BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1913
(535 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|B Chain B, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|C Chain C, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|D Chain D, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|E Chain E, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|F Chain F, Structure Of Human Glutamate Dehydrogenase-Apo Form
Length = 505
Score = 478 bits (1230), Expect = e-135, Method: Compositional matrix adjust.
Identities = 241/502 (48%), Positives = 331/502 (65%), Gaps = 7/502 (1%)
Query: 36 VPDKEN-PGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSL 94
V D+E+ P FF+ VE +F R + + +R R+ ++E R GI+ +++ + +
Sbjct: 4 VADREDDPNFFKMVEGFFDRGASIVEDKLVEDLRTRE-SEEQKRNRVRGILRIIKPCNHV 62
Query: 95 LEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCS 154
L + FP RRD G +E+I+ YR H H++P KGGIRY+ DV+ DEVKALA+LMTYK +
Sbjct: 63 LSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVV 122
Query: 155 NVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSW 214
+VPFGGAK G++I+P Y + ELE+ITR+F +EL KK ++GPGIDVPAPD +T REMSW
Sbjct: 123 DVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSW 182
Query: 215 FYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGL 274
D YA T+G +INA VTGKP+ GGI GR SATGRGVF E +N YM +G+
Sbjct: 183 IADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGM 242
Query: 275 EPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI 334
P +KT++VQGFGNVG H+ RY R AKC+A+ E D +I G I+ K+L +K+
Sbjct: 243 TPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDG--IDPKELEDFKL 300
Query: 335 TKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAA 394
G+I G+P K I+ DIL+PAA EK + KSNA +V+AKII E ANGP TP A
Sbjct: 301 QHGSILGFPKAKPYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEA 360
Query: 395 HAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXXXXXXXXXXX 454
+ L++N+++IPD++ NAGGVTVSYFEWLKN++H S GR++F Y+++
Sbjct: 361 DKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQES 420
Query: 455 XXXXFNK---KIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLD 511
F K I I +A ++DRIS A+EKDIV S L ++M+R+ R I+ A K + LD
Sbjct: 421 LERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLD 480
Query: 512 LRNAAYCSALFKIFKTYEEAGL 533
LR AAY +A+ K+FK Y EAG+
Sbjct: 481 LRTAAYVNAIEKVFKVYNEAGV 502
>pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|B Chain B, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|C Chain C, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|D Chain D, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|E Chain E, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|F Chain F, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETE|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETG|A Chain A, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|B Chain B, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|C Chain C, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|D Chain D, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|E Chain E, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|F Chain F, Glutamate Dehydrogenase Complexed With Gw5074
Length = 501
Score = 474 bits (1219), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/498 (47%), Positives = 328/498 (65%), Gaps = 6/498 (1%)
Query: 39 KENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQ 98
+++P FF+ VE +F R + + ++ R+ T+E R GI+ +++ + +L +
Sbjct: 4 EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRE-TEEQKRNRVRGILRIIKPCNHVLSLS 62
Query: 99 FPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPF 158
FP RRD G +E+I+ YR H H++P KGGIRY+ DV+ DEVKALA+LMTYK + +VPF
Sbjct: 63 FPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPF 122
Query: 159 GGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDA 218
GGAK G++I+P Y + ELE+ITR+F +EL KK ++GPG+DVPAPD +T REMSW D
Sbjct: 123 GGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADT 182
Query: 219 YAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCM 278
YA T+G +INA VTGKP+ GGI GR SATGRGVF E +N YM +G+ P
Sbjct: 183 YASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGF 242
Query: 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT 338
+KT+ VQGFGNVG H+ RY R AKC+A+ E D +I G I+ K+L +K+ GT
Sbjct: 243 GDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDG--IDPKELEDFKLQHGT 300
Query: 339 IKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAML 398
I G+P K I+ DIL+PAA EK + KSNA +V+AKII E ANGP TP A +
Sbjct: 301 ILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIF 360
Query: 399 LKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXXXXXXXXXXXXXXX 458
L++N+++IPD++ NAGGVTVSYFEWLKN++H S GR++F Y+++
Sbjct: 361 LERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERK 420
Query: 459 FNKK---IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNA 515
F K I I +A ++DRIS A+EKDIV S L ++M+R+ R I+ A K + LDLR A
Sbjct: 421 FGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTA 480
Query: 516 AYCSALFKIFKTYEEAGL 533
AY +A+ K+F+ Y EAG+
Sbjct: 481 AYVNAIEKVFRVYNEAGV 498
>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|B Chain B, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|C Chain C, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|D Chain D, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|E Chain E, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|F Chain F, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
Length = 496
Score = 474 bits (1219), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/496 (47%), Positives = 326/496 (65%), Gaps = 6/496 (1%)
Query: 41 NPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFP 100
+P FF+ VE +F R + + +R R+ ++E R GI+ +++ + +L + FP
Sbjct: 1 DPNFFKMVEGFFDRGASIVEDKLVEDLRTRE-SEEQKRNRVRGILRIIKPCNHVLSLSFP 59
Query: 101 FRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGG 160
RRD G +E+I+ YR H H++P KGGIRY+ DV+ DEVKALA+LMTYK + +VPFGG
Sbjct: 60 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 119
Query: 161 AKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYA 220
AK G++I+P Y + ELE+ITR+F +EL KK ++GPGIDVPAPD +T REMSW D YA
Sbjct: 120 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYA 179
Query: 221 KTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMEN 280
T+G +INA VTGKP+ GGI GR SATGRGVF E +N YM +G+ P +
Sbjct: 180 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 239
Query: 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIK 340
KT++VQGFGNVG H+ RY R AKC+A+ E D +I G I+ K+L +K+ G+I
Sbjct: 240 KTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDG--IDPKELEDFKLQHGSIL 297
Query: 341 GYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLK 400
G+P K I+ DIL+PAA EK + KSNA +V+AKII E ANGP TP A + L+
Sbjct: 298 GFPKAKPYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLE 357
Query: 401 KNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXXXXXXXXXXXXXXXFN 460
+N+++IPD++ NAGGVTVSYFEWLKN++H S GR++F Y+++ F
Sbjct: 358 RNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFG 417
Query: 461 K---KIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAY 517
K I I +A ++DRIS A+EKDIV S L ++M+ + R I+ A K + LDLR AAY
Sbjct: 418 KHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMEASARQIMRTAMKYNLGLDLRTAAY 477
Query: 518 CSALFKIFKTYEEAGL 533
+A+ K+FK Y EAG+
Sbjct: 478 VNAIEKVFKVYNEAGV 493
>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|G Chain G, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|H Chain H, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|I Chain I, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|J Chain J, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|K Chain K, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|L Chain L, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NR7|A Chain A, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|B Chain B, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|C Chain C, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|D Chain D, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|E Chain E, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|F Chain F, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|G Chain G, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|H Chain H, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|I Chain I, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|J Chain J, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|K Chain K, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|L Chain L, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
Length = 496
Score = 473 bits (1217), Expect = e-133, Method: Compositional matrix adjust.
Identities = 237/496 (47%), Positives = 326/496 (65%), Gaps = 6/496 (1%)
Query: 41 NPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFP 100
+P FF+ VE +F R + + +R R+ ++E R GI+ +++ + +L + FP
Sbjct: 1 DPNFFKMVEGFFDRGASIVEDKLVEDLRTRE-SEEQKRNRVRGILRIIKPCNHVLSLSFP 59
Query: 101 FRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGG 160
RRD G +E+I+ YR H ++P KGGIRY+ DV+ DEVKALA+LMTYK + +VPFGG
Sbjct: 60 IRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 119
Query: 161 AKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYA 220
AK G++I+P Y + ELE+ITR+F +EL KK ++GPGIDVPAPD +T REMSW D YA
Sbjct: 120 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYA 179
Query: 221 KTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMEN 280
T+G +INA VTGKP+ GGI GR SATGRGVF E +N YM +G+ P +
Sbjct: 180 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 239
Query: 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIK 340
KT++VQGFGNVG H+ RY R AKC+A+ E D +I G I+ K+L +K+ G+I
Sbjct: 240 KTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDG--IDPKELEDFKLQHGSIL 297
Query: 341 GYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLK 400
G+P K I+ DIL+PAA EK + KSNA +V+AKII E ANGP TP A + L+
Sbjct: 298 GFPKAKPYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLE 357
Query: 401 KNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXXXXXXXXXXXXXXXFN 460
+N+++IPD++ NAGGVTVSYFEWLKN++H S GR++F Y+++ F
Sbjct: 358 RNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFG 417
Query: 461 KK---IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAY 517
K I I +A ++DRIS A+EKDIV S L ++M+R+ R I+ A K + LDLR AAY
Sbjct: 418 KHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAY 477
Query: 518 CSALFKIFKTYEEAGL 533
+A+ K+FK Y EAG+
Sbjct: 478 VNAIEKVFKVYNEAGV 493
>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MVO|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVQ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3QMU|A Chain A, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|B Chain B, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|C Chain C, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|D Chain D, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|E Chain E, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|F Chain F, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|G Chain G, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|H Chain H, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|I Chain I, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|J Chain J, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|K Chain K, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|L Chain L, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
Length = 501
Score = 470 bits (1210), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/498 (46%), Positives = 326/498 (65%), Gaps = 6/498 (1%)
Query: 39 KENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQ 98
+++P FF+ VE +F R + + ++ R+ T+E R I+ +++ + +L +
Sbjct: 4 EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRE-TEEQKRNRVRSILRIIKPCNHVLSLS 62
Query: 99 FPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPF 158
FP RRD G +E+I+ YR H H++P KGGIRY+ DV+ DEVKALA+LMTYK + +VPF
Sbjct: 63 FPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPF 122
Query: 159 GGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDA 218
GGAK G++I+P Y + ELE+ITR+F +EL KK ++GPG+DVPAPD +T REMSW D
Sbjct: 123 GGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADT 182
Query: 219 YAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCM 278
YA T+G +INA VTGKP+ GGI GR SATGRGVF E +N YM +G+ P
Sbjct: 183 YASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGF 242
Query: 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT 338
+KT++VQGFGNVG H+ RY R AKC+ + E D +I G I+ K+L +K+ GT
Sbjct: 243 GDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDG--IDPKELEDFKLQHGT 300
Query: 339 IKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAML 398
I G+P K I+ DIL+PAA EK + KSNA +V+AKII E ANGP TP A +
Sbjct: 301 ILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIF 360
Query: 399 LKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXXXXXXXXXXXXXXX 458
L++N+++IPD++ NAGGVTVSYFEWL N++H S GR++F Y+++
Sbjct: 361 LERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERK 420
Query: 459 FNK---KIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNA 515
F K I I +A ++DRIS A+EKDIV S L ++M+R+ R I+ A K + LDLR A
Sbjct: 421 FGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTA 480
Query: 516 AYCSALFKIFKTYEEAGL 533
AY +A+ K+F+ Y EAG+
Sbjct: 481 AYVNAIEKVFRVYNEAGV 498
>pdb|1HWY|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWZ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
Length = 501
Score = 461 bits (1186), Expect = e-130, Method: Compositional matrix adjust.
Identities = 232/498 (46%), Positives = 325/498 (65%), Gaps = 6/498 (1%)
Query: 39 KENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQ 98
+++P FF+ VE +F R + + ++ R+ T E R GI+ +++ + +L +
Sbjct: 4 EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRQ-TQEQKRNRVRGILRIIKPCNHVLSLS 62
Query: 99 FPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPF 158
FP RRD G +E+I+ YR H ++P KGGIRY+ DV+ DEVKALA+LMTYK + +VPF
Sbjct: 63 FPIRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPF 122
Query: 159 GGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDA 218
GGAK G++I+P Y + +LE+ITR+F +EL KK ++GPG+DVPAP+ +T REMSW D
Sbjct: 123 GGAKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPAPNMSTGEREMSWIADT 182
Query: 219 YAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCM 278
YA T+G +INA VTGKP+ GGI GR SATGRGVF E + N YM +G+ P
Sbjct: 183 YASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFIENASYMSILGMTPGF 242
Query: 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT 338
+KT+ VQGFGNVG H+ RY R AKC+A+ E D +I G I+ K+L +K+ GT
Sbjct: 243 GDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDG--IDPKELEDFKLQHGT 300
Query: 339 IKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAML 398
I G+P K I+ DIL+PAA EK + KSNA +V+AKII E ANGP TP A +
Sbjct: 301 ILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPQADKIF 360
Query: 399 LKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXXXXXXXXXXXXXXX 458
L++N+++IPD++ NAGGVTVSYF+ LKN++H S GR++F Y+++
Sbjct: 361 LERNIMVIPDLYLNAGGVTVSYFQILKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERK 420
Query: 459 FNK---KIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNA 515
F K I I +A ++DRIS A+EKDIV S L ++M+R+ R I+ A K + LDLR A
Sbjct: 421 FGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTA 480
Query: 516 AYCSALFKIFKTYEEAGL 533
AY +A+ K+F+ Y EAG+
Sbjct: 481 AYVNAIEKVFRVYNEAGV 498
>pdb|1B26|A Chain A, Glutamate Dehydrogenase
pdb|1B26|B Chain B, Glutamate Dehydrogenase
pdb|1B26|C Chain C, Glutamate Dehydrogenase
pdb|1B26|D Chain D, Glutamate Dehydrogenase
pdb|1B26|E Chain E, Glutamate Dehydrogenase
pdb|1B26|F Chain F, Glutamate Dehydrogenase
Length = 416
Score = 282 bits (722), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 170/442 (38%), Positives = 249/442 (56%), Gaps = 66/442 (14%)
Query: 94 LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
+L ++FP R D G E+ YR H + P KGGIRY DV DEVKALA MT+K +
Sbjct: 37 VLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVKALAFWMTWKTAV 96
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
N+PFGG KGG+R+DP K + ELER++R+F E+ + +GP D+PAPD NT+A ++
Sbjct: 97 MNLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEI--QVIIGPYNDIPAPDVNTNADVIA 154
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
W+ D Y+ +G T LG+VTGKP+ LGG +GRE ATGRGV A + M +G
Sbjct: 155 WYMDTYSMNVGHT---VLGIVTGKPVELGGSKGREEATGRGVKVCAGLA------MDVLG 205
Query: 274 LEPCMENKTYIVQGFGNVG-FHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTY 332
++P + T VQGFGNVG F A + +K +A+ + I +G ++ ++L Y
Sbjct: 206 IDP--KKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDV--EELIRY 261
Query: 333 KITKGTIKGYP-GTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLT 391
K GT+ YP G + +++ VDILVPAA+E I NA++++AK +VE ANGP T
Sbjct: 262 KKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTT 321
Query: 392 PAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXXXXXXXX 451
P A +L ++ +L++PDI ANAGGVTVSYFEW++++ SF +D
Sbjct: 322 PEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQ-------SFFWDL---------- 364
Query: 452 XXXXXXXFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLD 511
D++ NA EK M+ A D+++ EK + +D
Sbjct: 365 ---------------------DQVRNALEK---------MMKGAFNDVMKVKEKYN--VD 392
Query: 512 LRNAAYCSALFKIFKTYEEAGL 533
+R AAY A+ ++ ++ G+
Sbjct: 393 MRTAAYILAIDRVAYATKKRGI 414
>pdb|1B3B|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
Length = 415
Score = 282 bits (721), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 169/442 (38%), Positives = 250/442 (56%), Gaps = 66/442 (14%)
Query: 94 LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
+L ++FP R D G E+ YR H + P KGGIRY DV DEVKALA MT+K +
Sbjct: 36 VLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVKALAFWMTWKTAV 95
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
++PFGG KGG+R+DP K + ELER++R+F E+ + +GP D+PAPD NT+A ++
Sbjct: 96 MDLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEI--QVIIGPYNDIPAPDVNTNADVIA 153
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
W+ D Y+ +G T LG+VTGKP+ LGG +GRE ATGRGV A + M +G
Sbjct: 154 WYMDTYSMNVGHT---VLGIVTGKPVELGGSKGREEATGRGVKVCAGLA------MDVLG 204
Query: 274 LEPCMENKTYIVQGFGNVG-FHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTY 332
++P + T VQGFGNVG F A + +K +A+ + I +G ++ ++L Y
Sbjct: 205 IDP--KKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDV--EELIRY 260
Query: 333 KITKGTIKGYP-GTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLT 391
K GT+ YP G + +++ VDILVPAA+E I NA++++AK +VE ANGP T
Sbjct: 261 KKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTT 320
Query: 392 PAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXXXXXXXX 451
P A +L ++ +L++PDI ANAGGVTVSYFEW++++ SF +D
Sbjct: 321 PEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQ-------SFFWDL---------- 363
Query: 452 XXXXXXXFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLD 511
D++ NA EK M++A D+++ EK + +D
Sbjct: 364 ---------------------DQVRNALEK---------MMKKAFNDVMKVKEKYN--VD 391
Query: 512 LRNAAYCSALFKIFKTYEEAGL 533
+R AAY A+ ++ ++ G+
Sbjct: 392 MRTAAYILAIDRVAYATKKRGI 413
>pdb|2TMG|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
Length = 415
Score = 264 bits (675), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 171/442 (38%), Positives = 249/442 (56%), Gaps = 66/442 (14%)
Query: 94 LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
+L ++FP R D G E+ YR H + P KGGIRY DV DEVKALA MT+K +
Sbjct: 36 VLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVKALAFWMTWKTAV 95
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
N+PFGG KGG+R+DP K + RELER++R+F E+ + +GP D+PAPD NT+A ++
Sbjct: 96 MNLPFGGGKGGVRVDPKKLSRRELERLSRRFFREI--QVIIGPYNDIPAPDVNTNADVIA 153
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
W+ D Y +G T LG+VTGKP+ LGG +GRE ATGRGV A + M +G
Sbjct: 154 WYMDEYEMNVGHT---VLGIVTGKPVELGGSKGREEATGRGVKVCAGLA------MDVLG 204
Query: 274 LEPCMENKTYIVQGFGNVG-FHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTY 332
++P + T VQGFGNVG F A + +K +A+ + I +G ++ ++L Y
Sbjct: 205 IDP--KKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDV--EELIRY 260
Query: 333 KITKGTIKGYP-GTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLT 391
K GT+ YP G + +++ VDILVPAA+E I NA++++AK +VE ANGP T
Sbjct: 261 KKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTT 320
Query: 392 PAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXXXXXXXX 451
P A +L ++ +L++PDI ANAGGVTVSYFEW++++ SF +D
Sbjct: 321 PEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQ-------SFFWDL---------- 363
Query: 452 XXXXXXXFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLD 511
D++ NA EK M+ A D+++ EK + +D
Sbjct: 364 ---------------------DQVRNALEK---------MMKGAFNDVMKVKEKYN--VD 391
Query: 512 LRNAAYCSALFKIFKTYEEAGL 533
+R AAY A+ ++ ++ G+
Sbjct: 392 MRTAAYILAIDRVAYATKKRGI 413
>pdb|3AOG|A Chain A, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|B Chain B, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|C Chain C, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|D Chain D, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|E Chain E, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|F Chain F, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|G Chain G, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|H Chain H, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|I Chain I, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|J Chain J, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|K Chain K, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|L Chain L, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
Length = 440
Score = 263 bits (672), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/336 (44%), Positives = 204/336 (60%), Gaps = 16/336 (4%)
Query: 94 LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
+L + P R D G + YR HH T + P KGG+RY +V EV ALA MT KN+
Sbjct: 62 VLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTLSEVMALAGWMTIKNAA 121
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
+P+GG KGGIR+DP K + ELER+TR++ E+ +GP D+PAPD NT REM+
Sbjct: 122 VGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEI--GILLGPDRDIPAPDVNTGEREMA 179
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
W D Y+ +G T G+VTGKP+ LGG GR ATGRGVF A +IG
Sbjct: 180 WMMDTYSMNVGRT---VPGVVTGKPIALGGSLGRRDATGRGVFITAAAAAE------KIG 230
Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK 333
L+ +E +QGFGNVG AAR F A+ +A+ +H + + G I+ DL +
Sbjct: 231 LQ--VEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAG--IDPYDLLRHV 286
Query: 334 ITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTP 392
G ++GYP + P D V+ LVPAA+EK I + NA +++A+I+ E ANGP TP
Sbjct: 287 QEFGGVRGYPKAEPLPAADFWGLPVEFLVPAALEKQITEQNAWRIRARIVAEGANGPTTP 346
Query: 393 AAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNIS 428
AA +LL+K VL++PD+ ANAGGVTVSYFEW+++ +
Sbjct: 347 AADDILLEKGVLVVPDVIANAGGVTVSYFEWVQDFN 382
>pdb|3AOE|A Chain A, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|B Chain B, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 424
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/336 (44%), Positives = 204/336 (60%), Gaps = 16/336 (4%)
Query: 94 LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
+L + P R D G + YR HH T + P KGG+RY +V EV ALA MT KN+
Sbjct: 46 VLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTLSEVMALAGWMTIKNAA 105
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
+P+GG KGGIR+DP K + ELER+TR++ E+ +GP D+PAPD NT REM+
Sbjct: 106 VGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEI--GILLGPDRDIPAPDVNTGEREMA 163
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
W D Y+ +G T G+VTGKP+ LGG GR ATGRGVF A +IG
Sbjct: 164 WMMDTYSMNVGRT---VPGVVTGKPIALGGSLGRRDATGRGVFITAAAAAE------KIG 214
Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK 333
L+ +E +QGFGNVG AAR F A+ +A+ +H + + G I+ DL +
Sbjct: 215 LQ--VEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAG--IDPYDLLRHV 270
Query: 334 ITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTP 392
G ++GYP + P D V+ LVPAA+EK I + NA +++A+I+ E ANGP TP
Sbjct: 271 QEFGGVRGYPKAEPLPAADFWGLPVEFLVPAALEKQITEQNAWRIRARIVAEGANGPTTP 330
Query: 393 AAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNIS 428
AA +LL+K VL++PD+ ANAGGVTVSYFEW+++ +
Sbjct: 331 AADDILLEKGVLVVPDVIANAGGVTVSYFEWVQDFN 366
>pdb|1GTM|A Chain A, Structure Of Glutamate Dehydrogenase
pdb|1GTM|B Chain B, Structure Of Glutamate Dehydrogenase
pdb|1GTM|C Chain C, Structure Of Glutamate Dehydrogenase
Length = 419
Score = 240 bits (613), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 131/341 (38%), Positives = 200/341 (58%), Gaps = 22/341 (6%)
Query: 94 LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
++E+ P D G ++ +R H + PTKGGIR+ + VKALAA MT+K +
Sbjct: 36 IVEVTIPVEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAV 95
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
++P+GG KGGI +DP K ++RE ER+ R + + + + P D+PAPD T+ + M+
Sbjct: 96 MDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAIY--DVISPYEDIPAPDVYTNPQIMA 153
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRG----VFTAAEILVNNEEYM 269
W D Y +T+ A G++TGKPL +GG GR AT RG + AA++L
Sbjct: 154 WMMDEY-ETISRRKTPAFGIITGKPLSIGGSLGRIEATARGASYTIREAAKVL------- 205
Query: 270 CEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRA-KCLAIVEHDTAIVPDKGTEINYKD 328
G + ++ KT +QG+GN G++ A+ K +A+ + I G +N +
Sbjct: 206 ---GWD-TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDG--LNADE 259
Query: 329 LHTYKITKGTIKGYPGTKSAPTDIMFD-KVDILVPAAIEKVIRKSNADKVQAKIIVEAAN 387
+ +K G++K +PG + + + + +VD+L PAAIE+VI K NAD ++AKI+ E AN
Sbjct: 260 VLKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITKKNADNIKAKIVAEVAN 319
Query: 388 GPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNIS 428
GP+TP A +L +K +L IPD NAGGVTVSYFEW++NI+
Sbjct: 320 GPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNIT 360
>pdb|3K92|A Chain A, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|B Chain B, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|C Chain C, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|D Chain D, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|E Chain E, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|F Chain F, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
Length = 424
Score = 229 bits (584), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 133/353 (37%), Positives = 201/353 (56%), Gaps = 19/353 (5%)
Query: 78 ALRRNG----IIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYAL 133
ALR+ G + LM+ +L ++ P + D+G ++ YR H PTKGG+R+
Sbjct: 28 ALRKLGYPGDMYELMKEPQRMLTVRIPVKMDNGSVKVFTGYRSQHNDAVGPTKGGVRFHP 87
Query: 134 DVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNY 193
+VN ++VKAL+ MT K +N+P+GG KGGI DP + ELER++R + +
Sbjct: 88 EVNEEKVKALSIWMTLKCGIANLPYGGGKGGIICDPRTMSFGELERLSRGYVRAI--SQI 145
Query: 194 VGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGR 253
VGP D+PAPD T+++ M+W D Y++ ++ G +TGKPL LGG +GRE+AT +
Sbjct: 146 VGPTKDIPAPDVYTNSQIMAWMMDEYSRL---REFDSPGFITGKPLVLGGSQGRETATAQ 202
Query: 254 GVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD 313
GV + EE + + G++ ++N I+QGFGN G A++ AK + I + +
Sbjct: 203 GV------TICIEEAVKKKGIK--LQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDAN 254
Query: 314 TAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSN 373
+ G +I Y L + + G + +++ DILVPAAI I N
Sbjct: 255 GGLYNPDGLDIPY--LLDKRDSFGMVTNLFTDVITNEELLEKDCDILVPAAISNQITAKN 312
Query: 374 ADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKN 426
A +QA I+VE ANGP T A +L ++ VL++PDI A+AGGVTVSYFEW++N
Sbjct: 313 AHNIQASIVVERANGPTTIDATKILNERGVLLVPDILASAGGVTVSYFEWVQN 365
>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|B Chain B, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|C Chain C, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|D Chain D, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|E Chain E, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|F Chain F, Glutamate Dehydrogenase From Thermococcus Litoralis
Length = 418
Score = 229 bits (583), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 123/337 (36%), Positives = 195/337 (57%), Gaps = 15/337 (4%)
Query: 94 LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
++E+ P D G ++ +R + + PTKGGIR+ + VKALAA MT+K +
Sbjct: 36 IVEVSIPVEMDDGSVKVFTGFRVQYNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAV 95
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
++P+GG KGG+ +P + ++RE ER+ R + + + + P D+PAPD T+ + M+
Sbjct: 96 MDLPYGGGKGGVICNPKEMSDREKERLARGYVRAIY--DVISPYTDIPAPDVYTNPQIMA 153
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
W D Y +T+ + G++TGKP +GGI R AT RG E +G
Sbjct: 154 WMMDEY-ETISRRKDPSFGVITGKPPSVGGIVARMDATARGASYTVR------EAAKALG 206
Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRA-KCLAIVEHDTAIVPDKGTEINYKDLHTY 332
++ ++ KT +QG+GN G++ A+ K +A+ + I G +N ++ +
Sbjct: 207 MD--LKGKTIAIQGYGNAGYYMAKIMSEEYGMKVVAVSDTKGGIYNPDG--LNADEVLAW 262
Query: 333 KITKGTIKGYPGTKSAPTDIMFD-KVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLT 391
K G++K +PG + + + + +VD+L P+AIE+VI K NAD ++AKI+ E ANGP T
Sbjct: 263 KKKTGSVKDFPGATNITNEELLELEVDVLAPSAIEEVITKKNADNIKAKIVAELANGPTT 322
Query: 392 PAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNIS 428
P A +L +K +LIIPD NAGGVTVSYFEW++NI+
Sbjct: 323 PEADEILYEKGILIIPDFLCNAGGVTVSYFEWVQNIT 359
>pdb|2YFQ|A Chain A, Crystal Structure Of Glutamate Dehydrogenase From
Peptoniphilus Asaccharolyticus
pdb|2YFQ|B Chain B, Crystal Structure Of Glutamate Dehydrogenase From
Peptoniphilus Asaccharolyticus
Length = 421
Score = 228 bits (582), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 136/346 (39%), Positives = 196/346 (56%), Gaps = 20/346 (5%)
Query: 87 LMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAAL 146
L++ ++EI P + D G ++ + +R H + P+KGG+R+ +VN DEVKAL+
Sbjct: 31 LLKEPQRVIEISIPVKMDDGTVKVFKGWRSAHSSAVGPSKGGVRFHPNVNMDEVKALSLW 90
Query: 147 MTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYN 206
MT+K +P+GG KGGI +DP++ + RELE+++R + L K Y+G ID+PAPD N
Sbjct: 91 MTFKGGALGLPYGGGKGGICVDPAELSERELEQLSRGWVRGLYK--YLGDRIDIPAPDVN 148
Query: 207 TSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNE 266
T+ + MSWF D Y K G +G TGKP+ GG GR ATG GV
Sbjct: 149 TNGQIMSWFVDEYVKLNGER--MDIGTFTGKPVAFGGSEGRNEATGFGVAVVV------R 200
Query: 267 EYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDT-----AIVPDKG 321
E G++ ME+ VQGFGNVG + R K AI E D A+ + G
Sbjct: 201 ESAKRFGIK--MEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENG 258
Query: 322 TEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDK-VDILVPAAIEKVIRKSNADKVQAK 380
I++K+L YK T+ G+PG + + + K DI+VPAA+E VI A + AK
Sbjct: 259 --IDFKELLAYKEANKTLIGFPGAERITDEEFWTKEYDIIVPAALENVITGERAKTINAK 316
Query: 381 IIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKN 426
++ EAANGP TP +L ++ + + PDI N+GGV VSY+EW++N
Sbjct: 317 LVCEAANGPTTPEGDKVLTERGINLTPDILTNSGGVLVSYYEWVQN 362
>pdb|3K8Z|A Chain A, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|B Chain B, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|C Chain C, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|D Chain D, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|E Chain E, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|F Chain F, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
Length = 423
Score = 228 bits (580), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 131/340 (38%), Positives = 196/340 (57%), Gaps = 16/340 (4%)
Query: 87 LMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAAL 146
L++ LL ++ P R D G ++ YR H+ + PTKGGIR+ +V EVKAL+
Sbjct: 41 LLKEPMRLLTVKIPVRMDDGSVKIFTGYRAHNDS-VGPTKGGIRFHPNVTEKEVKALSIW 99
Query: 147 MTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYN 206
M+ K ++P+GG KGGI DP + RELER++R + + VGP DVPAPD
Sbjct: 100 MSLKCGIIDLPYGGGKGGIVCDPRDMSFRELERLSRGYVRAI--SQIVGPTKDVPAPDVF 157
Query: 207 TSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNE 266
T+++ M+W D Y++ N+ G +TGKPL LGG GRESAT +GV +
Sbjct: 158 TNSQIMAWMMDEYSRI---DEFNSPGFITGKPLVLGGSHGRESATAKGVTICIK------ 208
Query: 267 EYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINY 326
E + G++ ++ +VQGFGN G + A++ AK + I + + +G +I+Y
Sbjct: 209 EAAKKRGID--IKGARVVVQGFGNAGSYLAKFMHDAGAKVVGISDAYGGLYDPEGLDIDY 266
Query: 327 KDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAA 386
L + + GT+ +++ DILVPAAIE I + NA ++AKI+VEAA
Sbjct: 267 --LLDRRDSFGTVTKLFNDTITNQELLELDCDILVPAAIENQITEENAHNIRAKIVVEAA 324
Query: 387 NGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKN 426
NGP T +L +++L++PD+ A+AGGVTVSYFEW++N
Sbjct: 325 NGPTTLEGTKILSDRDILLVPDVLASAGGVTVSYFEWVQN 364
>pdb|1EUZ|A Chain A, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|B Chain B, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|C Chain C, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|D Chain D, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|E Chain E, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|F Chain F, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
Length = 419
Score = 228 bits (580), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 125/339 (36%), Positives = 196/339 (57%), Gaps = 19/339 (5%)
Query: 94 LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
++E+ P D G ++ +R H + PTKGGIR+ VKALA MT+K +
Sbjct: 37 IVEVSVPIEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPAETLSTVKALATWMTWKVAV 96
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
++P+GG KGGI ++P + + RE ER+ R + + + +GP D+PAPD T+ + M
Sbjct: 97 VDLPYGGGKGGIIVNPKELSEREQERLARAYIRAVY--DVIGPWTDIPAPDVYTNPKIMG 154
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRG-VFTAAEILVNNEEYMCEI 272
W D Y +T+ A G++TGKPL +GG GR +AT +G +FT E +
Sbjct: 155 WMMDEY-ETIMRRKGPAFGVITGKPLSIGGSLGRGTATAQGAIFTI-------REAAKAL 206
Query: 273 GLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIV--PDKGTEINYKDLH 330
G++ ++ K VQG+GN G++ A+ + + V + PD ++ ++
Sbjct: 207 GID--LKGKKIAVQGYGNAGYYTAKLAKEQLGMTVVAVSDSRGGIYNPDG---LDPDEVL 261
Query: 331 TYKITKGTIKGYPGTKSAPTDIMFD-KVDILVPAAIEKVIRKSNADKVQAKIIVEAANGP 389
+K G++K +PG + + + + +VD+L PAAIE+VI + NAD ++AKI+ E ANGP
Sbjct: 262 KWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITEKNADNIKAKIVAEVANGP 321
Query: 390 LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNIS 428
+TP A +L +K +L IPD NAGGVTVSYFEW++NI+
Sbjct: 322 VTPEADDILREKGILQIPDFLCNAGGVTVSYFEWVQNIN 360
>pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|B Chain B, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|C Chain C, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|D Chain D, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|E Chain E, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|F Chain F, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
Length = 421
Score = 224 bits (571), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/343 (38%), Positives = 187/343 (54%), Gaps = 22/343 (6%)
Query: 94 LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
+L + P R D G +E+ + YR HC P KGG+R+ +V + ALA LMT KNS
Sbjct: 37 VLIVNIPVRLDGGGFEVFEGYRVQHCDVLGPYKGGVRFHPEVTLADDVALAILMTLKNSL 96
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
+ +P+GGAKG +R+DP K + RELE ++R +A + +G +D+PAPD T+A+ M+
Sbjct: 97 AGLPYGGAKGAVRVDPKKLSQRELEELSRGYARAIAP--LIGDVVDIPAPDVGTNAQIMA 154
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
W D Y+K G N G+ T KP L G RE ATG GV A +
Sbjct: 155 WMVDEYSKIKGY---NVPGVFTSKPPELWGNPVREYATGFGVAVATREMAKK-------- 203
Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK 333
L +E KT +QG GNVG A + + AK +A+ + + +G +N + + K
Sbjct: 204 LWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEG--LNVELIQKNK 261
Query: 334 ITKG-------TIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAA 386
G T K P I VDI VPAAIE VIR NA V+A+++VE A
Sbjct: 262 GLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAIENVIRGDNAGLVKARLVVEGA 321
Query: 387 NGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISH 429
NGP TP A +L ++ V+++PDI ANAGGV +SY EW++N+
Sbjct: 322 NGPTTPEAERILYERGVVVVPDILANAGGVIMSYLEWVENLQW 364
>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|F Chain F, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|C Chain C, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|D Chain D, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 419
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 114/335 (34%), Positives = 173/335 (51%), Gaps = 18/335 (5%)
Query: 94 LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
L+ + P D G+ + Q YR H + P KGG+R V + LAA MT K +
Sbjct: 45 LVTLSLPVVMDDGKVRIFQGYRVVHDIARGPAKGGVRLDPGVTLGQTAGLAAWMTLKAAV 104
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
++PFGGA GGI +DP + +ELER+ R++ EL+ +GP D+ PD + M+
Sbjct: 105 YDLPFGGAAGGIAVDPKGLSPQELERLVRRYTAELV--GLIGPDSDILGPDLGADQQVMA 162
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
W D Y+ T+GST G+VTGKP LGG GR+ A G G E L G
Sbjct: 163 WIMDTYSMTVGST---VPGVVTGKPHALGGSEGRDDAAGLGALLVLEALAKRR------G 213
Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK 333
L+ + +VQG G VG A + R + +A+ + +G ++ + L Y+
Sbjct: 214 LD--LRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVA-EVLSAYE 270
Query: 334 ITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPA 393
T G++ P AP ++ + ++LV AA E + A +VQA+ +VE AN L P
Sbjct: 271 AT-GSL---PRLDLAPEEVFGLEAEVLVLAAREGALDGDRARQVQAQAVVEVANFGLNPE 326
Query: 394 AHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNIS 428
A A LL K L++PD+ + GG+ SY EW+++++
Sbjct: 327 AEAYLLGKGALVVPDLLSGGGGLLASYLEWVQDLN 361
>pdb|1HRD|A Chain A, Glutamate Dehydrogenase
pdb|1HRD|B Chain B, Glutamate Dehydrogenase
pdb|1HRD|C Chain C, Glutamate Dehydrogenase
pdb|1BGV|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 168/345 (48%), Gaps = 26/345 (7%)
Query: 94 LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
++E + P+ D+G+ + YR P KGG+R+A VN +K L +K+S
Sbjct: 57 VIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSL 116
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
+ +P GGAKGG DP+ ++RE+ R + F EL + ++GP IDVPA D ARE+
Sbjct: 117 TTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYR--HIGPDIDVPAGDLGVGAREIG 174
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
+ Y Y K +G G++TGK GG R ATG G E ++ +E
Sbjct: 175 YMYGQYRKIVGGF---YNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHE------- 224
Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGT----EINYKDL 329
+ KT + GFGNV + AA+ AK + + D I +G +INY L
Sbjct: 225 -NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYM-L 282
Query: 330 HTYKITKGTIKGYP---GTKSAPTDIMF-DKVDILVPAAIEKVIRKSNADKVQA---KII 382
+ ++ Y G + P + + KVDI++P A + + A K+ A K
Sbjct: 283 EMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYY 342
Query: 383 VEAANGPLTPAAHAMLLKK-NVLIIPDIFANAGGVTVSYFEWLKN 426
+E AN P T A L+++ N+++ P NAGGV VS FE +N
Sbjct: 343 IEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQN 387
>pdb|1K89|A Chain A, K89l Mutant Of Glutamate Dehydrogenase
Length = 449
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/345 (31%), Positives = 167/345 (48%), Gaps = 26/345 (7%)
Query: 94 LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
++E + P+ D+G+ + YR P GG+R+A VN +K L +K+S
Sbjct: 57 VIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFLGFEQAFKDSL 116
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
+ +P GGAKGG DP+ ++RE+ R + F EL + ++GP IDVPA D ARE+
Sbjct: 117 TTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYR--HIGPDIDVPAGDLGVGARELG 174
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
+ Y Y K +G G++TGK GG R ATG G E ++ +E
Sbjct: 175 YMYGQYRKIVGGFYN---GVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHE------- 224
Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGT----EINYKDL 329
+ KT + GFGNV + AA+ AK + + D I +G +INY L
Sbjct: 225 -NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYM-L 282
Query: 330 HTYKITKGTIKGYP---GTKSAPTDIMF-DKVDILVPAAIEKVIRKSNADKVQA---KII 382
+ ++ Y G + P + + KVDI++P A + + A K+ A K
Sbjct: 283 EMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYY 342
Query: 383 VEAANGPLTPAAHAMLLKK-NVLIIPDIFANAGGVTVSYFEWLKN 426
+E AN P T A L+++ N+++ P NAGGV VS FE +N
Sbjct: 343 IEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQN 387
>pdb|1AUP|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 109/345 (31%), Positives = 166/345 (48%), Gaps = 26/345 (7%)
Query: 94 LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
++E + P+ D+G+ + YR P GG+R+A VN +K L +K+S
Sbjct: 57 VIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFLGFEQAFKDSL 116
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
+ +P GGAKGG DP+ ++RE+ R + F EL + ++GP IDVPA D ARE+
Sbjct: 117 TTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYR--HIGPDIDVPAGDLGVGAREIG 174
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
+ Y Y K +G G++TGK GG R ATG G E ++ +E
Sbjct: 175 YMYGQYRKIVGGF---YNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHE------- 224
Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGT----EINYKDL 329
+ KT + GFGNV + AA+ AK + + D I +G +INY L
Sbjct: 225 -NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYM-L 282
Query: 330 HTYKITKGTIKGYP---GTKSAPTDIMF-DKVDILVPAAIEKVIRKSNADKVQA---KII 382
+ ++ Y G + P + + KVDI++P A + + A K+ A K
Sbjct: 283 EMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYY 342
Query: 383 VEAANGPLTPAAHAMLLKK-NVLIIPDIFANAGGVTVSYFEWLKN 426
+E AN P T A L+++ N+++ P NAGGV V FE +N
Sbjct: 343 IEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVVGFEMSQN 387
>pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|B Chain B, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|C Chain C, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|D Chain D, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|E Chain E, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|F Chain F, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
Length = 456
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 105/350 (30%), Positives = 161/350 (46%), Gaps = 38/350 (10%)
Query: 94 LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
+++ + P+ D GE+++ + +R + + P KGG+R+ VN +K L +KNS
Sbjct: 67 VIQFRVPWINDKGEHKMNRGFRVQYNSVLGPYKGGLRFHPAVNLSVIKFLGFEQIFKNSL 126
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
+ +P GG KGG DP + E+ + + F L + Y+GP DVPA D RE+
Sbjct: 127 TTLPMGGGKGGSDFDPKGKSENEILKFCQSFMTNLFR--YIGPNTDVPAGDIGVGGREIG 184
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
+ + Y K S G++TGK + GG R ATG GV AE ++ +
Sbjct: 185 YLFGQYKKLKNSFE----GVLTGKNIKWGGSNIRAEATGYGVVYFAENVLKD-------- 232
Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKG---TEINY---- 326
L +ENK +V G GNV + A L + + + I+ G ++NY
Sbjct: 233 LNDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDI 292
Query: 327 -----KDLHTYKITKGTIKGYPGTK--SAPTDIMFDKVDILVPAAIEKVIRKSNAD---K 376
L Y T K + K + P DI F P A + I +++AD +
Sbjct: 293 KNNQRLRLKEYLKYSKTAKYFENQKPWNIPCDIAF-------PCATQNEINENDADLFIQ 345
Query: 377 VQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKN 426
+ K+IVE AN P A L + N+++ P ANAGGV VS E +N
Sbjct: 346 NKCKMIVEGANMPTHIKALHKLKQNNIILCPSKAANAGGVAVSGLEMSQN 395
>pdb|2YFH|A Chain A, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|B Chain B, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|C Chain C, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|D Chain D, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|E Chain E, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|F Chain F, Structure Of A Chimeric Glutamate Dehydrogenase
Length = 448
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 102/347 (29%), Positives = 153/347 (44%), Gaps = 28/347 (8%)
Query: 94 LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
++E + P+ D+G+ + YR P KGG+R+A VN +K L +K+S
Sbjct: 58 VIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSL 117
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
+ +P GGAKGG DP+ ++RE+ R + F EL + ++GP IDVPA D ARE+
Sbjct: 118 TTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYR--HIGPDIDVPAGDLGVGAREIG 175
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
+ Y Y K +G G++TGK GG R ATG G+ E ++
Sbjct: 176 YMYGQYRKIVGGFYN---GVLTGKARSFGGSLIRPEATGYGLVYFTEAMLKRHGM----- 227
Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKG-TEINYKDLHTY 332
E V G GNV +A A+ + + +V + G T+ L
Sbjct: 228 ---GFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEI 284
Query: 333 KITK-GTIKGYPG-------TKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQA---KI 381
K ++ G + Y P + VDI +P A + + A ++ A K
Sbjct: 285 KASRDGRVADYAKEFGLVYLEGQQPWSL---PVDIALPCATQNELDVDAAHQLIANGVKA 341
Query: 382 IVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNIS 428
+ E AN P T A + + VL P ANAGGV S E +N +
Sbjct: 342 VAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAA 388
>pdb|2BMA|A Chain A, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|B Chain B, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|C Chain C, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|D Chain D, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|E Chain E, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|F Chain F, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
Length = 470
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 104/351 (29%), Positives = 154/351 (43%), Gaps = 28/351 (7%)
Query: 97 IQF--PFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCS 154
IQF + D+G +C+R + + P KGG+R+ VN VK L +KNS +
Sbjct: 81 IQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFKNSLT 140
Query: 155 NVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSW 214
+ GG KGG DP ++ E+ + + F EL + ++GP DVPA D RE+ +
Sbjct: 141 GLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYR--HIGPCTDVPAGDIGVGGREIGY 198
Query: 215 FYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRG-VFTAAEILVNNEEYMCEIG 273
Y Y K + S N G +TGK + GG R ATG G V+ E+L +
Sbjct: 199 LYGQYKKIVNSFN----GTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKS--------- 245
Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIV-PDKGTEINYKDLHTY 332
L +E +T +V G GNV + + K L + + + + P+ T N + L
Sbjct: 246 LNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDL 305
Query: 333 K-ITKGTIKGYPGTKSAPTDIMFDK-----VDILVPAAIEKVIRKSNADKVQAK---IIV 383
K KG IK Y S +K + P A + + A +Q ++
Sbjct: 306 KEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKLLQKNGCILVG 365
Query: 384 EAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGR 434
E AN P T A + N++ P ANAGGV +S E +N S R
Sbjct: 366 EGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTR 416
>pdb|4FCC|A Chain A, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|B Chain B, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|C Chain C, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|D Chain D, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|E Chain E, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|F Chain F, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|G Chain G, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|H Chain H, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|I Chain I, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|J Chain J, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|K Chain K, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|L Chain L, Glutamate Dehydrogenase From E. Coli
pdb|4FHN|X Chain X, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 450
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 94/369 (25%), Positives = 152/369 (41%), Gaps = 29/369 (7%)
Query: 72 FTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRY 131
F +++ R+ ++ + +++ + + D + ++ + +R + P KGG+R+
Sbjct: 41 FLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQVQVNRAWRVQFSSAIGPYKGGMRF 100
Query: 132 ALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKK 191
VN +K L T+KN+ + +P GG KGG DP + E+ R + EL +
Sbjct: 101 HPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYR- 159
Query: 192 NYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESAT 251
++G DVPA D RE+ F K L + N + TGK L GG R AT
Sbjct: 160 -HLGADTDVPAGDIGVGGREVG-FMAGMMKKLSN---NTACVFTGKGLSFGGSLIRPEAT 214
Query: 252 GRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE 311
G G+ E ++ E V G GNV +A A+ + +
Sbjct: 215 GYGLVYFTEAMLKRHGM--------GFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASD 266
Query: 312 HDTAIVPDKG-TEINYKDLHTYKITK-GTIKGYPG-------TKSAPTDIMFDKVDILVP 362
+V + G T+ L K ++ G + Y P + VDI +P
Sbjct: 267 SSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLEGQQPWSV---PVDIALP 323
Query: 363 AAIEKVIRKSNADKVQA---KIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVS 419
A + + A ++ A K + E AN P T A + + VL P ANAGGV S
Sbjct: 324 CATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATS 383
Query: 420 YFEWLKNIS 428
E +N +
Sbjct: 384 GLEMAQNAA 392
>pdb|3SBO|A Chain A, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|B Chain B, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|C Chain C, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|D Chain D, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|E Chain E, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|F Chain F, Structure Of E.Coli Gdh From Native Source
pdb|2YFG|A Chain A, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|B Chain B, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|C Chain C, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|D Chain D, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|F Chain F, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 94/369 (25%), Positives = 152/369 (41%), Gaps = 29/369 (7%)
Query: 72 FTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRY 131
F +++ R+ ++ + +++ + + D + ++ + +R + P KGG+R+
Sbjct: 38 FLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRF 97
Query: 132 ALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKK 191
VN +K L T+KN+ + +P GG KGG DP + E+ R + EL +
Sbjct: 98 HPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYR- 156
Query: 192 NYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESAT 251
++G DVPA D RE+ F K L + N + TGK L GG R AT
Sbjct: 157 -HLGADTDVPAGDIGVGGREVG-FMAGMMKKLSN---NTACVFTGKGLSFGGSLIRPEAT 211
Query: 252 GRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE 311
G G+ E ++ E V G GNV +A A+ + +
Sbjct: 212 GYGLVYFTEAMLKRHGM--------GFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASD 263
Query: 312 HDTAIVPDKG-TEINYKDLHTYKITK-GTIKGYPG-------TKSAPTDIMFDKVDILVP 362
+V + G T+ L K ++ G + Y P + VDI +P
Sbjct: 264 SSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSL---PVDIALP 320
Query: 363 AAIEKVIRKSNADKVQA---KIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVS 419
A + + A ++ A K + E AN P T A + + VL P ANAGGV S
Sbjct: 321 CATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATS 380
Query: 420 YFEWLKNIS 428
E +N +
Sbjct: 381 GLEMAQNAA 389
>pdb|2YFG|E Chain E, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 94/367 (25%), Positives = 151/367 (41%), Gaps = 29/367 (7%)
Query: 72 FTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRY 131
F +++ R+ ++ + +++ + + D + ++ + +R + P KGG+R+
Sbjct: 38 FLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRF 97
Query: 132 ALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKK 191
VN +K L T+KN+ + +P GG KGG DP + E+ R + EL +
Sbjct: 98 HPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYR- 156
Query: 192 NYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESAT 251
++G DVPA D RE+ F K L + N + TGK L GG R AT
Sbjct: 157 -HLGADTDVPAGDIGVGGREVG-FMAGMMKKLSN---NTACVFTGKGLSFGGSLIRPEAT 211
Query: 252 GRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE 311
G G+ E ++ E V G GNV +A A+ + +
Sbjct: 212 GYGLVYFTEAMLKRHGM--------GFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASD 263
Query: 312 HDTAIVPDKG-TEINYKDLHTYKITK-GTIKGYPG-------TKSAPTDIMFDKVDILVP 362
+V + G T+ L K ++ G + Y P + VDI +P
Sbjct: 264 SSGLVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSL---PVDIALP 320
Query: 363 AAIEKVIRKSNADKVQA---KIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVS 419
A + + A ++ A K + E AN P T A + + VL P ANAGGV S
Sbjct: 321 CATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATS 380
Query: 420 YFEWLKN 426
E +N
Sbjct: 381 GLEMAQN 387
>pdb|1C1D|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nadh And L-Phenylalanine
Length = 355
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 139/373 (37%), Gaps = 85/373 (22%)
Query: 76 DIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYA--- 132
D AL +G M + + S+ F R DS T P GG R A
Sbjct: 3 DSALNWDGE-MTVTRFDSMTGAHFVIRLDS--------------TQLGPAAGGTRAAQYS 47
Query: 133 --LDVNPDEVKALAALMTYKNSCSNVPFGGAKGGI-------RIDPSKYNNRELERITRK 183
D D K LA MT K + SN+P GG K I IDPS + RI R
Sbjct: 48 QLADALTDAGK-LAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDPSTW-----ARILRI 101
Query: 184 FA--LELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFL 241
A ++ + NY PD NT++ +M D V G+ L
Sbjct: 102 HAENIDKLSGNY------WTGPDVNTNSADMDTLNDTTE------------FVFGRSLER 143
Query: 242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR 301
GG T GVF A + V + GL ++ T +VQG G VG A
Sbjct: 144 GGAGSSAFTTAVGVFEAMKATVAHR------GL-GSLDGLTVLVQGLGAVGGSLA----- 191
Query: 302 GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILV 361
++ + G ++ D T ++ G+ T A D++ D+
Sbjct: 192 -------------SLAAEAGAQLLVADTDTERVAHAVALGH--TAVALEDVLSTPCDVFA 236
Query: 362 PAAIEKVIRKSNADKVQAKIIVEAANGPLT-PAAHAMLLKKNVLIIPDIFANAGG----V 416
P A+ VI A + ++ AAN + AA +L + +L PD ANAGG V
Sbjct: 237 PCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLV 296
Query: 417 TVSYFEWLKNISH 429
W +++ H
Sbjct: 297 GREVLGWSESVVH 309
>pdb|1C1X|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And L-3-Phenyllactate
Length = 355
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 139/373 (37%), Gaps = 85/373 (22%)
Query: 76 DIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYA--- 132
D AL +G M + + S+ F R DS T P GG R A
Sbjct: 3 DSALNWDGE-MTVTRFDSMTGAHFVIRLDS--------------TQLGPAAGGTRAAQYS 47
Query: 133 --LDVNPDEVKALAALMTYKNSCSNVPFGGAKGGI-------RIDPSKYNNRELERITRK 183
D D K LA MT K + SN+P GG K I IDPS + RI R
Sbjct: 48 NLADALTDAGK-LAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDPSTW-----ARILRI 101
Query: 184 FA--LELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFL 241
A ++ + NY PD NT++ +M D V G+ L
Sbjct: 102 HAENIDKLSGNY------WTGPDVNTNSADMDTLNDTTE------------FVFGRSLER 143
Query: 242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR 301
GG T GVF A + V + GL ++ T +VQG G VG A
Sbjct: 144 GGAGSSAFTTAVGVFEAMKATVAHR------GL-GSLDGLTVLVQGLGAVGGSLA----- 191
Query: 302 GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILV 361
++ + G ++ D T ++ G+ T A D++ D+
Sbjct: 192 -------------SLAAEAGAQLLVADTDTERVAHAVALGH--TAVALEDVLSTPCDVFA 236
Query: 362 PAAIEKVIRKSNADKVQAKIIVEAANGPLT-PAAHAMLLKKNVLIIPDIFANAGG----V 416
P A+ VI A + ++ AAN + AA +L + +L PD ANAGG V
Sbjct: 237 PCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLV 296
Query: 417 TVSYFEWLKNISH 429
W +++ H
Sbjct: 297 GREVLGWSESVVH 309
>pdb|1BW9|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Phenylpyruvate
Length = 356
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 139/373 (37%), Gaps = 85/373 (22%)
Query: 76 DIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYA--- 132
D AL +G M + + S+ F R DS T P GG R A
Sbjct: 4 DSALNWDGE-MTVTRFDSMTGAHFVIRLDS--------------TQLGPAAGGTRAAQYS 48
Query: 133 --LDVNPDEVKALAALMTYKNSCSNVPFGGAKGGI-------RIDPSKYNNRELERITRK 183
D D K LA MT K + SN+P GG K I IDPS + RI R
Sbjct: 49 NLADALTDAGK-LAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDPSTW-----ARILRI 102
Query: 184 FA--LELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFL 241
A ++ + NY PD NT++ +M D V G+ L
Sbjct: 103 HAENIDKLSGNY------WTGPDVNTNSADMDTLNDTTE------------FVFGRSLER 144
Query: 242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR 301
GG T GVF A + V + GL ++ T +VQG G VG A
Sbjct: 145 GGAGSSAFTTAVGVFEAMKATVAHR------GL-GSLDGLTVLVQGLGAVGGSLA----- 192
Query: 302 GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILV 361
++ + G ++ D T ++ G+ T A D++ D+
Sbjct: 193 -------------SLAAEAGAQLLVADTDTERVAHAVALGH--TAVALEDVLSTPCDVFA 237
Query: 362 PAAIEKVIRKSNADKVQAKIIVEAANGPLT-PAAHAMLLKKNVLIIPDIFANAGG----V 416
P A+ VI A + ++ AAN + AA +L + +L PD ANAGG V
Sbjct: 238 PCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLV 297
Query: 417 TVSYFEWLKNISH 429
W +++ H
Sbjct: 298 GREVLGWSESVVH 310
>pdb|1C1D|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nadh And L-Phenylalanine
Length = 355
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 139/373 (37%), Gaps = 85/373 (22%)
Query: 76 DIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYA--- 132
D AL +G M + + ++ F R DS T P GG R A
Sbjct: 3 DSALNWDGE-MTVTRFDAMTGAHFVIRLDS--------------TQLGPAAGGTRAAQYS 47
Query: 133 --LDVNPDEVKALAALMTYKNSCSNVPFGGAKGGI-------RIDPSKYNNRELERITRK 183
D D K LA MT K + SN+P GG K I IDPS + RI R
Sbjct: 48 NLADALTDAGK-LAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDPSTW-----ARILRI 101
Query: 184 FA--LELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFL 241
A ++ + NY PD NT++ +M D V G+ L
Sbjct: 102 HAENIDKLSGNY------WTGPDVNTNSADMDTLNDTTE------------FVFGRSLER 143
Query: 242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR 301
GG T GVF A + V + GL ++ T +VQG G VG A
Sbjct: 144 GGAGSSAFTTAVGVFEAMKATVAHR------GL-GSLDGLTVLVQGLGAVGGSLA----- 191
Query: 302 GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILV 361
++ + G ++ D T ++ G+ T A D++ D+
Sbjct: 192 -------------SLAAEAGAQLLVADTDTERVAHAVALGH--TAVALEDVLSTPCDVFA 236
Query: 362 PAAIEKVIRKSNADKVQAKIIVEAANGPLT-PAAHAMLLKKNVLIIPDIFANAGG----V 416
P A+ VI A + ++ AAN + AA +L + +L PD ANAGG V
Sbjct: 237 PCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLV 296
Query: 417 TVSYFEWLKNISH 429
W +++ H
Sbjct: 297 GREVLGWSESVVH 309
>pdb|1BXG|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Beta-Phenylpropionate
Length = 356
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 133/348 (38%), Gaps = 74/348 (21%)
Query: 101 FRRDSGEYELIQCYRCHHCTHKSPTKGGIRYA-----LDVNPDEVKALAALMTYKNSCSN 155
F R +G + +I+ T P GG R A D D K LA MT K + SN
Sbjct: 18 FDRMTGAHFVIRL----DSTQLGPAAGGTRAAQYSQLADALTDAGK-LAGAMTLKMAVSN 72
Query: 156 VPFGGAKGGI-------RIDPSKYNNRELERITRKFA--LELIKKNYVGPGIDVPAPDYN 206
+P GG K I IDPS + RI R A ++ + NY PD N
Sbjct: 73 LPMGGGKSVIALPAPRHSIDPSTW-----ARILRIHAENIDKLSGNY------WTGPDVN 121
Query: 207 TSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNE 266
T++ +M D V G+ L GG T GVF A + V +
Sbjct: 122 TNSADMDTLNDTTE------------FVFGRSLERGGAGSSAFTTAVGVFEAMKATVAHR 169
Query: 267 EYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINY 326
GL ++ T +VQG G VG A ++ + G ++
Sbjct: 170 ------GL-GSLDGLTVLVQGLGAVGGSLA------------------SLAAEAGAQLLV 204
Query: 327 KDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAA 386
D T ++ G+ T A D++ D+ P A+ VI A + ++ AA
Sbjct: 205 ADTDTERVAHAVALGH--TAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAA 262
Query: 387 NGPLT-PAAHAMLLKKNVLIIPDIFANAGG----VTVSYFEWLKNISH 429
N + AA +L + +L PD ANAGG V W +++ H
Sbjct: 263 NNVIADEAASDILHARGILYAPDFVANAGGAIHLVGREVLGWSESVVH 310
>pdb|1C1X|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And L-3-Phenyllactate
Length = 355
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 138/373 (36%), Gaps = 85/373 (22%)
Query: 76 DIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYA--- 132
D AL +G M + + + F R DS T P GG R A
Sbjct: 3 DSALNWDGE-MTVTRFDKMTGAHFVIRLDS--------------TQLGPAAGGTRAAQYS 47
Query: 133 --LDVNPDEVKALAALMTYKNSCSNVPFGGAKGGI-------RIDPSKYNNRELERITRK 183
D D K LA MT K + SN+P GG K I IDPS + RI R
Sbjct: 48 QLADALTDAGK-LAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDPSTW-----ARILRI 101
Query: 184 FA--LELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFL 241
A ++ + NY PD NT++ +M D V G+ L
Sbjct: 102 HAENIDKLSGNY------WTGPDVNTNSADMDTLNDTTE------------FVFGRSLER 143
Query: 242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR 301
GG T GVF A + V + GL ++ T +VQG G VG A
Sbjct: 144 GGAGSSAFTTAVGVFEAMKATVAHR------GL-GSLDGLTVLVQGLGAVGGSLA----- 191
Query: 302 GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILV 361
++ + G ++ D T ++ G+ T A D++ D+
Sbjct: 192 -------------SLAAEAGAQLLVADTDTERVAHAVALGH--TAVALEDVLSTPCDVFA 236
Query: 362 PAAIEKVIRKSNADKVQAKIIVEAANGPLT-PAAHAMLLKKNVLIIPDIFANAGG----V 416
P A+ VI A + ++ AAN + AA +L + +L PD ANAGG V
Sbjct: 237 PCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLV 296
Query: 417 TVSYFEWLKNISH 429
W +++ H
Sbjct: 297 GREVLGWSESVVH 309
>pdb|1BXG|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Beta-Phenylpropionate
Length = 356
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 138/373 (36%), Gaps = 85/373 (22%)
Query: 76 DIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYA--- 132
D AL +G M + + S F R DS T P GG R A
Sbjct: 4 DSALNWDGE-MTVTRFDSKTGAHFVIRLDS--------------TQLGPAAGGTRAAQYS 48
Query: 133 --LDVNPDEVKALAALMTYKNSCSNVPFGGAKGGI-------RIDPSKYNNRELERITRK 183
D D K LA MT K + SN+P GG K I IDPS + RI R
Sbjct: 49 QLADALTDAGK-LAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDPSTW-----ARILRI 102
Query: 184 FA--LELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFL 241
A ++ + NY PD NT++ +M D V G+ L
Sbjct: 103 HAENIDKLSGNY------WTGPDVNTNSADMDTLNDTTE------------FVFGRSLER 144
Query: 242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR 301
GG T GVF A + V + GL ++ T +VQG G VG A
Sbjct: 145 GGAGSSAFTTAVGVFEAMKATVAHR------GL-GSLDGLTVLVQGLGAVGGSLA----- 192
Query: 302 GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILV 361
++ + G ++ D T ++ G+ T A D++ D+
Sbjct: 193 -------------SLAAEAGAQLLVADTDTERVAHAVALGH--TAVALEDVLSTPCDVFA 237
Query: 362 PAAIEKVIRKSNADKVQAKIIVEAANGPLT-PAAHAMLLKKNVLIIPDIFANAGG----V 416
P A+ VI A + ++ AAN + AA +L + +L PD ANAGG V
Sbjct: 238 PCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLV 297
Query: 417 TVSYFEWLKNISH 429
W +++ H
Sbjct: 298 GREVLGWSESVVH 310
>pdb|1BW9|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Phenylpyruvate
Length = 356
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 138/373 (36%), Gaps = 85/373 (22%)
Query: 76 DIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYA--- 132
D AL +G M + + + F R DS T P GG R A
Sbjct: 4 DSALNWDGE-MTVTRFDKMTGAHFVIRLDS--------------TQLGPAAGGTRAAQYS 48
Query: 133 --LDVNPDEVKALAALMTYKNSCSNVPFGGAKGGI-------RIDPSKYNNRELERITRK 183
D D K LA MT K + SN+P GG K I IDPS + RI R
Sbjct: 49 QLADALTDAGK-LAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDPSTW-----ARILRI 102
Query: 184 FA--LELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFL 241
A ++ + NY PD NT++ +M D V G+ L
Sbjct: 103 HAENIDKLSGNY------WTGPDVNTNSADMDTLNDTTE------------FVFGRSLER 144
Query: 242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR 301
GG T GVF A + V + GL ++ T +VQG G VG A
Sbjct: 145 GGAGSSAFTTAVGVFEAMKATVAHR------GL-GSLDGLTVLVQGLGAVGGSLA----- 192
Query: 302 GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILV 361
++ + G ++ D T ++ G+ T A D++ D+
Sbjct: 193 -------------SLAAEAGAQLLVADTDTERVAHAVALGH--TAVALEDVLSTPCDVFA 237
Query: 362 PAAIEKVIRKSNADKVQAKIIVEAANGPLT-PAAHAMLLKKNVLIIPDIFANAGG----V 416
P A+ VI A + ++ AAN + AA +L + +L PD ANAGG V
Sbjct: 238 PCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLV 297
Query: 417 TVSYFEWLKNISH 429
W +++ H
Sbjct: 298 GREVLGWSESVVH 310
>pdb|3VPX|A Chain A, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila.
pdb|3VPX|B Chain B, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila
Length = 364
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 124/336 (36%), Gaps = 56/336 (16%)
Query: 86 MLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKA--- 142
M Q+Y L+ Q + SG +I H T P GG R + +E
Sbjct: 7 MEHQDYEQLVICQ---DKASGLKAIIAI----HDTTLGPALGGTRMWTYASEEEAIEDAL 59
Query: 143 -LAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVP 201
LA MTYKN+ + + GG K I +P N E+ R ++ +E + Y+
Sbjct: 60 RLARGMTYKNAAAGLNLGGGKTVIIGNPKTDKNDEMFRAFGRY-IEGLNGRYI------T 112
Query: 202 APDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEI 261
A D T+ +M N+ VTG G T G++ +
Sbjct: 113 AEDVGTTEADMDLI-----------NLET-DYVTGTSAGAGSSGNPSPVTAYGIYYGMKA 160
Query: 262 LVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKG 321
E + + KT VQG GNV + Y AK +
Sbjct: 161 AAK------EAFGDDSLAGKTVAVQGVGNVAYALCEYLHEEGAKLII------------- 201
Query: 322 TEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKI 381
T+IN + + + + T +I + DI P A+ +I +++AK+
Sbjct: 202 TDINEEAVQR------AVDAFGATAVGINEIYSQEADIFAPCALGAIINDETIPQLKAKV 255
Query: 382 IVEAANGPLTPAAHAMLLKK-NVLIIPDIFANAGGV 416
I +AN L H L+ + ++ PD N+GGV
Sbjct: 256 IAGSANNQLKETRHGDLIHEMGIVYAPDYVINSGGV 291
>pdb|1LEH|A Chain A, Leucine Dehydrogenase From Bacillus Sphaericus
pdb|1LEH|B Chain B, Leucine Dehydrogenase From Bacillus Sphaericus
Length = 364
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 114/304 (37%), Gaps = 49/304 (16%)
Query: 118 HCTHKSPTKGGIRY----ALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYN 173
H T P GG R A + ++ LA MTYKN+ + + GG K I DP
Sbjct: 32 HDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVIIGDPFADK 91
Query: 174 NRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGM 233
N ++ R +F ++ + Y + A D T+ +M + +T T I+
Sbjct: 92 NEDMFRALGRF-IQGLNGRY------ITAEDVGTTVDDMDLIHQ---ETDYVTGISPAFG 141
Query: 234 VTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGF 293
+G P T GV+ + E + + +E VQG GNV
Sbjct: 142 SSGNP---------SPVTAYGVYRGMKAAA-KEAFGSD-----SLEGLAVSVQGLGNV-- 184
Query: 294 HAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIM 353
+A C + +V T++N + +G AP I
Sbjct: 185 --------AKALCKKLNTEGAKLVV---TDVNKAAVSAAVAEEGA------DAVAPNAIY 227
Query: 354 FDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKK-NVLIIPDIFAN 412
DI P A+ V+ +++AK+I +A+ L H L + ++ PD N
Sbjct: 228 GVTCDIFAPCALGAVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHELGIVYAPDYVIN 287
Query: 413 AGGV 416
AGGV
Sbjct: 288 AGGV 291
>pdb|3NT2|A Chain A, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor
pdb|3NT2|B Chain B, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor
pdb|3NT4|A Chain A, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor Nadh And Inositol
pdb|3NT4|B Chain B, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor Nadh And Inositol
pdb|3NT5|A Chain A, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor And Product
Inosose
pdb|3NT5|B Chain B, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor And Product
Inosose
Length = 344
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 14/76 (18%)
Query: 66 SIRARK--FTDEDIALRRNGIIMLMQNY----SSLLEIQFPFRRDSGEYELIQCYRCH-- 117
+I+A+K F ++ +A G + +++ L+++ F R DSG +L + H
Sbjct: 86 AIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRLVQVGFMRRYDSGYVQLKEALDNHVI 145
Query: 118 ------HCTHKSPTKG 127
HC H++PT G
Sbjct: 146 GEPLMIHCAHRNPTVG 161
>pdb|1KVZ|A Chain A, Solution Structure Of Cytotoxic Rc-Rnase4
Length = 107
Score = 28.9 bits (63), Expect = 6.7, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 237 KPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEP 276
K F+ + G A RGV +A++L N+E Y+ E ++P
Sbjct: 34 KNTFIYSLPGPVKALCRGVIFSADVLSNSEFYLAECNVKP 73
>pdb|3MZ0|A Chain A, Crystal Structure Of Apo Myo-Inositol Dehydrogenase From
Bacillus Subtilis
Length = 344
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 14/76 (18%)
Query: 66 SIRARK--FTDEDIALRRNGIIMLMQNY----SSLLEIQFPFRRDSGEYELIQCYRCH-- 117
+I+A+K F ++ +A G +++ L+++ F R DSG +L + H
Sbjct: 86 AIKAQKYVFCEKPLATTAEGCXRIVEEEIKVGKRLVQVGFXRRYDSGYVQLKEALDNHVI 145
Query: 118 ------HCTHKSPTKG 127
HC H++PT G
Sbjct: 146 GEPLXIHCAHRNPTVG 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,284,978
Number of Sequences: 62578
Number of extensions: 641876
Number of successful extensions: 1804
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1651
Number of HSP's gapped (non-prelim): 42
length of query: 535
length of database: 14,973,337
effective HSP length: 103
effective length of query: 432
effective length of database: 8,527,803
effective search space: 3684010896
effective search space used: 3684010896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)