Query psy1912
Match_columns 77
No_of_seqs 113 out of 847
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 19:27:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1381|consensus 99.9 5.1E-24 1.1E-28 160.7 3.1 67 1-67 204-272 (353)
2 PRK12895 ubiA prenyltransferas 99.8 1.9E-21 4.2E-26 144.1 5.1 69 2-70 139-210 (286)
3 PRK12873 ubiA prenyltransferas 99.8 8.4E-19 1.8E-23 130.8 5.1 66 1-67 149-217 (294)
4 PLN02809 4-hydroxybenzoate non 99.7 2.1E-18 4.4E-23 127.7 5.3 69 1-69 146-216 (289)
5 PRK12876 ubiA prenyltransferas 99.7 5.3E-18 1.2E-22 127.1 5.1 70 1-70 148-223 (300)
6 PRK12888 ubiA prenyltransferas 99.7 1E-17 2.2E-22 123.5 5.4 68 2-70 141-210 (284)
7 PRK12870 ubiA 4-hydroxybenzoat 99.7 1.5E-17 3.2E-22 122.7 5.4 68 1-69 147-216 (290)
8 PRK13106 ubiA prenyltransferas 99.7 1.9E-17 4.2E-22 123.3 4.8 67 2-69 151-226 (300)
9 PRK12874 ubiA prenyltransferas 99.6 4.2E-16 9E-21 115.3 5.1 68 1-69 148-217 (291)
10 PRK12847 ubiA 4-hydroxybenzoat 99.6 4.8E-16 1E-20 113.5 5.0 68 2-70 147-216 (285)
11 PRK12878 ubiA 4-hydroxybenzoat 99.6 5.4E-16 1.2E-20 115.8 5.2 67 2-69 174-242 (314)
12 COG0382 UbiA 4-hydroxybenzoate 99.6 5.7E-16 1.2E-20 113.1 4.6 69 2-71 149-219 (289)
13 PRK12886 ubiA prenyltransferas 99.6 1.6E-15 3.5E-20 112.1 5.5 68 2-70 144-213 (291)
14 PRK12848 ubiA 4-hydroxybenzoat 99.6 1.5E-15 3.3E-20 111.0 5.3 66 2-68 144-211 (282)
15 TIGR01474 ubiA_proteo 4-hydrox 99.6 3.8E-15 8.3E-20 109.0 5.1 63 2-65 142-206 (281)
16 TIGR01475 ubiA_other putative 99.5 3E-14 6.4E-19 103.8 4.8 67 2-69 138-208 (282)
17 PRK04375 protoheme IX farnesyl 99.5 8.5E-14 1.8E-18 102.6 5.2 68 2-70 149-218 (296)
18 TIGR01473 cyoE_ctaB protoheme 99.4 8E-13 1.7E-17 96.2 5.2 67 2-69 140-208 (280)
19 PRK12392 bacteriochlorophyll c 99.3 3.4E-12 7.4E-17 96.4 6.0 68 2-70 162-231 (331)
20 PRK12871 ubiA prenyltransferas 99.3 5.3E-12 1.2E-16 93.9 5.6 64 2-67 158-223 (297)
21 PLN02776 prenyltransferase 99.2 1.9E-11 4.2E-16 93.3 6.0 64 5-69 136-203 (341)
22 PRK13595 ubiA prenyltransferas 99.2 2.9E-11 6.2E-16 90.8 5.9 59 9-70 160-220 (292)
23 PRK13362 protoheme IX farnesyl 99.1 5.8E-11 1.3E-15 88.7 5.4 65 2-67 152-218 (306)
24 PRK12875 ubiA prenyltransferas 99.1 1.5E-10 3.3E-15 85.8 5.9 63 5-70 152-216 (282)
25 PRK12884 ubiA prenyltransferas 99.0 2.9E-10 6.2E-15 82.3 4.8 64 4-69 140-205 (279)
26 PRK12869 ubiA protoheme IX far 99.0 5.2E-10 1.1E-14 81.9 5.7 67 2-69 141-209 (279)
27 PRK12882 ubiA prenyltransferas 99.0 9.2E-10 2E-14 79.9 5.0 62 8-70 145-208 (276)
28 PRK09573 (S)-2,3-di-O-geranylg 98.9 7.6E-10 1.6E-14 80.6 4.1 65 3-70 139-205 (279)
29 PRK13105 ubiA prenyltransferas 98.9 2.2E-09 4.7E-14 79.9 5.4 62 8-70 148-211 (282)
30 PRK12887 ubiA tocopherol phyty 98.9 2E-09 4.4E-14 80.4 4.7 66 4-70 163-233 (308)
31 PRK07566 bacteriochlorophyll/c 98.7 4.8E-08 1E-12 72.8 6.4 62 7-69 175-239 (314)
32 PRK06080 1,4-dihydroxy-2-napht 98.6 8.1E-08 1.8E-12 70.1 6.5 59 11-70 159-219 (293)
33 PLN00012 chlorophyll synthetas 98.5 2.5E-07 5.5E-12 71.3 6.5 55 13-68 245-301 (375)
34 TIGR02056 ChlG chlorophyll syn 98.5 5.1E-07 1.1E-11 67.1 6.4 57 13-70 176-234 (306)
35 PRK12883 ubiA prenyltransferas 98.3 1.2E-06 2.6E-11 63.7 4.6 60 7-69 143-204 (277)
36 TIGR01476 chlor_syn_BchG bacte 98.2 2.3E-06 5.1E-11 62.3 5.7 54 16-70 157-212 (283)
37 PRK05951 ubiA prenyltransferas 98.1 6.6E-06 1.4E-10 60.9 6.1 56 8-64 159-216 (296)
38 PRK12872 ubiA prenyltransferas 98.0 1.5E-05 3.2E-10 57.7 5.8 60 10-70 151-212 (285)
39 PF01040 UbiA: UbiA prenyltran 97.8 2.3E-05 5E-10 54.5 3.8 64 2-66 128-193 (257)
40 TIGR02235 menA_cyano-plnt 1,4- 96.4 0.0061 1.3E-07 45.3 4.4 60 11-71 152-213 (285)
41 TIGR00751 menA 1,4-dihydroxy-2 96.3 0.013 2.9E-07 43.5 6.0 59 10-69 154-214 (284)
42 PRK07419 1,4-dihydroxy-2-napht 95.8 0.017 3.8E-07 43.4 4.7 57 13-70 167-225 (304)
43 PLN02922 prenyltransferase 94.9 0.05 1.1E-06 41.1 4.6 48 23-70 190-239 (315)
44 PRK13591 ubiA prenyltransferas 94.9 0.094 2E-06 40.0 6.0 32 39-70 197-230 (307)
45 PRK13387 1,4-dihydroxy-2-napht 94.6 0.14 3E-06 38.6 6.2 45 26-70 194-240 (317)
46 COG1575 MenA 1,4-dihydroxy-2-n 93.8 0.22 4.8E-06 38.1 5.9 58 9-67 165-224 (303)
47 COG0109 CyoE Polyprenyltransfe 93.2 0.029 6.2E-07 43.0 0.4 52 4-56 159-210 (304)
48 PLN02878 homogentisate phytylt 93.0 0.3 6.4E-06 37.0 5.5 41 29-69 164-206 (280)
49 PRK13592 ubiA prenyltransferas 71.1 5.7 0.00012 30.4 3.4 45 24-70 178-224 (299)
50 KOG1380|consensus 55.6 14 0.00029 29.5 3.0 52 4-57 233-285 (409)
51 TIGR01475 ubiA_other putative 50.8 27 0.00059 25.4 3.8 40 13-52 28-67 (282)
52 PRK10299 PhoPQ regulatory prot 45.2 40 0.00087 19.4 3.1 30 27-59 14-44 (47)
53 PRK12884 ubiA prenyltransferas 40.8 90 0.002 22.4 5.2 44 9-52 25-68 (279)
54 PRK06758 hypothetical protein; 38.9 56 0.0012 21.8 3.6 32 25-56 92-126 (128)
55 TIGR02056 ChlG chlorophyll syn 35.9 1E+02 0.0022 22.9 5.0 49 6-55 34-88 (306)
56 PRK08238 hypothetical protein; 33.1 58 0.0013 26.1 3.4 48 2-54 329-377 (479)
57 PRK09573 (S)-2,3-di-O-geranylg 31.9 1E+02 0.0022 22.3 4.3 37 17-53 33-69 (279)
58 PRK13106 ubiA prenyltransferas 31.9 85 0.0018 23.6 4.0 38 15-52 43-80 (300)
59 PRK12888 ubiA prenyltransferas 30.2 79 0.0017 23.4 3.5 39 15-53 33-71 (284)
60 COG5304 Uncharacterized protei 30.1 18 0.00039 23.5 0.1 20 58-77 57-78 (92)
61 PRK12874 ubiA prenyltransferas 29.2 1E+02 0.0023 22.8 4.0 39 16-54 42-80 (291)
62 PF10968 DUF2770: Protein of u 27.8 1E+02 0.0022 16.8 2.8 21 22-42 14-34 (36)
63 PRK12870 ubiA 4-hydroxybenzoat 26.4 1.2E+02 0.0025 22.5 3.8 40 15-54 40-79 (290)
64 PLN02776 prenyltransferase 23.3 1.8E+02 0.0038 22.6 4.4 46 8-53 15-61 (341)
65 cd05526 Bromo_polybromo_VI Bro 22.9 40 0.00087 22.1 0.7 13 35-47 10-22 (110)
66 PRK04375 protoheme IX farnesyl 22.8 1.5E+02 0.0034 21.7 3.9 46 7-52 29-75 (296)
67 TIGR02789 nickel_nikB nickel A 22.3 1.6E+02 0.0034 21.7 3.9 22 35-56 293-314 (314)
68 PLN00012 chlorophyll synthetas 22.0 2.2E+02 0.0047 22.2 4.7 48 5-53 102-155 (375)
69 PF13074 DUF3938: Protein of u 22.0 91 0.002 20.0 2.2 28 25-52 68-98 (102)
70 PF03908 Sec20: Sec20; InterP 20.2 99 0.0021 18.9 2.1 14 22-35 75-88 (92)
No 1
>KOG1381|consensus
Probab=99.89 E-value=5.1e-24 Score=160.65 Aligned_cols=67 Identities=45% Similarity=0.838 Sum_probs=61.7
Q ss_pred CceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhh
Q psy1912 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNI 67 (77)
Q Consensus 1 l~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~ 67 (77)
+|||||+++||.|+.|+..++.+++||++.++||+.|||||||||++||+|+|+||- +||+++..-+
T Consensus 204 ltfnwGAllGw~A~~g~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl 272 (353)
T KOG1381|consen 204 LTFNWGALLGWCALKGSLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWL 272 (353)
T ss_pred hhcchhhhhcchhhcCccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHH
Confidence 589999999999999999887899999999999999999999999999999999994 9998765433
No 2
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.84 E-value=1.9e-21 Score=144.15 Aligned_cols=69 Identities=20% Similarity=0.242 Sum_probs=62.0
Q ss_pred ceehhhHHHHHHhhCCCChh-hHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912 2 TFNYGALMGYSAVTGCVDWS-LCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV 70 (77)
Q Consensus 2 ~f~~g~l~~~~av~g~~~~~-~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~ 70 (77)
++++++++||++++|++++. .+++|++++++|+++|||+|||||+|||+|+|+||+ +||.|.++.++..
T Consensus 139 ~~g~~~l~g~~Av~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~ 210 (286)
T PRK12895 139 IIGLGVLAGYLAVIPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDI 210 (286)
T ss_pred HHHhHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHH
Confidence 57899999999999998753 246899999999999999999999999999999998 9999999887743
No 3
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=99.75 E-value=8.4e-19 Score=130.83 Aligned_cols=66 Identities=21% Similarity=0.352 Sum_probs=57.2
Q ss_pred CceehhhHHHHHHhhCCCChh-hHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhh
Q psy1912 1 MTFNYGALMGYSAVTGCVDWS-LCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNI 67 (77)
Q Consensus 1 l~f~~g~l~~~~av~g~~~~~-~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~ 67 (77)
+++++++++||++++|++++. ..++||+++++|+++|||+||+||+|||+|+|+||+ +||++ .+++
T Consensus 149 ~~~a~~~l~gw~Av~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~-~~~~ 217 (294)
T PRK12873 149 LCWGFAVLIPWAAAEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSN-ALKT 217 (294)
T ss_pred HHHHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChh-hHHH
Confidence 367999999999999999863 245678999999999999999999999999999998 99964 4443
No 4
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.74 E-value=2.1e-18 Score=127.71 Aligned_cols=69 Identities=42% Similarity=0.813 Sum_probs=61.4
Q ss_pred CceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN 69 (77)
Q Consensus 1 l~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~ 69 (77)
+++++++++||++++|++++...+++++++++|+++|||+||+||+|||+|.|+||+ +||.+....++.
T Consensus 146 ~~~~~~~l~g~~av~g~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~ 216 (289)
T PLN02809 146 LTFNWGALLGWAAVKGSLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG 216 (289)
T ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH
Confidence 367899999999999998876444699999999999999999999999999999997 999997777653
No 5
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.72 E-value=5.3e-18 Score=127.06 Aligned_cols=70 Identities=19% Similarity=0.096 Sum_probs=56.8
Q ss_pred CceehhhHHHHHHhhCC-CChh---hHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912 1 MTFNYGALMGYSAVTGC-VDWS---LCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV 70 (77)
Q Consensus 1 l~f~~g~l~~~~av~g~-~~~~---~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~ 70 (77)
+++++|++++|.+++++ +++. .++++.++..+|+.+|||+||+||+|||+|.|+||+ +||.+.++.++..
T Consensus 148 l~~~~~~l~~~~Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~ 223 (300)
T PRK12876 148 LVYYLAILMNFFAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASA 223 (300)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHH
Confidence 36789999999999987 4431 134556667777779999999999999999999998 9999988777653
No 6
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.71 E-value=1e-17 Score=123.52 Aligned_cols=68 Identities=25% Similarity=0.234 Sum_probs=62.2
Q ss_pred ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912 2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV 70 (77)
Q Consensus 2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~ 70 (77)
++++++++||.+++|++++. ++++++.+.+|+.+||++|++||+|||+|.|+||+ +||.|.+..++..
T Consensus 141 ~~~~~~l~g~~a~~g~~~~~-~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~ 210 (284)
T PRK12888 141 AQAVGPVGAWIAVTGTWSWP-AVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRV 210 (284)
T ss_pred HHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHH
Confidence 57899999999999999886 78999999999999999999999999999999997 9999988865543
No 7
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.70 E-value=1.5e-17 Score=122.67 Aligned_cols=68 Identities=26% Similarity=0.430 Sum_probs=62.6
Q ss_pred CceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN 69 (77)
Q Consensus 1 l~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~ 69 (77)
+++++++++||.+++|++++. ++++++++++|+.++|++||+||+|||+|.|+||+ +||.|.+..++.
T Consensus 147 ~~~~~~~l~g~~a~~g~~~~~-~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~ 216 (290)
T PRK12870 147 IAWGFAVLISWSAVTGHLDLG-TWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGL 216 (290)
T ss_pred HHHHhHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHH
Confidence 357899999999999999886 78999999999999999999999999999999997 999998887764
No 8
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.69 E-value=1.9e-17 Score=123.30 Aligned_cols=67 Identities=12% Similarity=0.025 Sum_probs=57.6
Q ss_pred ceehhhHHHHHHhhCCCCh-------hhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912 2 TFNYGALMGYSAVTGCVDW-------SLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN 69 (77)
Q Consensus 2 ~f~~g~l~~~~av~g~~~~-------~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~ 69 (77)
++++++++||.+++|.... ..++++++++++|+++|||+|++||+|||+|.|+||+ +|| |.++.++.
T Consensus 151 ~~~~~~~~G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~ 226 (300)
T PRK13106 151 IQGLAVFSGAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAG 226 (300)
T ss_pred HHHHHHHHHHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHH
Confidence 5788999999999885421 1357789999999999999999999999999999998 999 77777765
No 9
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.62 E-value=4.2e-16 Score=115.29 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=61.8
Q ss_pred CceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912 1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN 69 (77)
Q Consensus 1 l~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~ 69 (77)
+++++++++||++++|++++. .+++++++.+|+.++|++|++||+|||+|.|+||+ ++|.|.+..++.
T Consensus 148 ~~~~~~~l~G~~av~g~~~~~-~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~ 217 (291)
T PRK12874 148 LSLGLAPIAGVVAVLGEIPLW-SVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISR 217 (291)
T ss_pred HHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHH
Confidence 367899999999999999886 68899999999999999999999999999999997 999998877654
No 10
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.62 E-value=4.8e-16 Score=113.52 Aligned_cols=68 Identities=37% Similarity=0.532 Sum_probs=62.7
Q ss_pred ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912 2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV 70 (77)
Q Consensus 2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~ 70 (77)
+++++++++|.+++|++++. ++++++.+++|+..+|++||+||+|||+|.|+||+ ++|.|.+..+...
T Consensus 147 ~~~~~~l~~~~a~~g~~~~~-~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~ 216 (285)
T PRK12847 147 TFNMGILMAFAAVQNQLDIE-AILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRL 216 (285)
T ss_pred HHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHH
Confidence 57899999999999999887 78999999999999999999999999999999997 9999988877654
No 11
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.61 E-value=5.4e-16 Score=115.80 Aligned_cols=67 Identities=36% Similarity=0.518 Sum_probs=61.8
Q ss_pred ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912 2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN 69 (77)
Q Consensus 2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~ 69 (77)
+++|++++||.+++|++++. +++++++.++|+.++|++|++||+|||+|.|++|+ +||.+.+..+..
T Consensus 174 ~~~~~~l~g~~a~~g~~~~~-~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~ 242 (314)
T PRK12878 174 AFSWGALMGWAAHFGSLSLA-AVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVL 242 (314)
T ss_pred HHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHH
Confidence 57899999999999999986 78999999999999999999999999999999997 999988877654
No 12
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.61 E-value=5.7e-16 Score=113.13 Aligned_cols=69 Identities=30% Similarity=0.317 Sum_probs=64.0
Q ss_pred ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhhc
Q psy1912 2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNVN 71 (77)
Q Consensus 2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~~ 71 (77)
++++++++|+++++++.+.. +++|+++.++|++++|++|++||+|+|+|.|+||+ .||.+.++.++...
T Consensus 149 ~~~~~~~~g~~a~~~~~~~~-~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~ 219 (289)
T COG0382 149 AFGLGALAGAAAVGGSLPLL-AWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLL 219 (289)
T ss_pred HHHHHHHHHHHHHhCccchH-HHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHH
Confidence 57899999999999987776 79999999999999999999999999999999997 99999999988654
No 13
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.59 E-value=1.6e-15 Score=112.05 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=61.8
Q ss_pred ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912 2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV 70 (77)
Q Consensus 2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~ 70 (77)
++++++++||.+++|++++. ++++++++.+|+.++|++||+||+|||+|.|+||+ ++|.+.+..++.+
T Consensus 144 ~~~~~~l~g~~a~~g~~~~~-~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~ 213 (291)
T PRK12886 144 CLALAPLGAWIAIRGTIELP-AILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARV 213 (291)
T ss_pred HHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHH
Confidence 56789999999999999886 78999999999999999999999999999999997 9999988776543
No 14
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.59 E-value=1.5e-15 Score=111.03 Aligned_cols=66 Identities=30% Similarity=0.445 Sum_probs=60.4
Q ss_pred ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhh
Q psy1912 2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNID 68 (77)
Q Consensus 2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~ 68 (77)
+++++++++|.++++++++. ++++++++.+|+..+|++||+||+|||+|.|+||+ ++|.|.+..++
T Consensus 144 ~~g~~~~~g~~a~~~~~~~~-~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~ 211 (282)
T PRK12848 144 AFGWGIPMAFAAVQGSVPLE-AWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIG 211 (282)
T ss_pred HHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHH
Confidence 46788999999999999886 78999999999999999999999999999999997 99998876654
No 15
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.56 E-value=3.8e-15 Score=109.04 Aligned_cols=63 Identities=40% Similarity=0.624 Sum_probs=57.5
Q ss_pred ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhh
Q psy1912 2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSIT 65 (77)
Q Consensus 2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~ 65 (77)
++++++++||.+++|++++. ++.+++++++|+.++|++|++||+|||+|.|+||+ ++|.+...
T Consensus 142 ~~~~~~~~g~~a~~g~~~~~-~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~ 206 (281)
T TIGR01474 142 AFGWGALMGWAAVTGDLSTA-AWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKP 206 (281)
T ss_pred HHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHH
Confidence 57899999999999998876 67799999999999999999999999999999997 99987643
No 16
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.49 E-value=3e-14 Score=103.82 Aligned_cols=67 Identities=24% Similarity=0.254 Sum_probs=60.0
Q ss_pred ceehhhHHHHHHhhCCCC--hhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912 2 TFNYGALMGYSAVTGCVD--WSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN 69 (77)
Q Consensus 2 ~f~~g~l~~~~av~g~~~--~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~ 69 (77)
++++++++||.+++|+++ +. ++++++..++|+..+|++|++||+|+|+|.|+||+ ++|.|.+..+..
T Consensus 138 ~~~~~~~~g~~a~~g~~~~~~~-~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~ 208 (282)
T TIGR01475 138 TYGLAPLAGWVAVIGTISFFLV-AWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIAS 208 (282)
T ss_pred HHHHHHHHHHHHHhCCccchHH-HHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHH
Confidence 467899999999999988 65 68899999999999999999999999999999997 999887766654
No 17
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.46 E-value=8.5e-14 Score=102.57 Aligned_cols=68 Identities=19% Similarity=0.102 Sum_probs=60.7
Q ss_pred ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912 2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV 70 (77)
Q Consensus 2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~ 70 (77)
+.++++++||.+++|++++. ++++++.+.+|++.+|++|++||+|||+|.|+||+ ++|.+.+..++..
T Consensus 149 ~g~~~~l~g~~a~~g~~~~~-~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~ 218 (296)
T PRK04375 149 AGAMPPLIGWAAVTGSLSWE-ALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILL 218 (296)
T ss_pred HHHhHHHHHHHHhCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHH
Confidence 45688999999999999886 78899999999999999999999999999999997 9999877765543
No 18
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.36 E-value=8e-13 Score=96.22 Aligned_cols=67 Identities=13% Similarity=0.002 Sum_probs=60.0
Q ss_pred ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912 2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN 69 (77)
Q Consensus 2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~ 69 (77)
+.++++++||.+++|++++. ++++++...+|+..+|+.|++||+|||+|.|+||+ ++|.|.+..+..
T Consensus 140 ~g~~~~l~g~~a~~g~~~~~-~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~ 208 (280)
T TIGR01473 140 AGAVPPLIGWAAVTGSISLG-AWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIA 208 (280)
T ss_pred HHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHH
Confidence 35678899999999999886 78899999999999999999999999999999997 999988766543
No 19
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.31 E-value=3.4e-12 Score=96.39 Aligned_cols=68 Identities=6% Similarity=-0.080 Sum_probs=60.2
Q ss_pred ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912 2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV 70 (77)
Q Consensus 2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~ 70 (77)
++++.+++++.++.+++++. .+.+++...+|++++|++|++||+|+|+|.|+||+ +||.|.+..++..
T Consensus 162 ~~~~~~~~~~~a~~g~~~~~-~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~ 231 (331)
T PRK12392 162 SYGFITFLSANALFSDIRPE-VVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFI 231 (331)
T ss_pred HHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHH
Confidence 46677788888888888876 67889999999999999999999999999999997 9999999887654
No 20
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.28 E-value=5.3e-12 Score=93.89 Aligned_cols=64 Identities=14% Similarity=0.013 Sum_probs=53.6
Q ss_pred ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhh
Q psy1912 2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNI 67 (77)
Q Consensus 2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~ 67 (77)
++++.++.+| +++|++++. .+.+++.+.+|+..+|++|++||+|||+|.|+||+ +||.+.+..+
T Consensus 158 ~~~~~~~~g~-~~~g~~~~~-~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~ 223 (297)
T PRK12871 158 DFTLFPAAGY-LCYGQPDMT-ALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYW 223 (297)
T ss_pred HHHHHHHHHH-HHhCCCcHH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHH
Confidence 3556556665 468888876 78889999999999999999999999999999997 9998876643
No 21
>PLN02776 prenyltransferase
Probab=99.22 E-value=1.9e-11 Score=93.26 Aligned_cols=64 Identities=16% Similarity=0.054 Sum_probs=58.1
Q ss_pred hhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee----eeccchhhhhhh
Q psy1912 5 YGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV----NFISKSITNIDN 69 (77)
Q Consensus 5 ~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si----~fG~~~~~~~~~ 69 (77)
+++++||+|++|++++. +++||+++++|+..+|+.||+||+|||+|.|++.+ .+|.+.++.+..
T Consensus 136 ~ppL~Gw~Avtg~~~~~-~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~ 203 (341)
T PLN02776 136 IPPLMGWAAASGQLDAG-AMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALR 203 (341)
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHH
Confidence 78999999999999997 79999999999999999999999999999999875 477787777664
No 22
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.20 E-value=2.9e-11 Score=90.77 Aligned_cols=59 Identities=12% Similarity=-0.049 Sum_probs=48.3
Q ss_pred HHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912 9 MGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV 70 (77)
Q Consensus 9 ~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~ 70 (77)
..+.++.|+.. .+..+++.++|++++|++|++||.|+|+|.|+||+ +||.|.+.+++..
T Consensus 160 ~~~~~~~g~~~---~~~~l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~ 220 (292)
T PRK13595 160 ALPALALGAPV---PWPPLLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALA 220 (292)
T ss_pred HHHHHHcCCcc---hHHHHHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHH
Confidence 34455666532 23445788999999999999999999999999998 9999999998764
No 23
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.15 E-value=5.8e-11 Score=88.65 Aligned_cols=65 Identities=18% Similarity=0.004 Sum_probs=58.9
Q ss_pred ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhh
Q psy1912 2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNI 67 (77)
Q Consensus 2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~ 67 (77)
+.++++++||.+++|++++. .+++++...+|+..+|+.+|++|+|||+|.|++++ ++|.+.+...
T Consensus 152 ~ga~p~l~G~~a~~g~~~~~-~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~ 218 (306)
T PRK13362 152 SGAMPPVVGYCAVTGQFDAG-ALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLH 218 (306)
T ss_pred HHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHH
Confidence 35788999999999999987 78999999999999999999999999999999997 9998766553
No 24
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.11 E-value=1.5e-10 Score=85.77 Aligned_cols=63 Identities=13% Similarity=0.008 Sum_probs=54.0
Q ss_pred hhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912 5 YGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV 70 (77)
Q Consensus 5 ~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~ 70 (77)
++++++|.+++|++++ ..++++..+|+.++|++|+.||+|+|+|.|+||+ +||.|.+..++..
T Consensus 152 ~~~~~~y~~~tg~~~~---~~l~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~ 216 (282)
T PRK12875 152 LPGVAAYALVSGSLPP---LLAVAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAA 216 (282)
T ss_pred HHHHHHHHHHcCCCcH---HHHHHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHH
Confidence 5667889999988754 4477788999999999999999999999999997 9999988876543
No 25
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.04 E-value=2.9e-10 Score=82.28 Aligned_cols=64 Identities=11% Similarity=-0.082 Sum_probs=53.5
Q ss_pred ehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912 4 NYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN 69 (77)
Q Consensus 4 ~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~ 69 (77)
+..++++|.++++..+ . .+.++...++|+.++|++|++||+|||+|.|++++ ++|.|.+..+..
T Consensus 140 ~~~~~~g~~~~~~~~~-~-~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~ 205 (279)
T PRK12884 140 GMTFIFGGIAVGELNE-A-VILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAA 205 (279)
T ss_pred HHHHHHHHHHhCCCch-H-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHH
Confidence 3456778887776533 3 68888999999999999999999999999999998 999998887654
No 26
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=99.02 E-value=5.2e-10 Score=81.93 Aligned_cols=67 Identities=21% Similarity=0.059 Sum_probs=57.6
Q ss_pred ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912 2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN 69 (77)
Q Consensus 2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~ 69 (77)
+.++++++||++++|++++. ++++++...+|+....-..+.+|+|||+|.|+||+ ++|.|.+..+..
T Consensus 141 ~g~~~~l~g~~a~~g~~~~~-~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~ 209 (279)
T PRK12869 141 AGNAAALAGYASGTGSLDLE-AVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAIS 209 (279)
T ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHH
Confidence 45788999999999999886 78889999999999865557799999999999996 999988776543
No 27
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=98.96 E-value=9.2e-10 Score=79.93 Aligned_cols=62 Identities=13% Similarity=-0.092 Sum_probs=49.6
Q ss_pred HHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912 8 LMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV 70 (77)
Q Consensus 8 l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~ 70 (77)
+.++.+.+...++ ..+++++..++|+..+|++|++||+|+|+|.|+|++ ++|.|.+..++..
T Consensus 145 ~~g~~~~~~~~~~-~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~ 208 (276)
T PRK12882 145 LFGGAAVGTEGLL-ALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAA 208 (276)
T ss_pred HHHHHHhcccchH-HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHH
Confidence 4455555433333 367889999999999999999999999999999997 9999988876543
No 28
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=98.95 E-value=7.6e-10 Score=80.60 Aligned_cols=65 Identities=12% Similarity=-0.005 Sum_probs=55.4
Q ss_pred eehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912 3 FNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV 70 (77)
Q Consensus 3 f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~ 70 (77)
++..+++||.++++. .. .+.+++..++|+..+|++|.+||+|+|++.|+|++ ++|.|.+..++..
T Consensus 139 ~G~~~~~g~~~~~~~--~~-~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~ 205 (279)
T PRK09573 139 TGLSFIFGGLAVFNV--LR-IIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKI 205 (279)
T ss_pred HHHHHHHHHHHHccc--hH-HHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHH
Confidence 456688899988873 33 56789999999999999999999999999999997 9999988877654
No 29
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=98.91 E-value=2.2e-09 Score=79.88 Aligned_cols=62 Identities=8% Similarity=-0.014 Sum_probs=52.8
Q ss_pred HHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912 8 LMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV 70 (77)
Q Consensus 8 l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~ 70 (77)
..|...+++.+++. .+.+..++.+|+.++|.+|++||.|.|++.|+||+ ++|.|.+..++..
T Consensus 148 v~G~~~~~~~~~~~-~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~ 211 (282)
T PRK13105 148 LYGLVLAGAPFTAA-LWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVG 211 (282)
T ss_pred HHHHHHhhccccHH-HHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHH
Confidence 34444456677765 67889999999999999999999999999999998 9999999988764
No 30
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=98.89 E-value=2e-09 Score=80.37 Aligned_cols=66 Identities=9% Similarity=0.007 Sum_probs=51.8
Q ss_pred ehhhHHHHHHhhC---CCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912 4 NYGALMGYSAVTG---CVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV 70 (77)
Q Consensus 4 ~~g~l~~~~av~g---~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~ 70 (77)
++|+.+.+.+..+ .++.. .+++++.+++|++++|++|+.||+|+|++.|+||+ ++|.|.+..+...
T Consensus 163 ~~g~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ 233 (308)
T PRK12887 163 NLGLFLHFQWLLGGSVLIPPT-VWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCW 233 (308)
T ss_pred HHHHHHHHHHHHhccccCcHH-HHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHH
Confidence 3455555544332 44454 57788899999999999999999999999999997 9999999876654
No 31
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=98.69 E-value=4.8e-08 Score=72.83 Aligned_cols=62 Identities=16% Similarity=-0.021 Sum_probs=51.7
Q ss_pred hHHHHHHhhC-CCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912 7 ALMGYSAVTG-CVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN 69 (77)
Q Consensus 7 ~l~~~~av~g-~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~ 69 (77)
+++++.++++ ..++. .+++++...+|+..+|++|.+||+|+|++.|+|++ ++|.|.+..+..
T Consensus 175 ~~~g~~~~~~~~~~~~-~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~ 239 (314)
T PRK07566 175 WWAGAAAFGAGLPSWP-IVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIAC 239 (314)
T ss_pred HHHHHHHhccCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHH
Confidence 3666777763 56665 67778888899999999999999999999999997 999998877653
No 32
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=98.65 E-value=8.1e-08 Score=70.05 Aligned_cols=59 Identities=12% Similarity=-0.084 Sum_probs=50.8
Q ss_pred HHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912 11 YSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV 70 (77)
Q Consensus 11 ~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~ 70 (77)
+...++++++. .+++.+...+|+..+++++..||+|+|++.|.+++ ++|.|.+..+...
T Consensus 159 ~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~ 219 (293)
T PRK06080 159 YYLQAGTVDSA-VFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAA 219 (293)
T ss_pred HHHhcCCCCHH-HHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHH
Confidence 44455677776 78889999999999999999999999999999997 9999998877654
No 33
>PLN00012 chlorophyll synthetase; Provisional
Probab=98.53 E-value=2.5e-07 Score=71.25 Aligned_cols=55 Identities=13% Similarity=-0.084 Sum_probs=49.0
Q ss_pred HhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhh
Q psy1912 13 AVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNID 68 (77)
Q Consensus 13 av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~ 68 (77)
+++|++++. .+.+++...+|++..++++.+||+|+|+|.|++|+ +||.+.+..+.
T Consensus 245 a~~g~~s~~-~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~ 301 (375)
T PLN00012 245 ALFGTLTPD-VVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWIC 301 (375)
T ss_pred HHcCCCCHH-HHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHH
Confidence 667888876 67888888999999999999999999999999997 99998887765
No 34
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=98.46 E-value=5.1e-07 Score=67.13 Aligned_cols=57 Identities=12% Similarity=-0.137 Sum_probs=50.1
Q ss_pred HhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912 13 AVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV 70 (77)
Q Consensus 13 av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~ 70 (77)
+++|++++. .+.+.+...+|+...++++..+|+|+|+|.|.|++ ++|.|.+..+...
T Consensus 176 a~~g~~~~~-~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~ 234 (306)
T TIGR02056 176 ALFGELNPD-IAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVG 234 (306)
T ss_pred HHhCCCcHH-HHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHH
Confidence 556888886 67888888999999999999999999999999997 9999988877653
No 35
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=98.27 E-value=1.2e-06 Score=63.66 Aligned_cols=60 Identities=10% Similarity=-0.012 Sum_probs=44.9
Q ss_pred hHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912 7 ALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN 69 (77)
Q Consensus 7 ~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~ 69 (77)
++.|+.++ +++++. .++. ...++|+...+.+|..||+|+|+|.|++++ .+|.|.+..+..
T Consensus 143 ~~~g~~a~-~~~~~~-~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~ 204 (277)
T PRK12883 143 PIYGAIAV-GRIGLA-GYLA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGA 204 (277)
T ss_pred HHHHHHHh-ccccHH-HHHH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHH
Confidence 34566665 666664 3332 336778888888888999999999999997 999988776654
No 36
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=98.25 E-value=2.3e-06 Score=62.33 Aligned_cols=54 Identities=9% Similarity=-0.106 Sum_probs=46.4
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912 16 GCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV 70 (77)
Q Consensus 16 g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~ 70 (77)
+++++. .+.+.+...+|+..+++++.++|.|+|++.|.|++ ++|.|.+..+...
T Consensus 157 ~~~~~~-~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~ 212 (283)
T TIGR01476 157 APLTWQ-SVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVT 212 (283)
T ss_pred CCCCHH-HHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHH
Confidence 456665 56677888899999999999999999999999997 9999988877544
No 37
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=98.14 E-value=6.6e-06 Score=60.89 Aligned_cols=56 Identities=5% Similarity=-0.295 Sum_probs=48.2
Q ss_pred HHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchh
Q psy1912 8 LMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSI 64 (77)
Q Consensus 8 l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~ 64 (77)
+.++...++++++. .+...+...+|+.....++..||+|+|+|.|.||+ +||.|.+
T Consensus 159 lg~~~~~~~~~~~~-~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a 216 (296)
T PRK05951 159 MGLIYVWLGNLSSP-NLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA 216 (296)
T ss_pred HHHHHHHhCcccHH-HHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH
Confidence 34455667778776 67778888999999999999999999999999997 9999988
No 38
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=98.01 E-value=1.5e-05 Score=57.70 Aligned_cols=60 Identities=5% Similarity=-0.204 Sum_probs=45.4
Q ss_pred HHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912 10 GYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV 70 (77)
Q Consensus 10 ~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~ 70 (77)
++...++.+++. .+...+..++|+...+.++..+|+|.|+|.|++++ ++|.|.+..+...
T Consensus 151 ~~~~~~~~~~~~-~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~ 212 (285)
T PRK12872 151 GVYYYQLTIFSL-LLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLI 212 (285)
T ss_pred HHHhcccccchH-HHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHH
Confidence 444445444554 45556666777788888888999999999999998 9999988877653
No 39
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=97.82 E-value=2.3e-05 Score=54.53 Aligned_cols=64 Identities=11% Similarity=-0.143 Sum_probs=49.2
Q ss_pred ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhh
Q psy1912 2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITN 66 (77)
Q Consensus 2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~ 66 (77)
+++..+++++.+.+++.+.+ .+.+.....+|....-...-++|.|+|+|.|.+++ ++|.+.+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 128 VFGLLILLGAYAAGGDPPPP-PFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred hhhHhhhhhhhhcCCcccHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 34566778888887776554 45566666777777777778999999999999997 899887764
No 40
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=96.37 E-value=0.0061 Score=45.31 Aligned_cols=60 Identities=7% Similarity=-0.228 Sum_probs=42.6
Q ss_pred HHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhhc
Q psy1912 11 YSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNVN 71 (77)
Q Consensus 11 ~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~~ 71 (77)
+-..++++++. .+..-+...+.+...=.+--.-|.|.|+|.|-|.+ ++|.|.+..+-...
T Consensus 152 ~yvqt~~~~~~-~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l 213 (285)
T TIGR02235 152 LYAQSQSFSLI-PWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWV 213 (285)
T ss_pred HHHhCCcCcHH-HHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHH
Confidence 44446677775 45555555555555555555679999999999997 99999998876543
No 41
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=96.31 E-value=0.013 Score=43.48 Aligned_cols=59 Identities=8% Similarity=-0.108 Sum_probs=45.0
Q ss_pred HHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912 10 GYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN 69 (77)
Q Consensus 10 ~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~ 69 (77)
++...++++++. .+...+.+.+.+..-=.+--..|.|.|+|.|-+++ ++|.|.+..+-.
T Consensus 154 ~~yvq~~~~~~~-~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~ 214 (284)
T TIGR00751 154 TQYLQAHRVDWV-GILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQ 214 (284)
T ss_pred HHHHhcCCCCHH-HHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHH
Confidence 344557778876 45555666677766666788899999999999997 999999887644
No 42
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=95.84 E-value=0.017 Score=43.42 Aligned_cols=57 Identities=7% Similarity=-0.236 Sum_probs=38.2
Q ss_pred HhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912 13 AVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV 70 (77)
Q Consensus 13 av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~ 70 (77)
..++++++. .+..-+...+.+...=.+-=..|+|.|+|.|-+.+ ++|.|.+..+-..
T Consensus 167 v~t~~~~~~-~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~ 225 (304)
T PRK07419 167 SQTPSWSLI-PLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPW 225 (304)
T ss_pred HhcCCCCHH-HHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHH
Confidence 345666664 44444444444444434445569999999999996 9999998876544
No 43
>PLN02922 prenyltransferase
Probab=94.92 E-value=0.05 Score=41.07 Aligned_cols=48 Identities=4% Similarity=-0.269 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912 23 CLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV 70 (77)
Q Consensus 23 ~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~ 70 (77)
.+...+...+++...=.+-=.-|.|.|+|.|-+++ ++|.|.+..+-.+
T Consensus 190 ~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~ 239 (315)
T PLN02922 190 VLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRW 239 (315)
T ss_pred HHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHH
Confidence 45667777777777777777889999999999996 9999999877554
No 44
>PRK13591 ubiA prenyltransferase; Provisional
Probab=94.89 E-value=0.094 Score=40.03 Aligned_cols=32 Identities=6% Similarity=-0.145 Sum_probs=28.4
Q ss_pred HHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912 39 TIYAHQVRIHLIDLCENGV--NFISKSITNIDNV 70 (77)
Q Consensus 39 TIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~ 70 (77)
++.-..|.|-|++.|.+++ .+|.+.+..+...
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~ 230 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLG 230 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHH
Confidence 6888999999999999997 9999998877653
No 45
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=94.61 E-value=0.14 Score=38.61 Aligned_cols=45 Identities=7% Similarity=-0.246 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912 26 LYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV 70 (77)
Q Consensus 26 L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~ 70 (77)
..+...+.+..-=.+--.-|.|.|+|.|-+.+ ++|.|.+..+-.+
T Consensus 194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~ 240 (317)
T PRK13387 194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAI 240 (317)
T ss_pred HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHH
Confidence 34444444444445555679999999999997 9999998876543
No 46
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=93.77 E-value=0.22 Score=38.11 Aligned_cols=58 Identities=14% Similarity=-0.026 Sum_probs=40.9
Q ss_pred HHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhh
Q psy1912 9 MGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNI 67 (77)
Q Consensus 9 ~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~ 67 (77)
+++-.-+++++|. .+..-+.+.+=+...--.--.-|.|+|+|.|=+++ ++|.|.+..+
T Consensus 165 g~~yiqt~~~~~~-~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l 224 (303)
T COG1575 165 GAYYIQTGRLSWA-ILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKL 224 (303)
T ss_pred HHHHHhcccchHH-HHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHH
Confidence 3333345566775 45555555555555566667899999999999997 9999887654
No 47
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.029 Score=42.97 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=39.8
Q ss_pred ehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCcce
Q psy1912 4 NYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENG 56 (77)
Q Consensus 4 ~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~S 56 (77)
+.++++||+|++|++++. .++||+-.++||--===-=|+-=+||=++.|+-=
T Consensus 159 a~PpliGwaAvtg~~~~~-a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPM 210 (304)
T COG0109 159 AMPPLIGWAAVTGSISLG-AILLFAIIFLWTPPHFWALALKYKDDYKAAGIPM 210 (304)
T ss_pred cccccceeeeeeCCCCch-HHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCc
Confidence 567899999999999997 7889999999985422223555577778888743
No 48
>PLN02878 homogentisate phytyltransferase
Probab=93.05 E-value=0.3 Score=37.00 Aligned_cols=41 Identities=2% Similarity=-0.228 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912 29 SGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN 69 (77)
Q Consensus 29 a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~ 69 (77)
...+-..+.+++=-.+|.|-|++.|++++ ++|.+.+..++.
T Consensus 164 f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~ 206 (280)
T PLN02878 164 FMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCV 206 (280)
T ss_pred HHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHH
Confidence 44566667789999999999999999997 999999888764
No 49
>PRK13592 ubiA prenyltransferase; Provisional
Probab=71.11 E-value=5.7 Score=30.41 Aligned_cols=45 Identities=13% Similarity=-0.060 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912 24 LPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV 70 (77)
Q Consensus 24 ~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~ 70 (77)
+++++-.++=+.+.+.+=..+| |||++ |++++ .||.|.+..++..
T Consensus 178 ~~l~l~afl~~l~rEI~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~ 224 (299)
T PRK13592 178 VLLAFTMYFPSLIWEVCRKIRA-PKDET-EYVTYSKLFGYKKATRFIEV 224 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-Ccccc-CCeeechhccchhHHHHHHH
Confidence 4566677777888888888999 88885 58886 9999999888753
No 50
>KOG1380|consensus
Probab=55.61 E-value=14 Score=29.53 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=40.4
Q ss_pred ehhhHHHHHHhhCCCChhhHHHHHHHHHHHHH-HHHHHhhccChHHHHHcCccee
Q psy1912 4 NYGALMGYSAVTGCVDWSLCLPLYLSGICWTI-IYDTIYAHQVRIHLIDLCENGV 57 (77)
Q Consensus 4 ~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti-~yDTIYA~QD~edD~k~Gv~Si 57 (77)
+..++|||++.+|.++.. .++|......|.+ +|.+ -++-=++|=.|.|-+=+
T Consensus 233 AIPPLMGwAAasg~l~~g-a~iLa~~LyaWQfPHFna-LS~~lR~DYs~~GY~Mm 285 (409)
T KOG1380|consen 233 AIPPLMGWAAASGLLDPG-AMILAGILYAWQFPHFNA-LSWNLRNDYSKAGYRMM 285 (409)
T ss_pred cCCccchhhhhccCCCcc-HHHHHHHHHHhcccchhh-hhhhhchhhhhccEEEE
Confidence 456899999999999987 6888888888976 4554 36667777788887644
No 51
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=50.80 E-value=27 Score=25.37 Aligned_cols=40 Identities=8% Similarity=-0.086 Sum_probs=31.2
Q ss_pred HhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHc
Q psy1912 13 AVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDL 52 (77)
Q Consensus 13 av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~ 52 (77)
+..+..++...+.+.++..+-..+-.++--.+|+|.|++.
T Consensus 28 a~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~ 67 (282)
T TIGR01475 28 AAKGLPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARN 67 (282)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 3345556644566778888888999999999999999987
No 52
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=45.17 E-value=40 Score=19.37 Aligned_cols=30 Identities=10% Similarity=0.165 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhhccChHHHHHcCccee-ee
Q psy1912 27 YLSGICWTIIYDTIYAHQVRIHLIDLCENGV-NF 59 (77)
Q Consensus 27 ~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si-~f 59 (77)
-.-.++|...+|. |.-|| .|-..|+.|+ +|
T Consensus 14 ~~Cl~lyl~ald~-~CDQg--~~F~~GIC~it~~ 44 (47)
T PRK10299 14 LACLLLWAQVFNM-MCDQD--VQFFSGICAINKF 44 (47)
T ss_pred HHHHHHHHHHHHH-HhcCC--ccceeeeeeeeee
Confidence 3455689999984 66677 6777888887 44
No 53
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=40.83 E-value=90 Score=22.39 Aligned_cols=44 Identities=9% Similarity=-0.140 Sum_probs=30.7
Q ss_pred HHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHc
Q psy1912 9 MGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDL 52 (77)
Q Consensus 9 ~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~ 52 (77)
.|.....+..++...+..++++.+-..+-.++--..|+|.|++.
T Consensus 25 ~g~~la~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~ 68 (279)
T PRK12884 25 LGAIIALGGLPLDEALLGFLTAFFASGSANALNDYFDYEVDRIN 68 (279)
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhcc
Confidence 33333333343333456678888888888999999999999987
No 54
>PRK06758 hypothetical protein; Provisional
Probab=38.92 E-value=56 Score=21.82 Aligned_cols=32 Identities=13% Similarity=0.075 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHH---HHHhhccChHHHHHcCcce
Q psy1912 25 PLYLSGICWTIIY---DTIYAHQVRIHLIDLCENG 56 (77)
Q Consensus 25 ~L~~a~~~Wti~y---DTIYA~QD~edD~k~Gv~S 56 (77)
.+|-+..-|-+.| |..--.||-|+|---|+.|
T Consensus 92 affhglwtwfiafcladvfnllqd~ee~~gr~ies 126 (128)
T PRK06758 92 AFFHGLWTWFIAFCLADVFNLLQDNEEENGRQIES 126 (128)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcCchhhcCCCccC
Confidence 4566777777776 8888899999998877765
No 55
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=35.86 E-value=1e+02 Score=22.88 Aligned_cols=49 Identities=33% Similarity=0.318 Sum_probs=30.7
Q ss_pred hhHHHHHHhhCCCChhh------HHHHHHHHHHHHHHHHHHhhccChHHHHHcCcc
Q psy1912 6 GALMGYSAVTGCVDWSL------CLPLYLSGICWTIIYDTIYAHQVRIHLIDLCEN 55 (77)
Q Consensus 6 g~l~~~~av~g~~~~~~------~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~ 55 (77)
+++.|... .+++++.. .+.+.+++.+=..+-+.+-=..|+|.|++.+-+
T Consensus 34 ~~~~G~~~-~~~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~ 88 (306)
T TIGR02056 34 GVVCGAAA-SGNFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEPY 88 (306)
T ss_pred HHHHHHHH-cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCC
Confidence 45555553 45566542 133345656666777888888888889887743
No 56
>PRK08238 hypothetical protein; Validated
Probab=33.09 E-value=58 Score=26.08 Aligned_cols=48 Identities=10% Similarity=0.066 Sum_probs=29.2
Q ss_pred ceehhhHHHHHHhhCCCChhhHHHH-HHHHHHHHHHHHHHhhccChHHHHHcCc
Q psy1912 2 TFNYGALMGYSAVTGCVDWSLCLPL-YLSGICWTIIYDTIYAHQVRIHLIDLCE 54 (77)
Q Consensus 2 ~f~~g~l~~~~av~g~~~~~~~~~L-~~a~~~Wti~yDTIYA~QD~edD~k~Gv 54 (77)
+|++++++|+++++ ++++ .+++ +...++|... ..-=+.|.+.+..-|-
T Consensus 329 ~~~lr~~~G~~a~~--~~~s-~wll~~~~~~~l~la--~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 329 LYTLRIIAGAAAIG--VALS-FWLLAFSMFFFLSLA--LVKRYTELRRALQRGK 377 (479)
T ss_pred HHHHHHHHHHHHhc--cCHH-HHHHHHHHHHHHHHH--HHHhHHHHHHHHhcCC
Confidence 57899999999876 5665 4544 4444444444 4444555665555554
No 57
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=31.91 E-value=1e+02 Score=22.32 Aligned_cols=37 Identities=8% Similarity=-0.379 Sum_probs=28.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcC
Q psy1912 17 CVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLC 53 (77)
Q Consensus 17 ~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~G 53 (77)
+.++...+...+++.+-..+=.++--..|+|.|++..
T Consensus 33 ~~~~~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~ 69 (279)
T PRK09573 33 KIDLKGIILAALVVFLVCAGGNVINDIYDIEIDKINK 69 (279)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhhcccccccccC
Confidence 4454434566778888888889999999999999764
No 58
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=31.89 E-value=85 Score=23.55 Aligned_cols=38 Identities=11% Similarity=-0.191 Sum_probs=27.7
Q ss_pred hCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHc
Q psy1912 15 TGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDL 52 (77)
Q Consensus 15 ~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~ 52 (77)
.+..++...+...+++.+-..+=-++-=..|+|-|++.
T Consensus 43 ~~~~~~~~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~ 80 (300)
T PRK13106 43 KGIPPISTLILIFLALFFLRTAGMTNDNLADLEIDAKN 80 (300)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCC
Confidence 45555543445667777777777888889999999987
No 59
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=30.18 E-value=79 Score=23.37 Aligned_cols=39 Identities=13% Similarity=-0.055 Sum_probs=27.8
Q ss_pred hCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcC
Q psy1912 15 TGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLC 53 (77)
Q Consensus 15 ~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~G 53 (77)
.+.+++...++..++.++=..+=.++-=..|+|-|++.-
T Consensus 33 ~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~ 71 (284)
T PRK12888 33 DGSVHWADLLLVTVAMVGARTFAMAANRIIDREIDARNP 71 (284)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCC
Confidence 566666434455667777777777888888999998874
No 60
>COG5304 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.09 E-value=18 Score=23.49 Aligned_cols=20 Identities=35% Similarity=0.629 Sum_probs=11.9
Q ss_pred eeccchhhhh--hhhccCCCCC
Q psy1912 58 NFISKSITNI--DNVNRGLPYQ 77 (77)
Q Consensus 58 ~fG~~~~~~~--~~~~~~~~~~ 77 (77)
+..+....+| -.--+|+|||
T Consensus 57 Rlss~dLeaIK~kaSa~GlpYQ 78 (92)
T COG5304 57 RLSSSDLEAIKQKASAEGLPYQ 78 (92)
T ss_pred ecCHHHHHHHHHHHhhcCCcHH
Confidence 4444444333 3456899998
No 61
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=29.25 E-value=1e+02 Score=22.80 Aligned_cols=39 Identities=13% Similarity=-0.080 Sum_probs=23.0
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCc
Q psy1912 16 GCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCE 54 (77)
Q Consensus 16 g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv 54 (77)
+.+++...+...++..+=...--++-=..|+|-|++.--
T Consensus 42 ~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~R 80 (291)
T PRK12874 42 GWFGFKLLILGILAAVSARNFAMAFNRLVDRDIDKDNPR 80 (291)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCC
Confidence 344554233344444444444467777889999988853
No 62
>PF10968 DUF2770: Protein of unknown function (DUF2770); InterPro: IPR024494 Members in this family of proteins from Enterobacteria are annotated as YceO; however, currently no function is known.
Probab=27.81 E-value=1e+02 Score=16.79 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q psy1912 22 LCLPLYLSGICWTIIYDTIYA 42 (77)
Q Consensus 22 ~~~~L~~a~~~Wti~yDTIYA 42 (77)
.-+.||++...--.+.|.+|=
T Consensus 14 eHlmlYi~Lw~lL~~~D~~y~ 34 (36)
T PF10968_consen 14 EHLMLYICLWLLLAALDLYYL 34 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 357788888888899999983
No 63
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=26.43 E-value=1.2e+02 Score=22.48 Aligned_cols=40 Identities=10% Similarity=-0.125 Sum_probs=24.3
Q ss_pred hCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCc
Q psy1912 15 TGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCE 54 (77)
Q Consensus 15 ~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv 54 (77)
.+..++...+...++.++=..+=.++-=..|+|-|+|+--
T Consensus 40 ~~~~~~~~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R 79 (290)
T PRK12870 40 HGLPPLPLVGIIILGALATSAAGCVVNDLWDRDIDPQVER 79 (290)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence 4444543233344555555556667788889999976543
No 64
>PLN02776 prenyltransferase
Probab=23.35 E-value=1.8e+02 Score=22.60 Aligned_cols=46 Identities=7% Similarity=-0.177 Sum_probs=31.7
Q ss_pred HHHHHHh-hCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcC
Q psy1912 8 LMGYSAV-TGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLC 53 (77)
Q Consensus 8 l~~~~av-~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~G 53 (77)
++|+... ++..++...+...+++.+=..+=-++--..|+|-|+++-
T Consensus 15 ~~G~~lA~~~~~~~~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~ 61 (341)
T PLN02776 15 GAGFVLGSGEAIDLPGLGWTCAGTMLCAASANTLNQVFEVKNDSKMK 61 (341)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCC
Confidence 3444433 334555434556678888888888999999999999865
No 65
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=22.92 E-value=40 Score=22.13 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=10.7
Q ss_pred HHHHHHhhccChH
Q psy1912 35 IIYDTIYAHQVRI 47 (77)
Q Consensus 35 i~yDTIYA~QD~e 47 (77)
-.||+||-|||.+
T Consensus 10 ~l~~~V~~~~D~~ 22 (110)
T cd05526 10 TLFVSVMNHQDEE 22 (110)
T ss_pred HHHHHHHhccCCC
Confidence 3689999999954
No 66
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=22.81 E-value=1.5e+02 Score=21.74 Aligned_cols=46 Identities=17% Similarity=-0.066 Sum_probs=28.8
Q ss_pred hHHHHHHhh-CCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHc
Q psy1912 7 ALMGYSAVT-GCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDL 52 (77)
Q Consensus 7 ~l~~~~av~-g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~ 52 (77)
+++|..... +..++...+...++..+-..+=.++--..|+|-|++.
T Consensus 29 ~~~G~~la~~~~~~~~~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~ 75 (296)
T PRK04375 29 ALGGMLLAPPGVPPLLLLLLTLLGIALVAGAAGALNNYIDRDIDAKM 75 (296)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCC
Confidence 344444332 3445533445566666666677788888899999875
No 67
>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB. This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases.
Probab=22.26 E-value=1.6e+02 Score=21.72 Aligned_cols=22 Identities=14% Similarity=-0.151 Sum_probs=18.8
Q ss_pred HHHHHHhhccChHHHHHcCcce
Q psy1912 35 IIYDTIYAHQVRIHLIDLCENG 56 (77)
Q Consensus 35 i~yDTIYA~QD~edD~k~Gv~S 56 (77)
...|.+|..-|..--++.|+|.
T Consensus 293 ~l~d~l~~~ldpr~r~~~~~~~ 314 (314)
T TIGR02789 293 LIVDLFQALLDPRIRRKEGVHA 314 (314)
T ss_pred HHHHHHHHHhCcccccccccCC
Confidence 4789999999999888888873
No 68
>PLN00012 chlorophyll synthetase; Provisional
Probab=22.04 E-value=2.2e+02 Score=22.21 Aligned_cols=48 Identities=27% Similarity=0.259 Sum_probs=33.3
Q ss_pred hhhHHHHHHhhCCCChhh------HHHHHHHHHHHHHHHHHHhhccChHHHHHcC
Q psy1912 5 YGALMGYSAVTGCVDWSL------CLPLYLSGICWTIIYDTIYAHQVRIHLIDLC 53 (77)
Q Consensus 5 ~g~l~~~~av~g~~~~~~------~~~L~~a~~~Wti~yDTIYA~QD~edD~k~G 53 (77)
+++++|..+ .|.++|.. .+++.++..+=+.+-.++--.-|+|-|++.+
T Consensus 102 ~~v~~G~~~-~g~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~ 155 (375)
T PLN00012 102 WGVLCGAAA-SGNFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINE 155 (375)
T ss_pred HHHHHHHHH-cCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCC
Confidence 566777775 55566541 2445566666677778888899999998876
No 69
>PF13074 DUF3938: Protein of unknown function (DUF3938)
Probab=21.95 E-value=91 Score=20.05 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHH---HHHhhccChHHHHHc
Q psy1912 25 PLYLSGICWTIIY---DTIYAHQVRIHLIDL 52 (77)
Q Consensus 25 ~L~~a~~~Wti~y---DTIYA~QD~edD~k~ 52 (77)
.+|-+..-|-+.| |..--.||-|+|---
T Consensus 68 affhglwtwfiafcladvfnllqdneedsgr 98 (102)
T PF13074_consen 68 AFFHGLWTWFIAFCLADVFNLLQDNEEDSGR 98 (102)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcCchhhccC
Confidence 4566777777776 788889999999543
No 70
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=20.15 E-value=99 Score=18.93 Aligned_cols=14 Identities=7% Similarity=0.377 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHH
Q psy1912 22 LCLPLYLSGICWTI 35 (77)
Q Consensus 22 ~~~~L~~a~~~Wti 35 (77)
..+.+|+++++|++
T Consensus 75 ~~~~~f~~~v~yI~ 88 (92)
T PF03908_consen 75 FAFLFFLLVVLYIL 88 (92)
T ss_pred HHHHHHHHHHHHHh
Confidence 35778899999986
Done!