Query psy1912
Match_columns 77
No_of_seqs 113 out of 847
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 19:28:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l4f_A RHO guanine nucleotide 32.9 5.3 0.00018 23.3 -1.0 22 36-57 5-26 (61)
2 2w6b_A RHO guanine nucleotide 31.8 9.8 0.00034 21.8 0.0 16 36-51 8-23 (56)
3 1pi7_A VPU protein, U ORF prot 22.9 73 0.0025 16.4 2.5 14 24-37 13-26 (36)
4 3p87_G Ribonuclease H2 subunit 17.6 21 0.00071 17.0 -0.4 14 51-64 2-17 (23)
5 3pih_A Uvrabc system protein A 13.5 47 0.0016 27.6 0.4 7 36-42 41-47 (916)
6 2r6f_A Excinuclease ABC subuni 12.1 55 0.0019 27.6 0.4 8 35-42 60-67 (972)
7 3lrt_A Ribose-phosphate pyroph 12.0 37 0.0013 24.3 -0.6 8 41-48 89-96 (286)
8 2ygr_A Uvrabc system protein A 11.9 56 0.0019 27.6 0.4 8 35-42 62-69 (993)
9 3s5j_B Ribose-phosphate pyroph 11.7 41 0.0014 24.6 -0.4 9 41-49 94-102 (326)
10 2nr1_A NR1 M2, M2; receptor, s 10.4 39 0.0013 16.6 -0.6 7 3-9 15-21 (27)
No 1
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=32.89 E-value=5.3 Score=23.30 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=18.0
Q ss_pred HHHHHhhccChHHHHHcCccee
Q psy1912 36 IYDTIYAHQVRIHLIDLCENGV 57 (77)
Q Consensus 36 ~yDTIYA~QD~edD~k~Gv~Si 57 (77)
.-||+||.-|-..+.+.+.+++
T Consensus 5 LVDtVYalkDev~eLk~e~k~~ 26 (61)
T 3l4f_A 5 LVDTVYALKDEVQELRQDNKKM 26 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999998888877654
No 2
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=31.80 E-value=9.8 Score=21.79 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=11.5
Q ss_pred HHHHHhhccChHHHHH
Q psy1912 36 IYDTIYAHQVRIHLID 51 (77)
Q Consensus 36 ~yDTIYA~QD~edD~k 51 (77)
..||+||.-|----.+
T Consensus 8 lVDtVYaLkDqV~eL~ 23 (56)
T 2w6b_A 8 LVDTVYALKDEVQELR 23 (56)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4699999988654444
No 3
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=22.92 E-value=73 Score=16.37 Aligned_cols=14 Identities=14% Similarity=0.686 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHH
Q psy1912 24 LPLYLSGICWTIIY 37 (77)
Q Consensus 24 ~~L~~a~~~Wti~y 37 (77)
..+-++.+.||+.|
T Consensus 13 valIiaIVVWtiv~ 26 (36)
T 1pi7_A 13 VAIIIAIVVWSIVI 26 (36)
T ss_pred HHHHHHHHHHHHHH
Confidence 45778999999876
No 4
>3p87_G Ribonuclease H2 subunit B; DNA binding, DNA replication, DNA repair, sliding clamp, PCN interacting peptide (PIP) motif, PIP-box motif, DNA clamp; 2.99A {Homo sapiens}
Probab=17.57 E-value=21 Score=17.00 Aligned_cols=14 Identities=14% Similarity=-0.019 Sum_probs=10.2
Q ss_pred HcCccee--eeccchh
Q psy1912 51 DLCENGV--NFISKSI 64 (77)
Q Consensus 51 k~Gv~Si--~fG~~~~ 64 (77)
|-|++|| .||.+..
T Consensus 2 KsgMKSI~sFF~~k~k 17 (23)
T 3p87_G 2 KSGMKSIDTFFGVKNK 17 (26)
T ss_pred CccchhHHHHhccccc
Confidence 5688998 7886643
No 5
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=13.48 E-value=47 Score=27.57 Aligned_cols=7 Identities=71% Similarity=0.971 Sum_probs=3.8
Q ss_pred HHHHHhh
Q psy1912 36 IYDTIYA 42 (77)
Q Consensus 36 ~yDTIYA 42 (77)
.||||||
T Consensus 41 afdtl~a 47 (916)
T 3pih_A 41 AMDTIYA 47 (916)
T ss_dssp HTTTHHH
T ss_pred HHHHHHH
Confidence 4555554
No 6
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=12.09 E-value=55 Score=27.60 Aligned_cols=8 Identities=63% Similarity=1.186 Sum_probs=4.1
Q ss_pred HHHHHHhh
Q psy1912 35 IIYDTIYA 42 (77)
Q Consensus 35 i~yDTIYA 42 (77)
+.||||||
T Consensus 60 Lafdtlya 67 (972)
T 2r6f_A 60 LAFDTIYA 67 (972)
T ss_dssp HHTTTHHH
T ss_pred HHHHHHHH
Confidence 34555554
No 7
>3lrt_A Ribose-phosphate pyrophosphokinase; phosphoribosyl transferase, ATP analog binding, ATP-binding, metal-binding, nucleotide biosynthesis; HET: ADP; 1.53A {Thermoplasma volcanium} PDB: 3lpn_A* 3nag_A* 3mbi_A*
Probab=12.04 E-value=37 Score=24.26 Aligned_cols=8 Identities=38% Similarity=0.351 Sum_probs=6.9
Q ss_pred hhccChHH
Q psy1912 41 YAHQVRIH 48 (77)
Q Consensus 41 YA~QD~ed 48 (77)
||.||+++
T Consensus 89 YaRQDr~~ 96 (286)
T 3lrt_A 89 YARQHQRY 96 (286)
T ss_dssp TTTCCSCS
T ss_pred cccCcccC
Confidence 89999876
No 8
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=11.94 E-value=56 Score=27.60 Aligned_cols=8 Identities=50% Similarity=1.074 Sum_probs=4.2
Q ss_pred HHHHHHhh
Q psy1912 35 IIYDTIYA 42 (77)
Q Consensus 35 i~yDTIYA 42 (77)
+.||||||
T Consensus 62 Lafdtlya 69 (993)
T 2ygr_A 62 LAFDTIFA 69 (993)
T ss_dssp HHTTTHHH
T ss_pred HHHHHHHH
Confidence 34555554
No 9
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=11.75 E-value=41 Score=24.64 Aligned_cols=9 Identities=33% Similarity=0.353 Sum_probs=7.8
Q ss_pred hhccChHHH
Q psy1912 41 YAHQVRIHL 49 (77)
Q Consensus 41 YA~QD~edD 49 (77)
||.||+++-
T Consensus 94 YaRQDr~~~ 102 (326)
T 3s5j_B 94 YARQDKKDK 102 (326)
T ss_dssp TTTCCSCTT
T ss_pred ccccCCcCC
Confidence 999999884
No 10
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=10.41 E-value=39 Score=16.59 Aligned_cols=7 Identities=43% Similarity=1.213 Sum_probs=3.7
Q ss_pred eehhhHH
Q psy1912 3 FNYGALM 9 (77)
Q Consensus 3 f~~g~l~ 9 (77)
|+||++.
T Consensus 15 F~WGvll 21 (27)
T 2nr1_A 15 FSWGVLL 21 (27)
T ss_dssp HHHHHHH
T ss_pred HhhHhhe
Confidence 5555543
Done!