RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1912
         (77 letters)



>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation
           factor DnaA {Aquifex aeolicus [TaxId: 63363]}
          Length = 213

 Score = 22.9 bits (48), Expect = 6.1
 Identities = 5/66 (7%), Positives = 23/66 (34%), Gaps = 9/66 (13%)

Query: 11  YSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHL---------IDLCENGVNFIS 61
            ++              +S     I+ +    ++ R  +         ++L +  ++++ 
Sbjct: 135 LASDRHPQKLDGVSDRLVSRFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYLL 194

Query: 62  KSITNI 67
           ++  N+
Sbjct: 195 ENTKNV 200


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.143    0.477 

Gapped
Lambda     K      H
   0.267   0.0480    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 304,666
Number of extensions: 11520
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 77
Length of database: 2,407,596
Length adjustment: 44
Effective length of query: 33
Effective length of database: 1,803,476
Effective search space: 59514708
Effective search space used: 59514708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.5 bits)