BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1912
(77 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q16QL3|COQ2_AEDAE 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Aedes
aegypti GN=coq2 PE=3 SV=1
Length = 441
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 46/61 (75%), Gaps = 2/61 (3%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIH--LIDLCENGVN 58
MTFN+GAL+G+SA G V WS CLPLY++G+CWTI+YDTIYAHQ ++ L+ + +
Sbjct: 256 MTFNWGALLGWSATQGSVMWSACLPLYVAGVCWTIVYDTIYAHQDKVDDALLGIKSTAIR 315
Query: 59 F 59
F
Sbjct: 316 F 316
>sp|Q9VHS7|COQ2_DROME 4-hydroxybenzoate polyprenyltransferase, mitochondrial
OS=Drosophila melanogaster GN=Coq2 PE=2 SV=1
Length = 392
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/47 (63%), Positives = 39/47 (82%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRI 47
M FN+GAL+G+ A G V+ + CLPLYLSG+CWTI+YDTIYAHQ ++
Sbjct: 217 MAFNWGALLGWCATQGSVNLAACLPLYLSGVCWTIVYDTIYAHQDKL 263
>sp|Q298G6|COQ2_DROPS 4-hydroxybenzoate polyprenyltransferase, mitochondrial
OS=Drosophila pseudoobscura pseudoobscura GN=coq2 PE=3
SV=1
Length = 397
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/47 (63%), Positives = 39/47 (82%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRI 47
M FN+GAL+G+ A G V+ + CLPLYLSG+CWTI+YDTIYAHQ ++
Sbjct: 223 MAFNWGALLGWCATQGSVNLAACLPLYLSGVCWTIVYDTIYAHQDKL 269
>sp|Q2KIQ4|COQ2_BOVIN 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Bos
taurus GN=COQ2 PE=2 SV=1
Length = 371
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 38/44 (86%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQ 44
+TFN+GAL+G+SAV G D S+CLPLY SGI WT+IYDTIYAHQ
Sbjct: 211 LTFNWGALLGWSAVKGSCDPSVCLPLYFSGIMWTLIYDTIYAHQ 254
>sp|Q499N4|COQ2_RAT 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Rattus
norvegicus GN=Coq2 PE=2 SV=1
Length = 374
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/44 (68%), Positives = 38/44 (86%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQ 44
+TFN+GAL+G+SAV G D ++CLPLY SG+ WT+IYDTIYAHQ
Sbjct: 211 LTFNWGALLGWSAVKGSCDPAVCLPLYFSGVMWTLIYDTIYAHQ 254
>sp|Q66JT7|COQ2_MOUSE 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Mus
musculus GN=Coq2 PE=2 SV=2
Length = 374
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/44 (68%), Positives = 38/44 (86%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQ 44
+TFN+GAL+G+SAV G D ++CLPLY SG+ WT+IYDTIYAHQ
Sbjct: 211 LTFNWGALLGWSAVKGSCDPAVCLPLYFSGVMWTLIYDTIYAHQ 254
>sp|Q54U71|COQ2_DICDI 4-hydroxybenzoate polyprenyltransferase, mitochondrial
OS=Dictyostelium discoideum GN=coq2 PE=3 SV=1
Length = 463
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIH--LIDLCENGVN 58
+ FN+GAL GYSA+ G +WS+ PLYL+GI WT++YDTIYAHQ + L+ + +
Sbjct: 309 LAFNWGALAGYSAIAGSCNWSIVAPLYLAGISWTMVYDTIYAHQDKRDDILVGVKSTALK 368
Query: 59 FISKS 63
F KS
Sbjct: 369 FAEKS 373
>sp|Q96H96|COQ2_HUMAN 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Homo
sapiens GN=COQ2 PE=1 SV=1
Length = 371
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIH--LIDLCENGVN 58
+TFN+GAL+G+SA+ G D S+CLPLY SG+ WT+IYDTIYAHQ + LI L +
Sbjct: 211 LTFNWGALLGWSAIKGSCDPSVCLPLYFSGVMWTLIYDTIYAHQDKRDDVLIGLKSTALR 270
Query: 59 F 59
F
Sbjct: 271 F 271
>sp|Q93YP7|4HPT_ARATH 4-hydroxybenzoate polyprenyltransferase, mitochondrial
OS=Arabidopsis thaliana GN=PPT1 PE=2 SV=1
Length = 407
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/44 (63%), Positives = 38/44 (86%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQ 44
+T N+GAL+G++AV G + S+ LPLYLSG+CWT++YDTIYAHQ
Sbjct: 264 LTINWGALLGWTAVKGSIAPSIVLPLYLSGVCWTLVYDTIYAHQ 307
>sp|Q10252|COQ2_SCHPO 4-hydroxybenzoate polyprenyltransferase, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=coq2 PE=1 SV=2
Length = 360
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/46 (58%), Positives = 36/46 (78%), Gaps = 2/46 (4%)
Query: 1 MTFNYGALMGYSAVTG--CVDWSLCLPLYLSGICWTIIYDTIYAHQ 44
+TF YGA+MG+ A+ G C++WS+ PLYLS I W ++YDTIYAHQ
Sbjct: 208 LTFGYGAVMGWPALAGEACMNWSVVAPLYLSTISWIVLYDTIYAHQ 253
>sp|P32378|COQ2_YEAST 4-hydroxybenzoate polyprenyltransferase, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=COQ2 PE=1 SV=1
Length = 372
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 3 FNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQ 44
FN+GAL+G+ A+ G + W +PLYLS W + YDTIYAHQ
Sbjct: 225 FNWGALLGFPAM-GVMSWPTMIPLYLSSYLWCMTYDTIYAHQ 265
>sp|Q8W405|PGT1_LITER 4-hydroxybenzoate geranyltransferase 1 OS=Lithospermum
erythrorhizon GN=PGT-1 PE=1 SV=1
Length = 307
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 33/44 (75%)
Query: 4 NYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRI 47
++GAL+G SA+ G V S+ PLY+S WT++YDTIYAHQ ++
Sbjct: 167 SWGALLGSSALKGSVVPSIAYPLYISSFFWTLVYDTIYAHQDKV 210
>sp|Q8W404|PGT2_LITER 4-hydroxybenzoate geranyltransferase 2 OS=Lithospermum
erythrorhizon GN=PGT-2 PE=1 SV=1
Length = 306
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 33/44 (75%)
Query: 4 NYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRI 47
++GAL+G SA+ G V S+ PLY+S WT++YDTIYAHQ ++
Sbjct: 166 SWGALLGSSALKGSVVPSIAYPLYISSFFWTLVYDTIYAHQDKV 209
>sp|Q8I7J4|COQ2_CAEEL 4-hydroxybenzoate polyprenyltransferase, mitochondrial
OS=Caenorhabditis elegans GN=coq-2 PE=2 SV=2
Length = 356
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVR 46
+TFN+GAL+G+ A+ G + S +Y + + WT+IYDTIYAHQ +
Sbjct: 202 LTFNWGALLGWCALKGDLSSSAPFWMYAAALQWTLIYDTIYAHQDK 247
>sp|B0U042|UBIA_FRAP2 4-hydroxybenzoate octaprenyltransferase OS=Francisella philomiragia
subsp. philomiragia (strain ATCC 25017) GN=ubiA PE=3
SV=1
Length = 285
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVR 46
+ FN+G M +SA+ + + YLS ICWTI YDTIYA R
Sbjct: 145 LAFNFGIFMAFSAIENQIPLEAWI-FYLSTICWTIAYDTIYALADR 189
>sp|A0Q4X3|UBIA_FRATN 4-hydroxybenzoate octaprenyltransferase OS=Francisella tularensis
subsp. novicida (strain U112) GN=ubiA PE=3 SV=1
Length = 284
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVR 46
+ FN+G M +SA+ + + YL+ ICWTI YDTIYA R
Sbjct: 144 LAFNFGIFMAFSAIQNQIPVEAWI-FYLATICWTIAYDTIYALADR 188
>sp|A4IYU3|UBIA_FRATW 4-hydroxybenzoate octaprenyltransferase OS=Francisella tularensis
subsp. tularensis (strain WY96-3418) GN=ubiA PE=3 SV=1
Length = 289
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVR 46
+ FN+G M +SA+ + + Y++ ICWTI YDTIYA R
Sbjct: 144 LAFNFGIFMAFSAIQNQIPVEAWI-FYIATICWTIAYDTIYALADR 188
>sp|A7NA50|UBIA_FRATF 4-hydroxybenzoate octaprenyltransferase OS=Francisella tularensis
subsp. holarctica (strain FTNF002-00 / FTA) GN=ubiA PE=3
SV=1
Length = 289
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVR 46
+ FN+G M +SA+ + + Y++ ICWTI YDTIYA R
Sbjct: 144 LAFNFGIFMAFSAIQNQIPVEAWI-FYIATICWTIAYDTIYALADR 188
>sp|B2SF41|UBIA_FRATM 4-hydroxybenzoate octaprenyltransferase OS=Francisella tularensis
subsp. mediasiatica (strain FSC147) GN=ubiA PE=3 SV=1
Length = 284
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVR 46
+ FN+G M +SA+ + + Y++ ICWTI YDTIYA R
Sbjct: 144 LAFNFGIFMAFSAIQNQIPVEAWI-FYIATICWTIAYDTIYALADR 188
>sp|Q2A564|UBIA_FRATH 4-hydroxybenzoate octaprenyltransferase OS=Francisella tularensis
subsp. holarctica (strain LVS) GN=ubiA PE=3 SV=1
Length = 284
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVR 46
+ FN+G M +SA+ + + Y++ ICWTI YDTIYA R
Sbjct: 144 LAFNFGIFMAFSAIQNQIPVEAWI-FYIATICWTIAYDTIYALADR 188
>sp|Q0BNI0|UBIA_FRATO 4-hydroxybenzoate octaprenyltransferase OS=Francisella tularensis
subsp. holarctica (strain OSU18) GN=ubiA PE=3 SV=1
Length = 284
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVR 46
+ FN+G M +SA+ + + Y++ ICWTI YDTIYA R
Sbjct: 144 LAFNFGIFMAFSAIQNQIPVEAWI-FYIATICWTIAYDTIYALADR 188
>sp|Q5NGI4|UBIA_FRATT 4-hydroxybenzoate octaprenyltransferase OS=Francisella tularensis
subsp. tularensis (strain SCHU S4 / Schu 4) GN=ubiA PE=3
SV=1
Length = 284
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVR 46
+ FN+G M +S + + + Y++ ICWTI YDTIYA R
Sbjct: 144 LAFNFGIFMAFSTIQNQIPVEAWI-FYIATICWTIAYDTIYALADR 188
>sp|Q14HY6|UBIA_FRAT1 4-hydroxybenzoate octaprenyltransferase OS=Francisella tularensis
subsp. tularensis (strain FSC 198) GN=ubiA PE=3 SV=1
Length = 284
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVR 46
+ FN+G M +S + + + Y++ ICWTI YDTIYA R
Sbjct: 144 LAFNFGIFMAFSTIQNQIPVEAWI-FYIATICWTIAYDTIYALADR 188
>sp|Q4FR08|UBIA_PSYA2 4-hydroxybenzoate octaprenyltransferase OS=Psychrobacter arcticus
(strain DSM 17307 / 273-4) GN=ubiA PE=3 SV=1
Length = 307
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 3 FNYGALMGYSAVTGCVD-WSLCLPLYLSGICWTIIYDTIYA 42
F + M Y A+ G D W C L+L+ +CWT+ YDT YA
Sbjct: 159 FGWAIPMAYVAIQGAADIW--CWLLFLAYMCWTVAYDTQYA 197
>sp|B0U2A2|UBIA_XYLFM 4-hydroxybenzoate octaprenyltransferase OS=Xylella fastidiosa
(strain M12) GN=ubiA PE=3 SV=1
Length = 299
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGVNFI 60
+ F +G M ++A+ G V +L LY++ I WT YDT YA R D + G I
Sbjct: 158 LAFGWGIPMAFAAIQGKVP-TLAWLLYIANILWTTAYDTWYAMVDR---DDDIKMGAKSI 213
Query: 61 SKSITNIDNVNRGLPY 76
+ +D V +G+ Y
Sbjct: 214 AILFAELDLVVQGVLY 229
>sp|Q1Q996|UBIA_PSYCK 4-hydroxybenzoate octaprenyltransferase OS=Psychrobacter
cryohalolentis (strain K5) GN=ubiA PE=3 SV=1
Length = 307
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 3 FNYGALMGYSAVTGCVD-WSLCLPLYLSGICWTIIYDTIYA 42
F + M Y A+ G D W C L+L+ +CWT+ YDT YA
Sbjct: 159 FGWAIPMAYVAIQGAPDIW--CWLLFLAYMCWTVAYDTQYA 197
>sp|C5B704|UBIA_EDWI9 4-hydroxybenzoate octaprenyltransferase OS=Edwardsiella ictaluri
(strain 93-146) GN=ubiA PE=3 SV=1
Length = 287
Score = 35.4 bits (80), Expect = 0.092, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYA 42
M F + M Y+AV + S C L+ + ICWT+ YDT YA
Sbjct: 148 MAFGWSIPMAYAAVGESLPLS-CWLLFAANICWTVAYDTQYA 188
>sp|C4L7X6|UBIA_TOLAT 4-hydroxybenzoate octaprenyltransferase OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=ubiA PE=3 SV=1
Length = 286
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYA 42
M F++ M Y AV G + + L L+L+ + WTI YDT+YA
Sbjct: 147 MAFSWAIPMAYGAVVGQLTVTTWL-LFLANLVWTIAYDTMYA 187
>sp|Q48AL9|UBIA_COLP3 4-hydroxybenzoate octaprenyltransferase OS=Colwellia
psychrerythraea (strain 34H / ATCC BAA-681) GN=ubiA PE=3
SV=1
Length = 287
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 3 FNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYA 42
F++G +M +S G + L L+ + +CWTI YDT+YA
Sbjct: 149 FSWGMIMAFSEAQGEIPLVAWL-LFTANLCWTIAYDTMYA 187
>sp|C6DKC9|UBIA_PECCP 4-hydroxybenzoate octaprenyltransferase OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=ubiA PE=3
SV=1
Length = 287
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 3 FNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYA 42
F + M Y+AV+ + + C ++L+ ICWT+ YDT YA
Sbjct: 150 FGWSIPMAYAAVSESLP-ATCWMMFLAYICWTVAYDTQYA 188
>sp|Q6D9I8|UBIA_ERWCT 4-hydroxybenzoate octaprenyltransferase OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=ubiA PE=3 SV=1
Length = 287
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 3 FNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYA 42
F + M Y+AV+ + + C ++L+ ICWT+ YDT YA
Sbjct: 150 FGWSIPMAYAAVSESLP-ATCWMMFLAYICWTVAYDTQYA 188
>sp|Q8PDE8|UBIA_XANCP 4-hydroxybenzoate octaprenyltransferase OS=Xanthomonas campestris
pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=ubiA PE=3 SV=1
Length = 301
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYA 42
M F +G MG++AV G V L LY + I W YDT YA
Sbjct: 159 MAFGWGIPMGFAAVQGSVPL-LAWLLYAANILWATAYDTWYA 199
>sp|B0RMR4|UBIA_XANCB 4-hydroxybenzoate octaprenyltransferase OS=Xanthomonas campestris
pv. campestris (strain B100) GN=ubiA PE=3 SV=1
Length = 301
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYA 42
M F +G MG++AV G V L LY + I W YDT YA
Sbjct: 159 MAFGWGIPMGFAAVQGSVPL-LAWLLYAANILWATAYDTWYA 199
>sp|Q4UZN6|UBIA_XANC8 4-hydroxybenzoate octaprenyltransferase OS=Xanthomonas campestris
pv. campestris (strain 8004) GN=ubiA PE=3 SV=1
Length = 301
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYA 42
M F +G MG++AV G V L LY + I W YDT YA
Sbjct: 159 MAFGWGIPMGFAAVQGSVPL-LAWLLYAANILWATAYDTWYA 199
>sp|Q87F82|UBIA_XYLFT 4-hydroxybenzoate octaprenyltransferase OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=ubiA PE=3 SV=1
Length = 299
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGVNFI 60
+ F +G M ++A+ G V +L LY++ I WT YDT YA R D + G
Sbjct: 158 IAFGWGIPMAFAAIQGKVP-TLAWLLYVANILWTTAYDTWYAMVDR---DDDIKMGAKST 213
Query: 61 SKSITNIDNVNRGLPY 76
+ ++D V +G+ Y
Sbjct: 214 AILFADLDLVVQGVLY 229
>sp|B2I675|UBIA_XYLF2 4-hydroxybenzoate octaprenyltransferase OS=Xylella fastidiosa
(strain M23) GN=ubiA PE=3 SV=1
Length = 299
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGVNFI 60
+ F +G M ++A+ G V +L LY++ I WT YDT YA R D + G
Sbjct: 158 IAFGWGIPMAFAAIQGKVP-TLAWLLYVANILWTTAYDTWYAMVDR---DDDIKMGAKST 213
Query: 61 SKSITNIDNVNRGLPY 76
+ ++D V +G+ Y
Sbjct: 214 AILFADLDLVVQGVLY 229
>sp|Q9JV93|UBIA_NEIMA 4-hydroxybenzoate octaprenyltransferase OS=Neisseria meningitidis
serogroup A / serotype 4A (strain Z2491) GN=ubiA PE=3
SV=1
Length = 296
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 9/46 (19%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLP----LYLSGICWTIIYDTIYA 42
+ F++G M ++AV G V LP L+ + + WT+ YDT+YA
Sbjct: 153 LAFSFGIPMAFAAVAGNV-----LPQAWILFAANVLWTLAYDTVYA 193
>sp|Q9K083|UBIA_NEIMB 4-hydroxybenzoate octaprenyltransferase OS=Neisseria meningitidis
serogroup B (strain MC58) GN=ubiA PE=3 SV=1
Length = 296
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYA 42
+ F++G M ++AV G V + L+ + + WT+ YDT+YA
Sbjct: 153 LAFSFGIPMAFAAVAGNVPPQAWI-LFAANVLWTLAYDTVYA 193
>sp|O52366|UBIA_PROST 4-hydroxybenzoate octaprenyltransferase OS=Providencia stuartii
GN=ubiA PE=3 SV=1
Length = 288
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 3 FNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYA 42
F + MG+SAV+ + +C L+L I W++IYDT YA
Sbjct: 150 FGWSIPMGFSAVSESLPL-VCWVLFLVNILWSVIYDTQYA 188
>sp|A4Y0P0|UBIA_PSEMY 4-hydroxybenzoate octaprenyltransferase OS=Pseudomonas mendocina
(strain ymp) GN=ubiA PE=3 SV=1
Length = 296
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 3 FNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYA 42
F++G M ++A TG + L LY++ + WT+ YDT YA
Sbjct: 156 FSWGMPMAFTAETGSLPPEAWL-LYIANLLWTVAYDTYYA 194
>sp|Q5P5M0|UBIA_AROAE 4-hydroxybenzoate octaprenyltransferase OS=Aromatoleum aromaticum
(strain EbN1) GN=ubiA PE=3 SV=2
Length = 294
Score = 32.7 bits (73), Expect = 0.69, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYA 42
+ F +G MG++AV G V ++ L L+ I W + YDT YA
Sbjct: 149 IAFGFGIPMGFAAVQGEVP-AIAWLLLLANIFWAVAYDTEYA 189
>sp|A1TJR2|UBIA_ACIAC 4-hydroxybenzoate octaprenyltransferase OS=Acidovorax citrulli
(strain AAC00-1) GN=ubiA PE=3 SV=1
Length = 295
Score = 32.3 bits (72), Expect = 0.90, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYA 42
+ F+ G M ++AV G V L L L +CW + YDT YA
Sbjct: 153 VAFSMGIPMAFTAVGGAVPM-LAAWLVLGNLCWVLAYDTEYA 193
>sp|Q5QUP3|UBIA_IDILO 4-hydroxybenzoate octaprenyltransferase OS=Idiomarina loihiensis
(strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=ubiA PE=3
SV=1
Length = 283
Score = 32.3 bits (72), Expect = 1.00, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYA 42
+ F++G M ++A+ W + L+L+ I WT+ YDT YA
Sbjct: 142 IAFSFGIPMAFTALES-DQWFIAGLLFLANILWTVAYDTEYA 182
>sp|Q4ZLB4|UBIA_PSEU2 4-hydroxybenzoate octaprenyltransferase OS=Pseudomonas syringae pv.
syringae (strain B728a) GN=ubiA PE=3 SV=1
Length = 296
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 3 FNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYA 42
F++G M ++A TG + + L LY++ + WT+ YDT YA
Sbjct: 156 FSWGMPMAFTAETGELPAAAWL-LYIANLLWTVGYDTYYA 194
>sp|Q0AGZ9|UBIA_NITEC 4-hydroxybenzoate octaprenyltransferase OS=Nitrosomonas eutropha
(strain C91) GN=ubiA PE=3 SV=1
Length = 286
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCEN 55
+ F++G M ++A TG V L L L+ + W I YDT YA L+DL ++
Sbjct: 145 IAFSFGIPMAFAAQTGTVP-PLAWLLVLANLFWVIAYDTEYA------LVDLADD 192
>sp|Q87U39|UBIA_PSESM 4-hydroxybenzoate octaprenyltransferase OS=Pseudomonas syringae pv.
tomato (strain DC3000) GN=ubiA PE=3 SV=1
Length = 296
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 3 FNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYA 42
F++G M ++A TG + + L LY++ + WT+ YDT YA
Sbjct: 156 FSWGMPMAFTAETGELPAAAWL-LYIANLLWTVGYDTYYA 194
>sp|Q8PQD5|UBIA_XANAC 4-hydroxybenzoate octaprenyltransferase OS=Xanthomonas axonopodis
pv. citri (strain 306) GN=ubiA PE=3 SV=1
Length = 301
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYA 42
M F +G M ++AV G V L LY + I W YDT YA
Sbjct: 159 MAFGWGIPMAFAAVQGSVPL-LGWLLYAANILWATAYDTWYA 199
>sp|Q48BQ5|UBIA_PSE14 4-hydroxybenzoate octaprenyltransferase OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=ubiA PE=3 SV=1
Length = 296
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 3 FNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYA 42
F++G M ++A TG + + L LY++ + WT+ YDT YA
Sbjct: 156 FSWGMPMAFTAETGDLPAAAWL-LYIANLLWTVGYDTYYA 194
>sp|C3K4C4|UBIA_PSEFS 4-hydroxybenzoate octaprenyltransferase OS=Pseudomonas fluorescens
(strain SBW25) GN=ubiA PE=3 SV=1
Length = 296
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 3 FNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVR 46
F++G M ++A TG + + L LY++ + WT+ YDT YA R
Sbjct: 156 FSWGMPMAFTAETGDLPATAWL-LYIANLLWTVGYDTYYAMTDR 198
>sp|Q7VL38|UBIA_HAEDU 4-hydroxybenzoate octaprenyltransferase OS=Haemophilus ducreyi
(strain 35000HP / ATCC 700724) GN=ubiA PE=3 SV=1
Length = 277
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYA 42
M F + M Y AV + + C L+L+ I WT+ YDT YA
Sbjct: 135 MAFGWAIPMAYGAVIEDLPLT-CWLLFLANILWTVAYDTQYA 175
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.143 0.477
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,646,431
Number of Sequences: 539616
Number of extensions: 947551
Number of successful extensions: 3074
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 145
Number of HSP's that attempted gapping in prelim test: 3016
Number of HSP's gapped (non-prelim): 191
length of query: 77
length of database: 191,569,459
effective HSP length: 48
effective length of query: 29
effective length of database: 165,667,891
effective search space: 4804368839
effective search space used: 4804368839
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)