sbjct: 48 INKKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKKL 87
Score = 31.7 bits (72), Expect = 0.63
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
KK +K ++K KK K ++ KK K K+KKK KKK
Sbjct: 48 INKKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKK 86
Score = 29.8 bits (67), Expect = 2.4
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKKAHMVPRCN 75
KK +K KK KK + + K KK K K+KKK + L ++F + +
Sbjct: 48 INKKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFA 107
Score = 29.0 bits (65), Expect = 4.1
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
KK +K ++ KK K K+ +K K K+KKK KKK
Sbjct: 47 DINKKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKK 86
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which
is functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are typically between 137 and 257 amino acids in
length. There are two completely conserved residues (D
and L) that may be functionally important.
Length = 136
Score = 38.9 bits (91), Expect = 7e-04
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
T + ++E+ + +K+ K ++E+ +K +K+ KK KK +
Sbjct: 83 TVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
Score = 36.2 bits (84), Expect = 0.006
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ +EEK + +K+ K ++++ +K +K+ KK KK
Sbjct: 84 VNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
Score = 35.8 bits (83), Expect = 0.008
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+ +++K E +K+ K ++EE +K +K+ KK KK +
Sbjct: 84 VNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
Score = 32.0 bits (73), Expect = 0.18
Identities = 9/39 (23%), Positives = 25/39 (64%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
++ +++K + +KE K ++++ +K +++ KK KK +
Sbjct: 87 TVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
Score = 28.1 bits (63), Expect = 3.8
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKE 33
+ E + + +K+ K ++EE +K +K+ KK +
Sbjct: 91 TEEEKAEARKEALKAYQQEELRKIQKRSKKSK 122
Score = 27.3 bits (61), Expect = 6.3
Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 7 LKTKKKKKK---KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+K K E +++K + +KE K ++++ +K +K+ K+
Sbjct: 72 IKVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKK 120
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 39.7 bits (93), Expect = 7e-04
Identities = 11/45 (24%), Positives = 35/45 (77%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
KK+ K ++K+ ++++++ ++++ EE+KK ++K++ ++K+++ L
Sbjct: 4 GAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEEL 48
Score = 38.5 bits (90), Expect = 0.002
Identities = 16/53 (30%), Positives = 43/53 (81%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
E R K ++K++ ++K+EE+ +++++KKK+EEE+K+++++ +K++++ ++L
Sbjct: 26 EEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKL 78
Score = 35.8 bits (83), Expect = 0.014
Identities = 13/42 (30%), Positives = 32/42 (76%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
KK+ K EEK+ ++++++ +EEE++++KK ++K++ ++K
Sbjct: 5 AKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEE 46
Score = 35.4 bits (82), Expect = 0.022
Identities = 10/47 (21%), Positives = 40/47 (85%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+L+ K+ ++++++ EE++++++KK +++ E ++K++++ +++++KK+
Sbjct: 10 KLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKK 56
Score = 35.1 bits (81), Expect = 0.025
Identities = 10/48 (20%), Positives = 39/48 (81%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
E + ++KK ++K++ E+K++++ ++++E++K+++++K+++++ +K
Sbjct: 23 AEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARK 70
Score = 32.4 bits (74), Expect = 0.23
Identities = 12/45 (26%), Positives = 35/45 (77%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ ++K++++ +EE++KKK+++++KE E++ +K++++ +K K
Sbjct: 37 KREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSS 81
Score = 32.0 bits (73), Expect = 0.30
Identities = 12/59 (20%), Positives = 37/59 (62%), Gaps = 9/59 (15%)
Query: 5 GRLKTKKKKKKKKKKE---------EKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
G K K ++K+ +++ E++KK ++K++ E +++++ +++++KKK+++
Sbjct: 4 GAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERK 62
Score = 30.1 bits (68), Expect = 1.2
Identities = 13/48 (27%), Positives = 37/48 (77%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
LE + + ++K++++ ++E +KKK+++++K+ EE+ +K++++ +K K
Sbjct: 34 LEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSS 81
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 39.5 bits (93), Expect = 8e-04
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKK----EEEKKKKKKKKKKKKKKKKRL 53
KKK KK KKE++K++K+ +K +E K+ ++ K +K ++ + L
Sbjct: 12 VDKKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDREL 60
Score = 37.6 bits (88), Expect = 0.003
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
L KKK KK KK++ K++K+ +K + + + K+ ++ K +K +R
Sbjct: 11 LVDKKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAER 56
Score = 35.7 bits (83), Expect = 0.014
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K KK KK+K++++K+ +K ++E K+ ++ K +K ++ R
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDR 58
Score = 31.4 bits (72), Expect = 0.34
Identities = 9/52 (17%), Positives = 28/52 (53%), Gaps = 13/52 (25%)
Query: 7 LKTKKKKKKKKKKE-------------EKKKKKKKKKKKEEEKKKKKKKKKK 45
K +K+K++K+ ++ E+ K +K ++ +E ++++ + ++K
Sbjct: 20 AKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQK 71
Score = 31.4 bits (72), Expect = 0.35
Identities = 12/59 (20%), Positives = 30/59 (50%), Gaps = 13/59 (22%)
Query: 8 KTKKKKKKKKKK-------------EEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K K+K++K+ +K EE K +K ++ ++ +++ + ++K + K+L
Sbjct: 22 KEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQKAIVAQIKQL 80
Score = 31.4 bits (72), Expect = 0.41
Identities = 11/59 (18%), Positives = 31/59 (52%), Gaps = 13/59 (22%)
Query: 8 KTKKKKKKKKKKEEK-------------KKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K KK+K+K++K+ K ++ K +K +++ E ++++ + ++K ++
Sbjct: 19 KAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQKAIVAQI 77
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 39.2 bits (92), Expect = 8e-04
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK + KK KKK + KK K+ +K +KK+KK K+KK
Sbjct: 129 KKSEIKKLVLKKKFDELKKSKQLDKALEKKRKKNAGKEKK 168
Score = 38.0 bits (89), Expect = 0.002
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 10/62 (16%)
Query: 2 SLEGRLKTKKKK------KKKKKKEEKKKKKKKKK----KKEEEKKKKKKKKKKKKKKKK 51
S++ RLKT K K K+ KK+EK+ K+ KK KK E KK KKK + KK K
Sbjct: 90 SMKSRLKTLKNKDREREILKEHKKQEKELIKEGKKPYYLKKSEIKKLVLKKKFDELKKSK 149
Query: 52 RL 53
+L
Sbjct: 150 QL 151
Score = 37.6 bits (88), Expect = 0.003
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
+K++ K K K +E + K+ KK++KE K+ KK KK + KK +
Sbjct: 90 SMKSRLKTLKNKDREREILKEHKKQEKELIKEGKKPYYLKKSEIKKLVL 138
Score = 36.5 bits (85), Expect = 0.007
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
L + KK KK E KK KKK E +K K+ K +KK+KK
Sbjct: 118 LIKEGKKPYYLKKSEIKKLVLKKKFDELKKSKQLDKALEKKRKKNA 163
Score = 33.0 bits (76), Expect = 0.11
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK + KK +KK + KK K+ + K +KK+KK K++
Sbjct: 129 KKSEIKKLVLKKKFDELKKSKQLD---KALEKKRKKNAGKEK 167
Score = 31.9 bits (73), Expect = 0.23
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K KK K ++KEE K+ + K + + K K ++++ K+ KK+
Sbjct: 70 KALKKTKDSEEKEELKRTLQSMKSRLKTLKNKDREREILKEHKKQ 114
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 40.0 bits (94), Expect = 0.001
Identities = 15/75 (20%), Positives = 31/75 (41%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFK 66
++ K + ++++ ++KKKKKKKK KK + + + + K
Sbjct: 169 VELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLK 228
Query: 67 KAHMVPRCNAMRQIY 81
K + N ++Y
Sbjct: 229 KKRSIAPDNEKSEVY 243
Score = 38.1 bits (89), Expect = 0.004
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 2 SLEGRLKTKKKKKKKKK---KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K KKKKKK KK + E + + KK KKKR
Sbjct: 178 EERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKR 231
Score = 36.9 bits (86), Expect = 0.009
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+EE + K + +++ +KKKKKKKKK KK
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTKKNNAT 198
Score = 30.0 bits (68), Expect = 1.7
Identities = 15/67 (22%), Positives = 28/67 (41%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKKAHMVPRCNAMR 78
E K + ++++ K+++KKKKKK KK +S + A V ++
Sbjct: 169 VELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLK 228
Query: 79 QIYEHGP 85
+ P
Sbjct: 229 KKRSIAP 235
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 40.5 bits (95), Expect = 0.001
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKE-------EEKKKKKKKKKKKKKKKKR 52
+ K+++ KKK K + E K KK KKKKKKKKKR
Sbjct: 237 EKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKR 288
Score = 36.3 bits (84), Expect = 0.025
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 21/65 (32%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKK---------------------EEEKKKKKKKKKKKK 47
T + EKK+++ KKK K E K KK KKKKKK
Sbjct: 225 TLDSGGSTDDEAEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKK 284
Query: 48 KKKKR 52
KKK+R
Sbjct: 285 KKKRR 289
Score = 35.1 bits (81), Expect = 0.054
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 18/65 (27%)
Query: 3 LEGRLKTKKKKKKKKKKEEK------------------KKKKKKKKKKEEEKKKKKKKKK 44
L ++ ++K+++ K KK KK++KKKE E+KK +
Sbjct: 58 LREKIAKAREKRERNSKLGGIKTLGEDDDDDDDTKAWLKKSKKRQKKKEAERKKALLLDE 117
Query: 45 KKKKK 49
K+K++
Sbjct: 118 KEKER 122
Score = 34.7 bits (80), Expect = 0.072
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ K KK KKKK++KKK++K + E E + + +K
Sbjct: 271 EMVKFKKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRKD 314
Score = 33.2 bits (76), Expect = 0.19
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 17/68 (25%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKK-----------------KKKKKKEEEKKKKKKKK 43
+ +K KK KKKKKKK++++K +K EEE + +
Sbjct: 267 YDVSEMVKFKKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRKDVEEENARLEDSP 326
Query: 44 KKKKKKKK 51
KK+K++++
Sbjct: 327 KKRKEEQE 334
Score = 32.8 bits (75), Expect = 0.30
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEK--------KKKKKKKKKKKKKKKR 52
G + +KK+++ K++ K E + K KK KKKKKK+
Sbjct: 229 GGSTDDEAEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKK 285
Score = 32.0 bits (73), Expect = 0.47
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 13/64 (20%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKK-----------KKKKKEEEKKKKKKKKKKKKKKKKRLY 54
R + KKK K + + K KK KKKKKKKKK++K +
Sbjct: 240 RQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKP--KKKKKKKKKRRKDLDEDEL 297
Query: 55 LPTS 58
P +
Sbjct: 298 EPEA 301
Score = 31.7 bits (72), Expect = 0.61
Identities = 12/53 (22%), Positives = 30/53 (56%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
+ E R + KK+++E + K+K+++ +++ K ++K+++ K K L
Sbjct: 30 TKESRDAAAYENWKKRQEEAEAKRKREELREKIAKAREKRERNSKLGGIKTLG 82
Score = 31.7 bits (72), Expect = 0.64
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K KK KK++KKKKK++K E+E + + + ++
Sbjct: 273 VKFKKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRK 313
Score = 30.9 bits (70), Expect = 0.99
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKK 38
LK KK++KKK+ E KK +K+KE +
Sbjct: 95 LKKSKKRQKKKEAERKKALLLDEKEKERAAEY 126
Score = 30.5 bits (69), Expect = 1.6
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 11/55 (20%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEE-----------KKKKKKKKKKKKKKKKRLYL 55
K K ++K E+ K K E+ KK KK++KKK+ ++KK L L
Sbjct: 61 KIAKAREKRERNSKLGGIKTLGEDDDDDDDTKAWLKKSKKRQKKKEAERKKALLL 115
Score = 30.1 bits (68), Expect = 2.0
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKK 40
KK KK++KKKE ++KK +KE+E+ +
Sbjct: 96 KKSKKRQKKKEAERKKALLLDEKEKERAAEY 126
Score = 29.3 bits (66), Expect = 3.5
Identities = 27/98 (27%), Positives = 33/98 (33%), Gaps = 38/98 (38%)
Query: 12 KKKKKKKKEEKKKKK-------------------------KKKKK-------------KE 33
K+K KK E KKKK KKKK E
Sbjct: 176 KEKDKKNLELKKKKPDYDPDDDDKFNKRSILSKYDEEIEGKKKKSDNLFTLDSGGSTDDE 235
Query: 34 EEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKKAHMV 71
EKK+++ KKK K T P S Y+ + MV
Sbjct: 236 AEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMV 273
Score = 28.6 bits (64), Expect = 5.1
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
KK KK +KKK+ ++KK ++K+K++ +
Sbjct: 96 KKSKKRQKKKEAERKKALLLDEKEKERAAEY 126
Score = 28.6 bits (64), Expect = 5.5
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
KK KK+++KK+ ++KK +EK+K++ +
Sbjct: 96 KKSKKRQKKKEAERKKALLLDEKEKERAAEY 126
Score = 27.8 bits (62), Expect = 9.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 18 KKEEKKKKKKKKKKKEEEK 36
K K K +K+ KK EEEK
Sbjct: 585 KGSGKMKTEKRLKKIEEEK 603
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 38.9 bits (91), Expect = 0.001
Identities = 17/53 (32%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK-KKKRLYL 55
EGR K K+K ++ K K +K++ +K+K+K+E K + +K++ + +KK+
Sbjct: 63 EGRKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEA 115
Score = 36.2 bits (84), Expect = 0.007
Identities = 12/50 (24%), Positives = 33/50 (66%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ R + +KK K+K ++++ K KK++ +K++E++++ K + +K++
Sbjct: 56 TAESKRPEGRKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKER 105
Score = 30.4 bits (69), Expect = 0.68
Identities = 12/36 (33%), Positives = 28/36 (77%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ K+ E +KK K+K ++++ K KK++ +K+K+K+++
Sbjct: 58 ESKRPEGRKKAKEKLRRDKLKAKKEEAEKEKEKEER 93
Score = 30.0 bits (68), Expect = 1.00
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK--KKKKKKKRL 53
L KK++ +K+KE++++ K + E+E+ + +KKK K K++K++
Sbjct: 72 LRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKKI 124
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 40.5 bits (95), Expect = 0.001
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ +KK K K KK +K KK + +K K K+ KKK
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKV 811
Score = 39.7 bits (93), Expect = 0.002
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
R + K K K KK K KK K +K K K+ KKK
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812
Score = 39.7 bits (93), Expect = 0.002
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ +KK K K +K +K KK + +K K K+ KKK
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKV 811
Score = 39.0 bits (91), Expect = 0.004
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
KK K K KK+ +K KK K ++ K K+ KKK
Sbjct: 771 GEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812
Score = 39.0 bits (91), Expect = 0.004
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+KK K K ++ +K KK K ++ K K+ KKK
Sbjct: 771 GEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812
Score = 38.2 bits (89), Expect = 0.006
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 9/59 (15%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKK---------EEEKKKKKKKKKKKKKKKKRLYLPT 57
KT ++K KK +K K+++ KK EKK K K KK +K K+ T
Sbjct: 736 KTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKT 794
Score = 36.3 bits (84), Expect = 0.024
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ +KK K K K++ +K KK K ++ K K+ KKK
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812
Score = 36.3 bits (84), Expect = 0.026
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
G+ K+++ KK E + +KK + + KK +K KK K +
Sbjct: 748 GKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQ 795
Score = 33.6 bits (77), Expect = 0.18
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 8 KTKKKKKKKKKKEEKKK----------KKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K KK K+++ KK +KK K K +K +K KK K +K
Sbjct: 744 KGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIA 798
Score = 32.0 bits (73), Expect = 0.53
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
E + K K KK +K KK K +K K K+ KKK
Sbjct: 772 EKKAKPKAAKKDARK---AKKPSAKTQKIAAATKAKRAAKKKVA 812
Score = 30.1 bits (68), Expect = 2.3
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 8 KTKKKKKKKKKKEEKKKK-------KKKKKKKEEE 35
KK +K KK K +K K+ KKK E
Sbjct: 779 AAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 28.9 bits (65), Expect = 4.1
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
G+ +K KK K+ K+++ KK E + +KK K K K+
Sbjct: 734 VGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKK 782
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 38.7 bits (91), Expect = 0.001
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK------KKKKKKKKKRLYL 55
K KKKKKKKKK+ E ++KKKK EE+K+ +K KK + YL
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAALLAAIKKVPLLKGYL 135
Score = 35.6 bits (83), Expect = 0.013
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+K K K+++KKKKKKK+ + EEKKKK +++K+ +K
Sbjct: 71 VKVPKLNDAYFKRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQK 115
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 40.2 bits (94), Expect = 0.001
Identities = 14/43 (32%), Positives = 30/43 (69%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
++ + K KEEK K+++ +KK++E+ + K+K++K ++KK
Sbjct: 392 TDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 39.8 bits (93), Expect = 0.001
Identities = 13/44 (29%), Positives = 32/44 (72%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+T ++ + K +E+K K+++ +KK++E+ + K+K++K ++KK
Sbjct: 391 ETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 39.4 bits (92), Expect = 0.002
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K + K + EE + K K++K K+EE +KK+K++ + K+K++
Sbjct: 384 KLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQ 428
Score = 39.0 bits (91), Expect = 0.003
Identities = 13/43 (30%), Positives = 29/43 (67%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K + +E + K K++K K+EE +KK+K++ + K+K+++
Sbjct: 387 EVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQK 429
Score = 38.6 bits (90), Expect = 0.003
Identities = 15/46 (32%), Positives = 30/46 (65%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+L K + ++ E K K++K K++E EKK+K++ + K+K++K
Sbjct: 384 KLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQK 429
Score = 37.1 bits (86), Expect = 0.010
Identities = 14/50 (28%), Positives = 30/50 (60%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
L+ K + K + E+ + K K++K ++E+ +KK+K++ + K+KR
Sbjct: 378 LQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKR 427
Score = 36.7 bits (85), Expect = 0.016
Identities = 9/44 (20%), Positives = 29/44 (65%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ ++ + + K++K K+++ E+++K++ + K+K++K +R
Sbjct: 389 KDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDER 432
Score = 36.3 bits (84), Expect = 0.019
Identities = 9/49 (18%), Positives = 33/49 (67%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
G +K + ++ + + K++K K+++ ++++K++ + K+K++K +++
Sbjct: 385 LGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERK 433
Score = 35.9 bits (83), Expect = 0.024
Identities = 12/48 (25%), Positives = 30/48 (62%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ + K + ++ E K K++K K+++ E+K+K++ + K+K++K
Sbjct: 382 TKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQK 429
Score = 34.8 bits (80), Expect = 0.055
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+L+ KK + K E ++ + K KEE+ K+++ +KK+K++ +
Sbjct: 373 EYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADE 422
Score = 34.0 bits (78), Expect = 0.12
Identities = 10/36 (27%), Positives = 28/36 (77%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKK 39
E + K +K K+++ +K++K++ + K+K++++++KK
Sbjct: 399 EAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 39.8 bits (93), Expect = 0.001
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E + K + + KKK E KKK + K + + K +K K
Sbjct: 198 EAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAK 245
Score = 37.9 bits (88), Expect = 0.006
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E K + KKK + E KKK + KKK + K K + K
Sbjct: 190 EAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAA 237
Score = 35.6 bits (82), Expect = 0.037
Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKK---KKKKEEEKKKKKKKKKKKKKKK 50
E K + KKK E + KKK KKK E K K + K
Sbjct: 187 AEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAA 237
Score = 34.4 bits (79), Expect = 0.073
Identities = 11/48 (22%), Positives = 17/48 (35%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E + K + KKK E K K + + +K K +K
Sbjct: 206 EAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAA 253
Score = 34.0 bits (78), Expect = 0.098
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E + K + + K E KKK + + KKK + KKK + K K
Sbjct: 182 EAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAK 229
Score = 33.6 bits (77), Expect = 0.12
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K + KKK + E KK + KKK E + K + KKK +
Sbjct: 162 KAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEA 205
Score = 33.6 bits (77), Expect = 0.14
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 6 RLKTKKKKK-----KKKKKEEKKKKKKKKKKKEEEKKKKKKK--KKKKKKKKKRL 53
RLK +K++ +KK+ EE K+ K+K+ EE K K K + + KR
Sbjct: 102 RLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRA 156
Score = 33.2 bits (76), Expect = 0.17
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
KKK + K K + K E+ K +K K
Sbjct: 216 KKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKA 255
Score = 32.9 bits (75), Expect = 0.22
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K + KKK + E KK + KK+ E + K + KKK
Sbjct: 154 KRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKK 202
Score = 32.5 bits (74), Expect = 0.30
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
KKK + K K + K E+ K +K K +
Sbjct: 216 KKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAEV 259
Score = 32.1 bits (73), Expect = 0.37
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K K + + K+ KK + KKK E + KK + KKK
Sbjct: 146 KAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKK 186
Score = 32.1 bits (73), Expect = 0.44
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 8 KTKKKKKKKKKKEEKKKKKKK---KKKKEEEKKKKKKKKKKKK 47
K + KKK E + K KKK E E KKK + KKK
Sbjct: 176 AKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218
Score = 32.1 bits (73), Expect = 0.45
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
E K + KKK + E K + KKK E + KKK + KKK
Sbjct: 174 EAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218
Score = 31.7 bits (72), Expect = 0.50
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 10 KKKKKKKKKKEEKKKKKKK----KKKKEEEKKKKKKKKKKKKKKKK 51
KK + KKK E + KK KKK E E K + KKK + +
Sbjct: 161 KKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAE 206
Score = 30.9 bits (70), Expect = 0.83
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 8 KTKKK---KKKKKKKEEKKKK---KKKKKKKEEEKKK----KKKKKKKKKKKKKR 52
+ KKK + K E KKK + KKK E KKK K K + K
Sbjct: 182 EAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKA 236
Score = 30.9 bits (70), Expect = 0.83
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E + K + + KK E KKK + + K + KKK + + KKK
Sbjct: 166 EAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAA 213
Score = 30.9 bits (70), Expect = 0.93
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K K + E K+ KK E KKK + + KK
Sbjct: 146 KAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAA 180
Score = 30.5 bits (69), Expect = 1.4
Identities = 13/42 (30%), Positives = 33/42 (78%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
++K K+ EE++KKK++++ +E ++K+ ++++ K+ +K+RL
Sbjct: 70 QQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERL 111
Score = 30.2 bits (68), Expect = 1.6
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 8 KTKKKKKKKKKKEEKKKKK-----KKKKKKEEEKKKKKKKKKKKKKKKK 51
K K + + KK + KKK K E +KK + + KKK + K
Sbjct: 168 KKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAK 216
Score = 30.2 bits (68), Expect = 1.8
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 10 KKKKKKKKKKEEKKKKKK---KKKKKEEEKKKKKKKKKKKKKKKKR 52
K+ K+K+ EE K K K + E K+ KK + KK+
Sbjct: 125 KQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKK 170
Score = 30.2 bits (68), Expect = 1.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K + KKK + E K + KK+ E + KKK + KKK
Sbjct: 177 KKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218
Score = 30.2 bits (68), Expect = 1.9
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 10 KKKK----KKKKKKEEKKKK---KKKKKKKEEEKKKKKKKKKKKKKKK 50
KKK KK E KKK + K E KKK + + KKK +
Sbjct: 167 AKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAE 214
Score = 29.8 bits (67), Expect = 2.0
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
K K + K + + K +K K +K K
Sbjct: 216 KKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKA 255
Score = 29.8 bits (67), Expect = 2.1
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K K K E + K+ KK + KKK + + KK
Sbjct: 138 AAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAA 180
Score = 29.0 bits (65), Expect = 3.5
Identities = 11/48 (22%), Positives = 29/48 (60%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E + K ++++ K+ E+++ +++KK+ EE K+ K+K+ ++
Sbjct: 91 ELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAA 138
Score = 29.0 bits (65), Expect = 3.8
Identities = 9/43 (20%), Positives = 27/43 (62%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
++++ K+ ++E+ +++KK+ EE K+ K+K+ ++ +
Sbjct: 98 AEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAK 140
Score = 28.6 bits (64), Expect = 5.3
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ LK K+ ++ K K K + + K KK + KKK +
Sbjct: 126 QAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAE 172
Score = 28.6 bits (64), Expect = 5.7
Identities = 9/44 (20%), Positives = 33/44 (75%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ ++++KKK++++ ++ ++K+ E+E+ K+ +K++ +++K+
Sbjct: 75 KRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKK 118
Score = 27.8 bits (62), Expect = 9.0
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 10 KKKKKKKKKKEEKKKKKKK---KKKKEEEKKKK-----KKKKKKKKKKK 50
K+ KK + KKK + KK E KKK K + KKK
Sbjct: 154 KRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKK 202
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 38.6 bits (90), Expect = 0.002
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
EG++ KK K K KK KK + +KK E + + +KK
Sbjct: 111 EGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKA 152
Score = 36.7 bits (85), Expect = 0.006
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K KK K K KK KK E EKK + + + +KK
Sbjct: 113 KVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKA 152
Score = 35.1 bits (81), Expect = 0.022
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
KK K K K+ KK + +KK E + + +KK
Sbjct: 114 VNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKA 152
Score = 35.1 bits (81), Expect = 0.023
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K K KK K + KK KK + E+K + + + +KK
Sbjct: 110 KEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKA 152
Score = 31.3 bits (71), Expect = 0.42
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K++K+ K KK K K KK +K + +KK + + +
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAE 145
Score = 30.1 bits (68), Expect = 1.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K++KE K KK K K ++ KK + +KK + R
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEAR 143
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain.
This presumed domain is found at the N-terminus of
Ribosomal L30 proteins and has been termed RL30NT or
NUC018.
Length = 71
Score = 36.4 bits (85), Expect = 0.002
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK+K+ E+ + K+ KK+ KK +KKK+K KR
Sbjct: 2 LLKKRKRNEKLRAKRAKKR-----AAKKAARKKKRKLIFKR 37
Score = 34.9 bits (81), Expect = 0.005
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
KK+K+ +K + ++ KK+ KK ++K+K K+ +K
Sbjct: 4 KKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEK 40
Score = 33.0 bits (76), Expect = 0.024
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 22 KKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
KK+K+ +K ++ KK+ KK +KKK++L
Sbjct: 2 LLKKRKRNEKLRAKRAKKRAAKKAARKKKRKLIF 35
Score = 33.0 bits (76), Expect = 0.025
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
+ KK+K+ +K K+ KK+ KK KKK+K K+ +K
Sbjct: 1 SLLKKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEK 40
Score = 31.8 bits (73), Expect = 0.068
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
SL + K +K + K+ K+ KK +KKK++ K+ +K K+ + ++
Sbjct: 1 SLLKKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERDE 52
Score = 30.7 bits (70), Expect = 0.15
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKK------KEEEKKKKKK-KKKKKKKKKKRLYLP 56
L+ K+ KK+ KK +KKK+K K KE ++ + + K++ KKK Y+P
Sbjct: 12 LRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERDEIRLKREAKKKGNFYVP 68
>gnl|CDD|204792 pfam11947, DUF3464, Protein of unknown function (DUF3464). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 137 to
196 amino acids in length.
Length = 149
Score = 38.1 bits (89), Expect = 0.002
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIP 60
+K+ E K+ +KK K + K K K+KK K KR + IP
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASESGIP 50
Score = 34.2 bits (79), Expect = 0.036
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+K+ E K+ +KK K + K K K+KK K K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRA 43
Score = 29.6 bits (67), Expect = 1.4
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
K + K+ +K+ K +K K ++K+KK K K+
Sbjct: 6 KRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 38.9 bits (91), Expect = 0.002
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKK--KKKKKKKKKKKKKKRLYLPTS 58
+ E + K KKK+K KE K++K+++KK K+ E++ +++ KK K KKK++
Sbjct: 167 LVDEKQKKKSAKKKRKLYKELKERKEREKKLKKVEQRLELQRELMKKGKGKKKKIVKDKD 226
Query: 59 IPLSHYFKK 67
+ + +KK
Sbjct: 227 GKVVYKWKK 235
Score = 35.0 bits (81), Expect = 0.036
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 7/53 (13%)
Query: 7 LKTKKKKKKKKKKEEKK-------KKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
LK +K+++KK KK E++ KK K KKK+ K K K K KK++KR
Sbjct: 187 LKERKEREKKLKKVEQRLELQRELMKKGKGKKKKIVKDKDGKVVYKWKKERKR 239
Score = 32.0 bits (73), Expect = 0.38
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK 42
+E RL+ +++ KK K ++KK K K K + KK++K+
Sbjct: 200 VEQRLELQRELMKKGKGKKKKIVKDKDGKVVYKWKKERKR 239
Score = 30.8 bits (70), Expect = 0.88
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEK 36
+ L+ L K K KKKK ++K K K KKE ++
Sbjct: 204 LELQRELMKKGKGKKKKIVKDKDGKVVYKWKKERKR 239
Score = 29.3 bits (66), Expect = 2.3
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
L R + + + + +K +K+KKK K++ K K+ K++K+++KK
Sbjct: 148 ELLDRRENRPRISQLEKTSLVDEKQKKKSAKKKRKLYKELKERKEREKK 196
Score = 29.3 bits (66), Expect = 2.9
Identities = 11/46 (23%), Positives = 30/46 (65%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ + + + + ++ +K+KKK ++K+K K+ K++K+++K+L
Sbjct: 152 RRENRPRISQLEKTSLVDEKQKKKSAKKKRKLYKELKERKEREKKL 197
Score = 28.1 bits (63), Expect = 6.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
++E + + + +K ++K+KKK KKK+K K L
Sbjct: 151 DRRENRPRISQLEKTSLVDEKQKKKSAKKKRKLYKEL 187
Score = 27.7 bits (62), Expect = 7.5
Identities = 11/44 (25%), Positives = 27/44 (61%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+++ + + + +K +K+K++ KKK+K K+ K++K+R
Sbjct: 151 DRRENRPRISQLEKTSLVDEKQKKKSAKKKRKLYKELKERKERE 194
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 39.7 bits (92), Expect = 0.002
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLS 62
E+K KK KKK+KKE+EK++ K KKK+ + K L P S
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPAS 238
Score = 39.3 bits (91), Expect = 0.003
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTS 58
+K +K EKK KK KKK+K+E++K++ K KKK+ + K L L
Sbjct: 184 SKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALD 233
Score = 38.5 bits (89), Expect = 0.004
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLP 56
+ K + ++ KK K KKKK++K+KEE+KKKKK + P
Sbjct: 261 SEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQP 313
Score = 37.4 bits (86), Expect = 0.010
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIP 60
K+ +K +++ KK KKK+KK++E+++ K KKK+ + K L L S
Sbjct: 185 KSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPA 237
Score = 36.6 bits (84), Expect = 0.018
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+T K +K +KK KK KKK+++EK+K++ K KKK+ +
Sbjct: 182 ETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEG 224
Score = 35.4 bits (81), Expect = 0.036
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+S + K + +E KK K KKKK+ +EK++KKKKKK +
Sbjct: 254 VSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 35.0 bits (80), Expect = 0.061
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K +K +KK KK KK+E+K+K+K++ K KKK+ +
Sbjct: 181 AETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEG 224
Score = 34.7 bits (79), Expect = 0.074
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 7 LKTKKKKKKKKK-KEEKKKKKKKKKKKEEEKKK 38
KK KK KKK K+EK+K++ K KKKE E K
Sbjct: 194 AVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 34.3 bits (78), Expect = 0.084
Identities = 9/33 (27%), Positives = 25/33 (75%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK 43
K +++++ ++ +K K++KKK+E+EK+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 33.5 bits (76), Expect = 0.16
Identities = 10/33 (30%), Positives = 25/33 (75%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K +EE++ +++ +K K E+KK++K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 33.5 bits (76), Expect = 0.16
Identities = 10/33 (30%), Positives = 25/33 (75%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K EE+++ +++ +K + EKKK++K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 32.7 bits (74), Expect = 0.28
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
++ G + + K + E+ KK K KKK++ K+K++KKKKKK +
Sbjct: 253 TVSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 32.3 bits (73), Expect = 0.40
Identities = 10/30 (33%), Positives = 24/30 (80%)
Query: 23 KKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K +++++ ++ EK K++KKK++K+K+ +R
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRR 112
Score = 32.3 bits (73), Expect = 0.40
Identities = 9/31 (29%), Positives = 26/31 (83%)
Query: 22 KKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K +++++ +++ E+ K++KKK++K+K+ ++R
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRR 113
Score = 32.0 bits (72), Expect = 0.45
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEE 35
E + K KKK+KK+K++E+ K KKK+ + +
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEVEGFKS 227
Score = 32.0 bits (72), Expect = 0.54
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+K + E K +K E+K KK KKK+KK+K+K+R
Sbjct: 176 QKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKER 214
Score = 31.6 bits (71), Expect = 0.73
Identities = 9/35 (25%), Positives = 27/35 (77%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K E++++ +++ +K++ +KKK++K+K+ +++ L
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSL 117
Score = 31.2 bits (70), Expect = 0.92
Identities = 8/33 (24%), Positives = 24/33 (72%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
K +++++ ++ +K K++KKK E++K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 30.8 bits (69), Expect = 1.0
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
T + +E K + ++ KK + KKKK++K+K++KKKK+
Sbjct: 253 TVSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKK 296
Score = 30.8 bits (69), Expect = 1.1
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTS 58
T + + K+ + ++ KK K +++K++K+K++KKKKKK S
Sbjct: 255 SGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHS 306
Score = 30.4 bits (68), Expect = 1.4
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEK 36
RL+ K++KKK++KE++ +++ E ++
Sbjct: 93 RLEKDKREKKKREKEKRGRRRHHSLGTESDE 123
Score = 30.4 bits (68), Expect = 1.4
Identities = 7/34 (20%), Positives = 26/34 (76%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKK 40
+K +++++ +++ E+ K++KKK++K++ +++
Sbjct: 82 VKLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 30.4 bits (68), Expect = 1.6
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+L +K + + K +K +KK ++ KKK+KK+K+K++ K +
Sbjct: 172 KLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDK 218
Score = 30.4 bits (68), Expect = 1.7
Identities = 8/33 (24%), Positives = 24/33 (72%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
K +++++ ++ +K K++KK+ EK+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 30.4 bits (68), Expect = 1.7
Identities = 8/33 (24%), Positives = 25/33 (75%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K ++E + +++ +K K+E++K++K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 30.0 bits (67), Expect = 2.0
Identities = 7/33 (21%), Positives = 25/33 (75%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK 42
K +++++ ++ +K K++KKK+++E++ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 29.6 bits (66), Expect = 2.5
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEE 35
R + +K K++KKK+E++K+ +++ E
Sbjct: 91 RQRLEKDKREKKKREKEKRGRRRHHSLGTE 120
Score = 29.6 bits (66), Expect = 2.7
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K + + K EK +KK ++ KKK+KK+K+K++ K K+
Sbjct: 177 KHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKK 219
Score = 28.9 bits (64), Expect = 4.3
Identities = 7/33 (21%), Positives = 25/33 (75%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKK 38
+L+ +++ +++ +K++++KKK++K+K+ +
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 28.9 bits (64), Expect = 5.2
Identities = 8/30 (26%), Positives = 20/30 (66%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKE 33
E R + + +K K++KK+ +K+K+ +++
Sbjct: 87 ERRHRQRLEKDKREKKKREKEKRGRRRHHS 116
>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755). This
family is predominated by ORFs from Circoviridae. The
function of this family remains to be determined.
Length = 122
Score = 37.4 bits (87), Expect = 0.002
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+L+ ++K+K+++K + KKK+KK + + KK KK+++
Sbjct: 60 QLQQPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 33.2 bits (76), Expect = 0.057
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ ++K+K++++ + KKK+KK + KK KK+++
Sbjct: 62 QQPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 30.5 bits (69), Expect = 0.43
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK-------KKKKKKKKKRLYLPTS 58
KT + ++ ++ ++K+K+++K + KKK+KK KK KKR +S
Sbjct: 50 KTSQLIHLSQQLQQPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSSSS 107
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 39.9 bits (93), Expect = 0.002
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 12/61 (19%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK------------KKKKKKKKKK 51
E ++ T+++ ++KKKKEEK K+K+ KK K +K+ K K KK +KK +K
Sbjct: 9 EKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRK 68
Query: 52 R 52
R
Sbjct: 69 R 69
Score = 35.6 bits (82), Expect = 0.040
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+KK +++ E+KKKK++K K++E KK K +K+ K K + +
Sbjct: 6 SEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQ 50
Score = 35.3 bits (81), Expect = 0.050
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKK-KEEEKKKKKKKKKKKKKKKK 51
G + +KK +EE ++KKKK++K KE+E KK K +K+ K K +
Sbjct: 1 GSRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQ 48
Score = 31.0 bits (70), Expect = 0.97
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
+ +KK E++ ++KKKK EEK K+K+ KK K +K+
Sbjct: 6 SEAEKKILTEEELERKKKK---EEKAKEKELKKLKAAQKEAKA 45
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 38.9 bits (91), Expect = 0.002
Identities = 18/50 (36%), Positives = 35/50 (70%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
M + + K K K ++ +K + + K+KKK+KK+EEKKKK+ ++ +++ +K
Sbjct: 305 MISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEK 354
Score = 38.5 bits (90), Expect = 0.003
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKK--KEEEKKKKKKKKKKKKKKKKRLYLPTS 58
R K + K+KK+EKKK++KKKK+ + EE+ +K + + K++ K + L TS
Sbjct: 318 ERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQATDKEENKTVALGTS 373
Score = 38.1 bits (89), Expect = 0.005
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ K++ K K ++ +K + E K+KKK+KKK++KKKK++
Sbjct: 303 FEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQI 345
Score = 37.7 bits (88), Expect = 0.007
Identities = 17/53 (32%), Positives = 35/53 (66%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ L + K+K K K + + +K + K+K++EKKK++KKKK+ ++ ++R+
Sbjct: 300 ILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERI 352
Score = 36.6 bits (85), Expect = 0.014
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 1 MSLEGRLKTKKKKKKKKKK------EEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
L+ ++K K + K+ KK K+K K K E + +K + K+KKK+KK+
Sbjct: 280 EKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKK 337
Score = 36.2 bits (84), Expect = 0.019
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
L+ + + K+K + K ++ +K E K+KKK+KKK++KKKK+
Sbjct: 294 KRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQ 344
Score = 35.0 bits (81), Expect = 0.051
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
+ + K + K K ++ +K + + K+KKK+KKK++KKK+
Sbjct: 294 KRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQI 345
Score = 33.9 bits (78), Expect = 0.10
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 6 RLKTKKKKKKKKKKEEKKK---KKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+L+ K K K + K KK + K + K K ++ +K + K
Sbjct: 281 KLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEK 331
Score = 31.2 bits (71), Expect = 0.77
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K ++K K K + K+ KK E K+K K K ++ ++L
Sbjct: 280 EKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKL 324
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein
7 homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 37.3 bits (87), Expect = 0.003
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Query: 8 KTKKKKKKKKKKEE---------KKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ ++K++K+K+ E KK ++ K +KE K +K+KKKKKKK+
Sbjct: 34 EEEEKEEKEKEAEPDEDGWVTVTKKGRRPKTARKESVAAKAAEKEKKKKKKKELK 88
Score = 30.7 bits (70), Expect = 0.49
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 12/53 (22%)
Query: 9 TKKKKKKKKKKEEK-------KKKKKKK-----KKKEEEKKKKKKKKKKKKKK 49
+K+KKKKKKKE K ++ K+ + KK EE+KK+ K +K K
Sbjct: 75 AEKEKKKKKKKELKNFYRFQIRESKRNELAELRKKFEEDKKRIALLKAARKFK 127
Score = 30.3 bits (69), Expect = 0.66
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK 42
+G + KK ++ K ++ K +K++++KKKK+ K
Sbjct: 50 DGWVTVTKKGRRPKTARKESVAAKAAEKEKKKKKKKELK 88
Score = 29.2 bits (66), Expect = 1.3
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 19/56 (33%)
Query: 17 KKKEEKKKKKKKKKKKEEE------KKKKKKK-------------KKKKKKKKKRL 53
K++EE+K++K+K+ + +E+ KK ++ K K+KKKKKKK L
Sbjct: 32 KEEEEEKEEKEKEAEPDEDGWVTVTKKGRRPKTARKESVAAKAAEKEKKKKKKKEL 87
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many
hypothetical proteins.
Length = 98
Score = 36.3 bits (84), Expect = 0.003
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
++ KK+KKKKK+ K + K KK +++ KKK + + ++ K+R
Sbjct: 12 RDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRR 63
Score = 35.9 bits (83), Expect = 0.004
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK+KKKKK+ + + K KK ++++KKK + + ++ K++R
Sbjct: 21 IKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRR 64
Score = 35.5 bits (82), Expect = 0.006
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 10/52 (19%)
Query: 12 KKKKKKKKEEK----------KKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K++KK +K +K KK+KKKKK+ + + K KK +KK KKK
Sbjct: 1 KEEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDE 52
Score = 35.1 bits (81), Expect = 0.009
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
KK+KKKKK K + K KK ++K KKK + + ++ KR
Sbjct: 21 IKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRR 64
Score = 33.6 bits (77), Expect = 0.027
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K+KKKKK+ + + K KK +K+++KK + + ++ K+++
Sbjct: 21 IKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRR 64
Score = 33.2 bits (76), Expect = 0.037
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+K +KKKKK+ K + K KK +KK+++K + + ++ K+++
Sbjct: 21 IKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRR 64
Score = 26.3 bits (58), Expect = 9.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKK 40
R + K KK ++K KKK + + EE K+++
Sbjct: 30 RTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRR 64
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 38.8 bits (91), Expect = 0.004
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ KK+ KK +E+ ++ + + +KKEEE +K K K K KK
Sbjct: 98 EELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKL 140
Score = 38.8 bits (91), Expect = 0.004
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
L+ LK ++K ++ + E +KK+++ +K K + K KK KK
Sbjct: 99 ELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSN 147
Score = 35.8 bits (83), Expect = 0.030
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
++ KK+ KK E+K ++ + + +++E++ +K K K K K+L
Sbjct: 98 EELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLA 141
Score = 35.8 bits (83), Expect = 0.030
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFK 66
LK + KK ++K ++ + + +KK+++ E+ K K K KK KK L + L
Sbjct: 100 LKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEA--LKGLNY 157
Query: 67 KA 68
K
Sbjct: 158 KK 159
Score = 35.8 bits (83), Expect = 0.032
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+K+KK EK +K+ K+ E + K +K+ K+ +K+
Sbjct: 411 DAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQ 451
Score = 35.8 bits (83), Expect = 0.032
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
+ + KK ++K ++ E + +KK+++ +K + K K KK KK L
Sbjct: 101 KKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLS 149
Score = 34.6 bits (80), Expect = 0.068
Identities = 12/42 (28%), Positives = 28/42 (66%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
++ + + + EE KK+ KK ++K E+ + + +KK+++ +K K
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAK 129
Score = 33.8 bits (78), Expect = 0.12
Identities = 12/43 (27%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 8 KTKKKKKK-KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+ + + + ++ K+E KK ++K ++ E E +KK+++ +K K K
Sbjct: 89 ENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNK 131
Score = 33.8 bits (78), Expect = 0.15
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
+ + ++ KKE KK ++K ++ + E +KK+++ +K K K + +
Sbjct: 93 IEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAW 137
Score = 33.4 bits (77), Expect = 0.17
Identities = 12/43 (27%), Positives = 27/43 (62%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ + ++ KK+ +K ++K ++ + E EKK+++ +K K K K
Sbjct: 93 IEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDK 135
Score = 33.4 bits (77), Expect = 0.20
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+K+KK ++ +K+ K+ E E K +K+ K+ +K+
Sbjct: 411 DAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQ 451
Score = 33.1 bits (76), Expect = 0.24
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+E K KK ++K ++ E + +KK+++ ++ + K K KK KK
Sbjct: 97 IEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDS 146
Score = 32.7 bits (75), Expect = 0.35
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
++EKK +K E+E K+ + + K +K+ K L
Sbjct: 411 DAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKEL 448
Score = 31.1 bits (71), Expect = 1.00
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKK-KKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
LE ++ K+++ +K K + K KK KK + + K KK K++L
Sbjct: 114 LEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNFKEKL 165
Score = 29.2 bits (66), Expect = 3.4
Identities = 7/39 (17%), Positives = 25/39 (64%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
++ E + + ++ KK+ ++ ++K ++ + + +KK++ L
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELE 126
Score = 28.8 bits (65), Expect = 5.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K ++ +K K K +K KK KK + K KK K+K L
Sbjct: 121 KEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNFKEKLL 166
Score = 28.8 bits (65), Expect = 5.5
Identities = 8/38 (21%), Positives = 25/38 (65%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
++ + E + ++ KK+ K+ E+K ++ + + +KK+++
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEEL 125
Score = 28.1 bits (63), Expect = 9.1
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ +K K K + KK KK E K KK K+K +
Sbjct: 123 EELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNFKEKLLK 167
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The
family functions as a highly conserved exonuclease that
is required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing
and export.
Length = 134
Score = 36.5 bits (85), Expect = 0.004
Identities = 13/43 (30%), Positives = 35/43 (81%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K+K++++KK +E+ K+K+++++ EE K+ ++++K++ +K+ K
Sbjct: 29 KRKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKE 71
Score = 32.7 bits (75), Expect = 0.089
Identities = 16/51 (31%), Positives = 36/51 (70%), Gaps = 5/51 (9%)
Query: 8 KTKKKKKKKKKKEEKKKKKKK-----KKKKEEEKKKKKKKKKKKKKKKKRL 53
K K++++KK ++E K+K++++ K+ +EE K++ +K+ K++K+ K L
Sbjct: 29 KRKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLL 79
Score = 29.2 bits (66), Expect = 1.7
Identities = 15/66 (22%), Positives = 37/66 (56%), Gaps = 19/66 (28%)
Query: 8 KTKKKKKKK-------------------KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K KK KKK K+K++++KK +++ K++E +++ +++K+ +++
Sbjct: 1 KKKKAKKKGVEEVVFDKEARKEYLTGFHKRKQQRRKKAQEEAKEKEREERIEERKRIREE 60
Query: 49 KKKRLY 54
+K+ L
Sbjct: 61 RKQELE 66
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 38.6 bits (89), Expect = 0.005
Identities = 13/49 (26%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK---KKKKKKRL 53
+ K +++K++ + ++ K+++ KKE+E++++ +K K+ KKRL
Sbjct: 1025 RIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRL 1073
Score = 37.0 bits (85), Expect = 0.015
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK------KKKKKKKR 52
R+K +++K++ + + K+++ KK+KE E++ +K KK+ KKKR
Sbjct: 1025 RIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
Score = 35.5 bits (81), Expect = 0.040
Identities = 13/42 (30%), Positives = 28/42 (66%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
K++ K +EEK++ + ++ KEEE KK+K+++++ +K
Sbjct: 1023 KERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDN 1064
Score = 33.2 bits (75), Expect = 0.24
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK 43
M R K ++ KK+K++E++ +K KE KK+ KKK+
Sbjct: 1035 MESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
Score = 32.8 bits (74), Expect = 0.28
Identities = 9/40 (22%), Positives = 28/40 (70%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K++ K ++++E+ + ++ K++E KK+K+++++ +K
Sbjct: 1023 KERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIH 1062
Score = 31.2 bits (70), Expect = 0.86
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
+E + K+++ KK+KE +++ +K +E KK+ KKK+
Sbjct: 1035 MESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
>gnl|CDD|221712 pfam12687, DUF3801, Protein of unknown function (DUF3801). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 158 and 187 amino
acids in length. This family includes the PcfB protein.
Length = 137
Score = 36.5 bits (85), Expect = 0.005
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ KK KK++ E+ +KK KK KEE+ KKK++K K K KKK
Sbjct: 94 EFTAKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
Score = 36.1 bits (84), Expect = 0.006
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK KK+++EK +KK KK +EE+ KKK++K K K KK+
Sbjct: 97 AKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
Score = 35.3 bits (82), Expect = 0.014
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
KK KK++ +K +KK KK K+++ KKK++K K K KKK
Sbjct: 93 KEFTAKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
Score = 32.2 bits (74), Expect = 0.16
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K+ KK KKE+ +K +KK K+ ++++ KKK++K K K +
Sbjct: 93 KEFTAKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNK 135
Score = 28.4 bits (64), Expect = 3.0
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKK 30
S+ +LK K+++ KKKE K K K KKK
Sbjct: 109 SVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are approximately 90 amino acids in
length. There are two completely conserved L residues
that may be functionally important.
Length = 70
Score = 35.0 bits (81), Expect = 0.005
Identities = 15/35 (42%), Positives = 28/35 (80%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK 42
K K KKK+ K +EEK++++++ +K+EE K+++K K
Sbjct: 21 KLKAKKKELKAEEEKREEEEEARKREERKEREKNK 55
Score = 34.2 bits (79), Expect = 0.008
Identities = 15/47 (31%), Positives = 33/47 (70%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
+L+ L K K KK+E K +++K++++EE +K++++K+++K K
Sbjct: 9 TLKDMLNADLLAKLKAKKKELKAEEEKREEEEEARKREERKEREKNK 55
Score = 32.7 bits (75), Expect = 0.036
Identities = 13/32 (40%), Positives = 26/32 (81%)
Query: 21 EKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K KKK+ K EEEK++++++ +K++++K+R
Sbjct: 20 AKLKAKKKELKAEEEKREEEEEARKREERKER 51
Score = 29.2 bits (66), Expect = 0.48
Identities = 13/37 (35%), Positives = 29/37 (78%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K +KK+ K +++K+EEE++ +K++++K+++K K
Sbjct: 19 LAKLKAKKKELKAEEEKREEEEEARKREERKEREKNK 55
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 38.0 bits (88), Expect = 0.005
Identities = 19/43 (44%), Positives = 21/43 (48%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
TKK KKK +E+K KK KE K KK K K KK
Sbjct: 4 TKKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKK 46
Score = 37.2 bits (86), Expect = 0.008
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KT ++KK KK K+ K KK + K KK K KK K
Sbjct: 11 KTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTK 54
Score = 36.9 bits (85), Expect = 0.011
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+KK KK K+ K KK K K KK K KK K
Sbjct: 14 EEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKS 55
Score = 36.5 bits (84), Expect = 0.013
Identities = 18/45 (40%), Positives = 20/45 (44%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
KK KKK EEKK KK +E K KK K K K+
Sbjct: 3 ETKKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKA 47
Score = 36.5 bits (84), Expect = 0.015
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ KK KK ++ K KK K K KK K KK K K
Sbjct: 14 EEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVK 57
Score = 35.7 bits (82), Expect = 0.023
Identities = 16/44 (36%), Positives = 17/44 (38%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K KK KE K KK K + KK K KK K K
Sbjct: 16 KKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTT 59
Score = 35.3 bits (81), Expect = 0.033
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
T++KK KK K+ K KK + K KK K KK K
Sbjct: 13 TEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKS 55
Score = 35.3 bits (81), Expect = 0.038
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSI 59
K KKK ++K+ KK K+ + KK K K KK ++ S+
Sbjct: 5 KKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSV 56
Score = 34.9 bits (80), Expect = 0.044
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK K KK K K KK K E+ + KK+ KK KK+
Sbjct: 43 AAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKE 86
Score = 33.8 bits (77), Expect = 0.097
Identities = 17/50 (34%), Positives = 22/50 (44%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPT 57
KTKK K K KK K KK K + KK K +K + K+ +
Sbjct: 31 KTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAK 80
Score = 33.8 bits (77), Expect = 0.10
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K KK K K KK K K+ + K KK K +K
Sbjct: 27 KETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKT 70
Score = 33.8 bits (77), Expect = 0.11
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ E + KK K+ + KK K K ++ K KK K K KK
Sbjct: 13 TEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKK 62
Score = 33.4 bits (76), Expect = 0.14
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEE------EKKKKKKKKKKKKKKKKR 52
+ K K KK K KK K K + EK + KK+ KK K+
Sbjct: 33 KKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKK 85
Score = 33.0 bits (75), Expect = 0.17
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
T K+ K KK K K KK + KK K K KK K
Sbjct: 24 TTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVK 66
Score = 33.0 bits (75), Expect = 0.19
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTS 58
T K KK K +K K K KK K +K + KK+ KK +
Sbjct: 39 TSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAV 88
Score = 31.8 bits (72), Expect = 0.50
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ K KK K K KK K ++ K K KK K +K
Sbjct: 25 TSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEK 69
Score = 30.7 bits (69), Expect = 0.95
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 6 RLKTKKKKKKKKKKEEK---KKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ KK K K +K K +K + KKE KK KK+ + +
Sbjct: 46 KAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFE 94
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region.
This domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 35.6 bits (83), Expect = 0.005
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK 42
++KKK+KK+ K E K+ KK E+ K + +K
Sbjct: 60 SRKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 32.9 bits (76), Expect = 0.042
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
+KKK+KKE K + K+ KK +++K + +K
Sbjct: 61 RKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 31.8 bits (73), Expect = 0.094
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
+KKK+K+E K + K+ K+ +++K + +K
Sbjct: 61 RKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 31.8 bits (73), Expect = 0.11
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
KK + + +KKK+KK+ + E K+ KK +++K R+
Sbjct: 49 KKAHAAIRADPSRKKKEKKEVKAESKRYNAKKLTLEQRKARV 90
Score = 29.8 bits (68), Expect = 0.58
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK + + +KKK+KK+ K E K+ KK +++K +
Sbjct: 49 KKAHAAIRADPSRKKKEKKEVKAESKRYNAKKLTLEQRKAR 89
Score = 27.9 bits (63), Expect = 2.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
EE KK + + +KKK+KK+ K + K+
Sbjct: 45 EEMYKKAHAAIRADPSRKKKEKKEVKAESKRYNA 78
Score = 26.4 bits (59), Expect = 8.9
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+KK+EKK+ K + K+ +K +++K + +K
Sbjct: 61 RKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 26.4 bits (59), Expect = 9.4
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+KKKE+K+ K + K+ KK +++K + +K
Sbjct: 61 RKKKEKKEVKAESKRYN---AKKLTLEQRKARVAQK 93
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 38.3 bits (89), Expect = 0.005
Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 10 KKKKKKKKKKEEKKKKKKKK---KKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFK 66
K K E K K KK KE +K + K K KR S +S +FK
Sbjct: 164 SSKPPKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFK 223
Query: 67 KAHMVP 72
K
Sbjct: 224 KKTKEK 229
Score = 36.4 bits (84), Expect = 0.017
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
LK KK KKK K+KK+K+E + K++ +++ K+
Sbjct: 206 SLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRD 252
Score = 34.4 bits (79), Expect = 0.086
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
T +K + K + K+ KK KKK K+KK+KK
Sbjct: 191 TTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKE 234
Score = 34.0 bits (78), Expect = 0.11
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 8 KTKKKKKKKKKKEEKKKKKKK--KKKKEEEKKKKKKKKKKKKKKKK 51
KT K K+ KK KKK +EKK+KK+ + K++
Sbjct: 199 KTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEES 244
Score = 33.7 bits (77), Expect = 0.12
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
+ LE + + ++E K ++ +EE ++K+K+K+K+ KK
Sbjct: 253 VILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKK 300
Score = 33.3 bits (76), Expect = 0.16
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 11/64 (17%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKK-----------KKKKKKKKKKKRLYLP 56
KK + KE +K + K + K+ KKK K+KK+K+
Sbjct: 178 VKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASE 237
Query: 57 TSIP 60
+++
Sbjct: 238 STVK 241
Score = 33.3 bits (76), Expect = 0.17
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+ + E++ K ++ EEE ++K+K+K+K+ KK
Sbjct: 264 GLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKK 300
Score = 32.9 bits (75), Expect = 0.23
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ KK +KK K+KK+KK+ E K++ +++ K+
Sbjct: 206 SLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDV 253
Score = 32.5 bits (74), Expect = 0.29
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ KK KKK K+KK+KKE + K++ +++ K+
Sbjct: 209 RNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDV 253
Score = 30.2 bits (68), Expect = 1.6
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK K+KK+KKE + K++ ++E K+ + + +
Sbjct: 221 FFKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLD 266
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 38.2 bits (90), Expect = 0.005
Identities = 13/50 (26%), Positives = 35/50 (70%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
E L K + +K+++E +KK+K+ ++K++E +KK+++ ++ +++ + L
Sbjct: 95 EENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQEL 144
Score = 33.6 bits (78), Expect = 0.15
Identities = 12/44 (27%), Positives = 28/44 (63%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
KK+ + KK+ + K++ K + E +K+ ++++ + +K +KRL
Sbjct: 48 KKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRL 91
Score = 33.2 bits (77), Expect = 0.21
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K + K K+ +EE K+ ++ KK+ E KK+ + K++ K R
Sbjct: 25 RKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLR 70
Score = 32.8 bits (76), Expect = 0.25
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
E ++K +++ K+ +E KK+ + KK+ E K++ K + + +K+ R
Sbjct: 28 IAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELR 78
Score = 32.4 bits (75), Expect = 0.34
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
R K + K K+ ++E K+ ++ KK+ E KK+ + K++ K +
Sbjct: 25 RKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRN 71
Score = 32.4 bits (75), Expect = 0.36
Identities = 18/55 (32%), Positives = 38/55 (69%), Gaps = 5/55 (9%)
Query: 4 EGRLKTKKKKKKKKKKEE---KKKKKKKKKKKEEEKKKKKKKKKKK--KKKKKRL 53
E R + +K +K+ +KEE +K + +K+++E EKK+K+ ++K++ +KK++ L
Sbjct: 79 ERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEEL 133
Score = 31.7 bits (73), Expect = 0.57
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
G KK + K K+ E++ K+ ++ K+E + KK+ + K++ +L
Sbjct: 21 GYFVRKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKL 69
Score = 31.7 bits (73), Expect = 0.57
Identities = 10/44 (22%), Positives = 30/44 (68%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+L+ + +K+ ++++ E +K +K+ +KEE +K + +K++++
Sbjct: 68 KLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEE 111
Score = 31.3 bits (72), Expect = 0.73
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
KK+ + K+E K + + +K+ E + + +K +K+ +K++ L
Sbjct: 55 KKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENL 98
Score = 31.3 bits (72), Expect = 0.86
Identities = 11/46 (23%), Positives = 26/46 (56%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ KK+ + KEE K + + +K+ E++ + +K +K+ +K+
Sbjct: 50 EAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKE 95
Score = 30.1 bits (69), Expect = 1.8
Identities = 11/53 (20%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK---KKKK---KKKKKRL 53
L+ K++ K + + EK+ ++++ + ++ EK+ +K+ +K +K+++ L
Sbjct: 60 LEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEEL 112
Score = 29.0 bits (66), Expect = 3.9
Identities = 9/46 (19%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 10 KKKKKKKKKKEEKKKKKKK--KKKKEEEKKKKKKKKKKKKKKKKRL 53
++++ + +K E++ +K++ +K E +K++++ +KK+K+ +++
Sbjct: 78 RERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQ 123
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p) and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C
gene from Saccharomyces cerevisiae. It is an essential
yeast protein involved in pre-rRNA processing and
ribosome assembly. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 128
Score = 36.1 bits (84), Expect = 0.006
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 12/64 (18%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKK--------KKKKEEEKKKKKK----KKKKKKK 48
+ E K +++KK+K+K++KKKK+ + +KKKEE+ KK K++ +K
Sbjct: 65 AAGEEAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQADLLKKFEEDKERVEKM 124
Query: 49 KKKR 52
K+KR
Sbjct: 125 KEKR 128
Score = 31.5 bits (72), Expect = 0.25
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK------KKKKKKKRL 53
+ +K EE K +++KK++E+KKKKKK+ + ++KKK+
Sbjct: 57 VRGGRKGPAAGEEAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQ 107
Score = 29.2 bits (66), Expect = 1.4
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 31 KKEEEKKKKKKKKKKKKKKKKRLY 54
K EE+KK+K+KKKKKKK+ + Y
Sbjct: 72 KAAEEEKKEKEKKKKKKKELEDFY 95
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 37.2 bits (87), Expect = 0.006
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEE 35
+ +K+KKK KEEKK K++K+K EE
Sbjct: 94 FEEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 32.6 bits (75), Expect = 0.20
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 21 EKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
E++K+KKK KEE+K K++K+K ++
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 32.2 bits (74), Expect = 0.24
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 22 KKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+++K+KKK +EEKK K++K+K ++
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 27.6 bits (62), Expect = 8.6
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 12/55 (21%)
Query: 14 KKKKKKEEKKKKKK------------KKKKKEEEKKKKKKKKKKKKKKKKRLYLP 56
+K KEEK KK +++KE++K K++KK K++K++L P
Sbjct: 68 RKILTKEEKHIIKKLSKCDFTPIYQYFEEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2
domain [General function prediction only].
Length = 1227
Score = 38.2 bits (89), Expect = 0.006
Identities = 22/145 (15%), Positives = 46/145 (31%), Gaps = 20/145 (13%)
Query: 23 KKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKKAHMVPRCNAMRQIYE 82
+K+K +K+K +K K+ ++ + + + K + N Q Y+
Sbjct: 859 SEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSL-KPKLDL---NEALQ-YK 913
Query: 83 HGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVANSW----- 137
G L + + G Y F D + V + P N
Sbjct: 914 SGVLGIQI-LSGEL--PDPGQYLQIFFDDASHPQI------VSSKAPTRGERNGESGDTF 964
Query: 138 -NDHWGDHGTFKILRGENEADIEMG 161
+ TF++ + ++D +
Sbjct: 965 IRELEYSETTFRVTKNAKKSDKVVC 989
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 35.0 bits (81), Expect = 0.006
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKK 39
KKKKKKKKKK E K KK E +
Sbjct: 24 KKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 33.9 bits (78), Expect = 0.014
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKK 38
L KKKKKKKKK E+ K KK E+ +
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 33.9 bits (78), Expect = 0.016
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 21 EKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KKKKKKKKKK E+ K KK + +
Sbjct: 23 VKKKKKKKKKKAEDTAATAKAKKATAEDVSEG 54
Score = 33.9 bits (78), Expect = 0.018
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
K + + KKKKKKKKK+ E K KK
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKAT 47
Score = 31.9 bits (73), Expect = 0.085
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKK 40
KKKKKKKKK+ + K KK + +
Sbjct: 23 VKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 31.2 bits (71), Expect = 0.14
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
KT+ KKKKK++KKK + + +K + +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 29.6 bits (67), Expect = 0.58
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K + +KKKKKKKKK ++ K KK + +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 28.1 bits (63), Expect = 1.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K + K++KKKKKKK + K KK + +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
>gnl|CDD|150240 pfam09495, DUF2462, Protein of unknown function (DUF2462). This
protein is highly conserved, but its function is
unknown. It can be isolated from HeLa cell nucleoli and
is found to be homologous with Leydig cell tumour
protein whose function is unknown.
Length = 82
Score = 35.1 bits (81), Expect = 0.007
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+G LK K K K +KK+K KK K KK + + +K KK
Sbjct: 3 QGALKVKAKGPAAVKAGKKKQKGPKKAGPRVIKPKKAQAVQAQKLKKV 50
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 36.0 bits (84), Expect = 0.007
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 7/49 (14%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK-------KKKKKKRL 53
+ +K+K + K ++++K +EKKKKKKK+ + ++KKK+ L
Sbjct: 57 RGGRKRKAGASRNKAAEERRKLKEKKKKKKKELENFYRFQIREKKKEEL 105
Score = 35.7 bits (83), Expect = 0.007
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 11/55 (20%)
Query: 4 EGRLKTKKKKKKKKKKEE-------KKKKKKK----KKKKEEEKKKKKKKKKKKK 47
E R K K+KKKKKKK+ E ++KKK++ +KK EE+KK+ ++ K +K
Sbjct: 73 EERRKLKEKKKKKKKELENFYRFQIREKKKEELAELRKKFEEDKKRIEQLKAARK 127
Score = 34.5 bits (80), Expect = 0.025
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
+ K+K + K EE++K K+KKKKKKK+ + Y
Sbjct: 57 RGGRKRKAGASRNKAAEERRKLKEKKKKKKKELENFY 93
Score = 33.3 bits (77), Expect = 0.054
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 16/63 (25%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKK----------KKKEE--EKKKK----KKKKKKKKK 48
G + K ++++K KE+KKKKKK+ KKKEE E +KK KK+ ++ K
Sbjct: 65 GASRNKAAEERRKLKEKKKKKKKELENFYRFQIREKKKEELAELRKKFEEDKKRIEQLKA 124
Query: 49 KKK 51
+K
Sbjct: 125 ARK 127
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein
7 (Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal
RNA recognition motif (RRM), also termed RBD (RNA
binding domain) or RNP (ribonucleoprotein domain), and
a C-terminal RRP7 domain.
Length = 118
Score = 35.7 bits (83), Expect = 0.007
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Query: 6 RLKTKKKKKKKKKKEE---------KKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
R + +K++ K+ + E + +K K ++E + K K+K+KKKKKKK+
Sbjct: 33 REEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKE 87
Score = 35.3 bits (82), Expect = 0.011
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK-----KKKKKKKKRL 53
+ +K K ++ + K K+KE++KKKKK+ + + ++KKK+ L
Sbjct: 58 RGGRKGKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEEL 104
Score = 33.8 bits (78), Expect = 0.031
Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 6/47 (12%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK------KKKKKKKK 49
T+ +K K +EE + K K+K+K+++KKK+ + ++KKK++
Sbjct: 57 TRGGRKGKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEE 103
Score = 30.3 bits (69), Expect = 0.50
Identities = 17/50 (34%), Positives = 33/50 (66%), Gaps = 7/50 (14%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKK-------KKKKKKKEEEKKKKKKKKKKK 46
E ++ K K+K+KKKK++K+ + ++KKK++ E +KK ++ KK+
Sbjct: 68 EEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEELAELRKKFEEDKKR 117
Score = 29.1 bits (66), Expect = 1.2
Identities = 12/46 (26%), Positives = 29/46 (63%), Gaps = 6/46 (13%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKK------KKKKKKKK 47
+ +K K +++ + K K+K+KKK+++K+ + ++KKK++
Sbjct: 58 RGGRKGKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEE 103
Score = 26.8 bits (60), Expect = 7.4
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 10/55 (18%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKK------KEEEKKKK----KKKKKKKKKK 49
G+ ++ + K K++EKKKKKKK+ + E+KK++ +KK ++ KK+
Sbjct: 63 GKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEELAELRKKFEEDKKR 117
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 37.0 bits (86), Expect = 0.007
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
K + K + K K K K KK EE+ K++ K + +
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 33.5 bits (77), Expect = 0.13
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
K + K K + K K K KK EE+ K++ K + +
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 32.7 bits (75), Expect = 0.21
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K + K + K K K K K+ E++ K++ K + +
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 32.7 bits (75), Expect = 0.21
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K E K K K K K + KK +++ K++ K + R
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 31.6 bits (72), Expect = 0.43
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK 41
K + K K K K + K KK +++ K E K + +
Sbjct: 94 KPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 31.2 bits (71), Expect = 0.58
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K+ K + K K K K + K KK +++ K++ K
Sbjct: 86 KEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKP 123
Score = 30.8 bits (70), Expect = 0.87
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KE K + K + + K K K KK +++ KR
Sbjct: 86 KEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKR 119
Score = 30.0 bits (68), Expect = 1.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEK 36
K K K K KK EE+ K++ K +
Sbjct: 102 KPKPKPKPVKKVEEQPKREVKPVEPRPAS 130
Score = 29.3 bits (66), Expect = 2.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
K + K K + K K K KK +E+ K++ K + +
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 28.9 bits (65), Expect = 3.4
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 25 KKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSH 63
K + K K + K K K KK +++ K+ + P S
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPRPASP 131
Score = 27.7 bits (62), Expect = 8.0
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K+ K + K K K + + K KK +++ K++ K
Sbjct: 86 KEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKP 123
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 36.4 bits (85), Expect = 0.008
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
KKKK K K K KKK +EE + +++K+KKK K
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHK 38
Score = 36.4 bits (85), Expect = 0.008
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K KK K+ K K KKK +++ E +++K+KKK K K
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHKGLK 41
Score = 36.0 bits (84), Expect = 0.011
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KKKK K+ + K KKK ++E + + +++K+KKK K K
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHKGLK 41
Score = 35.3 bits (82), Expect = 0.022
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
KKKK K+ + K KKK +++ + + +++K+KKK K K
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHKGLK 41
Score = 33.0 bits (76), Expect = 0.11
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 18/68 (26%)
Query: 4 EGRLKTKKKKKKKKK-------KEEKKKKKKKKKKKEEE---KKK--------KKKKKKK 45
E R + +KKK K K + K K + +KK+ KK K KKKK
Sbjct: 27 EARERKRKKKHKGLKSGSRHNEGNTQSKGKGQAQKKDPRIGSKKPIPLGVEEKVKPKKKK 86
Query: 46 KKKKKKRL 53
K KK +L
Sbjct: 87 PKSKKPKL 94
Score = 33.0 bits (76), Expect = 0.13
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 22/70 (31%)
Query: 3 LEGRLKTKKKKKKKK---------KKEEKKKKKKKKKKKE-------------EEKKKKK 40
L+ + +K+KKK K + + K K + +KK+ EEK K K
Sbjct: 24 LDAEARERKRKKKHKGLKSGSRHNEGNTQSKGKGQAQKKDPRIGSKKPIPLGVEEKVKPK 83
Query: 41 KKKKKKKKKK 50
KKK K KK K
Sbjct: 84 KKKPKSKKPK 93
Score = 31.8 bits (73), Expect = 0.29
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 6 RLKTKKKKKKKKKKEE-----KKKKKKKKKK------KEEEKKKKKKKKKKKKKKKKRLY 54
+ K KKK +EE +++K+KKK K + E + K K + +KK R+
Sbjct: 8 KRSKGMAKSKKKTREELDAEARERKRKKKHKGLKSGSRHNEGNTQSKGKGQAQKKDPRIG 67
Query: 55 LPTSIPL 61
IPL
Sbjct: 68 SKKPIPL 74
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1,
thyroid transcription factor 1. In the lungs, the family
binds TTF-1 to form a complex which influences the
expression of the key lung surfactant protein-B (SP-B)
and -C (SP-C), the small hydrophobic surfactant proteins
that maintain surface tension in alveoli.
Length = 150
Score = 36.0 bits (83), Expect = 0.009
Identities = 16/48 (33%), Positives = 38/48 (79%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+L KK+ K++K+E+++K+ K++K+ E+ + KKK+K++++++K+L
Sbjct: 73 KLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERERRRKKL 120
Score = 33.7 bits (77), Expect = 0.050
Identities = 18/51 (35%), Positives = 35/51 (68%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
S E R KKKK +KK+ K++K+++++K+ +++K+ +K + KKK+K
Sbjct: 62 SKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKE 112
Score = 32.9 bits (75), Expect = 0.095
Identities = 14/47 (29%), Positives = 36/47 (76%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ + K++K++++++E K++K+ +K E KKK+K++++++KK K+
Sbjct: 77 KKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERERRRKKLTKK 123
Score = 32.9 bits (75), Expect = 0.11
Identities = 17/48 (35%), Positives = 34/48 (70%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
EG +K+ +K+ K K+ +K +KKKK +EKK+ K++K+++++K+
Sbjct: 45 EGYAVPEKESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKE 92
Score = 32.2 bits (73), Expect = 0.18
Identities = 14/50 (28%), Positives = 36/50 (72%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
E + K +KK+ K+++ ++++K+ K+++E +K + KKK+K+++++R
Sbjct: 68 FEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERERRR 117
Score = 31.8 bits (72), Expect = 0.21
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
++K+ K++KE +K + KKK+KE E+++KK KK K
Sbjct: 89 REKELAKRQKELEKIELSKKKQKERERRRKKLTKKTKS 126
Score = 31.4 bits (71), Expect = 0.29
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 8/50 (16%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEK--------KKKKKKKKKKKKKKKR 52
KK+ K++K E+++K+ K++KE EK K++++++KK KK K
Sbjct: 77 KKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERERRRKKLTKKTKS 126
Score = 31.4 bits (71), Expect = 0.32
Identities = 14/45 (31%), Positives = 32/45 (71%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ + K K+ +K EKKKK +KK+ +++K+++++K+ K++K+
Sbjct: 56 EKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKEL 100
Score = 31.4 bits (71), Expect = 0.35
Identities = 16/45 (35%), Positives = 32/45 (71%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K +K+ K KE++K +KKKK +++E K++K+++++K+ KR
Sbjct: 52 KESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKR 96
Score = 31.0 bits (70), Expect = 0.51
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
R + +K+ K++K+ EK + KKK+K+ E ++KK KK K
Sbjct: 86 REQREKELAKRQKELEKIELSKKKQKERERRRKKLTKKTKS 126
Score = 30.6 bits (69), Expect = 0.51
Identities = 15/47 (31%), Positives = 31/47 (65%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
E K K K+ +K E+KKK +KK+ ++ K+++++K+ K++K+
Sbjct: 53 ESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKE 99
Score = 30.6 bits (69), Expect = 0.67
Identities = 14/45 (31%), Positives = 32/45 (71%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+K+ +K +KKK+ +KK+ K++K E+++K+ K++K+ +K +
Sbjct: 61 SSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIEL 105
Score = 30.6 bits (69), Expect = 0.67
Identities = 11/46 (23%), Positives = 35/46 (76%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ ++K+++++K+ K++K+ +K + ++K+K++++++KK KK +
Sbjct: 80 IAKQRKREQREKELAKRQKELEKIELSKKKQKERERRRKKLTKKTK 125
Score = 30.2 bits (68), Expect = 0.77
Identities = 13/42 (30%), Positives = 31/42 (73%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K ++++K+ K++++ +K + KKK++E+++++KK KK K
Sbjct: 85 KREQREKELAKRQKELEKIELSKKKQKERERRRKKLTKKTKS 126
Score = 29.5 bits (66), Expect = 1.4
Identities = 14/43 (32%), Positives = 30/43 (69%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
R + +++K+ K+++E +K + KKK++E ++++KK KK K
Sbjct: 84 RKREQREKELAKRQKELEKIELSKKKQKERERRRKKLTKKTKS 126
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 37.4 bits (87), Expect = 0.009
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 13/59 (22%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKK-------------KKKKEEEKKKKKKKKKKKKKKKKR 52
+K +K++ K+K ++K KK KK + +E E K+ KKKKKKKKKKK+
Sbjct: 10 VKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKK 68
Score = 36.2 bits (84), Expect = 0.024
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 18/62 (29%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEE------------------KKKKKKKKKKKKKK 49
+ + K++K++ K++ KKK KK KK+ + K+ KKKKKKKKKK
Sbjct: 7 ENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKK 66
Query: 50 KK 51
KK
Sbjct: 67 KK 68
Score = 32.0 bits (73), Expect = 0.44
Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 19/79 (24%)
Query: 4 EGRLKTKKKKKKKKKKEEK-------------------KKKKKKKKKKEEEKKKKKKKKK 44
+ TKKK KK KK + KKKKKKKK+++KK +
Sbjct: 17 NKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYD 76
Query: 45 KKKKKKKRLYLPTSIPLSH 63
SH
Sbjct: 77 LAYDLPVVWSSAAFQDNSH 95
Score = 32.0 bits (73), Expect = 0.53
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKK---------KKKKKKKKKKK 51
E + KKKKKKKKKK++K + + +K +++
Sbjct: 48 QEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSAAFQDNSHIRKLGNWPEQEW 107
Query: 52 RLYLPTSIPLSHYFKK 67
+ P +IP+S FK
Sbjct: 108 KQTQPPTIPVSKQFKD 123
Score = 30.8 bits (70), Expect = 0.97
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPL 61
L + ++ + K+ ++KKKKKKKKKKK + + I
Sbjct: 40 LAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSAAFQDNSHIRK 98
Score = 30.1 bits (68), Expect = 1.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ + + K++K++ K+K KKK KK KK
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKD 32
Score = 28.5 bits (64), Expect = 5.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
E + + K++K++ ++K KKK KK KK
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKD 32
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 37.4 bits (87), Expect = 0.010
Identities = 13/55 (23%), Positives = 30/55 (54%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTS 58
++ K +K + ++ ++ +++ +E K KKKK+KKK+ +K + +S
Sbjct: 393 IAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEKFRWFVSS 447
Score = 33.5 bits (77), Expect = 0.18
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
E +K + KK EE +++ ++ + +KKK+KKK+ +K
Sbjct: 396 YESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEK 440
Score = 32.4 bits (74), Expect = 0.35
Identities = 11/52 (21%), Positives = 26/52 (50%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPL 61
+K + KK ++ +++ ++ + KKKK+KKK+ +K + +
Sbjct: 401 TALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEKFRWFVSSDGFLV 452
Score = 31.6 bits (72), Expect = 0.72
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
++ K K+ E +KK +K+ KK E K +K++ + ++ +K
Sbjct: 276 ERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEEL 319
Score = 30.8 bits (70), Expect = 1.1
Identities = 12/52 (23%), Positives = 30/52 (57%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
L+ + + K K+ + E+K +K+ KK + + EK++ + ++ +K ++ R
Sbjct: 271 LDEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
Score = 30.4 bits (69), Expect = 1.3
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 16/63 (25%)
Query: 6 RLKTKKK--KKKKKKKEEKKKKKKKKKKKEEEKKKKK--------------KKKKKKKKK 49
+LK K ++ + +E + K E+ + KK K KKKK+K
Sbjct: 374 KLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRK 433
Query: 50 KKR 52
KK
Sbjct: 434 KKE 436
Score = 30.4 bits (69), Expect = 1.5
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
LK + K +K + KK ++ E+ ++ K KKKK+K+
Sbjct: 385 QLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKE 436
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4;
Provisional.
Length = 191
Score = 36.3 bits (84), Expect = 0.010
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK 42
KT KKKK +K++ KK KKKKK++EE + +
Sbjct: 49 KTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
Score = 34.4 bits (79), Expect = 0.041
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
+KK KKKK KKK KK KKK++EK++ + +
Sbjct: 47 SKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
Score = 32.5 bits (74), Expect = 0.17
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ K+ KKKK +KK+ KK KKKKK+K++ +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPEL 80
Score = 32.5 bits (74), Expect = 0.18
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ KK KKKK +KKK +K KKKKK+K++ +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPEL 80
Score = 31.3 bits (71), Expect = 0.45
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
KK KKKK +KKK KK KK++++K++ + +
Sbjct: 48 KKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
Score = 30.9 bits (70), Expect = 0.68
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
K +KKK K+ KKKKK+K++ E ++ ++ ++ KK Y
Sbjct: 54 KKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDY 100
Score = 30.5 bits (69), Expect = 0.86
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ KK K++K +KKK K+ +KKKK+K++ + +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
Score = 30.5 bits (69), Expect = 0.90
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+ KK KK++ +KKK KK ++KKK+K++ + +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
Score = 29.8 bits (67), Expect = 1.6
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ KK ++KK +KKK ++ KKKKK+K++ + + L
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEEL 85
Score = 29.0 bits (65), Expect = 3.0
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 22 KKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLP 56
+ KK KKK+ +KKK KK KKKKK++ +P
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVP 78
Score = 28.2 bits (63), Expect = 5.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ KT KK KKKKK++E+ + ++ + E+ ++ KK + K
Sbjct: 60 KKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKV 105
Score = 28.2 bits (63), Expect = 5.3
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTS 58
KT +KKK KK +KKKK+K++ + ++ ++ ++ KK LP
Sbjct: 55 KTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKV 105
Score = 27.9 bits (62), Expect = 5.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTS 58
E+ + KK KK++ +KKK KK KKKKK
Sbjct: 41 EDVEIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPE 79
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 37.3 bits (87), Expect = 0.011
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLP---TSIPLSHYF 65
K K+ + EKKK+ K EE+ KK++KK+K K+++K+R+ + +IPL+
Sbjct: 638 KIKQIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKERIEIAETWDTIPLAQAI 695
Score = 28.4 bits (64), Expect = 7.1
Identities = 9/45 (20%), Positives = 24/45 (53%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
KK K+ + EE++++ + + E K K++++ ++ L+
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFS 268
Score = 28.4 bits (64), Expect = 7.6
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKK 39
KKK+ K E+K KK++KK+K + ++K+
Sbjct: 649 KKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 28.4 bits (64), Expect = 7.6
Identities = 12/63 (19%), Positives = 27/63 (42%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLS 62
+E +TK K++++ E+ ++K++ +K + K + K+KK P
Sbjct: 243 IETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEELFWFEKPWP 302
Query: 63 HYF 65
Sbjct: 303 TLL 305
Score = 28.0 bits (63), Expect = 9.3
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKK 40
+KKK+ K ++K KK++KK++ ++++K+
Sbjct: 647 IEKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of
topoisomerase IA [General function prediction only].
Length = 298
Score = 36.6 bits (85), Expect = 0.013
Identities = 18/45 (40%), Positives = 18/45 (40%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
L R KK KK K KK KK KK K KK KK
Sbjct: 252 LAERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 35.5 bits (82), Expect = 0.030
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
L +++ K K+ KK K KK KK KK K KK K+
Sbjct: 251 LLAERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 36.9 bits (86), Expect = 0.014
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K KK K K+ +++K +EE K K + +K
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 34.6 bits (80), Expect = 0.084
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKK 37
RLK K+ +++K KEE K K +K
Sbjct: 16 RLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 30.3 bits (69), Expect = 1.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K KK+ K K+ +EE+ K++ K K
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKG 43
Score = 28.0 bits (63), Expect = 7.8
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K KK+ K K+ ++E+ K++ K K R
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGR 44
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 36.5 bits (84), Expect = 0.017
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 10 KKKKKKKKKKEE------KKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSH 63
KK K +K K E ++++KKK+K+ KK K KK++K K+++ S
Sbjct: 542 KKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKSSSA 601
Query: 64 YFKKA 68
+F K
Sbjct: 602 FFAKL 606
Score = 36.1 bits (83), Expect = 0.023
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K +K K + + +K ++++KKK+K KK K KK++K K
Sbjct: 545 KAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGK 588
Score = 33.8 bits (77), Expect = 0.13
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
S +T K ++++KKK +++ KK K ++E+K K+K KK
Sbjct: 549 KSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKS 598
Score = 32.3 bits (73), Expect = 0.43
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
R + KKK+K++ K+ K KK++K +E+ KK K
Sbjct: 561 RERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKSSSAFFAKL 606
Score = 31.9 bits (72), Expect = 0.56
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K ++++KKK+K+ KK K KK+ + K+K KK
Sbjct: 559 KNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKSSS 600
Score = 30.3 bits (68), Expect = 1.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK K EK K + + K E++KKK+K++ KK
Sbjct: 541 YKKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVT 578
Score = 29.6 bits (66), Expect = 2.5
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK K +K + + + K +++ ++K+K++ KK K KK
Sbjct: 541 YKKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKE 583
Score = 29.6 bits (66), Expect = 2.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
EE KK K +K + E + K ++++KKK+K
Sbjct: 538 EEIYKKMKAIEKSKTELDRTDKNRERRKKKRK 569
Score = 28.8 bits (64), Expect = 4.4
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
+ + + ++KKK+K++ +K K KK++K ++K KK
Sbjct: 554 LDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKSSS 600
Score = 28.8 bits (64), Expect = 4.4
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ K K++ KK + KK++K K+K + KK K ++ K
Sbjct: 565 KKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKSSSAFFAKLQETK 610
>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.
Length = 108
Score = 34.5 bits (80), Expect = 0.017
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 22 KKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K++KKKKKKK E E +KK+KK+ +++K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRK 67
Score = 33.8 bits (78), Expect = 0.028
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 10 KKKKKKKKKKEEK---KKKKKKKKKKEEEKKKKKK 41
K++KKKKKKK E +KK+KK+ E+ K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 30.7 bits (70), Expect = 0.38
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 5 GRLKTKKKKKKKKK--KEEKKKKKKKKKKKEEEKK 37
R K KKKKK + + E+K+KK+ +++K ++K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 35.6 bits (83), Expect = 0.017
Identities = 10/46 (21%), Positives = 31/46 (67%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
L+ + KK +++K+E +K+ + + K E +K+++++++ ++K+
Sbjct: 124 ELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHA 169
Score = 27.6 bits (62), Expect = 8.2
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 11/62 (17%)
Query: 3 LEGRLKTKKKKKK--KKKKEEKKKKKKKKKKKEEEKKKKKKK---------KKKKKKKKK 51
LE +K +++K+ +K+ E + K + +K+EEE+++ ++K KK+ ++ K
Sbjct: 125 LEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEIAFLKKQNQQLKS 184
Query: 52 RL 53
+L
Sbjct: 185 QL 186
Score = 27.2 bits (61), Expect = 9.7
Identities = 11/52 (21%), Positives = 31/52 (59%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
LE R+ + K + +K E+++++ ++K+ +E KK+ ++ K + +++
Sbjct: 138 ELEKRVAELEAKLEAIEKREEEERQIEEKRHADEIAFLKKQNQQLKSQLEQI 189
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 36.3 bits (84), Expect = 0.018
Identities = 14/52 (26%), Positives = 19/52 (36%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
S K K+ ++ +K K +EK K K KK KK R
Sbjct: 162 SSRPSTPHLLKAKEGPSRRAKKAAKLSSTASSGDEKSPKSKAAPKKAGKKMR 213
Score = 35.1 bits (81), Expect = 0.036
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K K + EE KK KK E K K+ K+K++KK +
Sbjct: 103 KQAKSPKAMRTFEESKKSKKTVDSMIERKPKEPGLKRKQRKKAQ 146
Score = 34.3 bits (79), Expect = 0.070
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
LE K + K K + E+ KK KK E+K K+ K+K++KK
Sbjct: 96 ELEKESKKQAKSPKAMRTFEESKKSKKTVDSMIERKPKEPGLKRKQRKKA 145
Score = 33.6 bits (77), Expect = 0.099
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
S LK K+ ++ KK K ++ K K KK KK +K
Sbjct: 166 STPHLLKAKEGPSRRAKKAAKLSSTASSGDEKSPKSKAAPKKAGKKMRK 214
Score = 32.0 bits (73), Expect = 0.41
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
L K+ ++ K+ K E+ K K KK KK +K
Sbjct: 170 LLKAKEGPSRRAKKAAKLSSTASSGDEKSPKSKAAPKKAGKKMRK 214
Score = 28.9 bits (65), Expect = 3.9
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK 43
+ +K K K KK KK +K + + +
Sbjct: 191 ASSGDEKSPKSKAAPKKAGKKMRKWDLDGDEDDDAV 226
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The
function is unclear.
Length = 151
Score = 35.3 bits (81), Expect = 0.018
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K++K+ K + +K KKKK+K EKK K KKK++K K
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGK 50
Score = 33.8 bits (77), Expect = 0.056
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIP 60
K++KE K + +K KK++EK +KK K KKK++K +P P
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGKIPEHEP 56
Score = 33.4 bits (76), Expect = 0.077
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K++K+ K + +K KKKK+K E+K K KKK++K K
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGK 50
Score = 33.0 bits (75), Expect = 0.091
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKK 39
KT+ +K KKKKE+ +KK K KKKEE+ K
Sbjct: 19 KTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGK 50
Score = 31.1 bits (70), Expect = 0.42
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K++K+ K + +K KKKK+K E++ K KKK++K K
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGK 50
Score = 27.6 bits (61), Expect = 7.1
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKK 40
G+ +++K KKKK+K +KK K KKK EEK K
Sbjct: 18 GKTQSQKSDKKKKEKVSEKKGKSKKK---EEKPNGK 50
>gnl|CDD|219947 pfam08639, SLD3, DNA replication regulator SLD3. The SLD3 DNA
replication regulator is required for loading and
maintenance of Cdc45 on chromatin during DNA
replication.
Length = 437
Score = 36.3 bits (84), Expect = 0.018
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K EK+ KKK K+ + + K++K++K+KK KK
Sbjct: 124 TKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKK 157
Score = 36.3 bits (84), Expect = 0.022
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
K +KE KKK K+ + + K++K++K+KK KK+ + L
Sbjct: 124 TKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLPVLL 164
Score = 31.3 bits (71), Expect = 0.67
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
R +K+ KKK + + + K++K +K+KK KK+ L+L
Sbjct: 119 ELDRFTKFEKEYKKKLLKRSQNLDRSKRRKR---RKRKKNKKQDLPVLLDLHL 168
Score = 30.2 bits (68), Expect = 1.8
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
++LE TK +K+ KKK ++ + + K+++ K+KK KK+
Sbjct: 116 LALELDRFTKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLPVL 163
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 35.6 bits (83), Expect = 0.019
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEE 35
+ +K+KKK KEEKK K++K K EE
Sbjct: 95 FEAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 32.6 bits (75), Expect = 0.21
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 22 KKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+ +K+KKK +EEKK K++K K ++
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 30.6 bits (70), Expect = 0.79
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK 43
T + + +KE+KK K++KK +E+K K ++
Sbjct: 89 TPIYEYFEAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 30.2 bits (69), Expect = 1.1
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 21 EKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
E +K+KKK KEE KK K++K K ++
Sbjct: 96 EAEKEKKKAMSKEE--KKAIKEEKDKLEEP 123
>gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated.
Length = 822
Score = 36.5 bits (85), Expect = 0.019
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
T+K+KK+K+ K E + K K E+ K +
Sbjct: 765 TEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAAD 807
Score = 34.2 bits (79), Expect = 0.097
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+K+KK+K+ + + + K K EK K +
Sbjct: 765 TEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAAD 807
Score = 33.1 bits (76), Expect = 0.25
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K+KK+K+ K E + K K E+ K +
Sbjct: 767 KQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPD 809
Score = 32.7 bits (75), Expect = 0.31
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K +K+KK+KE K + + K + +K K +
Sbjct: 761 KCNYTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLT 804
Score = 32.7 bits (75), Expect = 0.32
Identities = 7/44 (15%), Positives = 12/44 (27%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
++K + + K K +K K E K
Sbjct: 773 ESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVD 816
Score = 32.7 bits (75), Expect = 0.35
Identities = 6/47 (12%), Positives = 15/47 (31%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K +K+ K + + + K +K K+ +
Sbjct: 767 KQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAA 813
Score = 32.3 bits (74), Expect = 0.47
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K KK+K+ K + E K K +K ++ +
Sbjct: 765 TEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDA 810
Score = 31.9 bits (73), Expect = 0.53
Identities = 8/44 (18%), Positives = 11/44 (25%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K + + K K +K K E K
Sbjct: 772 KESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKV 815
Score = 30.7 bits (70), Expect = 1.4
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 6 RLKTKKKKKKK---KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
R+K + K +K+KK+K+ + E + K K +K K
Sbjct: 745 RVKGGFGDELGCCNNPKCNYTEKQKKEKESKSELEALKGVGAKTAEKLKD 794
Score = 30.7 bits (70), Expect = 1.5
Identities = 5/47 (10%), Positives = 11/47 (23%), Gaps = 2/47 (4%)
Query: 4 EGRLKTKK--KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K K +K K+ + + + K +
Sbjct: 776 SELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGVSADR 822
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 36.5 bits (84), Expect = 0.020
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 17/84 (20%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK---------KKKKRLY-- 54
+ + K+K K+K K+ K + E E ++ K++++K KKK+ Y
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYKV 851
Query: 55 ------LPTSIPLSHYFKKAHMVP 72
LP + K VP
Sbjct: 852 DNMTRILPQQSRYISFIKDDRFVP 875
Score = 33.0 bits (75), Expect = 0.24
Identities = 9/46 (19%), Positives = 23/46 (50%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
T K + K+K ++K K+ K E + + ++ K+++++
Sbjct: 788 STTIKAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEK 833
>gnl|CDD|227238 COG4901, COG4901, Ribosomal protein S25 [Translation, ribosomal
structure and biogenesis].
Length = 107
Score = 34.1 bits (78), Expect = 0.020
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K + K+KK +K K K KKK KKKKK++ +R
Sbjct: 1 MAPKSQLSKEKKAEKAKAGTAKDKKKWSKKKKKEEARR 38
Score = 33.0 bits (75), Expect = 0.060
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K + K+KK +K K + KKK KKKKK++ +
Sbjct: 1 MAPKSQLSKEKKAEKAKAGTAKDKKKWSKKKKKEEAR 37
Score = 31.4 bits (71), Expect = 0.16
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
K + K+KK EK K K KK+ KKKKK++ +
Sbjct: 1 MAPKSQLSKEKKAEKAKAGTAKDKKKWSKKKKKEEAR 37
Score = 31.0 bits (70), Expect = 0.24
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK 43
+ K + K+KK E+ K K KKK +KKKK++ +
Sbjct: 1 MAPKSQLSKEKKAEKAKAGTAKDKKKWSKKKKKEEAR 37
Score = 31.0 bits (70), Expect = 0.28
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K + ++KK +K K ++KKK KKKKK++ +
Sbjct: 1 MAPKSQLSKEKKAEKAKAGTAKDKKKWSKKKKKEEAR 37
Score = 29.9 bits (67), Expect = 0.65
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K + +EKK +K K +++KK KKKKK++ +
Sbjct: 1 MAPKSQLSKEKKAEKAKAGTAKDKKKWSKKKKKEEAR 37
Score = 29.9 bits (67), Expect = 0.73
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K+KK +K K K KKK KKK++E+ ++ ++ K R
Sbjct: 9 KEKKAEKAKAGTAKDKKKWSKKKKKEEARRAVTVDEELLDKIR 51
Score = 29.5 bits (66), Expect = 0.94
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K K KKK KKKKK++ ++ ++ K +K+ +++
Sbjct: 14 EKAKAGTAKDKKKWSKKKKKEEARRAVTVDEELLDKIRKEVPRER 58
Score = 29.5 bits (66), Expect = 1.00
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
K + KE+K +K K K+++K KKKKK++ +
Sbjct: 1 MAPKSQLSKEKKAEKAKAGTAKDKKKWSKKKKKEEAR 37
Score = 28.0 bits (62), Expect = 3.0
Identities = 10/46 (21%), Positives = 23/46 (50%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K+KK +K + K KKK K+++K++ ++ ++ +
Sbjct: 4 KSQLSKEKKAEKAKAGTAKDKKKWSKKKKKEEARRAVTVDEELLDK 49
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 36.3 bits (84), Expect = 0.020
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 4 EGRLKTKKKKKKKKK----KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK------KRL 53
+L K + E+ + + ++ K+E EKK+K KKK +K+K +RL
Sbjct: 320 IPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRKRKVNPVSNNFRRL 379
Query: 54 YLPTS 58
L
Sbjct: 380 KLRNK 384
Score = 29.4 bits (66), Expect = 3.0
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKK---------KKKKKKKKKKKK 51
+ G + + + ++ +E+ +KK+K KKK ++K K + K+KK K
Sbjct: 332 LGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRKRKVNPVSNNFRRLKLRNKRKKGFKG 391
Query: 52 R 52
R
Sbjct: 392 R 392
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast)
and GNL3L (human) are putative GTPases which are
required for growth and play a role in processing of
nucleolar pre-rRNA. This family contains a potential
nuclear localisation signal.
Length = 80
Score = 33.4 bits (77), Expect = 0.021
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK 42
+ + K +KK E +K +K+ KK K KKKK
Sbjct: 1 RLRYKIEKKVAEHHRKLRKEAKKNPTWKSKKKK 33
Score = 33.0 bits (76), Expect = 0.026
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 31/79 (39%)
Query: 6 RLKTKKKKK-----KKKKKEEKK------KKKK--------------------KKKKKEE 34
RL+ K +KK +K +KE KK KKKK KK+K+EE
Sbjct: 1 RLRYKIEKKVAEHHRKLRKEAKKNPTWKSKKKKDPGIPNSFPFKEEILEEIEEKKRKQEE 60
Query: 35 EKKKKKKKKKKKKKKKKRL 53
EK+++K+ +K ++ + ++
Sbjct: 61 EKERRKEARKAERAEARKR 79
Score = 29.9 bits (68), Expect = 0.34
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 22 KKKKKKKKKKKEEEKKKKKKKKKK---KKKKKKRLYLPTSIP 60
+ + K +KK E +K +K+ KK K KKKK +P S P
Sbjct: 1 RLRYKIEKKVAEHHRKLRKEAKKNPTWKSKKKKDPGIPNSFP 42
>gnl|CDD|233605 TIGR01865, cas_Csn1, CRISPR-associated protein Cas9/Csn1, subtype
II/NMEMI. CRISPR loci appear to be mobile elements with
a wide host range. This model represents a protein found
only in CRISPR-containing species, near other
CRISPR-associated proteins (cas), as part of the NMENI
subtype of CRISPR/Cas locus. The species range so far
for this protein is animal pathogens and commensals only
[Mobile and extrachromosomal element functions, Other].
Length = 805
Score = 36.2 bits (84), Expect = 0.021
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
+G K+ K++ KK E K K+ +E K++ + K K RLY
Sbjct: 527 QGTNFGKRNSKERYKKNEDKIKEFASALGKEILKEEPTENSSKNILKLRLYY 578
Score = 29.7 bits (67), Expect = 2.9
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+EE+ K+ KE KK + K K+ K
Sbjct: 524 REEQGTNFGKRNSKERYKKNEDKIKEFASALGK 556
Score = 29.3 bits (66), Expect = 3.9
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLS 62
++E+ K+ K+ +K + K K+ K+ L + S
Sbjct: 524 REEQGTNFGKRNSKERYKKNEDKIKEFASALGKEILKEEPTENSS 568
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 36.1 bits (83), Expect = 0.023
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ K K +KK + ++K +KKK + K K K ++K
Sbjct: 212 EAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAERK 255
Score = 35.3 bits (81), Expect = 0.034
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K + K K E KKK ++ K EE K K + KKK +
Sbjct: 155 KAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEA 198
Score = 34.9 bits (80), Expect = 0.050
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K +K K + E K K +KK + E+K +KKK K K
Sbjct: 201 KAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKA 242
Score = 34.9 bits (80), Expect = 0.056
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K K + KKK + + K E+ K + + K K +KK +
Sbjct: 184 KAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAA 224
Score = 34.9 bits (80), Expect = 0.058
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+K K + E K K +KK + EEK +KKK K K +
Sbjct: 202 AAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADK 244
Score = 34.2 bits (78), Expect = 0.087
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K + + K K E+K + ++K E+KK K K K +
Sbjct: 206 KAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAK 250
Score = 34.2 bits (78), Expect = 0.097
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K + KKK EE K ++ K K E KKK + + K ++
Sbjct: 162 KLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEK 206
Score = 34.2 bits (78), Expect = 0.099
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK + + K EK K + + K K E+K + ++K +KKK
Sbjct: 194 KKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKK 235
Score = 33.8 bits (77), Expect = 0.12
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K + + K E+ K + + K K E++ + ++K +KKK
Sbjct: 189 AAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKA 236
Score = 33.8 bits (77), Expect = 0.12
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K +KK + ++K +KKK K K K K +++
Sbjct: 209 AEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAERK 255
Score = 33.4 bits (76), Expect = 0.16
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E K +K K + + + K +KK + EE+ +KKK K K K
Sbjct: 197 EAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADK 244
Score = 33.4 bits (76), Expect = 0.17
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ K + + K K EKK + ++K EKKK K K K
Sbjct: 204 AEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAA 247
Score = 33.0 bits (75), Expect = 0.23
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+LK + KKK ++ K ++ K K + KKK + + K +K +
Sbjct: 162 KLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAK 208
Score = 32.6 bits (74), Expect = 0.24
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
E + K + KKK + E K +K K + E K K +KK + ++K
Sbjct: 182 EAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEK 228
Score = 32.6 bits (74), Expect = 0.31
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K K ++ K +E K K + KK+ E + K +K K + +
Sbjct: 170 KKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAE 212
Score = 32.2 bits (73), Expect = 0.35
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 10 KKKKKKKKKKEEKKKK---KKKKKKKEEEKKKKKKKKKKKKKKK 50
KK ++ K EE K K KKK E E K +K K + + K
Sbjct: 171 KKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAK 214
Score = 31.8 bits (72), Expect = 0.43
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E + KKK +E K ++ K K E KKK + + K +K
Sbjct: 159 EAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEK 206
Score = 31.8 bits (72), Expect = 0.51
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KKK + + K +K K + + K + EKK + ++K +KK+
Sbjct: 193 KKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKK 235
Score = 31.5 bits (71), Expect = 0.63
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ KKK E + K +K K E E K K +KK + ++K
Sbjct: 185 AKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEK 228
Score = 31.1 bits (70), Expect = 0.86
Identities = 12/43 (27%), Positives = 32/43 (74%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K ++++KKK+E+ ++ K K+ E+E+ K+ +K++ K +++++
Sbjct: 76 KGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQK 118
Score = 31.1 bits (70), Expect = 0.88
Identities = 12/45 (26%), Positives = 31/45 (68%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K ++++K+ +E +K+ + ++K++EE+ +K ++KKK + K
Sbjct: 110 RLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKA 154
Score = 30.7 bits (69), Expect = 1.1
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K + ++K+++++ +K ++KKK E K K + K K
Sbjct: 125 KQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAA 166
Score = 30.7 bits (69), Expect = 1.2
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K+ + ++K++EE+ +K ++KK+ E K K + K K
Sbjct: 125 KQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAA 166
Score = 30.7 bits (69), Expect = 1.2
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 8 KTKKKKKKKKKKEEKKKKKKK---KKKKEEEKKKK---KKKKKKKKKKKKR 52
K K + K K E K K KKK EE K K K + KKK
Sbjct: 146 KKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKA 196
Score = 30.3 bits (68), Expect = 1.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K ++ K K + KKK + + K EK K + + K K +KK
Sbjct: 178 KAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKA 221
Score = 30.3 bits (68), Expect = 1.5
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ ++KKK + K + + K K E KKK ++ K ++ K +
Sbjct: 138 ARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAK 186
Score = 29.9 bits (67), Expect = 1.8
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ + + ++K+++E+ +K ++KKK E K K + K K
Sbjct: 124 EKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAA 166
Score = 29.5 bits (66), Expect = 2.3
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ E + K + K K + K K + KKK EE K ++ K K +
Sbjct: 142 AAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAA 192
Score = 29.1 bits (65), Expect = 3.7
Identities = 12/46 (26%), Positives = 32/46 (69%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
RLK ++++K+ ++ E++ + ++K+++++ K ++KKK + K K
Sbjct: 110 RLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAK 155
Score = 28.4 bits (63), Expect = 6.6
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KKK + + K +K K + + K + +KK + ++K +K+
Sbjct: 190 AAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKK 234
Score = 28.0 bits (62), Expect = 8.5
Identities = 9/40 (22%), Positives = 29/40 (72%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K+ ++E+ K+ +K++ K +E++K+ ++ +K+ + +++
Sbjct: 93 KPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQK 132
Score = 27.6 bits (61), Expect = 9.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K ++++ +K E+KKK + K K E K K + KKK
Sbjct: 132 KQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKK 172
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 36.3 bits (85), Expect = 0.024
Identities = 13/48 (27%), Positives = 31/48 (64%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
LE L+ K ++ + KE +K K++ ++KKE+ ++++ K ++ +K+
Sbjct: 527 ELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE 574
Score = 36.0 bits (84), Expect = 0.026
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPT 57
L K K + E +K+ K +K+E+KKKK+K+K+++ K + +
Sbjct: 593 LRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLS 647
Score = 35.6 bits (83), Expect = 0.041
Identities = 12/48 (25%), Positives = 30/48 (62%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
L+ +++ ++K +E + K+ +K KEE ++KK+K ++++ K +
Sbjct: 524 SLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA 571
Score = 34.4 bits (80), Expect = 0.093
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
E R K K E + +K+ K E+++KKKKK+K+K+++ K
Sbjct: 592 ELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELK 638
Score = 32.9 bits (76), Expect = 0.28
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+K ++ +K K + + +K+ + +KK+KKKKK+K+K+
Sbjct: 590 IKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQE 635
Score = 32.1 bits (74), Expect = 0.52
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 32/89 (35%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKK--------------------------------KKKK 29
L + K+KKKKK+K+++++ K K K
Sbjct: 615 RLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQKGEVLSIPDDKEAIVQAGIMKMKV 674
Query: 30 KKKEEEKKKKKKKKKKKKKKKKRLYLPTS 58
+ EK +K KKKKKKK K + T
Sbjct: 675 PLSDLEKIQKPKKKKKKKPKTVKPKPRTV 703
Score = 30.2 bits (69), Expect = 1.7
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 43/97 (44%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEE--------------------------------- 35
+ +K+ K E+K+KKKKK+K+K+EE
Sbjct: 610 IEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQKGEVLSIPDDKEAIVQAGI 669
Query: 36 ----------KKKKKKKKKKKKKKKKRLYLPTSIPLS 62
+K +K KKKKKKK K P ++ L
Sbjct: 670 MKMKVPLSDLEKIQKPKKKKKKKPKTVKPKPRTVSLE 706
Score = 30.2 bits (69), Expect = 1.9
Identities = 12/42 (28%), Positives = 28/42 (66%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
+ +K K++ ++K+EK ++++ K +E EK+ ++ K+ KK
Sbjct: 543 LKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKK 584
Score = 28.6 bits (65), Expect = 6.0
Identities = 10/47 (21%), Positives = 31/47 (65%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K+ +K K+E ++KK+K ++++++ ++ +K+ ++ K+ K+
Sbjct: 538 EAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKK 584
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 35.4 bits (82), Expect = 0.028
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEE-------EKKKKKKKKKKKKKKKKRLYLPTS 58
L + K+ K KK+ KKK+K K+ E + +++ + K+ KK + Y+P
Sbjct: 12 ELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPGKFYVPAE 71
Query: 59 IPL 61
L
Sbjct: 72 HKL 74
Score = 35.0 bits (81), Expect = 0.038
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK--------KKKKKKKKRL 53
L KK+K +++ + K+ K KKK ++K+K K+ +K +++ RL
Sbjct: 2 LLLKKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRL 56
Score = 33.9 bits (78), Expect = 0.073
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 23 KKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
KK+K +++ + K+ K KKK KKK+K +
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKKRKIYF 36
Score = 31.9 bits (73), Expect = 0.33
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 9/48 (18%)
Query: 21 EKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKKA 68
E KK+K +++ + K+ K KKK KKKR YFK+A
Sbjct: 1 ELLLKKRKARQELAVQVAKQAKAKKKANKKKR---------KIYFKRA 39
>gnl|CDD|221466 pfam12220, U1snRNP70_N, U1 small nuclear ribonucleoprotein of
70kDa MW N terminal. This domain is found in
eukaryotes. This domain is about 90 amino acids in
length. This domain is found associated with pfam00076.
This domain is part of U1 snRNP, which is the pre-mRNA
binding protein of the penta-snRNP spliceosome complex.
It extends over a distance of 180 A from its RNA
binding domain, wraps around the core domain of U1
snRNP consisting of the seven Sm proteins and finally
contacts U1-C, which is crucial for 5'-splice-site
recognition.
Length = 94
Score = 33.4 bits (77), Expect = 0.028
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIP 60
K K + + + +K+E EK++KK+K +KK +++ + + P P
Sbjct: 48 KDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELKEWDPNEDP 94
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 35.8 bits (82), Expect = 0.029
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 15/61 (24%)
Query: 8 KTKKKKKKKKKKEEKKKKKK-----KKKK----------KEEEKKKKKKKKKKKKKKKKR 52
K+K KK+K ++EE+KK K K+KK K+EE+ + KKKKK+ K+K+
Sbjct: 527 KSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKKKKKQIAKQKK 586
Query: 53 L 53
L
Sbjct: 587 L 587
Score = 33.9 bits (77), Expect = 0.13
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
K K KK+K +E++++KK K K+KK KK K KK
Sbjct: 526 NKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQ 570
Score = 33.1 bits (75), Expect = 0.21
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K K KK+K ++++++KK K K+KK KK K K+
Sbjct: 523 KDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKK 567
Score = 30.0 bits (67), Expect = 2.1
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK 43
MS + + KK K KKEE+ + KKKKK+ ++KK KK
Sbjct: 549 MSNKQKKLYKKMKYSNAKKEEQAENLKKKKKQIAKQKKLDSKK 591
Score = 29.7 bits (66), Expect = 2.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K + K KK+K +++EE+K K K+KK K++
Sbjct: 523 KDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKM 560
Score = 28.9 bits (64), Expect = 4.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+K + + K + K KK+K ++EEEKK K K+KK
Sbjct: 511 QGIKYSETSEADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKK 555
Score = 28.1 bits (62), Expect = 7.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
K K + KK+K ++++E++ K K+KK KK Y
Sbjct: 523 KDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKY 562
Score = 28.1 bits (62), Expect = 7.9
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 7/53 (13%)
Query: 6 RLKTKKKKKKKKK-----KEEK--KKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
++ ++++KK K K++K KK K KKEE+ + KKKKK+ K+KK
Sbjct: 534 KVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKKKKKQIAKQKK 586
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 35.7 bits (83), Expect = 0.029
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEK-----KKKKKKKKKKKKKKKRL 53
++K ++ ++E +K++K+ +E++ K K KK K + KRL
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRL 287
>gnl|CDD|192718 pfam11176, DUF2962, Protein of unknown function (DUF2962). This
eukaryotic family of proteins has no known function.
Length = 155
Score = 34.5 bits (80), Expect = 0.030
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
K K KKKK K +K K+ + + K +KKK ++ +K+ L L
Sbjct: 1 KVTKNIAKKKKVLHPKSRKAKQLNRATLRDDKLEKKKAERAEKRSLEL 48
Score = 29.9 bits (68), Expect = 0.95
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 8 KTKKKKKKKKKKEEKKKKKKK--KKKKEEEK--KKKKKKKKKKKKKKKRL 53
TK KKKK K +K K+ + ++K KKK ++ +K+ + RL
Sbjct: 2 VTKNIAKKKKVLHPKSRKAKQLNRATLRDDKLEKKKAERAEKRSLELDRL 51
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 36.2 bits (84), Expect = 0.030
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
G+ + + K+KK E ++K +++ + KK+K KK+ K
Sbjct: 1532 GQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKSN 1578
Score = 35.5 bits (82), Expect = 0.046
Identities = 13/37 (35%), Positives = 26/37 (70%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K E K ++K K+++KK+KKK+++ K+++K R+
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARI 767
Score = 35.1 bits (81), Expect = 0.066
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK 43
K + K +E+ KKKKKK+KKKEEE K+++K +
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 35.1 bits (81), Expect = 0.068
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
+ K EEK KKKKKK+KK+EE+ K+++K +
Sbjct: 732 DAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 34.7 bits (80), Expect = 0.092
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
K + K + ++K KKKKKKE++K+++ K+++K +
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 33.9 bits (78), Expect = 0.15
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+G L++ K+KK + ++K ++ E KK+K KK+ K +
Sbjct: 1533 QGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKSNTEA 1581
Score = 33.5 bits (77), Expect = 0.19
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
K + K E+K KKKKKK+K++E++ K+++K +
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 33.2 bits (76), Expect = 0.22
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
K+KK + ++K ++ E + KK+K KK+ K + L
Sbjct: 1534 GELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKSNTEAELDF 1585
Score = 33.2 bits (76), Expect = 0.24
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK + K + K EE+ KKKKKK+KKK+++ KR
Sbjct: 719 GLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKR 761
Score = 32.4 bits (74), Expect = 0.45
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K + K + ++K KKKKK+E+KK+++ K+++K +
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 32.0 bits (73), Expect = 0.50
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K +KKK +KK + + + +EEK+ + + + K+KK
Sbjct: 1500 KKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKG 1544
Score = 32.0 bits (73), Expect = 0.59
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 22/70 (31%)
Query: 4 EGRLKTKKKKK---KKKKKEEKKKKK-------------------KKKKKKEEEKKKKKK 41
+G + + +KK + + +EEK+ ++K EE+ +
Sbjct: 1507 KGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDI 1566
Query: 42 KKKKKKKKKK 51
KK+K KK+ K
Sbjct: 1567 KKRKNKKQYK 1576
Score = 31.6 bits (72), Expect = 0.64
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKK 38
+ K ++K KK++KK+KKK+++ K EEK +
Sbjct: 729 NGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 31.6 bits (72), Expect = 0.67
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
R K + K ++K KKKKKK+++++++ K+++K +
Sbjct: 726 RNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 30.8 bits (70), Expect = 1.2
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K +KKK EKK + + + +EE++ + + + K+KK L
Sbjct: 1501 KINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNL 1546
Score = 30.8 bits (70), Expect = 1.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK + K + K EEK KKKKKK+KKK+++ +
Sbjct: 717 ISGLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYK 760
Score = 30.8 bits (70), Expect = 1.3
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKK---KKKEEEKKK---KKKKKKKKKKKKKRLYLP 56
L R KT + + +K KE+KK K + K KK + K++ RL
Sbjct: 1030 LTDRTKTIRNQIEKITKEKKKITNTINISPNKTSYDSKIIESSKKIWQILKRRNTRL--- 1086
Query: 57 TSIPLSHYFKK 67
I S+YF K
Sbjct: 1087 --IRKSYYFIK 1095
Score = 30.5 bits (69), Expect = 1.6
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKE 33
+ + KKKKKK+KK+E++ K+++K + E
Sbjct: 738 SDSVEEKTKKKKKKEKKKEEEYKREEKARIE 768
Score = 29.3 bits (66), Expect = 3.5
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK 41
G+ K ++K +KKKKK+KKK++E ++++K +
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 28.5 bits (64), Expect = 5.9
Identities = 11/25 (44%), Positives = 21/25 (84%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEE 34
K KKKKKK+K+++++ K+++K + E
Sbjct: 744 KTKKKKKKEKKKEEEYKREEKARIE 768
Score = 28.1 bits (63), Expect = 9.7
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSI 59
K K + + ++KK KK +E K + + + K L +P +I
Sbjct: 1684 KNKHQINQRYREKKYVDKKNFDESITKHQTITENRDKNHYDLLVPENI 1731
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 35.8 bits (83), Expect = 0.036
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
L+ +L K + K KKE +K ++ KKK E EKK + +++ + K+
Sbjct: 530 LKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKE 578
Score = 35.0 bits (81), Expect = 0.059
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 4 EGRLKTKKKKKKKKKKEEKKK---KKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
E + + + K+K EEK + ++ ++ KKE E+ ++K K+ K+ K+K Y+
Sbjct: 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYI 296
Score = 34.7 bits (80), Expect = 0.083
Identities = 11/45 (24%), Positives = 28/45 (62%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLP 56
+ +K+ + E K+K ++K +E E++ ++ KK+ ++ ++K L
Sbjct: 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK 286
Score = 34.7 bits (80), Expect = 0.086
Identities = 13/46 (28%), Positives = 29/46 (63%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
L+G +K+ KK+ +K ++ +KK + +KK E E++ + K+ ++
Sbjct: 537 LKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEEL 582
Score = 33.5 bits (77), Expect = 0.17
Identities = 15/46 (32%), Positives = 32/46 (69%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ K+ ++K+++ EE KKK K+ +K+ EE +++ + ++ K KK+ L
Sbjct: 329 RIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEEL 374
Score = 33.5 bits (77), Expect = 0.18
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K K + K K+E +K ++ KKK E +KK + +++ + K L
Sbjct: 536 KLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKEL 579
Score = 33.1 bits (76), Expect = 0.25
Identities = 13/52 (25%), Positives = 30/52 (57%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
SL+ L+ ++ KKK + EKK + +++ E K+ ++ + ++ ++RL
Sbjct: 543 SLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERL 594
Score = 33.1 bits (76), Expect = 0.25
Identities = 12/55 (21%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKK--KKKKKKKKKKKRLY 54
LE +++ +++ ++ KKE ++ ++K K+ KE ++K ++ K + ++ L
Sbjct: 256 KLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELR 310
Score = 32.7 bits (75), Expect = 0.28
Identities = 17/57 (29%), Positives = 38/57 (66%), Gaps = 5/57 (8%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKK-----KKKKKKKKKKKKRL 53
+E R+K ++K+++ ++ +KK K+ +K+ +E E++ + K KK++ ++ KKRL
Sbjct: 325 GIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRL 381
Score = 32.7 bits (75), Expect = 0.31
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKK----KKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ + L+ KK+ E+ +K+ +K K++ EEE K + + KK+ K L
Sbjct: 368 KAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKEL 424
Score = 32.7 bits (75), Expect = 0.32
Identities = 13/53 (24%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 3 LEGRLKTKKKKKK--KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
LE R++ KK+ + ++K +E K+ K+K ++ + + ++ + ++ +KRL
Sbjct: 264 LEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRL 316
Score = 32.3 bits (74), Expect = 0.38
Identities = 14/46 (30%), Positives = 31/46 (67%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
L+ + ++ +K+++E KK +K K++ EE +K KK+ +K +K ++
Sbjct: 677 GLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALER 722
Score = 32.3 bits (74), Expect = 0.40
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKK---------------KKKKEEEKKKKKKKKKKK 46
LE +LK ++ +KK EE +K K+K +K +E +KK + +KK
Sbjct: 507 ELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLD 566
Query: 47 KKKKKR 52
+ +++
Sbjct: 567 ELEEEL 572
Score = 32.3 bits (74), Expect = 0.40
Identities = 18/52 (34%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
SLEG + K ++K ++ EE+ ++ KK+ ++ EEK K+ K+ K+K ++ +L
Sbjct: 249 SLEGSKR--KLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKL 298
Score = 32.3 bits (74), Expect = 0.43
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKK-----KKKKKKEEEKKKKKKKKKKKKKKKKR 52
+E K + + K+K E+K ++ ++ KK+ EE ++K K+ K+ K+K +
Sbjct: 239 EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEE 294
Score = 31.6 bits (72), Expect = 0.68
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIP 60
+ L L + + ++ +K ++ KK +K KEE ++++K KK+ +K +K L
Sbjct: 669 LELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKA---LERVEE 725
Query: 61 LSHYFKKAHMVPRCNAMRQIYE 82
L KK + + A+ ++ E
Sbjct: 726 LREKVKKYKALLKERALSKVGE 747
Score = 31.6 bits (72), Expect = 0.75
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
LE R + ++ K KK++ E+ KK+ E+ +K+ ++ +K K++
Sbjct: 355 EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEE 402
Score = 31.2 bits (71), Expect = 1.0
Identities = 11/49 (22%), Positives = 30/49 (61%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+E +K K+K+ ++ +E + + + +EE +K +K+ K+ ++ K++
Sbjct: 191 IEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEE 239
Score = 30.8 bits (70), Expect = 1.2
Identities = 15/57 (26%), Positives = 33/57 (57%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPL 61
GR T++ +K+ ++ + K+ +K+ KE E+K++K +K+ ++ +K I L
Sbjct: 442 GRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKL 498
Score = 30.4 bits (69), Expect = 1.7
Identities = 11/54 (20%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Query: 8 KTKKKKKKKKKKEEK--------KKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ + ++ +K+ + +++ K+ ++KEE ++ KKK K+ +K+ + L
Sbjct: 304 EYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEEL 357
Score = 30.0 bits (68), Expect = 2.0
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 5 GRLKTKKKK--KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
L+ + + + K KKEE ++ KK+ EK +K+ ++ +K K++
Sbjct: 355 EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEE 402
Score = 30.0 bits (68), Expect = 2.1
Identities = 15/57 (26%), Positives = 34/57 (59%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSI 59
LE + + ++ KKK K+ EK+ ++ +++ + E+ K KK++ ++ KK+ P +
Sbjct: 333 LEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKL 389
Score = 29.3 bits (66), Expect = 3.3
Identities = 10/44 (22%), Positives = 26/44 (59%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ K+K+K+ EE ++ + + E +++ +K +K+ K+ + L
Sbjct: 193 ELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEEL 236
Score = 29.3 bits (66), Expect = 3.3
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
L+ RL +K +K+ EE +K K++ +++ + + + KK+ K+ K
Sbjct: 376 RLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELK 425
Score = 29.3 bits (66), Expect = 3.5
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 2 SLEGRLK--TKKKKKKKKKKEEKKKKKK-----KKKKKEEEKKKKKKKKKKKKKKKKRL 53
E RL+ KK K+ +K+ EE +++ + K KK+E E+ KK+ +K +K L
Sbjct: 335 EKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKEL 393
Score = 29.3 bits (66), Expect = 4.0
Identities = 8/46 (17%), Positives = 26/46 (56%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+K K++ ++ +K K+ + ++ KE+EK+ ++ ++ + +
Sbjct: 171 IKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSEL 216
Score = 28.9 bits (65), Expect = 5.1
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K KK++ ++ KK +K +K+ EE +K K++ +++ K
Sbjct: 366 EAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISK 409
Score = 28.9 bits (65), Expect = 5.1
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 3 LEGRLKTKKK-----KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
LE K KK K ++ E +K+ ++ +K+ EE +KK +++ ++ +++ L L
Sbjct: 614 LEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLEL 671
Score = 28.5 bits (64), Expect = 5.9
Identities = 8/49 (16%), Positives = 31/49 (63%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
RL+ + +++ KE ++K+++ ++ K++ K+ +K+ ++ +++ +
Sbjct: 315 RLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHEL 363
Score = 28.5 bits (64), Expect = 6.3
Identities = 10/45 (22%), Positives = 26/45 (57%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
L + + K+ ++E K+ ++K++K +E ++ +K KK+ +
Sbjct: 450 RKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESE 494
Score = 28.5 bits (64), Expect = 6.6
Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 4 EGRLKTKKKKKKKKKKE-EKKKKKKKKKKKEEEKKKKKKKKKKKK------KKKKRLYL 55
E L+ ++K+ KK ++E +K ++ + +K E+ +K+ ++ +KK ++ + YL
Sbjct: 611 EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYL 669
Score = 28.5 bits (64), Expect = 7.3
Identities = 11/42 (26%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
+++ K+ EEK+++ ++ KKK +E +K+ ++ +++ LY
Sbjct: 327 EERIKELEEKEERLEELKKKLKE----LEKRLEELEERHELY 364
Score = 28.5 bits (64), Expect = 7.4
Identities = 13/43 (30%), Positives = 28/43 (65%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
+ K+ +K+ K+ EEK++K +K+ ++ E+ KK+ + K K+
Sbjct: 458 TAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKE 500
Score = 28.1 bits (63), Expect = 7.6
Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKK--KKEEEKKKKKKKKKKKKKKKKR 52
+ K + KE K++ ++ +K K+ E ++ K+K+K+ ++ R
Sbjct: 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLR 207
Score = 28.1 bits (63), Expect = 9.4
Identities = 8/42 (19%), Positives = 23/42 (54%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ K+ K ++ +K K+ E ++ K+K+K+ ++ + +
Sbjct: 168 GEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREI 209
Score = 28.1 bits (63), Expect = 9.6
Identities = 9/48 (18%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 7 LKTKKKKKKK--KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+K + ++ +K K+ E ++ K+K+K+ EE ++ + + + +
Sbjct: 174 IKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELRE 221
>gnl|CDD|217935 pfam04158, Sof1, Sof1-like domain. Sof1 is essential for cell
growth and is a component of the nucleolar rRNA
processing machinery.
Length = 88
Score = 33.0 bits (76), Expect = 0.037
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
KK +K K+E K+ KK+K++ + + K K ++KK
Sbjct: 48 KKAQKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKKH 86
Score = 30.7 bits (70), Expect = 0.20
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK +K K E K+ KK+K++ + K K ++KK
Sbjct: 48 KKAQKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKKH 86
Score = 30.3 bits (69), Expect = 0.31
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK ++ K++ K+ KK+KEE ++K K K +++
Sbjct: 48 KKAQKIKREMKEAKKRKEENRRKHSKPGSVPPKPERK 84
Score = 28.8 bits (65), Expect = 0.96
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K KK +K K++ ++ KK+K++ +++ K K ++KK
Sbjct: 45 KAIKKAQKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKKH 86
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 35.5 bits (82), Expect = 0.037
Identities = 11/51 (21%), Positives = 29/51 (56%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
S+ R + ++ +++ ++K+KK+EE K K++K++ + +K+
Sbjct: 328 ASIATRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKR 378
Score = 29.0 bits (65), Expect = 4.5
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKK 40
++K+KKKEE K K++K++ E EK+ K+
Sbjct: 354 QQKEKKKEESKAKEEKQEDIEFEKRFKE 381
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 35.1 bits (81), Expect = 0.037
Identities = 17/41 (41%), Positives = 32/41 (78%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK 42
SL L+T++K+K+ K+++EKK+ +++KKKK+E K K++
Sbjct: 273 SLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQR 313
Score = 34.0 bits (78), Expect = 0.093
Identities = 14/36 (38%), Positives = 27/36 (75%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K++K++++KK ++ K EEE K +KK+++ + KKK
Sbjct: 13 KREKKKREKKSIRQSKLEEELNKLEKKEEEAECKKK 48
Score = 33.6 bits (77), Expect = 0.12
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 8 KTKKKKK--KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIP 60
TKK + K + E K+K+ K++++K+E +++KKKKK+ K K+R
Sbjct: 267 STKKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQRFEANDPAQ 321
Score = 32.8 bits (75), Expect = 0.21
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ KK + K ++K+K+ K+++E+K+ +++KKKKK+ K
Sbjct: 266 PSTKKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKV 310
Score = 32.8 bits (75), Expect = 0.25
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSH 63
KK + K + ++K+K+ K+++EKK+ +++KKKKK+ ++
Sbjct: 269 KKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQRFEANDPA 320
Score = 32.1 bits (73), Expect = 0.40
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLP 56
K +KKK++KK + K +++ K +++E++ + KKK K + LP
Sbjct: 13 KREKKKREKKSIRQSKLEEELNKLEKKEEEAECKKKFKANPVPASVKLP 61
Score = 30.9 bits (70), Expect = 0.95
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 4 EGRLKTKKKKKKKKK-----KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPT 57
E R K+K +K + E++KK +K +++ KK K K K +Y+P
Sbjct: 76 EVREKSKAILLSSQKPFSFYEREEQKKAILPRKLRSSTSEREPKKFKAKPVPKSIYIPL 134
Score = 30.5 bits (69), Expect = 1.1
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 2 SLEGRLKTKKKKKKKKKKE-EKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
+ R K K++KK ++ + E++ K +KK++E E KKK K K LY
Sbjct: 10 QMTKREKKKREKKSIRQSKLEEELNKLEKKEEEAECKKKFKANPVPASVKLPLY 63
Score = 29.7 bits (67), Expect = 2.1
Identities = 12/52 (23%), Positives = 28/52 (53%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
++ + K ++K KK + K + E K+K+ K++++KK+ ++R
Sbjct: 248 ENISAGEENLKPTRRKLPPSTKKWESLVKFLRTERKEKEAKEQQEKKELEQR 299
Score = 28.6 bits (64), Expect = 5.3
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 17/75 (22%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKK-----------------KEEEKKKKKKKKK 44
S R + KK +K + +++ KK K +EEE K+K + +
Sbjct: 93 SFYEREEQKKAILPRKLRSSTSEREPKKFKAKPVPKSIYIPLLKDKMQEEELKRKIRVQM 152
Query: 45 KKKKKKKRLYLPTSI 59
+ ++ + LP +
Sbjct: 153 RAQELLQSSRLPPRM 167
Score = 28.2 bits (63), Expect = 7.1
Identities = 11/61 (18%), Positives = 29/61 (47%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKKAHMVP 72
++ ++++EE ++K K ++ +++++KK R ++ KA VP
Sbjct: 68 EQNEERREEVREKSKAILLSSQKPFSFYEREEQKKAILPRKLRSSTSEREPKKFKAKPVP 127
Query: 73 R 73
+
Sbjct: 128 K 128
Score = 27.8 bits (62), Expect = 7.8
Identities = 9/45 (20%), Positives = 26/45 (57%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K ++K +K + K + E ++K+ K++++KK+ ++++
Sbjct: 256 NLKPTRRKLPPSTKKWESLVKFLRTERKEKEAKEQQEKKELEQRK 300
Score = 27.8 bits (62), Expect = 8.6
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPT 57
RL KKK+ +KK K +KK K K+ K + +K +K +K+ +KK+ PT
Sbjct: 175 RLTKKKKRGQKKSKYKKKTFKPKRAKSIPDFEKLHEKFQKQLAEKKKSKRPT 226
Score = 27.8 bits (62), Expect = 8.9
Identities = 13/64 (20%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKK-----KKEEEKKKKKKKK------KKKKKKKKRLYL 55
++ ++++++ +++ K +K ++EE+KK +K +++ KK K +
Sbjct: 67 MEQNEERREEVREKSKAILLSSQKPFSFYEREEQKKAILPRKLRSSTSEREPKKFKAKPV 126
Query: 56 PTSI 59
P SI
Sbjct: 127 PKSI 130
>gnl|CDD|151665 pfam11223, DUF3020, Protein of unknown function (DUF3020). This
family of fungal proteins is conserved towards the
C-terminus of HMG domains. The function is not known.
Length = 49
Score = 31.8 bits (72), Expect = 0.038
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
+++KKK +E ++ K + KKK KKK K+ K+K Y
Sbjct: 1 NRERKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKDAY 44
Score = 28.3 bits (63), Expect = 0.76
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+++KKK ++ ++ K + +KK KKK K+ K+K
Sbjct: 1 NRERKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKD 42
Score = 27.2 bits (60), Expect = 2.2
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+++KKK ++ ++ K + + ++K KKK K+ K+K
Sbjct: 2 RERKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKDA 43
Score = 26.4 bits (58), Expect = 3.4
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
E + K ++ ++ K + + + KKK KK+ K+ K+K
Sbjct: 3 ERKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKDA 43
Score = 25.6 bits (56), Expect = 5.8
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
R K ++ ++ K+ + + KKK K++ K+ K+K
Sbjct: 4 RKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKDA 43
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 35.4 bits (81), Expect = 0.038
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K+ KK ++K EE+K +KK +K++K KK
Sbjct: 108 KESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKM 146
Score = 35.0 bits (80), Expect = 0.061
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K+ KK + ++K EEEK +KK +K++K KK
Sbjct: 108 KESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMD 147
Score = 31.9 bits (72), Expect = 0.56
Identities = 9/39 (23%), Positives = 23/39 (58%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
++KK ++ ++K +++K E++ +K++K KK
Sbjct: 109 ESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMD 147
Score = 31.6 bits (71), Expect = 0.60
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 12/53 (22%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEE------------EKKKKKKKKKKKKK 48
+KKK + K+ KK + + EE +K+ KK ++ ++K
Sbjct: 68 VSKKKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTRRK 120
Score = 30.0 bits (67), Expect = 1.9
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
K KK ++ +++ +++K E+K +K++K KK
Sbjct: 108 KESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMD 147
Score = 30.0 bits (67), Expect = 2.0
Identities = 10/48 (20%), Positives = 25/48 (52%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
++ + L + KK ++ + + ++++ EKK +K++K KK
Sbjct: 100 VNEDAALDKESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMD 147
Score = 28.9 bits (64), Expect = 5.3
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 10/38 (26%)
Query: 7 LKTKKKKKKK----------KKKEEKKKKKKKKKKKEE 34
KT ++ ++K +K E+K +K++K KK +E
Sbjct: 111 KKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDE 148
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 35.0 bits (81), Expect = 0.038
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 18/66 (27%)
Query: 4 EGRLKTKKKKKKKKKK------EEKKKKKK------------KKKKKEEEKKKKKKKKKK 45
E R K +K KK K+ +EK +KK K+K+ +K+K +
Sbjct: 252 EDREKFGSRKGKKDKEGKSTTNKEKARKKNFMMTLHKKRVRGKQKRSLRDKQKVLRAHIL 311
Query: 46 KKKKKK 51
++KK
Sbjct: 312 RQKKGG 317
Score = 31.5 bits (72), Expect = 0.63
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKK---EEEKKKKK-----KKKKKKKKKKKR 52
E R+ T K+ ++ ++K +K KK K+ K +EK +KK KK+ + K+KR
Sbjct: 241 EERIATAKEGREDREKFGSRKGKKDKEGKSTTNKEKARKKNFMMTLHKKRVRGKQKR 297
Score = 28.5 bits (64), Expect = 4.9
Identities = 8/38 (21%), Positives = 24/38 (63%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
++K + KK ++ ++ ++ EEE ++++ + +K+K
Sbjct: 136 EEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEK 173
Score = 28.1 bits (63), Expect = 7.2
Identities = 7/38 (18%), Positives = 25/38 (65%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
++K + K+ K+ ++ +++EE+ ++++ + +K+K
Sbjct: 136 EEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEK 173
Score = 27.7 bits (62), Expect = 8.9
Identities = 8/38 (21%), Positives = 24/38 (63%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
++K + KK +E ++ ++ +EE ++++ + +K+K
Sbjct: 136 EEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEK 173
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 34.6 bits (80), Expect = 0.040
Identities = 7/39 (17%), Positives = 25/39 (64%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
+ ++EE++K+ ++++++ K + ++ + K+K K +
Sbjct: 121 QLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQ 159
Score = 33.8 bits (78), Expect = 0.077
Identities = 7/41 (17%), Positives = 29/41 (70%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ ++++++K++E+++++ + K ++ + K+K K+ +K+
Sbjct: 121 QLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKE 161
Score = 33.1 bits (76), Expect = 0.12
Identities = 10/44 (22%), Positives = 29/44 (65%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
L+ ++++++K+ EE++++ + K E+ + K+K K+ +K+
Sbjct: 118 FLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKE 161
Score = 31.5 bits (72), Expect = 0.45
Identities = 7/37 (18%), Positives = 25/37 (67%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ +++EE+K+ ++++++ K + ++ + K+K K+
Sbjct: 121 QLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKE 157
Score = 30.0 bits (68), Expect = 1.5
Identities = 10/52 (19%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK-KKKKRL 53
LE + +++K+ ++++E + K + ++ K+K K+ +K++ + + R
Sbjct: 119 LEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHRA 170
Score = 28.8 bits (65), Expect = 3.3
Identities = 7/44 (15%), Positives = 27/44 (61%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+K+ + ++ E ++++K+ ++++E + K + ++ + K+K
Sbjct: 112 VRKQLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKA 155
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion
and trafficking].
Length = 150
Score = 33.9 bits (78), Expect = 0.040
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKK-------KKKKKKKKKKKRLY 54
T+ K+ +E+KK +K K+K E+++ K + K KK+L+
Sbjct: 47 TELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENNTVKATKKQLF 99
Score = 33.9 bits (78), Expect = 0.041
Identities = 9/45 (20%), Positives = 23/45 (51%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K + +EE + K+ +E++K +K K+K ++++ +
Sbjct: 33 KKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELK 77
Score = 33.5 bits (77), Expect = 0.062
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKK----EEEKKKKKKKKKKKK 47
L+ L T +++KK ++ K+K ++++ K E + K KK+
Sbjct: 49 LDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENNTVKATKKQ 97
Score = 32.7 bits (75), Expect = 0.10
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
R + K + +E+ + K+ EE+KK +K K+K ++++
Sbjct: 30 RYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEE 75
Score = 30.4 bits (69), Expect = 0.73
Identities = 7/45 (15%), Positives = 25/45 (55%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
++ +++ + +K+ +++KK +K K+K ++++ K +
Sbjct: 35 DIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQ 79
Score = 28.1 bits (63), Expect = 3.7
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKE-----EEKKKKKKKKKKKKKK 49
K +++KK +K K+K ++++ E + K KK+
Sbjct: 51 KELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENNTVKATKKQ 97
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 33.2 bits (76), Expect = 0.044
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ K K K+ K +K + E +K K KK KK KK
Sbjct: 22 EDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKK 65
Score = 32.4 bits (74), Expect = 0.074
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K + K K K+ + KK + + +K K KK KK
Sbjct: 20 KKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKD 62
Score = 32.0 bits (73), Expect = 0.093
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K K K+ + KK + E +K K KK KK K
Sbjct: 21 KEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCK 64
Score = 31.6 bits (72), Expect = 0.12
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K+ K KK + + EK K KK KK KK K
Sbjct: 28 KPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKKGCK 68
Score = 30.9 bits (70), Expect = 0.28
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK+ K K +E K KK + + +K K KK KK
Sbjct: 20 KKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKK 61
Score = 30.5 bits (69), Expect = 0.33
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K K K+ K KK + + E+ K KK KK KK K
Sbjct: 26 KCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKKGCK 68
Score = 30.1 bits (68), Expect = 0.47
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ + K K K+ K ++ + E +K K KK KK KK
Sbjct: 17 KWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKK 65
Score = 29.7 bits (67), Expect = 0.60
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK+ K K ++ K KK + + +K K KK K
Sbjct: 19 DKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDK 60
Score = 29.3 bits (66), Expect = 0.73
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK K K E K+K K KKE++ K K K+ K KK
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAP 40
Score = 28.2 bits (63), Expect = 2.5
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
KK K K E K+K K KK+++ K K K+ K KK
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAP 40
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 35.2 bits (81), Expect = 0.046
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
L K KK K KKK K+ KKK+ K+ K++E++ + + + K
Sbjct: 138 KILGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKS 183
Score = 34.8 bits (80), Expect = 0.054
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
G KK K KKK ++ KKK+ K+ ++++++ + + + K
Sbjct: 141 GIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKS 183
Score = 34.8 bits (80), Expect = 0.058
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
L+ L + K KK K K++ KK KKK+ K+ +K +++ + + + K
Sbjct: 135 GLDKILGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKS 183
Score = 34.0 bits (78), Expect = 0.12
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K KK K ++K KK KKK+ KE K +++ + + + K
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSE 184
Score = 29.4 bits (66), Expect = 3.1
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEE---------EKKKKKKKKKKKKK 48
GR + ++K + K+ +KKK KK E KKK K+KK K
Sbjct: 361 KAGRAAEPTGSRTQQKGDRPKRGEKKKPKKPSVDKPLHPSWEAKKKAKEKKANAK 415
Score = 27.9 bits (62), Expect = 8.0
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K KK+ EK++K+++ ++ E E ++ K++ K +
Sbjct: 325 SGAKHVKKEREKEQKEREGRQSEWEARQAKREGGDAKAGRAA 366
Score = 27.9 bits (62), Expect = 9.9
Identities = 8/44 (18%), Positives = 24/44 (54%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K KK++E+++K+++ ++ + E ++ K++ K +
Sbjct: 325 SGAKHVKKEREKEQKEREGRQSEWEARQAKREGGDAKAGRAAEP 368
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 34.4 bits (79), Expect = 0.047
Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 14/65 (21%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKK--------------KKKKKKKKKK 48
LE K K + K + K +K + K KK++KKK KK
Sbjct: 16 LESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKK 75
Query: 49 KKKRL 53
KK L
Sbjct: 76 KKVPL 80
Score = 33.2 bits (76), Expect = 0.14
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
+ ++ ++ K +K K K + ++ KK ++KK++KKK KKKK
Sbjct: 31 EIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKK 77
Score = 31.7 bits (72), Expect = 0.36
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
+ + + +K K K K + K + K +K K K
Sbjct: 10 KRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIK 51
Score = 31.7 bits (72), Expect = 0.40
Identities = 9/61 (14%), Positives = 24/61 (39%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFK 66
++ + +K K K++ + K +++ +K K K + ++ L + K
Sbjct: 13 VRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKK 72
Query: 67 K 67
Sbjct: 73 P 73
Score = 30.1 bits (68), Expect = 1.2
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K+ + E +K K K K E K + K +K K
Sbjct: 10 KRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFK 47
Score = 29.4 bits (66), Expect = 2.3
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K+ + + EK K K K E K + K +K K
Sbjct: 10 KRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLL 49
Score = 28.6 bits (64), Expect = 4.3
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K+ + E +K K K K E K + K +K K L
Sbjct: 10 KRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLL 49
Score = 28.6 bits (64), Expect = 4.4
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
R K + + +K + K K + + + K +K K K
Sbjct: 8 RAKRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIK 51
Score = 27.8 bits (62), Expect = 6.7
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 29 KKKKEEEKKKKKKKKKKKKKKK 50
K K KK KK KKKKKKK+
Sbjct: 196 KGDKSSAKKDKKSKKKKKKKRS 217
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 34.4 bits (79), Expect = 0.050
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 17 KKKEEKKKKKKKKKKKEE------EKKKKKKKKKKKKKKKKRLYL 55
++ E KK + KK+ E+ E K+KKKKK KKKK K L L
Sbjct: 64 RQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPKSLLL 108
Score = 31.7 bits (72), Expect = 0.42
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 12 KKKKKKKKEEKKKKKKKK--KKKEEEKKKKKKKKKKKKKKK 50
++ ++KK + KK+ + +E K+KKKKK KKKK K
Sbjct: 64 RQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 29.0 bits (65), Expect = 2.7
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
R +KK + KKE + ++ K+++KKK KKKK K
Sbjct: 64 RQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
>gnl|CDD|220357 pfam09716, ETRAMP, Malarial early transcribed membrane protein
(ETRAMP). These sequences represent a family of
proteins from the malaria parasite Plasmodium
falciparum, several of which have been shown to be
expressed specifically in the ring stage as well as the
rodent parasite Plasmodium yoelii. A homologue from
Plasmodium chabaudi was localized to the
parasitophorous vacuole membrane. Members have an
initial hydrophobic, Phe/Tyr-rich, stretch long enough
to span the membrane, a highly charged region rich in
Lys, a second putative transmembrane region and a
second highly charged, low complexity sequence region.
Some members have up to 100 residues of additional
C-terminal sequence. These genes have been shown to be
found in the sub-telomeric regions of both Plasmodium
falciparum and P. yoelii chromosomes.
Length = 82
Score = 32.2 bits (74), Expect = 0.050
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKKKKKK 45
KKKK KK KK +++ +KKKK KKK
Sbjct: 28 VAKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 31.1 bits (71), Expect = 0.16
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 21 EKKKKKKKKKKKEEEKKKKKKKKKKK 46
KKKK KK KK ++ +KKKK KKK
Sbjct: 28 VAKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 30.7 bits (70), Expect = 0.20
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKK 32
KKK KK KK ++ +KKKK KKK
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 28.8 bits (65), Expect = 1.0
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKK 31
++ K KK KK KK ++ +KKKK KKK
Sbjct: 23 LNNNVVAKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 28.4 bits (64), Expect = 1.2
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 23 KKKKKKKKKKEEEKKKKKKKKKKKK 47
KKKK KK K+ + +KKKK KKK
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKK 53
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 34.9 bits (80), Expect = 0.053
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K + ++ + EE +++K +++ +K KK KK K KK
Sbjct: 311 KPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLD 352
Score = 34.6 bits (79), Expect = 0.084
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
E +L + K + +++E ++ +++K +EE KK KK KK K KK
Sbjct: 301 EDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKN 349
Score = 32.2 bits (73), Expect = 0.40
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
++ + ++ E++K +++ ++ KK KK K KK K
Sbjct: 315 EQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKD 354
Score = 32.2 bits (73), Expect = 0.44
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K + ++ E+ ++ +++K ++E KK KK KK K KK L
Sbjct: 311 KPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGL 351
Score = 32.2 bits (73), Expect = 0.45
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
++ + ++ EE+K +++ K+ +K KK K KK K
Sbjct: 315 EQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKD 354
Score = 31.1 bits (70), Expect = 0.97
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
++ + ++ +EEK +++ KK ++ KK K KK K
Sbjct: 315 EQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKD 354
Score = 30.7 bits (69), Expect = 1.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK 43
+++ +++K ++E KK KK KK + KK K
Sbjct: 319 DSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKD 354
Score = 29.9 bits (67), Expect = 1.9
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKK----------KKKKEEEKKKKKKKKKKKKKKKKRL 53
E +K + K+ K K + K ++ +++K KKKKKK K KK+L
Sbjct: 196 EDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKKL 255
Query: 54 Y 54
Sbjct: 256 D 256
Score = 29.5 bits (66), Expect = 2.6
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ K + K E ++ + ++ +EE+ +++ KK KK KK
Sbjct: 300 REDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLK 345
Score = 29.5 bits (66), Expect = 3.1
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E R + K + E+ + ++ ++++ E++ KK KK KK K
Sbjct: 297 PEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLK 345
Score = 29.2 bits (65), Expect = 3.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
+++K KKKKKK + KKK KK K+
Sbjct: 236 GDEEKSKKKKKKLAKNKKKLDDDKKGKR 263
Score = 29.2 bits (65), Expect = 3.5
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
E+ ++K KKKKK+ K KKK KK K+
Sbjct: 234 EDGDEEKSKKKKKKLAKNKKKLDDDKKGKR 263
Score = 28.8 bits (64), Expect = 5.1
Identities = 9/45 (20%), Positives = 23/45 (51%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLP 56
++ K + K + ++ + EE +++K +++ KK K+L
Sbjct: 300 REDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKL 344
Score = 28.4 bits (63), Expect = 6.8
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 10/48 (20%)
Query: 14 KKKKKKEEK----------KKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
++ K E ++ +++K EEE KK KK KK K K
Sbjct: 300 REDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGK 347
Score = 28.0 bits (62), Expect = 7.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKK 45
EEK KKKKKK K ++K KK K+
Sbjct: 237 DEEKSKKKKKKLAKNKKKLDDDKKGKR 263
Score = 28.0 bits (62), Expect = 8.2
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKK 41
++K ++KKKK K KKK ++ KK K+
Sbjct: 237 DEEKSKKKKKKLAKNKKKLDDDKKGKR 263
>gnl|CDD|225324 COG2604, COG2604, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 594
Score = 35.0 bits (81), Expect = 0.054
Identities = 11/44 (25%), Positives = 15/44 (34%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+K K K K K +E+ K +K KK K
Sbjct: 449 EKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKEF 492
Score = 32.7 bits (75), Expect = 0.33
Identities = 11/44 (25%), Positives = 15/44 (34%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
E L K K K ++K K +K KK K+
Sbjct: 448 CEKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKE 491
Score = 32.3 bits (74), Expect = 0.33
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKKAHMVPR 73
+ KE +K K K K K ++K K L I ++ F K
Sbjct: 440 IELPFKEVCEKLLDKDKNKPFIKLILLSNNSQEKAVLKLL---QKIKKNNDFIK-EFETD 495
Query: 74 CNAMRQIYE 82
+++I E
Sbjct: 496 ALKLQEILE 504
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 34.2 bits (79), Expect = 0.054
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKK 37
K +K++KK KEEKK K +K+K EEE
Sbjct: 94 FKAQKEEKKAMSKEEKKAIKAEKEKLEEEYG 124
Score = 30.4 bits (69), Expect = 0.94
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
K +KEEKK K++KK + +K+K +++
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEEYG 124
Score = 30.0 bits (68), Expect = 1.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 22 KKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K +K++KK +EEKK K +K+K +++
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEEYG 124
Score = 30.0 bits (68), Expect = 1.5
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 21 EKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ +K++KK KEE+K K +K+K +++
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEEYG 124
Score = 28.1 bits (63), Expect = 5.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 12/52 (23%)
Query: 14 KKKKKKEEKKKKKK------------KKKKKEEEKKKKKKKKKKKKKKKKRL 53
KK KEEK K K +KEE+K K++KK K +K++L
Sbjct: 68 KKVMTKEEKVIIKDFSKCDFTQMFAYFKAQKEEKKAMSKEEKKAIKAEKEKL 119
>gnl|CDD|149515 pfam08492, SRP72, SRP72 RNA-binding domain. This region has been
identified as the binding site of the SRP72 protein to
SRP RNA.
Length = 57
Score = 31.7 bits (72), Expect = 0.055
Identities = 18/30 (60%), Positives = 20/30 (66%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
E KK KK KKK E+KKKK KKK+K K
Sbjct: 1 EAKKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 30.5 bits (69), Expect = 0.15
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 21 EKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
E KK KK KKK ++KKKK KKK+K K
Sbjct: 1 EAKKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 27.8 bits (62), Expect = 1.1
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
+ +K KK KKK E+KKKK KKK+K K
Sbjct: 1 EAKKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 27.8 bits (62), Expect = 1.1
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 24 KKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK KK KK+ ++KKKK KKK+K K
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 34.0 bits (78), Expect = 0.056
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEE 35
KKKK K KK + K KK + KKK E
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 32.5 bits (74), Expect = 0.19
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
++K EKKKK K KK K + KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 31.3 bits (71), Expect = 0.49
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
++K +KKKK K KK + K KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 31.0 bits (70), Expect = 0.66
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEE 35
+KKKK K KK + K KK + KKK E
Sbjct: 89 VEKKKKGKSKKNKLKGKKDEDKKKARE 115
Score = 30.6 bits (69), Expect = 0.75
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKK 39
R K +KKKK + KK K K KK E++KK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 30.6 bits (69), Expect = 0.79
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
++K +KKKK K KK + + KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 29.4 bits (66), Expect = 1.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 25 KKKKKKKKEEEKKKKKKKKKKKKK 48
KKKK K K+ + K KK + KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 29.4 bits (66), Expect = 2.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKE 33
K KK K KK K + KK + KKK ++
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 29.0 bits (65), Expect = 2.6
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 29 KKKKEEEKKKKKKKKKKKKKKKKR 52
KKKK + KK K K KK + KKK R
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 29.0 bits (65), Expect = 2.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
++K E+KKK K KK K + +K + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 35.2 bits (81), Expect = 0.058
Identities = 14/49 (28%), Positives = 32/49 (65%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+E +K+ ++K + EK K+++K KKE E++ ++ K++++ KK +
Sbjct: 517 IEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLE 565
Score = 32.9 bits (75), Expect = 0.31
Identities = 12/48 (25%), Positives = 31/48 (64%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
L +K+ ++K + +K K+++K K+E +++ ++ K++++ KK L
Sbjct: 520 LSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELE 567
Score = 31.7 bits (72), Expect = 0.58
Identities = 16/47 (34%), Positives = 32/47 (68%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
+LE L+ K + +K KE++K KK+ +++ EE K++++ KK + +K
Sbjct: 522 ALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEK 568
Score = 29.4 bits (66), Expect = 3.3
Identities = 11/48 (22%), Positives = 32/48 (66%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
K +K+ ++K E +K K+++K +++ +++ ++ K++++ K+L L
Sbjct: 519 KLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLEL 566
Score = 29.4 bits (66), Expect = 3.6
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
LK +++ KK + ++E ++ K KK+ E ++ K+KK K K+
Sbjct: 555 LKERERNKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEI 599
Score = 29.0 bits (65), Expect = 4.4
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ K++++ KK + EK+ ++ K K+E + ++ K+KK K K
Sbjct: 552 MEELKERERNKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAK 597
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 34.8 bits (81), Expect = 0.059
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
LE LK K + E+K+KKK+KKK K+++ K + K K K+ R L
Sbjct: 381 LEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATRQDL 433
Score = 30.2 bits (69), Expect = 1.9
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
L + ++ +++ K+ K + +++E+KK+KKK KKKK K +
Sbjct: 374 LLQRVEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRG 419
>gnl|CDD|217970 pfam04220, YihI, Der GTPase activator (YihI). YihI activates the
GTPase activity of Der, a 50S ribosomal subunit
stability factor. The stimulation is specific to Der as
YihI does not stimulate the GTPase activity of Era or
ObgE. The interaction of YihI with Der requires only
the C-terminal 78 amino acids of YihI. A yihI deletion
mutant is viable and shows a shorter lag period, but
the same post-lag growth rate as a wild-type strain.
yihI is expressed during the lag period. Overexpression
of yihI inhibits cell growth and biogenesis of the 50S
ribosomal subunit. YihI is an unusual, highly
hydrophilic protein with an uneven distribution of
charged residues, resulting in an N-terminal region
with high pI and a C-terminal region with low pI.
Length = 169
Score = 33.9 bits (78), Expect = 0.062
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 21/71 (29%)
Query: 4 EGRLKTKKKKKKKKK-------KEEKKKKKKKKKKK--------------EEEKKKKKKK 42
E R + +KKK+K K + E +K+K +KK E + K +K+
Sbjct: 25 EARERKRKKKRKGLKSGSRHNEESESQKQKGAAQKKDPRIGSKKPVPLIVEFKVKPEKQA 84
Query: 43 KKKKKKKKKRL 53
KKKK KK +L
Sbjct: 85 PKKKKVKKPKL 95
Score = 31.2 bits (71), Expect = 0.43
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+K K + K KKK + E +++ +++K+KKK+K K
Sbjct: 1 RKSGKNGPKLAPKGKKKTRYELDQEARERKRKKKRKGLK 39
Score = 29.6 bits (67), Expect = 1.4
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 12/64 (18%)
Query: 10 KKKKKKKKK---------KEEKKKKKKKKKK---KEEEKKKKKKKKKKKKKKKKRLYLPT 57
K K KKK +E K+KKK+K K + E+ + +K+K +KK R+
Sbjct: 9 KLAPKGKKKTRYELDQEARERKRKKKRKGLKSGSRHNEESESQKQKGAAQKKDPRIGSKK 68
Query: 58 SIPL 61
+PL
Sbjct: 69 PVPL 72
Score = 27.7 bits (62), Expect = 5.8
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 21/89 (23%)
Query: 5 GRLKTKKKKKKKKKK-------EEKKKKKKKKKK---------KEEEKKKKKKKKKKK-- 46
K K KKK E +++K+KKK+K +E E +K+K +KK
Sbjct: 3 SGKNGPKLAPKGKKKTRYELDQEARERKRKKKRKGLKSGSRHNEESESQKQKGAAQKKDP 62
Query: 47 ---KKKKKRLYLPTSIPLSHYFKKAHMVP 72
KK L + + K V
Sbjct: 63 RIGSKKPVPLIVEFKVKPEKQAPKKKKVK 91
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 35.0 bits (81), Expect = 0.064
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 18/91 (19%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHY---FKKAHMV 71
++KKK +K +K+ + + KK+K+ + +K++ L+ H + MV
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRHVLHY-------HNPSVEELKEMV 136
Query: 72 PRCNAMRQIYEHGPLVAIFSVYADFLQYKSG 102
N +I+E P + DFL + G
Sbjct: 137 ENVN--SRIWEKTPE------HHDFLHVRLG 159
Score = 31.1 bits (71), Expect = 1.1
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
S + KKK KK +K + + KK++E + +K++
Sbjct: 77 FSTTTYFREKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 34.7 bits (80), Expect = 0.071
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
SLE ++ K+ EE ++K ++ ++ E +++ KK+ KK KK
Sbjct: 451 SLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKK 499
Score = 30.8 bits (70), Expect = 1.1
Identities = 11/54 (20%), Positives = 25/54 (46%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
+ +K ++ +E+ ++ ++ + +EE KK+ KK KK + L
Sbjct: 455 FKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLL 508
>gnl|CDD|153289 cd07605, I-BAR_IMD, Inverse (I)-BAR, also known as the IRSp53/MIM
homology Domain (IMD), a dimerization module that binds
and bends membranes. Inverse (I)-BAR (or IMD) is a
member of the Bin/Amphiphysin/Rvs (BAR) domain family.
It is a dimerization and lipid-binding module that bends
membranes and induces membrane protrusions in the
opposite direction compared to classical BAR and F-BAR
domains, which produce membrane invaginations. IMD
domains are found in Insulin Receptor tyrosine kinase
Substrate p53 (IRSp53), Missing in Metastasis (MIM), and
Brain-specific Angiogenesis Inhibitor 1-Associated
Protein 2-like (BAIAP2L) proteins. These are
multi-domain proteins that act as scaffolding proteins
and transducers of a variety of signaling pathways that
link membrane dynamics and the underlying actin
cytoskeleton. Most members contain an N-terminal IMD, an
SH3 domain, and a WASP homology 2 (WH2) actin-binding
motif at the C-terminus, exccept for MIM which does not
carry an SH3 domain. Some members contain additional
domains and motifs. The IMD domain binds and bundles
actin filaments, binds membranes and produces membrane
protrusions, and interacts with the small GTPase Rac.
Length = 223
Score = 33.9 bits (78), Expect = 0.076
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
LE +L+ +K K EK KK+ K+K+E+ K + + KK +KK +K
Sbjct: 99 LEKKLE---LDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKS 145
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 34.5 bits (79), Expect = 0.084
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K+ K EE ++K ++ + E KK ++ KK +
Sbjct: 1170 KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPK 1208
Score = 34.1 bits (78), Expect = 0.14
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+LE L K+ K ++ +K ++ + + KK ++ KK KK
Sbjct: 1160 ALEKELDKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKK 1209
Score = 33.3 bits (76), Expect = 0.24
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K+ K +E ++K ++ + E KK ++ KK K+
Sbjct: 1170 KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKK 1209
Score = 31.8 bits (72), Expect = 0.61
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K ++ ++K + + + KK + KK KK KK
Sbjct: 1174 KAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKA 1214
Score = 31.8 bits (72), Expect = 0.69
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK 41
E R K ++ + + KK ++ KK +K KK
Sbjct: 1177 EAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKA 1214
Score = 31.4 bits (71), Expect = 0.92
Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 19/66 (28%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEE-------------------KKKKKKKKKK 45
G KK ++ K+ KK KK + E K K + KK
Sbjct: 1189 GESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKPKGRAGAKK 1248
Query: 46 KKKKKK 51
K
Sbjct: 1249 KAPAAA 1254
Score = 30.6 bits (69), Expect = 1.5
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K ++ ++K ++ + + KK + KK KK KK
Sbjct: 1173 AKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKA 1214
Score = 29.8 bits (67), Expect = 2.8
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK 42
E + ++ + + KK ++ KK KK KK
Sbjct: 1176 EEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKA 1214
Score = 29.4 bits (66), Expect = 3.1
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K ++ ++K + + + K+ ++ KK KK KK
Sbjct: 1174 KAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKA 1214
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 34.1 bits (79), Expect = 0.091
Identities = 10/46 (21%), Positives = 36/46 (78%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+K+++K++++EE+ K + +++K E +++++ +++++K++K+R
Sbjct: 138 IERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKERE 183
Score = 33.7 bits (78), Expect = 0.11
Identities = 12/46 (26%), Positives = 33/46 (71%), Gaps = 5/46 (10%)
Query: 7 LKTKKKKKKKKKKEEKKK-----KKKKKKKKEEEKKKKKKKKKKKK 47
++ KK+ K ++K+EE++ +++ K EEE++++K+K+++++
Sbjct: 26 IEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERRE 71
Score = 33.7 bits (78), Expect = 0.11
Identities = 12/52 (23%), Positives = 40/52 (76%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
E R++ K+++K+++++EE K + +++K E E++++ +++++K++K++ +
Sbjct: 133 FNEERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREV 184
Score = 33.0 bits (76), Expect = 0.19
Identities = 10/49 (20%), Positives = 35/49 (71%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+E R K ++++ +++ +E ++ + ++ +EE++ + ++K++K+KK ++
Sbjct: 80 IEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLRE 128
Score = 33.0 bits (76), Expect = 0.22
Identities = 12/65 (18%), Positives = 39/65 (60%), Gaps = 16/65 (24%)
Query: 4 EGRLKTKKKKKKKKK--------KEEKKKKKKKKKKKEEEK--------KKKKKKKKKKK 47
E + ++K++K+KK EE+ ++K+++K++E E+ ++K +++++++
Sbjct: 111 EDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREEERE 170
Query: 48 KKKKR 52
+++
Sbjct: 171 AERRE 175
Score = 32.6 bits (75), Expect = 0.29
Identities = 11/53 (20%), Positives = 38/53 (71%), Gaps = 5/53 (9%)
Query: 6 RLKTKKKKKKKKKKEEKKKK-----KKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ ++K+++K+++ E++ K ++K +++EE + +++++K++K+++ RL
Sbjct: 135 EERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARL 187
Score = 31.4 bits (72), Expect = 0.71
Identities = 13/42 (30%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKK--KKKKKKKKKKRL 53
KK+ K EEK+++++ + EEE+ K +++++K+K++R
Sbjct: 29 KKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERR 70
Score = 30.6 bits (70), Expect = 1.0
Identities = 7/43 (16%), Positives = 31/43 (72%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+++++ +++ +E+++ + ++ +EE + + ++K++K+KK +
Sbjct: 86 RRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLRE 128
Score = 30.3 bits (69), Expect = 1.3
Identities = 10/48 (20%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 10 KKKKKKKKKKEEKKKKKK--KKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
K+++ ++++ EE+ ++++ +K+ ++EE +++ +K++ K+ + R L
Sbjct: 246 KEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEHRREL 293
Score = 30.3 bits (69), Expect = 1.3
Identities = 9/38 (23%), Positives = 30/38 (78%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ + +EK++K+KK +++ +E +++ ++K+++K+++R
Sbjct: 113 EAEAQEKREKQKKLREEIDEFNEERIERKEEEKERERE 150
Score = 30.3 bits (69), Expect = 1.3
Identities = 9/48 (18%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Query: 11 KKKKKKKKKEEKKKKKKKKK---KKEEEKKKKKKKKKKKKKKKKRLYL 55
++K+++++ EE+ +++++ ++ +E+ + + ++K++K+KK R +
Sbjct: 83 REKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEI 130
Score = 29.9 bits (68), Expect = 1.9
Identities = 6/39 (15%), Positives = 29/39 (74%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
++K ++++E + +++++K++KE E + + ++++ + ++
Sbjct: 160 REKAEREEEREAERRERKEEKEREVARLRAQQEEAEDER 198
Score = 29.9 bits (68), Expect = 2.0
Identities = 12/63 (19%), Positives = 38/63 (60%), Gaps = 20/63 (31%)
Query: 10 KKKKKKKKKKE-----EKKKKKKKKKKKEE---------------EKKKKKKKKKKKKKK 49
K++K+KK ++E E++ ++K+++K+ E E++++++ +++++K+
Sbjct: 119 KREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERKE 178
Query: 50 KKR 52
+K
Sbjct: 179 EKE 181
Score = 29.5 bits (67), Expect = 2.4
Identities = 7/49 (14%), Positives = 32/49 (65%), Gaps = 5/49 (10%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKE-----EEKKKKKKKKKKKKKKKKRL 53
K +++++E K+K+++++ + EE++K+++++ +++ +++
Sbjct: 52 LKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQ 100
Score = 29.5 bits (67), Expect = 2.7
Identities = 10/56 (17%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 3 LEGRLKTKKKKKKKKKKEE-----KKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
LE K++ K+ + + E ++K++++ ++EEE ++ ++ ++++ +++ R+
Sbjct: 274 LEQENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEELEEGERLREEEAERQARI 329
Score = 28.3 bits (64), Expect = 5.8
Identities = 5/39 (12%), Positives = 31/39 (79%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
++K ++++++E +++++K++K++E + + ++++ + ++
Sbjct: 160 REKAEREEEREAERRERKEEKEREVARLRAQQEEAEDER 198
Score = 28.0 bits (63), Expect = 7.3
Identities = 13/70 (18%), Positives = 39/70 (55%), Gaps = 23/70 (32%)
Query: 6 RLKTKKKKKKKKKKEEKKKKK------------KKKKKKE-----------EEKKKKKKK 42
R K +++++++ ++ E+K++K + + ++E EE ++K+++
Sbjct: 160 REKAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQ 219
Query: 43 KKKKKKKKKR 52
K+K++ +K+R
Sbjct: 220 KEKEEAEKRR 229
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 33.1 bits (76), Expect = 0.096
Identities = 11/47 (23%), Positives = 15/47 (31%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
EG LK + K K + + E KKKK +
Sbjct: 90 EGTLKVAEPKPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAA 136
>gnl|CDD|220121 pfam09135, Alb1, Alb1. Alb1 is a nuclear shuttling factor involved
in ribosome biogenesis.
Length = 112
Score = 32.5 bits (74), Expect = 0.096
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEE--------EKKKKKKKKKKKKKKKKRL 53
S + KK++KKK K+ +K++K++KK E KK+ K + K KK++
Sbjct: 41 SKNEGVSKKKQRKKKPKRLTRKQRKRQKKGLERAEIVTDTLSKKRAKSIGRAKYVKKRKA 100
Score = 27.5 bits (61), Expect = 4.3
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
SL + K+ +K+ K + KKK+ +KK K+ +K++K++KK L
Sbjct: 20 SLTSLPRAKRTDRKRPGILAASKNEGVSKKKQRKKKPKRLTRKQRKRQKKGL 71
Score = 27.1 bits (60), Expect = 5.6
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
S++ + + K+ + K+ K E KKK++KKK K+ +K
Sbjct: 13 SIDLDKSSLTSLPRAKRTDRKRPGILAASKNEGVSKKKQRKKKPKRLTRK 62
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 33.9 bits (78), Expect = 0.099
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 11/56 (19%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKK-----------EEEKKKKKKKKKKKKKKKKR 52
K +++ K+KK EK KK KKK+K ++ K KKK +K R
Sbjct: 154 KLQERAKEKKDMLEKIKKLKKKRKGGGDEGDLFDFLVDDAAKGGSKKKGRKGGAAR 209
Score = 32.3 bits (74), Expect = 0.26
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Query: 8 KTKKKKKKKKK-----------KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K KK KKK+K ++ K KKK ++ + K K+K K K
Sbjct: 168 KIKKLKKKRKGGGDEGDLFDFLVDDAAKGGSKKKGRKGGAARGKPNAKRKAKDAK 222
Score = 31.9 bits (73), Expect = 0.34
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
Query: 5 GRLKTKKKKKK-----KKKKEEKKKKKK----KKKKKEEEKKKKKKKKKKKKKKKK 51
+L + KK +K++E KK K+ K +++ +EKK +K KK KKK+K
Sbjct: 122 KKLLAEAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKKRK 177
Score = 31.9 bits (73), Expect = 0.35
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 11/58 (18%)
Query: 6 RLKTK--KKKKKKKKKEEKKKK---KKKKKKKEEEKKKKKKKKKK------KKKKKKR 52
+++ K + KK EE +K+ KK K+ + EK +++ K+KK KK KKKR
Sbjct: 119 KVRKKLLAEAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKKR 176
>gnl|CDD|236698 PRK10475, PRK10475, 23S rRNA pseudouridine synthase F; Provisional.
Length = 290
Score = 33.9 bits (78), Expect = 0.100
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK----KKKKKKR 52
K K K K K K+ K +K E+ + K+ +KKK R
Sbjct: 244 KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290
Score = 32.4 bits (74), Expect = 0.29
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 8 KTKKKKKKK----KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K K K K K K+ K +K +K + K+ +KKK
Sbjct: 244 KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
Score = 27.8 bits (62), Expect = 9.8
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 20 EEKKKKKKKKK-----KKEEEKKKKKKKKKKKKKKKKR 52
E K K K K K + + +K +K + KR
Sbjct: 242 EAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKR 279
>gnl|CDD|146486 pfam03879, Cgr1, Cgr1 family. Members of this family are
coiled-coil proteins that are involved in pre-rRNA
processing.
Length = 105
Score = 32.0 bits (73), Expect = 0.100
Identities = 10/42 (23%), Positives = 28/42 (66%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K+ +K+ +++ K ++K+ K +KE E++++ + K+++ K
Sbjct: 31 EKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAK 72
Score = 27.8 bits (62), Expect = 3.3
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
+K ++ K++K++ EK K KK E K+++K+ K K
Sbjct: 64 AIKERRAAKEEKERYEKMAAKMHAKKVERLKRREKRNKLLK 104
>gnl|CDD|204122 pfam09072, TMA7, Translation machinery associated TMA7. TMA7
plays a role in protein translation. Deletions of the
TMA7 gene results in altered protein synthesis rates.
Length = 63
Score = 31.0 bits (70), Expect = 0.10
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
G+ K K KK+KK+ +++ K+K+KEE K K+ K K K
Sbjct: 6 GKKKPLKAPKKQKKELDEEDLAFKQKQKEEAKALKELAAKAKGK 49
Score = 28.3 bits (63), Expect = 0.94
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KKK K KK+KK+ EE+ K+K+K++ K K+
Sbjct: 7 KKKPLKAPKKQKKELDEEDLAFKQKQKEEAKALKE 41
Score = 27.9 bits (62), Expect = 1.4
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K KK+KKE ++ K+K++EE K K+ K K K
Sbjct: 12 KAPKKQKKELDEEDLAFKQKQKEEAKALKELAAKAKGK 49
Score = 26.0 bits (57), Expect = 6.3
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
KK+ K KK+KK+ +EE K+K+K++ K K L
Sbjct: 7 KKKPLKAPKKQKKELDEEDLAFKQKQKEEAKALKEL 42
>gnl|CDD|235219 PRK04098, PRK04098, sec-independent translocase; Provisional.
Length = 158
Score = 32.8 bits (75), Expect = 0.11
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
SLE ++ + + ++ + +E K K K KK K+K
Sbjct: 110 SLEEDTIPNHLNEEVSNETKLTQESSSDESPKEVKLATKNKTKKHDKEK 158
Score = 31.2 bits (71), Expect = 0.35
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
++ E K ++ + +E K K K KK K+K
Sbjct: 114 DTIPNHLNEEVSNETKLTQESSSDESPKEVKLATKNKTKKHDKEK 158
Score = 27.8 bits (62), Expect = 6.4
Identities = 7/45 (15%), Positives = 15/45 (33%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K ++ ++ + K +E + K+ K K K
Sbjct: 106 DYKKSLEEDTIPNHLNEEVSNETKLTQESSSDESPKEVKLATKNK 150
>gnl|CDD|153340 cd07656, F-BAR_srGAP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Proteins. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and the
migration of neurons and leukocytes. Vertebrates contain
three isoforms of srGAPs, all of which are expressed
during embryonic and early development in the nervous
system but with different localization and timing.
srGAPs contain an N-terminal F-BAR domain, a Rho GAP
domain, and a C-terminal SH3 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 241
Score = 33.5 bits (77), Expect = 0.11
Identities = 13/44 (29%), Positives = 30/44 (68%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
S E +LK +K+++K+++ +KK ++ + K+ EK+ +K++ K
Sbjct: 148 KSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAK 191
Score = 31.9 bits (73), Expect = 0.36
Identities = 11/41 (26%), Positives = 29/41 (70%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
+K K+ E++++K+++ +K+ E+ + KK +K+ +K++ Y
Sbjct: 152 RKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKY 192
Score = 30.4 bits (69), Expect = 1.1
Identities = 14/44 (31%), Positives = 31/44 (70%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K+ ++K K+ +K+E+K+++ +KK E + KK +K+ +K++ K
Sbjct: 148 KSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAK 191
>gnl|CDD|188624 cd09904, H3TH_XPG, H3TH domain of Xeroderma pigmentosum
complementation group G (XPG) nuclease, a
structure-specific, divalent-metal-ion dependent, 5'
nuclease. The Xeroderma pigmentosum complementation
group G (XPG) nuclease plays a central role in
nucleotide excision repair (NER) in cleaving DNA bubble
structures or loops. XPG is a member of the
structure-specific, 5' nuclease family that catalyzes
hydrolysis of DNA duplex-containing nucleic acid
structures during DNA replication, repair, and
recombination. Members of this subgroup include the
H3TH (helix-3-turn-helix) domains of XPG and other
similar eukaryotic 5' nucleases. These nucleases
contain a PIN (PilT N terminus) domain with a helical
arch/clamp region/I domain (not included here) and
inserted within the PIN domain is an atypical
helix-hairpin-helix-2 (HhH2)-like region. This atypical
HhH2 region, the H3TH domain, has an extended loop with
at least three turns between the first two helices, and
only three of the four helices appear to be conserved.
Both the H3TH domain and the helical arch/clamp region
are involved in DNA binding. Studies suggest that a
glycine-rich loop in the H3TH domain contacts the
phosphate backbone of the template strand in the
downstream DNA duplex. These nucleases have a
carboxylate rich active site that is involved in
binding essential divalent metal ion cofactors (Mg2+ or
Mn2+) required for nuclease activity. The first metal
binding site is composed entirely of Asp/Glu residues
from the PIN domain, whereas, the second metal binding
site is composed generally of two Asp residues from the
PIN domain and one Asp residue from the H3TH domain.
Together with the helical arch and network of amino
acids interacting with metal binding ions, the H3TH
region defines a positively charged active-site
DNA-binding groove in structure-specific 5' nucleases.
Length = 97
Score = 31.8 bits (73), Expect = 0.12
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 26 KKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIP 60
+ +K E+ K++ K+K K K L LP P
Sbjct: 48 NAQPEKSEDSDNDKQEFKRKHKNYLKNLILPPGFP 82
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases,
insulinase-like [General function prediction only].
Length = 978
Score = 34.2 bits (79), Expect = 0.12
Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK---KKRLYLPTSIPL 61
+K +K+E + +K+ + +E+ +K K KK K++ ++P
Sbjct: 463 EKLEKEERELLQKRSSELTDEDLEKIIKDSKKLKERQDQPDSEEDLATLPT 513
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 33.7 bits (77), Expect = 0.12
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K KK KK + + K K KK KK+ + K + K
Sbjct: 145 KEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKP 189
Score = 32.9 bits (75), Expect = 0.22
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ KK KK + K K K KK KKK + K + K
Sbjct: 145 KEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSK 188
Score = 31.8 bits (72), Expect = 0.47
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ KK KK + + K K KK K++ + K + +
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSK 188
Score = 31.0 bits (70), Expect = 0.92
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K+ KK KK + K K K KK ++K + K R
Sbjct: 143 EAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPR 186
Score = 28.7 bits (64), Expect = 4.1
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+K KK + K + K KK KKK + K + K +
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 27.5 bits (61), Expect = 9.2
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKK 67
+E KK KK + K + K KK KKK + + +P P S K
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 33.1 bits (76), Expect = 0.13
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
K ++ EE + K+++ E +KK+ KKKK
Sbjct: 162 AKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 32.7 bits (75), Expect = 0.14
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K K ++ ++ + KEEE + +KK+ KKKK
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 32.7 bits (75), Expect = 0.15
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
K K ++ +E + K+++ E +KK+ KKKK
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 30.4 bits (69), Expect = 0.90
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K K EE ++ + +E++ + +KK+ KKKK
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 29.2 bits (66), Expect = 2.2
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKK 39
+ +L + ++ + K+++ + +K+E KKKK
Sbjct: 161 DAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 33.5 bits (77), Expect = 0.13
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
KK +K ++K K +K + + +KK KK + K K LY
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALY 376
Score = 33.1 bits (76), Expect = 0.17
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
KK +K +EK K +K K +KK KK + K K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAK 373
Score = 31.2 bits (71), Expect = 0.79
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K +K +++ K +K K + KK KK + K K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAK 373
Score = 30.4 bits (69), Expect = 1.3
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K +K +E+ K +K K +KK KK + K K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAK 373
Score = 29.3 bits (66), Expect = 2.9
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
RL+ KK +K ++K K ++ K ++ +KK KK + K
Sbjct: 325 RLRLNPAAKKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAK 370
Score = 28.1 bits (63), Expect = 6.4
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
L +K K +K + ++ +KK KK K K K K
Sbjct: 340 VLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
>gnl|CDD|222812 PHA00727, PHA00727, hypothetical protein.
Length = 278
Score = 33.3 bits (76), Expect = 0.13
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 8 KTKKK--KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
KT K+ K +K++ E KK++ ++ K E KKKKK KK+K
Sbjct: 38 KTLKRLYKVYEKREFELKKQQFEQLKAELSKKKKKFKKEK 77
Score = 32.5 bits (74), Expect = 0.23
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
K+ K +K+E + KK++ ++ K E KKKKK KK+K
Sbjct: 41 KRLYKVYEKREFELKKQQFEQLKAELSKKKKKFKKEK 77
Score = 31.4 bits (71), Expect = 0.59
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K K+ K EK++ + KK++ E+ K + KKKKK KK+K
Sbjct: 38 KTLKRLYKVYEKREFELKKQQFEQLKAELSKKKKKFKKEK 77
Score = 29.8 bits (67), Expect = 1.8
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
E + + K K+ + +K++ + KK++ E+ K + KKKKK KK+++
Sbjct: 29 EAQKQIADGKTLKRLYKVYEKREFELKKQQFEQLKAELSKKKKKFKKEKV 78
Score = 28.3 bits (63), Expect = 5.4
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 11/60 (18%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKK--KKKKKKEEEKKKKK--------KKKKKKKKKKK 51
SLE LK K ++ +K+ + K K+ K +K+E E KK++ KKKKK KK+K
Sbjct: 19 SLE-ELKQKYEEAQKQIADGKTLKRLYKVYEKREFELKKQQFEQLKAELSKKKKKFKKEK 77
Score = 28.3 bits (63), Expect = 6.0
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK 42
KK++ ++ K E KKKKK KK+K + + K KK
Sbjct: 55 KKQQFEQLKAELSKKKKKFKKEKVDVRVKVVKK 87
>gnl|CDD|240256 PTZ00071, PTZ00071, 40S ribosomal protein S24; Provisional.
Length = 132
Score = 32.3 bits (74), Expect = 0.13
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK 42
KKKK +K ++E K ++KK + KE+ K KKK
Sbjct: 100 KKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
Score = 30.8 bits (70), Expect = 0.42
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
KKKK +K K+ K ++KK + +EK K KKK
Sbjct: 100 KKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
Score = 30.4 bits (69), Expect = 0.50
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+L K + K + + KKKK +K +KE + ++KK + K+K K
Sbjct: 80 NLAALKKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVS 128
Score = 28.5 bits (64), Expect = 2.7
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK 43
RL KKKK +K ++ K ++KK + +E+ K KKK
Sbjct: 95 RLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
Score = 28.1 bits (63), Expect = 3.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKK 37
+ L + K +K +K+ K KK + K+K K +KK
Sbjct: 96 LGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
Score = 28.1 bits (63), Expect = 3.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
KKKK ++ +K+ K ++KK ++K K KKK
Sbjct: 100 KKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 34.0 bits (79), Expect = 0.14
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K++ +K E +K+++ +K KE + KK + +KKK+ K
Sbjct: 168 SKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKN 207
Score = 32.5 bits (75), Expect = 0.36
Identities = 12/56 (21%), Positives = 25/56 (44%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSI 59
+ + +K K+ + KK + +KKK+ + K+ + KK K+ + I
Sbjct: 177 AQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEEITPMKEI 232
Score = 32.1 bits (74), Expect = 0.45
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K++ +K + +K+++ +K K+ E KK + +KKK+ K
Sbjct: 168 SKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNF 208
Score = 31.7 bits (73), Expect = 0.73
Identities = 11/56 (19%), Positives = 32/56 (57%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPL 61
++ + K++ ++ + +K+++ +K +E + KK + +KKK+ + + P P+
Sbjct: 160 KIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPV 215
Score = 31.3 bits (72), Expect = 0.93
Identities = 9/62 (14%), Positives = 29/62 (46%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIP 60
+ + +K+++ +K +E + KK + +++++ K K+ + K++ P
Sbjct: 169 KEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEEITP 228
Query: 61 LS 62
+
Sbjct: 229 MK 230
Score = 27.9 bits (63), Expect = 9.3
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
G LK + K++ EK + +K+++ ++ K+ + KK + +KKK
Sbjct: 157 GILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKK 203
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 33.9 bits (78), Expect = 0.14
Identities = 11/51 (21%), Positives = 32/51 (62%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
LE LK +++K++ ++E ++ + + + KEE +K +++ ++ + K ++
Sbjct: 873 EELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLER 923
Score = 33.5 bits (77), Expect = 0.20
Identities = 8/49 (16%), Positives = 28/49 (57%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
L RL+ + + ++ ++ ++ K+K + KEE ++++ ++ ++ +
Sbjct: 307 LRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAE 355
Score = 31.6 bits (72), Expect = 0.63
Identities = 12/49 (24%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 5 GRLKTKKKKKKKKKK-EEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
G K K++K++ ++K E ++ ++ + EE +K+ +K +++ +K +R
Sbjct: 166 GVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAER 214
Score = 30.8 bits (70), Expect = 1.4
Identities = 9/51 (17%), Positives = 30/51 (58%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
LE +L+ +++ +K ++ ++ K + ++ + K K+ +K+ ++ ++ L
Sbjct: 198 LEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEEL 248
Score = 30.5 bits (69), Expect = 1.8
Identities = 8/58 (13%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK------KKKKKKKKKKRL 53
LEG + +++ ++ + E ++ +++ ++ KE+ + K++ ++ ++ L
Sbjct: 299 ELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAEL 356
Score = 30.5 bits (69), Expect = 1.8
Identities = 10/57 (17%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 6 RLKTKKKKKKKK---------KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ K +K++ ++K + E+ ++ +K+ +K E + +K ++ ++ K + + L
Sbjct: 169 KYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELREL 225
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 31.8 bits (72), Expect = 0.15
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKK 32
T+K KKKKKK ++ KK KK KK
Sbjct: 97 TEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 31.4 bits (71), Expect = 0.25
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKKKKKKK 46
E +K KKKKKK ++ KK KK KK
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 31.0 bits (70), Expect = 0.28
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKE 33
K KKKKKK +K KK KK KK+
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 30.2 bits (68), Expect = 0.64
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 8 KTKKKKKKKKKKEEKKKKKK 27
K KKKK KK KK +K KK
Sbjct: 101 KKKKKKSKKTKKPKKSSKKD 120
Score = 29.5 bits (66), Expect = 1.0
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKK 29
E K KKKKKK KK ++ KK KK
Sbjct: 95 EPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 28.7 bits (64), Expect = 1.9
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 26 KKKKKKKEEEKKKKKKKKKKKK 47
K KKKKK+ +K KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 28.7 bits (64), Expect = 1.9
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEE 34
K KKKKK+ KK KK KK K++
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 28.3 bits (63), Expect = 2.6
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 35 EKKKKKKKKKKKKKKKKR 52
EK KKKKKK KK KK K+
Sbjct: 98 EKPKKKKKKSKKTKKPKK 115
Score = 28.3 bits (63), Expect = 2.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKK 37
K KK++KK KK KK KK +K
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.9 bits (62), Expect = 3.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKK 38
K K++KKK KK KK K+ KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.9 bits (62), Expect = 4.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKK 40
K +KKKKK KK KK ++ KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.9 bits (62), Expect = 4.1
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 33 EEEKKKKKKKKKKKKKKKK 51
E+ KKKKKK KK KK KK
Sbjct: 98 EKPKKKKKKSKKTKKPKKS 116
Score = 27.5 bits (61), Expect = 5.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 32 KEEEKKKKKKKKKKKKKKKKR 52
K ++KKKK KK KK KK K+
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKK 119
Score = 26.8 bits (59), Expect = 8.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKK 39
K ++KKKK KK KK ++ KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|191868 pfam07839, CaM_binding, Plant calmodulin-binding domain. The
sequences featured in this family are found repeated in
a number of plant calmodulin-binding proteins, and are
thought to constitute the calmodulin-binding domains.
Binding of the proteins to calmodulin depends on the
presence of calcium ions. These proteins are thought to
be involved in various processes, such as plant defence
responses and stolonisation or tuberization.
Length = 115
Score = 32.0 bits (73), Expect = 0.15
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
E + + ++ KK+ K E++K K KK K+ K +K +K R
Sbjct: 1 TEEKKEERRSKKEDPKPEKEKPKSWSNLKKVILLKRFVKSLEKVRKFNPR 50
Score = 30.0 bits (68), Expect = 0.64
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTS 58
+ KK+ K +KE+ K KK ++ K +K +K + +LP
Sbjct: 8 RRSKKEDPKPEKEKPKSWSNLKKVILLKRFVKSLEKVRKFNPRGPNFLPLE 58
Score = 26.6 bits (59), Expect = 9.9
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
+ + K +K+K K KK K+ + +K +K +
Sbjct: 7 ERRSKKEDPKPEKEKPKSWSNLKKVILLKRFVKSLEKVRKFNPRGP 52
>gnl|CDD|197876 smart00792, Agouti, Agouti protein. The agouti protein regulates
pigmentation in the mouse hair follicle producing a
black hair with a subapical yellow band. A highly
homologous protein agouti signal protein (ASIP) is
present in humans and is expressed at highest levels in
adipose tissue where it may play a role in energy
homeostasis and possibly human pigmentation.
Length = 124
Score = 32.2 bits (73), Expect = 0.15
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 24 KKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLS--HYFKKAHMVPRCN 75
KK KK +E EKK +KK+KK R + K P C+
Sbjct: 52 KKPKKISAEEAEKKLLQKKEKKALTNVLRPEPRSPRRCVRLRDSCKGPQPPCCD 105
>gnl|CDD|129660 TIGR00569, ccl1, cyclin ccl1. All proteins in this family for
which functions are known are cyclins that are
components of TFIIH, a complex that is involved in
nucleotide excision repair and transcription initiation.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, StanfordUniversity) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 305
Score = 33.3 bits (76), Expect = 0.16
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
+ + KK +E + +K KKK +E ++ K +K++ Y
Sbjct: 249 RELRILVKKYEEPRSEKVAALKKKLDECHSIEENLSSVKIRKRKGY 294
>gnl|CDD|221122 pfam11490, DNA_pol3_alph_N, DNA polymerase III polC-type
N-terminus. This is an N-terminal domain of DNA
polymerase III polC subunit A that is found only in
Firmicutes. DNA polymerase polC-type III enzyme
functions as the 'replicase' in low G + C Gram-positive
bacteria. Purine asymmetry is a characteristic of
organisms with a heterodimeric DNA polymerase III
alpha-subunit constituted by polC which probably plays a
direct role in the maintenance of strand-biased gene
distribution; since, among prokaryotic genomes, the
distribution of genes on the leading and lagging strands
of the replication fork is known to be biased. The
domain is associated with DNA_pol3_alpha pfam07733.
Length = 180
Score = 32.7 bits (75), Expect = 0.16
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 6/54 (11%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEK------KKKKKKKKKKKKKKKR 52
G+LK + + + EE+ ++ +++K++EE K + KKK+ +KKKK+K
Sbjct: 127 GKLKIDVEVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEKE 180
>gnl|CDD|215565 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
Length = 803
Score = 33.6 bits (77), Expect = 0.16
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K KKKK K K + +EE KK KK +KK + K
Sbjct: 418 KGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDK 459
Score = 33.3 bits (76), Expect = 0.22
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ K KKKK K K + ++E+ KK KK +KK +
Sbjct: 416 SDKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGR 457
Score = 30.6 bits (69), Expect = 1.5
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K KKKK K + + +E+ KK KK +KK + K
Sbjct: 415 NSDKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDKSS 461
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved
region. Members of this family have very varied
localisations within the eukaryotic cell. pinin is
known to localise at the desmosomes and is implicated
in anchoring intermediate filaments to the desmosomal
plaque. SDK2/3 is a dynamically localised nuclear
protein thought to be involved in modulation of
alternative pre-mRNA splicing. memA is a tumour marker
preferentially expressed in human melanoma cell lines.
A common feature of the members of this family is that
they may all participate in regulating protein-protein
interactions.
Length = 131
Score = 32.1 bits (73), Expect = 0.17
Identities = 10/37 (27%), Positives = 26/37 (70%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K +EE + K+K++ E E+K ++++K+++++ +K
Sbjct: 22 KFSQEESRLTSKEKRRAEIEQKLEEQEKQEREELRKE 58
Score = 30.1 bits (68), Expect = 0.61
Identities = 12/46 (26%), Positives = 34/46 (73%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
+ K+K++ E ++K ++++K+E E+ +K+K++ +++++K+L L
Sbjct: 28 SRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLEL 73
Score = 29.8 bits (67), Expect = 0.99
Identities = 18/75 (24%), Positives = 47/75 (62%), Gaps = 12/75 (16%)
Query: 4 EGRLKTKKKKKK--KKKKEEKKKKKKKKKKKE-----EEKKKKKKKKKKKKKKKKRLYL- 55
E RL +K+K++ ++K EE++K+++++ +KE EE+++K+ + +K ++K + L
Sbjct: 27 ESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDEKLQ 86
Query: 56 ----PTSIPLSHYFK 66
++ L+++ +
Sbjct: 87 ETWHEHNLALANFIR 101
>gnl|CDD|234465 TIGR04092, LTA_DltD, D-alanyl-lipoteichoic acid biosynthesis
protein DltD. Members of this protein family are DltD,
part of the DltABCD system widely distributed in the
Firmicutes for D-alanylation of lipoteichoic acids. The
most common form of LTA, as in Staphylococcus aureus,
has a backbone of polyglycerolphosphate.
Length = 383
Score = 33.3 bits (77), Expect = 0.17
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKK---KEEEKKKKKKKKKKKKKKKKRLYLPTS 58
LE LK KK K +K + + KE++ + K K KKK KK LP +
Sbjct: 176 ILENLLKKLYANGKKLSKFDKVYLEPYYRNLLEKEDDLFSRFKLKYKKKIKKAAKKLPET 235
Query: 59 IPLSHYFKKA 68
KKA
Sbjct: 236 YDWEELDKKA 245
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This
is a family of proteins conserved in fungi. The
function is not known.
Length = 436
Score = 33.2 bits (76), Expect = 0.17
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK K+ + + KK K E ++K K +K
Sbjct: 45 EKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSA 90
Score = 33.2 bits (76), Expect = 0.20
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K KK K+ + + KK K E ++K K +K +
Sbjct: 48 KPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAE 91
Score = 30.9 bits (70), Expect = 1.1
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKK-----EEEKKKKKKKKKKKKKKKKR 52
L +K KK KK + K + + +E ++ +K K KK K+ R
Sbjct: 8 LPDEKAPTKKPKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASR 58
>gnl|CDD|222649 pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family
includes the E. faecalis PcfJ protein, which is
functionally uncharacterized. It is found in bacteria
and viruses, and is typically between 159 and 170 amino
acids in length. There is a conserved HCV sequence
motif.
Length = 169
Score = 32.3 bits (74), Expect = 0.17
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
K + KKE++K +K +K+ E EK ++ K K
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 31.1 bits (71), Expect = 0.47
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
K + K+EK+K +K +K+ E +K ++ K K
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 29.2 bits (66), Expect = 1.8
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ K K + K + KK+K+K E+ +K+ + +K ++ K +
Sbjct: 22 VCPKNLKAAHDRAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSKF 68
Score = 28.4 bits (64), Expect = 3.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKK 40
R K + KK+K+K EK +K+ + +K + K K
Sbjct: 33 RAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 28.0 bits (63), Expect = 4.4
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 22 KKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
K + KK+K+K E+ +K+ + +K ++ K +
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSKF 68
>gnl|CDD|220207 pfam09368, Sas10_Utp3_C, Sas10 C-terminal domain. This family
contains a C-terminal presumed domain in Sas10 which
hash been identified as a regulator of chromatin
silencing.
Length = 76
Score = 30.7 bits (70), Expect = 0.17
Identities = 13/53 (24%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 6 RLKTKKKKKKK----KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
R + + +K K K+K++++ + KK+KK E+ K+ K +++ +++ Y
Sbjct: 7 RKISYQIEKNKGLTRKRKKDRRNPRVKKRKKYEKAVKRLKSQRRVVREEDGGY 59
Score = 28.8 bits (65), Expect = 0.93
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K+K + EK K +K+KK+ + KK+KK +K K+
Sbjct: 5 GKRKISYQIEKNKGLTRKRKKDRRNPRVKKRKKYEKAVKRL 45
Score = 26.8 bits (60), Expect = 4.7
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K+K + +K K +K+K++ + + KK+KK +K KRL
Sbjct: 5 GKRKISYQIEKNKGLTRKRKKDRRNPRVKKRKKYEKAVKRL 45
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 32.8 bits (75), Expect = 0.17
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
K K+ +K KK KKK K+K EE+KK + K
Sbjct: 52 KKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDK 89
Score = 31.3 bits (71), Expect = 0.44
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
+ KKK+ +K KK KKK K++ +++KK + K
Sbjct: 50 QPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDK 89
Score = 30.9 bits (70), Expect = 0.68
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K+ KKK+ K KK KKK++EK +++KK + K
Sbjct: 49 KQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDK 89
Score = 30.5 bits (69), Expect = 1.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K KKK+ ++ KK KKK KE+ +++KK + K
Sbjct: 49 KQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDK 89
Score = 30.1 bits (68), Expect = 1.1
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ + K+ KKK+ +K KK KK++++K +++KK + K
Sbjct: 45 IPSPKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDK 89
Score = 29.7 bits (67), Expect = 1.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 25 KKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K+ KKK+ +K KK KKK K++L
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEKL 76
Score = 28.6 bits (64), Expect = 4.0
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 6 RLKTKKKKKKKKKKEEKKKKK-KKKKKKEEEKKKKKKKKKKKKKKKK 51
TKK KKK K+K +++KK + K EE + ++ ++
Sbjct: 62 PATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQE 108
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 33.5 bits (76), Expect = 0.18
Identities = 13/45 (28%), Positives = 35/45 (77%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
L + K KK+++ EK K++ ++K +EE +++K+K+K++++++++
Sbjct: 572 LASSKLAKKREEAVEKAKREAEQKAREEREREKEKEKERERERER 616
Score = 32.0 bits (72), Expect = 0.52
Identities = 14/41 (34%), Positives = 33/41 (80%), Gaps = 2/41 (4%)
Query: 14 KKKKKKEE--KKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K KK+EE +K K++ ++K EE++++K+K+K+++++++R
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKERERERER 616
Score = 32.0 bits (72), Expect = 0.62
Identities = 11/45 (24%), Positives = 36/45 (80%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K KK+++ +K +++ ++K ++++E EK+K+K+++++++++ +R
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAER 620
Score = 30.4 bits (68), Expect = 1.7
Identities = 10/45 (22%), Positives = 36/45 (80%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+L K+++ +K K E ++K ++++++E+EK+K+++++++++ ++
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAER 620
Score = 29.7 bits (66), Expect = 2.9
Identities = 10/35 (28%), Positives = 29/35 (82%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
K++ ++K +EE++++K+K+K++E E++++ ++ K
Sbjct: 589 KREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 29.7 bits (66), Expect = 3.2
Identities = 10/44 (22%), Positives = 35/44 (79%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K ++ +K K++ E+K +++++++KE+EK+++++++++ ++ K
Sbjct: 580 KREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 33.1 bits (75), Expect = 0.18
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKK-----KKKKKKKEEEKKKKKKKKKKKKKKKK 51
L+ K K + K K E + + KKK KE KK K +KK K K
Sbjct: 256 LKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKKAIKNAAK 309
Score = 32.7 bits (74), Expect = 0.26
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ L K K + K K E + + ++K K+ KK K +KK
Sbjct: 254 ARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKK 302
Score = 28.8 bits (64), Expect = 3.9
Identities = 11/49 (22%), Positives = 17/49 (34%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
G K K + + K + + + KKK K+ KK K
Sbjct: 251 EAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKM 299
Score = 28.5 bits (63), Expect = 5.0
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 9 TKKKKKKKKKKEEKKKK----KKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K K E K K + KKK K+ KK K +K+
Sbjct: 255 RLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKK 302
>gnl|CDD|216985 pfam02349, MSG, Major surface glycoprotein. This is a novel
repeat in Pneumocystis carinii Major surface
glycoprotein (MSG) some members of the alignment have
up to nine repeats of this family, the repeats
containing several conserved cysteines. The MSG of P.
carinii is an important protein in host-pathogen
interactions. Surface glycoprotein A from Pneumocystis
carinii is a main target for the host immune system,
this protein is implicated in the attachment of
Pneumocystis carinii to the host alveolar epithelial
cells, alveolar macrophages, host surfactant and
possibly accounts in part for the hypoxia seen in
Pneumocystis carinii pneumonia (PCP).
Length = 81
Score = 30.9 bits (70), Expect = 0.18
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
L+ + KK K ++ K+ K + KKKK+ +K K+K K KK+ +
Sbjct: 33 LKEKCYKLKKDLKLEELLLKELKGELKKKKKCKKALKEKCTKLKKESNE 81
Score = 30.1 bits (68), Expect = 0.33
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
LK K K KK K E+ K+ K + +++KK KK K+K K KK
Sbjct: 33 LKEKCYKLKKDLKLEELLLKELKGELKKKKKCKKALKEKCTKLKKE 78
Score = 27.4 bits (61), Expect = 2.7
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K+K +K KE+ K KK K +E K+ K + KKKKK KK L
Sbjct: 25 LLKEKCEKLKEKCYKLKKDLKLEELLLKELKGELKKKKKCKKAL 68
Score = 27.4 bits (61), Expect = 3.2
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
LE K+K +K K++ K KK K ++ K+ K + KKKKK KK
Sbjct: 19 LEEACPLLKEKCEKLKEKCYKLKKDLKLEELLLKELKGELKKKKKCKKA 67
>gnl|CDD|234707 PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.
Length = 64
Score = 30.2 bits (69), Expect = 0.18
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
K+K +K E ++++ +K E+ K+KK +K+++KK R
Sbjct: 20 KRKVEKAGILRELRRREFYEKPSEKRKRKKAAARKRRRKKLAREE 64
>gnl|CDD|218738 pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap
is involved in recombination. Rap (recombination adept
with plasmid) increases lambda-by-plasmid recombination
catalyzed by Escherichia coli's RecBCD pathway.
Length = 188
Score = 32.3 bits (74), Expect = 0.18
Identities = 11/31 (35%), Positives = 23/31 (74%)
Query: 22 KKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K++K ++KK+K E + ++++ K +K+K K R
Sbjct: 35 KREKAQEKKRKAEAQAERRELKARKEKLKTR 65
Score = 31.5 bits (72), Expect = 0.42
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK 43
LK +K ++KK+K E + ++++ K +KE+ K + K
Sbjct: 34 LKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLK 70
Score = 30.8 bits (70), Expect = 0.64
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K EK ++KK+K + + E+++ K +K+K K + L
Sbjct: 33 ALKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWL 69
Score = 29.6 bits (67), Expect = 1.4
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K++K +EKK+K + + ++ E K +K+K K + K
Sbjct: 33 ALKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLK 70
Score = 28.5 bits (64), Expect = 3.8
Identities = 10/38 (26%), Positives = 24/38 (63%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K++K +E+K+K + + +++E + +K+K K + K
Sbjct: 33 ALKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLK 70
>gnl|CDD|215227 PLN02406, PLN02406, ethanolamine-phosphate cytidylyltransferase.
Length = 418
Score = 33.1 bits (75), Expect = 0.19
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Query: 40 KKKKKKKKKKKKRLYLPTSIPLSHYFKKAHMVPRCNAMRQ 79
KKKKKKK R+Y+ + HY NA+RQ
Sbjct: 43 GIFKKKKKKKPVRVYMDGCFDMMHYG-------HANALRQ 75
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 33.4 bits (76), Expect = 0.20
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSH 63
+ KK+ K EK K K+K K +E+ K + KK++ ++K P+S H
Sbjct: 730 SAPKKQTSKTASEKSSSKGKRKHKNDEEADKIESKKQRLEEKSSSCSPSSSSSHH 784
Score = 28.7 bits (64), Expect = 5.0
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 15/70 (21%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEK---------------KKKKKKKKKKKKKKKR 52
K+ K K+K K +E+ K + KK++ EEK K+ +K + K++
Sbjct: 743 KSSSKGKRKHKNDEEADKIESKKQRLEEKSSSCSPSSSSSHHHSSSNKESRKSSRNKEEE 802
Query: 53 LYLPTSIPLS 62
+ S PLS
Sbjct: 803 MLPSPSSPLS 812
Score = 28.3 bits (63), Expect = 7.2
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K +K KK+ K E+ K K+K K ++ K
Sbjct: 716 KKGVPPKPAEKDSLSAPKKQTSKTASEKSSSKGKRKHKNDEEADKI 761
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 32.5 bits (74), Expect = 0.20
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
KT KK +K+EEK+ + K KEEE+K + ++ +K+K+
Sbjct: 29 KTFIIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAG 71
Score = 28.6 bits (64), Expect = 3.0
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK +KEE+K+ + K +EE++K + ++ +K+K+
Sbjct: 33 IKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGE 72
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 32.8 bits (75), Expect = 0.21
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K + ++ +KK++ + KKKKE E+ K +KK + K+K+L
Sbjct: 78 KELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQL 123
Score = 32.0 bits (73), Expect = 0.33
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K + +K+ + ++ KKK++ E KKKK+ ++ K +KK
Sbjct: 72 QKPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKK 113
Score = 32.0 bits (73), Expect = 0.36
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
K+ + E+ KKK++ + KK++E ++ K +KK
Sbjct: 76 DEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKK 113
Score = 31.3 bits (71), Expect = 0.68
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K + +K+ + ++ KKK+E E KKKK+ ++ K +KK
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKK 113
Score = 30.9 bits (70), Expect = 0.86
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K + +K+ E ++ KKK++ + ++KK+ ++ K +KK
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKK 113
Score = 30.1 bits (68), Expect = 1.3
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
L + ++ KK+E+ + KKKK+ +E + +KK + K+K+
Sbjct: 80 LSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQ 122
Score = 29.3 bits (66), Expect = 2.5
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K E +K+ + E+ KKK++ + KKKK+ + L
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEEL 107
Score = 29.3 bits (66), Expect = 2.9
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K + +K+ + ++ KKKEE + KKKK+ ++ K +K++
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKI 114
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 32.5 bits (74), Expect = 0.21
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 23/66 (34%)
Query: 10 KKKKKKKKKKEEKKKKKKKK-----------------------KKKEEEKKKKKKKKKKK 46
+K+K+++K K++K++ ++KE+E+KKK K+ K++
Sbjct: 142 AQKRKREQKARAAKERKERLVAEAREHFGYWVDPRDPRFQEMLQQKEKEEKKKVKEAKRR 201
Query: 47 KKKKKR 52
+K++KR
Sbjct: 202 EKEEKR 207
Score = 30.2 bits (68), Expect = 1.1
Identities = 11/23 (47%), Positives = 20/23 (86%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKK 29
L+ K+K++KKK KE K+++K++K
Sbjct: 184 LQQKEKEEKKKVKEAKRREKEEK 206
Score = 30.2 bits (68), Expect = 1.4
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
++K+KEEKKK K+ K++++EEK+
Sbjct: 185 QQKEKEEKKKVKEAKRREKEEKRMAALVAA 214
Score = 29.0 bits (65), Expect = 2.7
Identities = 11/52 (21%), Positives = 31/52 (59%), Gaps = 8/52 (15%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKK--------EEEKKKKKKKKKKKKKKKKRL 53
+++K+K+ +++ ++ + K K +K+K+++K + K++K+RL
Sbjct: 110 EQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKRKREQKARAAKERKERL 161
Score = 29.0 bits (65), Expect = 2.9
Identities = 10/52 (19%), Positives = 27/52 (51%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ K K+ +++ ++ E K K + + + +K+K+++K + K+R
Sbjct: 107 ENREQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKRKREQKARAAKERK 158
Score = 27.9 bits (62), Expect = 7.9
Identities = 9/30 (30%), Positives = 21/30 (70%)
Query: 21 EKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
++K+K++KKK KE ++++K++K+
Sbjct: 185 QQKEKEEKKKVKEAKRREKEEKRMAALVAA 214
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 32.4 bits (74), Expect = 0.22
Identities = 6/41 (14%), Positives = 26/41 (63%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
++ + ++ KEE+K+ + K+++ +K+ ++ +++ ++
Sbjct: 57 QETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEE 97
Score = 28.9 bits (65), Expect = 2.7
Identities = 9/47 (19%), Positives = 27/47 (57%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
E + + K+ K EK+ ++ +++ +EE+++ + +K+ ++K
Sbjct: 68 EEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKT 114
Score = 28.9 bits (65), Expect = 3.5
Identities = 9/44 (20%), Positives = 22/44 (50%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+++ KK + ++ + ++ KEEEK+ + K+ K +
Sbjct: 42 DQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAE 85
Score = 27.8 bits (62), Expect = 8.0
Identities = 8/44 (18%), Positives = 26/44 (59%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K ++K+ + +E K +K+ ++ EE+ +++ ++ + +K+
Sbjct: 66 KEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKE 109
>gnl|CDD|187774 cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR
(Clustered Regularly Interspaced Short Palindromic
Repeats) and associated Cas proteins comprise a system
for heritable host defense by prokaryotic cells against
phage and other foreign DNA; Very large protein
containing McrA/HNH-nuclease related domain and a
RuvC-like nuclease domain; signature gene for type II.
Length = 799
Score = 33.2 bits (76), Expect = 0.22
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
M+ E K +KK++K+ + K+ E++ K+ K K K RLY
Sbjct: 520 MARENGTNKGTKNRKKRQKKNEDNIKEAASALEQKLKELPLDIKSKNILKLRLYY 574
>gnl|CDD|240292 PTZ00148, PTZ00148, 40S ribosomal protein S8; Provisional.
Length = 205
Score = 32.3 bits (74), Expect = 0.23
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
KKKK KKEE+ KK KKK + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 30.7 bits (70), Expect = 0.78
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 25 KKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KKKK KK+EE KK KKK + K + R
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVR 150
Score = 30.3 bits (69), Expect = 0.95
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
KKKK K+E++ KK KKK + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 30.3 bits (69), Expect = 1.1
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
KKKK +K+++ KK KKK E K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 30.0 bits (68), Expect = 1.2
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
KKKK KK+EE KK KKK + + + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 29.6 bits (67), Expect = 1.6
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
KKK+ KK+++ KK KK+ E K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 29.6 bits (67), Expect = 2.0
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK 43
KKKK KK++E KK KKK + + + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 29.2 bits (66), Expect = 2.1
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 22 KKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSI 59
KKKK KK+++ ++ KKK + K + +KK + ++
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHKIDKAL 160
Score = 29.2 bits (66), Expect = 2.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK 41
L KKK KK+++ ++ KKK + K E +KK K
Sbjct: 121 LGKKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 29.2 bits (66), Expect = 2.6
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
KKKK +++++ KK KKK E K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 28.8 bits (65), Expect = 2.9
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK 42
KKKK KK+++ +K KKK + + E +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 27.6 bits (62), Expect = 8.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K + KKKK KK+++ ++ KKK + K + +K
Sbjct: 114 AKHYGIDLGKKKKYKKEEENKKAKKKSESLVAKLEVRK 151
Score = 27.3 bits (61), Expect = 9.0
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
KK++ KK+++ KK K++ + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
>gnl|CDD|227935 COG5648, NHP6B, Chromatin-associated proteins containing the HMG
domain [Chromatin structure and dynamics].
Length = 211
Score = 32.5 bits (74), Expect = 0.23
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ K E+ K K + +E KKKK K KK K++
Sbjct: 160 PKVEGPSPDKALVEETKIISKAWSELDESKKKKYIDKYKKLKEE 203
Score = 32.1 bits (73), Expect = 0.25
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E +++ K + K ++ K K E ++ KKKK K KK K+
Sbjct: 154 NEPKIRPKVEGPSPDKALVEETKIISKAWSELDESKKKKYIDKYKKLKE 202
Score = 29.1 bits (65), Expect = 2.4
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
R K + K EE K K + +E KKKK K KK K++
Sbjct: 159 RPKVEGPSPDKALVEETKIISKAWSELDESKKKKYIDKYKKLKEE 203
Score = 28.7 bits (64), Expect = 3.4
Identities = 14/46 (30%), Positives = 18/46 (39%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
K + K ++ K K E + KKKK K KK K Y
Sbjct: 160 PKVEGPSPDKALVEETKIISKAWSELDESKKKKYIDKYKKLKEEYD 205
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 32.7 bits (75), Expect = 0.23
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK K K+K K+++K+EE K++ ++ +K K+ +K
Sbjct: 242 KKIKALRAKEKAAKRREKREELKERAEEIYEKFKRGEK 279
Score = 32.0 bits (73), Expect = 0.41
Identities = 12/44 (27%), Positives = 28/44 (63%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+K K+ +K+ E+ KK ++ +K +E K + + KKK ++ +++
Sbjct: 138 QKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKI 181
Score = 31.2 bits (71), Expect = 0.63
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
KK K K+K K+++K EE K++ ++ +K K+ ++L
Sbjct: 242 KKIKALRAKEKAAKRREKREELKERAEEIYEKFKRGEKL 280
Score = 30.4 bits (69), Expect = 1.2
Identities = 13/48 (27%), Positives = 32/48 (66%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+L+ L+ +KK K + +EK K+++K+++ +E+ ++ +K K+ +K
Sbjct: 232 NLQNELRELEKKIKALRAKEKAAKRREKREELKERAEEIYEKFKRGEK 279
Score = 29.6 bits (67), Expect = 2.3
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ KK + EE + + + ++ E++ K + K+K K+++KR
Sbjct: 217 VELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKR 260
Score = 28.9 bits (65), Expect = 3.5
Identities = 10/38 (26%), Positives = 26/38 (68%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
KK K + ++K K+++K++E +++ ++ +K K+ +K
Sbjct: 242 KKIKALRAKEKAAKRREKREELKERAEEIYEKFKRGEK 279
Score = 28.9 bits (65), Expect = 3.8
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
L +++++ +K +E +K+ + KK EE +K K+ K + + KK+
Sbjct: 128 LTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKA 174
Score = 28.1 bits (63), Expect = 7.4
Identities = 13/48 (27%), Positives = 29/48 (60%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
L ++K +K+ + KK ++ +K K+ K E ++ KKK ++ +K ++
Sbjct: 136 LVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQE 183
Score = 27.7 bits (62), Expect = 9.0
Identities = 9/47 (19%), Positives = 28/47 (59%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
++ ++ + + E ++ +KK K + +EK K+++K+++ K++
Sbjct: 222 KIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKREELKERAE 268
>gnl|CDD|205219 pfam13038, DUF3899, Domain of unknown function (DUF3899).
Putative Tryptophanyl-tRNA synthetase.
Length = 92
Score = 30.8 bits (70), Expect = 0.23
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
++ + +KK+K +E+E KK KKKK
Sbjct: 35 RRLFRQLVEKKEKDSIEEDEFANDKKVKKKKYSVFTWTA 73
Score = 29.2 bits (66), Expect = 0.82
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
++ ++ +KK+K +++E KK KKKK L
Sbjct: 35 RRLFRQLVEKKEKDSIEEDEFANDKKVKKKKYSVFTWTAPL 75
>gnl|CDD|235516 PRK05582, PRK05582, DNA topoisomerase I; Validated.
Length = 650
Score = 32.9 bits (76), Expect = 0.26
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 2 SLEGRLKTKKKK------KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+++ K KKK K KK E K ++ K+ E KKK K K KKK++KR
Sbjct: 192 TIDAEFKKGKKKFEASFYGYKGKKIELKNEEDVKEILAELKKKDFKVSKVKKKERKR 248
Score = 32.1 bits (74), Expect = 0.40
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
E K KK + K EE K+ + KK++ K K KKK++K+
Sbjct: 203 KFEASFYGYKGKKIELKNEEDVKEILAELKKKDFKVSKVKKKERKRNP 250
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 32.9 bits (75), Expect = 0.26
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK---KKRLYLPTSIP 60
EG++ K +K ++ + + K KK E ++ KK+K+K+K++ +K L L
Sbjct: 416 EGKITIKVEKSEEDTLDLEIKSIKKYFPFIEFEEVKKEKEKEKERPEFVEKVLELFKGSK 475
Query: 61 LSHYFKK 67
+ Y KK
Sbjct: 476 IITYKKK 482
Score = 29.0 bits (65), Expect = 4.1
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 4 EGRLKTKKKKKKKKK-----KEEKKKKKKKKKKKEEEKKKKK------KKKKKKKKKKKR 52
E + K KK EE KK+K+K+K++ E +K K KKKK K
Sbjct: 427 EEDTLDLEIKSIKKYFPFIEFEEVKKEKEKEKERPEFVEKVLELFKGSKIITYKKKKGKD 486
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is
functionally equivalent to L7/L12 in bacteria and the
P1 and P2 proteins in eukaryotes. L12p is homologous to
P1 and P2 but is not homologous to bacterial L7/L12. It
is located in the L12 stalk, with proteins L10, L11,
and 23S rRNA. L12p is the only protein in the ribosome
to occur as multimers, always appearing as sets of
dimers. Recent data indicate that most archaeal species
contain six copies of L12p (three homodimers), while
eukaryotes have four copies (two heterodimers), and
bacteria may have four or six copies (two or three
homodimers), depending on the species. The organization
of proteins within the stalk has been characterized
primarily in bacteria, where L7/L12 forms either two or
three homodimers and each homodimer binds to the
extended C-terminal helix of L10. L7/L12 is attached to
the ribosome through L10 and is the only ribosomal
protein that does not directly interact with rRNA.
Archaeal L12p is believed to function in a similar
fashion. However, hybrid ribosomes containing the large
subunit from E. coli with an archaeal stalk are able to
bind archaeal and eukaryotic elongation factors but not
bacterial elongation factors. In several mesophilic and
thermophilic archaeal species, the binding of 23S rRNA
to protein L11 and to the L10/L12p pentameric complex
was found to be temperature-dependent and cooperative.
Length = 106
Score = 30.9 bits (70), Expect = 0.27
Identities = 10/25 (40%), Positives = 22/25 (88%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEE 34
++K ++K+EEKKK+++K++++EE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 30.9 bits (70), Expect = 0.30
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 18 KKEEKKKKKKKKKKKEEEKKK 38
EEK ++K+++KKKEEEK++
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEE 93
Score = 30.5 bits (69), Expect = 0.37
Identities = 11/25 (44%), Positives = 22/25 (88%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEE 35
++K ++KEE+KKK+++K+++EEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 29.4 bits (66), Expect = 0.99
Identities = 8/21 (38%), Positives = 18/21 (85%)
Query: 19 KEEKKKKKKKKKKKEEEKKKK 39
E+K ++K+++KK+EE+K++
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEE 93
Score = 27.1 bits (60), Expect = 5.9
Identities = 9/21 (42%), Positives = 18/21 (85%)
Query: 24 KKKKKKKKKEEEKKKKKKKKK 44
++K ++KEEEKKK+++K++
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEE 93
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome,
requires the ordered recruitment of Slu7, Prp18, and
Prp22 to the spliceosome. There is a close functional
relationship between Prp8, Prp18, and Slu7, and Prp18
interacts with Slu7, so that together they recruit Prp22
to the spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 32.4 bits (74), Expect = 0.28
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHY 64
TK + +KK+KE+K++ K +KK+ EK ++ K K+ L L S Y
Sbjct: 156 TKLELLRKKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPKE---LLLGQSEDYVEY 208
Score = 28.6 bits (64), Expect = 4.8
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK-------------KKKKKKKKKKRL 53
L+ K+K+KK++ K +KK+ +K EE K K + KKKK K
Sbjct: 161 LRKKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPKELLLGQSEDYVEYDRAGKKKKAKSK 220
Query: 54 YLPTSIPLSH 63
Y +H
Sbjct: 221 YEEDVFINNH 230
>gnl|CDD|225620 COG3078, COG3078, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 169
Score = 31.7 bits (72), Expect = 0.28
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K+ KK ++ K KK ++K +EE + + +K++KK+K
Sbjct: 2 KRSKKTRRPRSKADKKARRKTREELDAEARDRKRQKKRK 40
Score = 31.4 bits (71), Expect = 0.37
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K+ KK ++ K KK ++K EE + + +K++KK+K
Sbjct: 2 KRSKKTRRPRSKADKKARRKTREELDAEARDRKRQKKRK 40
Score = 31.4 bits (71), Expect = 0.43
Identities = 12/40 (30%), Positives = 28/40 (70%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
+K KK ++ + K +KK ++K +++ + E + +K++KK+K
Sbjct: 1 MKRSKKTRRPRSKADKKARRKTREELDAEARDRKRQKKRK 40
Score = 31.0 bits (70), Expect = 0.49
Identities = 11/39 (28%), Positives = 27/39 (69%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K+ KK ++ + + KK ++K ++E + + + +K++KK+K
Sbjct: 2 KRSKKTRRPRSKADKKARRKTREELDAEARDRKRQKKRK 40
Score = 29.4 bits (66), Expect = 1.9
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K+ KK + + K KK ++K E+ + + +K++KK+K L
Sbjct: 2 KRSKKTRRPRSKADKKARRKTREELDAEARDRKRQKKRKGL 42
>gnl|CDD|241262 cd01228, PH_BCR-related, Breakpoint Cluster Region-related
pleckstrin homology (PH) domain. The BCR gene is one of
the two genes in the BCR-ABL complex, which is
associated with the Philadelphia chromosome, a product
of a reciprocal translocation between chromosomes 22 and
9. BCR is a GTPase-activating protein (GAP) for RAC1
(primarily) and CDC42. The Dbl region of BCR has the
most RhoGEF activity for Cdc42, and less activity
towards Rac and Rho. Since BCR possesses both GAP and
GEF activities, it may function to temporally regulate
the activity of these GTPases. It also displays
serine/threonine kinase activity. The BCR protein
contains multiple domains including an N-terminal kinase
domain, a RhoGEF domain, a PH domain, a C1 domain, a C2
domain, and a C-terminal RhoGAP domain. ABR, a related
smaller protein, is structurally similar to BCR, but
lacks the N-terminal kinase domain and has GAP activity
for both Rac and Cdc42. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 179
Score = 31.9 bits (73), Expect = 0.29
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
++ + KK K+K K+ E KK + +K +K+L
Sbjct: 89 EELVQMKKAISALKQKIKRDSA--ERKKAASSGSRAIEKLRKKL 130
Score = 30.0 bits (68), Expect = 1.3
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKK 39
+ + K+K K+ E+KK + E+ +KK
Sbjct: 96 KAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 28.1 bits (63), Expect = 4.6
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK-----KKKKK 46
K+ ++ + KK K+K K+ E +K K +KK
Sbjct: 86 KSSEELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 27.7 bits (62), Expect = 6.4
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
S E ++ KK K+K ++ ++KK + +K +KK
Sbjct: 87 SSEELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
>gnl|CDD|153271 cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization
module that binds membranes and detects membrane
curvature. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions including organelle
biogenesis, membrane trafficking or remodeling, and cell
division and migration. Mutations in BAR containing
proteins have been linked to diseases and their
inactivation in cells leads to altered membrane
dynamics. A BAR domain with an additional N-terminal
amphipathic helix (an N-BAR) can drive membrane
curvature. These N-BAR domains are found in amphiphysins
and endophilins, among others. BAR domains are also
frequently found alongside domains that determine lipid
specificity, such as the Pleckstrin Homology (PH) and
Phox Homology (PX) domains which are present in beta
centaurins (ACAPs and ASAPs) and sorting nexins,
respectively. A FES-CIP4 Homology (FCH) domain together
with a coiled coil region is called the F-BAR domain and
is present in Pombe/Cdc15 homology (PCH) family
proteins, which include Fes/Fes tyrosine kinases, PACSIN
or syndapin, CIP4-like proteins, and srGAPs, among
others. The Inverse (I)-BAR or IRSp53/MIM homology
Domain (IMD) is found in multi-domain proteins, such as
IRSp53 and MIM, that act as scaffolding proteins and
transducers of a variety of signaling pathways that link
membrane dynamics and the underlying actin cytoskeleton.
BAR domains form dimers that bind to membranes, induce
membrane bending and curvature, and may also be involved
in protein-protein interactions. The I-BAR domain
induces membrane protrusions in the opposite direction
compared to classical BAR and F-BAR domains, which
produce membrane invaginations. BAR domains that also
serve as protein interaction domains include those of
arfaptin and OPHN1-like proteins, among others, which
bind to Rac and Rho GAP domains, respectively.
Length = 194
Score = 32.0 bits (73), Expect = 0.29
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
L+ LK K+ KK++K+ K + +E+ KK +KKKK K +
Sbjct: 85 LKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAE 132
Score = 30.1 bits (68), Expect = 1.2
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
KK K+ ++++KK K + + ++K KK +KKKK +L
Sbjct: 89 LKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLA 131
Score = 28.6 bits (64), Expect = 3.6
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
LK KK K+ K+ +KK K + + ++K KK +KKKK K
Sbjct: 85 LKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSK 129
Score = 27.8 bits (62), Expect = 6.7
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 5 GRLKTKKKKKKKKKKE-----EKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+K ++KK K + + EK KK +KKKK + + +++ ++ K+K
Sbjct: 94 KEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEK 143
Score = 27.8 bits (62), Expect = 7.0
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 3 LEGRLKTKKKKKKK--KKKEE----KKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
L+ LK KK++KK K + + ++K KK +KKK++ K + +++ ++ K+K L
Sbjct: 89 LKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEEL 147
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 32.0 bits (73), Expect = 0.29
Identities = 10/26 (38%), Positives = 21/26 (80%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKK 39
K KK++ E+K++++++K EEEK ++
Sbjct: 153 KIKKERAEEKEREEEEKAAEEEKARE 178
Score = 29.7 bits (67), Expect = 1.8
Identities = 11/28 (39%), Positives = 23/28 (82%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEE 35
K KK++ ++K++EE++K +++K +EEE
Sbjct: 153 KIKKERAEEKEREEEEKAAEEEKAREEE 180
Score = 28.2 bits (63), Expect = 6.7
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 27 KKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPL 61
K KK++ EEK++++++K +++K + + T PL
Sbjct: 153 KIKKERAEEKEREEEEKAAEEEKAREEEILTGNPL 187
>gnl|CDD|219572 pfam07780, Spb1_C, Spb1 C-terminal domain. This presumed domain is
found at the C-terminus of a family of FtsJ-like
methyltransferases. Members of this family are involved
in 60S ribosomal biogenesis.
Length = 212
Score = 31.9 bits (73), Expect = 0.30
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 15/54 (27%)
Query: 13 KKKKKKKEEKKKKKKKKK---------KKEEEKKK------KKKKKKKKKKKKK 51
K +KK + K+ +K KKK E EK K KK KKKKKK+KK
Sbjct: 117 KARKKMRALKRLEKAKKKAEAIAEDEDISEREKAKQIKKLYKKAKKKKKKRKKT 170
Score = 30.7 bits (70), Expect = 0.88
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Query: 6 RLKTKKKKKKKKKKEE----KKKKKKKKKKKEEEKKK--------KKKKKKKKKKKKK 51
+L K KKKKKK+K+ KK K K + + K K KK + K+K KK
Sbjct: 155 KLYKKAKKKKKKRKKTYVVAKKGNKGKAGRPKGVKGKYKVVDPRMKKDLRALKRKAKK 212
Score = 30.3 bits (69), Expect = 0.91
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 8 KTKKKKKKKKKK---EEKKKKKKKKKKKEEEKKKK------KKKKKKKKKKKKR 52
K KKKKKK+KK +K K K + K + K K KK + K+K K+
Sbjct: 159 KAKKKKKKRKKTYVVAKKGNKGKAGRPKGVKGKYKVVDPRMKKDLRALKRKAKK 212
Score = 29.6 bits (67), Expect = 1.7
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ K K+ KK K+ KKKKKK+KK KK K K + K K +
Sbjct: 147 REKAKQIKKLYKKAKKKKKKRKKTYVVAKKGNKGKAGRPKGVKGKY 192
>gnl|CDD|227925 COG5638, COG5638, Uncharacterized conserved protein [Function
unknown].
Length = 622
Score = 32.8 bits (74), Expect = 0.31
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIP 60
+ +L+T +K +K +E ++ +K+++ KK ++ K KK+ KK +I
Sbjct: 427 DDKLETTIEKLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIE 483
Score = 28.6 bits (63), Expect = 6.4
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
RLK ++ + K E K KK+K +K + ++ + K K+ K
Sbjct: 579 RLKNNIEQTQDGKPELKIKKRKAEKGDQRQELDRIVKSIKRSGK 622
>gnl|CDD|149048 pfam07768, PVL_ORF50, PVL ORF-50-like family. This is a family
of sequences found in both bacteria and bacteriophages.
This region is approximately 130 residues long and in
some cases is found as part of the PVL
(Panton-Valentine leukocidin) group of genes, which
encode a member of the leukocidin group of bacterial
toxins that kill leukocytes by creation of pores in the
cell membrane. PVL appears to be a virulence factor
associated with a number of human diseases.
Length = 118
Score = 30.9 bits (70), Expect = 0.31
Identities = 14/54 (25%), Positives = 31/54 (57%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
L L + K+ +E KK + ++++KE E ++K++K+ + ++KK L+
Sbjct: 37 WELSEALDAPYGMRLKEYREIKKSENIEQERKERELERKRRKEAELRRKKPHLF 90
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 32.5 bits (74), Expect = 0.33
Identities = 8/51 (15%), Positives = 27/51 (52%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTS 58
K +KK+ +K++ +++ ++ +++ + + ++ K KK+ + S
Sbjct: 344 KARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDAS 394
Score = 31.0 bits (70), Expect = 1.00
Identities = 10/44 (22%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 11 KKKKKKKKKEEKKKKKK-KKKKKEEEKKKKKKKKKKKKKKKKRL 53
KK + +K E K +KK+ +K++ E++ ++ ++++ R
Sbjct: 333 KKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARA 376
Score = 30.6 bits (69), Expect = 1.3
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 14/81 (17%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEE--------------KKKKKKKKKKKKKKKK 51
+K + +K + K KK+ +K++ E E + + ++ K KKK
Sbjct: 331 EIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGL 390
Query: 52 RLYLPTSIPLSHYFKKAHMVP 72
P S + P
Sbjct: 391 IDASPNEDTPSENEESKGSPP 411
Score = 28.3 bits (63), Expect = 6.4
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 19/67 (28%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKK-------------------KKKKKKKKK 46
L + + KK + EK + K +KK+ ++++ + + ++
Sbjct: 324 ELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAV 383
Query: 47 KKKKKRL 53
K KKK L
Sbjct: 384 KAKKKGL 390
>gnl|CDD|235132 PRK03577, PRK03577, acid shock protein precursor; Provisional.
Length = 102
Score = 30.8 bits (69), Expect = 0.34
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 9 TKKKKKKKKKKEE------KKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIP 60
T KK+ KK E KK K KK++K E+K + KK KK K P + P
Sbjct: 43 THHHKKQHKKAPEQKAQAAKKHHKNKKEQKAPEQKAQAAKKHAKKHSHKTAAKPAAQP 100
>gnl|CDD|219589 pfam07808, RED_N, RED-like protein N-terminal region. This
family contains sequences that are similar to the
N-terminal region of Red protein. This and related
proteins contain a RED repeat which consists of a
number of RE and RD sequence elements. The region in
question has several conserved NLS sequences and a
putative trimeric coiled-coil region, suggesting that
these proteins are expressed in the nucleus. The
function of Red protein is unknown, but efficient
sequestration to nuclear bodies suggests that its
expression may be tightly regulated of that the protein
self-aggregates extremely efficiently.
Length = 238
Score = 32.1 bits (73), Expect = 0.34
Identities = 11/48 (22%), Positives = 27/48 (56%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSH 63
KKKK+ +K+++ ++E K + + ++++K + Y P+S+
Sbjct: 1 KKKKKYAYLRKQEENAEKEINPKYRDRARERRKGINKDYDPSSLAAYR 48
>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional.
Length = 202
Score = 31.9 bits (73), Expect = 0.34
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K ++K+K++ KKK K +K KE KK K K K+
Sbjct: 154 KLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKKF 199
Score = 31.6 bits (72), Expect = 0.43
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
+K+K++ KKK K +K +E +KK K K + +
Sbjct: 157 EKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKKF 199
Score = 30.4 bits (69), Expect = 0.85
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K ++K+KE KKK K + K+ +KK K K
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIV 193
Score = 30.4 bits (69), Expect = 0.86
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+L+ K+K++ ++K K +K K+ ++ K K KK
Sbjct: 154 KLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
Score = 28.5 bits (64), Expect = 4.0
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
LE + K + KKK + +K K+ +KK + K KK
Sbjct: 155 LEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
Score = 28.5 bits (64), Expect = 4.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 21 EKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K ++K+K++ KKK K +K K+ +KK L
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKAL 185
>gnl|CDD|218688 pfam05680, ATP-synt_E, ATP synthase E chain. This family
consists of several ATP synthase E chain sequences
which are components of the CF(0) subunit.
Length = 83
Score = 30.1 bits (68), Expect = 0.35
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
KKK++K +E + ++K +K K KKK+ K++ K
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAK 67
Score = 29.4 bits (66), Expect = 0.69
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
++ KKK++K ++ E ++K +K K KKK+ K++ K
Sbjct: 28 HQRSLKKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAK 67
Score = 28.6 bits (64), Expect = 1.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
KKK++K E + ++K +K + KKK+ K++ K
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAK 67
Score = 28.2 bits (63), Expect = 1.8
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
KKKEEK ++ + ++K E+ K KKK+ K++ K L
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAKSL 69
Score = 27.4 bits (61), Expect = 3.4
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
KKK+E+ ++ + ++K E+ K KKK+ K++ K
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAK 67
Score = 26.3 bits (58), Expect = 7.9
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
KKK++K + + ++K +K + KKK+ K++ K
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAK 67
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 32.4 bits (74), Expect = 0.35
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
L+ KT+ + K EEK +++ E+ K+ K+ + K K
Sbjct: 895 LQNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQDKHKG 942
Score = 28.6 bits (64), Expect = 6.2
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 9/47 (19%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKK---------KKKKKKKKKKKKK 51
+ K E + K ++K +++ K+ K+ + K K
Sbjct: 896 QNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQDKHKG 942
>gnl|CDD|223747 COG0675, COG0675, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 364
Score = 32.3 bits (73), Expect = 0.36
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ +K K+ KK +K+ +KK + K +K K K + +++ + +R
Sbjct: 198 IPRDGRKLLKRLKKAQKRLSRKKSRSKRRKKAKLKLARLRERIRNRRK 245
Score = 28.9 bits (64), Expect = 4.3
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
RLK +K+ +KK K++KK K K ++ + ++K K KK
Sbjct: 208 RLKKAQKRLSRKKSRSKRRKKAKLKLARLRERIRNRRKDFHKLAKK 253
>gnl|CDD|218337 pfam04939, RRS1, Ribosome biogenesis regulatory protein (RRS1).
This family consists of several eukaryotic ribosome
biogenesis regulatory (RRS1) proteins. RRS1 is a nuclear
protein that is essential for the maturation of 25 S
rRNA and the 60 S ribosomal subunit assembly in
Saccharomyces cerevisiae.
Length = 164
Score = 31.5 bits (72), Expect = 0.36
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 10 KKKKKKKKK------KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K+ K +K K K+ KK EKK++ K +K++ K K+
Sbjct: 116 KRANKDLEKDWIIEVKPNDDPKEDPFAKKRREKKERVAKNEKRELKNKK 164
Score = 28.4 bits (64), Expect = 3.3
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 13 KKKKKKKEEKK-----KKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K+ K EK K K+ KK+++KK++ K +K+ L
Sbjct: 115 YKRANKDLEKDWIIEVKPNDDPKEDPFAKKRREKKERVAKNEKREL 160
>gnl|CDD|216807 pfam01956, DUF106, Integral membrane protein DUF106. This
archaebacterial protein family has no known function.
Members are predicted to be integral membrane proteins.
Length = 168
Score = 31.5 bits (72), Expect = 0.36
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
+K E+ +K++K+ +K+ E +K K KK +K++ L
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEEL 78
Score = 28.8 bits (65), Expect = 2.5
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+K +K +K++K+ +K+ +E K K KK +K+++ L
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEEL 78
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
Length = 405
Score = 32.1 bits (73), Expect = 0.37
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
R+ + + K K+EK KK+K+ KEE K K K
Sbjct: 342 RMALLAEAARVKAKKEKLAKKRKQVSKEEAAAIKAAGKAWYKTMISD 388
Score = 30.2 bits (68), Expect = 1.7
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHY 64
K ++ E + K KK+K +++K+ K++ K + + T I S Y
Sbjct: 338 KTARRMALLAEAARVKAKKEKLAKKRKQVSKEEAAAIKAAGKAWYKTMISDSDY 391
Score = 29.4 bits (66), Expect = 2.6
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
K ++ E + K KK+K ++ K+ K++ K K Y
Sbjct: 338 KTARRMALLAEAARVKAKKEKLAKKRKQVSKEEAAAIKAAGKAWY 382
Score = 29.4 bits (66), Expect = 3.0
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
KT ++ + K KK+K KK ++ K++ K K
Sbjct: 338 KTARRMALLAEAARVKAKKEKLAKKRKQVSKEEAAAIKAAGKA 380
Score = 28.6 bits (64), Expect = 5.3
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+L LK K ++ + + K KKE+ KK+K+ K++ K
Sbjct: 326 NLNAMLKLNPYAKTARRMALLAEAARVKAKKEKLAKKRKQVSKEEAAAIKA 376
>gnl|CDD|100810 PRK01194, PRK01194, V-type ATP synthase subunit E; Provisional.
Length = 185
Score = 31.4 bits (71), Expect = 0.38
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
MSLE +K +K +++KKKE + K+ +K E+E K + K+ +KK R
Sbjct: 1 MSLEDVIKDIEKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMR 52
>gnl|CDD|218437 pfam05107, DUF694, Family of unknown function (DUF694). Family of
hypothetical bacterial proteins.
Length = 278
Score = 31.8 bits (73), Expect = 0.38
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
++K+K +E + ++ + EE K+KKKKKKKKKKK++
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEE 101
Score = 31.4 bits (72), Expect = 0.51
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
++K+K E + ++ + +E K+KKKKKKKKKKK++ R ++
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREWM 106
Score = 30.3 bits (69), Expect = 1.4
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKK 37
G L + + ++ KE+KKKKKKKKKK+E +
Sbjct: 72 HGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
Score = 29.9 bits (68), Expect = 1.6
Identities = 14/42 (33%), Positives = 28/42 (66%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+K+K + E ++ + ++ +E+KKKKKKKKKK++ ++
Sbjct: 64 EKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
Score = 29.1 bits (66), Expect = 2.7
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
++K+K + E ++ + ++ +EKKKKKKKKKKK++ ++ +
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREWM 106
Score = 29.1 bits (66), Expect = 3.3
Identities = 13/43 (30%), Positives = 28/43 (65%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ K+K + + ++ + ++ KE++KKKKKKKKK++ ++
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
Score = 28.4 bits (64), Expect = 5.3
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSI 59
++K+K + + ++ + ++ ++KKKKKKKKKKK++ + I
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREWMCEKFI 111
>gnl|CDD|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional.
Length = 145
Score = 31.2 bits (71), Expect = 0.39
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTS 58
+ + K K KK K K+ K KK+K + + K + KK K +R+ +
Sbjct: 1 KAPAKKAKKKAKKAAKAAKKGVKVKKRKVRTSVRFFRPKTLRLPKKPKYPRRVKPASK 58
>gnl|CDD|217020 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain.
This domain is found associated with the Pfam tRNA
synthetase class II domain (pfam00587) and represents
the N-terminal domain of seryl-tRNA synthetase.
Length = 108
Score = 30.3 bits (69), Expect = 0.39
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ ++ + +E K KKKK+ E + K+ K + K + L
Sbjct: 49 QAERNELSKEIGKAKKKKEDAEALIAEVKELKDELKALEAEL 90
Score = 29.5 bits (67), Expect = 0.80
Identities = 9/44 (20%), Positives = 25/44 (56%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+++++ + + EE + ++ + K+ + KKKK+ + + K L
Sbjct: 36 EERRELQVELEELQAERNELSKEIGKAKKKKEDAEALIAEVKEL 79
Score = 29.5 bits (67), Expect = 0.88
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK----KKKRLYLPTSIP 60
L+ ++ + K+ + KKKK+ + E K+ K + K + + + + L SIP
Sbjct: 48 LQAERNELSKEIGKAKKKKEDAEALIAEVKELKDELKALEAELRELEAELDKLLLSIP 105
Score = 28.7 bits (65), Expect = 1.6
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK 41
G+ K KK+ + E K+ K + K + E ++ + +
Sbjct: 60 GKAKKKKEDAEALIAEVKELKDELKALEAELRELEAE 96
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 32.4 bits (73), Expect = 0.40
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
R+K KKK ++ + +K+ KKK +++ ++ +KK+
Sbjct: 643 RIKRIKKKAYRRIRRDKRLKKKMPEEENTQENHLGSEKKRHGG 685
Score = 32.4 bits (73), Expect = 0.43
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K+ KKK + ++ K+ KKK EEE ++ +KK+
Sbjct: 645 KRIKKKAYRRIRRDKRLKKKMPEEENTQENHLGSEKKRHGG 685
Score = 31.2 bits (70), Expect = 0.84
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
M R+K K ++ ++ K KKK +++ +E +KK+
Sbjct: 641 MRRIKRIKKKAYRRIRRDKRLKKKMPEEENTQENHLGSEKKRHGG 685
Score = 30.1 bits (67), Expect = 2.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ K+ KKK ++ + K+ KKK +EE ++ +KK+
Sbjct: 643 RIKRIKKKAYRRIRRDKRLKKKMPEEENTQENHLGSEKKRHGG 685
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 32.1 bits (73), Expect = 0.41
Identities = 17/107 (15%), Positives = 45/107 (42%), Gaps = 21/107 (19%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKK------------------KKKKKK 43
LE L+ +K+++++++ +K++++++ K + K+ + KK
Sbjct: 146 ELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQALLDELETSTLPAAELIAQHKKNS 205
Query: 44 KKKKKKKKRLYLPTSIPLSHYFKKAH---MVPRCNAMRQIYEHGPLV 87
K + + ++ S K + +VP + +Y + PL
Sbjct: 206 VKLEMQVEKPKPEKPNTFSTGIKMGYQISLVPVQKSEEALYPYQPLN 252
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 32.0 bits (73), Expect = 0.42
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+L + ++ K + +E +KK + E +KK ++ + + RL
Sbjct: 189 TLLSEQRAQQAKLAQLLEE----RKKTLAQLNSELSADQKKLEELRANESRL 236
Score = 28.9 bits (65), Expect = 4.1
Identities = 8/44 (18%), Positives = 20/44 (45%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
++ + E++ ++ K + EE KK + + +K+L
Sbjct: 183 EQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKL 226
Score = 28.1 bits (63), Expect = 6.7
Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 6/70 (8%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK------KKKKRLYL 55
S E ++ + + + + K+ E K +K + +L
Sbjct: 242 SAEAAAAKAREAAAAAEAAAARARAAEAKRTGETYKPTAPEKMLISSTGGFGALRGQLAW 301
Query: 56 PTSIPLSHYF 65
P + + F
Sbjct: 302 PVTGRILRRF 311
>gnl|CDD|201249 pfam00472, RF-1, RF-1 domain. This domain is found in peptide
chain release factors such as RF-1 and RF-2, and a
number of smaller proteins of unknown function. This
domain contains the peptidyl-tRNA hydrolase activity.
The domain contains a highly conserved motif GGQ, where
the glutamine is thought to coordinate the water that
mediates the hydrolysis.
Length = 114
Score = 30.6 bits (70), Expect = 0.42
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKK 39
RLK K + + +KK EK K + + + ++K+K
Sbjct: 66 RLKAKLYEAELQKKREKTKPTRASQVRRGDRKEK 99
>gnl|CDD|220611 pfam10169, Laps, Learning-associated protein. This is a family of
121-amino acid secretory proteins. Laps functions in the
regulation of neuronal cell adhesion and/or movement and
synapse attachment. Laps binds to the ApC/EBP (Aplysia
CCAAT/enhancer binding protein) promoter and activates
the transcription of ApC/EBP mRNA.
Length = 124
Score = 30.6 bits (69), Expect = 0.42
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 1 MSLEGRLKTKKKKKKKKKKEE-----KKKKKKKKKKKEEEKKKKKKKKKKKK 47
M ++ + + KK + + + +++ KK KKK E+KKKKKK K
Sbjct: 73 MEVDNKAAVRNKKTLRDQHGQYPAWMNQRQAKKLKKKREKKKKKKKGAKNLA 124
Score = 29.8 bits (67), Expect = 0.88
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K + KK + + + +++ ++ KKK++KKKKKKK K L
Sbjct: 78 KAAVRNKKTLRDQHGQYPAWMNQRQAKKLKKKREKKKKKKKGAKNL 123
Score = 27.9 bits (62), Expect = 3.6
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 24/69 (34%)
Query: 8 KTKKKKKKKKKKEE--------------KKKKKKKKKKKEE----------EKKKKKKKK 43
K ++ K+KKKKE K + KK +++ + KK KKK
Sbjct: 50 KPAEEVKEKKKKEGTESEEDDEKMEVDNKAAVRNKKTLRDQHGQYPAWMNQRQAKKLKKK 109
Query: 44 KKKKKKKKR 52
++KKKKKK+
Sbjct: 110 REKKKKKKK 118
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 31.9 bits (73), Expect = 0.42
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+EE K+ + +K+ E EKK +KK KK KK K
Sbjct: 75 EEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKD 108
Score = 29.2 bits (66), Expect = 3.3
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLS 62
L + + K+ + +K+ + +KK +KK ++ KK K ++ ++ + PL
Sbjct: 70 LREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEEPEPPLR 129
Query: 63 HYFKKAHMVPRCNAM-RQIYEHGPLVAIFS 91
P A+ + E+GP + IFS
Sbjct: 130 PRLIVNDATPE--ALLELLAENGPGLLIFS 157
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like
protein; Provisional.
Length = 438
Score = 32.1 bits (73), Expect = 0.43
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLS 62
+++K KKK+KKKK+ + K+KKK+K LP P +
Sbjct: 10 NQKDKNKKKEKKKKESPPPPHEIKRKKKRKGPDAASKLPKVTPNT 54
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This
family includes outer membrane proteins such as OmpH
among others. Skp (OmpH) has been characterized as a
molecular chaperone that interacts with unfolded
proteins as they emerge in the periplasm from the Sec
translocation machinery.
Length = 140
Score = 31.0 bits (71), Expect = 0.43
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKK----EEEKKKKKKKKKKKKKKKKRLY 54
LE K ++ + +K +KE +K K+K +K E ++KK+K+ +KK ++ +R
Sbjct: 23 LEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQ 78
Score = 30.6 bits (70), Expect = 0.54
Identities = 15/55 (27%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Query: 2 SLEGRLKTKKKKKKKKK----KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
LE L+ K+K +K + ++KK+K+ +KK +E ++K++K ++ +K+++
Sbjct: 36 KLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQDLQKRQQ 90
Score = 29.1 bits (66), Expect = 1.5
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ + +K+ KK++ E +K +K+ +K +E+ +K + ++KK
Sbjct: 18 AAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKE 64
Score = 27.5 bits (62), Expect = 5.1
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
K +K+ ++E KK++ + +K E+E +K K+K +K
Sbjct: 17 KAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDA 52
Score = 27.5 bits (62), Expect = 6.2
Identities = 12/44 (27%), Positives = 29/44 (65%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+K K+K +K + ++KK++E +KK ++ ++K++K ++ L
Sbjct: 42 QKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQDL 85
Score = 27.2 bits (61), Expect = 8.5
Identities = 13/51 (25%), Positives = 30/51 (58%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
S G+ K+ +K+ KK++ + +K +K+ +K +EK +K + ++K+
Sbjct: 13 SPAGKAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKK 63
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 32.3 bits (73), Expect = 0.43
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K KK KKK KK KK +K KK KK +K +K
Sbjct: 1009 KAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKAAGRKA 1052
Score = 31.1 bits (70), Expect = 1.1
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K KK KK KKK KK K+ +K KK KK +K
Sbjct: 1004 KAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKA 1047
Score = 30.0 bits (67), Expect = 2.2
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ K KK KK +K KK KK+ KK KK +K KK
Sbjct: 992 MKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKK 1038
Score = 29.6 bits (66), Expect = 3.4
Identities = 18/44 (40%), Positives = 20/44 (45%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K KK KK KK KKK K+ KK +K KK KK
Sbjct: 999 KAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKK 1042
Score = 28.0 bits (62), Expect = 9.9
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ KKK +K KK KK KK KKK KK K+
Sbjct: 988 TRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKK 1029
>gnl|CDD|211392 cd11380, Ribosomal_S8e_like, Eukaryotic/archaeal ribosomal
protein S8e and similar proteins. This family contains
the eukaryotic/archaeal ribosomal protein S8, a
component of the small ribosomal subunits, as well as
the NSA2 gene product.
Length = 138
Score = 31.0 bits (71), Expect = 0.43
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 27 KKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K+K K K +KK+K + +K
Sbjct: 4 KHKRKATGGKFKVVRKKRKYELGRKP 29
>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational
modification, protein turnover, chaperones].
Length = 372
Score = 32.1 bits (73), Expect = 0.45
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 12/84 (14%)
Query: 76 AMRQIYEHGPLVAIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPY----- 130
AM Y Y + HAV ++G+ DI
Sbjct: 229 AMFGFYGAVSSSMYIDATNSLG--ICIPYPYVDSGENWGHAVLIVGYDDSFDINNFKYGP 286
Query: 131 -----WLVANSWNDHWGDHGTFKI 149
+++ NSW +WG++G F I
Sbjct: 287 PGDGAFIIKNSWGTNWGENGYFWI 310
>gnl|CDD|146145 pfam03357, Snf7, Snf7. This family of proteins are involved in
protein sorting and transport from the endosome to the
vacuole/lysosome in eukaryotic cells.
Vacuoles/lysosomes play an important role in the
degradation of both lipids and cellular proteins. In
order to perform this degradative function,
vacuoles/lysosomes contain numerous hydrolases which
have been transported in the form of inactive
precursors via the biosynthetic pathway and are
proteolytically activated upon delivery to the
vacuole/lysosome. The delivery of transmembrane
proteins, such as activated cell surface receptors to
the lumen of the vacuole/lysosome, either for
degradation/downregulation, or in the case of
hydrolases, for proper localisation, requires the
formation of multivesicular bodies (MVBs). These late
endosomal structures are formed by invaginating and
budding of the limiting membrane into the lumen of the
compartment. During this process, a subset of the
endosomal membrane proteins is sorted into the forming
vesicles. Mature MVBs fuse with the vacuole/lysosome,
thereby releasing cargo containing vesicles into its
hydrolytic lumen for degradation. Endosomal proteins
that are not sorted into the intralumenal MVB vesicles
are either recycled back to the plasma membrane or
Golgi complex, or remain in the limiting membrane of
the MVB and are thereby transported to the limiting
membrane of the vacuole/lysosome as a consequence of
fusion. Therefore, the MVB sorting pathway plays a
critical role in the decision between recycling and
degradation of membrane proteins. A few archaeal
sequences are also present within this family.
Length = 169
Score = 31.1 bits (71), Expect = 0.45
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK---KKKRLY 54
+K ++ K+++ +KK KK + E KK KK K K+K+ Y
Sbjct: 7 RKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRY 53
Score = 30.3 bits (69), Expect = 1.0
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK---KKKKRL 53
E L +K ++ KK+E +KK KK + E +K KK K K+KKR
Sbjct: 1 EAILSLRKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRY 53
Score = 29.1 bits (66), Expect = 1.9
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKK---KKKKKKKKKKKRLY 54
KK++ +KK +K + + KK K+ K K+KK+ +K+ +L
Sbjct: 14 DKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQLD 61
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
[Translation, ribosomal structure and biogenesis].
Length = 335
Score = 31.8 bits (73), Expect = 0.45
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKK----KKKEEEKKKKKKKKKKKKKKKKRLYLPTSI 59
+G L KK K E++K+ KK+ E+ + + + +RL I
Sbjct: 38 KGVLTDLLKKLGKLSPLEERKEVGALINELKKEVEDAITELTPELEAAGLWERLAFEK-I 96
Query: 60 PLSH 63
++
Sbjct: 97 DVTL 100
>gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter. This domain is related
to pfam00005.
Length = 85
Score = 29.9 bits (68), Expect = 0.45
Identities = 12/48 (25%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEK-----KKKKKKKKKKKKKKKRL 53
++K+++ +++EK +K++K+ K+ E+ + K K K+ + + K L
Sbjct: 20 EQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAKASKAKQAQSRIKAL 67
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 31.9 bits (73), Expect = 0.47
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
M L + K + + K KKKK E K KK K + KK++L
Sbjct: 561 MGLPVPAEEAKVEAVDEVKFLKKKKGILDAGAFESTLKDKKNKVLPEAKKRKL 613
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 31.4 bits (72), Expect = 0.47
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEE--------EKKKKKKKKKKKKKKKKRLY 54
+LK + ++ K++ E + + +K KK +EE E+ K+ +K+ KK K + Y
Sbjct: 73 KLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKAELEKY 129
Score = 29.1 bits (66), Expect = 2.2
Identities = 12/51 (23%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 6 RLKTKKKKKKKKKKEE-KKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
++ K K + E+ KK+ ++ K++ E + + +K KK +++ ++R L
Sbjct: 58 SFPSQALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTEL 108
>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain. FH proteins control
rearrangements of the actin cytoskeleton, especially in
the context of cytokinesis and cell polarisation.
Members of this family have been found to interact with
Rho-GTPases, profilin and other actin-assoziated
proteins. These interactions are mediated by the
proline-rich FH1 domain, usually located in front of FH2
(but not listed in SMART). Despite this cytosolic
function, vertebrate formins have been assigned
functions within the nucleus. A set of Formin-Binding
Proteins (FBPs) has been shown to bind FH1 with their WW
domain.
Length = 392
Score = 31.9 bits (73), Expect = 0.48
Identities = 8/48 (16%), Positives = 27/48 (56%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K+ K +E KK++++++++++ K+ + ++ ++K+R
Sbjct: 321 KDFNEFLKEFSKAAEENIKKEEEEEERRKKLVKETTEYEQSSSRQKER 368
Score = 31.2 bits (71), Expect = 0.75
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
K ++ KK+++EE+++KK K+ E E+ ++K++
Sbjct: 331 SKAAEENIKKEEEEEERRKKLVKETTEYEQSSSRQKERNP 370
Score = 30.4 bits (69), Expect = 1.4
Identities = 6/39 (15%), Positives = 25/39 (64%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K ++ KK++++++++K+ K+ + ++ ++K++
Sbjct: 331 SKAAEENIKKEEEEEERRKKLVKETTEYEQSSSRQKERN 369
Score = 29.6 bits (67), Expect = 2.5
Identities = 9/40 (22%), Positives = 24/40 (60%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
++ KK++EE++++KK K+ E ++ ++K++
Sbjct: 331 SKAAEENIKKEEEEEERRKKLVKETTEYEQSSSRQKERNP 370
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a
molecular chaperone that interacts with unfolded
proteins as they emerge in the periplasm from the Sec
translocation machinery.
Length = 157
Score = 31.1 bits (71), Expect = 0.48
Identities = 13/39 (33%), Positives = 29/39 (74%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+KK+K+ +KEE+K +K+ EE +K K+++ ++K+++
Sbjct: 52 QKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQE 90
Score = 29.1 bits (66), Expect = 2.1
Identities = 11/44 (25%), Positives = 30/44 (68%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+K+ KK + + +KK+K+ +K++++ +K+ ++ +K K++ L
Sbjct: 41 EKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQEL 84
Score = 28.8 bits (65), Expect = 2.6
Identities = 13/51 (25%), Positives = 33/51 (64%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
LE K + + +KK+KE +K+++K +K+ ++ +K K+++ ++K++
Sbjct: 39 QLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQ 89
Score = 28.8 bits (65), Expect = 3.0
Identities = 11/53 (20%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Query: 2 SLEGRLKTKKKKKKKKK----KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
E L+ +++K +K+ +E +K K+++ ++K++E ++K++ +++ ++K
Sbjct: 53 KKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQQAAQQELQQK 105
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 31.9 bits (72), Expect = 0.49
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K+ + +K+E +K + + KK EE K K K K++ K
Sbjct: 270 KEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESK 313
Score = 30.4 bits (68), Expect = 1.3
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 5 GRLKTKKKKKK--KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K+ K+ + +K E +K + + KK +EE K K K K++ +
Sbjct: 264 ADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESK 313
Score = 30.4 bits (68), Expect = 1.7
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ KK ++ K ++ K K++ K EK+ + K+ + +KK++
Sbjct: 289 EIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKRE 331
Score = 30.0 bits (67), Expect = 2.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
E + ++ K K K K++ K +KE E K+ + +KK++
Sbjct: 289 EIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKRE 331
Score = 29.6 bits (66), Expect = 2.4
Identities = 8/44 (18%), Positives = 22/44 (50%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K ++K + +K++ + ++K++E + K K+ K+
Sbjct: 231 KAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQ 274
Score = 29.6 bits (66), Expect = 2.4
Identities = 8/48 (16%), Positives = 21/48 (43%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
++K + K++ + ++K++E K K K+ K++
Sbjct: 228 DADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQV 275
Score = 29.6 bits (66), Expect = 2.9
Identities = 10/47 (21%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 6 RLKTKKKKKKKKKKEEKKK--KKKKKKKKEEEKKKKKKKKKKKKKKK 50
R + ++K+++ K + K+ K+ E +K++ +K + + KK
Sbjct: 247 RDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKN 293
Score = 29.2 bits (65), Expect = 4.0
Identities = 10/49 (20%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 8 KTKKKKKKKKKKEEKKKKK-----KKKKKKEEEKKKKKKKKKKKKKKKK 51
K + + ++K+++ + K K+ K+ E +K++ +K + + KK
Sbjct: 245 KQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKN 293
Score = 28.8 bits (64), Expect = 4.4
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 10 KKKKKKKKKKEEKKKKKKKKK---KKEEEKKKKKKKKKKKKKKKKRL 53
K + + KK EE K K K K+E + +K+ + K+ + +KKR
Sbjct: 285 KAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKRE 331
Score = 28.8 bits (64), Expect = 4.6
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 6 RLKTKKKKKKKKKKEEKKKK----KKKKKKKEEEKKKKKKKKKKKKKKK 50
++ +K++ +K + E KK K K K + K++ K +K+ + K
Sbjct: 274 QVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDK 322
Score = 28.0 bits (62), Expect = 7.5
Identities = 8/50 (16%), Positives = 23/50 (46%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ + + K++ E ++K+++ K + K+ K+ + +KR
Sbjct: 232 AQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKR 281
Score = 28.0 bits (62), Expect = 8.5
Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKE--EEKKKKKKKKKKKKKKKKRLYLPTSIP 60
K++ K +K+ E K+ + +KK++ E+ +K K + + + + +S P
Sbjct: 309 KQESKASEKEAEDKELEAQKKREPVAEDLQKTKPQVEAQPTSLNEDAIDSSNP 361
Score = 27.7 bits (61), Expect = 9.8
Identities = 8/46 (17%), Positives = 25/46 (54%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
LK ++ ++ K+ ++ K++ KK+ ++ ++K + K++
Sbjct: 203 LKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRD 248
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 31.2 bits (71), Expect = 0.50
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
K+K++ EE+K+ KK +K + KKKK
Sbjct: 163 KQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 28.9 bits (65), Expect = 3.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
K+K++ +E K+ KK +K + KKKK
Sbjct: 163 KQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 28.1 bits (63), Expect = 5.2
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKK 38
+ + +++K+ KK +K E +KKK
Sbjct: 164 QKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 28.1 bits (63), Expect = 5.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+K K+KEE +++K+ KK +K + KKKK
Sbjct: 159 RKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
>gnl|CDD|223898 COG0828, RpsU, Ribosomal protein S21 [Translation, ribosomal
structure and biogenesis].
Length = 67
Score = 29.2 bits (66), Expect = 0.51
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K+K +K+ E K+++ +K E+ K+KK +K+K K+ ++
Sbjct: 20 KRKVEKEGILREMKEREFYEKPSEKRKRKKAAARKRKFKRLRKE 63
Score = 28.8 bits (65), Expect = 0.64
Identities = 14/56 (25%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 2 SLEGRLKTKKKK-------KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
L+ L+ K+K ++ K++E +K +K+K+K+ +K+K K+ +K++++
Sbjct: 11 PLDKALRRFKRKVEKEGILREMKEREFYEKPSEKRKRKKAAARKRKFKRLRKEQQR 66
Score = 27.7 bits (62), Expect = 1.7
Identities = 15/45 (33%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK---KKKKKKRLY 54
++ K+K E++ ++ K+++ EK +K+K+KK +K+K KRL
Sbjct: 17 RRFKRKVEKEGILREMKEREFYEKPSEKRKRKKAAARKRKFKRLR 61
Score = 26.1 bits (58), Expect = 5.8
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 7/49 (14%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
EG L+ K+++ +K EK+K+KK +K+K K+ +K++++
Sbjct: 26 EGILREMKEREFYEKPSEKRKRKK-------AAARKRKFKRLRKEQQRE 67
>gnl|CDD|235202 PRK04023, PRK04023, DNA polymerase II large subunit; Validated.
Length = 1121
Score = 32.2 bits (74), Expect = 0.52
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 7 LKTKK-KKKKKKKKEE-----KKKKKKKKKKKEEEKKKKKKKKKK 45
LK K K K K + ++ KK+K+EEE+KKK K K K
Sbjct: 251 LKAPKILKYVDKLKIDGWEWLEELISGKKEKEEEEEKKKIKPKDK 295
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 31.9 bits (73), Expect = 0.53
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 15/67 (22%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKK------------KKKK---KKKEEEKKKKKKKKKKK 46
L L+T K K E+K ++ + + K EE+ K++ ++ K
Sbjct: 213 DLMSLLRTVKPPPKPPMTPEEKDDEYDQRVRELTFDRRAQPTDRTKTEEELAKEEAERLK 272
Query: 47 KKKKKRL 53
K + +RL
Sbjct: 273 KLEAERL 279
>gnl|CDD|192292 pfam09429, Wbp11, WW domain binding protein 11. The WW domain is
a small protein module with a triple-stranded
beta-sheet fold. This is a family of WW domain binding
proteins.
Length = 78
Score = 29.5 bits (67), Expect = 0.54
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 16/64 (25%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKK----------------KKKEEEKKKKKKKKKKKKKKKK 51
K +KKK+ KK K E++ +++ K K +EE K + +K+K KK +K
Sbjct: 12 KEQKKKELKKNKAERQARREAKLAKKNPDRLQRELDKLKAQEESGKLRPVEKQKLKKLEK 71
Query: 52 RLYL 55
L
Sbjct: 72 DLDA 75
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases.and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain.
Expression of a construct consisting of only the
N-terminal domain of Saccharomyces pombe Cdc37 results
in cellular viability. This indicates that interactions
with the cochaperone Hsp90 may not be essential for
Cdc37 function.
Length = 154
Score = 30.8 bits (70), Expect = 0.54
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
++ + E+ KK + K KKE+++ +KK + +K++KKK
Sbjct: 100 EEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEEKKK 141
>gnl|CDD|227818 COG5531, COG5531, SWIB-domain-containing proteins implicated in
chromatin remodeling [Chromatin structure and dynamics].
Length = 237
Score = 31.3 bits (71), Expect = 0.55
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 7/80 (8%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK-RLYLPTSIPLSHYFKK-- 67
+K K K++ KE E + K+ KKKK S K
Sbjct: 73 TRKTTGKNDLPKEEDSSLPSSKETENGDTEGKETDKKKKSSTISKNSPSGEKVKLSPKLA 132
Query: 68 ----AHMVPRCNAMRQIYEH 83
R A+++++++
Sbjct: 133 AILGLEPGTRPEAVKKLWKY 152
>gnl|CDD|203462 pfam06476, DUF1090, Protein of unknown function (DUF1090). This
family consists of several bacterial proteins of unknown
function and is known as YqjC in E. coli.
Length = 115
Score = 30.3 bits (69), Expect = 0.56
Identities = 9/44 (20%), Positives = 28/44 (63%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ K ++K+++ E++++ K+ + K + K +KK++K + + +
Sbjct: 68 RQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAE 111
Score = 29.5 bits (67), Expect = 0.81
Identities = 10/49 (20%), Positives = 29/49 (59%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
L + K ++K+++ E +++ K+ + K + +K +KK++K + + +
Sbjct: 63 GLRAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAE 111
Score = 28.0 bits (63), Expect = 2.7
Identities = 9/41 (21%), Positives = 28/41 (68%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ +++ K E+K+++ ++++E ++ + K K +KK+++L
Sbjct: 65 RAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKL 105
>gnl|CDD|215059 PLN00111, PLN00111, accumulation of photosystem one; Provisional.
Length = 399
Score = 31.5 bits (72), Expect = 0.57
Identities = 13/62 (20%), Positives = 32/62 (51%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKKAH 69
+ K++KK + K +++ +E++K +K + ++ K L + +P++H KA
Sbjct: 45 RPYSKREKKPYPRPMKLLRREAREKKKLRKLQPERPLDPPKNGLLVKRLVPVAHEVYKAR 104
Query: 70 MV 71
+
Sbjct: 105 KL 106
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 31.6 bits (72), Expect = 0.57
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K+EK KKK K+K+K EK +K + KK KK K +
Sbjct: 69 KDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEI 103
Score = 27.7 bits (62), Expect = 7.8
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
++E K +K KKK K+KE K +K +K + KK KK K+ ++R+
Sbjct: 63 TIEWIFKDEKNKKKTKEKE-------KVLEKLVIQKTRFKKIKKIKEIRRRV 107
>gnl|CDD|236172 PRK08173, PRK08173, DNA topoisomerase III; Validated.
Length = 862
Score = 31.9 bits (73), Expect = 0.58
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
++ K KK K K E+ KK KK KK
Sbjct: 816 REPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKT 856
Score = 31.6 bits (72), Expect = 0.81
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
++ K K+ K K E+ KK KK KK
Sbjct: 815 PREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKT 856
Score = 31.2 bits (71), Expect = 0.81
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ K KK + K +K +K KK KK +K
Sbjct: 817 EPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARK 860
Score = 30.8 bits (70), Expect = 1.2
Identities = 11/43 (25%), Positives = 15/43 (34%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K KK K K +K ++ KK KK +K
Sbjct: 819 KAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 30.8 bits (70), Expect = 1.2
Identities = 11/44 (25%), Positives = 15/44 (34%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ K KK + K +K KK KK KK +
Sbjct: 816 REPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAAR 859
Score = 30.0 bits (68), Expect = 2.3
Identities = 12/45 (26%), Positives = 15/45 (33%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K KK K K ++ KK KK KK R
Sbjct: 815 PREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAAR 859
Score = 29.2 bits (66), Expect = 3.3
Identities = 10/49 (20%), Positives = 20/49 (40%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+G++ + + ++ K KK K + +K KK KK +
Sbjct: 806 DGKIGFEFEPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAK 854
Score = 28.9 bits (65), Expect = 5.2
Identities = 12/49 (24%), Positives = 16/49 (32%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
E R KK K K +K ++ KK KK +K
Sbjct: 814 EPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKTG 862
>gnl|CDD|217479 pfam03297, Ribosomal_S25, S25 ribosomal protein.
Length = 105
Score = 30.0 bits (68), Expect = 0.60
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K+++KK K K KKKK K K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
Score = 29.7 bits (67), Expect = 0.79
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK 41
KK++KK K K KKKK + K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
Score = 29.7 bits (67), Expect = 0.80
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 23 KKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK++KK K K KKKK K K +
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVK 33
Score = 29.3 bits (66), Expect = 0.95
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 22 KKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK++KK K K KKKK K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVK 33
Score = 28.1 bits (63), Expect = 2.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
KK++KK K + KKKK K K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
Score = 27.7 bits (62), Expect = 3.3
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEK 36
+ K K K KKKK K K ++K
Sbjct: 7 QKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 30.3 bits (69), Expect = 0.60
Identities = 11/38 (28%), Positives = 28/38 (73%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKK 40
++ R + ++ + ++KK +E++ K++ ++ KE E++KKK
Sbjct: 89 IDERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 29.2 bits (66), Expect = 1.4
Identities = 10/35 (28%), Positives = 26/35 (74%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
++ E ++ + ++KK EEE K++ ++ K+++++KK
Sbjct: 91 ERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKK 125
Score = 28.0 bits (63), Expect = 3.4
Identities = 9/32 (28%), Positives = 24/32 (75%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
++ + +E+K +++ K++ EE K+++++KKK
Sbjct: 95 AQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 27.2 bits (61), Expect = 5.8
Identities = 11/32 (34%), Positives = 24/32 (75%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
++ + EEKK +++ K++ EE K+++++KKK
Sbjct: 95 AQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 27.2 bits (61), Expect = 7.3
Identities = 9/32 (28%), Positives = 24/32 (75%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
++ + ++KK +EE K++ ++ K+++++KKK
Sbjct: 95 AQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 31.4 bits (71), Expect = 0.61
Identities = 11/39 (28%), Positives = 28/39 (71%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+K+ K++EK++ + +K KE+ +KK+++K++ + K+
Sbjct: 160 RKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRP 198
Score = 31.0 bits (70), Expect = 0.67
Identities = 12/44 (27%), Positives = 30/44 (68%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
E R ++ K+K+K++ ++ +K K+ ++KK+EE+++ + K+
Sbjct: 158 EHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGG 201
Score = 30.2 bits (68), Expect = 1.1
Identities = 12/37 (32%), Positives = 26/37 (70%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K+K+K++ E+ +K K+ ++KK+EEK++ + K+
Sbjct: 165 KQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGG 201
Score = 29.1 bits (65), Expect = 2.6
Identities = 13/40 (32%), Positives = 29/40 (72%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+KK + K+ K+K+K++ E+ +K K+ ++KK+++K+R
Sbjct: 152 RKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRR 191
Score = 29.1 bits (65), Expect = 3.2
Identities = 8/44 (18%), Positives = 24/44 (54%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
++ + +K KE+++KK+++K++ +E+K+ +
Sbjct: 170 RRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLST 213
Score = 28.7 bits (64), Expect = 3.7
Identities = 10/49 (20%), Positives = 26/49 (53%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
G+ K K++ + +K +E ++KK+++K++ +E K+ +
Sbjct: 164 GKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLS 212
Score = 28.3 bits (63), Expect = 4.8
Identities = 10/38 (26%), Positives = 28/38 (73%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+K+ ++K+K++ + +K +E ++KK+++K++ + KR
Sbjct: 160 RKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKR 197
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 31.7 bits (73), Expect = 0.66
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKK 28
L+ ++ KKKKK+K+ KK + +K
Sbjct: 732 LEKRRLKKKKKRKKVKKWEVEK 753
Score = 31.4 bits (72), Expect = 0.89
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKK 30
L +K++ KKKKK +K KK + +K
Sbjct: 730 LDLEKRRLKKKKKRKKVKKWEVEK 753
Score = 30.2 bits (69), Expect = 1.9
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 21 EKKKKKKKKKKKEEEKKKKKK 41
EK++ KKKKK+K+ +K + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 30.2 bits (69), Expect = 1.9
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKE 33
+K++ KKKK+ KK KK + +K E
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKIE 755
Score = 29.0 bits (66), Expect = 3.8
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 23 KKKKKKKKKKEEEKKKKKKKK 43
+K++ KKKKK ++ KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.0 bits (66), Expect = 4.4
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 22 KKKKKKKKKKKEEEKKKKKKK 42
+K++ KKKKK+++ KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
>gnl|CDD|240309 PTZ00189, PTZ00189, 60S ribosomal protein L21; Provisional.
Length = 160
Score = 30.7 bits (70), Expect = 0.66
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 27 KKKKKKEEEKKKKKKKKKKKKKKKKRLYLP 56
K+ + K + KKK + K++ P
Sbjct: 106 LKRVAANDAIKAEAKKKGELPSTKRQPAQP 135
Score = 27.7 bits (62), Expect = 5.9
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
+K + +E+ K+ + E KKK + K++
Sbjct: 97 RKSRCREDFLKRVAANDAIKAEAKKKGELPSTKRQ 131
Score = 27.7 bits (62), Expect = 6.9
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
+K + +++ K+ K E KKK + K++
Sbjct: 97 RKSRCREDFLKRVAANDAIKAEAKKKGELPSTKRQ 131
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 31.7 bits (73), Expect = 0.66
Identities = 6/33 (18%), Positives = 19/33 (57%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKK 38
R+ +++ K++ E K+ ++K+++ +K
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 29.8 bits (68), Expect = 2.2
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
++E K++ + +E ++K+KK +K
Sbjct: 513 EEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 29.0 bits (66), Expect = 4.2
Identities = 7/33 (21%), Positives = 19/33 (57%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ + +++ K++ E K+ ++K+KK +K
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 28.6 bits (65), Expect = 5.5
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
+++ K++ + KE E+K+KK +K
Sbjct: 513 EEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 28.2 bits (64), Expect = 7.1
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 21 EKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ +++ K++ E K+ ++K+KK +K
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 28.2 bits (64), Expect = 7.3
Identities = 6/29 (20%), Positives = 17/29 (58%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
+++ K++ + +E ++K+KK +K
Sbjct: 513 EEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 27.8 bits (63), Expect = 8.9
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKK 43
+++ K++ + K+ EEK+KK +K
Sbjct: 513 EEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 31.3 bits (71), Expect = 0.68
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEE 35
G K + K +K K KK+KK+++K + ++
Sbjct: 20 GPRPVKDEAKPRKIKRVKKRKKREEKDELDD 50
Score = 28.6 bits (64), Expect = 5.0
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 15 KKKKKEE-----KKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K+K KEE + + K+E K +K K+ KK+KK+
Sbjct: 3 KRKIKEEMLQILAPEIYGPRPVKDEAKPRKIKRVKKRKKR 42
>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200). This
family is found in eukaryotes. It is a coiled-coil
domain of unknwon function.
Length = 126
Score = 30.3 bits (69), Expect = 0.68
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
L+ K K KE + K+++ +KK EEEKK +K+K+++ K+ K L
Sbjct: 43 ELQESLIKFDKFLKENEAKRRRAEKKAEEEKKLRKEKEEEIKELKAEL 90
Score = 27.6 bits (62), Expect = 5.5
Identities = 14/61 (22%), Positives = 36/61 (59%), Gaps = 15/61 (24%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEE---------------EKKKKKKKKKKKKKKKK 51
L K+++ +++++ K+++++ +KK+EE E K+++ +KK +++KK
Sbjct: 16 LDAKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRRRAEKKAEEEKKL 75
Query: 52 R 52
R
Sbjct: 76 R 76
Score = 27.2 bits (61), Expect = 6.4
Identities = 13/46 (28%), Positives = 32/46 (69%), Gaps = 4/46 (8%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK----KKKKKKKKKRL 53
+ K+++ +++ +++KK +K+KEEE K+ K + K + +K +++L
Sbjct: 59 EAKRRRAEKKAEEEKKLRKEKEEEIKELKAELEELKAEIEKLEEKL 104
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 31.4 bits (72), Expect = 0.70
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKK--------KKKEEEKKKKKKKKKKKKKKKKR 52
+ L+ +KKK K EE K +++ K+ EEE + + + K+ +++ +R
Sbjct: 66 LPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIER 125
Query: 53 L--YLPTSIPLSHYFKKAH 69
L + + LS +
Sbjct: 126 LEPWGNFDLDLSLLLGFKY 144
>gnl|CDD|220376 pfam09745, DUF2040, Coiled-coil domain-containing protein 55
(DUF2040). This entry is a conserved domain of
approximately 130 residues of proteins conserved from
fungi to humans. The proteins do contain a coiled-coil
domain, but the function is unknown.
Length = 128
Score = 30.1 bits (68), Expect = 0.72
Identities = 14/52 (26%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKK-----KKKEEEKKKKKKKKKKKKKKKKRL 53
+K K++KK+ K E+K+ +K K + E +K++++ +++K +K+R
Sbjct: 27 IKAAKEEKKQAKLSERKENRKPKYIGSLLEAAERRKREREIAEERKLQKERE 78
Score = 28.9 bits (65), Expect = 1.9
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 3 LEGRLKTKKKK----KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
EG K+K KK+ EE +K ++++K++EE +++ K K
Sbjct: 79 KEGDEFADKEKFVTSAYKKQLEENRKLEEEEKEREELEEENDVTKGKD 126
Score = 27.0 bits (60), Expect = 7.7
Identities = 12/49 (24%), Positives = 30/49 (61%), Gaps = 8/49 (16%)
Query: 8 KTKKKKKKKKKKEEKKK--------KKKKKKKKEEEKKKKKKKKKKKKK 48
K +KK+ K +++E +K + +++K+E E +++K +K+++K
Sbjct: 31 KEEKKQAKLSERKENRKPKYIGSLLEAAERRKREREIAEERKLQKEREK 79
Score = 27.0 bits (60), Expect = 9.4
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 18/63 (28%)
Query: 8 KTKKKKKKKKKKE------------EKKKKKKKKKKKEEEKKKKKKKKK------KKKKK 49
K +K+ +K +E K K++KK+ + ++K+ +K K + ++
Sbjct: 1 KKARKEAQKALEEDPSIYDYDEVYDSIKAAKEEKKQAKLSERKENRKPKYIGSLLEAAER 60
Query: 50 KKR 52
+KR
Sbjct: 61 RKR 63
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association
with pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 29.2 bits (66), Expect = 0.72
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+K ++ ++ + +KKKKKK KKK +E +KK++ +++ K+ K
Sbjct: 30 SKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRRGKEVKP 73
Score = 28.4 bits (64), Expect = 1.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
E+ K ++ + +KKKKKKK KKK K
Sbjct: 25 EQIDASKVRRISQRNRRKKKKKKKLKKKSK 54
Score = 28.0 bits (63), Expect = 1.7
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK 41
+ ++KKKKKKK +KK K+ +KKE+ +++ K+
Sbjct: 37 QRNRRKKKKKKKLKKKSKEWILRKKEQMRRRGKE 70
Score = 28.0 bits (63), Expect = 1.9
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ ++ K ++ ++ KKKKKKK KKK +E +KK++ +++ K+
Sbjct: 24 DEQIDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRRGKE 70
Score = 26.9 bits (60), Expect = 4.3
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 29 KKKKEEEKKKKKKKKKKKKKKKKRLY 54
K ++ ++ ++KKKKKKK KKK + +
Sbjct: 31 KVRRISQRNRRKKKKKKKLKKKSKEW 56
>gnl|CDD|216447 pfam01346, FKBP_N, Domain amino terminal to FKBP-type
peptidyl-prolyl isomerase. This family is only found at
the amino terminus of pfam00254. This domain is of
unknown function.
Length = 124
Score = 29.9 bits (68), Expect = 0.72
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
KK + K++ K +KK ++ K E + KK+
Sbjct: 79 KKLQAKQQAKAEKKAEENKAAGEAFLAENAKKE 111
Score = 28.7 bits (65), Expect = 2.2
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
KK + K++ K +KK ++ K + + KK+
Sbjct: 79 KKLQAKQQAKAEKKAEENKAAGEAFLAENAKKE 111
Score = 27.9 bits (63), Expect = 3.7
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
L+ +KK + K++ + +KK ++ K E + KK+
Sbjct: 74 LQAFQKKLQAKQQAKAEKKAEENKAAGEAFLAENAKKE 111
Score = 26.8 bits (60), Expect = 8.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
KK + K++ K +KK EE K + + KK+
Sbjct: 79 KKLQAKQQAKAEKKAEENKAAGEAFLAENAKKE 111
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 31.3 bits (71), Expect = 0.74
Identities = 11/54 (20%), Positives = 25/54 (46%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
LE +K K+ + EK+ + K+ +++ + + +KK++ K L
Sbjct: 101 KLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERL 154
Score = 29.0 bits (65), Expect = 3.9
Identities = 8/44 (18%), Positives = 20/44 (45%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ + K + E +K K+ + EK+ + K+ +K+ +
Sbjct: 95 LQDEIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNTA 138
Score = 29.0 bits (65), Expect = 4.4
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 2 SLEGRLKTKKKKKKK--KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
LE L K+ +K + E +KK++ K EE K + +KK ++ + +R
Sbjct: 118 LLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREK 172
Score = 27.9 bits (62), Expect = 8.3
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKE---------EEKKKKKKKKKKKKKKKK 51
L+ + +KK++ K EE+ K + +KK +E EE+ + + K+ ++
Sbjct: 133 QLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEE 191
>gnl|CDD|153294 cd07610, FCH_F-BAR, The Extended FES-CIP4 Homology (FCH) or F-BAR
(FCH and Bin/Amphiphysin/Rvs) domain, a dimerization
module that binds and bends membranes. F-BAR domains
are dimerization modules that bind and bend membranes
and are found in proteins involved in membrane dynamics
and actin reorganization. F-BAR domain containing
proteins, also known as Pombe Cdc15 homology (PCH)
family proteins, include Fes and Fer tyrosine kinases,
PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and
srGAPs. Many members also contain an SH3 domain and play
roles in endocytosis. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
These tubules have diameters larger than those observed
with N-BARs. The F-BAR domains of some members such as
NOSTRIN and Rgd1 are important for the subcellular
localization of the protein.
Length = 191
Score = 30.8 bits (70), Expect = 0.75
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
K+ K++ +KKE + +K KKK +E K KK ++ +++ ++L
Sbjct: 92 KEDKEQARKKELAEGEKLKKKLQELWAKLAKKADEEYREQVEKLN 136
Score = 28.8 bits (65), Expect = 2.8
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
LE + K++ +KK+ E +K KKK ++ + KK ++ +++ +K
Sbjct: 88 LEKVKEDKEQARKKELAEGEKLKKKLQELWAKLAKKADEEYREQVEK 134
>gnl|CDD|223596 COG0522, RpsD, Ribosomal protein S4 and related proteins
[Translation, ribosomal structure and biogenesis].
Length = 205
Score = 30.7 bits (70), Expect = 0.75
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
KKK + K++ +E K K + +++ KK
Sbjct: 4 YPGPKKKLSRRLGFNPWLKERLCKERKLPYKPGQHGQERWKKLSDY 49
Score = 28.0 bits (63), Expect = 6.5
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKK-KKKKKKKKKKKRLYLPTSIPLSHY 64
RL K++ KE K K + +E KK + ++K+K + Y Y
Sbjct: 14 RLGFNPWLKERLCKERKLPYKPGQHGQERWKKLSDYGLQLREKQKLRAFYGVLEKQFRRY 73
Query: 65 FKKA 68
K+A
Sbjct: 74 LKEA 77
>gnl|CDD|190741 pfam03763, Remorin_C, Remorin, C-terminal region. Remorins are
plant-specific plasma membrane-associated proteins. In
tobacco remorin co-purifies with lipid rafts. Most
remorins have a variable, proline-rich C-half and a
more conserved N-half that is predicted to form coiled
coils. Consistent with this, circular dichroism studies
have demonstrated that much of the protein is
alpha-helical. Remorins exist in plasma membrane
preparations as oligomeric structures and form
filaments in vitro. The proteins can bind polyanions
including the extracellular matrix component
oligogalacturonic acid (OGA). In vitro, remorin in
plasma membrane preparations is phosphorylated
(principally on threonine residues) in the presence of
OGA and thus co-purifies with a protein kinases(s). The
biological functions of remorins are unknown but roles
as components of the membrane/cytoskeleton are
possible.
Length = 112
Score = 29.6 bits (67), Expect = 0.75
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 11 KKKKKKKKKEEKKKKKK--KKKKKEEEKKKKKKKKKKKKKKKKR 52
KKK K + E KK ++K KKK + EK K K KK ++KR
Sbjct: 37 NKKKAKAEAELKKIERKLEKKKAEAAEKLKNKLAAAHKKAEEKR 80
Score = 26.5 bits (59), Expect = 9.3
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 6 RLKTKKKKKKKKKK------EEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ K K ++++ K ++K K + + KK E + +KKK + +K K K
Sbjct: 18 KAKINNKYQREEAKIQAWENKKKAKAEAELKKIERKLEKKKAEAAEKLKNKLAA 71
>gnl|CDD|234533 TIGR04285, nucleoid_noc, nucleoid occlusion protein. This model
describes nucleoid occlusion protein, a close homolog to
ParB chromosome partitioning proteins including Spo0J in
Bacillus subtilis. Its gene often is located near the
gene for the Spo0J ortholog. This protein bind a
specific DNA sequence and blocks cytokinesis from
happening until chromosome segregation is complete.
Length = 255
Score = 30.9 bits (71), Expect = 0.75
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 28 KKKKKEEEKKKKKKKKKKKKKKKKRLYLPT 57
KK ++ EK KKKKK++K K R+ + T
Sbjct: 192 KKLLEKPEKPKKKKKRRKGFSKDVRIAVNT 221
Score = 30.6 bits (70), Expect = 1.1
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
LK ++ + + E +K K+ EE KK +K +K KKKKKR
Sbjct: 162 LKLPDEELQLEVLNEIIEKGLNVKQTEELIKKLLEKPEKPKKKKKR 207
Score = 29.8 bits (68), Expect = 1.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK 43
L +K K+ E+ KK +K ++ +KKKK++K
Sbjct: 174 LNEIIEKGLNVKQTEELIKKLLEKPEKPKKKKKRRKG 210
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 31.1 bits (71), Expect = 0.76
Identities = 13/49 (26%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+LK +K K +K EEK +++++++ E E++++++ +++KK+K
Sbjct: 3 DKLK-EKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFF 50
>gnl|CDD|219248 pfam06978, POP1, Ribonucleases P/MRP protein subunit POP1. This
family represents a conserved region approximately 150
residues long located towards the N-terminus of the POP1
subunit that is common to both the RNase MRP and RNase P
ribonucleoproteins (EC:3.1.26.5). These RNA-containing
enzymes generate mature tRNA molecules by cleaving their
5' ends.
Length = 158
Score = 30.4 bits (69), Expect = 0.77
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYF--KKAHMVPR 73
K KK K+ + +K +K++K+KK L T H + K+ HM R
Sbjct: 65 PTKLSRKKPSKRLLRLALARPPNLSRKYRKRQKRKKW--LET-----HLWHAKRFHMTKR 117
Query: 74 C 74
Sbjct: 118 W 118
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 29.5 bits (67), Expect = 0.79
Identities = 6/22 (27%), Positives = 18/22 (81%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEE 35
++K+E+++++++K++ EEE
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEE 96
Score = 27.6 bits (62), Expect = 3.3
Identities = 7/22 (31%), Positives = 18/22 (81%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEE 34
++KKEE++++++K++ +EE
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEE 96
>gnl|CDD|223624 COG0550, TopA, Topoisomerase IA [DNA replication, recombination,
and repair].
Length = 570
Score = 31.4 bits (72), Expect = 0.79
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
RL + KK+ + K++ + ++ K K + K +KK KK+ +
Sbjct: 210 SARLTEIEGKKEGRLKDKDEAEEIVNKLKGKPAKVVSVEKKPKKRSPPPPF 260
>gnl|CDD|129141 TIGR00030, S21p, ribosomal protein S21. This model describes
bacterial ribosomal protein S21 and most mitochondrial
and chloroplast equivalents [Protein synthesis,
Ribosomal proteins: synthesis and modification].
Length = 58
Score = 28.4 bits (64), Expect = 0.81
Identities = 11/41 (26%), Positives = 26/41 (63%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
++ K+K EK+ ++ KK+ +K +++++K+K KR+
Sbjct: 16 RRFKRKLEKEGILRELKKRRYYEKPSERRRRKEKAAAKRIR 56
Score = 27.6 bits (62), Expect = 1.3
Identities = 10/41 (24%), Positives = 26/41 (63%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
++ K+K E++ ++ KK++ EK +++++K+K K+
Sbjct: 16 RRFKRKLEKEGILRELKKRRYYEKPSERRRRKEKAAAKRIR 56
Score = 26.8 bits (60), Expect = 2.4
Identities = 14/49 (28%), Positives = 30/49 (61%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
S++ L+ K+K +K+ + KK++ +K E +++K+K K+ +KK
Sbjct: 10 SIDSALRRFKRKLEKEGILRELKKRRYYEKPSERRRRKEKAAAKRIRKK 58
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 30.6 bits (69), Expect = 0.83
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K + +K +EE + KK+ KE K++ ++K+ + +K +
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKEI 48
Score = 29.0 bits (65), Expect = 2.7
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
E L ++ + KKE K+ K++ ++K+ + +K+ K K K L
Sbjct: 9 EKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKEIADLKAKNKDL 58
Score = 29.0 bits (65), Expect = 3.0
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
T + KK+ KE K++ ++K+ E+ +K+ K K K + YL
Sbjct: 17 TTDEAPKKEAKEAPKEEDQEKQNPVEDLEKEIADLKAKNKDLEDKYL 63
>gnl|CDD|197700 smart00398, HMG, high mobility group.
Length = 70
Score = 28.8 bits (65), Expect = 0.83
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K + E KK ++ K E++K ++K KK K++
Sbjct: 21 KAENPDLSNAEISKKLGERWKLLSEEEKAPYEEKAKKDKER 61
Score = 26.9 bits (60), Expect = 3.1
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
R K K + E KK ++ K EE+K ++K KK K++
Sbjct: 17 RAKIKAENPDLSNAEISKKLGERWKLLSEEEKAPYEEKAKKDKER 61
Score = 26.9 bits (60), Expect = 3.8
Identities = 7/38 (18%), Positives = 23/38 (60%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
KK ++ K +++K ++K +++K++ +++ + K
Sbjct: 33 SKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEMPEYK 70
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 29.6 bits (67), Expect = 0.83
Identities = 5/23 (21%), Positives = 19/23 (82%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEE 35
++++EE++++++++++ EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 27.3 bits (61), Expect = 4.6
Identities = 3/21 (14%), Positives = 16/21 (76%)
Query: 20 EEKKKKKKKKKKKEEEKKKKK 40
+++++++++EEE++++
Sbjct: 72 AAAAEEEEEEEEEEEEEEEES 92
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is
presumably controlled by tissue-specific
microtubule-associated proteins (MAPs). The 115-kDa
epithelial MAP (E-MAP-115/MAP7) has been identified as
a microtubule-stabilising protein predominantly
expressed in cell lines of epithelial origin. The
binding of this microtubule associated protein is
nucleotide independent.
Length = 171
Score = 30.4 bits (68), Expect = 0.83
Identities = 11/50 (22%), Positives = 37/50 (74%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
E + + ++++ K++ EE+ +++++ +++EEE+ ++K++K K+K +++
Sbjct: 50 EEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEK 99
Score = 29.7 bits (66), Expect = 1.3
Identities = 11/50 (22%), Positives = 38/50 (76%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
E + +++++ ++K+E+ K+K ++++K+E+E++++ +K+K++ + + R
Sbjct: 71 REEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEARAR 120
Score = 28.5 bits (63), Expect = 3.5
Identities = 10/45 (22%), Positives = 37/45 (82%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
LK + +++ +++EE +++++++ +++EEK K+K ++++K+++++
Sbjct: 60 LKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEE 104
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 31.3 bits (71), Expect = 0.84
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
K + K K KK K E+ KK +K K+
Sbjct: 671 KKLINEAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKE 710
Score = 30.6 bits (69), Expect = 1.5
Identities = 15/53 (28%), Positives = 18/53 (33%), Gaps = 10/53 (18%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKK--KKKEEEKKKKKKK--------KKKKKKK 49
L + K K KK K K K+ EK K+ K KKK
Sbjct: 673 LINEAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKENLEKEIFGDKFTKKK 725
Score = 30.2 bits (68), Expect = 2.1
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K + K + KK K EK KK +K K+
Sbjct: 672 KLINEAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKE 710
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 31.3 bits (71), Expect = 0.84
Identities = 10/47 (21%), Positives = 27/47 (57%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K + ++ K + E + + + K +EEE ++ ++ ++ ++K +RL
Sbjct: 247 EKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERL 293
Score = 31.3 bits (71), Expect = 0.95
Identities = 10/57 (17%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEK-----KKKKKKKKKKKKKKKRLYLPTSI 59
+ +++ ++ +++ E+ KK + ++ E+ + ++ KK+ +K +K L L +
Sbjct: 692 QLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEEL 748
Score = 31.3 bits (71), Expect = 1.00
Identities = 8/48 (16%), Positives = 30/48 (62%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
LK + + +E +++ ++ +K+ EE +++ ++ +++ KK ++++
Sbjct: 393 ELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQI 440
Score = 28.6 bits (64), Expect = 5.8
Identities = 10/47 (21%), Positives = 24/47 (51%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
LK K+ K K +E + + + + E+ + +++ K+ KK ++
Sbjct: 175 LLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEI 221
>gnl|CDD|217443 pfam03234, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain
pfam08565. Expression of a construct consisting of only
the N-terminal domain of Saccharomyces pombe Cdc37
results in cellular viability. This indicates that
interactions with the cochaperone Hsp90 may not be
essential for Cdc37 function.
Length = 172
Score = 30.5 bits (69), Expect = 0.87
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
L ++K + +K E+ +K + K KKE+++ KK + +K++KKK
Sbjct: 109 EDLFDQVKDEVDEKNGAALIEELQKHRDKLKKEQKELLKKLDELEKEEKKK 159
>gnl|CDD|236278 PRK08506, PRK08506, replicative DNA helicase; Provisional.
Length = 472
Score = 31.1 bits (71), Expect = 0.88
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKK 43
K++EEK+K+KK KK+ +EE++ + K
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNK 417
Score = 30.4 bits (69), Expect = 1.6
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEK 36
+ + +K+K+KK KKE K++++ + K E+
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNKSIEE 421
>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase
component YidC; Provisional.
Length = 304
Score = 30.8 bits (70), Expect = 0.92
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K KEE+ KK+ K +++ K K K+ KKK
Sbjct: 268 GKIDKEEEAKKQAKAERRAANAPKPGAKPKRSKKKAP 304
Score = 30.4 bits (69), Expect = 1.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K K+EE KK+ K +++ K K K+ KKK
Sbjct: 268 GKIDKEEEAKKQAKAERRAANAPKPGAKPKRSKKKAP 304
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain. DBINO is a DNA-binding
domain found on global transcription activator SNF2L1
proteins and chromatin re-modelling proteins.
Length = 140
Score = 29.9 bits (68), Expect = 0.93
Identities = 18/54 (33%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPL-SHYFKK 67
KK +KEE++ +K+ +K+ E+ KK+++ ++ K++++K +L T L SH+ K
Sbjct: 79 KKNEKEERELRKRAEKEALEQAKKEEELREAKRQQRKLNFLITQTELYSHFMGK 132
>gnl|CDD|236078 PRK07726, PRK07726, DNA topoisomerase III; Provisional.
Length = 658
Score = 31.3 bits (72), Expect = 0.93
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 8/51 (15%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKK--------KKKKEEEKKKKKKKKKKKKKK 49
L K K + K K K K++ KK + KKK
Sbjct: 608 LTGPKCPDCGKPMLKVKGKNGKMLVCQDRECGKRKNVSKKTNARCPNCKKK 658
Score = 29.0 bits (66), Expect = 4.4
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K K K K + ++ + + KK + KKK
Sbjct: 615 DCGKPMLKVKGKNGKMLVCQDRECGKRKNVSKKTNARCPNCKKK 658
>gnl|CDD|221012 pfam11169, DUF2956, Protein of unknown function (DUF2956). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 103
Score = 29.2 bits (66), Expect = 0.94
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 24 KKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHY 64
KK++K K +E +K +K++ K K+++ T ++
Sbjct: 40 KKQQKAKAREADKARKQQLKAKQRQAANDDEEDTIESVTQS 80
Score = 27.3 bits (61), Expect = 5.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKE 33
KK++K K +E K +K++ K K+
Sbjct: 40 KKQQKAKAREADKARKQQLKAKQ 62
>gnl|CDD|217011 pfam02388, FemAB, FemAB family. The femAB operon codes for two
nearly identical approximately 50-kDa proteins involved
in the formation of the Staphylococcal pentaglycine
interpeptide bridge in peptidoglycan. These proteins are
also considered as a factor influencing the level of
methicillin resistance.
Length = 408
Score = 31.1 bits (71), Expect = 0.97
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 2 SLEGRLKTKKKKKKK--KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSI 59
L+ +L+ +K K +K E+ KKK K E E++ +K+ + K+ +
Sbjct: 246 ELQEKLEKLEKDLAKLEEKLEKNPNSKKKNKLAELEQQLASLEKRIDEAKELIAKYGNEV 305
Query: 60 PLS 62
PL+
Sbjct: 306 PLA 308
>gnl|CDD|241400 cd13246, PH_Scd1, Shape and Conjugation Deficiency 1 Pleckstrin
homology (PH) domain. Fission yeast Scd1 is an
exchange factor for Cdc42 and an effector of Ras1, the
homolog of the human H-Ras. Scd2/Bem1 mediates Cdc42
activation by binding to Scd1/Cdc24 and to Cdc42. Ras1
regulates Scd1/Cdc24/Ral1, which is a putative guanine
nucleotide exchange factor for Cdc42, a member of the
Rho family of Ras-like proteins. Cdc42 then activates
the Shk1/Orb2 protein kinase. Scd1 interacts with Klp5
and Klp6 kinesins to mediate cytokinesis. PH domains
have diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They
share little sequence conservation, but all have a
common fold, which is electrostatically polarized. Less
than 10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved
across all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 148
Score = 29.9 bits (68), Expect = 0.97
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
KE KKKKKK K + KKKKKK + K R+++
Sbjct: 61 KEVKKKKKKSSLKSKSSSSSKKKKKKGPLQLKGRIFI 97
>gnl|CDD|216470 pfam01385, OrfB_IS605, Probable transposase. This family includes
IS891, IS1136 and IS1341. DUF1225, pfam06774, has now
been merged into this family.
Length = 226
Score = 30.3 bits (69), Expect = 0.98
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 22 KKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
+ K+ + K K ++K +K RL+
Sbjct: 155 SINQYLNKEIARLQSKLKGSNRRKTSRKLARLHR 188
>gnl|CDD|220417 pfam09812, MRP-L28, Mitochondrial ribosomal protein L28. Members
of this family are components of the mitochondrial
large ribosomal subunit. Mature mitochondrial ribosomes
consist of a small (37S) and a large (54S) subunit. The
37S subunit contains at least 33 different proteins and
1 molecule of RNA (15S). The 54S subunit contains at
least 45 different proteins and 1 molecule of RNA
(21S).
Length = 146
Score = 30.1 bits (68), Expect = 0.98
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 23 KKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KKKKK ++E+ K+K+ +K +K+ K R
Sbjct: 7 KKKKKVDPQREQRKRKRLEKFIRKRTKSAR 36
Score = 28.1 bits (63), Expect = 4.3
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 22 KKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
KKKKK ++++ ++K+ +K +K+ K + L
Sbjct: 7 KKKKKVDPQREQRKRKRLEKFIRKRTKSARGL 38
Score = 27.7 bits (62), Expect = 5.4
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKK----------KKKKKKKKKKKRLYLPTS 58
KKKKK ++E++K+K+ +K ++ K + + + K+++R L S
Sbjct: 7 KKKKKVDPQREQRKRKRLEKFIRKRTKSARGLKPVEDRIVPQLSVDEAKRRQRKLLKLS 65
>gnl|CDD|217334 pfam03041, Baculo_LEF-2, lef-2. The lef-2 gene (for late
expression factor 2) from baculovirus is required for
expression of late genes. This gene has been shown to be
specifically required for expression from the vp39 and
polh promoters. LEF-1 is a DNA primase and there is some
evidence to suggest that LEF-2 may bind to both DNA and
LEF-1.
Length = 164
Score = 30.0 bits (68), Expect = 0.99
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYF 65
RL K ++ KK K+ K +K K +K L P I +
Sbjct: 51 RLYNLLKNPPTFEESPSVNFSKKSKRNVCFKDCSGGRKSVIDKLRKLLNPPPCI--TKAL 108
Query: 66 KKAHMVPRCNAMRQ 79
+ PR R+
Sbjct: 109 NDLCVRPRGGRYRK 122
>gnl|CDD|181784 PRK09334, PRK09334, 30S ribosomal protein S25e; Provisional.
Length = 86
Score = 28.8 bits (65), Expect = 1.0
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
+ KKKKKK+ K EK+ K EE K+ K+ KK+K
Sbjct: 1 QQKKKKKKEGSKTEKEIKSTIITLDEELLKRVAKEVKKEK 40
Score = 27.7 bits (62), Expect = 3.0
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
++KKKKKKE K +K+ K ++ K+ K+ KK+K
Sbjct: 1 QQKKKKKKEGSKTEKEIKSTIITLDEELLKRVAKEVKKEK 40
Score = 26.5 bits (59), Expect = 6.1
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLP 56
++KKKKK+E K +K+ K ++ K+ K+ KK+++ P
Sbjct: 1 QQKKKKKKEGSKTEKEIKSTIITLDEELLKRVAKEVKKEKIVTP 44
>gnl|CDD|218550 pfam05311, Baculo_PP31, Baculovirus 33KDa late protein (PP31).
Autographa californica nuclear polyhedrosis virus
(AcMNPV) pp31 is a nuclear phosphoprotein that
accumulates in the virogenic stroma, which is the viral
replication centre in the infected-cell nucleus, binds
to DNA, and serves as a late expression factor.
Length = 267
Score = 30.4 bits (69), Expect = 1.1
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 24 KKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+K+K ++ KK KK+K+K+
Sbjct: 221 SSPSRKRKAPKKVAKKVAAAKKRKQKRSP 249
Score = 29.7 bits (67), Expect = 2.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+ +K+K K+ KK KK+K+K+
Sbjct: 219 QSSSPSRKRKAPKKVAKKVAAAKKRKQKRS 248
Score = 29.3 bits (66), Expect = 2.6
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 23 KKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+K+K ++ KK KK+K+K+
Sbjct: 221 SSPSRKRKAPKKVAKKVAAAKKRKQKRS 248
Score = 28.5 bits (64), Expect = 5.1
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEE 34
++K+K KK ++ KK+K+K+
Sbjct: 223 PSRKRKAPKKVAKKVAAAKKRKQKRSP 249
>gnl|CDD|237034 PRK12278, PRK12278, 50S ribosomal protein L21/unknown domain fusion
protein; Provisional.
Length = 221
Score = 30.2 bits (68), Expect = 1.1
Identities = 8/49 (16%), Positives = 11/49 (22%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
G + K K E + K K+E K
Sbjct: 103 ASGADASGVKAATGAGKVEVAAEAAPAKAKKEAAPKAAPAPAAAAAPPA 151
Score = 28.7 bits (64), Expect = 4.0
Identities = 8/44 (18%), Positives = 9/44 (20%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K E + K KKE K
Sbjct: 109 SGVKAATGAGKVEVAAEAAPAKAKKEAAPKAAPAPAAAAAPPAA 152
>gnl|CDD|149741 pfam08775, ParB, ParB family. ParB is a component of the par
system which mediates accurate DNA partition during cell
division. It recognises A-box and B-box DNA motifs. ParB
forms an asymmetric dimer with 2 extended
helix-turn-helix (HTH) motifs that bind to A-boxes. The
HTH motifs emanate from a beta sheet coiled coil DNA
binding module. Both DNA binding elements are free to
rotate around a flexible linker, this enables them to
bind to complex arrays of A- and B-box elements on
adjacent DNA arms of the looped partition site.
Length = 127
Score = 29.6 bits (67), Expect = 1.1
Identities = 12/45 (26%), Positives = 17/45 (37%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K K+ K ++K K K E K K +K+ K R
Sbjct: 57 MKLITKELKLLKDKPVKDKAVVTPLAEFDDKDKFARKRVDPKGRK 101
>gnl|CDD|223839 COG0768, FtsI, Cell division protein FtsI/penicillin-binding
protein 2 [Cell envelope biogenesis, outer membrane].
Length = 599
Score = 30.8 bits (70), Expect = 1.1
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLP 56
+K + E K + K + K+ K+ K K RL+ P
Sbjct: 89 RKITDEPLEATKDELAAKLLALLEDLDKRALLKELKSKSRLFTP 132
Score = 30.1 bits (68), Expect = 2.0
Identities = 8/47 (17%), Positives = 15/47 (31%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
R T + + K + K + + K+ K K + R
Sbjct: 89 RKITDEPLEATKDELAAKLLALLEDLDKRALLKELKSKSRLFTPLAR 135
Score = 28.5 bits (64), Expect = 5.2
Identities = 10/54 (18%), Positives = 19/54 (35%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLS 62
+K + + K + K E+ K+ K+ K K + L L+
Sbjct: 87 DPRKITDEPLEATKDELAAKLLALLEDLDKRALLKELKSKSRLFTPLARKTNLT 140
Score = 28.5 bits (64), Expect = 6.8
Identities = 6/45 (13%), Positives = 16/45 (35%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ + + K+E K + +++ K+ K K +
Sbjct: 88 PRKITDEPLEATKDELAAKLLALLEDLDKRALLKELKSKSRLFTP 132
Score = 28.1 bits (63), Expect = 7.8
Identities = 7/46 (15%), Positives = 14/46 (30%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K + + K E K + ++ K+ K K +
Sbjct: 90 KITDEPLEATKDELAAKLLALLEDLDKRALLKELKSKSRLFTPLAR 135
>gnl|CDD|220839 pfam10661, EssA, WXG100 protein secretion system (Wss), protein
EssA. The WXG100 protein secretion system (Wss) is
responsible for the secretion of WXG100 proteins
(pfam06013) such as ESAT-6 and CFP-10 in Mycobacterium
tuberculosis or EsxA and EsxB in Staphylococcus aureus.
In S. aureus, the Wss seems to be encoded by a locus of
eight CDS, called ess (eSAT-6 secretion system). This
locus encodes, amongst several other proteins, EssA, a
protein predicted to possess one transmembrane domain.
Due to its predicted membrane location and its absolute
requirement for WXG100 protein secretion, it has been
speculated that EssA could form a secretion apparatus
in conjunction with the polytopic membrane protein
EsaA, YukC (pfam10140) and YukAB, which is a
membrane-bound ATPase containing Ftsk/SpoIIIE domains
(pfam01580) called EssC in S. aureus and Snm1/Snm2 in
Mycobacterium tuberculosis. Proteins homologous to
EssA, YukC, EsaA and YukD seem absent from
mycobacteria.
Length = 145
Score = 29.8 bits (67), Expect = 1.1
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
KT ++K +KK +E + K + E +++ KKK ++K+ + +
Sbjct: 24 KTDQEKNEKKLRETELDKLGIELFTTETEEEINKKKNAEQKEMEDI 69
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 31.0 bits (70), Expect = 1.1
Identities = 10/36 (27%), Positives = 27/36 (75%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
++ ++K ++E++++K++ K K E E+K K++ K++
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQR 41
>gnl|CDD|234298 TIGR03659, IsdE, heme ABC transporter, heme-binding protein isdE.
This family of ABC substrate-binding proteins is
observed primarily in close proximity with proteins
localized to the cell wall and bearing the NEAT (NEAr
Transporter, pfam05031) heme-binding domain. IsdE has
been shown to bind heme and is involved in the process
of scavenging heme for the purpose of obtaining iron.
Length = 289
Score = 30.7 bits (70), Expect = 1.1
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
S++G K+ + +K +EE+ +K K+ ++E + KKK K KKK K
Sbjct: 123 SVDGMKKSITELGEKYGREEQAEKLVKEINEKEAEVKKKVKGKKKPK 169
>gnl|CDD|129163 TIGR00053, TIGR00053, addiction module toxin component, YafQ
family. This model represents a cluster of eubacterial
proteins and a cluster of archaeal proteins, all of
which are uncharacterized, from 85 to 102 residues in
length, and similar in sequence. These include YafQ, a
ribosome-associated endoribonuclease that serves as
part of a toxin-antitoxin system, for which DinJ is the
antidote component [Cellular processes, Adaptations to
atypical conditions].
Length = 89
Score = 28.6 bits (64), Expect = 1.2
Identities = 18/73 (24%), Positives = 33/73 (45%)
Query: 27 KKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKKAHMVPRCNAMRQIYEHGPL 86
K+ K+ +K K+ K KK KK L +PL ++K + R+ + L
Sbjct: 7 SKQFDKDLKKLVKRNGKDLKKLYKKMEELINELPLPEHYKDHPLRGGWKGFRRCHIKPDL 66
Query: 87 VAIFSVYADFLQY 99
V ++ V + L++
Sbjct: 67 VLVYKVKENTLKF 79
>gnl|CDD|116948 pfam08367, M16C_assoc, Peptidase M16C associated. This domain
appears in eukaryotes as well as bacteria and tends to
be found near the C-terminus of the metalloprotease
M16C (pfam05193).
Length = 248
Score = 30.3 bits (69), Expect = 1.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKK 38
+K ++E +K +KKK EE+K+K
Sbjct: 9 EKLNEEEREKLEKKKSSLSEEDKEK 33
Score = 29.5 bits (67), Expect = 2.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKK 39
+K +EE++K +KKK EE K+K
Sbjct: 9 EKLNEEEREKLEKKKSSLSEEDKEK 33
Score = 28.0 bits (63), Expect = 6.2
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 28 KKKKKEEEKKKKKKKKKKKKKKKKRLY 54
+K +EE +K +KKK ++ K+++
Sbjct: 9 EKLNEEEREKLEKKKSSLSEEDKEKII 35
>gnl|CDD|214998 smart01054, CaM_binding, Plant calmodulin-binding domain. The
sequences featured in this family are found repeated in
a number of plant calmodulin-binding proteins, and are
thought to constitute the calmodulin-binding domains..
Binding of the proteins to calmodulin depends on the
presence of calcium ions.. These proteins are thought
to be involved in various processes, such as plant
defence responses.and stolonisation or tuberization.
Length = 115
Score = 29.3 bits (66), Expect = 1.2
Identities = 12/57 (21%), Positives = 25/57 (43%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTS 58
+ + + K + K + E +K K KK ++ K + K++ ++ LPT
Sbjct: 2 AEKKEFRRGKIEDPKPEGERPRKWKFLKKVILLKRFVKSLEDKRRLNPREPNVLPTE 58
>gnl|CDD|216298 pfam01101, HMG14_17, HMG14 and HMG17.
Length = 93
Score = 29.0 bits (65), Expect = 1.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKK 39
K KK KKKK K KK K KK+ ++++ K
Sbjct: 36 PKPKKAAAKKKKPAVKGKKGAKGKKETKQEEAK 68
Score = 27.9 bits (62), Expect = 2.3
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K E K KK KKKK K KK K KK+ K
Sbjct: 33 KPEPKPKKAAAKKKKPAVKGKKGAKGKKETK 63
Score = 27.1 bits (60), Expect = 5.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKK 40
KK KKKK K KK K KKE ++++ K
Sbjct: 39 KKAAAKKKKPAVKGKKGAKGKKETKQEEAK 68
Score = 26.3 bits (58), Expect = 8.0
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K E K KK KKK+ K KK K KK+ K
Sbjct: 33 KPEPKPKKAAAKKKKPAVKGKKGAKGKKETK 63
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 30.4 bits (69), Expect = 1.2
Identities = 9/51 (17%), Positives = 36/51 (70%), Gaps = 5/51 (9%)
Query: 7 LKTKKKKKKKKKKEEKKK-----KKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
L+ ++++ ++++ E + + ++++++E+E++KK+ K++K+++K+
Sbjct: 157 LRQQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQREKETA 207
Score = 30.4 bits (69), Expect = 1.2
Identities = 7/30 (23%), Positives = 27/30 (90%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
+ E++++++K+++K+++K++K+++K+ +K
Sbjct: 180 EAERRRREEKERRKKQDKERKQREKETAEK 209
Score = 29.6 bits (67), Expect = 2.0
Identities = 8/44 (18%), Positives = 32/44 (72%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
+ R + ++ ++ E +++++K+++KK+++++K+++K+ +K
Sbjct: 166 QRRNAELAETQRLEEAERRRREEKERRKKQDKERKQREKETAEK 209
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 30.8 bits (70), Expect = 1.2
Identities = 10/43 (23%), Positives = 28/43 (65%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K ++K+K+ ++ E+ +++K+ + E+ +KK + +K+ +K
Sbjct: 325 KIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEK 367
Score = 29.2 bits (66), Expect = 3.0
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
E + KKK +K +++EK+ ++ ++ EE K+ K ++ +KK +
Sbjct: 313 EEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEK 363
>gnl|CDD|227577 COG5252, COG5252, Uncharacterized conserved protein, contains
CCCH-type Zn-finger protein [General function
prediction only].
Length = 299
Score = 30.4 bits (68), Expect = 1.2
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
KK KK++E KK + +K+ E+K K K + K + +
Sbjct: 1 MPPKKMAKKQQESGKKATRDMRKELEDKTFGLKNKNRSTKVQAII 45
>gnl|CDD|225651 COG3109, ProQ, Activator of osmoprotectant transporter ProP [Signal
transduction mechanisms].
Length = 208
Score = 30.2 bits (68), Expect = 1.3
Identities = 8/43 (18%), Positives = 22/43 (51%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
R++ ++ +++ KK+EE +K + + K K +++
Sbjct: 109 RVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREE 151
Score = 29.4 bits (66), Expect = 1.8
Identities = 10/55 (18%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKK---KKEEEKKKKKKKKKKKKKKKKRLYLPTS 58
L K + + ++ E++ KK+++ +K ++ + K K ++ ++ P S
Sbjct: 103 LAEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREEVHTPVS 157
Score = 27.5 bits (61), Expect = 9.3
Identities = 8/43 (18%), Positives = 22/43 (51%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+K+ + K + + ++ +++ KK+EE +K ++ R
Sbjct: 100 RKQLAEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAAR 142
>gnl|CDD|193409 pfam12936, Kri1_C, KRI1-like family C-terminal. The yeast member
of this family (Kri1p) is found to be required for 40S
ribosome biogenesis in the nucleolus. This is the
C-terminal domain of the family.
Length = 93
Score = 28.7 bits (65), Expect = 1.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKK 43
KEE++K KKK KK ++ KKK
Sbjct: 69 KEERRKDKKKYGKKARLREWKKKVF 93
Score = 28.3 bits (64), Expect = 1.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKK 41
K++ K KKK KK + E KKK
Sbjct: 69 KEERRKDKKKYGKKARLREWKKKVF 93
Score = 27.9 bits (63), Expect = 2.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKK 32
K++++K KKK KK + ++ KKK
Sbjct: 68 DKEERRKDKKKYGKKARLREWKKK 91
Score = 26.8 bits (60), Expect = 6.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKK 42
K+E +K KKK KK + KKK
Sbjct: 69 KEERRKDKKKYGKKARLREWKKKVF 93
Score = 26.4 bits (59), Expect = 8.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 32 KEEEKKKKKKKKKKKKKKKKR 52
KEE +K KKK KK + ++ +
Sbjct: 69 KEERRKDKKKYGKKARLREWK 89
>gnl|CDD|220654 pfam10254, Pacs-1, PACS-1 cytosolic sorting protein. PACS-1 is a
cytosolic sorting protein that directs the localisation
of membrane proteins in the trans-Golgi network
(TGN)/endosomal system. PACS-1 connects the clathrin
adaptor AP-1 to acidic cluster sorting motifs contained
in the cytoplasmic domain of cargo proteins such as
furin, the cation-independent mannose-6-phosphate
receptor and in viral proteins such as human
immunodeficiency virus type 1 Nef.
Length = 413
Score = 30.6 bits (69), Expect = 1.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKK 37
K+K KK KK K+KE E K
Sbjct: 331 TKEKNKKVPVMFLGKKPKEKEVESK 355
Score = 28.2 bits (63), Expect = 6.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEK 36
K+K KK KK K+K+ E K
Sbjct: 331 TKEKNKKVPVMFLGKKPKEKEVESK 355
>gnl|CDD|187855 cd09724, CsaX_III-U, CRISPR/Cas system-associated protein CsaX.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
No prediction.
Length = 296
Score = 30.3 bits (68), Expect = 1.3
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKK----KKKKKKKKKKKKKRLYLPTSIPLSHYFKKAHMV 71
+ EE KK+ +K KK E + KK +K K PT P+S K ++
Sbjct: 20 QGFEEDNKKRIEKTKKIEGILRIIPLSGNDKKPFEKALKCFNFPTQDPISEVLKNFNID 78
>gnl|CDD|221244 pfam11818, DUF3340, C-terminal domain of tail specific protease
(DUF3340). This presumed domain is found at the
C-terminus of tail specific proteases. Its function is
unknown. This family is found in bacteria and
eukaryotes. This presumed domain is typically between 88
to 187 amino acids in length.
Length = 139
Score = 29.5 bits (67), Expect = 1.3
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 6 RLKTKKKKK-----KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
LK ++ K + ++K E+++ +KK+ K+E E++K ++ K
Sbjct: 63 WLKEERDDKTVSLNEAERKAEREEDEKKRLKRENERRKALGEEPLKSLD 111
>gnl|CDD|234874 PRK00955, PRK00955, hypothetical protein; Provisional.
Length = 620
Score = 30.7 bits (70), Expect = 1.3
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
L G KK KK+ KK KK+KKK+KK
Sbjct: 577 EDLIGNGPKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
Score = 30.3 bits (69), Expect = 1.7
Identities = 16/46 (34%), Positives = 19/46 (41%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
GR K +K KKK KK KK+KKK+KK
Sbjct: 575 GREDLIGNGPKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
Score = 29.1 bits (66), Expect = 3.6
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K KK KKK KK KK+KKK+KK
Sbjct: 584 PKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 30.4 bits (68), Expect = 1.4
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
T+K+ + +++ KK + ++ K EE K+ + KKKK KK K +
Sbjct: 211 TEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEV 255
Score = 30.0 bits (67), Expect = 1.9
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
E + + ++ KK E+ ++ K ++ K+ +E KKKK KK K+ K+
Sbjct: 212 EKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKE 258
Score = 28.5 bits (63), Expect = 6.8
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
T + ++ KK +E ++ K ++ KE ++ KKKK KK K+ K+
Sbjct: 216 TDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKE 258
Score = 28.1 bits (62), Expect = 8.4
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
KT +K+ + +E+ KK + ++ + E+ K+ + KKKK KK
Sbjct: 209 KTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKK 251
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 30.3 bits (69), Expect = 1.4
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ ++ + KE + K+ + EE + K+ K+K K+ + L
Sbjct: 49 QAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAAL 91
Score = 29.1 bits (66), Expect = 3.7
Identities = 10/49 (20%), Positives = 27/49 (55%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+L + ++ + ++ E K+ + K+ E++ ++ + K+ K+K K L
Sbjct: 39 RKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKEL 87
Score = 29.1 bits (66), Expect = 4.1
Identities = 6/47 (12%), Positives = 21/47 (44%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLP 56
+ K+ + E+ + K+ K++ ++ + + + + L +P
Sbjct: 60 GRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIP 106
Score = 28.7 bits (65), Expect = 5.4
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK 42
GR + + ++ E K+ K+K K+ E + + +
Sbjct: 60 GRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAE 97
Score = 28.3 bits (64), Expect = 6.0
Identities = 9/47 (19%), Positives = 22/47 (46%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
L+ ++ + K+ K+ + ++ E K+ K+K K+ + L
Sbjct: 48 LQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDEL 94
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 29.6 bits (67), Expect = 1.5
Identities = 10/52 (19%), Positives = 31/52 (59%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
M LE +K ++ +++ +E ++ +++ +K +EE K++ ++ ++ +K
Sbjct: 2 MELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAE 53
>gnl|CDD|204032 pfam08703, PLC-beta_C, PLC-beta C terminal. This domain
corresponds to the alpha helical C terminal domain of
phospholipase C beta.
Length = 181
Score = 29.8 bits (67), Expect = 1.5
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
LK K+ +K+KKE KKK +K+ ++ +E K K+K ++++K
Sbjct: 54 LKKLKEISEKEKKELKKKLDRKRLERIQEAKTKEKHAQEREKT 96
Score = 29.0 bits (65), Expect = 2.7
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSH 63
KK KE +K+KK+ KKK + K+ ++ ++ K K+K + T I SH
Sbjct: 55 KKLKEISEKEKKELKKKLDRKRLERIQEAKTKEKHAQEREKTEINRSH 102
Score = 27.5 bits (61), Expect = 9.3
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK K+ +KE+K+ KKK +K+ E ++ K K+K ++++K
Sbjct: 55 KKLKEISEKEKKELKKKLDRKRLERIQEAKTKEKHAQEREKT 96
>gnl|CDD|219783 pfam08297, U3_snoRNA_assoc, U3 snoRNA associated. This family of
proteins is associated with U3 snoRNA. U3 snoRNA is
required for nucleolar processing of pre-18S ribosomal
RNA.
Length = 87
Score = 28.5 bits (64), Expect = 1.5
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKKKKKKK 46
EE KK+KKK K + +K +K+ K KK
Sbjct: 26 EELKKQKKKNKLRFLKKLEKRPKDVKK 52
Score = 27.4 bits (61), Expect = 3.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKK 45
+E KK+KKK K + ++ +K+ K KK
Sbjct: 26 EELKKQKKKNKLRFLKKLEKRPKDVKK 52
Score = 27.4 bits (61), Expect = 3.8
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKK--------KEEEKKKKKKKKKKKKKKKKRL 53
S E LK +KKK K + ++ +K+ K KK + +K K +KK K
Sbjct: 23 SYEEELKKQKKKNKLRFLKKLEKRPKDVKKGPVTVRVLSDNNSRKLPPKAEKKIVNSKDK 82
Query: 54 YL 55
+L
Sbjct: 83 WL 84
Score = 26.6 bits (59), Expect = 5.7
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
+ EE+ KK+KKK K KK +K+ K KK
Sbjct: 21 PESYEEELKKQKKKNKLRFLKKLEKRPKDVKK 52
Score = 26.2 bits (58), Expect = 7.4
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK 43
E R T + +++ +++KKK K + K+ EK+ K KK
Sbjct: 13 EDRPPTPPPESYEEELKKQKKKNKLRFLKKLEKRPKDVKK 52
Score = 26.2 bits (58), Expect = 8.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
+ + + E++ KK+KKK K KK +K+ K KK
Sbjct: 11 IDEDRPPTPPPESYEEELKKQKKKNKLRFLKKLEKRPKDVKK 52
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain.
This family represents the C-terminus (approximately
300 residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 30.3 bits (68), Expect = 1.5
Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 3 LEGRLKTK-KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+E RLK +KK + +E++++ K+K EEE K+K +++K++ K
Sbjct: 33 MEPRLKPVFTRKKDRITIQEREREAAKEKALEEEAKRKAEERKRETLK 80
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 30.4 bits (68), Expect = 1.6
Identities = 16/52 (30%), Positives = 39/52 (75%), Gaps = 4/52 (7%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK----KKKKKKKKKKRL 53
+LK K+++ + +E KKK+++++K EEE++++K+ +K +++++K+RL
Sbjct: 204 KLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRL 255
>gnl|CDD|148820 pfam07432, Hc1, Histone H1-like protein Hc1. This family
consists of several bacterial histone H1-like Hc1
proteins. In Chlamydia, Hc1 is expressed in the late
stages of the life cycle, concomitant with the
reorganisation of chlamydial reticulate bodies into
elementary bodies. This suggests that Hc1 protein plays
a role in the condensation of chromatin during
intracellular differentiation.
Length = 123
Score = 28.9 bits (64), Expect = 1.6
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+K +K KKK +K K K KK + KK KK K
Sbjct: 53 IKAEKSGLMKKKPAKKAPKAAKAPKKAAKAPAKKAAAAPAKKAK 96
Score = 28.9 bits (64), Expect = 1.7
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+K KKK KK K K K+ K KK KK K
Sbjct: 56 EKSGLMKKKPAKKAPKAAKAPKKAAKAPAKKAAAAPAKKAK 96
Score = 28.2 bits (62), Expect = 3.2
Identities = 16/50 (32%), Positives = 20/50 (40%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
S++ KKK KK + K KK K +K KK K K K
Sbjct: 52 SIKAEKSGLMKKKPAKKAPKAAKAPKKAAKAPAKKAAAAPAKKAKAVKAK 101
Score = 27.8 bits (61), Expect = 4.8
Identities = 17/45 (37%), Positives = 19/45 (42%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K+ KKK KK K K KK K KK KK K K +
Sbjct: 57 KSGLMKKKPAKKAPKAAKAPKKAAKAPAKKAAAAPAKKAKAVKAK 101
Score = 27.4 bits (60), Expect = 5.2
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K K +K+ K EK KKK K+ K K KK K KK
Sbjct: 43 KIAKLYRKESIKAEKSGLMKKKPAKKAPKAAKAPKKAAKAPAKK 86
Score = 27.4 bits (60), Expect = 5.3
Identities = 16/48 (33%), Positives = 18/48 (37%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E KKK KK K K KK K ++ KK K K K
Sbjct: 56 EKSGLMKKKPAKKAPKAAKAPKKAAKAPAKKAAAAPAKKAKAVKAKPA 103
Score = 27.0 bits (59), Expect = 8.3
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
LE K +K+ K +K KKK KK + K KK K KK
Sbjct: 41 LEKIAKLYRKESIKAEKSGLMKKKPAKKAPKAAKAPKKAAKAPAKKAA 88
>gnl|CDD|227891 COG5604, COG5604, Uncharacterized conserved protein [Function
unknown].
Length = 523
Score = 30.2 bits (68), Expect = 1.7
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Query: 9 TKKKKKKK-KKKEEKKKKKKKKKKKEEEKKKKKKKKKK------KKKKKKRLYLP 56
TKK K K +++K+ + KK K + + K K K
Sbjct: 8 TKKFTKNHLKNTIDRRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKEKLSK 62
Score = 29.5 bits (66), Expect = 2.9
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
LK ++K+ + +K K + E K + K K+K
Sbjct: 16 LKNTIDRRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKEK 59
>gnl|CDD|219761 pfam08243, SPT2, SPT2 chromatin protein. This family includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 116
Score = 28.7 bits (64), Expect = 1.7
Identities = 10/34 (29%), Positives = 23/34 (67%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K+E + + + + + E ++++++K+KKKKK K
Sbjct: 83 KEERRSARMARLEDERELAREEEEEKRKKKKKNK 116
Score = 27.9 bits (62), Expect = 3.3
Identities = 11/34 (32%), Positives = 24/34 (70%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KEE++ + + + E E ++++++K+KKKKK +
Sbjct: 83 KEERRSARMARLEDERELAREEEEEKRKKKKKNK 116
>gnl|CDD|206307 pfam14138, COX16, Cytochrome c oxidase assembly protein COX16.
This family represents homologues of COX16 which has
been shown to be involved in assembly of cytochrome
oxidase. Protein in this family are typically between
106 and 134 amino acids in length.
Length = 79
Score = 27.9 bits (63), Expect = 1.7
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 11 KKKKKKKKKEEKKKKKKKKKK--KEEEKKKKKKK 42
+K ++ ++EE K KK++K EEE + +
Sbjct: 30 DRKVQQLEEEEALKLLKKRRKVDLEEEYYRLQGL 63
>gnl|CDD|240377 PTZ00352, PTZ00352, 60S ribosomal protein L13; Provisional.
Length = 212
Score = 29.7 bits (67), Expect = 1.7
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 9 TKKKKKKKKKKEEKKK---KKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K++K + KEE+ + ++ K + KK+KKK+ K+KKK
Sbjct: 167 PKREKARVITKEERAFNAYRTLRQAKLNAKFVGKKEKKKQAKEKKK 212
Score = 28.1 bits (63), Expect = 4.8
Identities = 11/45 (24%), Positives = 24/45 (53%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+T K++K + +E++ + ++ + K KK+KKK+ K
Sbjct: 165 RTPKREKARVITKEERAFNAYRTLRQAKLNAKFVGKKEKKKQAKE 209
Score = 27.8 bits (62), Expect = 7.2
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
+ R+ TK+++ + ++ K K ++EKKK+ K+KKK
Sbjct: 171 KARVITKEERAFNAYRTLRQAKLNAKFVGKKEKKKQAKEKKK 212
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 30.2 bits (69), Expect = 1.7
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
L K+ +K KE + K EEE+ +K++ K++ +++ K
Sbjct: 13 LGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKA 58
Score = 30.2 bits (69), Expect = 2.0
Identities = 10/46 (21%), Positives = 25/46 (54%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
L + K +EE+ +K++ K++ EEE K + ++ + +++
Sbjct: 27 LGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEA 72
Score = 28.3 bits (64), Expect = 7.3
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKK---KKKKK-----EEEKKKKKKKKKKKKKKKKR 52
R+ K+ KE +K K+ + K EEE +K++ K++ +++ K
Sbjct: 5 RVYELAKELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAE 59
>gnl|CDD|225381 COG2825, HlpA, Outer membrane protein [Cell envelope biogenesis,
outer membrane].
Length = 170
Score = 29.3 bits (66), Expect = 1.7
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ KK + E KK++K+ +K ++E K K+ K + K +
Sbjct: 41 QAKKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEA 82
Score = 28.5 bits (64), Expect = 3.8
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ KK E + KK++K+ +K +++ K K+ K + K + L
Sbjct: 40 PQAKKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEAL 83
Score = 28.1 bits (63), Expect = 5.3
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Query: 7 LKTKKKKKKK---------KKKEEKKKKKKK------KKKKEEEKKKKKKKKKKKKKKKK 51
LK K+ K + + K E + KK+K KK++E EK +++ ++++K +
Sbjct: 67 LKAKEAKLQDDGKMEALSDRAKAEAEIKKEKLVNAFNKKQQEYEKDLNRREAEEEQKLLE 126
Query: 52 RLY 54
++
Sbjct: 127 KIQ 129
>gnl|CDD|185443 PTZ00097, PTZ00097, 60S ribosomal protein L19; Provisional.
Length = 175
Score = 29.3 bits (66), Expect = 1.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K K EK K+KK + + E + K K + K+K KK
Sbjct: 142 KTKNEKVKEKKIQDQLEARRAKAKALRNKRKAKK 175
Score = 29.3 bits (66), Expect = 2.1
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+ K +K K+KK +++ + ++ K K + K+K +
Sbjct: 142 KTKNEKVKEKKIQDQLEARRAKAKALRNKRKAKK 175
Score = 27.7 bits (62), Expect = 6.6
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK 41
+E KTK +K K+KK +++ + ++ K K K+K KK
Sbjct: 137 IEAIHKTKNEKVKEKKIQDQLEARRAKAKALRNKRKAKK 175
>gnl|CDD|151656 pfam11214, Med2, Mediator complex subunit 2. This family of
mediator complex subunit 2 proteins is conserved in
fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts
with and phosphorylates Med2. Post-translational
modifications of Mediator subunits are important for
regulation of gene expression.
Length = 99
Score = 28.6 bits (64), Expect = 1.8
Identities = 11/20 (55%), Positives = 19/20 (95%)
Query: 26 KKKKKKKEEEKKKKKKKKKK 45
+ KKK++EEE+KKK++++KK
Sbjct: 80 ENKKKQEEEERKKKEEEEKK 99
Score = 26.6 bits (59), Expect = 8.7
Identities = 11/20 (55%), Positives = 19/20 (95%)
Query: 27 KKKKKKEEEKKKKKKKKKKK 46
+ KKK+EEE++KKK++++KK
Sbjct: 80 ENKKKQEEEERKKKEEEEKK 99
>gnl|CDD|202045 pfam01920, Prefoldin_2, Prefoldin subunit. This family includes
prefoldin subunits that are not detected by pfam02996.
Length = 106
Score = 28.4 bits (64), Expect = 1.8
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK 41
LE R +T +K+ K +K+ +K +K+ ++ KEE K +
Sbjct: 67 LEERKETLEKEIKTLEKQLEKLEKELEELKEELYKLFGQ 105
Score = 28.4 bits (64), Expect = 2.3
Identities = 9/38 (23%), Positives = 24/38 (63%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+++K+ ++E K +K+ +K E+E ++ K++ K +
Sbjct: 68 EERKETLEKEIKTLEKQLEKLEKELEELKEELYKLFGQ 105
Score = 27.2 bits (61), Expect = 4.7
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
++ L+ +K+ +K+ K +K+ +K +K+ EE K++ K +
Sbjct: 61 EEVKEELEERKETLEKEIKTLEKQLEKLEKELEELKEELYKLFGQ 105
Score = 26.8 bits (60), Expect = 6.3
Identities = 12/42 (28%), Positives = 30/42 (71%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K+ K++ K++ E++K+ +K+ K EK+ +K +K+ ++ K++
Sbjct: 57 KQDKEEVKEELEERKETLEKEIKTLEKQLEKLEKELEELKEE 98
Score = 26.8 bits (60), Expect = 6.8
Identities = 9/39 (23%), Positives = 25/39 (64%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+++K+ EK+ K +K+ ++ EK+ ++ K++ K ++
Sbjct: 68 EERKETLEKEIKTLEKQLEKLEKELEELKEELYKLFGQQ 106
Score = 26.4 bits (59), Expect = 9.4
Identities = 9/38 (23%), Positives = 24/38 (63%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
+++K+ +KE K +K+ +K ++E ++ K++ K +
Sbjct: 68 EERKETLEKEIKTLEKQLEKLEKELEELKEELYKLFGQ 105
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 30.3 bits (68), Expect = 1.8
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K ++ + K K K+K +EK K KK + K+ KR
Sbjct: 203 KMRRSPRNTSTIKNNTNDKNKEKNKEKDKNIKKDRDGDKQTKR 245
Score = 28.8 bits (64), Expect = 5.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K K +EK K+K K KK+ + K+ K+ +K K
Sbjct: 215 KNNTNDKNKEKNKEKDKNIKKDRDGDKQTKRNSEKSK 251
>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 30.3 bits (69), Expect = 1.9
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK 41
+L+ +K K KKK+KEE ++ K+
Sbjct: 142 KLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKE 177
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit
protein 2. THO and TREX form a eukaryotic complex
which functions in messenger ribonucleoprotein
metabolism and plays a role in preventing the
transcription-associated genetic instability. Tho2,
along with four other subunits forms THO.
Length = 296
Score = 30.0 bits (68), Expect = 1.9
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 2 SLEGRLKT--KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
LE ++K KKK+EKK+ K KK EEE KK + +K KK+
Sbjct: 35 RLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIEHNEKTKKR 84
Score = 28.4 bits (64), Expect = 5.1
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK-KKKKKKKKRLYLPTSIPLSHYFK 66
K ++ +K+ K+ + KKKKE+++ K KK +++ KK T LS +
Sbjct: 31 KEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIEHNEKTKKRLSE--E 88
Query: 67 KAHMVPRCN 75
K+ P +
Sbjct: 89 KSSWFPSKD 97
>gnl|CDD|234773 PRK00461, rpmC, 50S ribosomal protein L29; Reviewed.
Length = 87
Score = 28.1 bits (63), Expect = 2.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK 42
R+ T +++ ++KE K+ KK KK + K K+
Sbjct: 51 RILTILNERELEEKENNKEPKKNTKKAVKLASKAGKQ 87
>gnl|CDD|222791 PHA00431, PHA00431, internal virion protein C.
Length = 746
Score = 30.1 bits (68), Expect = 2.0
Identities = 8/51 (15%), Positives = 24/51 (47%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
L ++ + ++K ++ EK K K+ + +++ ++K+K+
Sbjct: 689 LLSKMYQENQQKLAEEAREKALKDANKRAPIVAATQAREEVREKRKQTSGF 739
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 30.1 bits (69), Expect = 2.0
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
E L K +K K ++ KK +K ++KK E + + KK K ++K
Sbjct: 213 ESELPEKVLEKFKALAKQYKKLRKAQEKKVEGRLAQHKKYAKLREK 258
Score = 29.8 bits (68), Expect = 2.2
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 1 MSLEGRLKTKKKK--KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
SL +K +K K ++ KK +K ++K+ E + + KK K ++K
Sbjct: 207 DSLAADESELPEKVLEKFKALAKQYKKLRKAQEKKVEGRLAQHKKYAKLREK 258
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic
acid-binding [General function prediction only].
Length = 239
Score = 29.6 bits (67), Expect = 2.0
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 6 RLKTKKKKKKK---KKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
RL+ + K+ +K K K E + K + E E + + + +
Sbjct: 21 RLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQ 63
Score = 29.3 bits (66), Expect = 2.3
Identities = 6/43 (13%), Positives = 20/43 (46%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K + + E + + + + E E ++ +++ K+ ++K
Sbjct: 39 ELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEK 81
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 29.6 bits (67), Expect = 2.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
E+ K+K+E +KK+KKKK KK K
Sbjct: 342 SPPAAFERPLALSPKRKREGDKKQKKKKSKKLK 374
Score = 29.3 bits (66), Expect = 2.9
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 14 KKKKKKEEKKKKKKKKKKK 32
K+K++ ++K+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
Score = 28.1 bits (63), Expect = 8.4
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 13 KKKKKKKEEKKKKKKKKKK 31
K+K++ +++KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 30.2 bits (68), Expect = 2.2
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKE 33
+KKKKKKK +EKKKKK ++ K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 29.5 bits (66), Expect = 3.0
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKK 32
++KKKKKKK KE+KKKK ++ K+
Sbjct: 683 SRKKKKKKKSKEKKKKKNREASKQ 706
Score = 29.1 bits (65), Expect = 4.0
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 25 KKKKKKKKEEEKKKKKKKKKKKK 47
+KKKKKKK +EKKKKK ++ K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 29.1 bits (65), Expect = 4.8
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKK 37
+KKKK++K K+KKKKK +E K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 28.7 bits (64), Expect = 6.1
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 24 KKKKKKKKKEEEKKKKKKKKKKK 46
+KKKKKKK +E+KKKK ++ K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 28.3 bits (63), Expect = 8.3
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 23 KKKKKKKKKKEEEKKKKKKKKKK 45
+KKKKKKK KE++KKK ++ K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 27.9 bits (62), Expect = 9.4
Identities = 14/17 (82%), Positives = 15/17 (88%)
Query: 36 KKKKKKKKKKKKKKKKR 52
KKKKKKK K+KKKKK R
Sbjct: 685 KKKKKKKSKEKKKKKNR 701
>gnl|CDD|130217 TIGR01147, V_ATP_synt_G, vacuolar ATP synthase, subunit G. This
model describes the vacuolar ATP synthase G subunit in
eukaryotes and includes members from diverse groups
e.g., fungi, plants, parasites etc. V-ATPases are
multi-subunit enzymes composed of two functional
domains: A transmembrane Vo domain and a peripheral
catalytic domain V1. The G subunit is one of the
subunits of the catalytic domain. V-ATPases are
responsible for the acidification of endosomes and
lysosomes, which are part of the central vacuolar
system [Energy metabolism, ATP-proton motive force
interconversion].
Length = 113
Score = 28.3 bits (63), Expect = 2.2
Identities = 14/45 (31%), Positives = 31/45 (68%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+K + +K+K ++ K+ K++ +KE EK K++++K+ K+ + K L
Sbjct: 19 AEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHL 63
Score = 26.7 bits (59), Expect = 8.6
Identities = 15/45 (33%), Positives = 31/45 (68%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
L+ +K+ +K + K+K K+ K+ KEE +K+ +K K++++K+ K
Sbjct: 12 LQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFK 56
>gnl|CDD|206219 pfam14049, Dppa2_A, Dppa2/4 conserved region in higher
vertebrates. Developmental pluripotency associated
genes (Dppa) in lower vertebrates have remained
undetected until the discovery of a Dppa homologue in
Xenopus laevis, reporting a new domain termed Dppa2/4
conserved region (DCR). In higher vertebrate Dppa
proteins the DCR domain is located next to the
here-reported domain. The domain is subject to
structure determination by the Joint Center of
Structural Genomics.
Length = 86
Score = 27.8 bits (61), Expect = 2.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEE 35
MSLE +L+ +K K K+ K +K +K ++ EE
Sbjct: 8 MSLEAKLQRCSRKGKAVAKKAKLQKSCEKNERAEE 42
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 30.0 bits (68), Expect = 2.2
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK + K +EE++ ++ K+K+EE K +++ + + K+
Sbjct: 177 KKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKE 217
Score = 29.6 bits (67), Expect = 2.4
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK---KKKKKRL 53
LE LK K+++ K +EE + + K+ E++ + + +++K+ KK +++L
Sbjct: 190 LERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKL 243
Score = 29.6 bits (67), Expect = 2.9
Identities = 8/54 (14%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK-KKKKKRL 53
+ E + ++ K+K+++ K +++ + E ++ +K+ + + +++K+ L
Sbjct: 182 LKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEEL 235
Score = 28.1 bits (63), Expect = 7.4
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK + K EE+++ ++ K+K EE K +++ + + K
Sbjct: 177 KKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKE 217
>gnl|CDD|233042 TIGR00598, rad14, DNA repair protein. All proteins in this family
for which functions are known are used for the
recognition of DNA damage as part of nucleotide excision
repair. This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 172
Score = 29.0 bits (65), Expect = 2.2
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIP 60
M L +L+ +K+ + EE ++K+++ EE K++ K+KK +KK K+ R + +S
Sbjct: 74 MKLYLKLQVEKRALEVWGSEEALDEEKERR--EESKEEMKEKKFEKKLKELRRAVRSSEY 131
Query: 61 LSHYFKKAH 69
+ + H
Sbjct: 132 TNKKEGRVH 140
>gnl|CDD|221533 pfam12329, TMF_DNA_bd, TATA element modulatory factor 1 DNA
binding. This is the middle region of a family of TATA
element modulatory factor 1 proteins conserved in
eukaryotes that contains at its N-terminal section a
number of leucine zippers that could potentially form
coiled coil structures. The whole proteins bind to the
TATA element of some RNA polymerase II promoters and
repress their activity. by competing with the binding
of TATA binding protein. TMFs are evolutionarily
conserved golgins that bind Rab6, a ubiquitous ras-like
GTP-binding Golgi protein, and contribute to Golgi
organisation in animal and plant cells.
Length = 74
Score = 27.7 bits (62), Expect = 2.3
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
KK + K K+ EK+ + KKK ++ EK+ + +++ K+ +
Sbjct: 36 KKLRAKNKELEKEIAELKKKLEKLEKELENLEERLKRAE 74
Score = 26.9 bits (60), Expect = 4.2
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
KK+ K KK + K K+ E+E + KKK +K +K+ + L
Sbjct: 26 KKELKHNNTIKKLRAKNKELEKEIAELKKKLEKLEKELENL 66
Score = 26.5 bits (59), Expect = 6.0
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
KK + K K+ E++ + KKK +K E++ + +++ K+ +
Sbjct: 36 KKLRAKNKELEKEIAELKKKLEKLEKELENLEERLKRAE 74
>gnl|CDD|191634 pfam06886, TPX2, Targeting protein for Xklp2 (TPX2). This family
represents a conserved region approximately 60 residues
long within the eukaryotic targeting protein for Xklp2
(TPX2). Xklp2 is a kinesin-like protein localised on
centrosomes throughout the cell cycle and on spindle
pole microtubules during metaphase. In Xenopus, it has
been shown that Xklp2 protein is required for
centrosome separation and maintenance of spindle
bi-polarity. TPX2 is a microtubule-associated protein
that mediates the binding of the C-terminal domain of
Xklp2 to microtubules. It is phosphorylated during
mitosis in a microtubule-dependent way.
Length = 57
Score = 27.0 bits (60), Expect = 2.3
Identities = 12/41 (29%), Positives = 29/41 (70%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+K+ + KK EEK+K + +K++ E ++K+++++ K+ +K
Sbjct: 8 EKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEAIKQLRK 48
Score = 26.6 bits (59), Expect = 4.1
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
E R + KK ++K+K E +K++ + ++KEEE++ K+ +K
Sbjct: 8 EKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEAIKQLRK 48
Score = 26.2 bits (58), Expect = 4.4
Identities = 13/43 (30%), Positives = 30/43 (69%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+K+ + KK E+K+K + +K+E E ++K+++++ K+ +K L
Sbjct: 8 EKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEAIKQLRKEL 50
>gnl|CDD|217318 pfam03011, PFEMP, PFEMP DBL domain. PfEMP1 (Plasmodium
falciparum erythrocyte membrane protein) has been
identified as the rosetting ligand of the malaria
parasite P. falciparum. Rosetting is the adhesion of
infected erythrocytes with uninfected erythrocytes in
the vasculature of the infected organ, and is
associated with severe malaria. PfEMP1 interacts with
Complement Receptor One on uninfected erythrocytes to
form rosettes.
Length = 150
Score = 28.8 bits (65), Expect = 2.3
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 9 TKKKKKKKKKKEEKKK----KKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
K K K KKK +K +KKK+E +K K+ K+ K R
Sbjct: 24 INNGKGKCCKCICKKKCECVEKWIEKKKKEWEKIKEHFNKQYKIDDGRDE 73
>gnl|CDD|227666 COG5374, COG5374, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 29.4 bits (66), Expect = 2.3
Identities = 9/45 (20%), Positives = 24/45 (53%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K + +K + E +K +++ K +K + +++ +K+ KK+
Sbjct: 147 DLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKESSKKK 191
Score = 27.8 bits (62), Expect = 6.4
Identities = 9/44 (20%), Positives = 25/44 (56%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
LK + +K + + +K +++ K ++ + +++ +K+ KKK
Sbjct: 148 LKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKESSKKK 191
>gnl|CDD|165026 PHA02644, PHA02644, hypothetical protein; Provisional.
Length = 112
Score = 28.4 bits (62), Expect = 2.3
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K + KKE + +KK +K + E+EKK +K + + +KK +K
Sbjct: 53 KTTHEHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEK 93
Score = 27.3 bits (59), Expect = 5.5
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K + +KK +K E + +KK +K + E+EKK +K + + +K+
Sbjct: 61 KENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKE 101
Score = 26.9 bits (58), Expect = 7.5
Identities = 13/43 (30%), Positives = 28/43 (65%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK+ + +KK E+ + + +KK +K E + +KK +K + + +K+
Sbjct: 59 IKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKE 101
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 29.3 bits (66), Expect = 2.3
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
KK KK K K+K EE++ +K +KK K L
Sbjct: 118 SVMGINKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKEL 163
Score = 28.2 bits (63), Expect = 5.1
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKK---KKKEEEKKKKKKKKKKKKKKK 50
L + KK K+ K K+K +EEE +K +KK K+
Sbjct: 116 LYSVMGINKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKE 162
>gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.
Length = 631
Score = 29.7 bits (68), Expect = 2.3
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLP 56
+ E +K +K K + + + KK K+KKK LP
Sbjct: 364 QNPELAEKLAEKAIKAAQARLRAAKKVKRKKKTSGPA-LP 402
>gnl|CDD|234547 TIGR04330, cas_Cpf1, CRISPR-associated protein Cpf1, subtype
PREFRAN. This family is the long protein of a novel
CRISPR subtype, PREFRAN, which is most common in
Prevotella and Francisella, although widely distributed.
The PREFRAN type has Cas1, Cas2, and Cas4, but lacks the
helicase Cas3 and endonuclease Cas3-HD.
Length = 1287
Score = 29.8 bits (67), Expect = 2.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
KK+ + +K K KK+K EEK KK KK+
Sbjct: 382 KKQIEPRKGKSKKEKYEEKVKKVVKKQDYL 411
Score = 28.3 bits (63), Expect = 7.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K++ + +K K KK++ E+K KK KK+
Sbjct: 382 KKQIEPRKGKSKKEKYEEKVKKVVKKQDYL 411
Score = 27.9 bits (62), Expect = 9.2
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
KK+ E +K K KK+K EE+ KK KK+
Sbjct: 382 KKQIEPRKGKSKKEKYEEKVKKVVKKQDYL 411
>gnl|CDD|204935 pfam12474, PKK, Polo kinase kinase. This domain family is found in
eukaryotes, and is approximately 140 amino acids in
length. The family is found in association with
pfam00069. Polo-like kinase 1 (Plx1) is essential during
mitosis for the activation of Cdc25C, for spindle
assembly, and for cyclin B degradation. This family is
Polo kinase kinase (PKK) which phosphorylates Polo
kinase and Polo-like kinase to activate them. PKK is a
serine/threonine kinase.
Length = 142
Score = 28.8 bits (65), Expect = 2.4
Identities = 17/49 (34%), Positives = 35/49 (71%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ RLK K+ K +KKE K++ +K + +E+EKK+ K +K+++++K ++
Sbjct: 62 KTRLKMFKESLKIEKKELKQEVEKLPRFQEQEKKRMKAEKEEQEQKHQK 110
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 29.9 bits (67), Expect = 2.4
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 12 KKKKKKKKEEKKKKKKKK------------KKKEEEKKKKKKKKKKKKKKKKRLYLPTSI 59
KK + EE+K ++++ + E K+KK KK +K KKK+ L I
Sbjct: 239 KKYNQMSVEERKDFREEQISQFQHGLLQEDQTGRERKRKKGKKTSRKFKKKRVLITGVCI 298
Query: 60 PL 61
L
Sbjct: 299 AL 300
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16. Nop16 is a
protein involved in ribosome biogenesis.
Length = 173
Score = 28.9 bits (65), Expect = 2.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 25 KKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+KKKK + K +K+ K+K +KKK
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRKKKI 28
Score = 28.6 bits (64), Expect = 3.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 24 KKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+KKKK + + +K+ K+K +KKK +
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRKKKINII 31
Score = 28.6 bits (64), Expect = 3.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 23 KKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+KKKK + + +K+ K+K +KKK
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRKKKINII 31
Score = 28.6 bits (64), Expect = 3.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 21 EKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+KKKK + + +K+ K+K +KKK
Sbjct: 1 VRKKKKNRSSNYKVNRKRLKRKDRKKKINI 30
Score = 28.2 bits (63), Expect = 4.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKK 40
+KKKK + K +K+ K+K+ +KK
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRKKKINI 30
>gnl|CDD|240239 PTZ00041, PTZ00041, 60S ribosomal protein L35a; Provisional.
Length = 120
Score = 28.5 bits (64), Expect = 2.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 36 KKKKKKKKKKKKKKKKRLYLP 56
+ KKKKK +KKK RLY+
Sbjct: 3 QLTKKKKKTNRKKKPVRLYVK 23
>gnl|CDD|232925 TIGR00335, primase_sml, DNA primase, eukaryotic-type, small
subunit, putative. Archaeal members differ
substantially from eukaryotic members and should be
considered putative pending experimental evidence. The
protein is universal and single copy among completed
archaeal and eukarotic genomes to date. DNA primase
creates RNA primers needed for DNA replication.This
model is named putative because the assignment is
putative for archaeal proteins. Eukaryotic proteins
scoring above the trusted cutoff can be considered
authentic [DNA metabolism, DNA replication,
recombination, and repair].
Length = 297
Score = 29.5 bits (66), Expect = 2.4
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
K E++ K K + +K K K+ K +K+ Y
Sbjct: 198 LKALEEEILTSKLKILPNDLRKWKLIKEVIFKSEKKDY 235
Score = 28.7 bits (64), Expect = 4.4
Identities = 13/53 (24%), Positives = 19/53 (35%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSI 59
L +K K K+ K +KK E K K + + L P S+
Sbjct: 213 LPNDLRKWKLIKEVIFKSEKKDYSALEIYIDKIVLDDKVTLDRIRLLRHPKSL 265
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 30.0 bits (67), Expect = 2.4
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
K +++++ K K +K+++K+K+ +KE E K ++KK K
Sbjct: 57 RKGQQQRESKPKISKKERRKRKQAEKETEGKTEEKKSTAPK 97
Score = 29.6 bits (66), Expect = 2.7
Identities = 13/51 (25%), Positives = 30/51 (58%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIP 60
K +++++ K + KK+++K+K+ E+E + K ++KK K + +P
Sbjct: 58 KGQQQRESKPKISKKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELP 108
Score = 28.4 bits (63), Expect = 6.8
Identities = 13/45 (28%), Positives = 29/45 (64%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPL 61
+K +++++ K K KKE K+K+ +K+ + K ++K+ P + P+
Sbjct: 57 RKGQQQRESKPKISKKERRKRKQAEKETEGKTEEKKSTAPKNAPV 101
Score = 28.0 bits (62), Expect = 7.6
Identities = 12/41 (29%), Positives = 28/41 (68%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+K +++++ + K KK+++K+K+ EK+ + K ++KK K
Sbjct: 57 RKGQQQRESKPKISKKERRKRKQAEKETEGKTEEKKSTAPK 97
>gnl|CDD|216568 pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are
DNA methylases. The family contains both N-4
cytosine-specific DNA methylases and N-6
Adenine-specific DNA methylases.
Length = 219
Score = 29.3 bits (66), Expect = 2.4
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 9/62 (14%)
Query: 9 TKKKKKK-------KKKKEEKKKKKKKKKKKEEEKKKKKKKK--KKKKKKKKRLYLPTSI 59
+K KK K +EK K KK+ + K + + +K+ PT
Sbjct: 105 SKTKKYYTFNYDAIKVPYDEKDKLKKRGDSEPNGKPIGDVWDFPRVQPSEKESGGHPTQK 164
Query: 60 PL 61
P
Sbjct: 165 PE 166
>gnl|CDD|150786 pfam10153, DUF2361, Uncharacterized conserved protein (DUF2361).
This is a region of 120 amino acids that is conserved
in a family of proteins found from plants to fungi. The
function is not known.
Length = 114
Score = 28.3 bits (64), Expect = 2.4
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 4 EGRLKTKKKKKK-------KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
E R K KK KK ++KK ++ K+ +KK +E +K+ K K++ K +
Sbjct: 41 ERRKKRKKMAKKYHMVRFFERKKATRRLKQLEKKLEETSDEKEIKDLKEQLSKAE 95
Score = 27.6 bits (62), Expect = 5.0
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KKK + EK++ + KK+ E+ +++KK+KK KK
Sbjct: 14 KKKDLPADVRVEKERALEALKKELEDAERRKKRKKMAKKYHM 55
Score = 27.2 bits (61), Expect = 6.3
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 3 LEGRLKTKKKKKKKKKKEEK--------KKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
L+ L+ +++KK+KK +K +KK ++ K+ E+K ++ +K+ K K++L
Sbjct: 33 LKKELEDAERRKKRKKMAKKYHMVRFFERKKATRRLKQLEKKLEETSDEKEIKDLKEQLS 92
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 27.6 bits (62), Expect = 2.4
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 17 KKKEEKKKKKKKKKKKEEE 35
+++KK++++EEE
Sbjct: 60 AAAAAAAEEEKKEEEEEEE 78
Score = 27.6 bits (62), Expect = 3.0
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 16 KKKKEEKKKKKKKKKKKEEE 35
+++KK+++++EEE
Sbjct: 60 AAAAAAAEEEKKEEEEEEEE 79
>gnl|CDD|234379 TIGR03876, cas_csaX, CRISPR type I-A/APERN-associated protein
CsaX. This family comprises a minor CRISPR-associated
protein family. It occurs only in the context of the
(strictly archaeal) Apern subtype of CRISPR/Cas system,
and is further restricted to the Sulfolobales,
including Metallosphaera sedula DSM 5348 and multiple
species of the genus Sulfolobus.
Length = 281
Score = 29.5 bits (66), Expect = 2.5
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 17/59 (28%)
Query: 30 KKKEEEKKKKKKKKKKKKK-----------KK------KRLYLPTSIPLSHYFKKAHMV 71
+ KEEE++K+ +K KK + KK K L PT +S K +
Sbjct: 20 RGKEEERRKRIEKTKKIEGILRIIPLSGNDKKPFEQALKCLNFPTQSTISEVLKNFNPD 78
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 29.6 bits (67), Expect = 2.5
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K K K K + K++E+ KKKKK +K
Sbjct: 882 KKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEKTD 922
>gnl|CDD|233309 TIGR01200, GLPGLI, GLPGLI family protein. This protein family was
first noted as a paralogous set in Porphyromonas
gingivalis, but it is more widely distributed among the
Bacteroidetes. The protein family is now renamed GLPGLI
after its best-conserved motif.
Length = 227
Score = 29.3 bits (66), Expect = 2.5
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK 44
K + K KK KK E+ KK K+K
Sbjct: 193 IKIELNPTPIIIIPKPKKGKKISREKFKKIKEKYY 227
Score = 27.7 bits (62), Expect = 7.1
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK 43
K + K KK KK +E+ KK K+K
Sbjct: 193 IKIELNPTPIIIIPKPKKGKKISREKFKKIKEKYY 227
Score = 27.3 bits (61), Expect = 9.7
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
K K + K KK K+ ++K KK K+K
Sbjct: 191 KAIKIELNPTPIIIIPKPKKGKKISREKFKKIKEKYY 227
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
Length = 977
Score = 29.9 bits (67), Expect = 2.6
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTS--IPLS 62
K + + K++K KKKK KKKE K + +++ ++K Y P S IP+
Sbjct: 115 KNRVESWKDKKNKKKKSAKKKEAHKAQIPPEQQMEEKPSADAYEPLSRVIPIP 167
>gnl|CDD|220267 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein is a
heteromeric structure-specific endonuclease found in
fungi. Slx4 with Slx1 acts as a nuclease on branched
DNA substrates, particularly simple-Y, 5'-flap, or
replication fork structures by cleaving the strand
bearing the 5' non-homologous arm at the branch
junction and thus generating ligatable nicked products
from 5'-flap or replication fork substrates.
Length = 627
Score = 29.6 bits (66), Expect = 2.6
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 11/53 (20%)
Query: 6 RLKTKKKKKKKKKKEE-----------KKKKKKKKKKKEEEKKKKKKKKKKKK 47
RL+ ++ + E K+ KKKK KK + +K+ K+K KK K
Sbjct: 42 RLQLRQVISRFTSFESDDQANSGNVSGKRVPKKKKIKKPKLRKRTKRKNKKIK 94
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 29.8 bits (66), Expect = 2.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
K E K + + K E + KK+ +K KKKK K+R +L
Sbjct: 306 KHINELKSLEHRAAKAAEAEMKKRAEKPKKKKSKRRGWL 344
Score = 29.0 bits (64), Expect = 4.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K E K + + K E E KK+ +K KKKK K++
Sbjct: 306 KHINELKSLEHRAAKAAEAEMKKRAEKPKKKKSKRR 341
>gnl|CDD|217010 pfam02387, IncFII_repA, IncFII RepA protein family. This protein
is plasmid encoded and found to be essential for plasmid
replication.
Length = 279
Score = 29.2 bits (66), Expect = 2.8
Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 10 KKKKKKKKKK-----EEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
KK KKK E +++ K+ ++ + ++K KK+++ ++L
Sbjct: 180 NKKLKKKGLIPLTLDEARRRAKEFHIERAFSYRTERKAFGKKRRRARKL 228
>gnl|CDD|226044 COG3513, COG3513, Predicted CRISPR-associated nuclease, contains
McrA/HNH-nuclease and RuvC-like nuclease domain [Defense
mechanisms].
Length = 1088
Score = 29.9 bits (67), Expect = 2.8
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
KT K +K +K++E+ K ++K KE + K+ + K K +L L
Sbjct: 519 KTFKGRKNIEKRQEENYKAREKAIKEFGQILKEHPLENKSKDILKLRL 566
>gnl|CDD|130130 TIGR01058, parE_Gpos, DNA topoisomerase IV, B subunit,
Gram-positive. Operationally, topoisomerase IV is a
type II topoisomerase required for the decatenation step
of chromosome segregation. Not every bacterium has both
a topo II and a topo IV. The topo IV families of the
Gram-positive bacteria and the Gram-negative bacteria
appear not to represent a single clade among the type II
topoisomerases, and are represented by separate models
for this reason [DNA metabolism, DNA replication,
recombination, and repair].
Length = 637
Score = 29.4 bits (66), Expect = 2.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
+K + K+ KK E+KK KK KK++ K + K K L+L
Sbjct: 376 IKARDAKEAAKKAREEKKSGKKPKKEKGILSGKLTPAQSKNPAKNELFL 424
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 29.3 bits (66), Expect = 2.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK++KKKKK K+ + KK ++K+
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKK 43
Score = 29.3 bits (66), Expect = 3.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
K KKKKKKK KE + KK ++KK+ ++
Sbjct: 8 FKKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEE 48
Score = 29.0 bits (65), Expect = 3.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
KKKKKKKKK ++ + KK ++KK+ ++
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEE 48
Score = 29.0 bits (65), Expect = 4.3
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLP 56
KKKKKKKK +E + KK ++KK+ ++ Y
Sbjct: 10 KKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEEGTFNNYGT 56
Score = 28.6 bits (64), Expect = 5.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KKK++KKKK K+ + KK ++KKR
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKR 44
Score = 28.2 bits (63), Expect = 7.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
KKKKKKKKK K+ + K+ ++KK+ ++
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEEGTF 51
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 28.8 bits (65), Expect = 2.8
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KKE ++ ++ K + EEE ++ K+ + + + +K
Sbjct: 82 KKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKE 116
Score = 28.0 bits (63), Expect = 4.3
Identities = 8/36 (22%), Positives = 23/36 (63%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK+ E+ ++ K + ++E E+ K+ + + + +K++
Sbjct: 82 KKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKER 117
Score = 27.6 bits (62), Expect = 5.8
Identities = 11/50 (22%), Positives = 29/50 (58%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
E R + + ++ KK+ E+ ++ K + +EE ++ K+ + + + +K+R
Sbjct: 69 EAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERA 118
>gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII. Eukaryotic DNA topoisomerase
II, GyrB, ParE.
Length = 594
Score = 29.4 bits (67), Expect = 2.9
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 15 KKKKKEEKKKKKKKKKKKEEEKKKKKK-KKKKKKKKKKRLYLPT 57
++ E K +K + + KK ++ +KKK + LP
Sbjct: 326 LEENPVEASKIVEKVLLAAKARAAAKKARELTRKKKLSSISLPG 369
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents
the seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is
recognized by the pfam model tRNA-synt_2b. The
seryl-tRNA synthetases of two archaeal species,
Methanococcus jannaschii and Methanobacterium
thermoautotrophicum, differ considerably and are
included in a different model [Protein synthesis, tRNA
aminoacylation].
Length = 418
Score = 29.3 bits (66), Expect = 3.0
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
L ++ + K+ + K+ K K +KK K EE KK+ K+ K++ + L
Sbjct: 42 LLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAAL 92
Score = 27.7 bits (62), Expect = 8.9
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLP 56
K K +KK K E+ KK+ K+ K+E + K + + + K L +P
Sbjct: 61 GKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIP 107
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 29.3 bits (66), Expect = 3.0
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
LE + + KK ++K+ E K + + E E + +K +K
Sbjct: 150 LEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNA 197
Score = 27.8 bits (62), Expect = 7.5
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKK-----KKKKKKEEEKKKKKKKKKKKKKK 49
+L L K+ +K +++K + K+E K +++ +
Sbjct: 197 ALIAALAAKEASALGEKAALEEQKALAEAAAAEAAKQEAAAKAAAQEQAALQA 249
>gnl|CDD|239572 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A subgroup of the
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB. Topo IB proteins include the
monomeric yeast and human topo I and heterodimeric topo
I from Leishmania donvanni. Topo I enzymes are divided
into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topos I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I have putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 217
Score = 29.1 bits (65), Expect = 3.0
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKE 33
++ L+ +K+KKK KEEK+ KKK++ K+E
Sbjct: 87 SLIKNHLEEEKEKKKNLNKEEKEAKKKERAKRE 119
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 29.5 bits (66), Expect = 3.1
Identities = 9/40 (22%), Positives = 23/40 (57%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK 43
E ++ K +++++ ++E + K +K + + E K+K K
Sbjct: 432 EHQIYRKLQEERRLREEAIRAKAEKTARMKAEMKEKTLKM 471
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase.
Length = 448
Score = 29.3 bits (66), Expect = 3.2
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K KE K K K+ E + K+ KK+ +K+ +
Sbjct: 58 KLNKEVAKLKIAKEDATELIAETKELKKEITEKEAE 93
Score = 29.3 bits (66), Expect = 3.4
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K+ K K KE+ + + K+ ++E +K+ + ++ K
Sbjct: 61 KEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAA 100
Score = 28.9 bits (65), Expect = 4.9
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+K+ K +E K K K+ E + K+ KK+ +K+ +
Sbjct: 51 SLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEV 94
Score = 27.7 bits (62), Expect = 9.2
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPT-------SIP 60
K K+ K K +E + + K+ +++ +K+ + ++ K L T S+P
Sbjct: 58 KLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSVP 117
Query: 61 LS 62
+S
Sbjct: 118 VS 119
>gnl|CDD|113514 pfam04747, DUF612, Protein of unknown function, DUF612. This
family includes several uncharacterized proteins from
Caenorhabditis elegans.
Length = 517
Score = 29.3 bits (64), Expect = 3.2
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPL 61
K K ++++ +KE++KK+ KK + E+KK+K K +K +K +K T P+
Sbjct: 120 KQWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKKASTPAPV 173
Score = 29.3 bits (64), Expect = 3.4
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 4 EGRLKTKKKKKKKKKKEEKK--KKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
E R + KK+ ++EE K K ++++ +KE+EKK+ KK + +KKK++
Sbjct: 101 EARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEK 151
Score = 29.3 bits (64), Expect = 3.6
Identities = 15/47 (31%), Positives = 33/47 (70%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
E + + ++++ K+ K E+++ +K+++KKE + KK + +KKK+K K
Sbjct: 108 EAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVK 154
Score = 28.9 bits (63), Expect = 4.1
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+ + ++ +K+++KKE KK + +KKKE+ K +K +K +K KK
Sbjct: 123 KAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKK 166
>gnl|CDD|221643 pfam12572, DUF3752, Protein of unknown function (DUF3752). This
domain family is found in eukaryotes, and is typically
between 140 and 163 amino acids in length.
Length = 148
Score = 28.5 bits (64), Expect = 3.2
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+K+ K+ +K +E +KK+ K E+ +KK+KKKKK+++
Sbjct: 64 SAKASKRDKEMARKVKEYNEKKRGKSLVEQHQKKQKKKKKEEENDD 109
Score = 27.0 bits (60), Expect = 8.7
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK 42
++K +KK+ K E+ +KK+KKKKKEEE ++
Sbjct: 77 KVKEYNEKKRGKSLVEQHQKKQKKKKKEEENDDPSRR 113
>gnl|CDD|220792 pfam10513, EPL1, Enhancer of polycomb-like. This is a family of
EPL1 (Enhancer of polycomb-like) proteins. The EPL1
protein is a member of a histone acetyltransferase
complex which is involved in transcriptional activation
of selected genes.
Length = 145
Score = 28.5 bits (64), Expect = 3.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 32 KEEEKKKKKKKKKKKKKKKKRLYLPT 57
KEEE +K + + K+LY+PT
Sbjct: 40 KEEEWEKHLQVPISAAQVAKKLYIPT 65
>gnl|CDD|222426 pfam13870, DUF4201, Domain of unknown function (DUF4201). This is
a family of coiled-coil proteins from eukaryotes. The
function is not known.
Length = 177
Score = 28.7 bits (65), Expect = 3.2
Identities = 12/47 (25%), Positives = 31/47 (65%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
L+ + ++ KK+ KE++++ K +K+ + K ++ K +K+ KK +++
Sbjct: 89 LEEELERLKKELKEKEERLAKLRKELYKVKLERDKLRKQNKKLRQQG 135
Score = 27.6 bits (62), Expect = 6.6
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
RLK K K+K +++ E KK+ K+K+++ K +K LY
Sbjct: 67 RLKLKYTNTVHILTHLKEKLHMLEEELERLKKELKEKEERLAKLRKELY 115
>gnl|CDD|192488 pfam10228, DUF2228, Uncharacterized conserved protein (DUF2228).
This is a family of conserved proteins of approximately
700 residues found from worms to humans.
Length = 253
Score = 28.9 bits (65), Expect = 3.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
L + K KKKK +K ++ + KE ++K K K++KKK
Sbjct: 92 LTKKSKEIPFKKKKISALKKIQELLTEWAKELGLSLEQKTKVMKQRKKK 140
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 29.1 bits (64), Expect = 3.3
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
RLK ++ + K +K+E +K++K +++ + E+ K+K KK
Sbjct: 163 RLKDEQHRHKARKQELRKREKDRERARREDAAAAAAAKQKAAAKK 207
Score = 28.4 bits (62), Expect = 5.9
Identities = 13/42 (30%), Positives = 28/42 (66%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K K +KKK+ + ++ K+ K+E+ + K +K++ +K++K R
Sbjct: 144 KVKNEKKKERQLAEQLAAKRLKDEQHRHKARKQELRKREKDR 185
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit. This
family includes the vacuolar ATP synthase E subunit, as
well as the archaebacterial ATP synthase E subunit.
Length = 195
Score = 28.8 bits (65), Expect = 3.3
Identities = 11/38 (28%), Positives = 25/38 (65%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K ++ + + EE+ + +K + +E EKK ++ +KK+K+
Sbjct: 9 KAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQ 46
Score = 27.7 bits (62), Expect = 6.6
Identities = 11/56 (19%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK--------KKKKKRL 53
++ + +++ + +K E ++ +KK ++ EKK+K+ + +K+ + + K L
Sbjct: 12 EIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQIIISNAKNEARLKVL 67
Score = 27.3 bits (61), Expect = 9.0
Identities = 10/38 (26%), Positives = 25/38 (65%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
K ++ + + E++ + +K + EE +KK ++ +KK+K+
Sbjct: 9 KAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQ 46
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component
TAF4 family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 28.9 bits (65), Expect = 3.3
Identities = 9/36 (25%), Positives = 26/36 (72%)
Query: 17 KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
K+KEE++++ +++++ E ++ + K+K K+++K
Sbjct: 121 KQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKA 156
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination,
and repair].
Length = 1187
Score = 29.3 bits (66), Expect = 3.4
Identities = 10/61 (16%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK---------KKKKKKKRL 53
+E + K ++K ++ ++ +++ ++ E E++KK++K K + + +L
Sbjct: 236 IESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKL 295
Query: 54 Y 54
+
Sbjct: 296 F 296
>gnl|CDD|218845 pfam05991, NYN_YacP, YacP-like NYN domain. This family consists of
bacterial proteins related to YacP. This family is
uncharacterized functionally, but it has been suggested
that these proteins are nucleases due to them containing
a NYN domain. NYN (for N4BP1, YacP-like Nuclease)
domains were discovered by Anantharaman and Aravind.
Based on gene neighborhoods it was suggested that the
bacterial YacP proteins interact with the Ribonuclease
III and TrmH methylase in a processome complex that
catalyzes the maturation of rRNA and tRNA.
Length = 165
Score = 28.3 bits (64), Expect = 3.5
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKK 42
L +K +KK +KK ++ +K +KK + +E +K +K
Sbjct: 123 LAEEVKRAEKKIRKKAEKRRKSRKKYLDRLSDEVLEKLEK 162
>gnl|CDD|239571 cd03489, Topoisomer_IB_N_LdtopoI_like,
Topoisomer_IB_N_LdtopoI_like: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the heterodimeric topo I from
Leishmania donvanni. Topo I enzymes are divided into:
topo type IA (bacterial) and type IB (eukaryotic). Topo
I relaxes superhelical tension in duplex DNA by creating
a single-strand nick, the broken strand can then rotate
around the unbroken strand to remove DNA supercoils and,
the nick is religated, liberating topo I. These enzymes
regulate the topological changes that accompany DNA
replication, transcription and other nuclear processes.
Human topo I is the target of a diverse set of
anticancer drugs including camptothecins (CPTs). CPTs
bind to the topo I-DNA complex and inhibit re-ligation
of the single-strand nick, resulting in the accumulation
of topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topo I play putative roles in
organizing the kinetoplast DNA network unique to these
parasites. This family may represent more than one
structural domain.
Length = 212
Score = 28.7 bits (64), Expect = 3.5
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEE 34
+K+KKK + KEEKK K++K K+ E
Sbjct: 94 EKEKKKSRTKEEKKALKEEKDKEAE 118
Score = 28.7 bits (64), Expect = 3.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKK 38
++K+KKK + +E+KK K++K KE E
Sbjct: 93 REKEKKKSRTKEEKKALKEEKDKEAEPYM 121
>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal. This domain
is specific to the N-terminal part of the prp1 splicing
factor, which is involved in mRNA splicing (and
possibly also poly(A)+ RNA nuclear export and cell
cycle progression). This domain is specific to the N
terminus of the RNA splicing factor encoded by prp1. It
is involved in mRNA splicing and possibly also
poly(A)and RNA nuclear export and cell cycle
progression.
Length = 131
Score = 28.0 bits (63), Expect = 3.5
Identities = 8/31 (25%), Positives = 24/31 (77%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKK 32
S++ R+ ++KK++++K++E+ +K +++ K
Sbjct: 69 SIDERMDERRKKRREQKEKEEIEKYREENPK 99
>gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase; Validated.
Length = 476
Score = 29.2 bits (66), Expect = 3.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 10 KKKKKKKKKKEE--KKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTS 58
K K K+ +KEE KK K K+K K KK+++ K K + L T
Sbjct: 197 KYLKIKEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPKGIILLATG 247
>gnl|CDD|222863 PHA02540, 61, DNA primase; Provisional.
Length = 337
Score = 29.2 bits (66), Expect = 3.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 21 EKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
E+ K++ K + K K + KK+KK +K
Sbjct: 85 ERFKERGTGKGRPVPKPKFEFKKEKKVIEK 114
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 29.3 bits (66), Expect = 3.7
Identities = 8/42 (19%), Positives = 21/42 (50%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
KK++ +EE ++ + + E KK++ + + + + L
Sbjct: 860 NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLREL 901
Score = 28.9 bits (65), Expect = 5.0
Identities = 5/50 (10%), Positives = 27/50 (54%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+L G+ + +++ ++ + + + + K+E + + + ++ ++K ++
Sbjct: 858 NLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE 907
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid
layers. The innermost capsid (core) is made of VP2. The
genomic RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 29.1 bits (65), Expect = 3.7
Identities = 7/39 (17%), Positives = 22/39 (56%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+ +++ + ++K +K+++K + + K+K KK+
Sbjct: 4 RNRREANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKE 42
Score = 28.8 bits (64), Expect = 4.7
Identities = 6/39 (15%), Positives = 22/39 (56%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
+ +++ ++ ++K +K+ ++ + + K+K KK+
Sbjct: 4 RNRREANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKE 42
Score = 28.8 bits (64), Expect = 5.8
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKK 40
+ ++K +EK+ +K + + KE+ KK+
Sbjct: 8 EANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKE 42
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 28.9 bits (65), Expect = 3.7
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
KK K+ + K KK + + + +KK
Sbjct: 241 SILKKSAAKRSEAPSSSKAKKNSRGIPKPRDALSSLVVRKKAA 283
Score = 28.2 bits (63), Expect = 7.4
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
KK K+ E K KK + K + +KK
Sbjct: 243 LKKSAAKRSEAPSSSKAKKNSRGIPKPRDALSSLVVRKKAA 283
>gnl|CDD|233787 TIGR02223, ftsN, cell division protein FtsN. FtsN is a poorly
conserved protein active in cell division in a number of
Proteobacteria. The N-terminal 30 residue region tends
to by Lys/Arg-rich, and is followed by a
membrane-spanning region. This is followed by an acidic
low-complexity region of variable length and a
well-conserved C-terminal domain of two tandem regions
matched by pfam05036 (Sporulation related repeat), found
in several cell division and sporulation proteins. The
role of FtsN as a suppressor for other cell division
mutations is poorly understood; it may involve cell wall
hydrolysis [Cellular processes, Cell division].
Length = 298
Score = 28.9 bits (64), Expect = 3.7
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+K+ +KK ++ + + +K E EK K K+ K+K+K
Sbjct: 148 EARKQTAEKKPQKARTAEAQKTPVETEKIASKVKEAKQKQK 188
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 29.2 bits (66), Expect = 3.7
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEE 35
+KKK+ KK+++K+ K+ E+
Sbjct: 170 GLVGVPGHSSDSEKKKQRKKQRRKRSKELRED 201
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 29.3 bits (66), Expect = 3.8
Identities = 10/54 (18%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKK---KKKKEEEKKKKKKKKKKKKKKKKRL 53
LE +L+ + K + +E + ++K K++ E + + ++ + + ++ + RL
Sbjct: 321 LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL 374
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 29.1 bits (65), Expect = 3.8
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFK 66
L+ +KK + + E +++ K K K + E K + +K+ + K+ K LS
Sbjct: 119 LEELEKKAENEAAEAEEEAKLLKDKLDAESLKLQNEKEDQLKEAKESISRIKNDLSEM-- 176
Query: 67 KAHMVPRCNAMRQ 79
+C A
Sbjct: 177 ------QCRAQNA 183
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional.
Length = 981
Score = 29.4 bits (66), Expect = 4.0
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
K++K +++K+E KK K+KK ++K KK K +
Sbjct: 191 KEEKAEERKQESKKGAKRKKDASGDDKSKKAKTDRD 226
Score = 28.6 bits (64), Expect = 5.8
Identities = 14/50 (28%), Positives = 20/50 (40%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
E R + KK K+KK K KK K + +KK + +L
Sbjct: 196 EERKQESKKGAKRKKDASGDDKSKKAKTDRDVSTSTAASQKKSSDLESKL 245
>gnl|CDD|237748 PRK14537, PRK14537, 50S ribosomal protein L20/unknown domain fusion
protein; Provisional.
Length = 230
Score = 28.8 bits (64), Expect = 4.1
Identities = 10/53 (18%), Positives = 20/53 (37%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
L T K KK E ++K + +E+ + +K + ++K
Sbjct: 116 FLSQFQSTTITKPKKVLINEVLQEKTINQNEEKTSLQNEKVLSPELSEEKSDS 168
>gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein.
Length = 122
Score = 27.6 bits (62), Expect = 4.1
Identities = 12/48 (25%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKK-KKEEEKKKKKKKKKKKKKKKKRL 53
L+ +K+ ++ +++ ++ +++KK +K E++KKK++K++ ++++K L
Sbjct: 68 LEQAEKQVEQAREQWQEANQERKKLEKLLEREKKKEQKEENRREQKLL 115
>gnl|CDD|223436 COG0359, RplI, Ribosomal protein L9 [Translation, ribosomal
structure and biogenesis].
Length = 148
Score = 27.9 bits (63), Expect = 4.1
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
K + K + ++ K E+K ++ + + K+K
Sbjct: 32 PKGLAVPATKGNLKLLEARRAKLEKKAAEELAEAEALKEK 71
Score = 27.2 bits (61), Expect = 7.5
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K + K + ++ + EKK ++ + + K+K
Sbjct: 32 PKGLAVPATKGNLKLLEARRAKLEKKAAEELAEAEALKEK 71
>gnl|CDD|220535 pfam10037, MRP-S27, Mitochondrial 28S ribosomal protein S27.
Members of this family of small ribosomal proteins
possess one of three conserved blocks of sequence found
in proteins that stimulate the dissociation of guanine
nucleotides from G-proteins, leaving open the
possibility that MRP-S27 might be a functional partner
of GTP-binding ribosomal proteins.
Length = 417
Score = 29.0 bits (65), Expect = 4.2
Identities = 9/54 (16%), Positives = 27/54 (50%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSI 59
L + +++ +KE+ + +++++ E +K ++KKK +++ Y
Sbjct: 360 SLLSVEERLPTIEKEDLELYEQRQQLWFFENRKLWQRKKKLREQADEEYQQRHA 413
>gnl|CDD|233294 TIGR01159, DRP1, density-regulated protein DRP1. This protein
family shows weak but suggestive similarity to
translation initiation factor SUI1 and its prokaryotic
homologs.
Length = 173
Score = 28.3 bits (63), Expect = 4.3
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
+ +++K E+ +K ++ E KKKKK +K
Sbjct: 55 TIGEAQEEKGEKDLLGIQKAQEAREGGKKKKKLPQK 90
Score = 28.3 bits (63), Expect = 4.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+ +EEK +K +K +E ++ KKKKK +K
Sbjct: 55 TIGEAQEEKGEKDLLGIQKAQEAREGGKKKKKLPQK 90
Score = 27.9 bits (62), Expect = 6.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
+ +++K EK +K ++ E KKKKK +K
Sbjct: 55 TIGEAQEEKGEKDLLGIQKAQEAREGGKKKKKLPQK 90
Score = 27.5 bits (61), Expect = 6.7
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
+ ++E+ +K +K +E ++ KKKKK +K
Sbjct: 55 TIGEAQEEKGEKDLLGIQKAQEAREGGKKKKKLPQK 90
>gnl|CDD|218585 pfam05424, Duffy_binding, Duffy binding domain. This domain is
found in Plasmodium Duffy binding proteins. Plasmodium
vivax and Plasmodium knowlesi merozoites invade human
erythrocytes that express Duffy blood group surface
determinants. The Duffy receptor family is localised in
micronemes, an organelle found in all organisms of the
phylum Apicomplexa.
Length = 276
Score = 28.8 bits (65), Expect = 4.3
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
KK KKKE K+KKK KK K+ KK K K K+
Sbjct: 236 KKWIDNKKKEWDKQKKKYKKYKKRNNKKNYSDIKDKYAKE 275
>gnl|CDD|150531 pfam09871, DUF2098, Uncharacterized protein conserved in archaea
(DUF2098). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 91
Score = 27.3 bits (61), Expect = 4.4
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKK 40
T K K+KK+++EE K++ ++ KKEEE +
Sbjct: 49 TDKVKEKKEEREEDKEELIERIKKEEETFEDV 80
Score = 26.9 bits (60), Expect = 5.7
Identities = 8/38 (21%), Positives = 24/38 (63%)
Query: 21 EKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTS 58
+K K+KK+++++++E+ ++ KK+++ + L
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAGC 87
>gnl|CDD|218771 pfam05835, Synaphin, Synaphin protein. This family consists of
several eukaryotic synaphin 1 and 2 proteins.
Synaphin/complexin is a cytosolic protein that
preferentially binds to syntaxin within the SNARE
complex. Synaphin promotes SNAREs to form precomplexes
that oligomerise into higher order structures. A
peptide from the central, syntaxin binding domain of
synaphin competitively inhibits these two proteins from
interacting and prevents SNARE complexes from
oligomerising. It is thought that oligomerisation of
SNARE complexes into a higher order structure creates a
SNARE scaffold for efficient, regulated fusion of
synaptic vesicles. Synaphin promotes neuronal
exocytosis by promoting interaction between the
complementary syntaxin and synaptobrevin transmembrane
regions that reside in opposing membranes prior to
fusion.
Length = 139
Score = 27.9 bits (62), Expect = 4.4
Identities = 11/51 (21%), Positives = 31/51 (60%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
++G L K+ + + EE+ ++ ++ ++ EE++K K +K +++++ R
Sbjct: 15 DVKGMLGGKEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREVMR 65
>gnl|CDD|187882 cd09751, Cas8a2_I-A, CRISPR/Cas system-associated protein Csa8a2.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Zn-finger domain containing protein, distant homologs of
Cas8 proteins; signature gene for I-A subtype; also
known as Csa4 family.
Length = 355
Score = 28.6 bits (64), Expect = 4.4
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 8/105 (7%)
Query: 35 EKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKKAHMVPRCNAMR-QIYEHGPLVAIFSVY 93
EK+ K+ K K + + L Y K+ R Y + F Y
Sbjct: 112 EKELKRGHKSLKGRGLLTVPLTLMPSAGKYLHKSRKPKEEKPYRVCKYCYALAWLGFHYY 171
Query: 94 ADFLQYKSG------VYQHNFGDSIGLHAVRVLGWGVENDIPYWL 132
A ++ K G + + + + + I +
Sbjct: 172 ASYIYVKDGRSRVVHITPAPPYEELEDIELLLQK-DEAKKILGVM 215
>gnl|CDD|187797 cd09666, Cas8a2_I-A, CRISPR/Cas system-associated protein Csa8a2.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Zn-finger domain containing protein, distant homologs of
Cas8 proteins; signature gene for I-A subtype; also
known as Csa4 family.
Length = 352
Score = 28.6 bits (64), Expect = 4.5
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 34 EEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKKAHMVPRCNAMRQI--YEHGPLVAIFS 91
E+ K + K+ KK + L Y K + + ++ + F
Sbjct: 114 EKIHKNLEGKRLSKKGLVTVPLTLMPLYGKYMTK-SLGVKGGKPIKVCPLCYALAWIGFH 172
Query: 92 VYADFLQYKSG 102
Y+ +++Y+ G
Sbjct: 173 YYSPYIKYQKG 183
>gnl|CDD|177060 CHL00138, rps5, ribosomal protein S5; Validated.
Length = 143
Score = 28.0 bits (63), Expect = 4.5
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEK--KKKKKKKKKKKKKKKR 52
KK ++K +K K+ K EE+ + K+ K K KK
Sbjct: 3 FLLKKMYNKKKNRKSNIKENKWEERVIQIKRVSKVVKGGKKLS 45
>gnl|CDD|218311 pfam04888, SseC, Secretion system effector C (SseC) like family.
SseC is a secreted protein that forms a complex
together with SecB and SecD on the surface of
Salmonella. All these proteins are secreted by the type
III secretion system. Many mucosal pathogens use type
III secretion systems for the injection of effector
proteins into target cells. SecB, SseC and SecD are
inserted into the target cell membrane. where they form
a small pore or translocon. In addition to SseC, this
family includes the bacterial secreted proteins PopB,
PepB, YopB and EspD which are thought to be directly
involved in pore formation, and type III secretion
system translocon.
Length = 303
Score = 28.6 bits (64), Expect = 4.5
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
L +L K+ K K ++ E + K++KK ++ +E+ KK +K ++ KK
Sbjct: 6 TELISKLAEKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKKS 55
Score = 28.6 bits (64), Expect = 4.6
Identities = 12/41 (29%), Positives = 28/41 (68%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+K+ K K ++ ++ + K++KK EE +++ KK +K ++ K+
Sbjct: 14 EKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKK 54
>gnl|CDD|203489 pfam06644, ATP11, ATP11 protein. This family consists of several
eukaryotic ATP11 proteins. In Saccharomyces cerevisiae,
expression of functional F1-ATPase requires two
proteins encoded by the ATP11 and ATP12 genes. Atp11p
is a molecular chaperone of the mitochondrial matrix
that participates in the biogenesis pathway to form F1,
the catalytic unit of the ATP synthase.
Length = 250
Score = 28.5 bits (64), Expect = 4.5
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPL 61
L+ LK K +KK+ K+ K+ K + K K KKK K + PL
Sbjct: 22 RLKKALKDKIEKKEFSAKKPPTGPSKQASKFKTLKPPKPADKKKPFDKPFK-------PL 74
Query: 62 SHYFK 66
S
Sbjct: 75 SSILD 79
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 28.5 bits (64), Expect = 4.5
Identities = 8/48 (16%), Positives = 29/48 (60%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
LK + +KK++ + + + + K++ E+++++ ++ K+ +++ L
Sbjct: 61 LLKLEVARKKERLNQIRARISQLKEEIEQKRERIEELKRALAQRRSDL 108
>gnl|CDD|148511 pfam06936, Selenoprotein_S, Selenoprotein S (SelS). This family
consists of several mammalian selenoprotein S (SelS)
sequences. SelS is a plasma membrane protein and is
present in a variety of tissues and cell types. The
function of this family is unknown.
Length = 190
Score = 28.3 bits (63), Expect = 4.5
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIP 60
K K+K+K+ +EEK+++K + + +E K K K ++ + + +P
Sbjct: 102 KFKEKQKQLEEEKRRQKIEMWDRMQEGKSYKVSAKLAQEATEETSSSSVLP 152
>gnl|CDD|233634 TIGR01914, cas_Csa4, CRISPR-associated protein Cas8a2/Csa4, subtype
I-A/APERN. CRISPR loci appear to be mobile elements
with a wide host range. This model represents a protein
that tends to be found near CRISPR repeats. The species
range for this species, so far, is exclusively archaeal.
It is found so far in only four different species, and
includes two tandem genes in Pyrococcus furiosus DSM
3638. This subfamily is found in a CRISPR/Cas locus we
designate APERN, so the family is designated Csa4, for
CRISPR/Cas Subtype Protein 4 [Mobile and
extrachromosomal element functions, Other].
Length = 354
Score = 28.6 bits (64), Expect = 4.6
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 34 EEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKKAHMVPRCNAMRQI--YEHGPLVAIFS 91
E+ K + K+ KK + L Y K + + ++ + F
Sbjct: 114 EKIHKNLEGKRLSKKGLVTVPLTLMPLYGKYMTK-SLGVKGGKPIKVCPLCYALAWIGFH 172
Query: 92 VYADFLQYKSG 102
Y+ +++Y+ G
Sbjct: 173 YYSPYIKYQKG 183
>gnl|CDD|216581 pfam01577, Peptidase_S30, Potyvirus P1 protease. The potyviridae
family positive stand RNA viruses with genome encoding
a polyprotein. members include zucchini yellow mosaic
virus, and turnip mosaic viruses which cause
considerable losses of crops worldwide. This family
consists of a C terminus region from various plant
potyvirus P1 proteins (found at the N terminus of the
polyprotein). The C terminus of P1 is a serine-type
protease responsible for autocatalytic cleavage between
P1 and the helper component protease pfam00851. The
entire P1 protein may be involved in virus-host
interactions.
Length = 245
Score = 28.5 bits (64), Expect = 4.6
Identities = 13/55 (23%), Positives = 33/55 (60%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
LE ++ + +K+ K +++KK + +K + KK++K K++++++R +L
Sbjct: 1 ADLEAKVAERLLRKEMSKIKQEKKGRIILRKLSPAQVAKKREKLKREEREERQFL 55
>gnl|CDD|223665 COG0592, DnaN, DNA polymerase sliding clamp subunit (PCNA homolog)
[DNA replication, recombination, and repair].
Length = 364
Score = 28.8 bits (65), Expect = 4.6
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 144 HGTFKILRGENEADIEMGFN--NRVEANSSEDDDLETMGCQNA 184
+I G ++++GFN ++ + D + G ++
Sbjct: 299 KAEEEIDVGYTGEELKIGFNLAYLLDVLKALDSEEVQFGFNDS 341
>gnl|CDD|234537 TIGR04313, aro_clust_Mycop, aromatic cluster surface protein.
Members of this family are absolutely restricted to the
Mollicutes (Mycoplasma and Ureaplasma). All have a
signal peptide, usually of the lipoprotein type,
suggesting surface expression. Most members have
lengths of about 280 residues but some members have a
nearly full-length duplication. The mostly nearly
invariant residue, a Trp,is part of a strongly
conserved 9-residue motif,
[ND]-W-[LY]-[WF]-X-[LF]-X-N-[LI], where X usually is
hydrophobic. Because the hydrophobic six-residue core
of this motif almost always contains three to four
aromatic residues, we name this family aromatic cluster
surface protein. Multiple paralogs may occur in a given
Mycoplasma, usually clustered on the genome.
Length = 297
Score = 28.5 bits (64), Expect = 4.7
Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 16/65 (24%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKK----------------KEEEKKKKKKKKKKKKKKK 50
K K KK K++KK K K K + K +K + K
Sbjct: 34 KLIKNKFDVKKDKKDKKWKVFLNNKYINNLLNLVFKNDEDEKNKYIKSQKNINSELYLKL 93
Query: 51 KRLYL 55
+L L
Sbjct: 94 LKLSL 98
>gnl|CDD|205163 pfam12958, DUF3847, Protein of unknown function (DUF3847). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 86
Score = 27.0 bits (60), Expect = 4.8
Identities = 13/41 (31%), Positives = 29/41 (70%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK ++ ++E +K +KK +K++ +EK+ + + KK +K ++K
Sbjct: 1 KKLEQLRQEIEKAEKKLRKEQHKEKRLQNQLKKLEKGERKE 41
Score = 26.2 bits (58), Expect = 8.0
Identities = 14/46 (30%), Positives = 31/46 (67%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K ++ +++ +K EKK +K++ K+K + + KK +K ++K++ RL
Sbjct: 1 KKLEQLRQEIEKAEKKLRKEQHKEKRLQNQLKKLEKGERKERTHRL 46
>gnl|CDD|237853 PRK14897, PRK14897, unknown domain/DNA-directed RNA polymerase
subunit A'' fusion protein; Provisional.
Length = 509
Score = 28.6 bits (64), Expect = 4.8
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
MS+ L +K K++ + ++ K K E + K ++ K+LYL
Sbjct: 277 MSVVVELDEEKMKERLIEYDDILAAISKLTFKTVEIDDGIIRLKPQQPSFKKLYL 331
>gnl|CDD|214378 CHL00160, rpl9, ribosomal protein L9; Provisional.
Length = 153
Score = 27.8 bits (62), Expect = 5.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
G LK +K +K + K+ K+K K K+ ++ +K KKK
Sbjct: 47 GSLKQQKMYQKILDLKLKEAKEKCLKVKQLLEEIQKFSVKKK 88
>gnl|CDD|176075 cd08693, C2_PI3K_class_I_beta_delta, C2 domain present in class I
beta and delta phosphatidylinositol 3-kinases (PI3Ks).
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases)
regulate cell processes such as cell growth,
differentiation, proliferation, and motility. PI3Ks
work on phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the inositol
ring. There are 3 classes of PI3Ks based on structure,
regulation, and specificity. All classes contain a C2
domain, a PIK domain, and a kinase catalytic domain.
The members here are class I, beta and delta isoforms of
PI3Ks and contain both a Ras-binding domain and a
p85-binding domain. Class II PI3Ks contain both of
these as well as a PX domain, and a C-terminal C2 domain
containing a nuclear localization signal. C2 domains
fold into an 8-standed beta-sandwich that can adopt 2
structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members have a type-I
topology.
Length = 173
Score = 28.0 bits (63), Expect = 5.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 8 KTKKKKKKKKKKEEKKKKKKK 28
+KK K K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 27.7 bits (62), Expect = 6.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 21 EKKKKKKKKKKKEEEKKKKKKK 42
E KK K K+ ++ + KKKKKK
Sbjct: 84 EVSKKAKGKRSRKNQTKKKKKK 105
Score = 27.3 bits (61), Expect = 8.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 20 EEKKKKKKKKKKKEEEKKKKKK 41
E KK K K+ +K + KKKKKK
Sbjct: 84 EVSKKAKGKRSRKNQTKKKKKK 105
>gnl|CDD|153327 cd07643, I-BAR_IMD_MIM, Inverse (I)-BAR, also known as the
IRSp53/MIM homology Domain (IMD), of Missing In
Metastasis. The IMD domain, also called
Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a
dimerization and lipid-binding module that bends
membranes and induces membrane protrusions. Members of
this subfamily include missing in metastasis (MIM) or
metastasis suppressor 1 (MTSS1), metastasis suppressor
1-like (MTSSL) or ABBA (Actin-Bundling protein with
BAIAP2 homology), and similar proteins. They contain an
N-terminal IMD and a WASP homology 2 (WH2) actin-binding
motif at the C-terminus. MIM was originally identified
as a missing transcript from metastatic bladder and
prostate cancer cells. It is a scaffold protein that
functions in a signaling pathway between the PDGF
receptor, Src kinases, and actin assembly. It may also
function as a cofactor of the Sonic hedgehog (Shh)
transcriptional pathway and may participate in tumor
development and progression via this pathway. ABBA
regulates actin and plasma membrane dynamics to promote
the extension of radial glia, which is important in
neuronal migration, axon guidance and neurogenesis. The
IMD domain of MIM binds and bundles actin filaments,
binds membranes, and interacts with the small GTPase
Rac.
Length = 231
Score = 28.2 bits (63), Expect = 5.0
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 3 LEGRLKTKKKK----KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
L+ +++ KK K KE KK +++ KKK + + +KK +K K
Sbjct: 102 LQEKIEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTIRLQKKARKGK 149
>gnl|CDD|220129 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA
splicing MRS1. Members of this family adopt a secondary
structure consisting of two beta sheets and one alpha
helix, arranged as a beta-alpha-beta motif. Each beta
sheet has five strands, arranged in a 32145 order, with
the second strand being antiparallel to the rest.
Mitochondrial resolvase Ydc2 is capable of resolving
Holliday junctions and cleaves DNA after 5'-CT-3' and
5'-TT-3' sequences. This family also contains the
mitochondrial RNA-splicing protein MRS1 which is
involved in the excision of group I introns.
Length = 254
Score = 28.5 bits (64), Expect = 5.1
Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 23/75 (30%)
Query: 8 KTKKKKKKKKKKEEKKKKKK----------------------KKKKKEE-EKKKKKKKKK 44
K K + KKK K KK + ++K + K + K K K
Sbjct: 155 KKKPRSKKKSSKNSKKLRIDLVGEWLSTAISPPDSSPVSLDAREKLRAYLPKWEGKTKNK 214
Query: 45 KKKKKKKRLYLPTSI 59
K K+ K L
Sbjct: 215 KSLKEYKDLIKLLDS 229
Score = 27.7 bits (62), Expect = 8.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 33 EEEKKKKKKKKKKKKKKKKR 52
E+KK + KKK K KK R
Sbjct: 153 AEKKKPRSKKKSSKNSKKLR 172
>gnl|CDD|149453 pfam08397, IMD, IRSp53/MIM homology domain. The N-terminal
predicted helical stretch of the insulin receptor
tyrosine kinase substrate p53 (IRSp53) is an
evolutionary conserved F-actin bundling domain involved
in filopodium formation. The domain has been named IMD
after the IRSp53 and missing in metastasis (MIM)
proteins in which it occurs. Filopodium-inducing IMD
activity is regulated by Cdc42 and Rac1 and is
SH3-independent.
Length = 218
Score = 28.2 bits (63), Expect = 5.1
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 3 LEGRLKTKKK----KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
LE + + KK K + E KKK+ + +KK+ + KK ++K +K K K +L
Sbjct: 89 LEKKTELDKKYANALDKDYQTEYKKKRDELEKKQSDLKKLQRKSQKGKNDSKYQL 143
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
subunit.
Length = 1044
Score = 28.7 bits (64), Expect = 5.1
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 5 GRLKTKKKKKKKKKKEEKK---KKKKKKKKKEEEKKKKKKKKKKKK 47
G + K KK KK KK + KK+KKK KK +KK
Sbjct: 605 GGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKK 650
Score = 28.0 bits (62), Expect = 9.0
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
GR KK KK KK KK+KK+ KK +KK + ++
Sbjct: 606 GRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVF 655
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 27.9 bits (63), Expect = 5.1
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ + + K + KK+K + K+ + K K+ + +
Sbjct: 65 AAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAES 104
>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper.
Length = 54
Score = 26.0 bits (58), Expect = 5.2
Identities = 8/38 (21%), Positives = 27/38 (71%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
+ + ++++ E ++ ++KKK++EEE +++ K+ +++
Sbjct: 4 EYRDRRRRNNEAARRSREKKKQREEELEERVKELEEEN 41
>gnl|CDD|220183 pfam09331, DUF1985, Domain of unknown function (DUF1985).
Members of this family of functionally uncharacterized
domains are found in a set of Arabidopsis thaliana
hypothetical proteins.
Length = 142
Score = 27.8 bits (62), Expect = 5.4
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEK-----KKKKKKKKKKKKKKKRLYL 55
G+ +KK KKK ++ K K++ +K KKKKKK + + RL L
Sbjct: 39 GKYPKEKKVKKKGTLKKGPFWNKLFGLKKDVTVDDVEEKLKKKKKKDSEDRLRLAL 94
>gnl|CDD|151885 pfam11446, DUF2897, Protein of unknown function (DUF2897). This
is a bacterial family of uncharacterized proteins.
Length = 55
Score = 26.1 bits (58), Expect = 5.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKK 40
K K K + +K+KKKK K+ E++ K
Sbjct: 24 KYSAKMKFPQFDKQKKKKAKRNAEQDAKNSA 54
>gnl|CDD|240235 PTZ00032, PTZ00032, 60S ribosomal protein L18; Provisional.
Length = 211
Score = 28.3 bits (63), Expect = 5.5
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKK 39
L TK+ K K K K K + EEK ++
Sbjct: 53 LLTKRSKLKGIPKPRKLHKHGFWAEIFEEKVER 85
>gnl|CDD|216134 pfam00816, Histone_HNS, H-NS histone family.
Length = 92
Score = 26.8 bits (60), Expect = 5.7
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKK-------EEEKKKKKKKKKKKKKKKKR 52
LE ++ +K+ + +K E+ + ++ EE KKK KKK+
Sbjct: 3 LEALIEKLEKEIEAARKAERAAALAEIRELAAEYGLTLEELLGGAAKKKAKKKRAPV 59
>gnl|CDD|148061 pfam06229, FRG1, FRG1-like family. The human FRG1 gene maps to
human chromosome 4q35 and has been identified as a
candidate for facioscapulohumeral muscular dystrophy.
Currently, the function of FRG1 is unknown.
Length = 189
Score = 28.2 bits (63), Expect = 5.7
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
+ R++ + K + K+ K KK +K + KK + K+ KK +
Sbjct: 124 TDRIRMEARFKPRIKESKYVKKFQKIQDKKLRLSDDEVKRLKKARA 169
>gnl|CDD|214818 smart00784, SPT2, SPT2 chromatin protein. This entry includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 106
Score = 27.0 bits (60), Expect = 5.7
Identities = 7/34 (20%), Positives = 25/34 (73%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+EE++ + + + EE++ +K+++++K+ +K++
Sbjct: 73 EEERRSARLARLEDREEERLEKEEEREKRARKRK 106
Score = 27.0 bits (60), Expect = 6.0
Identities = 8/34 (23%), Positives = 25/34 (73%)
Query: 18 KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
++E + + + + +EEE+ +K+++++K+ +K+K
Sbjct: 73 EEERRSARLARLEDREEERLEKEEEREKRARKRK 106
>gnl|CDD|178669 PLN03122, PLN03122, Poly [ADP-ribose] polymerase; Provisional.
Length = 815
Score = 28.6 bits (64), Expect = 5.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKK 45
EG+ T+K+K + K+ E ++ KK KK+K+++ K
Sbjct: 16 EGKGGTRKQKAENKEHEGEQSPKKAKKEKKQDDSGNGNGKSA 57
>gnl|CDD|214960 smart00991, WHEP-TRS, A conserved domain of 46 amino acids,
called WHEP-TRS has been shown.to exist in a number of
higher eukaryote aminoacyl-transfer RNA synthetases.
This domain is present one to six times in the several
enzymes. There are three copies in mammalian
multifunctional aminoacyl-tRNA synthetase in a region
that separates the N-terminal glutamyl-tRNA synthetase
domain from the C-terminal prolyl-tRNA synthetase
domain, and six copies in the intercatalytic region of
the Drosophila enzyme. The domain is found at the
N-terminal extremity of the mammalian tryptophanyl-
tRNA synthetase and histidyl-tRNA synthetase, and the
mammalian, insect, nematode and plant glycyl- tRNA
synthetases. This domain could contain a central
alpha-helical region and may play a role in the
association of tRNA-synthetases into multienzyme
complexes.
Length = 56
Score = 25.8 bits (57), Expect = 5.8
Identities = 9/44 (20%), Positives = 14/44 (31%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+LK +K K + K K + KE + K
Sbjct: 13 KLKAEKASKDEIDAAVAKLLALKAQLKEATGQDYKPGAPPGDTP 56
>gnl|CDD|220366 pfam09728, Taxilin, Myosin-like coiled-coil protein. Taxilin
contains an extraordinarily long coiled-coil domain in
its C-terminal half and is ubiquitously expressed. It is
a novel binding partner of several syntaxin family
members and is possibly involved in Ca2+-dependent
exocytosis in neuroendocrine cells. Gamma-taxilin,
described as leucine zipper protein Factor Inhibiting
ATF4-mediated Transcription (FIAT), localises to the
nucleus in osteoblasts and dimerises with ATF4 to form
inactive dimers, thus inhibiting ATF4-mediated
transcription.
Length = 309
Score = 28.5 bits (64), Expect = 5.8
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKK----EEEKKKKKKKKKKKKKKKKRL 53
+KK KK +K+ K+K +K K EE++K+ K+ +K KKK +L
Sbjct: 250 SKKIKKLEKENLAWKRKWEKSNKALLEMAEERQKRDKEIEKLKKKIDKL 298
>gnl|CDD|238560 cd01140, FatB, Siderophore binding protein FatB. These proteins
have been shown to function as ABC-type initial
receptors in the siderophore-mediated iron uptake in
some eubacterial species. They belong to the TroA
superfamily of periplasmic metal binding proteins that
share a distinct fold and ligand binding mechanism. A
typical TroA protein is comprised of two globular
subdomains connected by a single helix and can bind
their ligands in the cleft between these domains.
Length = 270
Score = 28.4 bits (64), Expect = 5.8
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 19 KEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
KEE+ K+ + + K K KKK
Sbjct: 122 KEEEAKELVAEIDASIAEAKSAAKGKKK 149
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional.
Length = 209
Score = 28.2 bits (63), Expect = 5.8
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 6 RLKTKKKKKKKKKK------EEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
R K+ + K K +K KK K +K KK KKKK K
Sbjct: 157 RAKSPRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKKKTK 208
>gnl|CDD|218391 pfam05029, TIMELESS_C, Timeless protein C terminal region. The
timeless (tim) gene is essential for circadian function
in Drosophila. Putative homologues of Drosophila tim
have been identified in both mice and humans (mTim and
hTIM, respectively). Mammalian TIM is not the true
orthologue of Drosophila TIM, but is the likely
orthologue of a fly gene, timeout (also called tim-2).
mTim has been shown to be essential for embryonic
development, but does not have substantiated circadian
function. Some family members contain a SANT domain in
this region.
Length = 507
Score = 28.5 bits (63), Expect = 5.8
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 13 KKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+K ++++ +++ EEE+K KKK+ +K K++
Sbjct: 409 RKNARQRKAGLASPEEEALGEEEQKAPPKKKQLNQKNKQQT 449
Score = 28.1 bits (62), Expect = 7.8
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
+K +++K +++ +EE+K KKK+ +K K+
Sbjct: 409 RKNARQRKAGLASPEEEALGEEEQKAPPKKKQLNQKNKQ 447
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is
a family of conserved fungal proteins of unknown
function.
Length = 169
Score = 27.8 bits (62), Expect = 5.9
Identities = 7/51 (13%), Positives = 21/51 (41%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
EG + + +K+ +++ +++K + K++K K +
Sbjct: 77 AEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDPR 127
Score = 27.4 bits (61), Expect = 7.8
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
+ +KE +++ +K+K +K++K K + +
Sbjct: 94 GESSADRKEAEQQGAAQKRKSCRDKERKSAKDPRGGTQ 131
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 28.3 bits (64), Expect = 6.0
Identities = 7/33 (21%), Positives = 22/33 (66%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEE 35
L+ L + + +++EE+++++++++ EEE
Sbjct: 288 LKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
>gnl|CDD|211393 cd11381, NSA2, pre-ribosomal protein NSA2 (Nop seven-associated
2). NSA2 appears to be a protein required for the
maturation of 27S pre-rRNA in yeast; it has been
characterized in mammalian cells as a nucleolar protein
that might play a role in the regulation of the cell
cycle and in cell proliferation.
Length = 257
Score = 28.4 bits (64), Expect = 6.0
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 13/60 (21%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKK-------------KKKKKEEEKKKKKKKKKKKKKKKKR 52
RL +++K+KK+ +E K+ KK KK+ KE+ + KK K +++ K++
Sbjct: 14 RLDHEERKRKKEAREPHKRSKKAQKLRGLKAKLYNKKRYKEKIQMKKTIKMHEERNVKQK 73
>gnl|CDD|220496 pfam09972, DUF2207, Predicted membrane protein (DUF2207). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 503
Score = 28.5 bits (64), Expect = 6.0
Identities = 18/49 (36%), Positives = 23/49 (46%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
LK KKKK+K K K KK +K K+E +K + K L L
Sbjct: 352 LKEIKKKKQKSKSFAKAFKKWQKSVKKEADRKGLFDNYRYLKMGSLLGL 400
>gnl|CDD|225123 COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC
component [Carbohydrate transport and metabolism].
Length = 472
Score = 28.4 bits (64), Expect = 6.1
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 7 LKTKKKKKKK------KKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
LKT K + + K +E K + K + K KK
Sbjct: 335 LKTSKTESEDDLEAATAKMKEMKGESKGQSSALAADVKNDLSNVKK 380
>gnl|CDD|217162 pfam02645, DegV, Uncharacterized protein, DegV family COG1307. The
structure of this protein revealed a bound fatty-acid
molecule in a pocket between the two protein domains.
The structure indicates that this family has the
molecular function of fatty-acid binding and may play a
role in the cellular functions of fatty acid transport
or metabolism.
Length = 211
Score = 28.0 bits (63), Expect = 6.2
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 8/68 (11%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKK--------KKKKKKKKKKKKRLYL 55
+G L K + KK K+ + KK E K + ++ + K+ K Y
Sbjct: 123 DGGLVPLAKVRGGKKAAIKRLLEILLKKLAEGKGYRVAIIHANEEEAAELLKELLKAKYP 182
Query: 56 PTSIPLSH 63
I +S
Sbjct: 183 IVDISISE 190
>gnl|CDD|220719 pfam10368, YkyA, Putative cell-wall binding lipoprotein. YkyA is a
family of proteins containing a lipoprotein signal and a
hydrolase domain. It is similar to cell wall binding
proteins and might also be recognisable by a host immune
defence system. It is thus likely to belong to pathways
important for pathogenicity.
Length = 205
Score = 28.1 bits (63), Expect = 6.3
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK+K+ +K EE+ K KK +K E+KK KKK K+ K K+R
Sbjct: 86 KKEKESIEKSEEEFKSAKKYIEKIEDKKLKKKAKQLVKVMKER 128
>gnl|CDD|215525 PLN02972, PLN02972, Histidyl-tRNA synthetase.
Length = 763
Score = 28.3 bits (63), Expect = 6.4
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 28 KKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPL 61
K + + E + K KK KK KKKK L TS L
Sbjct: 235 KPQAEAENEAGKSDKKDKKSKKKKVLGKGTSAVL 268
Score = 27.9 bits (62), Expect = 8.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 27 KKKKKKEEEKKKKKKKKKKKKKKK 50
K + + E E K KK KK KKKK
Sbjct: 235 KPQAEAENEAGKSDKKDKKSKKKK 258
>gnl|CDD|131972 TIGR02926, AhaH, ATP synthase archaeal, H subunit. he A1/A0 ATP
synthase is homologous to the V-type (V1/V0, vacuolar)
ATPase, but functions in the ATP synthetic direction as
does the F1/F0 ATPase of bacteria. The hydrophilic A1
"stalk" complex (AhaABCDEFG) is the site of ATP
generation and is coupled to the membrane-embedded
proton translocating A0 complex. It is unclear
precisely where AhaH fits into these complexes.
Length = 85
Score = 26.7 bits (59), Expect = 6.4
Identities = 9/51 (17%), Positives = 31/51 (60%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
E R + ++ ++ +++ K ++ K+ +EE +K+ +K +++ +K+ + +
Sbjct: 27 AEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIEAM 77
Score = 26.3 bits (58), Expect = 8.1
Identities = 8/47 (17%), Positives = 29/47 (61%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKK 50
E ++ ++++K++ E +++ ++ ++ EEE K ++ K+ +++
Sbjct: 12 EELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEE 58
Score = 26.3 bits (58), Expect = 8.4
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
K ++ K+ EE+ +K+ +K ++E EK+ + K K K+K
Sbjct: 46 KLGEEIIKEAEEEIEKEAEKIREEGEKEIEAMKSKAKEK 84
>gnl|CDD|238706 cd01418, Ribosomal_L19e_A, Ribosomal protein L19e, archaeal. L19e
is found in the large ribosomal subunit of eukaryotes
and archaea. L19e is distinct from the ribosomal subunit
L19, which is found in prokaryotes. It consists of two
small globular domains connected by an extended segment.
It is located toward the surface of the large subunit,
with one exposed end involved in forming the
intersubunit bridge with the small subunit. The other
exposed end is involved in forming the translocon
binding site, along with L22, L23, L24, L29, and L31e
subunits.
Length = 145
Score = 27.3 bits (61), Expect = 6.5
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKK 67
K K KK + K++ +K+KK +K KK + KK ++ T L Y K+
Sbjct: 48 KAKPKKGISRGRLKERHEKRKKGRRRGPGSRKGKKGARTPKKERWIKTIRALRRYLKE 105
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 28.5 bits (64), Expect = 6.6
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K K+++K + + + E K+K +K K K+K K+L
Sbjct: 235 KNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKL 278
>gnl|CDD|215929 pfam00458, WHEP-TRS, WHEP-TRS domain.
Length = 56
Score = 25.7 bits (57), Expect = 6.6
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
+LK KK K+ KK KK+ KE+ K K
Sbjct: 14 KLKAKKAPKEDVDAAVKKLLALKKQYKEKTGKDYKPGCPADPA 56
>gnl|CDD|221893 pfam13010, pRN1_helical, Primase helical domain. This alpha
helical domain is found in a set of bacterial plasmid
replication proteins. The domain is found to the
C-terminus of the primase/polymerase domain. Mutants of
this domain are defective in template binding,
dinucleotide formation and conformation change prior to
DNA extension.
Length = 135
Score = 27.5 bits (61), Expect = 6.6
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKK-----KEEEKKKKKKKKKKKKKKKKRLY 54
+ ++ +K KEE K + K K +EE KK KK ++ K+KKK +
Sbjct: 6 EEDSEEDFEKLKEEMAKYDRFKGKTVEAIREEVCKKIKKSLEELKEKKKAIL 57
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function
(DUF874). This family consists of several hypothetical
proteins specific to Helicobacter pylori. The function
of this family is unknown.
Length = 417
Score = 28.3 bits (62), Expect = 6.6
Identities = 12/45 (26%), Positives = 32/45 (71%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ K +++K+K ++E + + K E+EK+K +++K+K +++K++
Sbjct: 155 EQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQK 199
>gnl|CDD|131526 TIGR02473, flagell_FliJ, flagellar export protein FliJ. Members of
this family are the FliJ protein found, in nearly every
case, in the midst of other flagellar biosynthesis genes
in bacgterial genomes. Typically the fliJ gene is found
adjacent to the gene for the flagellum-specific ATPase
FliI. Sequence scoring in the gray zone between trusted
and noise cutoffs include both probable FliJ proteins
and components of bacterial type III secretion systems.
Length = 141
Score = 27.3 bits (61), Expect = 6.8
Identities = 9/46 (19%), Positives = 31/46 (67%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+++ + K+++ + +++ K +K +EKK+K+ + ++ K+++K +
Sbjct: 86 LLQQEVEAKRERLLEARRELKALEKLKEKKQKEYRAEEAKREQKEM 131
>gnl|CDD|225887 COG3351, FlaD, Putative archaeal flagellar protein D/E [Cell
motility and secretion].
Length = 214
Score = 27.9 bits (62), Expect = 6.9
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKK-----KEEEKKKKKKKKKKKKKKKKRLYLPTSIPL 61
L + KK + EE ++ ++ K+ K + +++ +K+K +K + S
Sbjct: 30 LPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEKLKEPAQMSSTS 89
Query: 62 SHYFKKAHM 70
KKA +
Sbjct: 90 EEEEKKAKL 98
>gnl|CDD|225816 COG3277, GAR1, RNA-binding protein involved in rRNA processing
[Translation, ribosomal structure and biogenesis].
Length = 98
Score = 26.6 bits (59), Expect = 6.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 11 KKKKKKKKKEEKKKKKKKKKK 31
K +KK+K +KK++ KK K
Sbjct: 78 DKLIRKKRKLPRKKRRPKKPK 98
Score = 26.6 bits (59), Expect = 8.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKK 30
+ K +KK+K KK++ KK K
Sbjct: 75 IPPDKLIRKKRKLPRKKRRPKKPK 98
Score = 26.6 bits (59), Expect = 8.5
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 8 KTKKKKKKKKKKEEKK-----KKKKKKKKKEEEKKKKKKKKK 44
K + K + K +KK+K KK++ KK K
Sbjct: 57 KPDDRDVKLESLVGDTLYIPPDKLIRKKRKLPRKKRRPKKPK 98
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 28.2 bits (63), Expect = 7.0
Identities = 9/49 (18%), Positives = 17/49 (34%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
G K + K+++ K K++ + + KKK L
Sbjct: 28 GMNKVIELKRERAADRRGDKSGKEELTIVGKHSTIEGAKKKAHVNGVFL 76
>gnl|CDD|206687 cd01900, YchF, YchF GTPase. YchF is a member of the Obg family,
which includes four other subfamilies of GTPases: Obg,
DRG, Ygr210, and NOG1. Obg is an essential gene that is
involved in DNA replication in C. crescentus and
Streptomyces griseus and is associated with the
ribosome. Several members of the family, including YchF,
possess the TGS domain related to the RNA-binding
proteins. Experimental data and genomic analysis suggest
that YchF may be part of a nucleoprotein complex and may
function as a GTP-dependent translational factor.
Length = 274
Score = 27.8 bits (63), Expect = 7.0
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKE--EEKKKKKKKKKKKKKKK--KRLYLPT 57
++E RL+ +KK K KE K++ + +K KE EE K + + ++ K K L L T
Sbjct: 135 TIEKRLERLEKKAKSGDKEAKEELELLEKIKEHLEEGKPARTLELTDEEIKILKSLQLLT 194
Query: 58 SIP 60
+ P
Sbjct: 195 AKP 197
>gnl|CDD|218847 pfam05995, CDO_I, Cysteine dioxygenase type I. Cysteine
dioxygenase type I (EC:1.13.11.20) converts cysteine to
cysteinesulphinic acid and is the rate-limiting step in
sulphate production.
Length = 170
Score = 27.5 bits (61), Expect = 7.0
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 134 ANSWNDHWGDHGTFKILRGE 153
+DH G HG K+L GE
Sbjct: 82 GTGVHDHGGSHGALKVLEGE 101
>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in
Phosphoinositide-specific phospholipases C (PLC). PLCs
are involved in the hydrolysis of
phosphatidylinositol-4,5-bisphosphate (PIP2) to
d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and
sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are
second messengers in eukaryotic signal transduction
cascades. PLC is composed of a N-terminal PH domain
followed by a series of EF hands, a catalytic TIM barrel
and a C-terminal C2 domain. C2 domains fold into an
8-standed beta-sandwich that can adopt 2 structural
arrangements: Type I and Type II, distinguished by a
circular permutation involving their N- and C-terminal
beta strands. Many C2 domains are Ca2+-dependent
membrane-targeting modules that bind a wide variety of
substances including bind phospholipids, inositol
polyphosphates, and intracellular proteins. Most C2
domain proteins are either signal transduction enzymes
that contain a single C2 domain, such as protein kinase
C, or membrane trafficking proteins which contain at
least two C2 domains, such as synaptotagmin 1. However,
there are a few exceptions to this including RIM
isoforms and some splice variants of piccolo/aczonin and
intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members here have a type-II
topology.
Length = 128
Score = 27.1 bits (61), Expect = 7.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 308 KLKTPECKQNCYNPSYESTYRFDLK 332
K KT K N +NP + T+ FD+
Sbjct: 43 KFKTKVVKNNGFNPVWNETFEFDVT 67
>gnl|CDD|224859 COG1948, MUS81, ERCC4-type nuclease [DNA replication,
recombination, and repair].
Length = 254
Score = 28.1 bits (63), Expect = 7.1
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 30 KKKEEEKKKK----KKKKKKKKKKKKRLYLPTSIP 60
++E+E++K+ KKK K K+ +LY+ SIP
Sbjct: 154 ARREQEERKRSVNPHGKKKAKTLKELQLYILESIP 188
>gnl|CDD|153331 cd07647, F-BAR_PSTPIP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine
Phosphatase-Interacting Proteins. F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. Vetebrates contain two
Proline-Serine-Threonine Phosphatase-Interacting
Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are
mainly expressed in hematopoietic cells and are involved
in the regulation of cell adhesion and motility.
Mutations in PSTPIPs have been shown to cause
autoinflammatory disorders. PSTPIP1 contains an
N-terminal F-BAR domain, PEST motifs, and a C-terminal
SH3 domain, while PSTPIP2 contains only the N-terminal
F-BAR domain. F-BAR domains form banana-shaped dimers
with a positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 239
Score = 27.8 bits (62), Expect = 7.3
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
E + ++K+K+++KK E K+ +K KKE KK K KK ++K
Sbjct: 86 EAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQK 132
>gnl|CDD|148491 pfam06898, YqfD, Putative stage IV sporulation protein YqfD. This
family consists of several putative bacterial stage IV
sporulation (SpoIV) proteins. YqfD of Bacillus subtilis
is known to be essential for efficient sporulation
although its exact function is unknown.
Length = 383
Score = 28.1 bits (63), Expect = 7.4
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 21/65 (32%)
Query: 7 LKTKKKKKKKKKKEEKKKK---------------------KKKKKKKEEEKKKKKKKKKK 45
LK +K + +K KEE +K K K KEE +K KK KK
Sbjct: 284 LKFRKNEFEKYDKEEDEKPLFLKWKLPISIVRETYYEVQDKVVKLTKEEAVEKGKKLAKK 343
Query: 46 KKKKK 50
K +K+
Sbjct: 344 KLEKE 348
>gnl|CDD|218991 pfam06326, Vesiculo_matrix, Vesiculovirus matrix protein. This
family consists of several Vesiculovirus matrix
proteins. The matrix (M) protein of vesicular
stomatitis virus (VSV) expressed in the absence of
other viral components causes many of the cytopathic
effects of VSV, including an inhibition of host gene
expression and the induction of cell rounding. It has
been shown that M protein also induces apoptosis in the
absence of other viral components. It is thought that
the activation of apoptotic pathways causes the
inhibition of host gene expression and cell rounding by
M protein.
Length = 229
Score = 27.8 bits (62), Expect = 7.4
Identities = 11/40 (27%), Positives = 13/40 (32%)
Query: 26 KKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYF 65
K K K +E KK K KK P S +
Sbjct: 4 FKLLKLKGKEVASKKSKGSKKLNMSMDWDAPPSYEETRPG 43
>gnl|CDD|234659 PRK00137, rplI, 50S ribosomal protein L9; Reviewed.
Length = 147
Score = 27.4 bits (62), Expect = 7.4
Identities = 6/40 (15%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 14 KKKKKKE--EKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
+ K + K+ + ++ E E K ++ + + +K
Sbjct: 32 PQGKAVRATKGNLKQLEARRAELEAKAAEELAEAEALAEK 71
>gnl|CDD|220624 pfam10187, Nefa_Nip30_N, N-terminal domain of NEFA-interacting
nuclear protein NIP30. This is a the N-terminal 100
amino acids of a family of proteins conserved from
plants to humans. The full-length protein has
putatively been called NEFA-interacting nuclear protein
NIP30, however no reference could be found to confirm
this.
Length = 99
Score = 26.6 bits (59), Expect = 7.5
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 2 SLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEE----KKKKKKKKKKKKKKKKR 52
SL RL+ K KK+++ +E+ K K + + E+E + ++ ++ +KK+K+
Sbjct: 36 SLYERLQENKDKKQEEFEEKFKLKNQFRGLDEDEVEFLDEVEESRRAAEKKRKRE 90
>gnl|CDD|214368 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed.
Length = 1364
Score = 28.4 bits (64), Expect = 7.6
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 8/52 (15%)
Query: 6 RLKTKKKKKKKK--------KKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
R++ KKK+ + K E K + KK K+ KK K
Sbjct: 705 RIEKKKKRIELKIFSGDIHFPGETDKISRHSGILIPPGTGKKNSKESKKIKN 756
>gnl|CDD|233160 TIGR00869, sec62, protein translocation protein, Sec62 family.
Members of the NSCC2 family have been sequenced from
various yeast, fungal and animals species including
Saccharomyces cerevisiae, Drosophila melanogaster and
Homo sapiens. These proteins are the Sec62 proteins,
believed to be associated with the Sec61 and Sec63
constituents of the general protein secretary systems of
yeast microsomes. They are also the non-selective cation
(NS) channels of the mammalian cytoplasmic membrane. The
yeast Sec62 protein has been shown to be essential for
cell growth. The mammalian NS channel proteins has been
implicated in platelet derived growth factor(PGDF)
dependent single channel current in fibroblasts. These
channels are essentially closed in serum deprived
tissue-culture cells and are specifically opened by
exposure to PDGF. These channels are reported to exhibit
equal selectivity for Na+, K+ and Cs+ with low
permeability to Ca2+, and no permeability to anions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 232
Score = 28.0 bits (62), Expect = 7.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 30 KKKEEEKKKKKKKKKKKKKKKK 51
K K KKK K KK KKK+ K+
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKR 229
>gnl|CDD|218601 pfam05477, SURF2, Surfeit locus protein 2 (SURF2). Surfeit locus
protein 2 is part of a group of at least six sequence
unrelated genes (Surf-1 to Surf-6). The six Surfeit
genes have been classified as housekeeping genes, being
expressed in all tissue types tested and not containing
a TATA box in their promoter region. The exact function
of SURF2 is unknown.
Length = 244
Score = 28.0 bits (62), Expect = 7.6
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
T + + + + E ++K+ KK+ KK KK KKK +
Sbjct: 199 TDDEDEMEVESPELQQKRSKKQSGSLTKKFKKNHKKKGPFRFSS 242
>gnl|CDD|217754 pfam03836, RasGAP_C, RasGAP C-terminus.
Length = 139
Score = 27.2 bits (61), Expect = 7.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 24 KKKKKKKKKEEEKKKKKKKKKKKKKKK 50
KKKK K+K KK +KK KK K
Sbjct: 90 KKKKFSKQKFSVKKLQKKHGKKPKFGS 116
Score = 27.2 bits (61), Expect = 7.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 23 KKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KKKK K+K +K +KK KK K K
Sbjct: 90 KKKKFSKQKFSVKKLQKKHGKKPKFGSYKY 119
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 28.4 bits (64), Expect = 7.7
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
+L+ + + +KK E K ++ E+EK+K + + K K ++RL
Sbjct: 825 KLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVKLAKLEERL 872
>gnl|CDD|224237 COG1318, COG1318, Predicted transcriptional regulators
[Transcription].
Length = 182
Score = 27.5 bits (61), Expect = 7.8
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKK 46
++K + K+ EEK K + K + EE K + +
Sbjct: 130 KIKGEHFPMDKELLEEKLKGEVIKGEPLEEVIDKLEYPVES 170
>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078). This
family is found from fungi to humans, but its exact
function is not known.
Length = 88
Score = 26.5 bits (59), Expect = 7.9
Identities = 8/29 (27%), Positives = 25/29 (86%)
Query: 9 TKKKKKKKKKKEEKKKKKKKKKKKEEEKK 37
+++K+++++KE++K+ ++++KK EE++
Sbjct: 60 ERERKEREERKEKRKRAIEERRKKIEERR 88
Score = 26.1 bits (58), Expect = 9.5
Identities = 10/37 (27%), Positives = 29/37 (78%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK 43
L+ +++ ++++KE +++K+K+K+ EE +KK ++++
Sbjct: 52 LEKAREETERERKEREERKEKRKRAIEERRKKIEERR 88
>gnl|CDD|226946 COG4580, LamB, Maltoporin (phage lambda and maltose receptor)
[Carbohydrate transport and metabolism].
Length = 429
Score = 27.9 bits (62), Expect = 8.0
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 5/66 (7%)
Query: 88 AIFSVYADFLQYKSGVYQHNFGDSIGLHAVRVLGWGVENDIPYWLVAN-----SWNDHWG 142
S F S + + + G + VR++ G + W +A ND
Sbjct: 263 GYASQGTKFGSQGSDFNKRYYAINNGGNGVRLIDHGAISIGDNWDMAYVLMYRGGNDIGW 322
Query: 143 DHGTFK 148
D+
Sbjct: 323 DNKNTT 328
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 28.1 bits (63), Expect = 8.0
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKK 30
G +K ++ KK K E + + K K
Sbjct: 202 GAIKAIQEAKKNPKPEPRDPRLPKPK 227
>gnl|CDD|221324 pfam11933, DUF3451, Domain of unknown function (DUF3451). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 199 to 238 amino acids in length. This domain
is found associated with pfam06512, pfam00520. This
domain has a conserved ADD sequence motif.
Length = 222
Score = 27.4 bits (61), Expect = 8.3
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 29 KKKKEEEKKKKKKKKKK---KKKKKKRLYLPTSIPLSHYFKKAH 69
+ KE + K KK++ ++ P S +
Sbjct: 9 ESAKERRNRNDKNKKEEHSIGSEEGDSEKEPKSESADGRKRCRF 52
>gnl|CDD|225491 COG2940, COG2940, Proteins containing SET domain [General function
prediction only].
Length = 480
Score = 27.9 bits (62), Expect = 8.4
Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 11/85 (12%)
Query: 5 GRLKTKKKKKKKKKKEEKKKK----KKKKKKKEEEKKKKKKKKKKKKKKKKRLYLP---- 56
LK ++ KK+ + ++ + K + K K +L
Sbjct: 84 KFLKFNERSIIKKEVCQLLNVIPILIPEQNTIDSSVLGIAKDRCSKSKLWTPSFLILDAS 143
Query: 57 ---TSIPLSHYFKKAHMVPRCNAMR 78
+I LS Y
Sbjct: 144 LRYLTIKLSGYNINGKKEKAVIREN 168
>gnl|CDD|234032 TIGR02855, spore_yabG, sporulation peptidase YabG. Members of
this family are the protein YabG, demonstrated for
Bacillus subtilis to be an endopeptidase able to
release N-terminal peptides from a number of
sporulation proteins, including CotT, CotF, and SpoIVA.
It appears to be expressed under control of sigma-K
[Cellular processes, Sporulation and germination].
Length = 283
Score = 27.7 bits (62), Expect = 8.5
Identities = 9/45 (20%), Positives = 23/45 (51%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
+ ++KK+KK K++ + + ++ K K+KK+ + +
Sbjct: 51 LVDESERKKRKKRFKERMETSYRLFRQDYKLMKEKKEYRATGGYK 95
>gnl|CDD|218078 pfam04419, 4F5, 4F5 protein family. Members of this family are
short proteins that are rich in aspartate, glutamate,
lysine and arginine. Although the function of these
proteins is unknown, they are found to be ubiquitously
expressed.
Length = 38
Score = 24.9 bits (55), Expect = 8.6
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKK 43
++++ +++ KK KKKKK + + K K
Sbjct: 6 QREQARERNAKKAAKKKKKGAKSQLKAAAKAL 37
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 27.7 bits (62), Expect = 8.6
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 2 SLEGRLKTKKKK--KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKK------KKKKKKKRL 53
L++ K +K+K+ EE +++ ++ E KK + +K +++ R
Sbjct: 211 KARQELRSLSVKISEKRKQLEELQQELQELTIAIEALTNKKSELLEEIAEAEKIREECRG 270
Query: 54 YLPTSIP 60
+ I
Sbjct: 271 WSAKEIS 277
>gnl|CDD|233421 TIGR01453, grpIintron_endo, group I intron endonuclease. This
model represents one subfamily of endonucleases
containing the endo/excinuclease amino terminal domain,
pfam01541 at its amino end. A distinct subfamily
includes excinuclease abc subunit c (uvrC). Members of
pfam01541 are often termed GIY-YIG endonucleases after
conserved motifs near the amino end. This subfamily in
This model is found in open reading frames of group I
introns in both phage and mitochondria. The closely
related endonucleases of phage T4: segA, segB, segC,
segD and segE, score below the trusted cutoff for the
family.
Length = 214
Score = 27.3 bits (61), Expect = 8.8
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 5 GRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYL 55
G+ +++ K K K + + KK EE KKK +K+K KK
Sbjct: 121 GKTHSEETKAKISKNKLGENNPFFGKKHSEETKKKISEKEKGAKKVNVYDK 171
>gnl|CDD|226876 COG4470, COG4470, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 126
Score = 27.0 bits (60), Expect = 8.9
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 23 KKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K+ + + K EEE++ +K+ K K +K
Sbjct: 98 KRLRPQDIKFEEERQPTEKESPKSKSRKP 126
>gnl|CDD|217023 pfam02414, Borrelia_orfA, Borrelia ORF-A. This protein is encoded
by an open reading frame in plasmid borne DNA repeats of
Borrelia species. This protein is known as ORF-A. The
function of this putative protein is unknown.
Length = 285
Score = 27.7 bits (62), Expect = 8.9
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 14 KKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSI 59
KK K+E KKK K +K + +K KK K KK ++ L I
Sbjct: 140 NKKIKEESKKKNSKNIEKLKIKKYFKKCNFKTNLKKDIKIKLLKII 185
Score = 27.7 bits (62), Expect = 9.2
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKK---KKEEEKKKKKKKKKKKKKKKKRLY 54
+K + KKK K E+ K KK KK K +K K K K K ++ L
Sbjct: 143 IKEESKKKNSKNIEKLKIKKYFKKCNFKTNLKKDIKIKLLKIIKIEENFLI 193
>gnl|CDD|138835 PRK12279, PRK12279, 50S ribosomal protein L22/unknown domain fusion
protein; Provisional.
Length = 311
Score = 27.7 bits (61), Expect = 8.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K KK KK E K K + KK + K + K +K + + L
Sbjct: 123 KAKKSKKPLPVEPKAKVETKKVAKPSKVEVKPVEKDENVDPELL 166
>gnl|CDD|220633 pfam10214, Rrn6, RNA polymerase I-specific transcription-initiation
factor. RNA polymerase I-specific
transcription-initiation factor Rrn6 and Rrn7 represent
components of a multisubunit transcription factor
essential for the initiation of rDNA transcription by
Pol I. These proteins are found in fungi.
Length = 753
Score = 28.2 bits (63), Expect = 9.0
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 5 GRLKTKKKKKKKKK 18
GR +KKKKKKK+K
Sbjct: 737 GRSASKKKKKKKRK 750
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 27.7 bits (62), Expect = 9.0
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 6 RLKTKKKKK----KKKKKEEKKKKKKKKKKKEEEKKKKKKK------KKKKKKKKKRLYL 55
+ K KK + K KK EE +++ ++ + K E+ KK + + +KK ++ R +
Sbjct: 210 KEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFT 269
Query: 56 PTSIPL 61
I
Sbjct: 270 FKEIEK 275
>gnl|CDD|218300 pfam04870, Moulting_cycle, Moulting cycle. This family of
proteins plays a role in the moulting cycle of
nematodes, which involves the synthesis of a new
collagen-rich cuticle underneath the existing cuticle
and the subsequent removal of the old cuticle.
Length = 323
Score = 27.8 bits (62), Expect = 9.1
Identities = 11/59 (18%), Positives = 28/59 (47%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPL 61
+ L + K K+ + K + ++ K+E ++ K+KK+ + + +K+ + L
Sbjct: 5 IAKTLTEIVRAPKNKEPKSKWQDTIQRIKRESKRIKQKKEMESRYRKRFSKFQRAMFGL 63
>gnl|CDD|147641 pfam05582, Peptidase_U57, YabG peptidase U57. YabG is a protease
involved in the proteolysis and maturation of SpoIVA
and YrbA proteins, conserved with the cortex and/or
coat assembly by Bacillus subtilis.
Length = 287
Score = 27.5 bits (62), Expect = 9.2
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 16 KKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLY 54
K E + KK+ ++K E K ++ +K ++K+
Sbjct: 52 KVDASEVTRYKKRFEEKINESLKLIRQDRKLMREKQEYR 90
>gnl|CDD|238288 cd00520, RRF, Ribosome recycling factor (RRF). Ribosome recycling
factor dissociates the posttermination complex, composed
of the ribosome, deacylated tRNA, and mRNA, after
termination of translation. Thus ribosomes are
"recycled" and ready for another round of protein
synthesis. RRF is believed to bind the ribosome at the
A-site in a manner that mimics tRNA, but the specific
mechanisms remain unclear. RRF is essential for
bacterial growth. It is not necessary for cell growth
in archaea or eukaryotes, but is found in mitochondria
or chloroplasts of some eukaryotic species.
Length = 179
Score = 27.2 bits (61), Expect = 9.2
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 13/62 (20%)
Query: 1 MSLEGRLKTKKKKKKK-------------KKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
++ E R + K KK ++ KK +K+K+ E+E KK ++ +K
Sbjct: 101 LTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLT 160
Query: 48 KK 49
+
Sbjct: 161 DE 162
>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain.
Length = 225
Score = 27.4 bits (61), Expect = 9.3
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 10/52 (19%)
Query: 11 KKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK----------KKKKKKKKKKR 52
+K ++++ +++ + +KKKEE +K +K +KK+K K + R
Sbjct: 115 RKWRERRDLRIEERDEASEKKKEELIEKAQKEIDDFYENYNEKKEKTKAQNR 166
>gnl|CDD|227038 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 28.0 bits (62), Expect = 9.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR 52
KK +KK K E + K ++++KEE+ + KK ++R
Sbjct: 128 NKKNEKKIKNEASLQVKTQREEKEEKDFIADCWRNLYKKNEER 170
Score = 28.0 bits (62), Expect = 9.9
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 10 KKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
++++K++K + KK EE K+ + K+KK K+K
Sbjct: 145 TQREEKEEKDFIADCWRNLYKKNEERFKEYLENFKRKKFKRK 186
>gnl|CDD|187859 cd09728, Csx1_III-U, CRISPR/Cas system-associated protein Csx1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Protein of this family often fused to HTH domain; Some
proteins could have an additional fusion with
RecB-family nuclease domain; Core domain appears to have
a Rossmann-like fold; loosely associated with CRISPR/Cas
systems; also known as DxTHG family.
Length = 400
Score = 27.7 bits (62), Expect = 9.4
Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 8/72 (11%)
Query: 6 RLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKR--------LYLPT 57
+ + + E K+K K ++ K K+ KK + LY
Sbjct: 182 NIHEIESETIAPVTEISYLKEKFINKYKDNNKDLKRYFKKALNEGLEKIIKFASALYNGL 241
Query: 58 SIPLSHYFKKAH 69
+ L +
Sbjct: 242 PLYLLYLKPSIE 253
>gnl|CDD|219392 pfam07382, HC2, Histone H1-like nucleoprotein HC2. This family
contains the bacterial histone H1-like nucleoprotein
HC2 (approximately 200 residues long), which seems to
be found mostly in Chlamydia. HC2 functions in DNA
condensation, although it has been suggested that it
also has other roles.
Length = 187
Score = 27.4 bits (60), Expect = 9.4
Identities = 17/41 (41%), Positives = 18/41 (43%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
KT KK KK KK KK K+ KK KK KK
Sbjct: 47 KTVAKKTVAAKKPAAKKAAKKAVAKKVVAKKPVAKKAVAKK 87
>gnl|CDD|218396 pfam05039, Agouti, Agouti protein. The agouti protein regulates
pigmentation in the mouse hair follicle producing a
black hair with a subapical yellow band. A highly
homologous protein agouti signal protein (ASIP)is
present in humans and is expressed at highest levels in
adipose tissue where it may play a role in energy
homeostasis and possibly human pigmentation.
Length = 90
Score = 26.4 bits (58), Expect = 9.4
Identities = 15/54 (27%), Positives = 22/54 (40%)
Query: 22 KKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRLYLPTSIPLSHYFKKAHMVPRCN 75
K KK K + EE+KK KK+ + + + R P H P C+
Sbjct: 18 KGLKKFNKNEAEEKKKSSKKEAEALTEAQGRPPPPRRCVRLHESCLGPQTPCCD 71
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 28.0 bits (63), Expect = 9.4
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 4 EGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKK 49
E R + ++ +++ ++EE +K + K+EE +KK+K+ K+K
Sbjct: 73 ERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEK 118
>gnl|CDD|131623 TIGR02572, LcrR, type III secretion system regulator LcrR. This
protein is found in type III secretion operons and has
been characterized in Yersinia as a regulator of the
Low-Calcium Respone (LCR).
Length = 139
Score = 27.1 bits (60), Expect = 9.5
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 243 QHIVACTPNCWGCNGGWPQLAWRFWGH 269
+ + TP+C QL WR
Sbjct: 11 ETGLEVTPHCLQ--KSPIQLGWRVEVD 35
>gnl|CDD|201540 pfam00992, Troponin, Troponin. Troponin (Tn) contains three
subunits, Ca2+ binding (TnC), inhibitory (TnI), and
tropomyosin binding (TnT). this Pfam contains members of
the TnT subunit. Troponin is a complex of three
proteins, Ca2+ binding (TnC), inhibitory (TnI), and
tropomyosin binding (TnT). The troponin complex
regulates Ca++ induced muscle contraction. This family
includes troponin T and troponin I. Troponin I binds to
actin and troponin T binds to tropomyosin.
Length = 131
Score = 26.7 bits (60), Expect = 9.6
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 6 RLKTKKKKKKKKKKEEKKKK--KKKKKKKEEEKKKKK--KKKKKKKK---KKKRLY 54
L K + + EE+ K KK KE E KKK + K KK KK R
Sbjct: 49 ELCKKLHARIDRLDEERYDIEEKVAKKDKEIEDLKKKVNDLRGKFKKPTLKKVRKS 104
>gnl|CDD|234605 PRK00059, prsA, peptidylprolyl isomerase; Provisional.
Length = 336
Score = 27.8 bits (62), Expect = 9.7
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 12 KKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKK 47
K+ KK+ ++K+ + KKK EE KK K KK +K
Sbjct: 299 KEDIKKQLLQEKQSEVFKKKIEEWKKALKVKKYEKN 334
>gnl|CDD|147685 pfam05663, DUF809, Protein of unknown function (DUF809). This
family consists of several proteins of unknown function
Raphanus sativus (Radish) and Brassica napus (Rape).
Length = 138
Score = 27.1 bits (59), Expect = 9.8
Identities = 15/46 (32%), Positives = 32/46 (69%)
Query: 3 LEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKK 48
++G ++ K++KK+ K + E K++KK+ K + E K++KK+ + +K
Sbjct: 93 IKGEIEGKEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKEVENGPRK 138
>gnl|CDD|226138 COG3611, DnaB, Replication initiation/membrane attachment protein
[DNA replication, recombination, and repair].
Length = 417
Score = 27.7 bits (62), Expect = 9.9
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 8 KTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKK 51
K + K+K+ K + KK +E++ K + K ++ K+
Sbjct: 367 KKQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFIKLEELKRL 410
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 27.9 bits (62), Expect = 9.9
Identities = 13/41 (31%), Positives = 30/41 (73%)
Query: 1 MSLEGRLKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKK 41
+ +EG K+ K+KK++K+E+K ++ K ++ +EE ++++K
Sbjct: 268 LGIEGWDWLKELKEKKEEKDEEKSEEVKTEEVDEEFEEEEK 308
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 27.8 bits (62), Expect = 10.0
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 7 LKTKKKKKKKKKKEEKKKKKKKKKKKEEEKKKKKKKKKKKKKKKKRL 53
K E + +K K++ ++K K K K++ + +L
Sbjct: 907 FYDDLALNGGKLPENGTELVEKLAKEKSLREKNKDDWKAKEEVEAKL 953
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.431
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,138,726
Number of extensions: 1648549
Number of successful extensions: 30516
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18721
Number of HSP's successfully gapped: 3281
Length of query: 342
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 244
Effective length of database: 6,590,910
Effective search space: 1608182040
Effective search space used: 1608182040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.6 bits)