Query psy1913
Match_columns 535
No_of_seqs 284 out of 1797
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 19:29:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14030 glutamate dehydrogena 100.0 6E-125 1E-129 1001.0 45.7 420 38-534 14-445 (445)
2 PLN02477 glutamate dehydrogena 100.0 1E-124 3E-129 993.3 46.7 407 43-533 2-409 (410)
3 COG0334 GdhA Glutamate dehydro 100.0 6E-125 1E-129 982.7 42.3 409 43-534 2-411 (411)
4 PRK09414 glutamate dehydrogena 100.0 1E-121 3E-126 977.7 45.6 419 39-534 19-445 (445)
5 PTZ00079 NADP-specific glutama 100.0 1E-118 2E-123 952.4 45.6 417 39-534 26-454 (454)
6 PRK14031 glutamate dehydrogena 100.0 8E-119 2E-123 954.7 44.6 417 39-534 15-444 (444)
7 KOG2250|consensus 100.0 6E-118 1E-122 935.5 39.4 491 26-534 10-512 (514)
8 PTZ00324 glutamate dehydrogena 100.0 1.7E-79 3.6E-84 693.7 39.3 398 79-534 460-926 (1002)
9 cd05313 NAD_bind_2_Glu_DH NAD( 100.0 3.8E-71 8.2E-76 553.4 25.7 242 235-533 1-254 (254)
10 PF00208 ELFV_dehydrog: Glutam 100.0 5.6E-62 1.2E-66 486.0 19.6 233 242-532 1-244 (244)
11 cd01076 NAD_bind_1_Glu_DH NAD( 100.0 2.3E-58 5.1E-63 455.5 24.7 226 242-526 1-227 (227)
12 cd05211 NAD_bind_Glu_Leu_Phe_V 100.0 6.6E-58 1.4E-62 449.6 22.9 216 250-525 1-217 (217)
13 PF02812 ELFV_dehydrog_N: Glu/ 100.0 1.4E-46 2.9E-51 342.9 12.9 130 91-222 1-130 (131)
14 cd01075 NAD_bind_Leu_Phe_Val_D 100.0 5.3E-42 1.1E-46 332.7 21.2 196 248-525 2-199 (200)
15 smart00839 ELFV_dehydrog Gluta 100.0 4.8E-29 1E-33 218.5 9.1 100 357-506 3-102 (102)
16 COG2902 NAD-specific glutamate 99.9 1.4E-21 3E-26 224.9 24.2 290 112-425 783-1161(1592)
17 PF05088 Bac_GDH: Bacterial NA 99.8 1.8E-18 4E-23 206.1 26.8 312 79-423 698-1097(1528)
18 PRK08374 homoserine dehydrogen 99.2 1.2E-11 2.7E-16 129.4 6.0 125 281-414 3-151 (336)
19 PRK06392 homoserine dehydrogen 99.2 8.4E-11 1.8E-15 122.8 8.9 116 282-422 2-126 (326)
20 PRK06270 homoserine dehydrogen 98.7 3.9E-08 8.5E-13 103.3 9.4 123 281-406 3-148 (341)
21 cd05191 NAD_bind_amino_acid_DH 98.3 6.8E-06 1.5E-10 69.5 9.7 84 250-386 1-86 (86)
22 PLN02700 homoserine dehydrogen 98.1 5.8E-06 1.3E-10 88.2 8.4 129 280-423 3-151 (377)
23 PRK06813 homoserine dehydrogen 98.1 5.9E-06 1.3E-10 87.3 7.4 121 281-406 3-145 (346)
24 PF00670 AdoHcyase_NAD: S-aden 97.8 6.7E-05 1.5E-09 71.5 7.8 82 277-380 20-103 (162)
25 COG0460 ThrA Homoserine dehydr 97.5 0.00018 3.9E-09 75.6 7.0 87 279-377 2-99 (333)
26 PRK09599 6-phosphogluconate de 97.5 0.0021 4.7E-08 66.2 14.7 192 282-516 2-207 (301)
27 cd01065 NAD_bind_Shikimate_DH 97.5 0.0026 5.7E-08 58.2 13.2 114 277-408 16-138 (155)
28 PRK09436 thrA bifunctional asp 97.4 0.00023 4.9E-09 83.2 7.3 87 279-369 464-560 (819)
29 TIGR02853 spore_dpaA dipicolin 97.4 0.00069 1.5E-08 69.9 9.7 106 277-406 148-259 (287)
30 PF03446 NAD_binding_2: NAD bi 97.2 0.00052 1.1E-08 64.5 5.9 106 281-407 2-117 (163)
31 PRK05476 S-adenosyl-L-homocyst 97.2 0.00059 1.3E-08 74.2 7.1 106 248-386 191-299 (425)
32 COG1023 Gnd Predicted 6-phosph 97.2 0.0059 1.3E-07 61.8 13.5 197 282-517 2-207 (300)
33 PRK09466 metL bifunctional asp 97.2 0.00062 1.3E-08 79.4 7.5 130 279-416 457-606 (810)
34 cd00401 AdoHcyase S-adenosyl-L 97.1 0.002 4.2E-08 70.0 8.9 112 270-406 194-308 (413)
35 PTZ00075 Adenosylhomocysteinas 97.0 0.0024 5.3E-08 70.2 8.6 97 268-388 244-343 (476)
36 PRK14175 bifunctional 5,10-met 97.0 0.0072 1.6E-07 62.6 11.6 95 247-389 137-233 (286)
37 PRK08306 dipicolinate synthase 96.9 0.0041 8.8E-08 64.5 9.3 106 277-406 149-260 (296)
38 PF03447 NAD_binding_3: Homose 96.8 0.00073 1.6E-08 59.8 2.5 88 287-417 1-95 (117)
39 PF02826 2-Hacid_dh_C: D-isome 96.8 0.0032 6.8E-08 60.2 6.9 107 276-404 32-147 (178)
40 TIGR00936 ahcY adenosylhomocys 96.7 0.0051 1.1E-07 66.6 8.1 91 277-389 192-285 (406)
41 TIGR01505 tartro_sem_red 2-hyd 96.6 0.047 1E-06 55.8 14.4 189 282-516 1-201 (291)
42 PRK11064 wecC UDP-N-acetyl-D-m 96.6 0.076 1.6E-06 57.6 16.5 199 281-520 4-248 (415)
43 cd01080 NAD_bind_m-THF_DH_Cycl 96.6 0.027 5.9E-07 54.0 11.4 96 246-389 22-119 (168)
44 TIGR00872 gnd_rel 6-phosphoglu 96.6 0.0067 1.5E-07 62.6 7.8 192 281-516 1-205 (298)
45 PLN02494 adenosylhomocysteinas 96.5 0.0044 9.5E-08 68.2 6.4 89 277-387 251-342 (477)
46 COG0373 HemA Glutamyl-tRNA red 96.5 0.13 2.8E-06 56.0 17.3 98 277-393 175-282 (414)
47 PRK15057 UDP-glucose 6-dehydro 96.5 0.063 1.4E-06 57.9 14.9 202 282-519 2-232 (388)
48 PRK14176 bifunctional 5,10-met 96.4 0.013 2.9E-07 60.7 8.9 50 247-308 143-193 (287)
49 TIGR01035 hemA glutamyl-tRNA r 96.4 0.051 1.1E-06 59.0 13.5 97 277-394 177-286 (417)
50 cd05311 NAD_bind_2_malic_enz N 96.3 0.025 5.4E-07 56.5 9.9 118 277-403 22-144 (226)
51 COG0111 SerA Phosphoglycerate 96.3 0.014 3.1E-07 61.4 8.4 90 277-390 139-237 (324)
52 PF03807 F420_oxidored: NADP o 96.2 0.0074 1.6E-07 51.1 5.0 86 282-388 1-96 (96)
53 PRK14189 bifunctional 5,10-met 96.2 0.021 4.6E-07 59.2 9.1 50 247-308 137-187 (285)
54 PRK00257 erythronate-4-phospha 96.2 0.038 8.3E-07 59.5 11.0 106 270-403 108-226 (381)
55 PF01488 Shikimate_DH: Shikima 96.1 0.017 3.6E-07 52.9 7.0 102 277-394 9-118 (135)
56 PRK07574 formate dehydrogenase 96.1 0.018 3.9E-07 62.0 8.2 106 277-404 189-304 (385)
57 PRK15461 NADH-dependent gamma- 96.1 0.017 3.8E-07 59.5 7.8 103 282-406 3-117 (296)
58 PLN03139 formate dehydrogenase 96.1 0.019 4E-07 62.0 8.1 106 277-404 196-311 (386)
59 PRK10792 bifunctional 5,10-met 96.0 0.024 5.3E-07 58.7 8.5 50 247-308 138-188 (285)
60 PRK13243 glyoxylate reductase; 96.0 0.019 4.2E-07 60.4 7.9 104 277-403 147-259 (333)
61 PRK14191 bifunctional 5,10-met 96.0 0.038 8.2E-07 57.4 9.7 50 247-308 136-186 (285)
62 PRK00676 hemA glutamyl-tRNA re 96.0 0.14 3.1E-06 54.4 14.2 89 277-389 171-264 (338)
63 COG0499 SAM1 S-adenosylhomocys 95.9 0.018 3.8E-07 61.3 6.8 105 248-384 188-293 (420)
64 PTZ00142 6-phosphogluconate de 95.9 0.018 4E-07 63.5 7.2 197 281-515 2-214 (470)
65 PRK11559 garR tartronate semia 95.8 0.03 6.4E-07 57.2 7.8 105 281-407 3-119 (296)
66 PRK12490 6-phosphogluconate de 95.8 0.026 5.7E-07 58.2 7.5 104 282-406 2-116 (299)
67 PRK08410 2-hydroxyacid dehydro 95.8 0.03 6.4E-07 58.5 7.9 107 277-409 142-257 (311)
68 PLN03129 NADP-dependent malic 95.7 0.26 5.7E-06 55.7 15.4 177 172-388 243-438 (581)
69 PRK13302 putative L-aspartate 95.7 0.034 7.5E-07 56.9 8.0 110 278-407 4-122 (271)
70 PF01262 AlaDh_PNT_C: Alanine 95.6 0.01 2.2E-07 56.2 3.6 34 275-308 15-48 (168)
71 PRK15059 tartronate semialdehy 95.6 0.23 5E-06 51.3 13.6 187 282-517 2-202 (292)
72 PRK13304 L-aspartate dehydroge 95.6 0.03 6.4E-07 57.1 6.9 105 281-406 2-117 (265)
73 COG0281 SfcA Malic enzyme [Ene 95.5 0.08 1.7E-06 57.4 10.2 122 249-388 176-302 (432)
74 TIGR00873 gnd 6-phosphoglucona 95.4 0.024 5.3E-07 62.5 6.2 193 283-514 2-210 (467)
75 PRK06436 glycerate dehydrogena 95.4 0.053 1.1E-06 56.6 8.2 101 277-403 119-228 (303)
76 PRK06932 glycerate dehydrogena 95.4 0.1 2.3E-06 54.6 10.4 101 277-404 144-253 (314)
77 PRK14178 bifunctional 5,10-met 95.4 0.089 1.9E-06 54.5 9.6 50 247-308 131-181 (279)
78 cd01078 NAD_bind_H4MPT_DH NADP 95.4 0.12 2.6E-06 49.6 10.0 123 251-395 7-139 (194)
79 PRK13529 malate dehydrogenase; 95.3 0.5 1.1E-05 53.3 15.9 185 172-389 218-420 (563)
80 PF01113 DapB_N: Dihydrodipico 95.2 0.011 2.5E-07 53.3 2.1 91 281-385 1-98 (124)
81 TIGR01692 HIBADH 3-hydroxyisob 95.2 0.33 7.1E-06 49.7 13.0 185 285-515 1-197 (288)
82 COG2084 MmsB 3-hydroxyisobutyr 95.1 0.048 1.1E-06 56.6 6.9 106 281-406 1-117 (286)
83 PRK14192 bifunctional 5,10-met 95.1 0.17 3.8E-06 52.4 10.9 52 248-312 139-191 (283)
84 PRK15438 erythronate-4-phospha 95.1 0.054 1.2E-06 58.3 7.4 155 270-461 108-280 (378)
85 COG1064 AdhP Zn-dependent alco 95.1 0.13 2.9E-06 54.6 10.1 38 270-310 160-197 (339)
86 PRK07232 bifunctional malic en 95.1 0.3 6.5E-06 57.0 13.7 125 249-393 162-293 (752)
87 PRK00048 dihydrodipicolinate r 95.1 0.051 1.1E-06 55.1 6.7 109 281-412 2-120 (257)
88 PRK06487 glycerate dehydrogena 95.1 0.11 2.4E-06 54.4 9.4 99 277-403 145-252 (317)
89 PF02882 THF_DHG_CYH_C: Tetrah 95.0 0.089 1.9E-06 50.2 7.8 51 246-308 14-65 (160)
90 PRK15469 ghrA bifunctional gly 95.0 0.062 1.3E-06 56.3 7.3 103 277-403 133-245 (312)
91 PRK12480 D-lactate dehydrogena 95.0 0.058 1.3E-06 56.9 7.0 101 277-403 143-253 (330)
92 PLN02928 oxidoreductase family 94.9 0.12 2.6E-06 54.9 9.2 114 277-403 156-281 (347)
93 PF13241 NAD_binding_7: Putati 94.8 0.03 6.5E-07 48.9 3.7 35 277-311 4-38 (103)
94 TIGR01532 E4PD_g-proteo D-eryt 94.8 0.19 4.1E-06 53.1 10.3 91 282-385 1-120 (325)
95 PRK14190 bifunctional 5,10-met 94.8 0.15 3.3E-06 52.9 9.4 49 248-308 138-187 (284)
96 PRK09310 aroDE bifunctional 3- 94.8 0.3 6.4E-06 54.1 12.3 122 250-407 314-437 (477)
97 PF10727 Rossmann-like: Rossma 94.8 0.035 7.6E-07 50.9 4.2 72 280-370 10-82 (127)
98 TIGR00507 aroE shikimate 5-deh 94.8 0.53 1.1E-05 47.9 13.2 127 251-406 100-234 (270)
99 PRK14194 bifunctional 5,10-met 94.8 0.12 2.6E-06 54.1 8.6 49 248-308 139-188 (301)
100 TIGR01327 PGDH D-3-phosphoglyc 94.7 0.06 1.3E-06 60.2 6.8 105 277-404 135-249 (525)
101 TIGR00518 alaDH alanine dehydr 94.7 0.053 1.2E-06 58.0 6.1 93 277-384 164-265 (370)
102 PRK12549 shikimate 5-dehydroge 94.7 0.44 9.6E-06 49.2 12.5 130 251-407 110-248 (284)
103 PRK15182 Vi polysaccharide bio 94.7 1.6 3.5E-05 47.7 17.4 203 280-518 6-242 (425)
104 PRK15409 bifunctional glyoxyla 94.7 0.072 1.6E-06 56.1 6.7 105 277-404 142-256 (323)
105 cd05213 NAD_bind_Glutamyl_tRNA 94.6 0.19 4.1E-06 52.4 9.7 74 278-369 176-251 (311)
106 PRK14172 bifunctional 5,10-met 94.6 0.15 3.1E-06 52.9 8.7 83 247-375 137-221 (278)
107 PLN02350 phosphogluconate dehy 94.6 0.084 1.8E-06 58.7 7.4 195 281-514 7-219 (493)
108 PRK14169 bifunctional 5,10-met 94.5 0.18 3.8E-06 52.4 9.1 51 246-308 134-185 (282)
109 cd00762 NAD_bind_malic_enz NAD 94.5 0.28 6E-06 50.3 10.3 109 269-389 16-144 (254)
110 cd05312 NAD_bind_1_malic_enz N 94.5 0.22 4.8E-06 51.6 9.7 109 269-388 16-142 (279)
111 COG0569 TrkA K+ transport syst 94.4 0.081 1.8E-06 52.8 6.2 111 281-411 1-124 (225)
112 PTZ00317 NADP-dependent malic 94.4 0.85 1.8E-05 51.5 14.7 180 173-388 221-418 (559)
113 PRK09424 pntA NAD(P) transhydr 94.4 0.057 1.2E-06 60.3 5.5 116 278-406 163-310 (509)
114 PRK06718 precorrin-2 dehydroge 94.4 0.073 1.6E-06 52.3 5.7 82 277-374 7-88 (202)
115 PRK14183 bifunctional 5,10-met 94.4 0.24 5.3E-06 51.4 9.7 53 247-312 136-189 (281)
116 COG0057 GapA Glyceraldehyde-3- 94.4 0.2 4.3E-06 53.0 9.1 97 281-387 2-123 (335)
117 PRK00258 aroE shikimate 5-dehy 94.4 0.74 1.6E-05 47.1 13.2 127 251-406 105-241 (278)
118 PRK14177 bifunctional 5,10-met 94.3 0.2 4.3E-06 52.0 8.9 50 247-308 138-188 (284)
119 PRK11790 D-3-phosphoglycerate 94.3 0.17 3.7E-06 54.9 8.7 32 277-308 148-179 (409)
120 PRK08300 acetaldehyde dehydrog 94.2 0.31 6.7E-06 51.1 10.2 114 279-409 3-132 (302)
121 PRK14166 bifunctional 5,10-met 94.2 0.22 4.7E-06 51.8 8.9 82 248-375 137-220 (282)
122 PRK14179 bifunctional 5,10-met 94.2 0.15 3.2E-06 53.1 7.5 50 247-308 137-187 (284)
123 TIGR01546 GAPDH-II_archae glyc 94.1 0.13 2.8E-06 54.6 7.1 90 283-386 1-107 (333)
124 PRK14188 bifunctional 5,10-met 94.1 0.18 4E-06 52.6 8.1 50 247-308 137-187 (296)
125 PRK13581 D-3-phosphoglycerate 94.0 0.12 2.6E-06 57.9 7.0 104 277-403 137-249 (526)
126 KOG1370|consensus 93.9 0.088 1.9E-06 55.2 5.2 81 278-379 212-293 (434)
127 PRK00045 hemA glutamyl-tRNA re 93.8 0.14 3E-06 55.6 7.0 100 277-394 179-289 (423)
128 PLN02712 arogenate dehydrogena 93.8 0.099 2.1E-06 60.2 6.0 108 277-406 366-481 (667)
129 PRK06719 precorrin-2 dehydroge 93.7 0.088 1.9E-06 49.7 4.6 34 277-310 10-43 (157)
130 PRK14186 bifunctional 5,10-met 93.7 0.29 6.3E-06 51.2 8.7 49 248-308 138-187 (297)
131 PRK14618 NAD(P)H-dependent gly 93.7 0.24 5.3E-06 51.5 8.3 110 280-404 4-130 (328)
132 PRK08223 hypothetical protein; 93.6 0.051 1.1E-06 56.5 3.0 118 278-406 25-148 (287)
133 TIGR03026 NDP-sugDHase nucleot 93.6 1.1 2.4E-05 48.4 13.4 28 281-308 1-28 (411)
134 PRK07680 late competence prote 93.6 0.14 3E-06 52.0 6.1 107 282-408 2-118 (273)
135 PF03949 Malic_M: Malic enzyme 93.6 0.18 3.9E-06 51.6 6.8 111 269-388 16-143 (255)
136 COG0169 AroE Shikimate 5-dehyd 93.5 1.4 3E-05 45.8 13.4 132 251-406 107-246 (283)
137 TIGR02356 adenyl_thiF thiazole 93.5 0.18 3.8E-06 49.4 6.4 36 278-313 19-54 (202)
138 PRK06349 homoserine dehydrogen 93.4 0.3 6.6E-06 53.2 8.7 34 280-313 3-46 (426)
139 COG1052 LdhA Lactate dehydroge 93.4 0.24 5.3E-06 52.2 7.7 104 277-403 143-255 (324)
140 TIGR01809 Shik-DH-AROM shikima 93.4 1.3 2.7E-05 45.7 12.7 130 251-406 106-251 (282)
141 COG1648 CysG Siroheme synthase 93.3 0.21 4.4E-06 49.7 6.6 82 277-374 9-90 (210)
142 PRK14167 bifunctional 5,10-met 93.3 0.42 9.1E-06 50.0 9.2 82 248-375 137-224 (297)
143 PRK14184 bifunctional 5,10-met 93.3 0.57 1.2E-05 48.8 10.1 50 247-308 136-190 (286)
144 PRK14170 bifunctional 5,10-met 93.3 0.66 1.4E-05 48.3 10.5 84 247-376 136-221 (284)
145 PRK12862 malic enzyme; Reviewe 93.2 0.6 1.3E-05 54.7 11.2 125 249-393 170-301 (763)
146 PRK12475 thiamine/molybdopteri 93.2 0.18 3.9E-06 53.5 6.3 36 278-313 22-57 (338)
147 PLN02353 probable UDP-glucose 93.1 2.6 5.6E-05 46.9 15.5 210 281-520 2-252 (473)
148 PRK14173 bifunctional 5,10-met 93.1 0.41 8.8E-06 49.9 8.7 50 247-308 134-184 (287)
149 PLN02516 methylenetetrahydrofo 93.1 0.41 9E-06 50.1 8.8 50 247-308 146-196 (299)
150 PLN00203 glutamyl-tRNA reducta 93.1 0.29 6.3E-06 54.9 8.1 104 277-395 263-379 (519)
151 TIGR02355 moeB molybdopterin s 93.1 0.045 9.8E-07 55.2 1.6 119 278-406 22-143 (240)
152 PRK08328 hypothetical protein; 93.1 0.08 1.7E-06 53.0 3.4 119 278-406 25-147 (231)
153 PLN02616 tetrahydrofolate dehy 93.1 0.38 8.2E-06 51.6 8.5 51 246-308 209-260 (364)
154 cd00755 YgdL_like Family of ac 93.1 0.071 1.5E-06 53.6 3.0 119 278-406 9-131 (231)
155 PRK05479 ketol-acid reductoiso 93.0 0.12 2.5E-06 54.9 4.6 32 277-308 14-45 (330)
156 PRK15116 sulfur acceptor prote 93.0 0.047 1E-06 56.2 1.7 36 278-313 28-63 (268)
157 PRK14182 bifunctional 5,10-met 93.0 0.42 9.2E-06 49.6 8.5 49 248-308 137-186 (282)
158 PRK14171 bifunctional 5,10-met 92.9 0.54 1.2E-05 49.0 9.2 50 247-308 138-188 (288)
159 PRK12491 pyrroline-5-carboxyla 92.8 0.22 4.8E-06 51.0 6.2 113 281-414 3-127 (272)
160 TIGR01470 cysG_Nterm siroheme 92.8 0.14 3.1E-06 50.4 4.6 34 277-310 6-39 (205)
161 PRK05690 molybdopterin biosynt 92.7 0.091 2E-06 53.1 3.2 36 278-313 30-65 (245)
162 COG1748 LYS9 Saccharopine dehy 92.6 0.28 6E-06 53.1 6.9 129 281-425 2-138 (389)
163 PLN02520 bifunctional 3-dehydr 92.6 1.7 3.7E-05 48.8 13.3 136 250-406 351-495 (529)
164 PRK07417 arogenate dehydrogena 92.5 0.23 5E-06 50.7 5.9 69 281-369 1-70 (279)
165 PF02737 3HCDH_N: 3-hydroxyacy 92.4 0.15 3.3E-06 49.1 4.2 27 282-308 1-27 (180)
166 cd00757 ThiF_MoeB_HesA_family 92.4 0.31 6.8E-06 48.4 6.6 36 278-313 19-54 (228)
167 PLN02256 arogenate dehydrogena 92.4 0.17 3.7E-06 52.8 4.9 87 278-387 34-128 (304)
168 PRK12861 malic enzyme; Reviewe 92.4 1.1 2.4E-05 52.5 11.7 172 179-393 120-297 (764)
169 PRK07530 3-hydroxybutyryl-CoA 92.3 0.35 7.6E-06 49.5 7.0 28 281-308 5-32 (292)
170 PRK07688 thiamine/molybdopteri 92.3 0.24 5.1E-06 52.6 5.8 36 278-313 22-57 (339)
171 PRK03659 glutathione-regulated 92.1 0.27 6E-06 55.8 6.5 111 281-411 401-521 (601)
172 TIGR00036 dapB dihydrodipicoli 92.1 0.4 8.7E-06 49.0 7.0 110 281-405 2-121 (266)
173 PF03721 UDPG_MGDP_dh_N: UDP-g 92.1 0.23 5E-06 48.1 5.0 116 281-411 1-155 (185)
174 PRK08605 D-lactate dehydrogena 92.0 0.44 9.6E-06 50.2 7.5 102 277-403 143-255 (332)
175 PRK14174 bifunctional 5,10-met 92.0 1.3 2.8E-05 46.4 10.6 50 247-308 138-192 (295)
176 PRK13535 erythrose 4-phosphate 92.0 1.3 2.9E-05 47.1 10.9 32 281-312 2-37 (336)
177 PRK14106 murD UDP-N-acetylmura 91.9 0.76 1.6E-05 49.7 9.4 31 278-308 3-33 (450)
178 PRK14180 bifunctional 5,10-met 91.9 0.65 1.4E-05 48.3 8.4 50 247-308 137-187 (282)
179 TIGR00561 pntA NAD(P) transhyd 91.9 0.42 9.2E-06 53.5 7.4 93 278-384 162-282 (511)
180 TIGR01915 npdG NADPH-dependent 91.8 0.27 5.8E-06 48.4 5.2 95 281-389 1-104 (219)
181 PRK14851 hypothetical protein; 91.8 0.11 2.4E-06 59.9 2.8 118 278-406 41-164 (679)
182 PRK14185 bifunctional 5,10-met 91.7 0.74 1.6E-05 48.1 8.6 50 247-308 136-190 (293)
183 PLN02688 pyrroline-5-carboxyla 91.7 0.43 9.3E-06 47.9 6.7 87 281-388 1-97 (266)
184 PRK14168 bifunctional 5,10-met 91.7 0.78 1.7E-05 48.0 8.7 49 248-308 141-194 (297)
185 PRK14187 bifunctional 5,10-met 91.6 0.56 1.2E-05 49.0 7.6 82 248-375 140-223 (294)
186 PRK09260 3-hydroxybutyryl-CoA 91.6 0.42 9.1E-06 48.9 6.6 40 281-333 2-41 (288)
187 PRK14982 acyl-ACP reductase; P 91.5 1.2 2.5E-05 47.6 9.9 132 250-421 133-272 (340)
188 PRK14193 bifunctional 5,10-met 91.5 0.74 1.6E-05 47.9 8.2 49 248-308 138-189 (284)
189 KOG2380|consensus 91.4 0.33 7.2E-06 51.7 5.6 63 280-364 52-116 (480)
190 PLN02858 fructose-bisphosphate 91.3 0.47 1E-05 59.0 7.7 106 280-406 4-122 (1378)
191 PRK08268 3-hydroxy-acyl-CoA de 91.3 0.47 1E-05 53.0 7.1 75 281-369 8-99 (507)
192 PF02254 TrkA_N: TrkA-N domain 91.3 0.5 1.1E-05 41.1 5.9 103 283-405 1-112 (116)
193 PRK08644 thiamine biosynthesis 91.3 0.5 1.1E-05 46.8 6.5 36 278-313 26-61 (212)
194 PRK06130 3-hydroxybutyryl-CoA 91.3 0.44 9.6E-06 49.1 6.4 106 281-399 5-128 (311)
195 PRK13940 glutamyl-tRNA reducta 91.2 0.94 2E-05 49.4 9.1 101 277-395 178-283 (414)
196 PLN02858 fructose-bisphosphate 91.1 0.52 1.1E-05 58.6 7.8 115 280-417 324-451 (1378)
197 PRK05808 3-hydroxybutyryl-CoA 91.1 0.46 9.9E-06 48.4 6.2 28 281-308 4-31 (282)
198 PRK13301 putative L-aspartate 91.0 0.38 8.3E-06 49.6 5.5 83 281-384 3-92 (267)
199 PRK06153 hypothetical protein; 91.0 0.44 9.6E-06 51.6 6.2 117 278-406 174-295 (393)
200 PLN02545 3-hydroxybutyryl-CoA 91.0 0.57 1.2E-05 48.0 6.8 28 281-308 5-32 (295)
201 PF00044 Gp_dh_N: Glyceraldehy 91.0 0.9 1.9E-05 43.0 7.6 32 282-313 2-34 (151)
202 cd01079 NAD_bind_m-THF_DH NAD 90.9 1.1 2.3E-05 44.4 8.2 140 248-421 33-184 (197)
203 PRK09496 trkA potassium transp 90.9 0.86 1.9E-05 49.1 8.4 110 277-404 228-345 (453)
204 COG0190 FolD 5,10-methylene-te 90.8 1.2 2.5E-05 46.4 8.8 50 247-308 135-185 (283)
205 COG0677 WecC UDP-N-acetyl-D-ma 90.8 0.92 2E-05 49.3 8.3 110 281-410 10-156 (436)
206 PRK13403 ketol-acid reductoiso 90.8 0.33 7.1E-06 51.5 4.8 35 277-311 13-47 (335)
207 PRK09496 trkA potassium transp 90.7 0.67 1.5E-05 49.9 7.4 93 281-387 1-101 (453)
208 PF01408 GFO_IDH_MocA: Oxidore 90.7 0.87 1.9E-05 39.6 6.9 84 281-384 1-92 (120)
209 KOG2018|consensus 90.7 0.66 1.4E-05 49.0 6.9 34 278-311 72-105 (430)
210 PRK04148 hypothetical protein; 90.7 0.44 9.5E-06 44.3 5.1 43 279-335 16-58 (134)
211 PRK13303 L-aspartate dehydroge 90.6 0.64 1.4E-05 47.5 6.8 106 281-406 2-117 (265)
212 COG0686 Ald Alanine dehydrogen 90.4 0.54 1.2E-05 49.6 6.0 48 277-337 165-212 (371)
213 PRK10669 putative cation:proto 90.4 0.59 1.3E-05 52.5 6.8 105 281-405 418-531 (558)
214 PRK02472 murD UDP-N-acetylmura 90.3 0.91 2E-05 49.0 8.0 34 278-312 3-36 (447)
215 PLN02897 tetrahydrofolate dehy 90.2 0.92 2E-05 48.4 7.7 83 247-375 193-277 (345)
216 PRK03369 murD UDP-N-acetylmura 90.2 1.3 2.9E-05 49.0 9.2 31 278-308 10-40 (488)
217 PLN02306 hydroxypyruvate reduc 90.1 0.38 8.2E-06 52.0 4.8 114 277-403 162-291 (386)
218 cd05212 NAD_bind_m-THF_DH_Cycl 90.1 3.1 6.8E-05 38.8 10.3 49 248-308 8-57 (140)
219 cd01483 E1_enzyme_family Super 90.1 0.24 5.3E-06 45.2 2.9 31 282-312 1-31 (143)
220 PRK03562 glutathione-regulated 90.1 0.58 1.3E-05 53.5 6.5 111 280-410 400-520 (621)
221 PRK06141 ornithine cyclodeamin 90.0 2.5 5.3E-05 44.2 10.6 113 279-408 124-242 (314)
222 PRK07877 hypothetical protein; 89.9 0.17 3.8E-06 58.7 2.2 129 278-422 105-240 (722)
223 PRK14852 hypothetical protein; 89.9 0.21 4.5E-06 59.6 2.8 118 278-406 330-453 (989)
224 PRK08762 molybdopterin biosynt 89.9 0.58 1.3E-05 50.1 6.0 36 278-313 133-168 (376)
225 PRK08289 glyceraldehyde-3-phos 89.8 0.79 1.7E-05 50.7 7.0 55 259-314 107-166 (477)
226 PRK05225 ketol-acid reductoiso 89.6 3.3 7.1E-05 46.0 11.5 31 277-307 33-63 (487)
227 PLN02272 glyceraldehyde-3-phos 89.6 3.2 6.8E-05 45.6 11.3 32 281-312 86-118 (421)
228 PRK08293 3-hydroxybutyryl-CoA 89.6 0.77 1.7E-05 47.0 6.4 28 281-308 4-31 (287)
229 PRK12749 quinate/shikimate deh 89.6 8.1 0.00018 40.1 13.9 133 251-407 107-254 (288)
230 PLN02358 glyceraldehyde-3-phos 89.6 2.7 5.8E-05 44.8 10.6 33 281-313 6-39 (338)
231 PRK05597 molybdopterin biosynt 89.6 0.78 1.7E-05 48.9 6.6 36 278-313 26-61 (355)
232 TIGR02279 PaaC-3OHAcCoADH 3-hy 89.4 0.74 1.6E-05 51.4 6.5 38 281-331 6-43 (503)
233 PRK07819 3-hydroxybutyryl-CoA 89.3 0.81 1.8E-05 47.2 6.4 38 281-331 6-43 (286)
234 PRK07531 bifunctional 3-hydrox 89.3 0.91 2E-05 50.4 7.1 28 281-308 5-32 (495)
235 TIGR01534 GAPDH-I glyceraldehy 89.2 3.2 7E-05 44.0 10.8 31 282-312 1-34 (327)
236 PRK08507 prephenate dehydrogen 89.1 0.82 1.8E-05 46.4 6.2 81 282-384 2-89 (275)
237 PF13380 CoA_binding_2: CoA bi 89.0 1.7 3.7E-05 38.9 7.5 98 281-408 1-109 (116)
238 TIGR00465 ilvC ketol-acid redu 88.8 0.62 1.4E-05 49.0 5.1 33 278-310 1-33 (314)
239 smart00846 Gp_dh_N Glyceraldeh 88.6 5.1 0.00011 37.6 10.7 32 281-312 1-33 (149)
240 PLN02712 arogenate dehydrogena 88.6 0.6 1.3E-05 53.9 5.3 31 279-309 51-81 (667)
241 PRK11880 pyrroline-5-carboxyla 88.4 0.87 1.9E-05 45.7 5.8 105 281-408 3-118 (267)
242 PRK07679 pyrroline-5-carboxyla 88.3 0.85 1.8E-05 46.5 5.7 100 279-398 2-111 (279)
243 PRK07066 3-hydroxybutyryl-CoA 88.2 1.1 2.4E-05 47.3 6.5 28 281-308 8-35 (321)
244 KOG0023|consensus 88.2 3.3 7.1E-05 44.1 9.8 131 269-403 174-322 (360)
245 PF01210 NAD_Gly3P_dh_N: NAD-d 88.2 1.3 2.9E-05 41.3 6.4 82 282-377 1-89 (157)
246 PRK14181 bifunctional 5,10-met 88.1 2 4.4E-05 44.8 8.2 49 248-308 133-186 (287)
247 PRK06476 pyrroline-5-carboxyla 88.1 1.2 2.5E-05 44.9 6.3 106 282-408 2-117 (258)
248 PRK06522 2-dehydropantoate 2-r 88.0 2.1 4.5E-05 43.4 8.3 97 281-393 1-107 (304)
249 COG0345 ProC Pyrroline-5-carbo 87.8 1.1 2.4E-05 46.1 6.2 114 281-415 2-125 (266)
250 KOG0022|consensus 87.8 0.89 1.9E-05 48.1 5.4 97 238-364 166-270 (375)
251 PLN02819 lysine-ketoglutarate 87.6 1.1 2.3E-05 54.3 6.6 120 279-414 568-708 (1042)
252 PLN03096 glyceraldehyde-3-phos 87.5 4.1 8.9E-05 44.4 10.5 32 281-312 61-95 (395)
253 PRK00094 gpsA NAD(P)H-dependen 87.4 1.3 2.7E-05 45.6 6.3 108 281-401 2-123 (325)
254 PRK00066 ldh L-lactate dehydro 87.3 0.86 1.9E-05 47.8 5.1 26 279-304 5-30 (315)
255 PRK05717 oxidoreductase; Valid 87.2 1.6 3.4E-05 43.0 6.7 35 275-309 5-40 (255)
256 PF07991 IlvN: Acetohydroxy ac 87.2 0.67 1.5E-05 44.6 3.8 31 278-308 2-32 (165)
257 PRK04207 glyceraldehyde-3-phos 87.2 5.4 0.00012 42.4 11.0 92 281-386 2-110 (341)
258 PRK08265 short chain dehydroge 87.2 1.1 2.4E-05 44.5 5.6 33 277-309 3-36 (261)
259 PRK07878 molybdopterin biosynt 87.1 1.4 3.1E-05 47.5 6.8 36 278-313 40-75 (392)
260 COG2085 Predicted dinucleotide 87.0 1.6 3.5E-05 43.6 6.5 91 281-388 2-95 (211)
261 PRK08229 2-dehydropantoate 2-r 87.0 1.7 3.7E-05 45.2 7.1 103 281-400 3-122 (341)
262 PRK15425 gapA glyceraldehyde-3 87.0 5.6 0.00012 42.3 10.9 87 281-377 3-109 (331)
263 PRK07729 glyceraldehyde-3-phos 86.9 5.7 0.00012 42.5 10.9 94 281-386 3-121 (343)
264 PRK01438 murD UDP-N-acetylmura 86.9 3.1 6.8E-05 45.5 9.3 32 277-308 13-44 (480)
265 PF00899 ThiF: ThiF family; I 86.8 0.71 1.5E-05 41.8 3.6 34 280-313 2-35 (135)
266 TIGR01921 DAP-DH diaminopimela 86.8 0.97 2.1E-05 47.9 5.1 34 280-313 3-37 (324)
267 PRK07403 glyceraldehyde-3-phos 86.7 5.2 0.00011 42.7 10.5 32 281-312 2-36 (337)
268 PTZ00023 glyceraldehyde-3-phos 86.7 4.1 8.9E-05 43.5 9.7 95 281-386 3-122 (337)
269 PRK06949 short chain dehydroge 86.7 1.9 4.1E-05 42.1 6.9 35 276-310 5-40 (258)
270 COG1712 Predicted dinucleotide 86.5 1.5 3.3E-05 44.4 6.0 78 281-378 1-82 (255)
271 PRK11579 putative oxidoreducta 86.5 3.1 6.6E-05 43.7 8.7 32 281-312 5-38 (346)
272 PRK05472 redox-sensing transcr 86.3 1.4 3E-05 43.4 5.7 41 270-313 77-119 (213)
273 KOG0068|consensus 86.2 0.74 1.6E-05 49.0 3.8 32 277-308 143-174 (406)
274 PRK07340 ornithine cyclodeamin 86.0 11 0.00023 39.4 12.3 110 279-406 124-238 (304)
275 PRK07502 cyclohexadienyl dehyd 86.0 1.5 3.2E-05 45.3 5.9 69 280-368 6-78 (307)
276 PF00056 Ldh_1_N: lactate/mala 85.9 1.2 2.6E-05 41.2 4.7 28 281-308 1-31 (141)
277 PRK06928 pyrroline-5-carboxyla 85.9 1.5 3.1E-05 45.0 5.7 115 281-414 2-127 (277)
278 PRK08655 prephenate dehydrogen 85.8 1.4 2.9E-05 48.4 5.8 87 281-387 1-93 (437)
279 PRK12550 shikimate 5-dehydroge 85.5 19 0.00041 37.2 13.6 122 251-406 106-236 (272)
280 KOG0069|consensus 85.5 2.6 5.6E-05 44.9 7.5 32 277-308 159-190 (336)
281 TIGR03366 HpnZ_proposed putati 85.1 6.7 0.00014 39.5 10.1 30 279-308 120-150 (280)
282 PRK12826 3-ketoacyl-(acyl-carr 85.0 1.5 3.2E-05 42.5 5.1 33 278-310 4-37 (251)
283 PRK07634 pyrroline-5-carboxyla 84.9 2.5 5.4E-05 41.7 6.8 111 279-410 3-125 (245)
284 PRK05600 thiamine biosynthesis 84.9 1.5 3.3E-05 47.1 5.5 36 278-313 39-74 (370)
285 PRK07523 gluconate 5-dehydroge 84.8 2.4 5.1E-05 41.6 6.5 33 277-309 7-40 (255)
286 KOG0409|consensus 84.7 1.5 3.2E-05 46.1 5.1 66 279-364 34-99 (327)
287 PRK06129 3-hydroxyacyl-CoA deh 84.6 2.6 5.7E-05 43.6 7.1 28 281-308 3-30 (308)
288 PRK06849 hypothetical protein; 84.6 1.2 2.7E-05 47.3 4.8 32 279-310 3-35 (389)
289 PRK14620 NAD(P)H-dependent gly 84.6 2.6 5.6E-05 43.8 7.0 95 282-389 2-109 (326)
290 PRK09880 L-idonate 5-dehydroge 84.6 4.6 9.9E-05 41.9 8.8 30 279-308 169-199 (343)
291 PRK08339 short chain dehydroge 84.4 2.6 5.7E-05 42.0 6.8 33 277-309 5-38 (263)
292 PRK05867 short chain dehydroge 84.4 2.6 5.5E-05 41.4 6.6 32 278-309 7-39 (253)
293 COG2130 Putative NADP-dependen 84.4 3.7 8.1E-05 43.3 7.9 95 278-386 149-250 (340)
294 PRK12921 2-dehydropantoate 2-r 84.4 3.1 6.7E-05 42.3 7.3 94 281-390 1-106 (305)
295 PRK05562 precorrin-2 dehydroge 84.3 1.4 3.1E-05 44.3 4.7 83 277-375 22-104 (223)
296 cd08281 liver_ADH_like1 Zinc-d 84.2 5.6 0.00012 41.8 9.4 30 279-308 191-221 (371)
297 PF00070 Pyr_redox: Pyridine n 84.1 4.8 0.0001 33.0 7.1 42 282-328 1-42 (80)
298 PRK06182 short chain dehydroge 84.1 1.7 3.7E-05 43.3 5.2 32 279-310 2-34 (273)
299 TIGR01832 kduD 2-deoxy-D-gluco 84.0 1.7 3.7E-05 42.3 5.1 33 278-310 3-36 (248)
300 PRK06035 3-hydroxyacyl-CoA deh 83.8 2.1 4.5E-05 43.9 5.8 28 281-308 4-31 (291)
301 PRK14806 bifunctional cyclohex 83.8 1.6 3.4E-05 50.6 5.4 109 281-410 4-123 (735)
302 COG2344 AT-rich DNA-binding pr 83.8 2 4.3E-05 42.5 5.2 44 267-313 74-119 (211)
303 cd08239 THR_DH_like L-threonin 83.7 5.1 0.00011 41.1 8.7 31 279-309 163-194 (339)
304 PRK12828 short chain dehydroge 83.7 1.9 4.1E-05 41.3 5.2 33 278-310 5-38 (239)
305 COG1250 FadB 3-hydroxyacyl-CoA 83.7 2.1 4.6E-05 45.0 5.8 76 280-368 3-94 (307)
306 COG1179 Dinucleotide-utilizing 83.6 1.2 2.6E-05 45.6 3.8 35 278-312 28-62 (263)
307 PRK08217 fabG 3-ketoacyl-(acyl 83.3 3 6.4E-05 40.4 6.4 33 278-310 3-36 (253)
308 COG0673 MviM Predicted dehydro 83.2 7.2 0.00016 40.0 9.6 107 280-405 3-121 (342)
309 PTZ00353 glycosomal glyceralde 83.1 9.6 0.00021 40.8 10.5 31 281-311 3-34 (342)
310 COG0773 MurC UDP-N-acetylmuram 82.7 4.8 0.0001 44.6 8.3 99 282-432 9-108 (459)
311 PRK06841 short chain dehydroge 82.7 2.2 4.8E-05 41.6 5.3 34 277-310 12-46 (255)
312 TIGR02354 thiF_fam2 thiamine b 82.6 1.7 3.7E-05 42.7 4.4 36 278-313 19-54 (200)
313 PRK07060 short chain dehydroge 82.5 2.2 4.7E-05 41.3 5.1 34 277-310 6-40 (245)
314 PRK06046 alanine dehydrogenase 82.4 5.7 0.00012 41.7 8.6 111 280-406 129-244 (326)
315 PRK07774 short chain dehydroge 82.3 2.3 5E-05 41.3 5.2 33 278-310 4-37 (250)
316 PRK06545 prephenate dehydrogen 82.0 1.7 3.7E-05 46.1 4.5 28 281-308 1-28 (359)
317 PRK05872 short chain dehydroge 81.9 3.4 7.4E-05 42.0 6.5 46 277-335 6-52 (296)
318 PRK06057 short chain dehydroge 81.9 3.4 7.4E-05 40.6 6.3 32 278-309 5-37 (255)
319 PRK00141 murD UDP-N-acetylmura 81.8 2.9 6.3E-05 46.1 6.3 34 277-311 12-45 (473)
320 PRK05876 short chain dehydroge 81.8 3.4 7.4E-05 41.6 6.4 32 277-308 3-35 (275)
321 PRK01390 murD UDP-N-acetylmura 81.8 3.1 6.7E-05 45.3 6.5 34 278-312 7-40 (460)
322 COG0771 MurD UDP-N-acetylmuram 81.7 2.9 6.4E-05 46.2 6.3 126 278-422 5-154 (448)
323 PRK05447 1-deoxy-D-xylulose 5- 81.7 3.8 8.3E-05 44.5 7.0 116 281-407 2-146 (385)
324 PRK08177 short chain dehydroge 81.6 2.5 5.4E-05 40.8 5.1 30 281-310 2-32 (225)
325 PRK13394 3-hydroxybutyrate deh 81.6 3.5 7.5E-05 40.3 6.2 34 277-310 4-38 (262)
326 PRK12936 3-ketoacyl-(acyl-carr 81.6 3 6.4E-05 40.3 5.7 32 277-308 3-35 (245)
327 cd01492 Aos1_SUMO Ubiquitin ac 81.6 1.6 3.5E-05 42.7 3.8 36 278-313 19-54 (197)
328 PTZ00431 pyrroline carboxylate 81.4 1.7 3.7E-05 44.0 4.1 104 279-410 2-116 (260)
329 cd05291 HicDH_like L-2-hydroxy 81.4 1.9 4.2E-05 44.7 4.6 28 281-308 1-30 (306)
330 TIGR03215 ac_ald_DH_ac acetald 81.2 2.5 5.4E-05 44.0 5.2 91 281-389 2-101 (285)
331 PRK04690 murD UDP-N-acetylmura 81.1 2.1 4.5E-05 47.2 4.9 34 278-312 6-39 (468)
332 TIGR01202 bchC 2-desacetyl-2-h 81.1 2.2 4.7E-05 43.8 4.8 33 279-311 144-176 (308)
333 PF03435 Saccharop_dh: Sacchar 81.0 1.2 2.6E-05 47.4 2.9 113 283-414 1-127 (386)
334 PRK08628 short chain dehydroge 81.0 2.7 5.8E-05 41.2 5.2 34 277-310 4-38 (258)
335 PRK09186 flagellin modificatio 80.9 3.8 8.2E-05 40.0 6.2 32 278-309 2-34 (256)
336 PRK12429 3-hydroxybutyrate deh 80.9 4.1 8.9E-05 39.6 6.4 33 278-310 2-35 (258)
337 PRK06125 short chain dehydroge 80.8 4 8.7E-05 40.2 6.4 34 277-310 4-38 (259)
338 PTZ00082 L-lactate dehydrogena 80.8 1.8 3.9E-05 45.5 4.1 34 279-313 5-39 (321)
339 COG0300 DltE Short-chain dehyd 80.7 3.6 7.9E-05 42.4 6.2 79 278-369 4-97 (265)
340 PRK06138 short chain dehydroge 80.7 2.6 5.7E-05 40.9 5.0 33 278-310 3-36 (252)
341 cd01485 E1-1_like Ubiquitin ac 80.6 2 4.3E-05 42.0 4.1 36 278-313 17-52 (198)
342 PRK07231 fabG 3-ketoacyl-(acyl 80.4 2.9 6.4E-05 40.4 5.2 33 278-310 3-36 (251)
343 PRK12938 acetyacetyl-CoA reduc 80.3 3 6.6E-05 40.5 5.3 34 278-311 1-35 (246)
344 PLN02240 UDP-glucose 4-epimera 80.3 2.7 5.9E-05 43.3 5.2 33 278-310 3-36 (352)
345 PRK12742 oxidoreductase; Provi 80.1 3.2 7E-05 39.9 5.4 32 278-309 4-36 (237)
346 PLN02206 UDP-glucuronate decar 80.0 2.5 5.4E-05 46.3 5.0 32 279-310 118-150 (442)
347 PRK07576 short chain dehydroge 80.0 4.4 9.5E-05 40.3 6.4 33 278-310 7-40 (264)
348 PRK10637 cysG siroheme synthas 79.9 2.3 4.9E-05 46.9 4.7 34 277-310 9-42 (457)
349 COG1063 Tdh Threonine dehydrog 79.8 4.1 8.8E-05 43.1 6.4 74 280-365 169-247 (350)
350 cd01491 Ube1_repeat1 Ubiquitin 79.7 4.3 9.2E-05 42.3 6.4 36 278-313 17-52 (286)
351 PRK07831 short chain dehydroge 79.7 4.4 9.6E-05 39.9 6.3 31 278-308 15-47 (262)
352 PRK07326 short chain dehydroge 79.7 5.2 0.00011 38.5 6.7 33 278-310 4-37 (237)
353 PLN02653 GDP-mannose 4,6-dehyd 79.7 3.1 6.7E-05 43.0 5.4 34 277-310 3-37 (340)
354 TIGR02622 CDP_4_6_dhtase CDP-g 79.7 2.8 6E-05 43.6 5.1 33 278-310 2-35 (349)
355 PRK12548 shikimate 5-dehydroge 79.7 5.3 0.00011 41.3 7.1 131 252-406 110-256 (289)
356 PRK07062 short chain dehydroge 79.7 4.4 9.5E-05 40.0 6.3 33 277-309 5-38 (265)
357 PRK07063 short chain dehydroge 79.7 4.6 0.0001 39.7 6.4 33 277-309 4-37 (260)
358 PRK09072 short chain dehydroge 79.6 4.5 9.8E-05 39.9 6.3 33 278-310 3-36 (263)
359 PRK02006 murD UDP-N-acetylmura 79.6 2.6 5.5E-05 46.6 5.0 35 278-313 5-39 (498)
360 PRK06194 hypothetical protein; 79.5 4.3 9.3E-05 40.5 6.2 32 278-309 4-36 (287)
361 PRK12939 short chain dehydroge 79.4 5.2 0.00011 38.7 6.6 33 277-309 4-37 (250)
362 PRK14619 NAD(P)H-dependent gly 79.2 2.8 6E-05 43.4 4.9 30 279-308 3-32 (308)
363 PRK06124 gluconate 5-dehydroge 79.2 5.1 0.00011 39.2 6.5 34 277-310 8-42 (256)
364 PRK06197 short chain dehydroge 79.2 3 6.6E-05 42.4 5.1 35 276-310 12-47 (306)
365 PRK08945 putative oxoacyl-(acy 79.0 4.6 0.0001 39.4 6.1 33 278-310 10-43 (247)
366 PRK14027 quinate/shikimate deh 79.0 5.3 0.00011 41.4 6.8 128 251-406 110-249 (283)
367 PRK06079 enoyl-(acyl carrier p 78.8 3.6 7.8E-05 40.7 5.4 33 277-309 4-39 (252)
368 PRK06523 short chain dehydroge 78.7 3.5 7.6E-05 40.5 5.2 34 277-310 6-40 (260)
369 PRK12829 short chain dehydroge 78.7 5.4 0.00012 39.0 6.5 33 278-310 9-42 (264)
370 PRK07890 short chain dehydroge 78.7 5 0.00011 39.1 6.3 32 278-309 3-35 (258)
371 PRK08703 short chain dehydroge 78.6 3.8 8.2E-05 39.8 5.3 34 277-310 3-37 (239)
372 PRK05786 fabG 3-ketoacyl-(acyl 78.4 3.7 8E-05 39.6 5.2 33 278-310 3-36 (238)
373 PRK06500 short chain dehydroge 78.4 6.3 0.00014 38.1 6.8 32 278-309 4-36 (249)
374 PRK07806 short chain dehydroge 78.2 3.9 8.6E-05 39.7 5.4 33 278-310 4-37 (248)
375 PRK00436 argC N-acetyl-gamma-g 78.2 5.9 0.00013 42.0 7.0 94 281-389 3-102 (343)
376 PRK07035 short chain dehydroge 78.1 5.6 0.00012 38.8 6.4 34 277-310 5-39 (252)
377 PRK06172 short chain dehydroge 78.1 5.6 0.00012 38.8 6.4 34 277-310 4-38 (253)
378 PRK11730 fadB multifunctional 78.1 3.8 8.2E-05 47.8 6.0 38 281-331 314-351 (715)
379 PRK08642 fabG 3-ketoacyl-(acyl 78.1 3.9 8.5E-05 39.7 5.3 33 278-310 3-36 (253)
380 PRK15181 Vi polysaccharide bio 78.0 3.2 7E-05 43.3 5.0 34 278-311 13-47 (348)
381 PRK01710 murD UDP-N-acetylmura 78.0 3 6.5E-05 45.6 4.9 34 278-312 12-45 (458)
382 PRK06196 oxidoreductase; Provi 78.0 5.3 0.00011 41.0 6.5 34 277-310 23-57 (315)
383 PRK05557 fabG 3-ketoacyl-(acyl 77.8 4.3 9.3E-05 38.9 5.4 34 278-311 3-37 (248)
384 PRK08085 gluconate 5-dehydroge 77.7 6.1 0.00013 38.7 6.6 31 278-308 7-38 (254)
385 KOG0455|consensus 77.7 3 6.6E-05 43.0 4.4 42 279-320 2-52 (364)
386 PRK05866 short chain dehydroge 77.7 5.2 0.00011 40.8 6.3 34 277-310 37-71 (293)
387 PRK07067 sorbitol dehydrogenas 77.6 5.8 0.00013 38.9 6.4 32 278-309 4-36 (257)
388 PRK07825 short chain dehydroge 77.6 5.5 0.00012 39.5 6.3 33 277-309 2-35 (273)
389 PRK05875 short chain dehydroge 77.5 3.9 8.5E-05 40.6 5.2 33 278-310 5-38 (276)
390 PRK09620 hypothetical protein; 77.4 3.9 8.4E-05 41.1 5.1 34 278-311 1-51 (229)
391 TIGR02437 FadB fatty oxidation 77.3 4.1 8.8E-05 47.6 5.9 39 281-332 314-352 (714)
392 PRK08264 short chain dehydroge 77.2 4 8.6E-05 39.4 5.0 33 278-310 4-38 (238)
393 PRK08993 2-deoxy-D-gluconate 3 77.1 3.9 8.5E-05 40.3 5.0 33 277-309 7-40 (253)
394 TIGR03325 BphB_TodD cis-2,3-di 77.1 6.1 0.00013 39.0 6.4 32 278-309 3-35 (262)
395 PRK07814 short chain dehydroge 77.1 6.3 0.00014 39.0 6.5 33 278-310 8-41 (263)
396 PLN02237 glyceraldehyde-3-phos 77.0 18 0.00039 40.1 10.3 32 281-312 76-110 (442)
397 COG0287 TyrA Prephenate dehydr 76.9 6.6 0.00014 40.7 6.8 27 280-306 3-29 (279)
398 PRK06300 enoyl-(acyl carrier p 76.8 3.9 8.4E-05 42.5 5.1 33 276-308 4-39 (299)
399 TIGR03628 arch_S11P archaeal r 76.8 13 0.00028 33.9 7.7 65 243-314 36-108 (114)
400 PRK08416 7-alpha-hydroxysteroi 76.8 4.3 9.4E-05 40.1 5.3 34 277-310 5-39 (260)
401 PF13460 NAD_binding_10: NADH( 76.7 3.9 8.3E-05 38.0 4.6 30 283-312 1-31 (183)
402 cd08230 glucose_DH Glucose deh 76.6 3.7 8E-05 42.7 4.9 32 279-310 172-203 (355)
403 PRK08063 enoyl-(acyl carrier p 76.4 4.6 0.0001 39.2 5.3 33 278-310 2-35 (250)
404 PRK08263 short chain dehydroge 76.3 4.7 0.0001 40.2 5.4 32 279-310 2-34 (275)
405 PLN02695 GDP-D-mannose-3',5'-e 76.3 3.8 8.2E-05 43.5 5.0 32 279-310 20-52 (370)
406 PRK06550 fabG 3-ketoacyl-(acyl 76.3 4.5 9.8E-05 38.9 5.1 34 277-310 2-36 (235)
407 PRK12937 short chain dehydroge 76.2 4.8 0.0001 38.9 5.3 33 278-310 3-36 (245)
408 COG5322 Predicted dehydrogenas 76.2 9.3 0.0002 40.0 7.4 53 249-309 144-197 (351)
409 smart00859 Semialdhyde_dh Semi 76.2 6.7 0.00015 34.6 5.8 32 282-313 1-34 (122)
410 PLN02896 cinnamyl-alcohol dehy 76.2 4.7 0.0001 42.0 5.5 34 278-311 8-42 (353)
411 PRK06505 enoyl-(acyl carrier p 76.1 4.6 0.0001 40.7 5.3 33 277-309 4-39 (271)
412 PRK07411 hypothetical protein; 76.1 3.1 6.7E-05 45.0 4.3 36 278-313 36-71 (390)
413 PRK12859 3-ketoacyl-(acyl-carr 76.0 4.4 9.6E-05 40.0 5.1 33 277-309 3-38 (256)
414 PRK08955 glyceraldehyde-3-phos 76.0 28 0.00061 37.1 11.3 31 281-311 3-34 (334)
415 PRK12748 3-ketoacyl-(acyl-carr 75.9 4.3 9.4E-05 39.9 4.9 33 278-310 3-38 (256)
416 PRK12771 putative glutamate sy 75.8 3.5 7.6E-05 46.4 4.7 33 278-311 135-167 (564)
417 PRK08862 short chain dehydroge 75.7 7.3 0.00016 38.3 6.5 33 277-309 2-35 (227)
418 PRK09607 rps11p 30S ribosomal 75.7 14 0.00031 34.4 7.9 65 243-314 43-115 (132)
419 PRK05653 fabG 3-ketoacyl-(acyl 75.7 4.9 0.00011 38.5 5.2 33 278-310 3-36 (246)
420 PLN02662 cinnamyl-alcohol dehy 75.6 3.9 8.4E-05 41.5 4.7 32 279-310 3-35 (322)
421 PRK09242 tropinone reductase; 75.5 7.1 0.00015 38.3 6.4 34 277-310 6-40 (257)
422 PLN02730 enoyl-[acyl-carrier-p 75.5 4.8 0.0001 42.0 5.4 34 275-308 4-40 (303)
423 PLN02572 UDP-sulfoquinovose sy 75.3 4.4 9.6E-05 44.3 5.3 38 273-310 40-78 (442)
424 cd05292 LDH_2 A subgroup of L- 75.3 6.6 0.00014 40.9 6.4 31 281-311 1-32 (308)
425 TIGR03206 benzo_BadH 2-hydroxy 75.3 8 0.00017 37.4 6.6 32 278-309 1-33 (250)
426 PRK09287 6-phosphogluconate de 75.2 6.1 0.00013 43.8 6.3 186 291-514 1-202 (459)
427 PLN00198 anthocyanidin reducta 75.1 4.5 9.6E-05 41.8 5.0 33 278-310 7-40 (338)
428 PF02558 ApbA: Ketopantoate re 75.0 4.8 0.0001 36.6 4.7 94 283-392 1-107 (151)
429 PRK06398 aldose dehydrogenase; 75.0 5.1 0.00011 39.7 5.2 34 277-310 3-37 (258)
430 KOG1196|consensus 75.0 13 0.00028 39.4 8.2 98 279-389 153-257 (343)
431 PRK08594 enoyl-(acyl carrier p 74.9 4.9 0.00011 40.0 5.1 32 278-309 5-39 (257)
432 PRK06935 2-deoxy-D-gluconate 3 74.8 5.2 0.00011 39.4 5.2 34 277-310 12-46 (258)
433 PF02629 CoA_binding: CoA bind 74.8 3.6 7.8E-05 35.4 3.6 34 280-313 3-37 (96)
434 PRK06567 putative bifunctional 74.8 3.6 7.8E-05 49.6 4.7 33 278-310 381-413 (1028)
435 PRK07577 short chain dehydroge 74.8 5.4 0.00012 38.3 5.2 33 279-311 2-35 (234)
436 PRK09135 pteridine reductase; 74.7 5 0.00011 38.7 5.0 33 278-310 4-37 (249)
437 TIGR01743 purR_Bsub pur operon 74.7 29 0.00062 36.0 10.6 32 279-310 193-228 (268)
438 PRK06249 2-dehydropantoate 2-r 74.7 3.3 7.2E-05 42.9 4.0 32 279-310 4-35 (313)
439 TIGR01850 argC N-acetyl-gamma- 74.6 9.7 0.00021 40.5 7.5 95 281-389 1-102 (346)
440 PF01118 Semialdhyde_dh: Semia 74.6 5.1 0.00011 35.7 4.6 32 282-313 1-34 (121)
441 PRK08589 short chain dehydroge 74.5 7.1 0.00015 39.0 6.2 32 278-309 4-36 (272)
442 PLN02214 cinnamoyl-CoA reducta 74.4 4.8 0.0001 42.1 5.1 33 278-310 8-41 (342)
443 PRK08017 oxidoreductase; Provi 74.2 4.9 0.00011 39.2 4.8 30 281-310 3-33 (256)
444 PRK05854 short chain dehydroge 74.1 7.6 0.00017 40.0 6.4 35 276-310 10-45 (313)
445 PRK10537 voltage-gated potassi 74.1 4.6 0.0001 43.9 5.0 101 280-403 240-350 (393)
446 PRK08277 D-mannonate oxidoredu 73.9 7.9 0.00017 38.5 6.3 33 277-309 7-40 (278)
447 PRK07097 gluconate 5-dehydroge 73.7 8.5 0.00018 38.1 6.4 33 277-309 7-40 (265)
448 PRK08213 gluconate 5-dehydroge 73.6 8.9 0.00019 37.7 6.5 33 278-310 10-43 (259)
449 PRK07478 short chain dehydroge 73.5 8.9 0.00019 37.5 6.5 33 278-310 4-37 (254)
450 PRK12823 benD 1,6-dihydroxycyc 73.5 5.8 0.00013 38.9 5.2 33 277-309 5-38 (260)
451 PRK08936 glucose-1-dehydrogena 73.5 6.3 0.00014 38.8 5.5 34 277-310 4-38 (261)
452 PLN02986 cinnamyl-alcohol dehy 73.5 5.5 0.00012 40.7 5.2 33 279-311 4-37 (322)
453 PLN00141 Tic62-NAD(P)-related 73.4 5.4 0.00012 39.4 5.0 33 278-310 15-48 (251)
454 PRK04308 murD UDP-N-acetylmura 73.4 5 0.00011 43.6 5.1 34 278-312 3-36 (445)
455 PRK06139 short chain dehydroge 73.4 7.1 0.00015 40.9 6.1 33 278-310 5-38 (330)
456 PRK06463 fabG 3-ketoacyl-(acyl 73.4 6.4 0.00014 38.6 5.4 33 278-310 5-38 (255)
457 KOG1207|consensus 73.3 9.7 0.00021 37.6 6.4 34 277-310 4-38 (245)
458 PRK12746 short chain dehydroge 73.3 6.3 0.00014 38.4 5.3 32 278-309 4-36 (254)
459 PRK06171 sorbitol-6-phosphate 73.2 6.1 0.00013 39.0 5.3 34 277-310 6-40 (266)
460 PRK06914 short chain dehydroge 73.2 5.9 0.00013 39.4 5.2 32 279-310 2-34 (280)
461 COG1062 AdhC Zn-dependent alco 73.1 5.8 0.00012 42.6 5.2 140 238-425 159-302 (366)
462 PRK06077 fabG 3-ketoacyl-(acyl 73.0 6.9 0.00015 38.0 5.5 34 278-311 4-38 (252)
463 TIGR03736 PRTRC_ThiF PRTRC sys 73.0 4.3 9.3E-05 41.4 4.2 50 279-330 10-62 (244)
464 PRK08618 ornithine cyclodeamin 72.9 31 0.00068 36.2 10.7 112 279-409 126-245 (325)
465 PRK08226 short chain dehydroge 72.9 5.9 0.00013 39.0 5.0 33 278-310 4-37 (263)
466 PLN02602 lactate dehydrogenase 72.8 5.2 0.00011 42.8 5.0 24 281-304 38-61 (350)
467 PRK05993 short chain dehydroge 72.8 7.1 0.00015 39.1 5.7 31 280-310 4-35 (277)
468 PF13738 Pyr_redox_3: Pyridine 72.3 5.1 0.00011 37.7 4.3 34 277-310 164-197 (203)
469 PRK07533 enoyl-(acyl carrier p 72.2 6.6 0.00014 39.0 5.3 33 277-309 7-42 (258)
470 cd05293 LDH_1 A subgroup of L- 72.2 6.7 0.00015 41.2 5.5 24 281-304 4-27 (312)
471 PRK10206 putative oxidoreducta 72.1 6.5 0.00014 41.5 5.4 32 281-312 2-36 (344)
472 PF01494 FAD_binding_3: FAD bi 72.0 5.2 0.00011 40.3 4.5 32 281-313 2-33 (356)
473 KOG2336|consensus 71.9 4.7 0.0001 42.2 4.1 39 270-308 69-111 (422)
474 PRK06200 2,3-dihydroxy-2,3-dih 71.9 9.2 0.0002 37.7 6.2 32 278-309 4-36 (263)
475 PRK05565 fabG 3-ketoacyl-(acyl 71.7 6.6 0.00014 37.8 5.0 32 278-309 3-35 (247)
476 PRK12769 putative oxidoreducta 71.6 5 0.00011 46.1 4.8 31 279-309 326-356 (654)
477 PRK07370 enoyl-(acyl carrier p 71.4 6.6 0.00014 39.1 5.0 32 278-309 4-38 (258)
478 PRK12827 short chain dehydroge 71.2 7.1 0.00015 37.6 5.1 33 278-310 4-37 (249)
479 PLN02253 xanthoxin dehydrogena 71.2 10 0.00022 37.8 6.3 33 277-309 15-48 (280)
480 PRK12809 putative oxidoreducta 71.2 11 0.00024 43.2 7.5 31 279-309 309-339 (639)
481 PRK12481 2-deoxy-D-gluconate 3 70.9 6.7 0.00014 38.7 4.9 32 278-309 6-38 (251)
482 PLN02586 probable cinnamyl alc 70.9 6.8 0.00015 41.2 5.3 32 279-310 183-214 (360)
483 cd01487 E1_ThiF_like E1_ThiF_l 70.8 5.5 0.00012 38.1 4.2 32 282-313 1-32 (174)
484 PRK05708 2-dehydropantoate 2-r 70.8 5.4 0.00012 41.4 4.4 103 281-398 3-117 (305)
485 PRK07454 short chain dehydroge 70.7 11 0.00023 36.6 6.2 32 279-310 5-37 (241)
486 PRK00683 murD UDP-N-acetylmura 70.7 6.3 0.00014 42.5 5.1 33 279-312 2-34 (418)
487 PRK12825 fabG 3-ketoacyl-(acyl 70.7 8.1 0.00017 37.0 5.3 35 278-312 4-39 (249)
488 COG0100 RpsK Ribosomal protein 70.6 24 0.00052 32.8 8.0 57 249-312 57-113 (129)
489 PRK08849 2-octaprenyl-3-methyl 70.5 5.5 0.00012 42.1 4.5 30 281-310 4-33 (384)
490 TIGR02440 FadJ fatty oxidation 70.4 9.9 0.00021 44.3 6.9 28 281-308 305-333 (699)
491 CHL00041 rps11 ribosomal prote 70.4 23 0.0005 32.1 7.8 65 245-316 48-112 (116)
492 PRK00421 murC UDP-N-acetylmura 70.1 6.4 0.00014 43.0 5.0 34 278-312 5-39 (461)
493 PRK07236 hypothetical protein; 70.0 6.1 0.00013 41.7 4.7 35 278-313 4-38 (386)
494 PRK08013 oxidoreductase; Provi 70.0 5.4 0.00012 42.5 4.3 31 281-312 4-34 (400)
495 PRK08278 short chain dehydroge 69.8 7.8 0.00017 38.8 5.2 33 278-310 4-37 (273)
496 TIGR03201 dearomat_had 6-hydro 69.7 9.5 0.00021 39.6 6.0 31 279-309 166-196 (349)
497 PRK06180 short chain dehydroge 69.7 11 0.00024 37.7 6.2 32 279-310 3-35 (277)
498 COG0059 IlvC Ketol-acid reduct 69.7 4.3 9.3E-05 42.9 3.3 54 278-334 16-73 (338)
499 PRK06753 hypothetical protein; 69.4 5.8 0.00013 41.4 4.4 30 281-311 1-30 (373)
500 PRK06198 short chain dehydroge 69.4 8.2 0.00018 37.8 5.2 31 278-308 4-36 (260)
No 1
>PRK14030 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=5.9e-125 Score=1001.04 Aligned_cols=420 Identities=27% Similarity=0.390 Sum_probs=393.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEE
Q psy1913 38 DKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCH 117 (535)
Q Consensus 38 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~ 117 (535)
...+|+||+++..+|++|+++++ +.++ ....+++++|++|+|+|+|+|||+||||++++|+|||||
T Consensus 14 ~~~e~eF~~~~~~~~~~~~~~l~--~~~~------------y~~~~~~~~l~~p~r~i~~~vp~~~d~G~~~~~~GyRvq 79 (445)
T PRK14030 14 HPGESEYLQAVKEVLLSVEDVYN--QHPE------------FEKAKIIERIVEPDRIFTFRVPWVDDKGEVQVNLGYRVQ 79 (445)
T ss_pred CcCChHHHHHHHHHHHHHHHHHc--cChh------------hhhhHHHHHhhcCcEEEEEEEEEEECCCcEEEEeeEEEE
Confidence 34579999999999999999997 2110 012348999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCC
Q psy1913 118 HCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPG 197 (535)
Q Consensus 118 H~~~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~ 197 (535)
||+++||+||||||||+++++|+++||+||||||||+|||||||||||.+||+.+|+.||||++|+|+++|.+ ||||+
T Consensus 80 hn~~lGP~kGGiR~~p~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~f~~~L~~--~iGp~ 157 (445)
T PRK14030 80 FNNAIGPYKGGIRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFSPRGKSDAEIMRFCQAFMLELWR--HIGPD 157 (445)
T ss_pred ecCcccCCCCcEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeeecCCCccCCHHHHHHHHHHHHHHHHH--hcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 99999
Q ss_pred CcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCC
Q psy1913 198 IDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPC 277 (535)
Q Consensus 198 ~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~ 277 (535)
+|||||||||++++|+||+|+|+++.|. .+++|||||+.+|||.||.+||||||++++++++ +.+|+ +
T Consensus 158 ~DIpApDvgt~~~~M~w~~d~y~~~~~~----~~g~vTGkp~~~gGs~gr~~ATg~Gv~~~~~~~~------~~~g~--~ 225 (445)
T PRK14030 158 TDVPAGDIGVGGREVGYMFGMYKKLTRE----FTGTLTGKGLEFGGSLIRPEATGFGALYFVHQML------ETKGI--D 225 (445)
T ss_pred CCccccccCCCHHHHHHHHHHHHhccCc----cccEEEccccccCCCCCCCCccHHHHHHHHHHHH------HHcCC--C
Confidence 9999999999999999999999998875 3799999999999999999999999999999665 45676 5
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHH---HHHHHHHcCCcc-----cCCCCcccC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKD---LHTYKITKGTIK-----GYPGTKSAP 349 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~---L~~~~~~~g~v~-----~~~~a~~i~ 349 (535)
|+|+||+||||||||+++|++|++.|+|||+|||++|+||||+| ||+++ |++++++++++. +||+++.++
T Consensus 226 l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~G--ld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~ 303 (445)
T PRK14030 226 IKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDG--ISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFA 303 (445)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCC--CCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcC
Confidence 89999999999999999999999999999999999999999999 99888 888999988876 788888888
Q ss_pred C-CCccccceEEeeccccccccccccccc---cceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhh
Q psy1913 350 T-DIMFDKVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLK 425 (535)
Q Consensus 350 ~-ell~~~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~q 425 (535)
+ ++|+++||||+|||++|+||.+||++| +||+|+||||+|+||+|+++|++|||+|+||+++||||||+|||||+|
T Consensus 304 ~~~~~~~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~iL~~rGI~~vPD~~aNAGGVivs~~E~~q 383 (445)
T PRK14030 304 GKKPWEQKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDKFIAAKQLFAPGKAVNAGGVATSGLEMSQ 383 (445)
T ss_pred CccceeccccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHCCCEEeCcceecCCCeeeehhhhhc
Confidence 8 999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1913 426 NISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEK 505 (535)
Q Consensus 426 n~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~ 505 (535)
|+++++| +++ +|+++|+++|.++|++|++.+++
T Consensus 384 n~~~~~w-------~~e----------------------------------------eV~~~L~~~m~~~~~~v~~~~~~ 416 (445)
T PRK14030 384 NAMHLSW-------SAE----------------------------------------EVDEKLHQIMSGIHEQCVKYGKE 416 (445)
T ss_pred cccccCc-------CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999766 664 29999999999999999999999
Q ss_pred cCCCCCHHHHHhHHHHHHHHHHHHHcCCC
Q psy1913 506 SDNKLDLRNAAYCSALFKIFKTYEEAGLE 534 (535)
Q Consensus 506 ~~~~~~lR~AAy~~ai~rv~~a~~~~G~~ 534 (535)
++..+|||+|||++|++||++||+.||+|
T Consensus 417 ~~~~~~lr~aA~~~a~~rva~a~~~rG~~ 445 (445)
T PRK14030 417 GDGYINYVKGANIAGFMKVAKAMLAQGVV 445 (445)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 85337999999999999999999999975
No 2
>PLN02477 glutamate dehydrogenase
Probab=100.00 E-value=1.5e-124 Score=993.26 Aligned_cols=407 Identities=38% Similarity=0.633 Sum_probs=391.3
Q ss_pred CHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEecCCC
Q psy1913 43 GFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHK 122 (535)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H~~~~ 122 (535)
++|+++..||++|+++++ + +++++++|++|+|+++|+|||+||||++++|+|||||||+++
T Consensus 2 ~~~~~~~~~~~~a~~~~~--~-----------------~~~~~~~l~~p~r~~~v~~p~~~d~g~~~~~~gyRvqh~~~~ 62 (410)
T PLN02477 2 NALAATNRNFREAARLLG--L-----------------DSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNAR 62 (410)
T ss_pred CHHHHHHHHHHHHHHHcC--C-----------------CHHHHHHHhcCceEEEEEEEEEECCCcEEEeeeeEeeecCcc
Confidence 689999999999999998 4 578899999999999999999999999999999999999999
Q ss_pred CCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCCCcccC
Q psy1913 123 SPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPA 202 (535)
Q Consensus 123 GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~dipa 202 (535)
||+||||||||++|++||++||+||||||||++||||||||||++||+.+|..|+|+++|+|+++|.+ +|||.+||||
T Consensus 63 GP~kGGiR~~p~v~~~ev~~La~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~e~e~l~r~f~~~l~~--~iG~~~Dipa 140 (410)
T PLN02477 63 GPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCDPRDLSESELERLTRVFTQKIHD--LIGIHTDVPA 140 (410)
T ss_pred CCCCCCeeecCCCCHHHHHHHHHHHHHHHHhcCCCCcCceeeeccCCccCCHHHHHHHHHHHHHHHHH--hcCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999986 9999999999
Q ss_pred CCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcE
Q psy1913 203 PDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKT 282 (535)
Q Consensus 203 pDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~ 282 (535)
|||||++++|+||+|+|+++.|++ +++|||||+.+|||.||.++|||||+++++++++ .+|. +++|+|
T Consensus 141 pDvgt~~~~M~w~~d~y~~~~g~~----~~~vtGkp~~~gGs~~r~~aTg~Gv~~~~~~~~~------~~g~--~l~g~~ 208 (410)
T PLN02477 141 PDMGTNAQTMAWILDEYSKFHGFS----PAVVTGKPIDLGGSLGREAATGRGVVFATEALLA------EHGK--SIAGQT 208 (410)
T ss_pred CCCCCCHHHHHHHHHHHHHhhCCC----CceEeCCCcccCCCCCCCccchHHHHHHHHHHHH------HcCC--CccCCE
Confidence 999999999999999999999863 8999999999999999999999999999996654 5675 589999
Q ss_pred EEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceEEe
Q psy1913 283 YIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDILV 361 (535)
Q Consensus 283 VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILi 361 (535)
|+||||||||+++|++|++.|+|||||||++|+||||+| ||+++|++++++++++.+|++++.+++ ++|..+||||+
T Consensus 209 VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~G--LD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~~~Dvli 286 (410)
T PLN02477 209 FVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENG--LDIPALRKHVAEGGGLKGFPGGDPIDPDDILVEPCDVLI 286 (410)
T ss_pred EEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCC--CCHHHHHHHHHhcCchhccccceEecCccceeccccEEe
Confidence 999999999999999999999999999999999999999 999999999999999999999998988 99999999999
Q ss_pred eccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccccccccccccch
Q psy1913 362 PAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDK 441 (535)
Q Consensus 362 PaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~ 441 (535)
|||++++||++||++++||+|+||||+|+||+|+++|++|||+|+||+++||||||+|||||+||+++++| ++
T Consensus 287 P~Al~~~I~~~na~~i~ak~I~egAN~p~t~ea~~~L~~rGI~~~PD~~aNaGGVivs~~E~~qn~~~~~w-------~~ 359 (410)
T PLN02477 287 PAALGGVINKENAADVKAKFIVEAANHPTDPEADEILRKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMW-------EE 359 (410)
T ss_pred eccccccCCHhHHHHcCCcEEEeCCCCCCCHHHHHHHHHCCcEEEChHHhCCCCeeeeHHHhhhccccCCC-------CH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998755 66
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Q psy1913 442 EISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSAL 521 (535)
Q Consensus 442 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~ai 521 (535)
+ +|.++|+++|.++|++|++.+++++ +++|+|||++|+
T Consensus 360 ~----------------------------------------~v~~~l~~~m~~~~~~v~~~a~~~~--~~~r~aA~~~a~ 397 (410)
T PLN02477 360 E----------------------------------------KVNRELDRYMTDAFKALKEMCKTHN--CSLRMGAFTLGV 397 (410)
T ss_pred H----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence 4 2889999999999999999999996 799999999999
Q ss_pred HHHHHHHHHcCC
Q psy1913 522 FKIFKTYEEAGL 533 (535)
Q Consensus 522 ~rv~~a~~~~G~ 533 (535)
+||+++|+.||+
T Consensus 398 ~rv~~a~~~rG~ 409 (410)
T PLN02477 398 NRVARATVLRGW 409 (410)
T ss_pred HHHHHHHHhhCC
Confidence 999999999995
No 3
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=6e-125 Score=982.70 Aligned_cols=409 Identities=37% Similarity=0.642 Sum_probs=390.7
Q ss_pred CHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEecCCC
Q psy1913 43 GFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHK 122 (535)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H~~~~ 122 (535)
++|+++..++.+|++.+. + +++++++|+.|+|.++|++||+||+|++++|+|||+|||+++
T Consensus 2 ~~~~~a~~~~~~~~~~~~--~-----------------~~~~~e~l~~p~r~i~~~i~v~~d~g~~~~~~g~rvqhn~a~ 62 (411)
T COG0334 2 NEFEQAVKELEKALEPLY--L-----------------DEGVLERLKEPERVIQVRIPVRMDDGSVKVFRGYRVQHNSAL 62 (411)
T ss_pred cHHHHHHHHHHHhhhhcc--C-----------------chhHHHHhcCceeEEEEEEEEEEcCCcEeeeEEEEEEecCCc
Confidence 578999999999988865 2 468899999999999999999999999999999999999999
Q ss_pred CCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCCCcccC
Q psy1913 123 SPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPA 202 (535)
Q Consensus 123 GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~dipa 202 (535)
||+||||||||+||++||++||+||||||||++||||||||||++||+.+|+.|+||++|+|+++|.+ +|||.+||||
T Consensus 63 GP~kGGiRfhP~v~~~ev~~Ls~~MT~Knal~~Lp~GGGKGgi~~DPk~~S~~E~erl~raf~~~i~~--~iGp~~dIpA 140 (411)
T COG0334 63 GPYKGGVRFHPYVTLEEVKALSFWMTLKNALAGLPYGGGKGGIIVDPKGLSDGELERLSRAFGRAIYR--LIGPDTDIPA 140 (411)
T ss_pred CCccCceecCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCceeeeCCcccCCHHHHHHHHHHHHHHHHH--hcCCCcEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 8999999999
Q ss_pred CCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcE
Q psy1913 203 PDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKT 282 (535)
Q Consensus 203 pDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~ 282 (535)
|||||++|+|+||+|+|+++.|.. .+|++||||+++|||.+|.+||||||++++++ +++.+|. +|+|+|
T Consensus 141 pDvgt~~~~m~wm~dey~~i~g~~---~~gv~TGKp~~~GGS~~r~~aTg~Gv~~~~~~------a~~~~g~--~l~G~r 209 (411)
T COG0334 141 PDVGTNPQDMAWMMDEYSKIVGNS---APGVFTGKPLELGGSLGRSEATGYGVFYAIRE------ALKALGD--DLEGAR 209 (411)
T ss_pred cccCCCHHHHHHHHHhhhhhcCCC---CcceecCCcccccCCCCCCcccceehHHHHHH------HHHHcCC--CcCCCE
Confidence 999999999999999999999875 68999999999999999999999999999994 4456775 389999
Q ss_pred EEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceEEe
Q psy1913 283 YIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDILV 361 (535)
Q Consensus 283 VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILi 361 (535)
|+||||||||+++|++|++.|+|||++||++|+||||+| ||+++|.+.+++.+++..|++++.+++ ++|+++||||+
T Consensus 210 VaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~G--ld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~~cDIl~ 287 (411)
T COG0334 210 VAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDG--LDVEALLELKERRGSVAEYAGAEYITNEELLEVDCDILI 287 (411)
T ss_pred EEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCC--CCHHHHHHHhhhhhhHHhhcCceEccccccccccCcEEc
Confidence 999999999999999999999999999999999999999 999999988888899999999999999 99999999999
Q ss_pred eccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccccccccccccch
Q psy1913 362 PAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDK 441 (535)
Q Consensus 362 PaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~ 441 (535)
|||++|+||.+||++|+||+|+||||+|+|+||+++|.+|||+|+||+++||||||+|||||+||+++++| ++
T Consensus 288 PcA~~n~I~~~na~~l~ak~V~EgAN~P~t~eA~~i~~erGIl~~PD~laNAGGV~vS~~E~~qn~~~~~w-------t~ 360 (411)
T COG0334 288 PCALENVITEDNADQLKAKIVVEGANGPTTPEADEILLERGILVVPDILANAGGVIVSYLEWVQNAQGLYW-------TE 360 (411)
T ss_pred ccccccccchhhHHHhhhcEEEeccCCCCCHHHHHHHHHCCCEEcChhhccCcCeeeehHHHHhhcccCcc-------CH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998655 77
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Q psy1913 442 EISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSAL 521 (535)
Q Consensus 442 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~ai 521 (535)
+ +|.++|+.+|.++|+.+++.+++++ +|+|+|||++|+
T Consensus 361 e----------------------------------------ev~~kl~~im~~~~~~~~~~~~~~~--~~~r~aA~~~a~ 398 (411)
T COG0334 361 E----------------------------------------EVDEKLERIMVNAFEAVYQAAKEYG--VDLRTAAYILAF 398 (411)
T ss_pred H----------------------------------------HHHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHH
Confidence 5 3999999999999999999999995 599999999999
Q ss_pred HHHHHHHHHcCCC
Q psy1913 522 FKIFKTYEEAGLE 534 (535)
Q Consensus 522 ~rv~~a~~~~G~~ 534 (535)
+||++||+.||++
T Consensus 399 ~Rva~Am~~~G~~ 411 (411)
T COG0334 399 ERVADAMKARGWY 411 (411)
T ss_pred HHHHHHHHhcCCC
Confidence 9999999999986
No 4
>PRK09414 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-121 Score=977.67 Aligned_cols=419 Identities=28% Similarity=0.403 Sum_probs=392.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEe
Q psy1913 39 KENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHH 118 (535)
Q Consensus 39 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H 118 (535)
..+|+||+++..+|++|+++++ +.+ + ...++++++|++|+|+|+|+|||+||||++++|+|||+||
T Consensus 19 ~~~~~~~~~~~~~~~~a~~~l~--~~~---------~---~~~~~~~~~l~~p~r~i~v~~pv~~d~g~~~~~~gyRv~h 84 (445)
T PRK09414 19 PGQPEFHQAVREVLESLWPVLE--KNP---------E---YAEAGILERLVEPERVIIFRVPWVDDKGQVQVNRGFRVQF 84 (445)
T ss_pred cCCchHHHHHHHHHHHHHHHhc--cCh---------h---hhhhhHHHHhcCCceEEEEEEEEEECCCcEEEEeeeEEEe
Confidence 3678999999999999999997 311 0 1134599999999999999999999999999999999999
Q ss_pred cCCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCCC
Q psy1913 119 CTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGI 198 (535)
Q Consensus 119 ~~~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~ 198 (535)
|+++||+||||||||+++.+|+.+||+||||||||+|||||||||||.+||+.+|+.||||++|+|+++|.+ +|||..
T Consensus 85 ~~~~GPakGG~R~~p~v~~~ev~aLA~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~~~~~l~~--~iG~~~ 162 (445)
T PRK09414 85 NSAIGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLPIGGGKGGSDFDPKGKSDAEIMRFCQSFMTELYR--HIGPDT 162 (445)
T ss_pred cCCCcCCCCceeecCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeeeecCCccCCHHHHHHHHHHHHHHHHH--hcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 899999
Q ss_pred cccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCC
Q psy1913 199 DVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCM 278 (535)
Q Consensus 199 dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l 278 (535)
|||||||||++++|+||+|+|+++.|+. .|++||||+.+|||.+|.++|||||+++++++++ .+|. ++
T Consensus 163 DipapDvgt~~~~M~~~~d~y~~~~~~~----~g~vtGkp~~~gGs~gr~~aTg~Gv~~~~~~~~~------~~~~--~l 230 (445)
T PRK09414 163 DVPAGDIGVGGREIGYLFGQYKRLTNRF----EGVLTGKGLSFGGSLIRTEATGYGLVYFAEEMLK------ARGD--SF 230 (445)
T ss_pred CcCccccCCCHHHHHHHHHHHHhhcCcc----eEEEecCCcccCCCCCCCCcccHHHHHHHHHHHH------hcCC--Cc
Confidence 9999999999999999999999998864 3999999999999999999999999999996664 4564 58
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHc-CCcccCC---CCcccCC-CCc
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK-GTIKGYP---GTKSAPT-DIM 353 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~-g~v~~~~---~a~~i~~-ell 353 (535)
+|+||+||||||||+++|++|++.|+|||+|||++|+||||+| ||+++|+++++++ +++.+|+ +++.+++ ++|
T Consensus 231 ~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~G--LD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~ 308 (445)
T PRK09414 231 EGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEG--IDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPW 308 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCC--CCHHHHHHHHHhcCCchhhhhhhcCCeecCCcccc
Confidence 9999999999999999999999999999999999999999999 9999999999887 5888887 5567777 899
Q ss_pred cccceEEeeccccccccccccccc---cceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccc
Q psy1913 354 FDKVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHS 430 (535)
Q Consensus 354 ~~~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~ 430 (535)
+++||||||||++|+||++||.++ +||+|+||||+|+||+|+++|++|||+|+||+++||||||+|||||+||++++
T Consensus 309 ~~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L~~rGI~~vPD~laNaGGVivs~~E~~qn~~~~ 388 (445)
T PRK09414 309 SVPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVFLEAGVLFAPGKAANAGGVATSGLEMSQNASRL 388 (445)
T ss_pred ccCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHHHHCCcEEECchhhcCCCeeeeehhhccccccc
Confidence 999999999999999999999999 89999999999999999999999999999999999999999999999999987
Q ss_pred cccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy1913 431 SLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKL 510 (535)
Q Consensus 431 ~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~ 510 (535)
+| +++ +|+++|+++|.++|+++++++++++..+
T Consensus 389 ~w-------~~~----------------------------------------~V~~~l~~~m~~~~~~~~~~~~~~~~~~ 421 (445)
T PRK09414 389 SW-------TFE----------------------------------------EVDARLHDIMKNIHHACVETAEEYGKPG 421 (445)
T ss_pred ee-------cHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 55 653 2899999999999999999999997558
Q ss_pred CHHHHHhHHHHHHHHHHHHHcCCC
Q psy1913 511 DLRNAAYCSALFKIFKTYEEAGLE 534 (535)
Q Consensus 511 ~lR~AAy~~ai~rv~~a~~~~G~~ 534 (535)
+||+|||++||+||++||+.||+|
T Consensus 422 ~~r~aA~~~a~~rv~~a~~~rG~~ 445 (445)
T PRK09414 422 NYVAGANIAGFVKVADAMLAQGVI 445 (445)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999987
No 5
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=100.00 E-value=1e-118 Score=952.41 Aligned_cols=417 Identities=28% Similarity=0.404 Sum_probs=385.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEe
Q psy1913 39 KENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHH 118 (535)
Q Consensus 39 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H 118 (535)
..+|.|++.+...++.-..++ ++.+++.+++++|++|+|+|+|++||.||+|++++|+||||||
T Consensus 26 ~~~~ef~qa~~e~~~~~~~~~----------------~~~~~y~~i~e~l~~Per~i~~~vp~~~D~G~v~v~~GyRVqh 89 (454)
T PTZ00079 26 PNQPEFLQAFHEVMTSLKPLF----------------QKNPKYLGVLERLVEPERVIQFRVPWVDDKGEQRVNRGFRVQY 89 (454)
T ss_pred CCChHHHHHHHHHHHHHHHHH----------------HhChhHHHHHHHhccCceEEEEEEEEEECCCCEEEEeeEEEEE
Confidence 446778888877666544443 3345566899999999999999999999999999999999999
Q ss_pred cCCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCCC
Q psy1913 119 CTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGI 198 (535)
Q Consensus 119 ~~~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~ 198 (535)
|+++||+||||||||+++++|+++||++|||||||++||||||||||.+||+.+|+.|+||+||+|+.+|.+ +|||++
T Consensus 90 n~alGP~kGGlRfhp~v~~~~vk~La~~mt~KnAl~gLP~GGgKGGi~~dPk~~s~~El~r~~r~f~~eL~~--~IGp~~ 167 (454)
T PTZ00079 90 NSALGPYKGGLRFHPSVNLSILKFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGKSDNEVMRFCQSFMTELYR--HIGPDT 167 (454)
T ss_pred cCCCCCCCCCEEeeCCCCHHHHHHHHHHHHHHHHhcCCCCCCcceeeecCCCCCCHHHHHHHHHHHHHHHHH--hcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 899999
Q ss_pred cccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCC
Q psy1913 199 DVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCM 278 (535)
Q Consensus 199 dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l 278 (535)
||||||+||++++|+||+++|+++.|.. ++++||||+.+|||.+|.+||||||+++++++++ .+|. +|
T Consensus 168 DvpA~DvGt~~rem~~~~~~y~~~~~~~----~gv~TGK~~~~GGs~~r~eATG~Gv~~~~~~~l~------~~~~--~l 235 (454)
T PTZ00079 168 DVPAGDIGVGGREIGYLFGQYKKLRNNF----EGTLTGKNVKWGGSNIRPEATGYGLVYFVLEVLK------KLND--SL 235 (454)
T ss_pred ccchhhcCCCHHHHHHHHHHHHHHhCCC----CceeCCCCCCCCCCCCCCcccHHHHHHHHHHHHH------HcCC--Cc
Confidence 9999999999999999999999998753 7999999999999999999999999999996665 4554 58
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHH---HHHHHHc-CCcccCC----CCcccCC
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDL---HTYKITK-GTIKGYP----GTKSAPT 350 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L---~~~~~~~-g~v~~~~----~a~~i~~ 350 (535)
+|+||+||||||||+++|++|++.|+|||+|||++|+||||+| ||+++| .++++.+ +++..|+ +++.+++
T Consensus 236 ~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~G--ld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~ 313 (454)
T PTZ00079 236 EGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNG--FTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPG 313 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCC--CCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCC
Confidence 9999999999999999999999999999999999999999999 999888 6667654 7777775 5778888
Q ss_pred -CCccccceEEeeccccccccccccccc---cceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhc
Q psy1913 351 -DIMFDKVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKN 426 (535)
Q Consensus 351 -ell~~~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn 426 (535)
++|+++||||+|||++|+||.+||++| +||+|+||||+|+|++|+++|++|||+|+||+++|||||++|||||+||
T Consensus 314 ~~~~~~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~~L~~~GI~~~PD~~aNAGGV~vS~~E~~Qn 393 (454)
T PTZ00079 314 KKPWEVPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATHLFKKNGVIFCPGKAANAGGVAISGLEMSQN 393 (454)
T ss_pred cCcccCCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHCCcEEEChhhhcCCCeeeehHHhhhh
Confidence 999999999999999999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1913 427 ISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKS 506 (535)
Q Consensus 427 ~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~ 506 (535)
+++++| ++| +|+++|+++|.++|+++++++++|
T Consensus 394 ~~~~~W-------~~e----------------------------------------eV~~~L~~~M~~~~~~~~~~a~~~ 426 (454)
T PTZ00079 394 AARLQW-------TAE----------------------------------------EVDEKLREIMKSIFEACVKYAEKY 426 (454)
T ss_pred hcccCC-------CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998755 664 399999999999999999999999
Q ss_pred CCCCCHHHHHhHHHHHHHHHHHHHcCCC
Q psy1913 507 DNKLDLRNAAYCSALFKIFKTYEEAGLE 534 (535)
Q Consensus 507 ~~~~~lR~AAy~~ai~rv~~a~~~~G~~ 534 (535)
+.++|||+|||++||.||++||..||++
T Consensus 427 ~~~~~~r~~A~i~~~~rva~Am~~~G~~ 454 (454)
T PTZ00079 427 GGKSDLVAGANIAGFLKVADSMIEQGCV 454 (454)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 7668999999999999999999999975
No 6
>PRK14031 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=8e-119 Score=954.70 Aligned_cols=417 Identities=28% Similarity=0.389 Sum_probs=386.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhh--hhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEE
Q psy1913 39 KENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRR--NGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRC 116 (535)
Q Consensus 39 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv 116 (535)
..+|.|++++..+++.-..+++ +.+++ .+++++|++|+|+++|+|||+||+|++++|+|||+
T Consensus 15 ~~~~e~~q~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~gyRv 78 (444)
T PRK14031 15 PNEPEYHQAVEEVLSTIEEEYN----------------KHPEFDKANLIERLCIPDRVYQFRVTWVDDKGNVQTNMGYRV 78 (444)
T ss_pred cCChHHHHHHHHHHHHHHHHHH----------------hChhhhhhhHHHHhhcCceEEEEEEEEEECCCCEEEEeeEEE
Confidence 3468899999988887666654 22233 56899999999999999999999999999999999
Q ss_pred EecCCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCC
Q psy1913 117 HHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGP 196 (535)
Q Consensus 117 ~H~~~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp 196 (535)
|||+++||+||||||||+++++|+++||+||||||||++||||||||||.+||+.+|+.||||++|+|+.+|.+ +|||
T Consensus 79 qhn~~lGP~kGGiR~~p~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggi~~dP~~~s~~Eler~~r~f~~~L~~--~iGp 156 (444)
T PRK14031 79 QHNNAIGPYKGGIRFHASVNLGILKFLAFEQTFKNSLTTLPMGGGKGGSDFSPRGKSNAEVMRFCQAFMLELWR--HIGP 156 (444)
T ss_pred EecCCCcCCCCCeeecCCCCHHHHHHHHHHHHHHHHHcCCCCCCceeeeeCCCCCCCHHHHHHHHHHHHHHHHh--ccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996 9999
Q ss_pred CCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCC
Q psy1913 197 GIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEP 276 (535)
Q Consensus 197 ~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~ 276 (535)
++|||||||||++++|+||+|+|++..++ .+|++||||+.+|||.+|.+||||||+++++++++ .+|+
T Consensus 157 ~~dipApDvgt~~~~M~~i~d~y~~~~~~----~~g~~tgkp~~~GGs~~r~~aTg~Gv~~~~~~~~~------~~g~-- 224 (444)
T PRK14031 157 ETDVPAGDIGVGGREVGFMFGMYKKLSHE----FTGTFTGKGREFGGSLIRPEATGYGNIYFLMEMLK------TKGT-- 224 (444)
T ss_pred CCccCccccCCCHHHHHHHHHHHHhhcCC----cceEECCCccccCCCCCCCcccHHHHHHHHHHHHH------hcCC--
Confidence 99999999999999999999999998875 48999999999999999999999999999996654 5676
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHH---HHHHH-cCCcccCC---CCcccC
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH---TYKIT-KGTIKGYP---GTKSAP 349 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~---~~~~~-~g~v~~~~---~a~~i~ 349 (535)
+|+|+||+||||||||+++|++|++.|++||+|||++|+||||+| ||+++|. +++.. ++++.+|+ +++.++
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~G--ld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~ 302 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDG--IDREKLDYIMELKNLYRGRIREYAEKYGCKYVE 302 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCC--CCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence 589999999999999999999999999999999999999999999 9999986 55555 57788876 567777
Q ss_pred C-CCccccceEEeeccccccccccccccccce---EEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhh
Q psy1913 350 T-DIMFDKVDILVPAAIEKVIRKSNADKVQAK---IIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLK 425 (535)
Q Consensus 350 ~-ell~~~~DILiPaA~~~~It~~na~~i~Ak---iIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~q 425 (535)
+ ++|+.+||||+|||++|+||.+||++|+|+ +|+||||+|+||+|+++|++|||+++||+++||||||+|||||+|
T Consensus 303 ~d~~~~~~cDIliPaAl~n~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~~L~~rgI~~~PD~~aNAGGVivs~~E~~q 382 (444)
T PRK14031 303 GARPWGEKGDIALPSATQNELNGDDARQLVANGVIAVSEGANMPSTPEAIKVFQDAKILYAPGKAANAGGVSVSGLEMTQ 382 (444)
T ss_pred CcccccCCCcEEeecccccccCHHHHHHHHhcCCeEEECCCCCCCCHHHHHHHHHCCcEEeChhhccCCCeeeehhhhhc
Confidence 7 899999999999999999999999999986 999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1913 426 NISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEK 505 (535)
Q Consensus 426 n~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~ 505 (535)
|+++++| +++ +|+++|+++|.++|++|++++++
T Consensus 383 n~~~~~W-------~~e----------------------------------------eV~~~L~~~m~~~~~~v~~~~~~ 415 (444)
T PRK14031 383 NSIKLSW-------SSE----------------------------------------EVDEKLKSIMKNIHEACVQYGTE 415 (444)
T ss_pred cccccCC-------CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 9998755 664 39999999999999999999999
Q ss_pred cCCCCCHHHHHhHHHHHHHHHHHHHcCCC
Q psy1913 506 SDNKLDLRNAAYCSALFKIFKTYEEAGLE 534 (535)
Q Consensus 506 ~~~~~~lR~AAy~~ai~rv~~a~~~~G~~ 534 (535)
++.++|||+|||++||+||++||+.||+|
T Consensus 416 ~~~~~~~r~aA~~~a~~rva~a~~~~G~~ 444 (444)
T PRK14031 416 ADGYVNYVKGANVAGFMKVAKAMMAQGIV 444 (444)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 85458999999999999999999999975
No 7
>KOG2250|consensus
Probab=100.00 E-value=5.6e-118 Score=935.48 Aligned_cols=491 Identities=41% Similarity=0.667 Sum_probs=464.2
Q ss_pred CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHhccchhhhhhhh-hcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcC
Q psy1913 26 GHKIPERLKDVPDKENPGFFESVEYYFHRAVQNLIPEFDVSIRA-RKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRD 104 (535)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d 104 (535)
-|++++..+++ +++|.|+++|+.++..++....+.+.+++.. +.+++++|.++...|+.+|..|+|.++|++|+.+|
T Consensus 10 ~~~~~~~~k~~--~~~p~~~~~v~~~~~~~~~~~~~~~~e~v~~~e~~~~fek~~~~~~Il~~l~p~~~~i~~~~p~~~d 87 (514)
T KOG2250|consen 10 AHQYHNSTKDM--ADSPTFLKMVESMYAPAAIEFQQALAEDVLSLELSSKFEKSPLYTAILFRLDPPERVIKFRVPIPRD 87 (514)
T ss_pred HHHhhhccccc--ccChHHHHHHHhhccccchhhhhhhHHHHhcchhhhhhhhhhHhhhhhhhcCccceeEEEEeceecC
Confidence 46777788888 8999999999999999998888888777776 68899999999999999999999999999999999
Q ss_pred CCceEEeeeeEEEecCCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHH
Q psy1913 105 SGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKF 184 (535)
Q Consensus 105 ~G~~~~~~gyRv~H~~~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f 184 (535)
+|..+++.|||+||+.+|||+||||||||+|++|++++||+.||||||+++||||||||||.+||+.+|..|+||+||+|
T Consensus 88 ~G~~~V~~gfRvqh~~argP~KGGIR~hpsvn~d~~k~La~~~t~K~A~tdiP~GGaKGGi~~dPk~~s~nEi~r~~~~f 167 (514)
T KOG2250|consen 88 DGEFEVINGFRVQHNRARGPAKGGIRYHPSVNLDIVKALAFLMTYKNALTDIPYGGAKGGILIDPKGKSDNEIERITRRF 167 (514)
T ss_pred CceEEEeechhhhhhhccCcccCceEeCCcCCHHHHHHHHHHHHHHhhccCCCCCCCcCccccCccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCccCCCCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHh
Q psy1913 185 ALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVN 264 (535)
Q Consensus 185 ~~~L~~~~~iGp~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~ 264 (535)
+++|.+ +|||++|+|||||||+++||.||+++|++..|+ +++|+||||+.+|||++|.+||||||+++++.+++
T Consensus 168 ~~el~~--~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~----~~a~vTGK~i~~GGs~~R~~ATG~GV~~y~e~~~~ 241 (514)
T KOG2250|consen 168 TDELID--IIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGH----WKAVVTGKPISLGGSHGRYEATGRGVVYYVEAILN 241 (514)
T ss_pred HHHHHH--HcCCCCCCCccccccCcchhhhhHHHHHHhhcc----cceeeeCCCCccCCccCcccccchhHHHHHHHHHH
Confidence 999997 999999999999999999999999999999986 68999999999999999999999999999998887
Q ss_pred cHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCC
Q psy1913 265 NEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPG 344 (535)
Q Consensus 265 ~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~ 344 (535)
+ +++..+++|+||+||||||||++++++|++.|++||+|+|++|+||||+| ||+.+|.+++++++++.+|++
T Consensus 242 ~------~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~l~np~G--id~~eL~~~~~~k~~i~~f~~ 313 (514)
T KOG2250|consen 242 D------ANGKKGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGVLINPDG--IDIEELLDLADEKKTIKSFDG 313 (514)
T ss_pred h------ccCCCCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCceeEECCCC--CCHHHHHHHHHhhcccccccc
Confidence 5 34456799999999999999999999999999999999999999999999 999999999999999999998
Q ss_pred CcccCC--------CCccccceEEeeccccccccccccccccce---EEEecCCCCCCHHHHHHHHhCCceeeccccccc
Q psy1913 345 TKSAPT--------DIMFDKVDILVPAAIEKVIRKSNADKVQAK---IIVEAANGPLTPAAHAMLLKKNVLIIPDIFANA 413 (535)
Q Consensus 345 a~~i~~--------ell~~~~DILiPaA~~~~It~~na~~i~Ak---iIvEgAN~p~T~eA~~iL~~rGI~viPD~laNa 413 (535)
++...+ .+|..+||||+|||.+|+||.+||..|+|+ +||||||+|+||||+++|+++||+++||+.||+
T Consensus 314 ~~~~~~~~~~~~~~~~~v~~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ptTpeA~~vlek~gv~i~Pd~~aNa 393 (514)
T KOG2250|consen 314 AKLSYEGYIAGLPPWTLVEKCDILVPCATQNEITGENAKALVAKGCKYIVEGANMPTTPEADEVLEKAGVLIIPDIYANA 393 (514)
T ss_pred ccccCccccccCcchhhHhhCcEEeecCccCcccHhhHHHHHhcCCcEEEecCCCCCChhHHHHHHhCCeEEechhhccC
Confidence 875432 567889999999999999999999999876 999999999999999999999999999999999
Q ss_pred cCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHH
Q psy1913 414 GGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQ 493 (535)
Q Consensus 414 GGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~ 493 (535)
|||+||||||+||+||++.|+|++.|+++.+...|..|.+.+.+.+++ ....+...+.+.++++++.|+|+..|...|.
T Consensus 394 GGVtvS~~E~l~nl~~~s~g~~~~~~~~e~v~~~L~~v~e~~~~~~~~-~~l~~~~~~~~~~~~~~~~~lv~gal~~~~~ 472 (514)
T KOG2250|consen 394 GGVTVSYFEWLQNLNHVSYGKLTFKWTEEKVDSLLASVQENLSRKQGK-ANLEPAAEFKDRIQGTSEKDLVHGALIATFN 472 (514)
T ss_pred CCeeeeHHHHHHhcccccccceeEEeehhhHHHHHHHHHHHHHHhccC-cccchHHHhhhhhcCCCchHHhhhhHHHHHH
Confidence 999999999999999999999999999999999999999888776554 3456778999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHHHHHHHcCCC
Q psy1913 494 RAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGLE 534 (535)
Q Consensus 494 ~a~~~v~~~a~~~~~~~~lR~AAy~~ai~rv~~a~~~~G~~ 534 (535)
+.-+.+.+....++. +|||+|||..+|+||...|...|+.
T Consensus 473 kva~ai~~~g~~~~~-ldlR~a~~~~~~ekiy~~~~~s~~~ 512 (514)
T KOG2250|consen 473 KVARAITDQGDVWNL-LDLRTAAYVNAIEKIYLVYNESGYT 512 (514)
T ss_pred HHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999987 9999999999999999999998863
No 8
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=100.00 E-value=1.7e-79 Score=693.69 Aligned_cols=398 Identities=21% Similarity=0.240 Sum_probs=346.3
Q ss_pred hhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEecCCCCCCCCCeeeecC-----------CCHHHHHHHHHHh
Q psy1913 79 LRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALD-----------VNPDEVKALAALM 147 (535)
Q Consensus 79 ~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H~~~~GPakGGiR~~p~-----------vt~dEv~aLA~~M 147 (535)
+.++.+++.|..|++.+.|.||+ | ..|+|||++|+.. ++|||||||. +++|||.+||+||
T Consensus 460 rldp~~l~~l~~P~~p~~v~fv~----G--~~f~G~hvR~~di---ARGGiR~~~s~~~edy~tn~~~~~dEv~~LA~tq 530 (1002)
T PTZ00324 460 RLDPSFLSELEYPRVPYGVFLVA----G--AQFRGFHIRFTDI---ARGGVRMIQSFKEQAYRRNKRSVFDENYNLASTQ 530 (1002)
T ss_pred eCCHHHHhhcCCCCceEEEEEEE----C--CcEEEEEEecCCc---ccceeEEecCcchhhhhhcccCcHHHHHHHHHHH
Confidence 45788899999999999999999 5 8999999999998 9999999998 8899999999999
Q ss_pred hhhhccccCCCCcceEEEecCCCCCCH---HHHHHHHHHHHHHHhccCccCCCCcc-----------cCCCCCCChhhHH
Q psy1913 148 TYKNSCSNVPFGGAKGGIRIDPSKYNN---RELERITRKFALELIKKNYVGPGIDV-----------PAPDYNTSAREMS 213 (535)
Q Consensus 148 T~K~Al~~lP~GGaKGgI~~dP~~~s~---~Eler~~r~f~~~L~~~~~iGp~~di-----------papDvgT~~~~Ma 213 (535)
||||| +||+|||||||.+||+.++. .|+++++|+|+++|.+ +|||+.|| ||||+||+++.|+
T Consensus 531 t~KNa--dIP~GGaKGgi~vdp~~~~~~~~~e~er~~r~yi~aLlD--li~p~~dIVd~~~~de~l~~aPD~ntta~~md 606 (1002)
T PTZ00324 531 LLKNK--DIPEGGSKGTILLSSRYLNKFAQVRCQHAFLQYIDALLD--VMLPGEKVVDHLKQEEIIFLGPDEHTTGTLMD 606 (1002)
T ss_pred HHhcC--CCCCCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHH--hcCCCcccccccCCccccccCCCCCCCHHHHH
Confidence 99999 99999999999999999887 8999999999999997 89999998 9999999999999
Q ss_pred HHHHHHhhHhCCCccCCCceEecccCcCCCCCCCC-CchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEc--ccc
Q psy1913 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRE-SATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQG--FGN 290 (535)
Q Consensus 214 wi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~-~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQG--fGn 290 (535)
|| ++|++.+|+. .+++++||||+.+||+.++. ++||+||+.+++ ++++++|++ .++.||++|| ||+
T Consensus 607 wa-~~~s~~rG~~--~~~af~TGKp~~lGG~~hk~yG~T~rGv~~~v~------~~~~~lgid--~~~~Tv~~~Ggp~GD 675 (1002)
T PTZ00324 607 WA-ALHAKKRGYP--FWKSFTTGKSPSMGGIPHDTYGMTTRSVRAYVT------GILEKLGLN--EEEVTKFQTGGPDGD 675 (1002)
T ss_pred HH-HHHHHHcCCC--CCCCEEeCCCcccCCcCCCcCcccchhHHHHHH------HHHHHcCCC--ccCCEEEEECCCCch
Confidence 99 8999999975 45899999999999999998 999999999999 556678985 5899999999 999
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCC---------------------CCccc-
Q psy1913 291 VGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYP---------------------GTKSA- 348 (535)
Q Consensus 291 VG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~---------------------~a~~i- 348 (535)
||++.++++. +|||||+|++|++|||+| ||+++|.++++.++++.+|+ +++.+
T Consensus 676 VGgN~~lls~---~klVAv~D~~G~~~DP~G--Ld~~EL~rl~~~~~s~~~yd~~~lS~gG~~~~r~~k~i~l~~~~~i~ 750 (1002)
T PTZ00324 676 LGSNELLLSK---EKTVGIVDGSGVLHDPEG--LNREELRRLAHHRLPAREFDESKLSPQGFLVLTDDRDVKLPDGTIVE 750 (1002)
T ss_pred HHHHHHHHhC---CEEEEEEcCCCEEECCCC--CCHHHHHHHHHcCCCcccCchhhccCCCceeecccccccCCccceec
Confidence 9999999864 799999999999999999 99999999999988888552 22222
Q ss_pred ----CC-CC---ccccceEEeeccc-ccccccccc--------ccccceEEEecCCCCCCHHHHHHHHhCCceeeccccc
Q psy1913 349 ----PT-DI---MFDKVDILVPAAI-EKVIRKSNA--------DKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFA 411 (535)
Q Consensus 349 ----~~-el---l~~~~DILiPaA~-~~~It~~na--------~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~la 411 (535)
.. ++ +..+|||||||+. +++||++|+ .+++||+||||||+|+||+|+.+|++|||+|+||+++
T Consensus 751 ~g~~~~~~~~l~~~~~vDlliPaggr~~~I~~~Na~~~~~~~~~~irakvIvEGANlpiT~eAr~~L~~~Gv~IipD~la 830 (1002)
T PTZ00324 751 SGLRFRNEFHLLPYSDADVFVPCGGRPRSVTLFNVGRFFDEKNGKLRFKIIVEGANLFITQDARLALEECGVILFKDASA 830 (1002)
T ss_pred cccccchhhccccCCCccEEEECCCCcCccCHHHHhhhhhccccCceeEEEEECCCCCCCHHHHHHHHHCCCEEcCcchh
Confidence 12 33 4789999999999 999999999 7899999999999999999999999999999999999
Q ss_pred cccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHH
Q psy1913 412 NAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHS 491 (535)
Q Consensus 412 NaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~ 491 (535)
|+|||+||||||+||++ .+++...+++ .- +-...++..+.++++ +|+++|++.
T Consensus 831 NsGGV~~S~~Evl~~l~----------l~d~ef~~~m------~~-----~~~~~~~~f~~~yv~------eV~~~L~~~ 883 (1002)
T PTZ00324 831 NKGGVTSSSLEVLAALA----------LSDEEFAEHM------CV-----KDATDAPEFYKKYVK------EILDRIEEN 883 (1002)
T ss_pred cCCCcEeeHHHHHhccc----------cchhhhhhhh------cc-----cccCCccchhHHHHH------HHHHHHHHH
Confidence 99999999999999986 2443211111 00 001123455555544 799999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHhHH--HHHHHHHHHHHcCCC
Q psy1913 492 MQRAGRDILEYAEKSDNKLDLRNAAYCS--ALFKIFKTYEEAGLE 534 (535)
Q Consensus 492 m~~a~~~v~~~a~~~~~~~~lR~AAy~~--ai~rv~~a~~~~G~~ 534 (535)
|..+|+.||+.+++.+ +++|+||-.+ .|.++.+.+...-+|
T Consensus 884 a~~ef~~i~~~~~~~~--~~~r~asd~lS~~In~l~~~l~~s~l~ 926 (1002)
T PTZ00324 884 ARLEFNAIWREELRTG--KPRCLLADVLSRKIVRLRADILSSDLW 926 (1002)
T ss_pred HHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999988874 8999999776 477777777654444
No 9
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=100.00 E-value=3.8e-71 Score=553.41 Aligned_cols=242 Identities=26% Similarity=0.286 Sum_probs=224.0
Q ss_pred ecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCc
Q psy1913 235 TGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDT 314 (535)
Q Consensus 235 TGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G 314 (535)
||||+.+|||.||.++|||||+++++++++ .++. +++|+||+||||||||+++|++|++.|+|||+|||++|
T Consensus 1 TGKp~~~GGs~gR~~aTg~Gv~~~~~~~~~------~~~~--~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G 72 (254)
T cd05313 1 TGKGLSWGGSLIRPEATGYGLVYFVEEMLK------DRNE--TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKG 72 (254)
T ss_pred CCCCCcCCCCCCCCchhHHHHHHHHHHHHH------hcCC--CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCc
Confidence 899999999999999999999999996665 4553 68999999999999999999999999999999999999
Q ss_pred eEeCCCCCCCCHHHH---HHHHHHcCC-cccC----CCCcccCC-CCccccceEEeeccccccccccccccc---cceEE
Q psy1913 315 AIVPDKGTEINYKDL---HTYKITKGT-IKGY----PGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKV---QAKII 382 (535)
Q Consensus 315 ~iynp~G~dLDi~~L---~~~~~~~g~-v~~~----~~a~~i~~-ell~~~~DILiPaA~~~~It~~na~~i---~AkiI 382 (535)
++|||+| ||+++| .++++++++ +..| ++++.+++ ++|+++||||+|||++++||.+||++| +||+|
T Consensus 73 ~i~~~~G--ld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~~DIliPcAl~~~I~~~na~~i~~~~ak~I 150 (254)
T cd05313 73 YVYDPDG--FTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYV 150 (254)
T ss_pred eEECCCC--CCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchhcCCCcEEEeccccccCCHHHHHHHHHcCCEEE
Confidence 9999999 999988 556666665 4554 36788888 999999999999999999999999999 89999
Q ss_pred EecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhh
Q psy1913 383 VEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKK 462 (535)
Q Consensus 383 vEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~ 462 (535)
+||||+|+||+|+++|++|||+|+||+++||||||+|||||+||+++++| +++
T Consensus 151 ~EgAN~p~t~~a~~~L~~rGI~vvPD~laNaGGVivs~~E~~qn~~~~~w-------~~e-------------------- 203 (254)
T cd05313 151 AEGANMPCTAEAIEVFRQAGVLFAPGKAANAGGVAVSGLEMSQNSQRLSW-------TAE-------------------- 203 (254)
T ss_pred EeCCCCCCCHHHHHHHHHCCcEEECchhhcCCCeeeeHHHhhcccccccC-------CHH--------------------
Confidence 99999999999999999999999999999999999999999999999766 653
Q ss_pred hhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHHHHHHHcCC
Q psy1913 463 IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGL 533 (535)
Q Consensus 463 ~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~ai~rv~~a~~~~G~ 533 (535)
+|+++|+++|.++|++|++++++++.++|||+|||++||+||++||+.||+
T Consensus 204 --------------------~V~~~l~~~m~~~~~~v~~~a~~~~~~~~lr~aA~~~a~~rv~~a~~~rG~ 254 (254)
T cd05313 204 --------------------EVDAKLKDIMKNIHDACAETAKKYGDPPDLVAGANIAGFLKVADAMLAQGV 254 (254)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 399999999999999999999999755899999999999999999999994
No 10
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=100.00 E-value=5.6e-62 Score=485.98 Aligned_cols=233 Identities=42% Similarity=0.671 Sum_probs=215.9
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCC
Q psy1913 242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKG 321 (535)
Q Consensus 242 GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G 321 (535)
|||.+|.++|||||+++++++++ .+|.. +++|+||+||||||||+++|++|++.|++||+|||++|+||||+|
T Consensus 1 GGs~~~~~aTg~GV~~~~~~~~~------~~~~~-~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~G 73 (244)
T PF00208_consen 1 GGSGGRSEATGYGVAYAIEAALE------HLGGD-SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDG 73 (244)
T ss_dssp TCHTTTTTHHHHHHHHHHHHHHH------HTTCH-SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTE
T ss_pred CCCCCCCcchHHHHHHHHHHHHH------HcCCC-CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCC
Confidence 89999999999999999996654 56754 589999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCC-cccCC-----CCcccCC--CCccccceEEeeccccccccccccc-ccc--ceEEEecCCCCC
Q psy1913 322 TEINYKDLHTYKITKGT-IKGYP-----GTKSAPT--DIMFDKVDILVPAAIEKVIRKSNAD-KVQ--AKIIVEAANGPL 390 (535)
Q Consensus 322 ~dLDi~~L~~~~~~~g~-v~~~~-----~a~~i~~--ell~~~~DILiPaA~~~~It~~na~-~i~--AkiIvEgAN~p~ 390 (535)
||+++|.++++++++ +..|+ +++.+++ ++|+++||||+|||++++||++|++ .|+ ||+||||||+|+
T Consensus 74 --ld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~ 151 (244)
T PF00208_consen 74 --LDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPL 151 (244)
T ss_dssp --EHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSB
T ss_pred --chHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhc
Confidence 999999999999998 99887 5677776 7999999999999999999999999 999 999999999999
Q ss_pred CHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhh
Q psy1913 391 TPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAM 470 (535)
Q Consensus 391 T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 470 (535)
||+|+++|++|||+|+||+++|+||||+|||||+||+++++| +++
T Consensus 152 t~~a~~~L~~rGI~viPD~~aNaGGvi~s~~E~~~~~~~~~~-------~~~---------------------------- 196 (244)
T PF00208_consen 152 TPEADEILRERGILVIPDFLANAGGVIVSYFEWLQNLQGLFW-------TEE---------------------------- 196 (244)
T ss_dssp SHHHHHHHHHTT-EEE-HHHHTTHHHHHHHHHHHHHHHTSST-------THH----------------------------
T ss_pred cHHHHHHHHHCCCEEEcchhhcCCCeEeehhhhcchhhhhhh-------hHH----------------------------
Confidence 999999999999999999999999999999999999998755 664
Q ss_pred HHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHHHHHHHcC
Q psy1913 471 YEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAG 532 (535)
Q Consensus 471 ~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~ai~rv~~a~~~~G 532 (535)
+|.++|+++|.++|++|++.|++++ +++|+|||++|++||+++|+.||
T Consensus 197 ------------~v~~~l~~~m~~~~~~v~~~a~~~~--~~~~~aA~~~A~~rv~~a~~~rG 244 (244)
T PF00208_consen 197 ------------EVFEKLEEIMDRAFKRVLERAEEEG--ISLRQAAYILAFERVAAAMKLRG 244 (244)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHT--SSHHHHHHHHHHHHHHHHHHHTT
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHhcC
Confidence 2889999999999999999999996 79999999999999999999998
No 11
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=100.00 E-value=2.3e-58 Score=455.51 Aligned_cols=226 Identities=45% Similarity=0.715 Sum_probs=212.8
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCC
Q psy1913 242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKG 321 (535)
Q Consensus 242 GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G 321 (535)
|||.+|.++|||||++++++++++ ++ .+++++||+||||||||+++|++|.+.|++||+|+|++|++|||+|
T Consensus 1 gG~~~~~~~Tg~Gv~~~~~~~~~~------~~--~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~G 72 (227)
T cd01076 1 GGSLGREEATGRGVAYATREALKK------LG--IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDG 72 (227)
T ss_pred CCCCCCCccchHHHHHHHHHHHHh------cC--CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCC
Confidence 799999999999999999977764 44 3689999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceEEeeccccccccccccccccceEEEecCCCCCCHHHHHHHHh
Q psy1913 322 TEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLK 400 (535)
Q Consensus 322 ~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~ 400 (535)
||+++|+++++++|++.+|++++.+++ +++..+||||||||++++||++|+++++||+|+||||+|+||+|+++|++
T Consensus 73 --ld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~~Dvlip~a~~~~i~~~~~~~l~a~~I~egAN~~~t~~a~~~L~~ 150 (227)
T cd01076 73 --LDVPALLAYKKEHGSVLGFPGAERITNEELLELDCDILIPAALENQITADNADRIKAKIIVEAANGPTTPEADEILHE 150 (227)
T ss_pred --CCHHHHHHHHHhcCCcccCCCceecCCccceeecccEEEecCccCccCHHHHhhceeeEEEeCCCCCCCHHHHHHHHH
Confidence 999999999999999999998888888 89999999999999999999999999999999999999999999999999
Q ss_pred CCceeeccccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccch
Q psy1913 401 KNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATE 480 (535)
Q Consensus 401 rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e 480 (535)
|||+|+||+++|+||||+|||||+||++++.| +++
T Consensus 151 rGi~~~PD~~aNaGGvi~s~~E~~~~~~~~~~-------~~~-------------------------------------- 185 (227)
T cd01076 151 RGVLVVPDILANAGGVTVSYFEWVQNLQGFYW-------DEE-------------------------------------- 185 (227)
T ss_pred CCCEEEChHHhcCcchhhhHHHHhhhhccCcC-------CHH--------------------------------------
Confidence 99999999999999999999999999998755 553
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHHH
Q psy1913 481 KDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFK 526 (535)
Q Consensus 481 ~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~ai~rv~~ 526 (535)
+|.++|++.|.+++.++++.+++++ +++|+|||..|++||++
T Consensus 186 --~v~~~l~~~i~~~~~~v~~~a~~~~--~~~~~aA~~~a~~rl~~ 227 (227)
T cd01076 186 --EVNSRLETKMREAFEAVLETAEKYG--VDLRTAAYVLALERVAE 227 (227)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhC--cCHHHHHHHHHHHHhhC
Confidence 2789999999999999999999995 89999999999999963
No 12
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=100.00 E-value=6.6e-58 Score=449.57 Aligned_cols=216 Identities=36% Similarity=0.525 Sum_probs=202.8
Q ss_pred chHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHH
Q psy1913 250 ATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDL 329 (535)
Q Consensus 250 aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L 329 (535)
||||||+++++++++ +++. +|+|+||+||||||||+++|++|++.|++||+|||++|++||| | ||++++
T Consensus 1 aTg~Gv~~~~~~~~~------~~~~--~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~-G--ld~~~l 69 (217)
T cd05211 1 ATGYGVVVAMKAAMK------HLGD--SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDP-G--ITTEEL 69 (217)
T ss_pred CchhHHHHHHHHHHH------HcCC--CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECC-C--CCHHHH
Confidence 799999999996654 5663 6899999999999999999999999999999999999999999 9 999999
Q ss_pred HHHHHHcCCcccCCCCcccCC-CCccccceEEeeccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeecc
Q psy1913 330 HTYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPD 408 (535)
Q Consensus 330 ~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD 408 (535)
++++++.+++..|+.++.+++ ++|..+||||||||++|+||++|+.+++||+|+|+||+|+|++++++|++|||+|+||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~~~~i~~~~a~~l~a~~V~e~AN~p~t~~a~~~L~~~Gi~v~Pd 149 (217)
T cd05211 70 INYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCALGNVIDLENAKKLKAKVVAEGANNPTTDEALRILHERGIVVAPD 149 (217)
T ss_pred HHHHHhhCCccccCcccccCcccceeccccEEeeccccCccChhhHhhcCccEEEeCCCCCCCHHHHHHHHHCCcEEECh
Confidence 999999999999987777777 8999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHH
Q psy1913 409 IFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSL 488 (535)
Q Consensus 409 ~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L 488 (535)
+++|+|||++|||||+||+++++| +++ +|.++|
T Consensus 150 ~~~NaGGvi~s~~E~~q~~~~~~w-------~~~----------------------------------------~v~~~l 182 (217)
T cd05211 150 IVANAGGVIVSYFEWVQNLQRLSW-------DAE----------------------------------------EVRSKL 182 (217)
T ss_pred HHhcCCCeEeEHHHhcCCccccCC-------CHH----------------------------------------HHHHHH
Confidence 999999999999999999998755 664 389999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHH
Q psy1913 489 THSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIF 525 (535)
Q Consensus 489 ~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~ai~rv~ 525 (535)
++.|.++|++|++.+++++ +|+|+|||+.|++||+
T Consensus 183 ~~~m~~~~~~v~~~a~~~~--~~~r~aA~~~a~~rva 217 (217)
T cd05211 183 EQVMTDIHNGVFAISERDG--VTMRAAANILAFERIA 217 (217)
T ss_pred HHHHHHHHHHHHHHHHHHC--cCHHHHHHHHHHHHhC
Confidence 9999999999999999995 8999999999999985
No 13
>PF02812 ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; InterPro: IPR006097 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the dimerisation region of these enzymes.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2BMA_C 1C1D_B 1BXG_A 1BW9_B 1C1X_A 2YFQ_B 3R3J_D 1V9L_C 1B26_C 2TMG_B ....
Probab=100.00 E-value=1.4e-46 Score=342.88 Aligned_cols=130 Identities=42% Similarity=0.783 Sum_probs=124.2
Q ss_pred CCceEEEEEeEEcCCCceEEeeeeEEEecCCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCC
Q psy1913 91 YSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPS 170 (535)
Q Consensus 91 p~r~~~v~~pv~~d~G~~~~~~gyRv~H~~~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~ 170 (535)
|+|+++|+|||.+|||....|+|||+|||+++||+||||||||++|.+|+++||++|||||||++||||||||||.+||+
T Consensus 1 pe~v~~~~~~~~~d~g~~~~~~g~~v~h~~~~GPa~GGiR~~~~~s~~ev~~LA~~MT~K~Al~~lp~GGaKggI~~dp~ 80 (131)
T PF02812_consen 1 PERVIQVRVPVVMDDGPITGLRGYRVQHSTARGPAKGGIRMHPYVSEEEVLRLARGMTYKCALAGLPFGGAKGGIKIDPK 80 (131)
T ss_dssp -SEEEEEEEEEEETTSCEEEEEEEEEEEE-SSSSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTTSS-EEEEEEEESSGG
T ss_pred CCEEEEEEEEEEeCCCCEEEEEEEEEEEcCCCCCCCCCeEEecCCCHHHHHHHHHHHHhhhhhccCCCCceeEEeecCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhccCccCCCCcccCCCCCCChhhHHHHHHHHhhH
Q psy1913 171 KYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKT 222 (535)
Q Consensus 171 ~~s~~Eler~~r~f~~~L~~~~~iGp~~dipapDvgT~~~~Mawi~d~y~~~ 222 (535)
.+|..|+|+++|+|+++|.+ +|||++|||||||||+++||+||+|+|+++
T Consensus 81 ~~s~~e~e~l~r~f~~~l~~--~i~~~~~i~a~Dvgt~~~dm~~i~~~~~~~ 130 (131)
T PF02812_consen 81 DLSDNERERLTRRFGRALSP--FIGPGRDIPAPDVGTGERDMAWIADEYRRV 130 (131)
T ss_dssp GS-HHHHHHHHHHHHHHHGG--GSBTTTEEEEBBTTBSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHH--HhccCcEEECCcCCCCHHHHHHHHHhchhc
Confidence 99999999999999999997 999999999999999999999999999875
No 14
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=100.00 E-value=5.3e-42 Score=332.73 Aligned_cols=196 Identities=26% Similarity=0.325 Sum_probs=172.5
Q ss_pred CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHH
Q psy1913 248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYK 327 (535)
Q Consensus 248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~ 327 (535)
+.+|||||++++++++++. ++ ..+++|++|+|||||+||+++|+.|.+.|++|++ +|.+.+
T Consensus 2 s~aTg~Gv~~~~~~~~~~~-----~~-~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv-------------~D~~~~ 62 (200)
T cd01075 2 SPPTAYGVFLGMKAAAEHL-----LG-TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIV-------------ADINEE 62 (200)
T ss_pred CChhHHHHHHHHHHHHHHh-----cC-CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE-------------EcCCHH
Confidence 5799999999999776541 23 3468999999999999999999999999999996 457777
Q ss_pred HHHHHHHHcCCcccCCCCcccCC-CCccccceEEeeccccccccccccccccceEEEecCCCCCC-HHHHHHHHhCCcee
Q psy1913 328 DLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLT-PAAHAMLLKKNVLI 405 (535)
Q Consensus 328 ~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T-~eA~~iL~~rGI~v 405 (535)
++.++++.. +++.++. +++..+|||++|||++++||.+|+++++|++|+|+||+|+| ++++++|++|||+|
T Consensus 63 ~~~~~~~~~-------g~~~v~~~~l~~~~~Dv~vp~A~~~~I~~~~~~~l~~~~v~~~AN~~~~~~~~~~~L~~~Gi~~ 135 (200)
T cd01075 63 AVARAAELF-------GATVVAPEEIYSVDADVFAPCALGGVINDDTIPQLKAKAIAGAANNQLADPRHGQMLHERGILY 135 (200)
T ss_pred HHHHHHHHc-------CCEEEcchhhccccCCEEEecccccccCHHHHHHcCCCEEEECCcCccCCHhHHHHHHHCCCEE
Confidence 887777653 3455666 78888999999999999999999999999999999999999 99999999999999
Q ss_pred eccccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHH
Q psy1913 406 IPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQ 485 (535)
Q Consensus 406 iPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~ 485 (535)
+||+++|+|||++|||||+|+. ++ +|.
T Consensus 136 ~Pd~~~NaGGv~~~~~e~~~~~------------~~-----------------------------------------~~~ 162 (200)
T cd01075 136 APDYVVNAGGLINVADELYGGN------------EA-----------------------------------------RVL 162 (200)
T ss_pred eCceeeeCcCceeehhHHhCCc------------HH-----------------------------------------HHH
Confidence 9999999999999999999852 11 267
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHH
Q psy1913 486 SSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIF 525 (535)
Q Consensus 486 ~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~ai~rv~ 525 (535)
++|+.+ .+++.+|++.+++++ +++|+|||.+|++||+
T Consensus 163 ~~~~~~-~~~~~~v~~~a~~~~--~~~~~aA~~~a~~r~~ 199 (200)
T cd01075 163 AKVEAI-YDTLLEIFAQAKQDG--ITTLEAADRMAEERIA 199 (200)
T ss_pred HHHHHH-HHHHHHHHHHHHHhC--cCHHHHHHHHHHHHhc
Confidence 788777 789999999999985 8999999999999985
No 15
>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase. Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.
Probab=99.96 E-value=4.8e-29 Score=218.52 Aligned_cols=100 Identities=44% Similarity=0.621 Sum_probs=92.5
Q ss_pred ceEEeeccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccccccccc
Q psy1913 357 VDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMS 436 (535)
Q Consensus 357 ~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~ 436 (535)
||||+|||++++||++|+++|+||+|+||||+|+|++|+++|++|||+|+||+++|+|||++||+||.||+++
T Consensus 3 ~DI~~PcA~~~~I~~~~a~~l~a~~V~egAN~~~t~~a~~~L~~rGi~~~PD~~~NaGGvi~s~~E~~~~~~~------- 75 (102)
T smart00839 3 CDIFIPCALQNVINEANANRLGAKIIAEGANMPLTDEADDILEDRGVLYAPDFAANAGGVIVSALEMLQNLAR------- 75 (102)
T ss_pred cCEEEeCCCcCcCCHHHHHHcCCeEEEecCCCCCCHHHHHHHHHCCCEEcCcceecCCCEEeehhhhhcccCC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998752
Q ss_pred cccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1913 437 FGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKS 506 (535)
Q Consensus 437 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~ 506 (535)
+++ +|..++.+.|.+++.++++.++++
T Consensus 76 ---~~e----------------------------------------~v~~~~~~~i~~~~~~v~~~a~~~ 102 (102)
T smart00839 76 ---TAE----------------------------------------EVFTDLSEIMRNALEEIFETAQKY 102 (102)
T ss_pred ---CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 232 388888999999999999998763
No 16
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=99.89 E-value=1.4e-21 Score=224.85 Aligned_cols=290 Identities=22% Similarity=0.265 Sum_probs=205.7
Q ss_pred eeeEEEecCCCCCCCCCeeeecCCCH---HHHHHHHHHhhhhhccccCCCCcceEEEecCC--CCCCHHHHH----HHHH
Q psy1913 112 QCYRCHHCTHKSPTKGGIRYALDVNP---DEVKALAALMTYKNSCSNVPFGGAKGGIRIDP--SKYNNRELE----RITR 182 (535)
Q Consensus 112 ~gyRv~H~~~~GPakGGiR~~p~vt~---dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP--~~~s~~Ele----r~~r 182 (535)
+-++.+|-..+-.|.||+|++ +... +|++.|+..+..||| .||-+|||||+.+.+ ..-++.|++ .-++
T Consensus 783 ~~vEGvHLRFg~VARGGLRws-DR~~D~rtEvlgLvKAQqvKNa--vIvpvGAKGgf~~k~lp~g~~RD~i~~eg~~~Yk 859 (1592)
T COG2902 783 PEVEGVHLRFGPVARGGLRWS-DRNQDFRTEVLGLVKAQQVKNA--VIVPVGAKGGFLLKRLPTGGDRDAIFAEGIACYK 859 (1592)
T ss_pred CcceEEEeecccccccccccc-ccchhHHHHHHHHHHHHHhcCC--cccccCCcceEecccCCCCCchHHHHHhhHHHHH
Confidence 345678888888899999998 5554 599999999999999 699999999999875 445666653 2345
Q ss_pred HHHHHHhcc--Ccc-----CC----------CCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCC
Q psy1913 183 KFALELIKK--NYV-----GP----------GIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIR 245 (535)
Q Consensus 183 ~f~~~L~~~--~~i-----Gp----------~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~ 245 (535)
.|++.|..- ++| -| ..-|.|||-||-. .-+|.-. .++.+| +.-||....|||.
T Consensus 860 ~Fi~~LlditDnii~~~vvpP~~vvr~d~dDpyLvVaaDKGTAt-FsD~AN~-vA~~~~--------fwl~DAFaSGgS~ 929 (1592)
T COG2902 860 AFISGLLDITDNIIDDQVVPPADVVRLDGDDPYLVVAADKGTAT-FSDIANS-VAREYG--------FWLGDAFASGGSA 929 (1592)
T ss_pred HHHHHHHHHHHHhhcCCcCCChhhhhcCCCCCeEEEecCCCccc-HHHHHHH-HHHHhC--------CChhhhhhcCCCC
Confidence 666655431 111 12 1126799999854 3344321 222233 3345555666666
Q ss_pred CCC----CchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc----ccHHHHHHHHHHHCCCeEEEEecCCceEe
Q psy1913 246 GRE----SATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF----GNVGFHAARYFRRGRAKCLAIVEHDTAIV 317 (535)
Q Consensus 246 gr~----~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf----GnVG~~~A~~L~e~GakVVaVsD~~G~iy 317 (535)
|.. +.|++|++++++..+ +.+|++ ++...+.+.|- |.|+..- .|...--++||+.|+++..+
T Consensus 930 GydHK~mGITarGaweaVkrhF------relg~d--~Q~~~fTvvgiGdmsGDVfgNg--MLLS~~irLiAAfDhrhIFi 999 (1592)
T COG2902 930 GYDHKKMGITARGAWEAVKRHF------RELGLD--TQTSPFTVVGIGDMSGDVFGNG--MLLSKHIRLIAAFDHRHIFI 999 (1592)
T ss_pred CCCccccccchhhHHHHHHHHH------HHhccc--CCCCceEEEeeCCCCccccccc--eeccccceeeEEecCCceee
Confidence 544 899999999999444 567874 67777777775 4455443 34555667999999999999
Q ss_pred CCCCCCCCHHHHHH---HHHHcCCcccCCCC------------------------------cccCC-C----C-------
Q psy1913 318 PDKGTEINYKDLHT---YKITKGTIKGYPGT------------------------------KSAPT-D----I------- 352 (535)
Q Consensus 318 np~G~dLDi~~L~~---~~~~~g~v~~~~~a------------------------------~~i~~-e----l------- 352 (535)
||+ .|+|...+.+ ....+.++.+|... +.+++ + |
T Consensus 1000 DP~-pd~a~S~~eR~RlF~lpRSsw~DYD~s~iS~gG~v~srs~K~I~Lspe~~~~lgi~~~~~~P~elitAILKapvDL 1078 (1592)
T COG2902 1000 DPN-PDLAVSFAERKRLFALPRSSWSDYDASKISKGGGVVSRSAKAITLSPEVIAALGIDKTELAPNELITAILKAPVDL 1078 (1592)
T ss_pred CCC-CCccccHHHHHHHhcCCcCchhhcchhhcCCCCeEEEeeccccCCCHHHHHHhCCCccccChHHHHHHHHcCchhh
Confidence 997 2488877766 33344455555310 01112 1 2
Q ss_pred -ccccceEEeeccc-ccccccccc--------ccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHh
Q psy1913 353 -MFDKVDILVPAAI-EKVIRKSNA--------DKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFE 422 (535)
Q Consensus 353 -l~~~~DILiPaA~-~~~It~~na--------~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~E 422 (535)
|.-..|.+|||.. .|.+..+|| .+++||+|+||||..+|+.+.-.|..+|..+.-|++.|+|||.+|..|
T Consensus 1079 Lw~GGIgTYVka~~etnA~vgDrANd~irv~g~e~raKvIgEGaNLgvTQ~gRief~~~Ggr~ntDaidNsaGVd~SD~E 1158 (1592)
T COG2902 1079 LWNGGIGTYVKASGETNADVGDRANDAIRVNGEEVRAKVIGEGANLGVTQRGRIEFALAGGRINTDAIDNSAGVDCSDHE 1158 (1592)
T ss_pred hccCCCceeEecCCCccchhhcccchhhccccceeceeEEeecccccccchhHHHHHHcCCeecchhhcccCCCcccchh
Confidence 3344678899998 677777665 456899999999999999999999999999999999999999999999
Q ss_pred hhh
Q psy1913 423 WLK 425 (535)
Q Consensus 423 w~q 425 (535)
..-
T Consensus 1159 Vni 1161 (1592)
T COG2902 1159 VNI 1161 (1592)
T ss_pred hhh
Confidence 753
No 17
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=99.82 E-value=1.8e-18 Score=206.07 Aligned_cols=312 Identities=20% Similarity=0.235 Sum_probs=223.1
Q ss_pred hhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEecCCCCCCCCCeeeecCC--CHHHHHHHHHHhhhhhccccC
Q psy1913 79 LRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDV--NPDEVKALAALMTYKNSCSNV 156 (535)
Q Consensus 79 ~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H~~~~GPakGGiR~~p~v--t~dEv~aLA~~MT~K~Al~~l 156 (535)
+.++..+.-+..|..-.++.+.- .-+..+|-...--|.||+|++... -..||+.|+..+..||| .|
T Consensus 698 Kldp~~l~~~p~P~P~~eifV~s----------~~~eGvHLR~g~VARGGlRwSdR~eDfRtEvlgL~kaQ~vKNa--vI 765 (1528)
T PF05088_consen 698 KLDPSFLPDLPEPRPYFEIFVYS----------PRFEGVHLRFGDVARGGLRWSDRPEDFRTEVLGLVKAQQVKNA--VI 765 (1528)
T ss_pred EEcHHHcCCCCCCCCcEEEEEEC----------CceEEEEccccccccCcccccCCHHHHHHHHHHHHHHHHhcCC--cc
Confidence 34566677777777666654322 234578888888899999996432 13699999999999999 79
Q ss_pred CCCcceEEEecCCCCC--CHH----HHHHHHHHHHHHHhcc-------CccCC---------CCc-ccCCCCCCChhhHH
Q psy1913 157 PFGGAKGGIRIDPSKY--NNR----ELERITRKFALELIKK-------NYVGP---------GID-VPAPDYNTSAREMS 213 (535)
Q Consensus 157 P~GGaKGgI~~dP~~~--s~~----Eler~~r~f~~~L~~~-------~~iGp---------~~d-ipapDvgT~~~~Ma 213 (535)
|-||||||+.++.... +.. |....++.|+++|.+- .++.| +-| |-|.|-||.. +.
T Consensus 766 vp~GsKGgfv~k~~~~~~~r~~~~~~~~~~y~~fi~~lLd~TDN~~~g~vv~p~~vv~~D~dDpYLVVAADKGTAt--fS 843 (1528)
T PF05088_consen 766 VPVGSKGGFVVKQLPDPADRDAWQAEGIACYKTFIRALLDLTDNLVDGKVVPPPDVVRYDGDDPYLVVAADKGTAT--FS 843 (1528)
T ss_pred cCCCCceeEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCCCcceeecCCCCCceEeecCCCcch--HH
Confidence 9999999999875433 444 3345678899999863 12223 223 6799999942 22
Q ss_pred HHHHHHhhHhCCCccCCCceEecccCcCCCCCCCC----CchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccc
Q psy1913 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRE----SATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFG 289 (535)
Q Consensus 214 wi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~----~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfG 289 (535)
=++.+-+.-+ |+.-|+-...|||.|.. +.|++|.+.+++..+ +.+|++ +....+.|+|.|
T Consensus 844 D~AN~ia~~~--------gfWLgDAFASGGS~GYDHK~mGITArGAWesvkrHF------relg~D--~q~~~fTvvGiG 907 (1528)
T PF05088_consen 844 DIANEIAAEY--------GFWLGDAFASGGSAGYDHKKMGITARGAWESVKRHF------RELGID--IQTDPFTVVGIG 907 (1528)
T ss_pred HHHHHHHHHc--------CCCcchhhhcCCcCCCCchhhccchhhHHHHHHHHH------HHhCCC--cCCCceEEEEec
Confidence 2222222222 45678888999999987 899999999999555 457874 577788888876
Q ss_pred cHHHHH--HHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHH----HHHHcC-CcccCCC-------------Cc---
Q psy1913 290 NVGFHA--ARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHT----YKITKG-TIKGYPG-------------TK--- 346 (535)
Q Consensus 290 nVG~~~--A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~----~~~~~g-~v~~~~~-------------a~--- 346 (535)
..+.-+ --.|.-...|+||..|+..-..||+- |++.-.+ +++..+ +..+|.. ++
T Consensus 908 DMsGDVFGNGMLlS~~irLvaAF~H~hIFiDP~P---D~~~Sf~ER~RLF~lprSsW~DYd~~lIS~GGGVf~R~aKsI~ 984 (1528)
T PF05088_consen 908 DMSGDVFGNGMLLSRHIRLVAAFNHRHIFIDPDP---DPAASFAERKRLFELPRSSWADYDKSLISKGGGVFSRSAKSIP 984 (1528)
T ss_pred CCCccccccchhcccceeEEEecCcceeecCcCC---ChhhhHHHHHHHhcCCCCChhhcCHHHhCCCCceeecccCCCC
Confidence 665422 23566778899999999999999995 4443222 111112 3444420 11
Q ss_pred --------------ccCC-C----CccccceEEeeccccccccc-----------------cccccccceEEEecCCCCC
Q psy1913 347 --------------SAPT-D----IMFDKVDILVPAAIEKVIRK-----------------SNADKVQAKIIVEAANGPL 390 (535)
Q Consensus 347 --------------~i~~-e----ll~~~~DILiPaA~~~~It~-----------------~na~~i~AkiIvEgAN~p~ 390 (535)
.+++ + ||..++|+|.--.++.-|-. -|+..++||+|+||+|..+
T Consensus 985 lS~e~r~~lgi~~~~~tp~eLi~aiL~apVDLlwnGGIGTYVKas~Es~~~vgDkaND~vRV~g~~lrakVvgEGgNLG~ 1064 (1528)
T PF05088_consen 985 LSPEMRAALGIEKDSLTPDELIRAILKAPVDLLWNGGIGTYVKASTESHADVGDKANDAVRVNGSELRAKVVGEGGNLGL 1064 (1528)
T ss_pred CCHHHHHHhCCCCCccCHHHHHHHHhcCccceEecCCccceEecCCCcccccccccCcceeechHHceEEEEeccccccc
Confidence 2334 3 57899999998877665543 2566779999999999999
Q ss_pred CHHHHHHHHhCCceeeccccccccCcchhhHhh
Q psy1913 391 TPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEW 423 (535)
Q Consensus 391 T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew 423 (535)
|..++--+..+|..+--|++-||+||-+|-.|.
T Consensus 1065 TQ~gRiE~a~~GGriNtDaiDNSaGVd~SDhEV 1097 (1528)
T PF05088_consen 1065 TQRGRIEYALNGGRINTDAIDNSAGVDCSDHEV 1097 (1528)
T ss_pred chHHHHHHHHcCCccchhhhcccCCCcCccchh
Confidence 999998899999999999999999999999996
No 18
>PRK08374 homoserine dehydrogenase; Provisional
Probab=99.21 E-value=1.2e-11 Score=129.40 Aligned_cols=125 Identities=18% Similarity=0.237 Sum_probs=93.2
Q ss_pred cEEEEEccccHHHHHHHHHHH--------CC--CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCC---Ccc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRR--------GR--AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPG---TKS 347 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e--------~G--akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~---a~~ 347 (535)
.+|+||||||||++++++|.+ .| .+|++|+|++|++|||+| ||++++.+++++++.+..|+. ...
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~G--id~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPED--IDLREAKEVKENFGKLSNWGNDYEVYN 80 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCC--CChHHHHHhhhccCchhhccccccccC
Confidence 589999999999999999987 46 799999999999999999 999999999999988877752 223
Q ss_pred cCC-CCc-cccceEEeeccccccccccccccccceEEEecCCC------CCC---HHHHHHHHhCCceeecccccccc
Q psy1913 348 APT-DIM-FDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANG------PLT---PAAHAMLLKKNVLIIPDIFANAG 414 (535)
Q Consensus 348 i~~-ell-~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~------p~T---~eA~~iL~~rGI~viPD~laNaG 414 (535)
++. +++ ..+|||+|.|+ +.+++..+.++++.+|-+- |++ .+..++-+++|+.+. |-+|.|
T Consensus 81 ~~~~ell~~~~~DVvVd~t-----~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~--~ea~v~ 151 (336)
T PRK08374 81 FSPEEIVEEIDADIVVDVT-----NDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYL--FEATVM 151 (336)
T ss_pred CCHHHHHhcCCCCEEEECC-----CcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEE--Eecccc
Confidence 344 677 58999999777 3567777655444444322 322 344455567888776 455554
No 19
>PRK06392 homoserine dehydrogenase; Provisional
Probab=99.15 E-value=8.4e-11 Score=122.79 Aligned_cols=116 Identities=15% Similarity=0.292 Sum_probs=83.2
Q ss_pred EEEEEccccHHHHHHHHHHH--------CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CC
Q psy1913 282 TYIVQGFGNVGFHAARYFRR--------GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DI 352 (535)
Q Consensus 282 ~VaIQGfGnVG~~~A~~L~e--------~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-el 352 (535)
+|+||||||||+++++.|.+ .+.+||+|+|++|++|+|+| ||++++++++++ |++..++- +.++. ++
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~G--ldl~~l~~~~~~-g~l~~~~~-~~~~~~~l 77 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERG--LDIGKIISYKEK-GRLEEIDY-EKIKFDEI 77 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcC--CChHHHHHHHhc-CccccCCC-CcCCHHHH
Confidence 79999999999999999987 36899999999999999999 999999998866 66655531 11233 56
Q ss_pred ccccceEEeeccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHh
Q psy1913 353 MFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFE 422 (535)
Q Consensus 353 l~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~E 422 (535)
+..++||+|.|+..+ .+++.+..+ ..-..++|+.|+ .+|.|.+...|-|
T Consensus 78 l~~~~DVvVE~t~~~-~~g~~~~~~-----------------~~~aL~~G~hVV---TaNKgalA~~~~e 126 (326)
T PRK06392 78 FEIKPDVIVDVTPAS-KDGIREKNL-----------------YINAFEHGIDVV---TANKSGLANHWHD 126 (326)
T ss_pred hcCCCCEEEECCCCC-CcCchHHHH-----------------HHHHHHCCCEEE---cCCHHHHHhhHHH
Confidence 677999999998653 233222111 122345777774 6777666544433
No 20
>PRK06270 homoserine dehydrogenase; Provisional
Probab=98.72 E-value=3.9e-08 Score=103.26 Aligned_cols=123 Identities=19% Similarity=0.294 Sum_probs=89.1
Q ss_pred cEEEEEccccHHHHHHHHHHHC----------CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRG----------RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT 350 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~----------GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ 350 (535)
.+|+|+|||+||+.+++.|.+. +.+||+|+|+++++|+++| +|++++.++.+..+.+..|++.....+
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~G--i~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDG--LDLELALKVKEETGKLADYPEGGGEIS 80 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCC--CCHHHHHHHHhccCCcccCccccccCC
Confidence 5899999999999999999765 6899999999999999999 999999998888877766654332222
Q ss_pred --CCc-cccceEEeeccccccccccccccc-----c--ceEEEecCCCCC---CHHHHHHHHhCCceee
Q psy1913 351 --DIM-FDKVDILVPAAIEKVIRKSNADKV-----Q--AKIIVEAANGPL---TPAAHAMLLKKNVLII 406 (535)
Q Consensus 351 --ell-~~~~DILiPaA~~~~It~~na~~i-----~--AkiIvEgAN~p~---T~eA~~iL~~rGI~vi 406 (535)
+++ ..++||+|.|+..+.-+.+.+..+ + ..+|+ +--.|. -++..+..+++|+.+.
T Consensus 81 ~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt-aNK~pla~~~~eL~~~A~~~g~~~~ 148 (341)
T PRK06270 81 GLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT-SNKGPLALAYKELKELAKKNGVRFR 148 (341)
T ss_pred HHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc-CCcHHHHhhHHHHHHHHHHcCCEEE
Confidence 555 468999999998766554444333 1 23333 222443 2455555667788765
No 21
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.26 E-value=6.8e-06 Score=69.46 Aligned_cols=84 Identities=24% Similarity=0.289 Sum_probs=64.4
Q ss_pred chHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHH
Q psy1913 250 ATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDL 329 (535)
Q Consensus 250 aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L 329 (535)
+||+|++..++.+.+ ..+. ++++++++|+|+|++|+.+++.|.+.|.+.|.++|+
T Consensus 1 ~t~~~~~~~l~~~~~------~~~~--~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r----------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGK------VTNK--SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR----------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHH------HhCC--CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-----------------
Confidence 489999999986553 3443 578999999999999999999999986555555443
Q ss_pred HHHHHHcCCcccCCCCcccCCCCccccceEEeecccccccccc--ccccccceEEEecC
Q psy1913 330 HTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKS--NADKVQAKIIVEAA 386 (535)
Q Consensus 330 ~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~~~~It~~--na~~i~AkiIvEgA 386 (535)
||||+|+....+..+ +....+..+|++.|
T Consensus 56 ----------------------------di~i~~~~~~~~~~~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 ----------------------------DILVTATPAGVPVLEEATAKINEGAVVIDLA 86 (86)
T ss_pred ----------------------------CEEEEcCCCCCCchHHHHHhcCCCCEEEecC
Confidence 999999986666655 56666677777654
No 22
>PLN02700 homoserine dehydrogenase family protein
Probab=98.14 E-value=5.8e-06 Score=88.20 Aligned_cols=129 Identities=12% Similarity=0.167 Sum_probs=74.5
Q ss_pred CcEEEEEccccHHHHHHHHHHHC-------C--CeEEEEecCCceEeCCC----CCCCCHHHHHHH---HHHcCCcccCC
Q psy1913 280 NKTYIVQGFGNVGFHAARYFRRG-------R--AKCLAIVEHDTAIVPDK----GTEINYKDLHTY---KITKGTIKGYP 343 (535)
Q Consensus 280 g~~VaIQGfGnVG~~~A~~L~e~-------G--akVVaVsD~~G~iynp~----G~dLDi~~L~~~---~~~~g~v~~~~ 343 (535)
-..|+|.|||+||+.+++.|.++ | .+|++|+|++++++|++ | ||++.+.+. +.+...+..|+
T Consensus 3 ~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~G--ldl~~~~~~~~~~~~~~~~~~~~ 80 (377)
T PLN02700 3 KIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEE--LDDALLSEVCLAKSKGSPLSALG 80 (377)
T ss_pred EEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCC--CCHHHHHHHHHhhccccchhhhh
Confidence 36899999999999999998653 3 58999999999999975 9 998887763 33333333331
Q ss_pred C---C-cccCCCCccccceEEeeccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchh
Q psy1913 344 G---T-KSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVS 419 (535)
Q Consensus 344 ~---a-~~i~~ell~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivS 419 (535)
. . ..+++. ..+.+++ ..+ +....+...++|+..+...+.+...-+.++|+.|| .+|.+.+..+
T Consensus 81 ~~~~~~~~~~~~--~~~~~~~------~~~--~~~~~~~~~ViVD~T~s~~~~~~y~~aL~~G~hVV---TaNK~~~a~~ 147 (377)
T PLN02700 81 ALAGGCQVFNNS--ELSRKVI------DIA--TLLGKSTGLVVVDCSASMETIGALNEAVDLGCCIV---LANKKPLTST 147 (377)
T ss_pred hccccccccccc--cccchhh------hHH--HHhhccCCCEEEECCCChHHHHHHHHHHHCCCeEE---cCCchHhccC
Confidence 1 0 000000 0000000 000 00001112455555554433344455667888884 7888777776
Q ss_pred hHhh
Q psy1913 420 YFEW 423 (535)
Q Consensus 420 y~Ew 423 (535)
|-||
T Consensus 148 ~~~~ 151 (377)
T PLN02700 148 LEDY 151 (377)
T ss_pred HHHH
Confidence 6554
No 23
>PRK06813 homoserine dehydrogenase; Validated
Probab=98.10 E-value=5.9e-06 Score=87.35 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=77.9
Q ss_pred cEEEEEccccHHHHHHHHHHHC----------CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRG----------RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT 350 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~----------GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ 350 (535)
.+|+|.|||+||+.+++.|.++ ..+|++|+|+++.+++++| +|++.+++.......+..|.. ...
T Consensus 3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~g--i~~~~~l~~~~~~~~~~~~~~---~~~ 77 (346)
T PRK06813 3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDG--LSIHHLLRYGGGSCAIEKYIE---HHP 77 (346)
T ss_pred eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccC--CChhhhhhccccccchhhhhc---cCh
Confidence 5899999999999999999753 2589999999999999999 998886654321111111110 011
Q ss_pred -CCc--cccceEEeeccccccccccccccc-c----c-eEEEecCCCCCC---HHHHHHHHhCCceee
Q psy1913 351 -DIM--FDKVDILVPAAIEKVIRKSNADKV-Q----A-KIIVEAANGPLT---PAAHAMLLKKNVLII 406 (535)
Q Consensus 351 -ell--~~~~DILiPaA~~~~It~~na~~i-~----A-kiIvEgAN~p~T---~eA~~iL~~rGI~vi 406 (535)
+++ ..++||+|.|+..+..+.+.+..+ + + +-||-+--.|++ +|..++-+++|+.+.
T Consensus 78 ~~~~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~ 145 (346)
T PRK06813 78 EERATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIR 145 (346)
T ss_pred HHHhcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEE
Confidence 233 346899999988777777776655 2 1 334433333332 344444456666665
No 24
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.80 E-value=6.7e-05 Score=71.46 Aligned_cols=82 Identities=24% Similarity=0.337 Sum_probs=54.4
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD 355 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~ 355 (535)
.+.|+++.|.|||.||+.+|+.|...|++|+. +|+|+-.+++...+ +| +..+- +.+ .
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V-------------~e~DPi~alqA~~d-----Gf---~v~~~~~a~-~ 77 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTV-------------TEIDPIRALQAAMD-----GF---EVMTLEEAL-R 77 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-EEEE-------------E-SSHHHHHHHHHT-----T----EEE-HHHHT-T
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEE-------------EECChHHHHHhhhc-----Cc---EecCHHHHH-h
Confidence 47999999999999999999999999999988 78998877776543 22 21111 333 4
Q ss_pred cceEEeeccc-cccccccccccccce
Q psy1913 356 KVDILVPAAI-EKVIRKSNADKVQAK 380 (535)
Q Consensus 356 ~~DILiPaA~-~~~It~~na~~i~Ak 380 (535)
.+||||-|+. .++|+.+-..+++=.
T Consensus 78 ~adi~vtaTG~~~vi~~e~~~~mkdg 103 (162)
T PF00670_consen 78 DADIFVTATGNKDVITGEHFRQMKDG 103 (162)
T ss_dssp T-SEEEE-SSSSSSB-HHHHHHS-TT
T ss_pred hCCEEEECCCCccccCHHHHHHhcCC
Confidence 7899999887 467888887777643
No 25
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.52 E-value=0.00018 Score=75.62 Aligned_cols=87 Identities=16% Similarity=0.236 Sum_probs=61.5
Q ss_pred CCcEEEEEccccHHHHHHHHHHHC----------CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCccc
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRG----------RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSA 348 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~----------GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i 348 (535)
+-.+|+|.|||+||+.++++|.++ ..+|++|+|+++..+. + +|...+ ..+...+... .
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~--~--~~~~~~-~~~~~~~~~~-------~ 69 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR--D--LDLLNA-EVWTTDGALS-------L 69 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc--c--ccccch-hhheeccccc-------c
Confidence 346899999999999999999874 3599999999998885 3 444444 3333332221 1
Q ss_pred CC-CCccccceEEeeccccccccccccccc
Q psy1913 349 PT-DIMFDKVDILVPAAIEKVIRKSNADKV 377 (535)
Q Consensus 349 ~~-ell~~~~DILiPaA~~~~It~~na~~i 377 (535)
.. -++..+.||++++...+.-+.+.+..+
T Consensus 70 ~~~~~~~~~~dvvve~~~~d~~~~~~~~~~ 99 (333)
T COG0460 70 GDEVLLDEDIDVVVELVGGDVEPAEPADLY 99 (333)
T ss_pred cHhhhccccCCEEEecCcccCCchhhHHHH
Confidence 12 345778999999998877666544444
No 26
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.51 E-value=0.0021 Score=66.18 Aligned_cols=192 Identities=19% Similarity=0.248 Sum_probs=110.5
Q ss_pred EEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc--cc
Q psy1913 282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD--KV 357 (535)
Q Consensus 282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~--~~ 357 (535)
+|.|+|+|++|+.+|+.|.+.|.+|+. .|.+.+.+.+..+ .| ....+. ++... .+
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v-------------~dr~~~~~~~~~~-~g-------~~~~~~~~e~~~~~~~~ 60 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVG-------------YDRNPEAVEALAE-EG-------ATGADSLEELVAKLPAP 60 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEE-------------EECCHHHHHHHHH-CC-------CeecCCHHHHHhhcCCC
Confidence 799999999999999999999999876 3455566655543 22 222222 44432 46
Q ss_pred eEEeecccccccccccccc----cc-ceEEEecCCC-C-CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccc
Q psy1913 358 DILVPAAIEKVIRKSNADK----VQ-AKIIVEAANG-P-LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHS 430 (535)
Q Consensus 358 DILiPaA~~~~It~~na~~----i~-AkiIvEgAN~-p-~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~ 430 (535)
|+++-|........+-... ++ -.+|+...+. | .+.+..+.++++|+.|+ | ...+||+... +. .+ .+
T Consensus 61 dvvi~~v~~~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~-d-apvsG~~~~a--~~--g~-~~ 133 (301)
T PRK09599 61 RVVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV-D-VGTSGGVWGL--ER--GY-CL 133 (301)
T ss_pred CEEEEEecCCcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEE-e-CCCCcCHHHH--hc--CC-eE
Confidence 8877776544222222222 22 2567777655 4 45667788999999998 7 6788886432 21 11 11
Q ss_pred cccccccccchh---hHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy1913 431 SLGRMSFGYDKE---ISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSD 507 (535)
Q Consensus 431 ~~grl~~~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~ 507 (535)
..| . +++ +.+.+++.+.. .+...+-.. --+--+.-.++++.-|...+..++.+-+.++++++
T Consensus 134 ~~g----G-~~~~~~~~~~~l~~~~~----~~~~~~~~~------G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~ 198 (301)
T PRK09599 134 MIG----G-DKEAVERLEPIFKALAP----RAEDGYLHA------GPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASR 198 (301)
T ss_pred Eec----C-CHHHHHHHHHHHHHHcc----cccCCeEeE------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 121 1 222 12222222211 000000000 00112344568899999999999999999999943
Q ss_pred CCCCHHHHH
Q psy1913 508 NKLDLRNAA 516 (535)
Q Consensus 508 ~~~~lR~AA 516 (535)
.++|+.+..
T Consensus 199 ~gld~~~~~ 207 (301)
T PRK09599 199 FDLDLAAVA 207 (301)
T ss_pred CCCCHHHHH
Confidence 357765443
No 27
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.46 E-value=0.0026 Score=58.16 Aligned_cols=114 Identities=11% Similarity=0.122 Sum_probs=71.8
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCC-CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGR-AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM 353 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~G-akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell 353 (535)
++++++|.|.|.|++|..+++.|.+.| .+|+. . |-+.+.+.+..++.+.- .. .....+ +.
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v-~------------~r~~~~~~~~~~~~~~~-~~--~~~~~~~~~~- 78 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVI-V------------NRTLEKAKALAERFGEL-GI--AIAYLDLEEL- 78 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEE-E------------cCCHHHHHHHHHHHhhc-cc--ceeecchhhc-
Confidence 367899999999999999999999987 45554 3 24455555544443210 00 001112 22
Q ss_pred cccceEEeeccccccccccccc----cc-cceEEEecCCCC-CCHHHHHHHHhCCceeecc
Q psy1913 354 FDKVDILVPAAIEKVIRKSNAD----KV-QAKIIVEAANGP-LTPAAHAMLLKKNVLIIPD 408 (535)
Q Consensus 354 ~~~~DILiPaA~~~~It~~na~----~i-~AkiIvEgAN~p-~T~eA~~iL~~rGI~viPD 408 (535)
-.++|++|-|+.....+.+... .+ .-++|++-+-.| .| +..+.++++|+.++|-
T Consensus 79 ~~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~-~l~~~~~~~g~~~v~g 138 (155)
T cd01065 79 LAEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLET-PLLKEARALGAKTIDG 138 (155)
T ss_pred cccCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCC-HHHHHHHHCCCceeCC
Confidence 3589999999987665222211 12 236777776556 45 7777889999887764
No 28
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=97.45 E-value=0.00023 Score=83.16 Aligned_cols=87 Identities=13% Similarity=0.177 Sum_probs=59.8
Q ss_pred CCcEEEEEccccHHHHHHHHHHHC---------CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRG---------RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP 349 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~---------GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~ 349 (535)
+..+|+|.|||+||+.+++.|.+. ..+|++|+++++.+++|+| +|.+.+.+...... ..+.-...++
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g--~~~~~~~~~~~~~~--~~~~~~~~~~ 539 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHG--IDLDNWREELAEAG--EPFDLDRLIR 539 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCC--CCHHHHHHHHhhcc--CCCCHHHHHH
Confidence 568999999999999999999753 3579999999999999999 99887665544321 1111001111
Q ss_pred C-CCccccceEEeeccccccc
Q psy1913 350 T-DIMFDKVDILVPAAIEKVI 369 (535)
Q Consensus 350 ~-ell~~~~DILiPaA~~~~I 369 (535)
. .-...+.||+|.|+....+
T Consensus 540 ~~~~~~~~~~vvvd~t~~~~~ 560 (819)
T PRK09436 540 LVKEYHLLNPVIVDCTSSQAV 560 (819)
T ss_pred HHhhcCCCCCEEEECCCChHH
Confidence 0 1123467899998865443
No 29
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.42 E-value=0.00069 Score=69.92 Aligned_cols=106 Identities=21% Similarity=0.310 Sum_probs=74.5
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC--C--CC
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP--T--DI 352 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~--~--el 352 (535)
++.|++|.|.|+|.+|+.+|+.|...|++|+. .+ -+.+.+.+.. +.+ ...++ . +.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v-~~------------R~~~~~~~~~-~~g-------~~~~~~~~l~~~ 206 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGARVFV-GA------------RSSADLARIT-EMG-------LIPFPLNKLEEK 206 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCCEEEE-Ee------------CCHHHHHHHH-HCC-------CeeecHHHHHHH
Confidence 57899999999999999999999999998875 22 2333333322 111 12221 1 22
Q ss_pred ccccceEEeecccccccccccccccc-ceEEEecCCCC-CCHHHHHHHHhCCceee
Q psy1913 353 MFDKVDILVPAAIEKVIRKSNADKVQ-AKIIVEAANGP-LTPAAHAMLLKKNVLII 406 (535)
Q Consensus 353 l~~~~DILiPaA~~~~It~~na~~i~-AkiIvEgAN~p-~T~eA~~iL~~rGI~vi 406 (535)
+ .++||+|-|.....++.+....++ -.+|+.-|-.| -|+- +..+++|+..+
T Consensus 207 l-~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~Pg~tdf--~~Ak~~G~~a~ 259 (287)
T TIGR02853 207 V-AEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKPGGTDF--EYAKKRGIKAL 259 (287)
T ss_pred h-ccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCCCCCCH--HHHHHCCCEEE
Confidence 2 489999999987778877666664 36889999888 4554 45688998765
No 30
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.25 E-value=0.00052 Score=64.50 Aligned_cols=106 Identities=15% Similarity=0.167 Sum_probs=71.0
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceE
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDI 359 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DI 359 (535)
++|.|.|+|++|+.+|+.|.+.|+.|.+ .|.+.+.+.+..+.. ++..+. .=+...||+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~-------------~d~~~~~~~~~~~~g--------~~~~~s~~e~~~~~dv 60 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTV-------------YDRSPEKAEALAEAG--------AEVADSPAEAAEQADV 60 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEE-------------EESSHHHHHHHHHTT--------EEEESSHHHHHHHBSE
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEe-------------eccchhhhhhhHHhh--------hhhhhhhhhHhhcccc
Confidence 5899999999999999999999999988 557777777776652 343443 223457899
Q ss_pred Eeecccc-----ccccccc-cccc-cceEEEecCCCC--CCHHHHHHHHhCCceeec
Q psy1913 360 LVPAAIE-----KVIRKSN-ADKV-QAKIIVEAANGP--LTPAAHAMLLKKNVLIIP 407 (535)
Q Consensus 360 LiPaA~~-----~~It~~n-a~~i-~AkiIvEgAN~p--~T~eA~~iL~~rGI~viP 407 (535)
++-|-.. .++..++ +..+ +-++|++-.+.. .+.+..+.|.++|+.|+=
T Consensus 61 vi~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vd 117 (163)
T PF03446_consen 61 VILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVD 117 (163)
T ss_dssp EEE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEE
T ss_pred eEeecccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeee
Confidence 9888654 3333322 2223 357888887765 456778889999998873
No 31
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.24 E-value=0.00059 Score=74.17 Aligned_cols=106 Identities=20% Similarity=0.301 Sum_probs=71.0
Q ss_pred CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHH
Q psy1913 248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYK 327 (535)
Q Consensus 248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~ 327 (535)
.-.||.|++.++..+ .++ .+.|++|+|.|+|++|+.+|+.|...|++|+. +|.|..
T Consensus 191 ~~gt~~s~~~ai~ra---------t~~--~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV-------------~d~dp~ 246 (425)
T PRK05476 191 RYGTGESLLDGIKRA---------TNV--LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIV-------------TEVDPI 246 (425)
T ss_pred cHHHHhhhHHHHHHh---------ccC--CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEE-------------EcCCch
Confidence 355788877776622 133 36899999999999999999999999999888 557665
Q ss_pred HHHHHHHHcCCcccCCCCcccCC-CCccccceEEeeccc-cccccccccccccc-eEEEecC
Q psy1913 328 DLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAI-EKVIRKSNADKVQA-KIIVEAA 386 (535)
Q Consensus 328 ~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~-~~~It~~na~~i~A-kiIvEgA 386 (535)
...+.... | ...++- +++ ..+||+|.|+. .+.|+.+....++. .+++-++
T Consensus 247 ra~~A~~~-G-------~~v~~l~eal-~~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 247 CALQAAMD-G-------FRVMTMEEAA-ELGDIFVTATGNKDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred hhHHHHhc-C-------CEecCHHHHH-hCCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcC
Confidence 55443322 1 122222 333 37999999975 45677666666653 3444433
No 32
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.24 E-value=0.0059 Score=61.80 Aligned_cols=197 Identities=20% Similarity=0.196 Sum_probs=124.9
Q ss_pred EEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc--ccc
Q psy1913 282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF--DKV 357 (535)
Q Consensus 282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~--~~~ 357 (535)
++-++|+|..|..+++.|.+.|..||+ -|+|.+++.+++... .. ++..++. ..|. --+
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~ghdvV~-------------yD~n~~av~~~~~~g--a~---~a~sl~el~~~L~~pr~v 63 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGHDVVG-------------YDVNQTAVEELKDEG--AT---GAASLDELVAKLSAPRIV 63 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCCeEEE-------------EcCCHHHHHHHHhcC--Cc---cccCHHHHHHhcCCCcEE
Confidence 466899999999999999999999999 789999998887653 11 1221111 1222 223
Q ss_pred eEEeecc-ccccccccccccccc-eEEEecCCCCC--CHHHHHHHHhCCceeeccccccccCcchhhHhhhhcccccccc
Q psy1913 358 DILVPAA-IEKVIRKSNADKVQA-KIIVEAANGPL--TPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLG 433 (535)
Q Consensus 358 DILiPaA-~~~~It~~na~~i~A-kiIvEgAN~p~--T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~g 433 (535)
=+.+|++ +.+.+=.+-++.+.+ -+|++|-|.-. +..-.+.|.++||.++ =.--+||+.-. ..++.+
T Consensus 64 WlMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~fl--D~GTSGG~~G~-------~~G~~l- 133 (300)
T COG1023 64 WLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFL--DVGTSGGVWGA-------ERGYCL- 133 (300)
T ss_pred EEEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEE--eccCCCCchhh-------hcCceE-
Confidence 4678887 555555556666655 79999999885 3444567999999998 36788888432 122222
Q ss_pred ccccccchhhHHHHHHhhhhhhhh-hhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Q psy1913 434 RMSFGYDKEISDLLLSSIDTSLSD-TFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDL 512 (535)
Q Consensus 434 rl~~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~l 512 (535)
|-.. + +..+++++-|-+.+.. -.|-- ..-+.-.-.++ --||.++|+-|-+|+.+=+++-++.+-.+|+
T Consensus 134 -MiGG-~-~~a~~~~~pif~~lA~ge~Gyl--~~Gp~GsGHfv------KMVHNGIEYGmM~a~aEGfelL~~s~fD~D~ 202 (300)
T COG1023 134 -MIGG-D-EEAVERLEPIFKALAPGEDGYL--YCGPSGSGHFV------KMVHNGIEYGMMQAIAEGFELLKNSPFDYDL 202 (300)
T ss_pred -EecC-c-HHHHHHHHHHHHhhCcCcCccc--cccCCCcchhH------HHHhccHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 2222 2 3345555555444422 00000 00000000111 2599999999999999999999987666787
Q ss_pred HHHHh
Q psy1913 513 RNAAY 517 (535)
Q Consensus 513 R~AAy 517 (535)
+.-|=
T Consensus 203 ~~VA~ 207 (300)
T COG1023 203 EAVAE 207 (300)
T ss_pred HHHHH
Confidence 76553
No 33
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=97.22 E-value=0.00062 Score=79.44 Aligned_cols=130 Identities=12% Similarity=0.082 Sum_probs=79.1
Q ss_pred CCcEEEEEccccHHHHHHHHHHHC--------C--CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCccc
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRG--------R--AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSA 348 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~--------G--akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i 348 (535)
+-.+|+|.|||+||+.+++.|.++ | .+|++|+|+++.+++++| +|...+.+....... .++-...+
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~g--i~~~~~~~~~~~~~~--~~~~~~~~ 532 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDG--LDASRALAFFDDEAV--EWDEESLF 532 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccC--CCHHHHHhhHHhhcC--CccHHHHH
Confidence 457899999999999999999753 3 589999999999999999 998877765543221 11100000
Q ss_pred CCCCc---cccceEEeeccccccccccccccccceEEEecCCCC-CC------HHHHHHHHhCCceeeccccccccCc
Q psy1913 349 PTDIM---FDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGP-LT------PAAHAMLLKKNVLIIPDIFANAGGV 416 (535)
Q Consensus 349 ~~ell---~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p-~T------~eA~~iL~~rGI~viPD~laNaGGV 416 (535)
+++ ..+.+|+|.|.....+...-..-+++..=|=-||-. .+ ++..+.-+++|+.+. |=++.||-
T Consensus 533 --e~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~--yEasV~~g 606 (810)
T PRK09466 533 --LWLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWL--YNATVGAG 606 (810)
T ss_pred --HHHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEE--Eeceeeec
Confidence 222 233469999986543332222333333333344542 21 233344567787776 44555543
No 34
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.07 E-value=0.002 Score=69.97 Aligned_cols=112 Identities=17% Similarity=0.277 Sum_probs=70.3
Q ss_pred HHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC
Q psy1913 270 CEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP 349 (535)
Q Consensus 270 ~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~ 349 (535)
+..|+ .+.|++|+|+|+|++|..+|+.+...|++|++ +|.|...+...+. .| +..++
T Consensus 194 r~t~~--~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV-------------~d~d~~R~~~A~~-~G-------~~~~~ 250 (413)
T cd00401 194 RATDV--MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIV-------------TEVDPICALQAAM-EG-------YEVMT 250 (413)
T ss_pred HhcCC--CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE-------------EECChhhHHHHHh-cC-------CEEcc
Confidence 34454 47899999999999999999999999999888 5577666655443 22 22222
Q ss_pred C-CCccccceEEeeccc-cccccccccccccc-eEEEecCCCCCCHHHHHHHHhCCceee
Q psy1913 350 T-DIMFDKVDILVPAAI-EKVIRKSNADKVQA-KIIVEAANGPLTPAAHAMLLKKNVLII 406 (535)
Q Consensus 350 ~-ell~~~~DILiPaA~-~~~It~~na~~i~A-kiIvEgAN~p~T~eA~~iL~~rGI~vi 406 (535)
. +.+ ..+||+|.|+. ..+++.+-...++. .+|+-.+..+.+-.... |..+.+.+.
T Consensus 251 ~~e~v-~~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~-L~~~el~i~ 308 (413)
T cd00401 251 MEEAV-KEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKG-LKENAVEVV 308 (413)
T ss_pred HHHHH-cCCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHH-HHhhccEEE
Confidence 2 333 36899999986 45566554555542 23333334444322223 455655443
No 35
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.96 E-value=0.0024 Score=70.20 Aligned_cols=97 Identities=22% Similarity=0.301 Sum_probs=66.0
Q ss_pred HHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcc
Q psy1913 268 YMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKS 347 (535)
Q Consensus 268 ~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~ 347 (535)
.++..+. .+.|++|.|.|+|++|+.+|+.|...|++|++ +|.|+......... +.+.
T Consensus 244 ~~R~~~~--~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV-------------~e~dp~~a~~A~~~--------G~~~ 300 (476)
T PTZ00075 244 IFRATDV--MIAGKTVVVCGYGDVGKGCAQALRGFGARVVV-------------TEIDPICALQAAME--------GYQV 300 (476)
T ss_pred HHHhcCC--CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE-------------EeCCchhHHHHHhc--------Ccee
Confidence 3444453 58999999999999999999999999999887 44554443332221 2222
Q ss_pred cCC-CCccccceEEeeccc-cccccccccccccc-eEEEecCCC
Q psy1913 348 APT-DIMFDKVDILVPAAI-EKVIRKSNADKVQA-KIIVEAANG 388 (535)
Q Consensus 348 i~~-ell~~~~DILiPaA~-~~~It~~na~~i~A-kiIvEgAN~ 388 (535)
++- +++ ..+||+|.|+. .+.|+.+....++- -+|+..+-+
T Consensus 301 ~~leell-~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 301 VTLEDVV-ETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred ccHHHHH-hcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCC
Confidence 222 443 47999999976 46788888877764 355555554
No 36
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.96 E-value=0.0072 Score=62.63 Aligned_cols=95 Identities=19% Similarity=0.325 Sum_probs=69.0
Q ss_pred CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCC
Q psy1913 247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEIN 325 (535)
Q Consensus 247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLD 325 (535)
-.+.|..||...++ ..+. +++|++|+|.|-|+ ||.-+|.+|.++|+.|+. ++++ .
T Consensus 137 ~~PcTp~ai~~ll~----------~~~i--~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv-~~s~-------t---- 192 (286)
T PRK14175 137 FVPCTPLGIMEILK----------HADI--DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTI-LHSR-------S---- 192 (286)
T ss_pred CCCCcHHHHHHHHH----------HcCC--CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEE-EeCC-------c----
Confidence 36899999887766 3554 58999999999999 999999999999999875 2221 1
Q ss_pred HHHHHHHHHHcCCcccCCCCcccCCCCccccceEEeeccc-cccccccccccccceEEEecCCCC
Q psy1913 326 YKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAI-EKVIRKSNADKVQAKIIVEAANGP 389 (535)
Q Consensus 326 i~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~-~~~It~~na~~i~AkiIvEgAN~p 389 (535)
..|.+ ....+||+|-|.. .+.|+++.... ..+|+..+.++
T Consensus 193 -~~l~~---------------------~~~~ADIVIsAvg~p~~i~~~~vk~--gavVIDvGi~~ 233 (286)
T PRK14175 193 -KDMAS---------------------YLKDADVIVSAVGKPGLVTKDVVKE--GAVIIDVGNTP 233 (286)
T ss_pred -hhHHH---------------------HHhhCCEEEECCCCCcccCHHHcCC--CcEEEEcCCCc
Confidence 11111 2257899999987 55777765432 46788887766
No 37
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.92 E-value=0.0041 Score=64.46 Aligned_cols=106 Identities=20% Similarity=0.257 Sum_probs=66.9
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC--C--CC
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP--T--DI 352 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~--~--el 352 (535)
++.+++|.|.|+|.+|+.++..|...|++|+++ |-+.+.+.... ..| .+.+. . +.
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~-------------~r~~~~~~~~~-~~G-------~~~~~~~~l~~~ 207 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGANVTVG-------------ARKSAHLARIT-EMG-------LSPFHLSELAEE 207 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEE-------------ECCHHHHHHHH-HcC-------CeeecHHHHHHH
Confidence 478999999999999999999999999988772 34444443332 222 22221 1 22
Q ss_pred ccccceEEeecccccccccccccccc-ceEEEecCCCC-CCHHHHHHHHhCCceee
Q psy1913 353 MFDKVDILVPAAIEKVIRKSNADKVQ-AKIIVEAANGP-LTPAAHAMLLKKNVLII 406 (535)
Q Consensus 353 l~~~~DILiPaA~~~~It~~na~~i~-AkiIvEgAN~p-~T~eA~~iL~~rGI~vi 406 (535)
+ .++||+|-|+....++.+-...++ -.+|+.-|..| -|.- +.-+++||.++
T Consensus 208 l-~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd~--~~a~~~Gv~~~ 260 (296)
T PRK08306 208 V-GKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPGGTDF--EYAEKRGIKAL 260 (296)
T ss_pred h-CCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCCCcCe--eehhhCCeEEE
Confidence 2 379999998866666665544443 24666666655 2221 12356676664
No 38
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.81 E-value=0.00073 Score=59.83 Aligned_cols=88 Identities=14% Similarity=0.277 Sum_probs=53.9
Q ss_pred ccccHHHHHHHHHHHC----CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-ccceE
Q psy1913 287 GFGNVGFHAARYFRRG----RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-DKVDI 359 (535)
Q Consensus 287 GfGnVG~~~A~~L~e~----GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-~~~DI 359 (535)
|||+||+.+++.|.+. +.+|++|+|++ .+.+++- .... . +....++ +++. .++||
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~--------~~~~-~--------~~~~~~~~~~~~~~~~~dv 62 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDW--------AASF-P--------DEAFTTDLEELIDDPDIDV 62 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTH--------HHHH-T--------HSCEESSHHHHHTHTT-SE
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhh--------hhhc-c--------cccccCCHHHHhcCcCCCE
Confidence 8999999999999876 78999999999 6665441 0111 0 1222233 4444 57999
Q ss_pred EeeccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcc
Q psy1913 360 LVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVT 417 (535)
Q Consensus 360 LiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVi 417 (535)
+|.|+..+.+. +.-.-..++|+.|+ .+|.|...
T Consensus 63 vVE~t~~~~~~----------------------~~~~~~L~~G~~VV---t~nk~ala 95 (117)
T PF03447_consen 63 VVECTSSEAVA----------------------EYYEKALERGKHVV---TANKGALA 95 (117)
T ss_dssp EEE-SSCHHHH----------------------HHHHHHHHTTCEEE---ES-HHHHH
T ss_pred EEECCCchHHH----------------------HHHHHHHHCCCeEE---EECHHHhh
Confidence 99996443221 22233457999995 79998876
No 39
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.79 E-value=0.0032 Score=60.19 Aligned_cols=107 Identities=18% Similarity=0.216 Sum_probs=66.9
Q ss_pred CCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCcc
Q psy1913 276 PCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMF 354 (535)
Q Consensus 276 ~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~ 354 (535)
.++.|+||.|.|||++|+.+|+.|...|++|++ ||+.. ..-... ... +.+..+- +++
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~--------~d~~~-----~~~~~~-~~~-------~~~~~~l~ell- 89 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGMRVIG--------YDRSP-----KPEEGA-DEF-------GVEYVSLDELL- 89 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT-EEEE--------EESSC-----HHHHHH-HHT-------TEEESSHHHHH-
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCceeEE--------ecccC-----Chhhhc-ccc-------cceeeehhhhc-
Confidence 368999999999999999999999999999998 55554 111111 111 1111111 444
Q ss_pred ccceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q psy1913 355 DKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPAA-HAMLLKKNVL 404 (535)
Q Consensus 355 ~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~eA-~~iL~~rGI~ 404 (535)
..|||++-+.. .+.|+.+...+++ --+++.-|-+.+ ..+| .+.|++.-|.
T Consensus 90 ~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 90 AQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIA 147 (178)
T ss_dssp HH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred chhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCc
Confidence 36999998877 4566666666665 358888999985 4333 3456555443
No 40
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.66 E-value=0.0051 Score=66.62 Aligned_cols=91 Identities=21% Similarity=0.257 Sum_probs=61.4
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD 355 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~ 355 (535)
.+.|++|+|.|+|++|..+|+.+...|++|++ +|.|+....+.... | ...++. +.+ .
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV-------------~d~dp~r~~~A~~~-G-------~~v~~leeal-~ 249 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIV-------------TEVDPIRALEAAMD-G-------FRVMTMEEAA-K 249 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEE-------------EeCChhhHHHHHhc-C-------CEeCCHHHHH-h
Confidence 37899999999999999999999999999988 45666554433321 2 222222 333 4
Q ss_pred cceEEeeccc-ccccccccccccc-ceEEEecCCCC
Q psy1913 356 KVDILVPAAI-EKVIRKSNADKVQ-AKIIVEAANGP 389 (535)
Q Consensus 356 ~~DILiPaA~-~~~It~~na~~i~-AkiIvEgAN~p 389 (535)
.+||+|.|+. .+.|+.+....++ -.+|+-.+-.+
T Consensus 250 ~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 250 IGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred cCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 7899998875 4556665666665 24555555444
No 41
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=96.62 E-value=0.047 Score=55.78 Aligned_cols=189 Identities=13% Similarity=0.118 Sum_probs=100.9
Q ss_pred EEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccceE
Q psy1913 282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVDI 359 (535)
Q Consensus 282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~DI 359 (535)
+|.|.|+|++|..+|+.|.+.|.+|++ .|.+.+.+.+..+. | ....+. +++ .+||+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~-------------~dr~~~~~~~~~~~-g-------~~~~~~~~~~~-~~aDi 58 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHV-------------TTIGPEVADELLAA-G-------AVTAETARQVT-EQADV 58 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEE-------------EcCCHHHHHHHHHC-C-------CcccCCHHHHH-hcCCE
Confidence 488999999999999999999999886 33555555444332 2 111222 333 58999
Q ss_pred Eeeccccccccccc-------ccccc-ceEEEecCCCC--CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhcccc
Q psy1913 360 LVPAAIEKVIRKSN-------ADKVQ-AKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISH 429 (535)
Q Consensus 360 LiPaA~~~~It~~n-------a~~i~-AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~ 429 (535)
++-|.......... ...++ -++|+...+.. .+.+..+.|.++|+.++---+ .|+... . .+..-.
T Consensus 59 vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv--~g~~~~-a---~~g~l~ 132 (291)
T TIGR01505 59 IFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPV--SGGEIG-A---IEGTLS 132 (291)
T ss_pred EEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCC--CCCHHH-H---hcCCEE
Confidence 99997754222111 12222 36788766554 234566778899988764221 333211 1 111101
Q ss_pred ccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy1913 430 SSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNK 509 (535)
Q Consensus 430 ~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~ 509 (535)
+.-| . +++ ..+.+..+-+. ++..+-...+...... ..+++.-+...+..++.+...++++++
T Consensus 133 i~~g----g-~~~-~~~~~~~ll~~----lg~~~~~~g~~g~a~~------~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-- 194 (291)
T TIGR01505 133 IMVG----G-DQA-VFDRVKPLFEA----LGKNIVLVGGNGDGQT------CKVANQIIVALNIEAVSEALVFASKAG-- 194 (291)
T ss_pred EEec----C-CHH-HHHHHHHHHHH----hcCCeEEeCCCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcC--
Confidence 1111 1 222 11112221111 1211111111111111 126777777788888999999999985
Q ss_pred CCHHHHH
Q psy1913 510 LDLRNAA 516 (535)
Q Consensus 510 ~~lR~AA 516 (535)
+|..+..
T Consensus 195 id~~~~~ 201 (291)
T TIGR01505 195 VDPVRVR 201 (291)
T ss_pred CCHHHHH
Confidence 6766554
No 42
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.59 E-value=0.076 Score=57.63 Aligned_cols=199 Identities=13% Similarity=0.128 Sum_probs=111.3
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCC-------------CCcc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYP-------------GTKS 347 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~-------------~a~~ 347 (535)
++|+|.|.|.||..+|..|.+.|..|++ .|.|.+.+.... .|.+.-+. +...
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~-------------~D~~~~~v~~l~--~g~~~~~e~~l~~~l~~~~~~g~l~ 68 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIG-------------VDINQHAVDTIN--RGEIHIVEPDLDMVVKTAVEGGYLR 68 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEE-------------EeCCHHHHHHHH--CCCCCcCCCCHHHHHHHHhhcCcee
Confidence 6899999999999999999999999998 446666555432 12111000 0000
Q ss_pred cCCCCccccceEEeecccccccccc--------------ccccc--cceEEEecCCCC-CCHHHHHHHHhCC--------
Q psy1913 348 APTDIMFDKVDILVPAAIEKVIRKS--------------NADKV--QAKIIVEAANGP-LTPAAHAMLLKKN-------- 402 (535)
Q Consensus 348 i~~ell~~~~DILiPaA~~~~It~~--------------na~~i--~AkiIvEgAN~p-~T~eA~~iL~~rG-------- 402 (535)
.+ ... .+||+++-|..... +++ -++.+ .+-+|.+..-.| +|.+....|.+++
T Consensus 69 ~~-~~~-~~aDvvii~vptp~-~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~ 145 (415)
T PRK11064 69 AT-TTP-EPADAFLIAVPTPF-KGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQ 145 (415)
T ss_pred ee-ccc-ccCCEEEEEcCCCC-CCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCccccc
Confidence 00 111 27999998877531 111 11222 245777888787 5566666676654
Q ss_pred --------ceeeccccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHh
Q psy1913 403 --------VLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDR 474 (535)
Q Consensus 403 --------I~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 474 (535)
+.+.|.++. +|-...-+.... .+ --..+++ ..+.+..+.+.+. ...-...+...++.
T Consensus 146 ~g~~~~f~v~~~PE~~~--~G~~~~~~~~~~---~v-----vgG~~~~-~~~~~~~ly~~~~----~~~~~~~~~~~Ae~ 210 (415)
T PRK11064 146 AGEQADINIAYCPERVL--PGQVMVELIKND---RV-----IGGMTPV-CSARASELYKIFL----EGECVVTNSRTAEM 210 (415)
T ss_pred ccCCCCeEEEECCCccC--CCChhhhhcCCC---EE-----EEeCCHH-HHHHHHHHHHHhc----CCCeeeCCHHHHHH
Confidence 356676662 444333322221 11 1111222 2223333333221 11112233444555
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Q psy1913 475 ISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSA 520 (535)
Q Consensus 475 i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~a 520 (535)
++ ++..-+-.......+++..+|++.+ +|.....-..+
T Consensus 211 ~K------l~~N~~~a~~ia~~nE~~~lae~~G--iD~~~v~~~~~ 248 (415)
T PRK11064 211 CK------LTENSFRDVNIAFANELSLICADQG--INVWELIRLAN 248 (415)
T ss_pred HH------HHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHhc
Confidence 55 6777788888888999999999985 77766544333
No 43
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.55 E-value=0.027 Score=53.96 Aligned_cols=96 Identities=18% Similarity=0.236 Sum_probs=68.3
Q ss_pred CCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCC
Q psy1913 246 GRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEI 324 (535)
Q Consensus 246 gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dL 324 (535)
...++|++.++..++ ... .+++|++|.|.|.|. +|..+|++|.+.|++|+. ++++
T Consensus 22 ~~~p~~~~a~v~l~~----------~~~--~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v-~~r~----------- 77 (168)
T cd01080 22 GFIPCTPAGILELLK----------RYG--IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTV-CHSK----------- 77 (168)
T ss_pred CccCChHHHHHHHHH----------HcC--CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEE-EECC-----------
Confidence 557889888876665 222 358999999999998 588899999999998554 4332
Q ss_pred CHHHHHHHHHHcCCcccCCCCcccCCCCccccceEEeeccc-cccccccccccccceEEEecCCCC
Q psy1913 325 NYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAI-EKVIRKSNADKVQAKIIVEAANGP 389 (535)
Q Consensus 325 Di~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~-~~~It~~na~~i~AkiIvEgAN~p 389 (535)
.++|.+ .-.++||+|-|.. .+.|+.+..+. ..+|+..|..+
T Consensus 78 -~~~l~~---------------------~l~~aDiVIsat~~~~ii~~~~~~~--~~viIDla~pr 119 (168)
T cd01080 78 -TKNLKE---------------------HTKQADIVIVAVGKPGLVKGDMVKP--GAVVIDVGINR 119 (168)
T ss_pred -chhHHH---------------------HHhhCCEEEEcCCCCceecHHHccC--CeEEEEccCCC
Confidence 111211 1247899999987 36788776543 47888888766
No 44
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.55 E-value=0.0067 Score=62.58 Aligned_cols=192 Identities=16% Similarity=0.208 Sum_probs=108.7
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCcc--ccc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMF--DKV 357 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~--~~~ 357 (535)
++|.|.|+|+.|..+|+.|.+.|.+|++ .|.+.+.+.+..+. +. ..+ . +. ++.+ ..|
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~-------------~dr~~~~~~~l~~~-g~-~~~---~--s~~~~~~~~~~~ 60 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVG-------------YDHDQDAVKAMKED-RT-TGV---A--NLRELSQRLSAP 60 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHc-CC-ccc---C--CHHHHHhhcCCC
Confidence 3799999999999999999999999877 34666766665543 21 111 1 11 2221 368
Q ss_pred eEEeecccccccccccc----cccc-ceEEEecCCCC--CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccc
Q psy1913 358 DILVPAAIEKVIRKSNA----DKVQ-AKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHS 430 (535)
Q Consensus 358 DILiPaA~~~~It~~na----~~i~-AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~ 430 (535)
|+++-|.... ...+-+ +.++ -++|+...|.. .|.+..+.+.++|+.++- ..-+||+.. . .+ +.
T Consensus 61 dvIi~~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vd--a~vsGg~~~-a---~~---G~ 130 (298)
T TIGR00872 61 RVVWVMVPHG-IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLD--CGTSGGVWG-R---ER---GY 130 (298)
T ss_pred CEEEEEcCch-HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEe--cCCCCCHHH-H---hc---CC
Confidence 9998886654 333322 3332 37899999984 567777889999998763 223333321 0 11 11
Q ss_pred cccccccccchh---hHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy1913 431 SLGRMSFGYDKE---ISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSD 507 (535)
Q Consensus 431 ~~grl~~~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~ 507 (535)
.+ |-.. +++ ....+++.+-. +. . .-.+--..--+.-.++++..|...+..+|.+.+.++++.+
T Consensus 131 ~~--~~gG-~~~~~~~~~~~l~~~~~--------~~--~-~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g 196 (298)
T TIGR00872 131 CF--MIGG-DGEAFARAEPLFADVAP--------EE--Q-GYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQ 196 (298)
T ss_pred ee--eeCC-CHHHHHHHHHHHHHhcC--------cC--C-CEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 11 0001 222 11122222110 00 0 0000001111234568899999999999999999999875
Q ss_pred CCCCHHHHH
Q psy1913 508 NKLDLRNAA 516 (535)
Q Consensus 508 ~~~~lR~AA 516 (535)
.++|+.+-+
T Consensus 197 ~~ld~~~~~ 205 (298)
T TIGR00872 197 FDFDIPEVA 205 (298)
T ss_pred CCcCHHHHH
Confidence 446754433
No 45
>PLN02494 adenosylhomocysteinase
Probab=96.52 E-value=0.0044 Score=68.19 Aligned_cols=89 Identities=20% Similarity=0.332 Sum_probs=60.1
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD 355 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~ 355 (535)
.+.|++|+|.|+|.+|+.+|+.+...|++|++ +|.|.......... | ...++- +++ .
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV-------------~e~dp~r~~eA~~~-G-------~~vv~leEal-~ 308 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIV-------------TEIDPICALQALME-G-------YQVLTLEDVV-S 308 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEE-------------EeCCchhhHHHHhc-C-------CeeccHHHHH-h
Confidence 47899999999999999999999999999888 44555443333322 1 111221 333 3
Q ss_pred cceEEeeccc-cccccccccccccc-eEEEecCC
Q psy1913 356 KVDILVPAAI-EKVIRKSNADKVQA-KIIVEAAN 387 (535)
Q Consensus 356 ~~DILiPaA~-~~~It~~na~~i~A-kiIvEgAN 387 (535)
.+||+|-|+. .+.|+.+....++. -+++-.+-
T Consensus 309 ~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 309 EADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred hCCEEEECCCCccchHHHHHhcCCCCCEEEEcCC
Confidence 6899998776 45677877777764 24444444
No 46
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.48 E-value=0.13 Score=55.98 Aligned_cols=98 Identities=16% Similarity=0.330 Sum_probs=73.9
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCc--
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIM-- 353 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell-- 353 (535)
+|++++|.|.|.|-+|.-+|+.|.++|.+-|.|+.++ .+...++.++.| +..++- ++.
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT------------~erA~~La~~~~-------~~~~~l~el~~~ 235 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRT------------LERAEELAKKLG-------AEAVALEELLEA 235 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCC------------HHHHHHHHHHhC-------CeeecHHHHHHh
Confidence 4799999999999999999999999998888877653 455556666654 333322 332
Q ss_pred cccceEEeec--cccccccccccccccc----eEEEecCCCC-CCHH
Q psy1913 354 FDKVDILVPA--AIEKVIRKSNADKVQA----KIIVEAANGP-LTPA 393 (535)
Q Consensus 354 ~~~~DILiPa--A~~~~It~~na~~i~A----kiIvEgAN~p-~T~e 393 (535)
-.++||+|-| |...+|+.++....-. .+|++-||.+ +.|+
T Consensus 236 l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdie~~ 282 (414)
T COG0373 236 LAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDVEPE 282 (414)
T ss_pred hhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCCCcc
Confidence 3589999999 7799999988877633 2999999987 4444
No 47
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=96.48 E-value=0.063 Score=57.86 Aligned_cols=202 Identities=13% Similarity=0.153 Sum_probs=115.6
Q ss_pred EEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCccc--C------CCCcc-cCCC-
Q psy1913 282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKG--Y------PGTKS-APTD- 351 (535)
Q Consensus 282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~--~------~~a~~-i~~e- 351 (535)
+|+|.|.|.||..+|..|+. |..|++ .|+|.+.+.+..+..-.+.. . ..... .+.+
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~Vig-------------vD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~ 67 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVA-------------LDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDK 67 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEE-------------EECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecch
Confidence 69999999999999977774 999998 66888877766542111100 0 01111 1111
Q ss_pred -CccccceEEeecccccccccc-------cc-------ccc--cceEEEecCCCC-CCHHHHHHHHhCCceeeccccccc
Q psy1913 352 -IMFDKVDILVPAAIEKVIRKS-------NA-------DKV--QAKIIVEAANGP-LTPAAHAMLLKKNVLIIPDIFANA 413 (535)
Q Consensus 352 -ll~~~~DILiPaA~~~~It~~-------na-------~~i--~AkiIvEgAN~p-~T~eA~~iL~~rGI~viPD~laNa 413 (535)
-...+||++|-|..+.. +.+ .+ .++ ..-+|.+..=.| +|.+..+.+.++|+.+-|.++...
T Consensus 68 ~~~~~~ad~vii~Vpt~~-~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~~PE~l~~G 146 (388)
T PRK15057 68 NEAYRDADYVIIATPTDY-DPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFLREG 146 (388)
T ss_pred hhhhcCCCEEEEeCCCCC-ccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcEEECcccccCC
Confidence 12368999999987552 221 11 111 134555666666 667777788889999999987543
Q ss_pred cCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhh-hcchhhHHHhhcccchHHHHHHHHHHHH
Q psy1913 414 GGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIR-IQKSAMYEDRISNATEKDIVQSSLTHSM 492 (535)
Q Consensus 414 GGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~i~g~~e~d~V~~~L~~~m 492 (535)
=. ++-+.|...+--| -+++.....++.++..+ ++.... ...+...++.++ ++..-+-...
T Consensus 147 -~a----~~d~~~p~rvv~G-----~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~AE~~K------l~~N~~~a~~ 207 (388)
T PRK15057 147 -KA----LYDNLHPSRIVIG-----ERSERAERFAALLQEGA---IKQNIPTLFTDSTEAEAIK------LFANTYLAMR 207 (388)
T ss_pred -cc----cccccCCCEEEEE-----cCcHHHHHHHHHHHhhh---hcCCCceeeCCHHHHHHHH------HHHHHHHHHH
Confidence 22 1222222222111 12333333333332211 111111 123344455555 6777778888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhHH
Q psy1913 493 QRAGRDILEYAEKSDNKLDLRNAAYCS 519 (535)
Q Consensus 493 ~~a~~~v~~~a~~~~~~~~lR~AAy~~ 519 (535)
....+++..+|++.+ +|.....=.+
T Consensus 208 Ia~~NE~a~lae~~G--iD~~eV~~a~ 232 (388)
T PRK15057 208 VAYFNELDSYAESLG--LNTRQIIEGV 232 (388)
T ss_pred HHHHHHHHHHHHHhC--cCHHHHHHHh
Confidence 888999999999985 7876655443
No 48
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.41 E-value=0.013 Score=60.73 Aligned_cols=50 Identities=30% Similarity=0.347 Sum_probs=42.9
Q ss_pred CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEE
Q psy1913 247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVa 308 (535)
-.+.|.+||...++ ..+. +++|++|+|.|-++ ||.-+|.+|..+||.|..
T Consensus 143 ~~PcTp~av~~ll~----------~~~i--~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv 193 (287)
T PRK14176 143 LVPCTPHGVIRALE----------EYGV--DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSV 193 (287)
T ss_pred CCCCcHHHHHHHHH----------HcCC--CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEE
Confidence 36889999987766 4565 58999999999999 999999999999998865
No 49
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.36 E-value=0.051 Score=58.97 Aligned_cols=97 Identities=18% Similarity=0.333 Sum_probs=64.4
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCC-CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC--C--C
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGR-AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP--T--D 351 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~G-akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~--~--e 351 (535)
++.+++|.|.|+|.+|..+++.|...| .+|+. .+ -+.+...+..++.+. ..++ . +
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v-~~------------rs~~ra~~la~~~g~-------~~i~~~~l~~ 236 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILI-AN------------RTYERAEDLAKELGG-------EAVKFEDLEE 236 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEE-Ee------------CCHHHHHHHHHHcCC-------eEeeHHHHHH
Confidence 368999999999999999999999999 45555 32 444555555544331 1111 1 2
Q ss_pred CccccceEEeeccc--cccccccccccc-----cceEEEecCCCC-CCHHH
Q psy1913 352 IMFDKVDILVPAAI--EKVIRKSNADKV-----QAKIIVEAANGP-LTPAA 394 (535)
Q Consensus 352 ll~~~~DILiPaA~--~~~It~~na~~i-----~AkiIvEgAN~p-~T~eA 394 (535)
.+ ..+||+|-|+. ...|+.+..... +..+|+..|+.. +.|+.
T Consensus 237 ~l-~~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid~~v 286 (417)
T TIGR01035 237 YL-AEADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPRDVDPAV 286 (417)
T ss_pred HH-hhCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCChhh
Confidence 22 37999999964 566776665543 224899999644 66664
No 50
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.31 E-value=0.025 Score=56.50 Aligned_cols=118 Identities=17% Similarity=0.263 Sum_probs=77.6
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCe--EEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAK--CLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIM 353 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~Gak--VVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell 353 (535)
++++++|.|.|.|.+|..+|+.|.+.|++ -+.|.|++|-++.....+|.. ...++.+..+. . ... .+- +.+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~-~~~~la~~~~~-~---~~~-~~l~~~l 95 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNP-DKNEIAKETNP-E---KTG-GTLKEAL 95 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhH-HHHHHHHHhcc-C---ccc-CCHHHHH
Confidence 47999999999999999999999999998 888999999887655411321 11223333211 0 000 111 233
Q ss_pred cccceEEeecccccccccccccccc-ceEEEecCCCC-CCHHHHHHHHhCCc
Q psy1913 354 FDKVDILVPAAIEKVIRKSNADKVQ-AKIIVEAANGP-LTPAAHAMLLKKNV 403 (535)
Q Consensus 354 ~~~~DILiPaA~~~~It~~na~~i~-AkiIvEgAN~p-~T~eA~~iL~~rGI 403 (535)
.++||||=|+..+.++++....+. ..+|..-. +| .|+-..+. ++.|.
T Consensus 96 -~~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~ls-nP~~e~~~~~A-~~~ga 144 (226)
T cd05311 96 -KGADVFIGVSRPGVVKKEMIKKMAKDPIVFALA-NPVPEIWPEEA-KEAGA 144 (226)
T ss_pred -hcCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeC-CCCCcCCHHHH-HHcCC
Confidence 258999999998899987777663 35777766 56 34433333 44566
No 51
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.27 E-value=0.014 Score=61.39 Aligned_cols=90 Identities=20% Similarity=0.305 Sum_probs=59.4
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCC-CCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPD-KGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM 353 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp-~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell 353 (535)
.|.|+||-|.|||++|+.+|+.|...|.+|++ ||| .. -+. ..+.+...++. ++|
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm~v~~--------~d~~~~--~~~-------------~~~~~~~~~~~Ld~lL 195 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIG--------YDPYSP--RER-------------AGVDGVVGVDSLDELL 195 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCeEEE--------ECCCCc--hhh-------------hccccceecccHHHHH
Confidence 57899999999999999999999999999999 555 22 110 01112222233 333
Q ss_pred cccceEEeeccc-----ccccccccccccc-ceEEEecCCCCC
Q psy1913 354 FDKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL 390 (535)
Q Consensus 354 ~~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~ 390 (535)
..|||++-+.. .+.|+.+...++| --+++-.|=|++
T Consensus 196 -~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~v 237 (324)
T COG0111 196 -AEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGV 237 (324)
T ss_pred -hhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcce
Confidence 36777776654 4556666666664 127788888884
No 52
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.24 E-value=0.0074 Score=51.09 Aligned_cols=86 Identities=14% Similarity=0.229 Sum_probs=58.8
Q ss_pred EEEEEccccHHHHHHHHHHHCC---CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC--C-CCccc
Q psy1913 282 TYIVQGFGNVGFHAARYFRRGR---AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP--T-DIMFD 355 (535)
Q Consensus 282 ~VaIQGfGnVG~~~A~~L~e~G---akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~--~-ell~~ 355 (535)
||.|.|+||+|..+++-|.+.| .+|..++ +-+.+.+.+++++.+ ..... + +++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~------------~r~~~~~~~~~~~~~-------~~~~~~~~~~~~~- 60 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVS------------SRSPEKAAELAKEYG-------VQATADDNEEAAQ- 60 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEE------------ESSHHHHHHHHHHCT-------TEEESEEHHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeec------------cCcHHHHHHHHHhhc-------cccccCChHHhhc-
Confidence 6889999999999999999999 8888543 266788888877764 22222 2 4554
Q ss_pred cceEEeeccccccccccccccc----cceEEEecCCC
Q psy1913 356 KVDILVPAAIEKVIRKSNADKV----QAKIIVEAANG 388 (535)
Q Consensus 356 ~~DILiPaA~~~~It~~na~~i----~AkiIvEgAN~ 388 (535)
++||++.|.....+.+ -+..+ +-++|+.-+|+
T Consensus 61 ~advvilav~p~~~~~-v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 61 EADVVILAVKPQQLPE-VLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp HTSEEEE-S-GGGHHH-HHHHHHHHHTTSEEEEESTT
T ss_pred cCCEEEEEECHHHHHH-HHHHHhhccCCCEEEEeCCC
Confidence 8999999988776654 22222 45666666553
No 53
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.22 E-value=0.021 Score=59.20 Aligned_cols=50 Identities=24% Similarity=0.272 Sum_probs=42.9
Q ss_pred CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccH-HHHHHHHHHHCCCeEEE
Q psy1913 247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNV-GFHAARYFRRGRAKCLA 308 (535)
Q Consensus 247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnV-G~~~A~~L~e~GakVVa 308 (535)
-.+.|.+|+...++ ..|+ +++|++|+|.|.|++ |+-+|.+|.++|+.|+.
T Consensus 137 ~~PcTp~aii~lL~----------~~~i--~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~ 187 (285)
T PRK14189 137 FRPCTPYGVMKMLE----------SIGI--PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTI 187 (285)
T ss_pred CcCCCHHHHHHHHH----------HcCC--CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEE
Confidence 46899999876665 4566 589999999999888 99999999999999886
No 54
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.15 E-value=0.038 Score=59.50 Aligned_cols=106 Identities=19% Similarity=0.249 Sum_probs=66.9
Q ss_pred HHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC
Q psy1913 270 CEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP 349 (535)
Q Consensus 270 ~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~ 349 (535)
+..|. .+.|+||.|+|+|++|+.+|+.|...|.+|++ |||.. - . ..+ .....+
T Consensus 108 r~~g~--~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~--------~Dp~~--~---~------~~~------~~~~~~ 160 (381)
T PRK00257 108 EREGV--DLAERTYGVVGAGHVGGRLVRVLRGLGWKVLV--------CDPPR--Q---E------AEG------DGDFVS 160 (381)
T ss_pred cccCC--CcCcCEEEEECCCHHHHHHHHHHHHCCCEEEE--------ECCcc--c---c------ccc------CccccC
Confidence 34453 58999999999999999999999999999987 23321 0 0 000 001111
Q ss_pred C-CCccccceEEeeccc---------ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCc
Q psy1913 350 T-DIMFDKVDILVPAAI---------EKVIRKSNADKVQ-AKIIVEAANGPL-TPAA-HAMLLKKNV 403 (535)
Q Consensus 350 ~-ell~~~~DILiPaA~---------~~~It~~na~~i~-AkiIvEgAN~p~-T~eA-~~iL~~rGI 403 (535)
- +++. .|||++-+.. .+.|+.+....++ -.+++..+=|++ ..+| .+.|.++-+
T Consensus 161 l~ell~-~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i 226 (381)
T PRK00257 161 LERILE-ECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGED 226 (381)
T ss_pred HHHHHh-hCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCC
Confidence 1 3333 6888876554 2566666666665 368888888884 3333 355655543
No 55
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.12 E-value=0.017 Score=52.89 Aligned_cols=102 Identities=19% Similarity=0.281 Sum_probs=68.3
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCc--
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIM-- 353 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell-- 353 (535)
++++++|.|.|.|.+|+.++..|.+.|++=|.|..+ +.+.+.+..+..+.. ....++- ++.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nR------------t~~ra~~l~~~~~~~----~~~~~~~~~~~~~ 72 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNR------------TPERAEALAEEFGGV----NIEAIPLEDLEEA 72 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEES------------SHHHHHHHHHHHTGC----SEEEEEGGGHCHH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEEC------------CHHHHHHHHHHcCcc----ccceeeHHHHHHH
Confidence 579999999999999999999999999986655543 345666666554210 1111111 222
Q ss_pred cccceEEeecccc--ccccccccccccc--eEEEecCCCC-CCHHH
Q psy1913 354 FDKVDILVPAAIE--KVIRKSNADKVQA--KIIVEAANGP-LTPAA 394 (535)
Q Consensus 354 ~~~~DILiPaA~~--~~It~~na~~i~A--kiIvEgAN~p-~T~eA 394 (535)
-.++||+|-|+.. ..|+.+....... ++|++-|+-+ ++|+.
T Consensus 73 ~~~~DivI~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~~~v 118 (135)
T PF01488_consen 73 LQEADIVINATPSGMPIITEEMLKKASKKLRLVIDLAVPRDIDPEV 118 (135)
T ss_dssp HHTESEEEE-SSTTSTSSTHHHHTTTCHHCSEEEES-SS-SB-TTC
T ss_pred HhhCCeEEEecCCCCcccCHHHHHHHHhhhhceeccccCCCCChhh
Confidence 3589999999774 4778887777754 6999999754 56553
No 56
>PRK07574 formate dehydrogenase; Provisional
Probab=96.08 E-value=0.018 Score=62.03 Aligned_cols=106 Identities=14% Similarity=0.157 Sum_probs=71.2
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF 354 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~ 354 (535)
+|.|++|.|.|||++|+.+|+.|...|++|++ ||+.. .+.+.. ... +.+.... +++
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~--------~dr~~--~~~~~~----~~~-------g~~~~~~l~ell- 246 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHY--------TDRHR--LPEEVE----QEL-------GLTYHVSFDSLV- 246 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCCEEEE--------ECCCC--CchhhH----hhc-------CceecCCHHHHh-
Confidence 47899999999999999999999999999987 44443 322111 111 1222222 444
Q ss_pred ccceEEeeccc-----ccccccccccccc-ceEEEecCCCCCCH--HHHHHHHhCCce
Q psy1913 355 DKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPLTP--AAHAMLLKKNVL 404 (535)
Q Consensus 355 ~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~T~--eA~~iL~~rGI~ 404 (535)
..|||++-|.. .+.|+++....++ -.+++.-|-+++-. ...+.|++.-|.
T Consensus 247 ~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 247 SVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLA 304 (385)
T ss_pred hcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCcc
Confidence 57999998876 4556666666665 36888999998543 334567766553
No 57
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=96.08 E-value=0.017 Score=59.46 Aligned_cols=103 Identities=11% Similarity=0.150 Sum_probs=69.2
Q ss_pred EEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccceE
Q psy1913 282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVDI 359 (535)
Q Consensus 282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~DI 359 (535)
+|.|.|.|++|..+|+.|.+.|.+|++ .|.+.+.+.+..+. | ....+. ++ ..+||+
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v-------------~d~~~~~~~~~~~~-g-------~~~~~s~~~~-~~~aDv 60 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQV-------------FDVNPQAVDALVDK-G-------ATPAASPAQA-AAGAEF 60 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEE-------------EcCCHHHHHHHHHc-C-------CcccCCHHHH-HhcCCE
Confidence 799999999999999999999998876 34555666555443 1 222222 33 358999
Q ss_pred Eeecccccc-----ccccc--cccc-cceEEEecCCCC--CCHHHHHHHHhCCceee
Q psy1913 360 LVPAAIEKV-----IRKSN--ADKV-QAKIIVEAANGP--LTPAAHAMLLKKNVLII 406 (535)
Q Consensus 360 LiPaA~~~~-----It~~n--a~~i-~AkiIvEgAN~p--~T~eA~~iL~~rGI~vi 406 (535)
+|-|..... +...+ ...+ +-++|++-...+ .+.+..+.|.++|+.|+
T Consensus 61 Vi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~l 117 (296)
T PRK15461 61 VITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMM 117 (296)
T ss_pred EEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence 999877553 22211 2223 246777777765 35677788999998876
No 58
>PLN03139 formate dehydrogenase; Provisional
Probab=96.06 E-value=0.019 Score=61.98 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=69.0
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF 354 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~ 354 (535)
+|.|++|.|.|+|++|+.+|+.|...|++|++ ||+.. .+.+.. .+. +....+. +++
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~--------~d~~~--~~~~~~----~~~-------g~~~~~~l~ell- 253 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLY--------HDRLK--MDPELE----KET-------GAKFEEDLDAML- 253 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCCEEEE--------ECCCC--cchhhH----hhc-------CceecCCHHHHH-
Confidence 58999999999999999999999999999987 34443 332211 111 1222223 444
Q ss_pred ccceEEeeccc-----ccccccccccccc-ceEEEecCCCCCC-HH-HHHHHHhCCce
Q psy1913 355 DKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPLT-PA-AHAMLLKKNVL 404 (535)
Q Consensus 355 ~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~T-~e-A~~iL~~rGI~ 404 (535)
..|||++-|.. .+.|+.+....++ -.+++.-|=|++- .+ ..+.|++.-|.
T Consensus 254 ~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~ 311 (386)
T PLN03139 254 PKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIG 311 (386)
T ss_pred hhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCce
Confidence 46999998876 4455554445553 3688888888853 33 33566655553
No 59
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.04 E-value=0.024 Score=58.75 Aligned_cols=50 Identities=22% Similarity=0.203 Sum_probs=42.8
Q ss_pred CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEE
Q psy1913 247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVa 308 (535)
-.+.|..||+..++ ..++ +++|++|+|.|-++ ||.-+|.+|.++||.|+.
T Consensus 138 ~~PcTp~av~~ll~----------~~~i--~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv 188 (285)
T PRK10792 138 LRPCTPRGIMTLLE----------RYGI--DTYGLNAVVVGASNIVGRPMSLELLLAGCTVTV 188 (285)
T ss_pred CCCCCHHHHHHHHH----------HcCC--CCCCCEEEEECCCcccHHHHHHHHHHCCCeEEE
Confidence 35899999987776 4565 58999999999999 999999999999998765
No 60
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.02 E-value=0.019 Score=60.42 Aligned_cols=104 Identities=17% Similarity=0.206 Sum_probs=68.0
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD 355 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~ 355 (535)
+|.|++|.|.|+|++|+.+|+.|...|++|++ ||+.. + ... ....+ ....+. +++ .
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~--------~d~~~---~--~~~--~~~~~-------~~~~~l~ell-~ 203 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGMRILY--------YSRTR---K--PEA--EKELG-------AEYRPLEELL-R 203 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEE--------ECCCC---C--hhh--HHHcC-------CEecCHHHHH-h
Confidence 58999999999999999999999999999987 33332 1 110 11111 121122 444 4
Q ss_pred cceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHH-HHHHHHhCCc
Q psy1913 356 KVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPA-AHAMLLKKNV 403 (535)
Q Consensus 356 ~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~e-A~~iL~~rGI 403 (535)
.|||++-|.. .+.|+.+....++ -.+++.-|=+++ ..+ ..+.|.+.-|
T Consensus 204 ~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i 259 (333)
T PRK13243 204 ESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWI 259 (333)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCe
Confidence 7899999986 3456665556664 368888888884 433 3456666544
No 61
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.01 E-value=0.038 Score=57.35 Aligned_cols=50 Identities=20% Similarity=0.151 Sum_probs=42.8
Q ss_pred CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccc-cHHHHHHHHHHHCCCeEEE
Q psy1913 247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFG-NVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfG-nVG~~~A~~L~e~GakVVa 308 (535)
-.+.|..||..-++ ..++ +++|++|+|.|-| .||.-+|.+|.++||.|..
T Consensus 136 ~~PcTp~avi~lL~----------~~~i--~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv 186 (285)
T PRK14191 136 FVPATPMGVMRLLK----------HYHI--EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSV 186 (285)
T ss_pred CCCCcHHHHHHHHH----------HhCC--CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEE
Confidence 46899999876666 4565 5899999999999 9999999999999999865
No 62
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.00 E-value=0.14 Score=54.36 Aligned_cols=89 Identities=9% Similarity=0.182 Sum_probs=62.6
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCcccc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDK 356 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~ 356 (535)
++++++|.|.|.|.+|..+|+.|.+.|++-|.|+.++-.. ++.+.+. .+.+ + +..+
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-------~~~~~~~--------------~~~~--~-~~~~ 226 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-------LPYRTVV--------------REEL--S-FQDP 226 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-------cchhhhh--------------hhhh--h-cccC
Confidence 5899999999999999999999999998777777665311 1111100 0000 1 2357
Q ss_pred ceEEeec-----cccccccccccccccceEEEecCCCC
Q psy1913 357 VDILVPA-----AIEKVIRKSNADKVQAKIIVEAANGP 389 (535)
Q Consensus 357 ~DILiPa-----A~~~~It~~na~~i~AkiIvEgAN~p 389 (535)
+||+|-| +...+|+.+....+..|++++-|+..
T Consensus 227 ~DvVIs~t~~Tas~~p~i~~~~~~~~~~r~~iDLAvPR 264 (338)
T PRK00676 227 YDVIFFGSSESAYAFPHLSWESLADIPDRIVFDFNVPR 264 (338)
T ss_pred CCEEEEcCCcCCCCCceeeHHHHhhccCcEEEEecCCC
Confidence 8999964 66778887777666567999998855
No 63
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=95.88 E-value=0.018 Score=61.32 Aligned_cols=105 Identities=23% Similarity=0.310 Sum_probs=74.7
Q ss_pred CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHH
Q psy1913 248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYK 327 (535)
Q Consensus 248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~ 327 (535)
.--||.+.+-+|..+ .++ -+.||+++|.|||-||+..|..|.-.||+|+. +++|+=
T Consensus 188 rYGtgqS~~DgI~Ra---------Tn~--liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViV-------------tEvDPI 243 (420)
T COG0499 188 RYGTGQSLLDGILRA---------TNV--LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIV-------------TEVDPI 243 (420)
T ss_pred ccccchhHHHHHHhh---------hce--eecCceEEEecccccchHHHHHhhcCCCeEEE-------------EecCch
Confidence 345777777766633 222 37899999999999999999999999999998 888875
Q ss_pred HHHHHHHHcCCcccCCCCcccCCCCccccceEEeeccc-cccccccccccccceEEEe
Q psy1913 328 DLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAI-EKVIRKSNADKVQAKIIVE 384 (535)
Q Consensus 328 ~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~-~~~It~~na~~i~AkiIvE 384 (535)
..++..-+ +| +.++-+=-....||||-|+. -++|+.+....++=-.|+.
T Consensus 244 ~AleA~Md-----Gf---~V~~m~~Aa~~gDifiT~TGnkdVi~~eh~~~MkDgaIl~ 293 (420)
T COG0499 244 RALEAAMD-----GF---RVMTMEEAAKTGDIFVTATGNKDVIRKEHFEKMKDGAILA 293 (420)
T ss_pred HHHHHhhc-----Cc---EEEEhHHhhhcCCEEEEccCCcCccCHHHHHhccCCeEEe
Confidence 55444322 22 22221101235699999998 8999999999997655553
No 64
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=95.86 E-value=0.018 Score=63.49 Aligned_cols=197 Identities=11% Similarity=0.080 Sum_probs=109.9
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc--cc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF--DK 356 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~--~~ 356 (535)
.+|.|+|.|+.|..+|+.|.+.|.+|++ -|.+.+...++.+.... .++. ....+. ++.. .+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v-------------~dr~~~~~~~l~~~~~~-~g~~-i~~~~s~~e~v~~l~~ 66 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISV-------------YNRTYEKTEEFVKKAKE-GNTR-VKGYHTLEELVNSLKK 66 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEE-------------EeCCHHHHHHHHHhhhh-cCCc-ceecCCHHHHHhcCCC
Confidence 3799999999999999999999999887 44666776665543110 0110 111122 4443 26
Q ss_pred ceEEeeccccccccccc----ccccc-ceEEEecCCCC--CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhcccc
Q psy1913 357 VDILVPAAIEKVIRKSN----ADKVQ-AKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISH 429 (535)
Q Consensus 357 ~DILiPaA~~~~It~~n----a~~i~-AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~ 429 (535)
+|+++-|........+. ++.+. -++|+++.|.- .|.+-.+.|.++||.|+= .--+||.-- .+.=+ .
T Consensus 67 ~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fld--apVSGG~~g--A~~G~---~ 139 (470)
T PTZ00142 67 PRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLG--MGVSGGEEG--ARYGP---S 139 (470)
T ss_pred CCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEc--CCCCCCHHH--HhcCC---E
Confidence 89777775544333333 33343 48999999985 466667789999999872 233444321 11111 1
Q ss_pred ccccccccccchh---hHHHHHHhhhhhhhhhhhhh-hhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1913 430 SSLGRMSFGYDKE---ISDLLLSSIDTSLSDTFNKK-IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEK 505 (535)
Q Consensus 430 ~~~grl~~~~~~~---~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~ 505 (535)
+-.| . +++ +.+.+++.|..+.. +.. ..-.-+.-...++ ..|+..++..|-.++-+.++++++
T Consensus 140 lm~G----G-~~~a~~~~~piL~~ia~~~~---~~~~~~~~G~~GaGh~v------KmvhN~ie~~~m~~iaEa~~l~~~ 205 (470)
T PTZ00142 140 LMPG----G-NKEAYDHVKDILEKCSAKVG---DSPCVTYVGPGSSGHYV------KMVHNGIEYGDMQLISESYKLMKH 205 (470)
T ss_pred EEEe----C-CHHHHHHHHHHHHHHhhhcC---CCCeEEEECCCCHHHHH------HHHhHHHHHHHHHHHHHHHHHHHh
Confidence 1111 1 221 12222333221100 000 0000011112222 479999999999999999999984
Q ss_pred -cCCCCCHHHH
Q psy1913 506 -SDNKLDLRNA 515 (535)
Q Consensus 506 -~~~~~~lR~A 515 (535)
. ++|..+-
T Consensus 206 ~~--gl~~~~l 214 (470)
T PTZ00142 206 IL--GMSNEEL 214 (470)
T ss_pred hc--CCCHHHH
Confidence 5 3665543
No 65
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=95.77 E-value=0.03 Score=57.23 Aligned_cols=105 Identities=11% Similarity=0.168 Sum_probs=65.9
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccce
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVD 358 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~D 358 (535)
++|.|.|+|.+|..+|+.|.+.|.+|++ || .+.+.+.+..+. | ....+. +++ .+||
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~--------~d-----~~~~~~~~~~~~-g-------~~~~~~~~e~~-~~~d 60 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVV--------YD-----RNPEAVAEVIAA-G-------AETASTAKAVA-EQCD 60 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEE--------Ec-----CCHHHHHHHHHC-C-------CeecCCHHHHH-hcCC
Confidence 4799999999999999999999999876 33 444554444332 1 222222 333 4799
Q ss_pred EEeecccccccccc-------cccccc-ceEEEecCCCC--CCHHHHHHHHhCCceeec
Q psy1913 359 ILVPAAIEKVIRKS-------NADKVQ-AKIIVEAANGP--LTPAAHAMLLKKNVLIIP 407 (535)
Q Consensus 359 ILiPaA~~~~It~~-------na~~i~-AkiIvEgAN~p--~T~eA~~iL~~rGI~viP 407 (535)
+++-|......... -.+.++ -++|+...... ++.+..+.+.++|+.++.
T Consensus 61 ~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d 119 (296)
T PRK11559 61 VIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLD 119 (296)
T ss_pred EEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 99999764332111 122333 36788766554 234566678888987643
No 66
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.77 E-value=0.026 Score=58.18 Aligned_cols=104 Identities=12% Similarity=0.133 Sum_probs=67.4
Q ss_pred EEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-c-cc
Q psy1913 282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-D-KV 357 (535)
Q Consensus 282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-~-~~ 357 (535)
+|.|+|+|++|..+|+.|.+.|..|+. .|.+.+.+.+..+ .| ....+. ++.. . .|
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v-------------~dr~~~~~~~~~~-~g-------~~~~~s~~~~~~~~~~a 60 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVG-------------YDVNQEAVDVAGK-LG-------ITARHSLEELVSKLEAP 60 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEE-------------EECCHHHHHHHHH-CC-------CeecCCHHHHHHhCCCC
Confidence 699999999999999999999999876 3345555555433 22 222222 3432 2 37
Q ss_pred eEEeeccccccccccc----ccccc-ceEEEecCCC-C-CCHHHHHHHHhCCceee
Q psy1913 358 DILVPAAIEKVIRKSN----ADKVQ-AKIIVEAANG-P-LTPAAHAMLLKKNVLII 406 (535)
Q Consensus 358 DILiPaA~~~~It~~n----a~~i~-AkiIvEgAN~-p-~T~eA~~iL~~rGI~vi 406 (535)
|+++-|........+- .+.++ -++|++-++. | .+.+..+.|.++|+.|+
T Consensus 61 dvVi~~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~v 116 (299)
T PRK12490 61 RTIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYV 116 (299)
T ss_pred CEEEEEecCchHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEE
Confidence 8998887655222222 22232 3688888766 4 45666778899999876
No 67
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=95.76 E-value=0.03 Score=58.50 Aligned_cols=107 Identities=18% Similarity=0.288 Sum_probs=70.1
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD 355 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~ 355 (535)
+|.|+||.|.|||++|+.+|+.+...|++|++ ||+.+ -.. .. ++ +..+- +++ .
T Consensus 142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~--------~d~~~--~~~--------~~----~~---~~~~l~ell-~ 195 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVY--------YSTSG--KNK--------NE----EY---ERVSLEELL-K 195 (311)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhcCCEEEE--------ECCCc--ccc--------cc----Cc---eeecHHHHh-h
Confidence 58999999999999999999999999999998 34333 110 00 01 11111 444 3
Q ss_pred cceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHH-HHHHHHhCCceeeccc
Q psy1913 356 KVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPA-AHAMLLKKNVLIIPDI 409 (535)
Q Consensus 356 ~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~e-A~~iL~~rGI~viPD~ 409 (535)
.|||++-+.. .+.|+.+...+++ --+++.-|=|++ ..+ ..+.|++.-|...=|+
T Consensus 196 ~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~AaLDV 257 (311)
T PRK08410 196 TSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIYAGLDV 257 (311)
T ss_pred cCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeEEEEec
Confidence 6898888765 3456666666665 468888999995 333 3366766555433444
No 68
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=95.71 E-value=0.26 Score=55.67 Aligned_cols=177 Identities=12% Similarity=0.149 Sum_probs=119.2
Q ss_pred CCHHHHHHHHHHHHHHHhccCccCCCCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCch
Q psy1913 172 YNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESAT 251 (535)
Q Consensus 172 ~s~~Eler~~r~f~~~L~~~~~iGp~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aT 251 (535)
.+..|...+...|++++.. -+||..-|-=.|++..-. --+.+.|+.. .-|+-. --.-|
T Consensus 243 v~g~eY~~~~defv~av~~--~fGp~~~I~~EDf~~~~a--f~iL~ryr~~--------i~~FnD----------DiQGT 300 (581)
T PLN03129 243 LTGEEYDELVDEFMEAVKQ--RWGPKVLVQFEDFANKNA--FRLLQRYRTT--------HLCFND----------DIQGT 300 (581)
T ss_pred CchhhHHHhHHHHHHHHHH--HhCCccEEehhhcCCccH--HHHHHHhccC--------CCEecc----------ccchH
Confidence 4567778888999999886 688888788888886542 2355777421 112211 12445
Q ss_pred HHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHH-----CCC------eEEEEecCCceEeCCC
Q psy1913 252 GRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR-----GRA------KCLAIVEHDTAIVPDK 320 (535)
Q Consensus 252 g~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e-----~Ga------kVVaVsD~~G~iynp~ 320 (535)
|-=+..++.+++ +..|. .|+..+|+|.|.|..|..+|++|.+ .|. +=+-+.|++|-|++..
T Consensus 301 aaV~lAgll~A~------r~~g~--~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r 372 (581)
T PLN03129 301 AAVALAGLLAAL------RATGG--DLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSR 372 (581)
T ss_pred HHHHHHHHHHHH------HHhCC--chhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCC
Confidence 555555555444 34564 4899999999999999999999987 476 4557889999999877
Q ss_pred CCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc-cccceEEeeccc-cccccccccccc----cceEEEecCCC
Q psy1913 321 GTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM-FDKVDILVPAAI-EKVIRKSNADKV----QAKIIVEAANG 388 (535)
Q Consensus 321 G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell-~~~~DILiPaA~-~~~It~~na~~i----~AkiIvEgAN~ 388 (535)
..+|+.... .+.+.. ..... +.+ .+++||||=++. ++.+|++-+..+ .-.||---+|-
T Consensus 373 ~~~l~~~k~-~fa~~~---------~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 373 KDSLQPFKK-PFAHDH---------EPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred CccChHHHH-HHHhhc---------ccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 511432221 222221 11122 333 568999999996 799999988888 44788888885
No 69
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=95.70 E-value=0.034 Score=56.92 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=68.7
Q ss_pred CCCcEEEEEccccHHHHHHHHHHH--CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRR--GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM 353 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e--~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell 353 (535)
++..||.|.|+|.+|+..++.|.+ .+++|++|.|. +.+...+..++.+. ....+. +++
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr------------~~~~a~~~a~~~g~------~~~~~~~eell 65 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR------------DPQRHADFIWGLRR------PPPVVPLDQLA 65 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC------------CHHHHHHHHHhcCC------CcccCCHHHHh
Confidence 566899999999999999999986 48899987653 34555555444331 122333 555
Q ss_pred cccceEEeecccccccccccccc-cc--ceEEEecCCCC-CCHHHHHHHHhCCcee-ec
Q psy1913 354 FDKVDILVPAAIEKVIRKSNADK-VQ--AKIIVEAANGP-LTPAAHAMLLKKNVLI-IP 407 (535)
Q Consensus 354 ~~~~DILiPaA~~~~It~~na~~-i~--AkiIvEgAN~p-~T~eA~~iL~~rGI~v-iP 407 (535)
.++|+++-|+..... .+-+.. ++ ..++++..-.. ...+..+..+++|+.+ +|
T Consensus 66 -~~~D~Vvi~tp~~~h-~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~ 122 (271)
T PRK13302 66 -THADIVVEAAPASVL-RAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVP 122 (271)
T ss_pred -cCCCEEEECCCcHHH-HHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEc
Confidence 478999999976554 333322 22 35676632211 1234445567888765 55
No 70
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.65 E-value=0.01 Score=56.20 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=28.2
Q ss_pred CCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913 275 EPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 275 ~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa 308 (535)
..++...+|+|.|.|+||..+++.|...|++++.
T Consensus 15 ~~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~ 48 (168)
T PF01262_consen 15 PGGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVV 48 (168)
T ss_dssp TTEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEe
Confidence 3456678999999999999999999999999998
No 71
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=95.60 E-value=0.23 Score=51.32 Aligned_cols=187 Identities=16% Similarity=0.139 Sum_probs=103.0
Q ss_pred EEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccceE
Q psy1913 282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVDI 359 (535)
Q Consensus 282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~DI 359 (535)
+|.|+|.|++|..+|+.|.+.|..|+. .| .+.. ..+.. +. ++...+. ++ ...||+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v-~~------------~~~~-~~~~~-~~-------g~~~~~s~~~~-~~~adv 58 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHV-TT------------IGPV-ADELL-SL-------GAVSVETARQV-TEASDI 58 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEE-Ee------------CCHh-HHHHH-Hc-------CCeecCCHHHH-HhcCCE
Confidence 699999999999999999999998864 22 3332 22222 22 2222222 33 358899
Q ss_pred Eeeccccc-----cccccc--cccc-cceEEEecCCC-C-CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhcccc
Q psy1913 360 LVPAAIEK-----VIRKSN--ADKV-QAKIIVEAANG-P-LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISH 429 (535)
Q Consensus 360 LiPaA~~~-----~It~~n--a~~i-~AkiIvEgAN~-p-~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~ 429 (535)
++-|-... ++..++ +..+ .-++|++-... | ++.+..+.+.++|+.|+-- -=+||... .| +
T Consensus 59 Vi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vda--PVsGg~~~--a~--~---- 128 (292)
T PRK15059 59 IFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDA--PVSGGEIG--AR--E---- 128 (292)
T ss_pred EEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEe--cCCCCHHH--Hh--c----
Confidence 99886533 222221 2222 23677766544 3 4566778899999987753 23555531 11 1
Q ss_pred cccccccccc--chhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy1913 430 SSLGRMSFGY--DKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSD 507 (535)
Q Consensus 430 ~~~grl~~~~--~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~ 507 (535)
|.|...- +++ .++.+...|.. ++.++...-+......+ .+++.-|-..+..++.+...++++++
T Consensus 129 ---g~l~~~~gG~~~----~~~~~~p~l~~-~g~~~~~~G~~G~g~~~------Kl~~N~l~~~~~~a~~Ea~~la~~~G 194 (292)
T PRK15059 129 ---GTLSIMVGGDEA----VFERVKPLFEL-LGKNITLVGGNGDGQTC------KVANQIIVALNIEAVSEALLFASKAG 194 (292)
T ss_pred ---CcEEEEEcCCHH----HHHHHHHHHHH-HcCCcEEeCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2211111 222 12222222221 12211111112222222 36778888777888999999999985
Q ss_pred CCCCHHHHHh
Q psy1913 508 NKLDLRNAAY 517 (535)
Q Consensus 508 ~~~~lR~AAy 517 (535)
+|+.+..-
T Consensus 195 --ld~~~~~~ 202 (292)
T PRK15059 195 --ADPVRVRQ 202 (292)
T ss_pred --CCHHHHHH
Confidence 78776543
No 72
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=95.57 E-value=0.03 Score=57.07 Aligned_cols=105 Identities=16% Similarity=0.254 Sum_probs=65.0
Q ss_pred cEEEEEccccHHHHHHHHHHHC--CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcccc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRG--RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDK 356 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~--GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~ 356 (535)
++|.|.|+|++|...++.|.+. +..+++|.|. +.+...+..+..+ ...++. +++ .+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~------------~~~~a~~~a~~~~-------~~~~~~~~ell-~~ 61 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDR------------NLEKAENLASKTG-------AKACLSIDELV-ED 61 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECC------------CHHHHHHHHHhcC-------CeeECCHHHHh-cC
Confidence 4899999999999999998875 5788887764 3444444444322 222333 566 68
Q ss_pred ceEEeecccccccccccccc-cc--ceEEEecC----CCCCCHHHHHHHHhCCceee
Q psy1913 357 VDILVPAAIEKVIRKSNADK-VQ--AKIIVEAA----NGPLTPAAHAMLLKKNVLII 406 (535)
Q Consensus 357 ~DILiPaA~~~~It~~na~~-i~--AkiIvEgA----N~p~T~eA~~iL~~rGI~vi 406 (535)
+|+++.|+..... .+-+.. ++ ..+|++.. +-+...+..+..+++|+.+.
T Consensus 62 ~DvVvi~a~~~~~-~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~ 117 (265)
T PRK13304 62 VDLVVECASVNAV-EEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIY 117 (265)
T ss_pred CCEEEEcCChHHH-HHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEE
Confidence 9999999975554 333332 22 35666532 22223345556777886543
No 73
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=95.54 E-value=0.08 Score=57.42 Aligned_cols=122 Identities=14% Similarity=0.184 Sum_probs=85.0
Q ss_pred CchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCe--EEEEecCCceEeCCCCCCCCH
Q psy1913 249 SATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAK--CLAIVEHDTAIVPDKGTEINY 326 (535)
Q Consensus 249 ~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Gak--VVaVsD~~G~iynp~G~dLDi 326 (535)
.-||-=+..++.+++ +..|. +|+..+|++.|.|..|-.++++|...|.+ =|-+.|++|-+|+.. .|++.
T Consensus 176 qGTaiv~lA~llnal------k~~gk--~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r-~~~~~ 246 (432)
T COG0281 176 QGTAIVTLAALLNAL------KLTGK--KLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGR-EDLTM 246 (432)
T ss_pred cHHHHHHHHHHHHHH------HHhCC--CccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCC-ccccc
Confidence 345555555555443 45674 58999999999999999999999999986 677899999999766 23322
Q ss_pred H-HHHHHH-HHcCCcccCCCCcccCCCCccccceEEeeccccccccccccccccc-eEEEecCCC
Q psy1913 327 K-DLHTYK-ITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQA-KIIVEAANG 388 (535)
Q Consensus 327 ~-~L~~~~-~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~~~~It~~na~~i~A-kiIvEgAN~ 388 (535)
. ...++. +.++.. .. +.--..+||||=|+..+++|++-+.++.. .+|---||-
T Consensus 247 ~~~k~~~a~~~~~~~--------~~-~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~PiIfalaNP 302 (432)
T COG0281 247 NQKKYAKAIEDTGER--------TL-DLALAGADVLIGVSGVGAFTEEMVKEMAKHPIIFALANP 302 (432)
T ss_pred chHHHHHHHhhhccc--------cc-cccccCCCEEEEcCCCCCcCHHHHHHhccCCEEeecCCC
Confidence 2 222222 122211 00 12346899999999999999999888854 677777774
No 74
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=95.44 E-value=0.024 Score=62.48 Aligned_cols=193 Identities=11% Similarity=0.039 Sum_probs=107.3
Q ss_pred EEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc--ccce
Q psy1913 283 YIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF--DKVD 358 (535)
Q Consensus 283 VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~--~~~D 358 (535)
|.|.|+|+.|..+|+.|.+.|.+|++ .|.+.+.+.+..++.+.-.+ ....+. ++.. .+||
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~v-------------~drt~~~~~~l~~~~~~g~~---~~~~~s~~e~v~~l~~~d 65 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVSV-------------YNRTPEKTDEFLAEHAKGKK---IVGAYSIEEFVQSLERPR 65 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEEE-------------EeCCHHHHHHHHhhccCCCC---ceecCCHHHHHhhcCCCC
Confidence 78999999999999999999999887 44666777666654211000 111111 3332 3689
Q ss_pred EEeecccccccccccc----cccc-ceEEEecCCC-C-CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhcccccc
Q psy1913 359 ILVPAAIEKVIRKSNA----DKVQ-AKIIVEAANG-P-LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSS 431 (535)
Q Consensus 359 ILiPaA~~~~It~~na----~~i~-AkiIvEgAN~-p-~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~ 431 (535)
+++-|...+....+-+ +.++ -++|+++.|. | .|.+..+.|.++||.++- .--+||+.. .+.-+ .+-
T Consensus 66 vIil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvd--apVsGG~~g--A~~G~---~im 138 (467)
T TIGR00873 66 KIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVG--SGVSGGEEG--ARKGP---SIM 138 (467)
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEc--CCCCCCHHH--HhcCC---cCC
Confidence 8888866543333332 3332 4799999995 4 456666779999999873 233555521 11111 111
Q ss_pred ccccccccchh---hHHHHHHhhhhhhhhhhhhh-hhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHH-Hc
Q psy1913 432 LGRMSFGYDKE---ISDLLLSSIDTSLSDTFNKK-IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAE-KS 506 (535)
Q Consensus 432 ~grl~~~~~~~---~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~-~~ 506 (535)
.| . +++ +.+.+++.+.... .+.. .-..-+.-...++ ..|+..++..|..++-+.+.+++ +.
T Consensus 139 ~G----G-~~~a~~~~~p~L~~ia~~~---~~~~~~~~~G~~GsG~~v------KmvhN~i~~~~m~~~aEa~~ll~~~~ 204 (467)
T TIGR00873 139 PG----G-SAEAWPLVAPIFQKIAAKV---DGEPCCTWIGPDGAGHYV------KMVHNGIEYGDMQLICEAYDILKDGL 204 (467)
T ss_pred CC----C-CHHHHHHHHHHHHHHhhhc---CCCCceEEECCcCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 1 222 1222222222110 0000 0000111122233 37999999999999999999886 45
Q ss_pred CCCCCHHH
Q psy1913 507 DNKLDLRN 514 (535)
Q Consensus 507 ~~~~~lR~ 514 (535)
+ +|..+
T Consensus 205 g--~~~~~ 210 (467)
T TIGR00873 205 G--LSNEE 210 (467)
T ss_pred C--CCHHH
Confidence 4 66544
No 75
>PRK06436 glycerate dehydrogenase; Provisional
Probab=95.41 E-value=0.053 Score=56.60 Aligned_cols=101 Identities=19% Similarity=0.214 Sum_probs=65.4
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD 355 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~ 355 (535)
.|.|+||.|.|+|++|+.+|+.|...|++|++..-+. .+.| .. ....+. +++ .
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~----~~~~--~~-------------------~~~~~l~ell-~ 172 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSY----VNDG--IS-------------------SIYMEPEDIM-K 172 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC----cccC--cc-------------------cccCCHHHHH-h
Confidence 4789999999999999999999998999999843210 1112 10 000111 444 4
Q ss_pred cceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CH-HHHHHHHhCCc
Q psy1913 356 KVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TP-AAHAMLLKKNV 403 (535)
Q Consensus 356 ~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~-eA~~iL~~rGI 403 (535)
.||+++-|.. .+.|+.+....++ -.+++.-+=+++ .. +..+.|.++-+
T Consensus 173 ~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i 228 (303)
T PRK06436 173 KSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHND 228 (303)
T ss_pred hCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCc
Confidence 7899998876 3455555555554 367888888874 33 34566776544
No 76
>PRK06932 glycerate dehydrogenase; Provisional
Probab=95.40 E-value=0.1 Score=54.55 Aligned_cols=101 Identities=19% Similarity=0.262 Sum_probs=66.0
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD 355 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~ 355 (535)
+|.|+||.|.|||++|+.+|+.+...|++|+++. +.. -+ .. . ....+- +++ .
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~--------~~~--~~--~~------~--------~~~~~l~ell-~ 196 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAE--------HKG--AS--VC------R--------EGYTPFEEVL-K 196 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEEC--------CCc--cc--cc------c--------cccCCHHHHH-H
Confidence 5899999999999999999999999999999842 211 00 00 0 000111 344 3
Q ss_pred cceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q psy1913 356 KVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPAA-HAMLLKKNVL 404 (535)
Q Consensus 356 ~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~eA-~~iL~~rGI~ 404 (535)
.|||++-|.. .+.|+.+...+++ --+++.-|=|++ ..+| .+.|.+.-|.
T Consensus 197 ~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~ 253 (314)
T PRK06932 197 QADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIA 253 (314)
T ss_pred hCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCcc
Confidence 6899888765 4455566666664 468888888884 4333 3566665553
No 77
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.39 E-value=0.089 Score=54.47 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=42.9
Q ss_pred CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccc-cHHHHHHHHHHHCCCeEEE
Q psy1913 247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFG-NVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfG-nVG~~~A~~L~e~GakVVa 308 (535)
-.+.|..||..-++ ..+. +++|++|+|.|.+ .||+.+|.+|...|+.|..
T Consensus 131 ~~PcTp~av~~ll~----------~~~i--~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv 181 (279)
T PRK14178 131 FAPCTPNGIMTLLH----------EYKI--SIAGKRAVVVGRSIDVGRPMAALLLNADATVTI 181 (279)
T ss_pred CCCCCHHHHHHHHH----------HcCC--CCCCCEEEEECCCccccHHHHHHHHhCCCeeEE
Confidence 46899999886666 4565 5899999999998 9999999999999998876
No 78
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.36 E-value=0.12 Score=49.60 Aligned_cols=123 Identities=17% Similarity=0.149 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHH
Q psy1913 251 TGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDL 329 (535)
Q Consensus 251 Tg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L 329 (535)
|+.-.+..++ ..++++|. ++++++++|.|. |.+|+.+++.|.+.|++|+.++ -+.+.+
T Consensus 7 ta~aav~~~~------~~l~~~~~--~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~-------------R~~~~~ 65 (194)
T cd01078 7 TAAAAVAAAG------KALELMGK--DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVG-------------RDLERA 65 (194)
T ss_pred HHHHHHHHHH------HHHHHhCc--CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEc-------------CCHHHH
Confidence 4444444444 33445564 579999999996 9999999999999999888743 334444
Q ss_pred HHHHHHcCCcccCCCCcc--cCC--CCc--cccceEEeeccccccccccccc-ccc-ceEEEecCCCC-CCHHHH
Q psy1913 330 HTYKITKGTIKGYPGTKS--APT--DIM--FDKVDILVPAAIEKVIRKSNAD-KVQ-AKIIVEAANGP-LTPAAH 395 (535)
Q Consensus 330 ~~~~~~~g~v~~~~~a~~--i~~--ell--~~~~DILiPaA~~~~It~~na~-~i~-AkiIvEgAN~p-~T~eA~ 395 (535)
.+..+......+. .... ..+ ++. -.+||++|-|+..+..+..... ..+ .++|++-+..| ++++..
T Consensus 66 ~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~~~~~ 139 (194)
T cd01078 66 QKAADSLRARFGE-GVGAVETSDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVPPVGIEGI 139 (194)
T ss_pred HHHHHHHHhhcCC-cEEEeeCCCHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEEEccCCCCCCcccc
Confidence 4443321100000 0001 111 111 1479999998876553222222 222 36888876666 666543
No 79
>PRK13529 malate dehydrogenase; Provisional
Probab=95.33 E-value=0.5 Score=53.32 Aligned_cols=185 Identities=12% Similarity=0.163 Sum_probs=119.4
Q ss_pred CCHHHHHHHHHHHHHHHhccCccCCCCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCch
Q psy1913 172 YNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESAT 251 (535)
Q Consensus 172 ~s~~Eler~~r~f~~~L~~~~~iGp~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aT 251 (535)
.+..|...+...|+.++.. .. |..-|==.|++..- ---|.+.|+... -|+-. --.-|
T Consensus 218 ~~g~eY~~f~defv~av~~--~~-P~~~I~~EDf~~~~--af~iL~ryr~~i--------~~FnD----------DiQGT 274 (563)
T PRK13529 218 IRGEEYDEFVDEFVQAVKR--RF-PNALLQFEDFAQKN--ARRILERYRDEI--------CTFND----------DIQGT 274 (563)
T ss_pred CchHHHHHHHHHHHHHHHH--hC-CCeEEehhhcCCch--HHHHHHHhccCC--------Ceecc----------ccchH
Confidence 4567788889999998886 33 66666677887643 234567775411 12211 12345
Q ss_pred HHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHH----CCC------eEEEEecCCceEeCCCC
Q psy1913 252 GRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR----GRA------KCLAIVEHDTAIVPDKG 321 (535)
Q Consensus 252 g~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e----~Ga------kVVaVsD~~G~iynp~G 321 (535)
|-=+..++.+++ +..|. .|+..||+|.|.|..|..+|++|.+ .|. +=+-+.|++|-|+...+
T Consensus 275 aaV~LAgll~A~------r~~g~--~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~ 346 (563)
T PRK13529 275 GAVTLAGLLAAL------KITGE--PLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMP 346 (563)
T ss_pred HHHHHHHHHHHH------HHhCC--ChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCC
Confidence 555555555444 34564 4899999999999999999999986 687 45678999999998875
Q ss_pred CCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc-cccceEEeeccc-cccccccccccccc----eEEEecCCCC
Q psy1913 322 TEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM-FDKVDILVPAAI-EKVIRKSNADKVQA----KIIVEAANGP 389 (535)
Q Consensus 322 ~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell-~~~~DILiPaA~-~~~It~~na~~i~A----kiIvEgAN~p 389 (535)
||+.... .+.+....+.+++....... +++ .++.||||=++. ++++|++-+..+.. .||---+|--
T Consensus 347 -~l~~~k~-~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 420 (563)
T PRK13529 347 -DLLDFQK-PYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNPT 420 (563)
T ss_pred -cchHHHH-HHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCcC
Confidence 4433222 23322222222211111112 333 568899999998 79999998888853 6888888743
No 80
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.17 E-value=0.011 Score=53.33 Aligned_cols=91 Identities=11% Similarity=0.185 Sum_probs=54.3
Q ss_pred cEEEEEcc-ccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcccc
Q psy1913 281 KTYIVQGF-GNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDK 356 (535)
Q Consensus 281 ~~VaIQGf-GnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~ 356 (535)
.+|+|.|+ |++|+.+++.+.+ .+..++++.|++.. +-.| -|+.++.... . .+....+. +++..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~--~~~g--~d~g~~~~~~-~-------~~~~v~~~l~~~~~~- 67 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPS--AKVG--KDVGELAGIG-P-------LGVPVTDDLEELLEE- 67 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTS--TTTT--SBCHHHCTSS-T--------SSBEBS-HHHHTTH-
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCc--cccc--chhhhhhCcC-C-------cccccchhHHHhccc-
Confidence 37999999 9999999999998 89999999998762 1235 4444432211 0 02222233 45555
Q ss_pred ceEEeeccccccccccccccc---cceEEEec
Q psy1913 357 VDILVPAAIEKVIRKSNADKV---QAKIIVEA 385 (535)
Q Consensus 357 ~DILiPaA~~~~It~~na~~i---~AkiIvEg 385 (535)
|||+|-++....+. +|+... +.++|++-
T Consensus 68 ~DVvIDfT~p~~~~-~~~~~~~~~g~~~ViGT 98 (124)
T PF01113_consen 68 ADVVIDFTNPDAVY-DNLEYALKHGVPLVIGT 98 (124)
T ss_dssp -SEEEEES-HHHHH-HHHHHHHHHT-EEEEE-
T ss_pred CCEEEEcCChHHhH-HHHHHHHhCCCCEEEEC
Confidence 99999999544332 233222 34666543
No 81
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=95.15 E-value=0.33 Score=49.74 Aligned_cols=185 Identities=13% Similarity=0.120 Sum_probs=98.4
Q ss_pred EEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccceEEee
Q psy1913 285 VQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVDILVP 362 (535)
Q Consensus 285 IQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~DILiP 362 (535)
|.|+|++|..+|+.|.+.|.+|+. .|.+.+.+.+..+. | ....+. ++ ..+|||+|-
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v-------------~dr~~~~~~~l~~~-g-------~~~~~s~~~~-~~~advVil 58 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRV-------------FDLFPDAVEEAVAA-G-------AQAAASPAEA-AEGADRVIT 58 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEE-------------EeCCHHHHHHHHHc-C-------CeecCCHHHH-HhcCCEEEE
Confidence 469999999999999999999876 33555555554432 2 221222 33 347899998
Q ss_pred ccccccccc-------ccccccc-ceEEEecCCCC--CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccccc
Q psy1913 363 AAIEKVIRK-------SNADKVQ-AKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSL 432 (535)
Q Consensus 363 aA~~~~It~-------~na~~i~-AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~ 432 (535)
|........ .-++.++ -++|+...... ++.+..+.+.++|+.|+--- =+||+..- + -..+ .+..
T Consensus 59 ~vp~~~~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaP--v~Gg~~~a--~-~g~l-~~~~ 132 (288)
T TIGR01692 59 MLPAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAP--VSGGVGGA--R-AGTL-TFMV 132 (288)
T ss_pred eCCChHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECC--CCCCHHHH--h-hCcE-EEEE
Confidence 877533211 1122333 25666666443 34566678889999886432 24665321 1 1111 1101
Q ss_pred cccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Q psy1913 433 GRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDL 512 (535)
Q Consensus 433 grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~l 512 (535)
| . +++.. +.+...|.. ++.++....+...... ..+++.-+......++.+...++++++ +|.
T Consensus 133 g----g-~~~~~----~~~~~~l~~-~g~~~~~~g~~g~g~~------~Kl~~n~~~~~~~~~~~Ea~~la~~~G--ld~ 194 (288)
T TIGR01692 133 G----G-VAEEF----AAAEPVLGP-MGRNIVHCGDHGAGQA------AKICNNMLLGISMIGTAEAMALGEKLG--LDP 194 (288)
T ss_pred C----C-CHHHH----HHHHHHHHH-hcCCeEeeCCCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcC--CCH
Confidence 1 1 22111 111111111 1221111111122222 225666777777778889999999985 676
Q ss_pred HHH
Q psy1913 513 RNA 515 (535)
Q Consensus 513 R~A 515 (535)
.+.
T Consensus 195 ~~~ 197 (288)
T TIGR01692 195 KVL 197 (288)
T ss_pred HHH
Confidence 553
No 82
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=95.15 E-value=0.048 Score=56.60 Aligned_cols=106 Identities=13% Similarity=0.173 Sum_probs=71.2
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceE
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDI 359 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DI 359 (535)
.+|+++|+|+.|+..|..|.+.|+.|.. .|.++++..+..... |++..+. .=....|||
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v-------------~~r~~~ka~~~~~~~-------Ga~~a~s~~eaa~~aDv 60 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTV-------------YNRTPEKAAELLAAA-------GATVAASPAEAAAEADV 60 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEE-------------EeCChhhhhHHHHHc-------CCcccCCHHHHHHhCCE
Confidence 4799999999999999999999999988 667777744444443 2333332 123468899
Q ss_pred Eeeccc-----cccccccc--cccc-cceEEEecCC-CC-CCHHHHHHHHhCCceee
Q psy1913 360 LVPAAI-----EKVIRKSN--ADKV-QAKIIVEAAN-GP-LTPAAHAMLLKKNVLII 406 (535)
Q Consensus 360 LiPaA~-----~~~It~~n--a~~i-~AkiIvEgAN-~p-~T~eA~~iL~~rGI~vi 406 (535)
+|-|-. ..++.+++ +..+ +-++|+.-.. .| .+.+..+.++++|+.++
T Consensus 61 Vitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~l 117 (286)
T COG2084 61 VITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFL 117 (286)
T ss_pred EEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEE
Confidence 988743 44454422 2222 2355555544 45 45788888999999887
No 83
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.13 E-value=0.17 Score=52.35 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=42.2
Q ss_pred CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEEEecC
Q psy1913 248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLAIVEH 312 (535)
Q Consensus 248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVaVsD~ 312 (535)
.+.|-+|+...++ ..+. +++|++|+|.|.|+ ||+.++.+|.++|+. |.|+++
T Consensus 139 ~p~T~~gii~~L~----------~~~i--~l~Gk~vvViG~gg~vGkpia~~L~~~gat-Vtv~~~ 191 (283)
T PRK14192 139 GSATPAGIMRLLK----------AYNI--ELAGKHAVVVGRSAILGKPMAMMLLNANAT-VTICHS 191 (283)
T ss_pred cCCcHHHHHHHHH----------HcCC--CCCCCEEEEECCcHHHHHHHHHHHHhCCCE-EEEEeC
Confidence 5788899887776 3454 57999999999998 999999999999994 555543
No 84
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=95.12 E-value=0.054 Score=58.30 Aligned_cols=155 Identities=17% Similarity=0.212 Sum_probs=90.8
Q ss_pred HHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC
Q psy1913 270 CEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP 349 (535)
Q Consensus 270 ~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~ 349 (535)
+..|. +|.|+||.|.|+|+||+.+|+.|...|.+|++ |||.. -+ .+. .....+
T Consensus 108 r~~g~--~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~--------~dp~~--~~----------~~~-----~~~~~~ 160 (378)
T PRK15438 108 ERDGF--SLHDRTVGIVGVGNVGRRLQARLEALGIKTLL--------CDPPR--AD----------RGD-----EGDFRS 160 (378)
T ss_pred ccCCC--CcCCCEEEEECcCHHHHHHHHHHHHCCCEEEE--------ECCcc--cc----------ccc-----ccccCC
Confidence 34454 58999999999999999999999999999998 23321 00 000 001111
Q ss_pred C-CCccccceEEeeccc---------ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce-eeccccccccC
Q psy1913 350 T-DIMFDKVDILVPAAI---------EKVIRKSNADKVQ-AKIIVEAANGPL-TPAA-HAMLLKKNVL-IIPDIFANAGG 415 (535)
Q Consensus 350 ~-ell~~~~DILiPaA~---------~~~It~~na~~i~-AkiIvEgAN~p~-T~eA-~~iL~~rGI~-viPD~laNaGG 415 (535)
- +++ ..|||++-+.. .+.|+.+....++ -.+++..+=|++ ..+| .+.|++.-+. .+=|+.-+==
T Consensus 161 L~ell-~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP- 238 (378)
T PRK15438 161 LDELV-QEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEP- 238 (378)
T ss_pred HHHHH-hhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCC-
Confidence 1 444 36899985543 2456677767775 479999999994 4444 3567665442 4445444322
Q ss_pred cchhhHhhhhcc----ccccccccccccchhhHHHHHHhhhhhhhhhhhh
Q psy1913 416 VTVSYFEWLKNI----SHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNK 461 (535)
Q Consensus 416 VivSy~Ew~qn~----~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~ 461 (535)
..-+ +++.+. .|+.+ ++.+........+.+.+.+.++.
T Consensus 239 ~~~~--~Ll~~~~i~TPHiAg------~s~e~~~~~~~~~~~~l~~~~~~ 280 (378)
T PRK15438 239 ELNV--ELLKKVDIGTPHIAG------YTLEGKARGTTQVFEAYSKFIGH 280 (378)
T ss_pred CCch--hhhhcCCEECCccCc------CcHHHHHHHHHHHHHHHHHHHcC
Confidence 1111 223332 45443 45555444445555555555554
No 85
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.09 E-value=0.13 Score=54.57 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=32.6
Q ss_pred HHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913 270 CEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 270 ~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs 310 (535)
++.++. .|.+|+|.|+|-+|..+.++....|++|+|++
T Consensus 160 k~~~~~---pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~ 197 (339)
T COG1064 160 KKANVK---PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAIT 197 (339)
T ss_pred hhcCCC---CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEe
Confidence 345554 49999999999999999999999999999955
No 86
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=95.09 E-value=0.3 Score=56.99 Aligned_cols=125 Identities=17% Similarity=0.192 Sum_probs=86.3
Q ss_pred CchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCe--EEEEecCCceEeCCCCCCCCH
Q psy1913 249 SATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAK--CLAIVEHDTAIVPDKGTEINY 326 (535)
Q Consensus 249 ~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Gak--VVaVsD~~G~iynp~G~dLDi 326 (535)
.-||-=+..++.+++ +..|. +++..||+|.|.|..|..+|++|...|.+ =+-+.|++|.|+.....+++.
T Consensus 162 ~GTa~v~lA~l~na~------~~~~~--~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~ 233 (752)
T PRK07232 162 HGTAIISAAALLNAL------ELVGK--KIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDE 233 (752)
T ss_pred chHHHHHHHHHHHHH------HHhCC--ChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccH
Confidence 345555555555443 45564 48999999999999999999999999983 557899999999876312543
Q ss_pred HHHHHHHHHcCCcccCCCCcccCC--CCccccceEEeecccccccccccccccc-ceEEEecCCCC--CCHH
Q psy1913 327 KDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVDILVPAAIEKVIRKSNADKVQ-AKIIVEAANGP--LTPA 393 (535)
Q Consensus 327 ~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~DILiPaA~~~~It~~na~~i~-AkiIvEgAN~p--~T~e 393 (535)
... .+.+.+ .... +.+.. +||||=++.++.+|++-+..+. -.||---||-- +|||
T Consensus 234 ~k~-~~a~~~----------~~~~l~~~i~~-~~v~iG~s~~g~~~~~~v~~M~~~piifalsNP~~E~~p~ 293 (752)
T PRK07232 234 WKA-AYAVDT----------DARTLAEAIEG-ADVFLGLSAAGVLTPEMVKSMADNPIIFALANPDPEITPE 293 (752)
T ss_pred HHH-HHhccC----------CCCCHHHHHcC-CCEEEEcCCCCCCCHHHHHHhccCCEEEecCCCCccCCHH
Confidence 332 122111 1112 44444 8999999999999999888884 36777777753 4554
No 87
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.08 E-value=0.051 Score=55.13 Aligned_cols=109 Identities=14% Similarity=0.154 Sum_probs=67.3
Q ss_pred cEEEEEcc-ccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcccc
Q psy1913 281 KTYIVQGF-GNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDK 356 (535)
Q Consensus 281 ~~VaIQGf-GnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~ 356 (535)
.+|+|.|+ |.+|+..++.+.+ .+.++++++|.+.. . .. .. ... +....++ +++. +
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~-----~--~~-----~~-~~~-------~i~~~~dl~~ll~-~ 60 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGS-----P--LV-----GQ-GAL-------GVAITDDLEAVLA-D 60 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc-----c--cc-----cc-CCC-------CccccCCHHHhcc-C
Confidence 58999998 9999999999886 57999999986521 1 10 00 111 1112233 4554 7
Q ss_pred ceEEeeccccccccccccccc---cceEEEecCCCCCCHHHHHHH---HhCCceeecccccc
Q psy1913 357 VDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAAHAML---LKKNVLIIPDIFAN 412 (535)
Q Consensus 357 ~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA~~iL---~~rGI~viPD~laN 412 (535)
+|++|-|+.++.. .+++... ...+|++ --+-...+++++. ...++++.|.+..-
T Consensus 61 ~DvVid~t~p~~~-~~~~~~al~~G~~vvig-ttG~s~~~~~~l~~aa~~~~v~~s~n~s~g 120 (257)
T PRK00048 61 ADVLIDFTTPEAT-LENLEFALEHGKPLVIG-TTGFTEEQLAELEEAAKKIPVVIAPNFSIG 120 (257)
T ss_pred CCEEEECCCHHHH-HHHHHHHHHcCCCEEEE-CCCCCHHHHHHHHHHhcCCCEEEECcchHH
Confidence 9999999976654 5555444 3567777 2233334454443 33567788876543
No 88
>PRK06487 glycerate dehydrogenase; Provisional
Probab=95.07 E-value=0.11 Score=54.42 Aligned_cols=99 Identities=20% Similarity=0.233 Sum_probs=65.3
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD 355 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~ 355 (535)
+|.|+||.|.|||++|+.+|+.|...|++|++.. +.+ -. . .....+- +++ .
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~--------~~~--~~-~----------------~~~~~~l~ell-~ 196 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQ--------LPG--RP-A----------------RPDRLPLDELL-P 196 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEEC--------CCC--Cc-c----------------cccccCHHHHH-H
Confidence 5899999999999999999999999999999843 222 00 0 0001111 333 3
Q ss_pred cceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCc
Q psy1913 356 KVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPAA-HAMLLKKNV 403 (535)
Q Consensus 356 ~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~eA-~~iL~~rGI 403 (535)
.|||++-+.. .+.|+.+...+++ --+++.-|=|++ ..+| .+.|++.-|
T Consensus 197 ~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i 252 (317)
T PRK06487 197 QVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHL 252 (317)
T ss_pred hCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 6788887765 4456666666665 368888888884 3333 356665544
No 89
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.03 E-value=0.089 Score=50.19 Aligned_cols=51 Identities=25% Similarity=0.229 Sum_probs=37.7
Q ss_pred CCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEE
Q psy1913 246 GRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 246 gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVa 308 (535)
+-.+.|..|+...++ ..+. +++||+|+|.|-++ ||.-++.+|.++|+.|..
T Consensus 14 ~~~PcTp~aii~lL~----------~~~~--~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~ 65 (160)
T PF02882_consen 14 GFVPCTPLAIIELLE----------YYGI--DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTI 65 (160)
T ss_dssp SS--HHHHHHHHHHH----------HTT---STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEE
T ss_pred CCcCCCHHHHHHHHH----------hcCC--CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEe
Confidence 346889999887666 3554 48999999999875 999999999999999876
No 90
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=95.02 E-value=0.062 Score=56.25 Aligned_cols=103 Identities=14% Similarity=0.150 Sum_probs=64.6
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF 354 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~ 354 (535)
.+.|+||.|.|+|++|+.+|+.|...|++|+++.-..-. ..| ++ .+. .... +++
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~---~~~--~~---------------~~~---~~~~l~e~l- 188 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKS---WPG--VQ---------------SFA---GREELSAFL- 188 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC---CCC--ce---------------eec---ccccHHHHH-
Confidence 478999999999999999999999999999885321100 001 10 000 0111 222
Q ss_pred ccceEEeecccc-----cccccccccccc-ceEEEecCCCCCC-HH-HHHHHHhCCc
Q psy1913 355 DKVDILVPAAIE-----KVIRKSNADKVQ-AKIIVEAANGPLT-PA-AHAMLLKKNV 403 (535)
Q Consensus 355 ~~~DILiPaA~~-----~~It~~na~~i~-AkiIvEgAN~p~T-~e-A~~iL~~rGI 403 (535)
.+|||++-|... +.|+.+-...++ -.+++.-|-|++- .+ .-+.|.+.-|
T Consensus 189 ~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i 245 (312)
T PRK15469 189 SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKV 245 (312)
T ss_pred hcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCe
Confidence 478999888663 344444444554 3688888999853 33 3356766655
No 91
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=94.97 E-value=0.058 Score=56.88 Aligned_cols=101 Identities=19% Similarity=0.211 Sum_probs=66.4
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF 354 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~ 354 (535)
.|.|++|.|.|+|++|+.+|+.|...|.+|++.. .+.+..... .+..+. +++
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d-------------~~~~~~~~~------------~~~~~~l~ell- 196 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGATITAYD-------------AYPNKDLDF------------LTYKDSVKEAI- 196 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEe-------------CChhHhhhh------------hhccCCHHHHH-
Confidence 5789999999999999999999999999999832 222211110 011112 333
Q ss_pred ccceEEeeccccc-----ccccccccccc-ceEEEecCCCCC-CH-HHHHHHHhCCc
Q psy1913 355 DKVDILVPAAIEK-----VIRKSNADKVQ-AKIIVEAANGPL-TP-AAHAMLLKKNV 403 (535)
Q Consensus 355 ~~~DILiPaA~~~-----~It~~na~~i~-AkiIvEgAN~p~-T~-eA~~iL~~rGI 403 (535)
..||+++-|.... .++.+....++ -.+++..+=|++ .. ...+.|.+.-|
T Consensus 197 ~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i 253 (330)
T PRK12480 197 KDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTL 253 (330)
T ss_pred hcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCe
Confidence 4889999887743 45444445553 368999999995 33 33456766555
No 92
>PLN02928 oxidoreductase family protein
Probab=94.90 E-value=0.12 Score=54.89 Aligned_cols=114 Identities=19% Similarity=0.254 Sum_probs=68.6
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCC--CCcccCC--CC
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYP--GTKSAPT--DI 352 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~--~a~~i~~--el 352 (535)
.|.|+||.|.|||++|+.+|+.|...|++|++. |+.. +........-....+..+. ... ... ++
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~--------dr~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~el 223 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGVKLLAT--------RRSW---TSEPEDGLLIPNGDVDDLVDEKGG-HEDIYEF 223 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEE--------CCCC---ChhhhhhhccccccccccccccCc-ccCHHHH
Confidence 589999999999999999999999999999983 3322 0000000000000000000 011 112 33
Q ss_pred ccccceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCc
Q psy1913 353 MFDKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPAA-HAMLLKKNV 403 (535)
Q Consensus 353 l~~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~eA-~~iL~~rGI 403 (535)
+ ..|||++-|.. .+.|+.+....++ -.+++.-|=|++ ..+| .+.|.+.-|
T Consensus 224 l-~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i 281 (347)
T PLN02928 224 A-GEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHL 281 (347)
T ss_pred H-hhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 3 36899999876 5566666666665 368899999995 4433 355655444
No 93
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.83 E-value=0.03 Score=48.94 Aligned_cols=35 Identities=29% Similarity=0.291 Sum_probs=30.6
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEec
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE 311 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD 311 (535)
+++|++|.|.|.|+||..-++.|.+.|++|+.||.
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~ 38 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISP 38 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEES
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECC
Confidence 36899999999999999999999999999999884
No 94
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=94.82 E-value=0.19 Score=53.11 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=54.9
Q ss_pred EEEEEccccHHHHHHHHHHHCC----CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCccc-CCC------------
Q psy1913 282 TYIVQGFGNVGFHAARYFRRGR----AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKG-YPG------------ 344 (535)
Q Consensus 282 ~VaIQGfGnVG~~~A~~L~e~G----akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~-~~~------------ 344 (535)
+|+|.|||.+|+.+.+.|.+.+ ..|++|.|. ...+.+.|..+..++-+ |++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~------------~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~ 68 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNEL------------ADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVN 68 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecC------------CCHHHHHHHHhhCccCCCCCCcEEEeCCEEEEC
Confidence 5899999999999999998864 899998763 22333445544444322 211
Q ss_pred Ccc---c---CC---CCccccceEEeeccccccccccccccc---cceEEEec
Q psy1913 345 TKS---A---PT---DIMFDKVDILVPAAIEKVIRKSNADKV---QAKIIVEA 385 (535)
Q Consensus 345 a~~---i---~~---ell~~~~DILiPaA~~~~It~~na~~i---~AkiIvEg 385 (535)
.+. . ++ .+-+.++|+.+.|+... .+.+-+... .|+.|.-.
T Consensus 69 g~~i~v~~~~~p~~~~w~~~gvDiVie~tG~~-~s~e~a~~~l~aGa~~V~~S 120 (325)
T TIGR01532 69 GDCIRVLHSPTPEALPWRALGVDLVLDCTGVY-GNREQGERHIRAGAKRVLFS 120 (325)
T ss_pred CeEEEEEEcCChhhccccccCCCEEEEccchh-ccHHHHHHHHHcCCeEEEec
Confidence 111 1 12 22247999999999654 555554433 24444444
No 95
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.81 E-value=0.15 Score=52.94 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=41.6
Q ss_pred CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEE
Q psy1913 248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQG-FGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVa 308 (535)
.+.|..||...++ ..|+ +++|++|+|.| ...||+-+|.+|.++||.|..
T Consensus 138 ~PcTp~av~~lL~----------~~~i--~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~ 187 (284)
T PRK14190 138 LPCTPHGILELLK----------EYNI--DISGKHVVVVGRSNIVGKPVGQLLLNENATVTY 187 (284)
T ss_pred CCCCHHHHHHHHH----------HcCC--CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEE
Confidence 5889999876666 4566 58999999999 577899999999999998875
No 96
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=94.80 E-value=0.3 Score=54.12 Aligned_cols=122 Identities=15% Similarity=0.184 Sum_probs=76.9
Q ss_pred chHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHH
Q psy1913 250 ATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDL 329 (535)
Q Consensus 250 aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L 329 (535)
--+.|+..+++ +.+. +++++++.|.|.|.+|+.++..|.+.|++|+. .+ -+.+.+
T Consensus 314 TD~~G~~~~l~----------~~~~--~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i-~~------------R~~~~~ 368 (477)
T PRK09310 314 TDGEGLFSLLK----------QKNI--PLNNQHVAIVGAGGAAKAIATTLARAGAELLI-FN------------RTKAHA 368 (477)
T ss_pred cCHHHHHHHHH----------hcCC--CcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEE-Ee------------CCHHHH
Confidence 35778777776 2343 46899999999999999999999999998765 22 344455
Q ss_pred HHHHHHcCCcccCCCCcccCC-CCccccceEEeeccccccccccccccccceEEEecCCCC-CCHHHHHHHHhCCceeec
Q psy1913 330 HTYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGP-LTPAAHAMLLKKNVLIIP 407 (535)
Q Consensus 330 ~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p-~T~eA~~iL~~rGI~viP 407 (535)
.+..+..+. ....... .-+ .++|++|-|+..+..-.+ .+ .++|++-.=+| .|+-. +..+++|+.++.
T Consensus 369 ~~la~~~~~-----~~~~~~~~~~l-~~~DiVInatP~g~~~~~---~l-~~~v~D~~Y~P~~T~ll-~~A~~~G~~~~~ 437 (477)
T PRK09310 369 EALASRCQG-----KAFPLESLPEL-HRIDIIINCLPPSVTIPK---AF-PPCVVDINTLPKHSPYT-QYARSQGSSIIY 437 (477)
T ss_pred HHHHHHhcc-----ceechhHhccc-CCCCEEEEcCCCCCcchh---HH-hhhEEeccCCCCCCHHH-HHHHHCcCEEEC
Confidence 444443210 0000111 112 479999999875542222 22 25888888777 57643 556788876653
No 97
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=94.79 E-value=0.035 Score=50.94 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=42.9
Q ss_pred CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccce
Q psy1913 280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVD 358 (535)
Q Consensus 280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~D 358 (535)
-.+|.|+|.|+||.++++.|.+.|..|++|...+ .....+..... +.....+. +++ .++|
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs------------~~sa~~a~~~~------~~~~~~~~~~~~-~~aD 70 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRS------------PASAERAAAFI------GAGAILDLEEIL-RDAD 70 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH------------H-HHHHHHC--------TT-----TTGGG-CC-S
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC------------ccccccccccc------cccccccccccc-ccCC
Confidence 4799999999999999999999999999875431 22222222111 11222222 443 4899
Q ss_pred EEeecccccccc
Q psy1913 359 ILVPAAIEKVIR 370 (535)
Q Consensus 359 ILiPaA~~~~It 370 (535)
+++-|...+.|.
T Consensus 71 lv~iavpDdaI~ 82 (127)
T PF10727_consen 71 LVFIAVPDDAIA 82 (127)
T ss_dssp EEEE-S-CCHHH
T ss_pred EEEEEechHHHH
Confidence 999998877765
No 98
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=94.77 E-value=0.53 Score=47.87 Aligned_cols=127 Identities=14% Similarity=0.174 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHH
Q psy1913 251 TGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH 330 (535)
Q Consensus 251 Tg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~ 330 (535)
-+.|...+++. .+. ..+++++.|.|.|.+|+.++..|.+.|++|+. .+ -+.+++.
T Consensus 100 D~~G~~~~l~~----------~~~--~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v-~~------------R~~~~~~ 154 (270)
T TIGR00507 100 DGIGLVSDLER----------LIP--LRPNQRVLIIGAGGAARAVALPLLKADCNVII-AN------------RTVSKAE 154 (270)
T ss_pred CHHHHHHHHHh----------cCC--CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEE-Ee------------CCHHHHH
Confidence 57787777652 121 24688999999999999999999999987665 22 3444444
Q ss_pred HHHHHcCCcccCCCCcccCC-CCccccceEEeecccccccccc---c--ccccc-ceEEEecCCCC-CCHHHHHHHHhCC
Q psy1913 331 TYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKS---N--ADKVQ-AKIIVEAANGP-LTPAAHAMLLKKN 402 (535)
Q Consensus 331 ~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~~~~It~~---n--a~~i~-AkiIvEgAN~p-~T~eA~~iL~~rG 402 (535)
+..++... +.....++. +....++||+|-|+.-+.-... . ...++ -.+|++-.=.| -|+ --+..+++|
T Consensus 155 ~la~~~~~---~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T~-ll~~A~~~G 230 (270)
T TIGR00507 155 ELAERFQR---YGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGETP-FLAEAKSLG 230 (270)
T ss_pred HHHHHHhh---cCceEEechhhhcccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCCH-HHHHHHHCC
Confidence 44433211 101111222 2222479999999875432211 1 12233 35788887776 464 445567888
Q ss_pred ceee
Q psy1913 403 VLII 406 (535)
Q Consensus 403 I~vi 406 (535)
+.++
T Consensus 231 ~~~v 234 (270)
T TIGR00507 231 TKTI 234 (270)
T ss_pred Ceee
Confidence 7765
No 99
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.77 E-value=0.12 Score=54.09 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=42.5
Q ss_pred CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccc-cHHHHHHHHHHHCCCeEEE
Q psy1913 248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFG-NVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfG-nVG~~~A~~L~e~GakVVa 308 (535)
.+.|..|+...++ ..|+ +++|++|+|.|-| .||..+|.+|.++|+.|+.
T Consensus 139 ~PcTp~aii~lL~----------~~~i--~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv 188 (301)
T PRK14194 139 TPCTPSGCLRLLE----------DTCG--DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTV 188 (301)
T ss_pred CCCcHHHHHHHHH----------HhCC--CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEE
Confidence 5889999876666 4565 5899999999996 9999999999999999876
No 100
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.75 E-value=0.06 Score=60.18 Aligned_cols=105 Identities=21% Similarity=0.202 Sum_probs=67.6
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF 354 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~ 354 (535)
.|.|+||.|.|||++|+.+|+.|...|++|++ |||.. +.+.. .+. +.+..+. +++
T Consensus 135 ~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~--------~d~~~---~~~~~----~~~-------g~~~~~~l~ell- 191 (525)
T TIGR01327 135 ELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLA--------YDPYI---SPERA----EQL-------GVELVDDLDELL- 191 (525)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEE--------ECCCC---ChhHH----Hhc-------CCEEcCCHHHHH-
Confidence 58999999999999999999999999999988 44432 11111 111 1222222 444
Q ss_pred ccceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHH-HHHHHHhCCce
Q psy1913 355 DKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPA-AHAMLLKKNVL 404 (535)
Q Consensus 355 ~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~e-A~~iL~~rGI~ 404 (535)
..||+++-|.. .+.|+.+....++ -.+++.-|=|++ ..+ ..+.|.+..|.
T Consensus 192 ~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 249 (525)
T TIGR01327 192 ARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVR 249 (525)
T ss_pred hhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCee
Confidence 47888887765 3455555555553 357788888884 333 33567666664
No 101
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.74 E-value=0.053 Score=57.99 Aligned_cols=93 Identities=24% Similarity=0.330 Sum_probs=57.1
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC-cc-cCCCCcccCCCCcc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT-IK-GYPGTKSAPTDIMF 354 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~-v~-~~~~a~~i~~ell~ 354 (535)
++.+.+|+|.|+|.+|..+++.+...|++|++ .|.+.+.+.+.....+. +. .+.....+. +.+
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v-------------~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~-~~l- 228 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTI-------------LDINIDRLRQLDAEFGGRIHTRYSNAYEIE-DAV- 228 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEE-------------EECCHHHHHHHHHhcCceeEeccCCHHHHH-HHH-
Confidence 36778999999999999999999999999777 34566666555444332 10 000000000 122
Q ss_pred ccceEEeeccc------ccccccccccccc-ceEEEe
Q psy1913 355 DKVDILVPAAI------EKVIRKSNADKVQ-AKIIVE 384 (535)
Q Consensus 355 ~~~DILiPaA~------~~~It~~na~~i~-AkiIvE 384 (535)
.++||+|-|+. ...|+.+-...++ -.+|+.
T Consensus 229 ~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 229 KRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred ccCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence 37899998862 2335666655554 234554
No 102
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=94.68 E-value=0.44 Score=49.18 Aligned_cols=130 Identities=13% Similarity=0.083 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHH
Q psy1913 251 TGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH 330 (535)
Q Consensus 251 Tg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~ 330 (535)
-+.|+..+++.. + .++++++|.|.|.|.+|+.++..|.+.|++=|.|.|+ +.++..
T Consensus 110 D~~G~~~~l~~~----------~--~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR------------~~~ka~ 165 (284)
T PRK12549 110 DWSGFAESFRRG----------L--PDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDV------------DPARAA 165 (284)
T ss_pred CHHHHHHHHHhh----------c--cCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECC------------CHHHHH
Confidence 477887777621 1 2367899999999999999999999999854555543 344444
Q ss_pred HHHHHcCCcccCCCCcccCC-CCc--cccceEEeecccccccccc----cccccc-ceEEEecCCCC-CCHHHHHHHHhC
Q psy1913 331 TYKITKGTIKGYPGTKSAPT-DIM--FDKVDILVPAAIEKVIRKS----NADKVQ-AKIIVEAANGP-LTPAAHAMLLKK 401 (535)
Q Consensus 331 ~~~~~~g~v~~~~~a~~i~~-ell--~~~~DILiPaA~~~~It~~----na~~i~-AkiIvEgAN~p-~T~eA~~iL~~r 401 (535)
+..+..+. .++....... ++. -.++||+|-|+.-+.-... +...++ ..+|.+-.-+| .|+=. +.-+++
T Consensus 166 ~la~~l~~--~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll-~~A~~~ 242 (284)
T PRK12549 166 ALADELNA--RFPAARATAGSDLAAALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLETELL-RAARAL 242 (284)
T ss_pred HHHHHHHh--hCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCCCHHH-HHHHHC
Confidence 44332210 0111111111 211 1479999999754321111 112232 35788888787 45544 334677
Q ss_pred Cceeec
Q psy1913 402 NVLIIP 407 (535)
Q Consensus 402 GI~viP 407 (535)
|..++.
T Consensus 243 G~~~~~ 248 (284)
T PRK12549 243 GCRTLD 248 (284)
T ss_pred CCeEec
Confidence 876653
No 103
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=94.66 E-value=1.6 Score=47.69 Aligned_cols=203 Identities=10% Similarity=0.104 Sum_probs=115.7
Q ss_pred CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCccc-----C--CCCcccC-C-
Q psy1913 280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKG-----Y--PGTKSAP-T- 350 (535)
Q Consensus 280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~-----~--~~a~~i~-~- 350 (535)
.++|+|+|.|.||..+|..|.+ |..|++ .|+|.+.+..+.+..-.+.. + .+.-..+ .
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g-------------~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~ 71 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVG-------------FDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEI 71 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CCEEEE-------------EeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCH
Confidence 3789999999999999999877 699998 66887777766521110100 0 0011111 1
Q ss_pred CCccccceEEeecccccccccccc--------------cccc--ceEEEecCCCCC-CHH-HHHHHHh-CCceeeccccc
Q psy1913 351 DIMFDKVDILVPAAIEKVIRKSNA--------------DKVQ--AKIIVEAANGPL-TPA-AHAMLLK-KNVLIIPDIFA 411 (535)
Q Consensus 351 ell~~~~DILiPaA~~~~It~~na--------------~~i~--AkiIvEgAN~p~-T~e-A~~iL~~-rGI~viPD~la 411 (535)
+ .-.+||+++-|-.... +.++. ..++ .-+|.+..-.|- |.+ +..+|.+ .|+.+.-|+..
T Consensus 72 ~-~~~~advvii~Vptp~-~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~ 149 (425)
T PRK15182 72 E-KIKECNFYIITVPTPI-NTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYV 149 (425)
T ss_pred H-HHcCCCEEEEEcCCCC-CCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeE
Confidence 2 2358999998876442 22111 1121 357777877784 443 4456654 47765544433
Q ss_pred ------cccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHH
Q psy1913 412 ------NAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQ 485 (535)
Q Consensus 412 ------NaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~ 485 (535)
-.+|....-+.++. .+-- .-+ +...++++.+++.+.. ...-...+...++.++ ++.
T Consensus 150 ~~~PE~v~~G~a~~~~~~~~---riv~-----G~~-~~~~~~~~~ly~~~~~---~~~~~~~~~~~AE~~K------l~~ 211 (425)
T PRK15182 150 GYSPERINPGDKKHRLTNIK---KITS-----GST-AQIAELIDEVYQQIIS---AGTYKAESIKVAEAAK------VIE 211 (425)
T ss_pred eeCCCcCCCCcccccccCCC---eEEE-----CCC-HHHHHHHHHHHHHHhh---cCcEEecCHHHHHHHH------HHH
Confidence 34555444433222 1111 212 3334455555554421 0111223345555555 677
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Q psy1913 486 SSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYC 518 (535)
Q Consensus 486 ~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~ 518 (535)
.-+-.......+++..+|++.+ +|.++..-.
T Consensus 212 N~~~av~Ia~~NE~a~lae~~G--iD~~~v~~a 242 (425)
T PRK15182 212 NTQRDLNIALVNELAIIFNRLN--IDTEAVLRA 242 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--cCHHHHHHH
Confidence 7888888888999999999985 787766544
No 104
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=94.66 E-value=0.072 Score=56.06 Aligned_cols=105 Identities=15% Similarity=0.200 Sum_probs=66.8
Q ss_pred CCCCcEEEEEccccHHHHHHHHHH-HCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCcc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFR-RGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMF 354 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~-e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~ 354 (535)
+|.|+||.|.|||++|+.+|+.+. -.|.+|++ |++.. +.+. .... +.+..+- +++
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~--------~~~~~---~~~~----~~~~-------~~~~~~l~ell- 198 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAHFGFNMPILY--------NARRH---HKEA----EERF-------NARYCDLDTLL- 198 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEE--------ECCCC---chhh----HHhc-------CcEecCHHHHH-
Confidence 589999999999999999999997 78999987 23221 1110 0111 1122222 444
Q ss_pred ccceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHH-HHHHHHhCCce
Q psy1913 355 DKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPA-AHAMLLKKNVL 404 (535)
Q Consensus 355 ~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~e-A~~iL~~rGI~ 404 (535)
..|||++.+.. .+.|+.+....++ --+++.-|-|++ ..+ ..+.|++.-|.
T Consensus 199 ~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 256 (323)
T PRK15409 199 QESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIH 256 (323)
T ss_pred HhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 48899888765 3455555555554 368888899995 333 33566655453
No 105
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=94.62 E-value=0.19 Score=52.38 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=49.4
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD 355 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~ 355 (535)
+.+++|+|.|+|.+|..+++.|...|+..|.|+| .+.+...+..++.|. ....++. +.+ .
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~------------r~~~ra~~la~~~g~-----~~~~~~~~~~~l-~ 237 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIAN------------RTYERAEELAKELGG-----NAVPLDELLELL-N 237 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEe------------CCHHHHHHHHHHcCC-----eEEeHHHHHHHH-h
Confidence 6899999999999999999999998866555544 455666666665542 0011111 222 4
Q ss_pred cceEEeeccccccc
Q psy1913 356 KVDILVPAAIEKVI 369 (535)
Q Consensus 356 ~~DILiPaA~~~~I 369 (535)
++||+|-|+.....
T Consensus 238 ~aDvVi~at~~~~~ 251 (311)
T cd05213 238 EADVVISATGAPHY 251 (311)
T ss_pred cCCEEEECCCCCch
Confidence 68999988875443
No 106
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.62 E-value=0.15 Score=52.92 Aligned_cols=83 Identities=25% Similarity=0.243 Sum_probs=59.5
Q ss_pred CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCC
Q psy1913 247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEIN 325 (535)
Q Consensus 247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLD 325 (535)
-.+.|..||...++ ..+. +++|++|+|.| ...||.-++.+|.++||.|.. ++++ . -|
T Consensus 137 ~~PcTp~av~~lL~----------~~~i--~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~-chs~-------T--~~ 194 (278)
T PRK14172 137 FLPCTPNSVITLIK----------SLNI--DIEGKEVVVIGRSNIVGKPVAQLLLNENATVTI-CHSK-------T--KN 194 (278)
T ss_pred CcCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCccchHHHHHHHHHCCCEEEE-eCCC-------C--CC
Confidence 36889999886666 4565 58999999999 567899999999999998765 3321 1 11
Q ss_pred HHHHHHHHHHcCCcccCCCCcccCCCCccccceEEeeccc-cccccccccc
Q psy1913 326 YKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAI-EKVIRKSNAD 375 (535)
Q Consensus 326 i~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~-~~~It~~na~ 375 (535)
+.+ +...+||+|-|+. .+.|+.+...
T Consensus 195 l~~------------------------~~~~ADIvIsAvGkp~~i~~~~ik 221 (278)
T PRK14172 195 LKE------------------------VCKKADILVVAIGRPKFIDEEYVK 221 (278)
T ss_pred HHH------------------------HHhhCCEEEEcCCCcCccCHHHcC
Confidence 111 2357899998887 6777766544
No 107
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=94.61 E-value=0.084 Score=58.73 Aligned_cols=195 Identities=11% Similarity=0.054 Sum_probs=107.6
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCc---ccCC--CCccc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTK---SAPT--DIMFD 355 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~---~i~~--ell~~ 355 (535)
.+|.++|+|+.|..+|+-|.+.|.+|++ .|.+.+...+..+..... ++. ..+. ++.+.
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V-------------~NRt~~k~~~l~~~~~~~----Ga~~~~~a~s~~e~v~~ 69 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISV-------------YNRTTSKVDETVERAKKE----GNLPLYGFKDPEDFVLS 69 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEE-------------ECCCHHHHHHHHHhhhhc----CCcccccCCCHHHHHhc
Confidence 4799999999999999999999999987 445566665555421000 111 1111 33322
Q ss_pred --cceEEeecccccccccc----ccccc-cceEEEecCCCC--CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhc
Q psy1913 356 --KVDILVPAAIEKVIRKS----NADKV-QAKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKN 426 (535)
Q Consensus 356 --~~DILiPaA~~~~It~~----na~~i-~AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn 426 (535)
.||+++-|-..+....+ -.+.+ .-++|+++.|.. .|.+..+.|.++|+.|+= .-=+||... .++
T Consensus 70 l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fld--apVSGG~~g-----A~~ 142 (493)
T PLN02350 70 IQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLG--MGVSGGEEG-----ARN 142 (493)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEe--CCCcCCHHH-----hcC
Confidence 58999888653332222 23333 347999999985 567777889999999872 223333321 111
Q ss_pred cccccccccccccchh---hHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q psy1913 427 ISHSSLGRMSFGYDKE---ISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYA 503 (535)
Q Consensus 427 ~~~~~~grl~~~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a 503 (535)
-..+-.| . +++ +.+.+++.|...... +......-+.-...+ ...|+..++..+..++-+.+.++
T Consensus 143 G~~im~G----G-~~~a~~~v~pvL~~ia~k~~~--~~~v~~vG~~GaG~~------vKlv~N~i~~~~m~~iaEA~~l~ 209 (493)
T PLN02350 143 GPSLMPG----G-SFEAYKNIEDILEKVAAQVDD--GPCVTYIGPGGAGNF------VKMVHNGIEYGDMQLISEAYDVL 209 (493)
T ss_pred CCeEEec----C-CHHHHHHHHHHHHHHhhhcCC--CCcEEEeCCcCHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011111 1 221 122223222210000 000000011122222 33799999999999999999999
Q ss_pred HH-cCCCCCHHH
Q psy1913 504 EK-SDNKLDLRN 514 (535)
Q Consensus 504 ~~-~~~~~~lR~ 514 (535)
++ .+ +|...
T Consensus 210 ~~~~G--ld~~~ 219 (493)
T PLN02350 210 KSVGG--LSNEE 219 (493)
T ss_pred HhhCC--CCHHH
Confidence 87 44 56444
No 108
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.55 E-value=0.18 Score=52.41 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=42.2
Q ss_pred CCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEE
Q psy1913 246 GRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 246 gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVa 308 (535)
+..++|.+||...++ ..|+ +++|++|+|.|= ..||.-+|.+|..+||.|+.
T Consensus 134 ~~~PcTp~avi~lL~----------~~~i--~l~Gk~vvViGrS~iVGkPla~lL~~~~atVti 185 (282)
T PRK14169 134 TVVASTPYGIMALLD----------AYDI--DVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTI 185 (282)
T ss_pred CCCCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCccchHHHHHHHHHCCCEEEE
Confidence 346999999876666 4565 589999999995 56899999999999998864
No 109
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=94.53 E-value=0.28 Score=50.26 Aligned_cols=109 Identities=13% Similarity=0.150 Sum_probs=78.7
Q ss_pred HHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCe----------EEEEecCCceEeCCCCCCCCHHHHH--HHHHHc
Q psy1913 269 MCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAK----------CLAIVEHDTAIVPDKGTEINYKDLH--TYKITK 336 (535)
Q Consensus 269 ~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Gak----------VVaVsD~~G~iynp~G~dLDi~~L~--~~~~~~ 336 (535)
++..|. +|+..||+|.|.|..|.++|++|.+.+.+ =+-+.|++|-|++... |++..... ++.+.
T Consensus 16 lk~~g~--~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~-~l~~~~~~~~~~~~~- 91 (254)
T cd00762 16 LKVTKK--KISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRK-ETCPNEYHLARFANP- 91 (254)
T ss_pred HHHhCC--ChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCC-ccCHHHHHHHHHcCc-
Confidence 345564 48999999999999999999999987654 5678999999998874 45543221 11111
Q ss_pred CCcccCCCCcccCC--CCc-cccceEEeeccc-ccccccccccccc----ceEEEecCCCC
Q psy1913 337 GTIKGYPGTKSAPT--DIM-FDKVDILVPAAI-EKVIRKSNADKVQ----AKIIVEAANGP 389 (535)
Q Consensus 337 g~v~~~~~a~~i~~--ell-~~~~DILiPaA~-~~~It~~na~~i~----AkiIvEgAN~p 389 (535)
...... +.+ ..+.||||=++. ++.+|++-+..+. =.||---+|--
T Consensus 92 --------~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt 144 (254)
T cd00762 92 --------ERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPT 144 (254)
T ss_pred --------ccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcC
Confidence 111122 333 469999999988 9999999888884 47888888853
No 110
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=94.50 E-value=0.22 Score=51.59 Aligned_cols=109 Identities=13% Similarity=0.179 Sum_probs=78.6
Q ss_pred HHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHC----CC------eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC
Q psy1913 269 MCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRG----RA------KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT 338 (535)
Q Consensus 269 ~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~----Ga------kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~ 338 (535)
++..|. +|+..||+|.|.|..|.++|++|.+. |. +=+-+.|++|-|++... ||+.. ...+.+....
T Consensus 16 lk~~g~--~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~-~l~~~-~~~~a~~~~~ 91 (279)
T cd05312 16 LRITGK--PLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRK-DLTPF-KKPFARKDEE 91 (279)
T ss_pred HHHhCC--ChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCC-cchHH-HHHHHhhcCc
Confidence 345564 48899999999999999999999875 87 56688999999998775 34322 2233332210
Q ss_pred cccCCCCcccCC--CCc-cccceEEeeccc-ccccccccccccc----ceEEEecCCC
Q psy1913 339 IKGYPGTKSAPT--DIM-FDKVDILVPAAI-EKVIRKSNADKVQ----AKIIVEAANG 388 (535)
Q Consensus 339 v~~~~~a~~i~~--ell-~~~~DILiPaA~-~~~It~~na~~i~----AkiIvEgAN~ 388 (535)
..... +.+ .+++||||=++. ++.+|++-+..+. =.||---+|-
T Consensus 92 -------~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP 142 (279)
T cd05312 92 -------KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNP 142 (279)
T ss_pred -------ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCc
Confidence 01112 333 469999999995 7999999988884 4788888885
No 111
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.45 E-value=0.081 Score=52.77 Aligned_cols=111 Identities=23% Similarity=0.317 Sum_probs=67.7
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH-cCC--cccCCCCcccCCCCc----
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT-KGT--IKGYPGTKSAPTDIM---- 353 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~-~g~--v~~~~~a~~i~~ell---- 353 (535)
++|+|.|.|.||+.+|+.|.+.|..|++| |-|.+.+.++... ... +.+ .++ +.+.|
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~I-------------d~d~~~~~~~~~~~~~~~~v~g--d~t--~~~~L~~ag 63 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLI-------------DRDEERVEEFLADELDTHVVIG--DAT--DEDVLEEAG 63 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEE-------------EcCHHHHHHHhhhhcceEEEEe--cCC--CHHHHHhcC
Confidence 58999999999999999999999999993 4666777664442 211 111 011 11222
Q ss_pred cccceEEeeccccccccc---ccccc-ccceEEEecCCCCCCHHHHHHHHhCC--ceeeccccc
Q psy1913 354 FDKVDILVPAAIEKVIRK---SNADK-VQAKIIVEAANGPLTPAAHAMLLKKN--VLIIPDIFA 411 (535)
Q Consensus 354 ~~~~DILiPaA~~~~It~---~na~~-i~AkiIvEgAN~p~T~eA~~iL~~rG--I~viPD~la 411 (535)
-.++|++|-+...+.++. ..|.+ +..+-|+==++ +++..++|.+-| ..+-|...+
T Consensus 64 i~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~---~~~~~~~~~~~g~~~ii~Pe~~~ 124 (225)
T COG0569 64 IDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARAR---NPEHEKVLEKLGADVIISPEKLA 124 (225)
T ss_pred CCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEec---CHHHHHHHHHcCCcEEECHHHHH
Confidence 368999999887665543 12211 22222222222 456778888888 456666543
No 112
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=94.45 E-value=0.85 Score=51.47 Aligned_cols=180 Identities=14% Similarity=0.173 Sum_probs=116.7
Q ss_pred CHHHHHHHHHHHHHHHhccCccCCCCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchH
Q psy1913 173 NNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATG 252 (535)
Q Consensus 173 s~~Eler~~r~f~~~L~~~~~iGp~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg 252 (535)
+..|...+...|+.++..+ . |..-|==.|++..- ---+.+.|+... -++-. --.-||
T Consensus 221 ~g~eY~~f~defv~av~~~--~-P~~~Iq~EDf~~~n--af~iL~kyr~~i--------~~FnD----------DiQGTa 277 (559)
T PTZ00317 221 DDDEYYELLDEFMEAVSSR--W-PNAVVQFEDFSNNH--CFDLLERYQNKY--------RCFND----------DIQGTG 277 (559)
T ss_pred ChhhHHHHHHHHHHHHHHh--C-CCeEEehhhcCCcc--HHHHHHHhccCC--------CEecc----------cchhHH
Confidence 6778888999999988863 3 67667778887643 234567775421 12211 123455
Q ss_pred HHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHH----CCC------eEEEEecCCceEeCCCCC
Q psy1913 253 RGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR----GRA------KCLAIVEHDTAIVPDKGT 322 (535)
Q Consensus 253 ~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e----~Ga------kVVaVsD~~G~iynp~G~ 322 (535)
-=+..++.+++ +..|. .|+..||++.|.|..|..+|++|.+ .|. +=+-+.|++|-|+...+.
T Consensus 278 aV~lAgll~Al------r~~g~--~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~ 349 (559)
T PTZ00317 278 AVIAAGFLNAL------KLSGV--PPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGD 349 (559)
T ss_pred HHHHHHHHHHH------HHhCC--ChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCc
Confidence 44455555444 34564 4899999999999999999999974 687 566788999999988752
Q ss_pred CCCHHHHHHHHHHcCCcccCCCCcccCC--CCc-cccceEEeeccc-ccccccccccccc----ceEEEecCCC
Q psy1913 323 EINYKDLHTYKITKGTIKGYPGTKSAPT--DIM-FDKVDILVPAAI-EKVIRKSNADKVQ----AKIIVEAANG 388 (535)
Q Consensus 323 dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell-~~~~DILiPaA~-~~~It~~na~~i~----AkiIvEgAN~ 388 (535)
+|+.... .+.+.... -++.. ... +.+ ..+.||||=++. ++.+|++-+..+. -.||---+|-
T Consensus 350 ~l~~~k~-~fa~~~~~---~~~~~-~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSNP 418 (559)
T PTZ00317 350 KLAKHKV-PFARTDIS---AEDSS-LKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSNP 418 (559)
T ss_pred cccHHHH-HHhccccc---ccccc-CCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 2433222 22221100 00000 122 333 578899999996 7999999888875 3788888884
No 113
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.42 E-value=0.057 Score=60.28 Aligned_cols=116 Identities=19% Similarity=0.192 Sum_probs=70.0
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcc--cCCC--------Ccc
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIK--GYPG--------TKS 347 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~--~~~~--------a~~ 347 (535)
..+.+|+|.|.|.+|..++..+...|++|++ .|.+.+.+...++-..... +... ++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a-------------~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~ 229 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRA-------------FDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKV 229 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEE-------------EeCCHHHHHHHHHcCCeEEEeccccccccccchhhh
Confidence 4589999999999999999999999999888 6677777766554222211 1100 011
Q ss_pred cCCC-------Ccc---ccceEEeecccc-c-----ccccccccccc--ceEEEecC----CCCCCHHHHHHHHhCCcee
Q psy1913 348 APTD-------IMF---DKVDILVPAAIE-K-----VIRKSNADKVQ--AKIIVEAA----NGPLTPAAHAMLLKKNVLI 405 (535)
Q Consensus 348 i~~e-------ll~---~~~DILiPaA~~-~-----~It~~na~~i~--AkiIvEgA----N~p~T~eA~~iL~~rGI~v 405 (535)
.+.+ ++. ..+||+|-|+.- + .|+.+-.+.++ ..+|-=|+ |-++|.....++..+||.+
T Consensus 230 ~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti 309 (509)
T PRK09424 230 MSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTI 309 (509)
T ss_pred cchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcccccCccceEeECCEEE
Confidence 1111 121 369999999973 2 44666666664 23333232 3234433344444578766
Q ss_pred e
Q psy1913 406 I 406 (535)
Q Consensus 406 i 406 (535)
+
T Consensus 310 ~ 310 (509)
T PRK09424 310 I 310 (509)
T ss_pred E
Confidence 4
No 114
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.41 E-value=0.073 Score=52.30 Aligned_cols=82 Identities=17% Similarity=0.158 Sum_probs=52.5
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCcccc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDK 356 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~ 356 (535)
+++|++|.|.|.|.||...++.|.+.|++|+.|+. ++. ++|.+.... +.+.-. ...+..+-+ .+
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~-----------~~~-~~l~~l~~~-~~i~~~--~~~~~~~~l-~~ 70 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP-----------ELT-ENLVKLVEE-GKIRWK--QKEFEPSDI-VD 70 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC-----------CCC-HHHHHHHhC-CCEEEE--ecCCChhhc-CC
Confidence 47899999999999999999999999999988752 133 234444332 222110 001111111 47
Q ss_pred ceEEeecccccccccccc
Q psy1913 357 VDILVPAAIEKVIRKSNA 374 (535)
Q Consensus 357 ~DILiPaA~~~~It~~na 374 (535)
+|++|-|+-...+|..-+
T Consensus 71 adlViaaT~d~elN~~i~ 88 (202)
T PRK06718 71 AFLVIAATNDPRVNEQVK 88 (202)
T ss_pred ceEEEEcCCCHHHHHHHH
Confidence 899998877666665443
No 115
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.38 E-value=0.24 Score=51.36 Aligned_cols=53 Identities=25% Similarity=0.160 Sum_probs=43.4
Q ss_pred CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccc-cHHHHHHHHHHHCCCeEEEEecC
Q psy1913 247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFG-NVGFHAARYFRRGRAKCLAIVEH 312 (535)
Q Consensus 247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfG-nVG~~~A~~L~e~GakVVaVsD~ 312 (535)
-.+.|..||...++ ..++ +++|++|+|.|-+ .||.-+|.+|.++||.|. ++.+
T Consensus 136 ~~PcTp~avi~lL~----------~~~i--~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVt-i~hs 189 (281)
T PRK14183 136 FVPCTPLGVMELLE----------EYEI--DVKGKDVCVVGASNIVGKPMAALLLNANATVD-ICHI 189 (281)
T ss_pred CCCCcHHHHHHHHH----------HcCC--CCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCC
Confidence 46889999876655 4565 5899999999987 899999999999999886 5544
No 116
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.38 E-value=0.2 Score=53.01 Aligned_cols=97 Identities=25% Similarity=0.313 Sum_probs=60.3
Q ss_pred cEEEEEccccHHHHHHHHHHHCC--CeEEEEecCCceEeCCCCCCCCH-HHHHHHHHHcCCccc----------CCCCc-
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGR--AKCLAIVEHDTAIVPDKGTEINY-KDLHTYKITKGTIKG----------YPGTK- 346 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~G--akVVaVsD~~G~iynp~G~dLDi-~~L~~~~~~~g~v~~----------~~~a~- 346 (535)
.+|+|=|||-.|+.+++.+.+.+ ..||||.|. +|.|. ..|+++-.-+|.+.+ |.+..
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~---------t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I 72 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL---------TDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGI 72 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC---------CCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceE
Confidence 48999999999999999999875 899999875 11221 222222211332221 11111
Q ss_pred -c---cCC---CCccccceEEeecccccccccccccc-cc---ceEEEecCC
Q psy1913 347 -S---APT---DIMFDKVDILVPAAIEKVIRKSNADK-VQ---AKIIVEAAN 387 (535)
Q Consensus 347 -~---i~~---ell~~~~DILiPaA~~~~It~~na~~-i~---AkiIvEgAN 387 (535)
. .++ ++-++.+||.+.|+.... +.+|+++ +. ||-|.-+|=
T Consensus 73 ~v~~~~~p~~l~w~d~gvdiVve~Tg~f~-~~e~~~~hl~agGaKkV~isap 123 (335)
T COG0057 73 KVLAERDPANLPWADLGVDIVVECTGKFT-GREKAEKHLKAGGAKKVLISAP 123 (335)
T ss_pred EEEecCChHHCCccccCccEEEECCCCcc-chhhHHHHHHhcCCCEEEEcCC
Confidence 0 111 223567899999998776 8899885 42 466665553
No 117
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.37 E-value=0.74 Score=47.12 Aligned_cols=127 Identities=16% Similarity=0.176 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCC-CeEEEEecCCceEeCCCCCCCCHHHH
Q psy1913 251 TGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGR-AKCLAIVEHDTAIVPDKGTEINYKDL 329 (535)
Q Consensus 251 Tg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~G-akVVaVsD~~G~iynp~G~dLDi~~L 329 (535)
.+.|...+++. .++. ++++++|.|.|.|.+|+.++..|.+.| .+|+. .+ -+.+.+
T Consensus 105 D~~G~~~~l~~---------~~~~--~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v-~~------------R~~~~a 160 (278)
T PRK00258 105 DGIGFVRALEE---------RLGV--DLKGKRILILGAGGAARAVILPLLDLGVAEITI-VN------------RTVERA 160 (278)
T ss_pred cHHHHHHHHHh---------ccCC--CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEE-Ee------------CCHHHH
Confidence 56676666652 1232 468999999999999999999999999 45554 33 334555
Q ss_pred HHHHHHcCCcccCCCCcc-cCC-CCccccceEEeeccccccccc-----ccccccc-ceEEEecCCCC-CCHHHHHHHHh
Q psy1913 330 HTYKITKGTIKGYPGTKS-APT-DIMFDKVDILVPAAIEKVIRK-----SNADKVQ-AKIIVEAANGP-LTPAAHAMLLK 400 (535)
Q Consensus 330 ~~~~~~~g~v~~~~~a~~-i~~-ell~~~~DILiPaA~~~~It~-----~na~~i~-AkiIvEgAN~p-~T~eA~~iL~~ 400 (535)
.+..++.+... .... .+. +.+ .++||+|-|+..+.-.. -....++ -.+|++..=+| -|+=. +.-++
T Consensus 161 ~~l~~~~~~~~---~~~~~~~~~~~~-~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll-~~A~~ 235 (278)
T PRK00258 161 EELAKLFGALG---KAELDLELQEEL-ADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPTPFL-AWAKA 235 (278)
T ss_pred HHHHHHhhhcc---ceeecccchhcc-ccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCCHHH-HHHHH
Confidence 55444332110 0111 111 222 47899999987655321 1122332 46788888777 45543 33477
Q ss_pred CCceee
Q psy1913 401 KNVLII 406 (535)
Q Consensus 401 rGI~vi 406 (535)
+|+.++
T Consensus 236 ~G~~~~ 241 (278)
T PRK00258 236 QGARTI 241 (278)
T ss_pred CcCeec
Confidence 787665
No 118
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.30 E-value=0.2 Score=52.05 Aligned_cols=50 Identities=20% Similarity=0.143 Sum_probs=41.5
Q ss_pred CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEE
Q psy1913 247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQG-FGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVa 308 (535)
-.+.|.+||..-++ ..++ +++|++|+|.| ...||.-+|.+|.++||.|..
T Consensus 138 ~~PcTp~avi~ll~----------~y~i--~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~ 188 (284)
T PRK14177 138 YLPCTPYGMVLLLK----------EYGI--DVTGKNAVVVGRSPILGKPMAMLLTEMNATVTL 188 (284)
T ss_pred CCCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEE
Confidence 46889999887665 3565 58999999999 567899999999999998775
No 119
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.27 E-value=0.17 Score=54.92 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=30.8
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa 308 (535)
.|.|+||.|.|||++|+.+|+.+...|++|++
T Consensus 148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~ 179 (409)
T PRK11790 148 EVRGKTLGIVGYGHIGTQLSVLAESLGMRVYF 179 (409)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 58999999999999999999999999999998
No 120
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.24 E-value=0.31 Score=51.10 Aligned_cols=114 Identities=21% Similarity=0.193 Sum_probs=67.0
Q ss_pred CCcEEEEEccccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHH-HHHHHHHcCCcccCCCCcccCCCCcc--
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKD-LHTYKITKGTIKGYPGTKSAPTDIMF-- 354 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~-L~~~~~~~g~v~~~~~a~~i~~ell~-- 354 (535)
+..+|+|.|.|++|...+..+.+ .+..+++|+| +|.+. .++..++.|--..|.+.+ +++.
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvd------------id~es~gla~A~~~Gi~~~~~~ie----~LL~~~ 66 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVG------------IDPESDGLARARRLGVATSAEGID----GLLAMP 66 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEe------------CChhhHHHHHHHHcCCCcccCCHH----HHHhCc
Confidence 45799999999999986666664 5789999986 34331 223344443111111111 3453
Q ss_pred --ccceEEeeccccccccccccccc---cceEEEec--CCCC-CCHH--HHHHHHhC--Cceeeccc
Q psy1913 355 --DKVDILVPAAIEKVIRKSNADKV---QAKIIVEA--ANGP-LTPA--AHAMLLKK--NVLIIPDI 409 (535)
Q Consensus 355 --~~~DILiPaA~~~~It~~na~~i---~AkiIvEg--AN~p-~T~e--A~~iL~~r--GI~viPD~ 409 (535)
.++|+.+-|+. +..+.+++... .+.+|.+- +++| +-|+ .++.+..+ ++...|.-
T Consensus 67 ~~~dIDiVf~AT~-a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ 132 (302)
T PRK08300 67 EFDDIDIVFDATS-AGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQ 132 (302)
T ss_pred CCCCCCEEEECCC-HHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHHHHhcccCCCEEECccH
Confidence 47999998884 45777777766 34566553 4666 3333 33444434 55544443
No 121
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.22 E-value=0.22 Score=51.75 Aligned_cols=82 Identities=20% Similarity=0.215 Sum_probs=59.5
Q ss_pred CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCH
Q psy1913 248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINY 326 (535)
Q Consensus 248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi 326 (535)
.+.|..||..-++ ..|. +++|++|+|.|= ..||.-+|.+|.++||.|+. +.++ + -|
T Consensus 137 ~PcTp~avi~lL~----------~y~i--~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~-chs~--------T-~n- 193 (282)
T PRK14166 137 LPCTPLGVMKLLK----------AYEI--DLEGKDAVIIGASNIVGRPMATMLLNAGATVSV-CHIK--------T-KD- 193 (282)
T ss_pred cCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEE-eCCC--------C-CC-
Confidence 5889999887666 3565 489999999995 66899999999999998875 3221 1 11
Q ss_pred HHHHHHHHHcCCcccCCCCcccCCCCccccceEEeeccc-cccccccccc
Q psy1913 327 KDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAI-EKVIRKSNAD 375 (535)
Q Consensus 327 ~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~-~~~It~~na~ 375 (535)
|. -+...+||+|-|+. .+.|+.+.+.
T Consensus 194 --l~---------------------~~~~~ADIvIsAvGkp~~i~~~~vk 220 (282)
T PRK14166 194 --LS---------------------LYTRQADLIIVAAGCVNLLRSDMVK 220 (282)
T ss_pred --HH---------------------HHHhhCCEEEEcCCCcCccCHHHcC
Confidence 11 12357899999987 6777766544
No 122
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.17 E-value=0.15 Score=53.06 Aligned_cols=50 Identities=22% Similarity=0.189 Sum_probs=43.0
Q ss_pred CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEE
Q psy1913 247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVa 308 (535)
-.+.|..||...++ ..|. +++|++|+|.|- |.||.-+|.+|.+.|+.|+.
T Consensus 137 ~~PcTp~avi~lL~----------~~~i--~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv 187 (284)
T PRK14179 137 MIPCTPAGIMEMFR----------EYNV--ELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTL 187 (284)
T ss_pred CcCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEE
Confidence 46899999876665 4565 589999999999 99999999999999999876
No 123
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=94.11 E-value=0.13 Score=54.62 Aligned_cols=90 Identities=21% Similarity=0.232 Sum_probs=55.1
Q ss_pred EEEEccccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcC--CcccCCC-------Cc-ccC-C
Q psy1913 283 YIVQGFGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKG--TIKGYPG-------TK-SAP-T 350 (535)
Q Consensus 283 VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g--~v~~~~~-------a~-~i~-~ 350 (535)
|+|.|||.+|+..++.+.+ .+.+||||+| .+++....+....| +...++. .. .+. .
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD------------~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~ 68 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTK------------TSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGT 68 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEec------------CChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCC
Confidence 6899999999999999875 5789999987 33333323332222 2111211 10 111 1
Q ss_pred --CCccccceEEeeccccccccccccccc---cceEEEecC
Q psy1913 351 --DIMFDKVDILVPAAIEKVIRKSNADKV---QAKIIVEAA 386 (535)
Q Consensus 351 --ell~~~~DILiPaA~~~~It~~na~~i---~AkiIvEgA 386 (535)
+++ .+||++++|+ +...+.+|+..+ ++|.|.-+|
T Consensus 69 ~eeLl-~~vDiVve~T-p~~~~~~na~~~~~~GakaVl~~~ 107 (333)
T TIGR01546 69 LEDLL-EKVDIVVDAT-PGGIGAKNKPLYEKAGVKAIFQGG 107 (333)
T ss_pred HHHHh-hcCCEEEECC-CCCCChhhHHHHHhCCcCEEEECC
Confidence 455 5799999997 566677777665 455555443
No 124
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.07 E-value=0.18 Score=52.59 Aligned_cols=50 Identities=16% Similarity=0.070 Sum_probs=43.3
Q ss_pred CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEE
Q psy1913 247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQG-FGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVa 308 (535)
-.+.|.+||...++ ..+. +++|++|+|.| .|.||..+|..|.+.|+.|+.
T Consensus 137 ~~PcTp~ai~~ll~----------~~~i--~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv 187 (296)
T PRK14188 137 LVPCTPLGCMMLLR----------RVHG--DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTI 187 (296)
T ss_pred CcCCCHHHHHHHHH----------HhCC--CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEE
Confidence 46899999887666 3455 58999999999 999999999999999999886
No 125
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=93.98 E-value=0.12 Score=57.86 Aligned_cols=104 Identities=18% Similarity=0.202 Sum_probs=63.6
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD 355 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~ 355 (535)
.|.|+||.|.|||++|+.+|+.|...|++|++ ||+.. +.+. .... +.+..+- +++ .
T Consensus 137 ~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~--------~d~~~---~~~~----~~~~-------g~~~~~l~ell-~ 193 (526)
T PRK13581 137 ELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIA--------YDPYI---SPER----AAQL-------GVELVSLDELL-A 193 (526)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEE--------ECCCC---ChhH----HHhc-------CCEEEcHHHHH-h
Confidence 47899999999999999999999999999988 33322 1111 1111 1222222 444 3
Q ss_pred cceEEeecccc-----cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCc
Q psy1913 356 KVDILVPAAIE-----KVIRKSNADKVQ-AKIIVEAANGPL-TPAA-HAMLLKKNV 403 (535)
Q Consensus 356 ~~DILiPaA~~-----~~It~~na~~i~-AkiIvEgAN~p~-T~eA-~~iL~~rGI 403 (535)
.||+++-|..- +.|+.+....++ -.+++.-|-+++ ..+| .+.|.+.-|
T Consensus 194 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 249 (526)
T PRK13581 194 RADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKV 249 (526)
T ss_pred hCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCe
Confidence 67888777653 345544444443 356777777773 3333 355655544
No 126
>KOG1370|consensus
Probab=93.86 E-value=0.088 Score=55.15 Aligned_cols=81 Identities=23% Similarity=0.360 Sum_probs=60.4
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCccccc
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKV 357 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~ 357 (535)
+.||-++|-|+|.||...|..|.-.|++|+. +++|+=..++..-+ +| +.++-+=...++
T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~Viv-------------TEiDPI~ALQAaMe-----G~---~V~tm~ea~~e~ 270 (434)
T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVIV-------------TEIDPICALQAAME-----GY---EVTTLEEAIREV 270 (434)
T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEEE-------------eccCchHHHHHHhh-----cc---EeeeHHHhhhcC
Confidence 5789999999999999999999999999998 88986544444332 12 221111123578
Q ss_pred eEEeeccc-cccccccccccccc
Q psy1913 358 DILVPAAI-EKVIRKSNADKVQA 379 (535)
Q Consensus 358 DILiPaA~-~~~It~~na~~i~A 379 (535)
||||-++. -++|+.+.-++++-
T Consensus 271 difVTtTGc~dii~~~H~~~mk~ 293 (434)
T KOG1370|consen 271 DIFVTTTGCKDIITGEHFDQMKN 293 (434)
T ss_pred CEEEEccCCcchhhHHHHHhCcC
Confidence 99999988 78999888877764
No 127
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=93.83 E-value=0.14 Score=55.64 Aligned_cols=100 Identities=14% Similarity=0.243 Sum_probs=65.8
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF 354 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~ 354 (535)
++.+++|.|.|.|.+|..+++.|...|+.-|.|++ .+.+.+.+..++.|. ....++. +.+
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~------------r~~~ra~~la~~~g~-----~~~~~~~~~~~l- 240 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVAN------------RTLERAEELAEEFGG-----EAIPLDELPEAL- 240 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEe------------CCHHHHHHHHHHcCC-----cEeeHHHHHHHh-
Confidence 36899999999999999999999999984333333 455666555555431 0111111 222
Q ss_pred ccceEEeeccc--cccccccccccc------cceEEEecCCCC-CCHHH
Q psy1913 355 DKVDILVPAAI--EKVIRKSNADKV------QAKIIVEAANGP-LTPAA 394 (535)
Q Consensus 355 ~~~DILiPaA~--~~~It~~na~~i------~AkiIvEgAN~p-~T~eA 394 (535)
.++||+|-|+. ...|+.+..... +-.+|+.-|+.. +.|+.
T Consensus 241 ~~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdid~~v 289 (423)
T PRK00045 241 AEADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRDIEPEV 289 (423)
T ss_pred ccCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCCcccc
Confidence 47899999975 456776665443 246899999755 55554
No 128
>PLN02712 arogenate dehydrogenase
Probab=93.78 E-value=0.099 Score=60.22 Aligned_cols=108 Identities=13% Similarity=0.123 Sum_probs=62.2
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF 354 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~ 354 (535)
++++++|+|+|+|++|+.+|+.|.+.|.+|+++. -+.. . +...+.| ....+. ++..
T Consensus 366 ~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~d-------------r~~~-~-~~a~~~G-------v~~~~~~~el~~ 423 (667)
T PLN02712 366 DGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYS-------------RSDY-S-DEAQKLG-------VSYFSDADDLCE 423 (667)
T ss_pred CCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEE-------------CChH-H-HHHHHcC-------CeEeCCHHHHHh
Confidence 5688999999999999999999999999988632 2211 1 1122232 122222 3444
Q ss_pred ccceEEeeccccc----ccccccccccc-ceEEEecCCCCC-CHHHHHHHHhCCceee
Q psy1913 355 DKVDILVPAAIEK----VIRKSNADKVQ-AKIIVEAANGPL-TPAAHAMLLKKNVLII 406 (535)
Q Consensus 355 ~~~DILiPaA~~~----~It~~na~~i~-AkiIvEgAN~p~-T~eA~~iL~~rGI~vi 406 (535)
..||++|-|.... ++..-....++ -.+|+.-+..-. .-++-+.+...|+.|+
T Consensus 424 ~~aDvVILavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v 481 (667)
T PLN02712 424 EHPEVILLCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDIL 481 (667)
T ss_pred cCCCEEEECCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceE
Confidence 4689999996533 22221111232 357777766532 1222222334566566
No 129
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.72 E-value=0.088 Score=49.74 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=31.7
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs 310 (535)
+|+|++|.|.|.|.||...++.|.+.|+.|+.|+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 4799999999999999999999999999998864
No 130
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.69 E-value=0.29 Score=51.20 Aligned_cols=49 Identities=22% Similarity=0.134 Sum_probs=41.0
Q ss_pred CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEE
Q psy1913 248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVa 308 (535)
.+.|.+||...++ ..|+ +++|++|+|.|= ..||.-+|.+|.++||.|..
T Consensus 138 ~PcTp~aii~lL~----------~~~i--~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv 187 (297)
T PRK14186 138 RSCTPAGVMRLLR----------SQQI--DIAGKKAVVVGRSILVGKPLALMLLAANATVTI 187 (297)
T ss_pred CCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCccchHHHHHHHHHCCCEEEE
Confidence 5889999876666 4566 589999999995 66899999999999998865
No 131
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.69 E-value=0.24 Score=51.50 Aligned_cols=110 Identities=15% Similarity=0.051 Sum_probs=65.2
Q ss_pred CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCC------CcccCC--C
Q psy1913 280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPG------TKSAPT--D 351 (535)
Q Consensus 280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~------a~~i~~--e 351 (535)
.++|+|.|.|++|..+|..|.+.|..|+.+ + -+.+.+............+++ ....+. +
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~--------~-----r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e 70 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLW--------A-----RRPEFAAALAAERENREYLPGVALPAELYPTADPEE 70 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEE--------e-----CCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHH
Confidence 358999999999999999999999988762 2 333444333332211111112 111222 2
Q ss_pred CccccceEEeecccccccccccccccc-ceEEEecCCCC--C---CHHHHHHHHh---CCce
Q psy1913 352 IMFDKVDILVPAAIEKVIRKSNADKVQ-AKIIVEAANGP--L---TPAAHAMLLK---KNVL 404 (535)
Q Consensus 352 ll~~~~DILiPaA~~~~It~~na~~i~-AkiIvEgAN~p--~---T~eA~~iL~~---rGI~ 404 (535)
.+ .+||+++-|.....+ .+-.+.++ -.+|+.-+||- . .....+++.+ +++.
T Consensus 71 ~~-~~aD~Vi~~v~~~~~-~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~ 130 (328)
T PRK14618 71 AL-AGADFAVVAVPSKAL-RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVA 130 (328)
T ss_pred HH-cCCCEEEEECchHHH-HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeE
Confidence 22 489999999887654 33444453 24777788852 1 3344556655 6653
No 132
>PRK08223 hypothetical protein; Validated
Probab=93.62 E-value=0.051 Score=56.49 Aligned_cols=118 Identities=16% Similarity=0.170 Sum_probs=66.3
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH-HcCCcccCCCCcccCCCCcccc
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI-TKGTIKGYPGTKSAPTDIMFDK 356 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~-~~g~v~~~~~a~~i~~ell~~~ 356 (535)
|+..+|+|.|.|-+|..+|..|+..|..=+.+.|.+ = +++..|-+..- ....+ +-+.++.....+.+..
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D-------~--Ve~SNLnRQ~l~~~~di-G~~Kve~a~~~l~~iN 94 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD-------V--FELRNFNRQAGAMMSTL-GRPKAEVLAEMVRDIN 94 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC-------C--cchhccccccCcChhHC-CCcHHHHHHHHHHHHC
Confidence 467899999999999999999999998777776653 2 44444432110 00001 1111111111122222
Q ss_pred ceEEeeccccccccccccccc--cceEEEecCCCC---CCHHHHHHHHhCCceee
Q psy1913 357 VDILVPAAIEKVIRKSNADKV--QAKIIVEAANGP---LTPAAHAMLLKKNVLII 406 (535)
Q Consensus 357 ~DILiPaA~~~~It~~na~~i--~AkiIvEgAN~p---~T~eA~~iL~~rGI~vi 406 (535)
.++=|-+ ...-++++|+..+ .+-+|+++..++ +.....+.-.+.||.++
T Consensus 95 P~v~V~~-~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V 148 (287)
T PRK08223 95 PELEIRA-FPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPAL 148 (287)
T ss_pred CCCEEEE-EecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEE
Confidence 2222221 3345567777665 467888888765 22334455677787664
No 133
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.62 E-value=1.1 Score=48.38 Aligned_cols=28 Identities=21% Similarity=0.231 Sum_probs=26.3
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVa 308 (535)
++|+|.|.|.||..+|..|.+.|..|++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~ 28 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTG 28 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEE
Confidence 3799999999999999999999999988
No 134
>PRK07680 late competence protein ComER; Validated
Probab=93.59 E-value=0.14 Score=51.99 Aligned_cols=107 Identities=17% Similarity=0.144 Sum_probs=66.2
Q ss_pred EEEEEccccHHHHHHHHHHHCCC----eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc
Q psy1913 282 TYIVQGFGNVGFHAARYFRRGRA----KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD 355 (535)
Q Consensus 282 ~VaIQGfGnVG~~~A~~L~e~Ga----kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~ 355 (535)
+|.|.|+|++|..+++.|.+.|. .|+. .| -+.+.+....++. ++.....+ +++ .
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v-~~------------r~~~~~~~~~~~~------~g~~~~~~~~~~~-~ 61 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTI-TN------------RTPAKAYHIKERY------PGIHVAKTIEEVI-S 61 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEE-EC------------CCHHHHHHHHHHc------CCeEEECCHHHHH-H
Confidence 68999999999999999999884 3433 32 4445554444332 12222222 333 5
Q ss_pred cceEEeeccccccccc---ccccccc-ceEEEecCCCCCCHHHHHHHHhCCceeecc
Q psy1913 356 KVDILVPAAIEKVIRK---SNADKVQ-AKIIVEAANGPLTPAAHAMLLKKNVLIIPD 408 (535)
Q Consensus 356 ~~DILiPaA~~~~It~---~na~~i~-AkiIvEgAN~p~T~eA~~iL~~rGI~viPD 408 (535)
+||+++-|.....+.+ +-++.++ -++|+.-+|+-......+.+..+.+.++|-
T Consensus 62 ~aDiVilav~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~~~~~r~~p~ 118 (273)
T PRK07680 62 QSDLIFICVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVPCQVARIIPS 118 (273)
T ss_pred hCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCEEEECCC
Confidence 8999999986554322 1223332 368888887654455556665566778885
No 135
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=93.57 E-value=0.18 Score=51.65 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=73.5
Q ss_pred HHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHC----CC------eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC
Q psy1913 269 MCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRG----RA------KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT 338 (535)
Q Consensus 269 ~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~----Ga------kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~ 338 (535)
++..|. +|+..||+|.|.|..|-.+|++|.+. |. +=+-+.|++|-|++.. .||+.... .+.+....
T Consensus 16 l~~~g~--~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r-~~l~~~~~-~~a~~~~~ 91 (255)
T PF03949_consen 16 LRVTGK--KLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR-EDLNPHKK-PFARKTNP 91 (255)
T ss_dssp HHHHTS---GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT-SSHSHHHH-HHHBSSST
T ss_pred HHHhCC--CHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC-ccCChhhh-hhhccCcc
Confidence 445664 48999999999999999999999886 98 6788899999999887 34543221 22222111
Q ss_pred cccCCCCcccCC-CC-ccccceEEeecc-ccccccccccccccc----eEEEecCCC
Q psy1913 339 IKGYPGTKSAPT-DI-MFDKVDILVPAA-IEKVIRKSNADKVQA----KIIVEAANG 388 (535)
Q Consensus 339 v~~~~~a~~i~~-el-l~~~~DILiPaA-~~~~It~~na~~i~A----kiIvEgAN~ 388 (535)
. ....+- +. -..+.||||=++ .++.+|++-+..+.. .||---+|-
T Consensus 92 ~-----~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNP 143 (255)
T PF03949_consen 92 E-----KDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNP 143 (255)
T ss_dssp T-----T--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSS
T ss_pred c-----ccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCC
Confidence 1 001111 32 256779999999 799999999998853 788888885
No 136
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=93.51 E-value=1.4 Score=45.82 Aligned_cols=132 Identities=17% Similarity=0.186 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHH
Q psy1913 251 TGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH 330 (535)
Q Consensus 251 Tg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~ 330 (535)
-|.|+..+++. .+.+.+++|++|+|.|.|-.++.++..|++.|++=|.|.. =+.+...
T Consensus 107 D~~G~~~~L~~----------~~~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~N------------Rt~~ra~ 164 (283)
T COG0169 107 DGIGFLRALKE----------FGLPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVN------------RTRERAE 164 (283)
T ss_pred CHHHHHHHHHh----------cCCCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEe------------CCHHHHH
Confidence 36787777762 2333356799999999999999999999999974333333 2344444
Q ss_pred HHHHHcCCcccCCCCcccCCCCccc-cceEEeecccccccccc---c--cccc-cceEEEecCCCC-CCHHHHHHHHhCC
Q psy1913 331 TYKITKGTIKGYPGTKSAPTDIMFD-KVDILVPAAIEKVIRKS---N--ADKV-QAKIIVEAANGP-LTPAAHAMLLKKN 402 (535)
Q Consensus 331 ~~~~~~g~v~~~~~a~~i~~ell~~-~~DILiPaA~~~~It~~---n--a~~i-~AkiIvEgAN~p-~T~eA~~iL~~rG 402 (535)
++.+..+....+-....+. ++-.. +.||+|-|+.-+.-..+ . ...+ +..+|.+-.=+| -||=.+. -+++|
T Consensus 165 ~La~~~~~~~~~~~~~~~~-~~~~~~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~TplL~~-A~~~G 242 (283)
T COG0169 165 ELADLFGELGAAVEAAALA-DLEGLEEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVYNPLETPLLRE-ARAQG 242 (283)
T ss_pred HHHHHhhhccccccccccc-ccccccccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEeccCCCCCHHHHH-HHHcC
Confidence 4444333211110111111 12222 69999999875544432 1 2223 467888999888 5776544 47778
Q ss_pred ceee
Q psy1913 403 VLII 406 (535)
Q Consensus 403 I~vi 406 (535)
..++
T Consensus 243 ~~~i 246 (283)
T COG0169 243 AKTI 246 (283)
T ss_pred CeEE
Confidence 6643
No 137
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.48 E-value=0.18 Score=49.42 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=31.0
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD 313 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~ 313 (535)
|+.++|.|.|.|.+|..+|+.|...|..=+.+.|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 567899999999999999999999998666666654
No 138
>PRK06349 homoserine dehydrogenase; Provisional
Probab=93.41 E-value=0.3 Score=53.21 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=28.8
Q ss_pred CcEEEEEccccHHHHHHHHHHHC----------CCeEEEEecCC
Q psy1913 280 NKTYIVQGFGNVGFHAARYFRRG----------RAKCLAIVEHD 313 (535)
Q Consensus 280 g~~VaIQGfGnVG~~~A~~L~e~----------GakVVaVsD~~ 313 (535)
..+|+|.|||+||+.+++.|.+. +.+|++|+|++
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~ 46 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRD 46 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCC
Confidence 36899999999999999988653 46899999875
No 139
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=93.38 E-value=0.24 Score=52.25 Aligned_cols=104 Identities=20% Similarity=0.245 Sum_probs=69.0
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD 355 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~ 355 (535)
++.|+|+.|.|+|.+|+.+|+.++-.|++|+. |++.. . . +.. ++ . +++.++. +++ .
T Consensus 143 ~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y--------~~~~~--~-~-~~~---~~-~------~~~y~~l~ell-~ 199 (324)
T COG1052 143 DLRGKTLGIIGLGRIGQAVARRLKGFGMKVLY--------YDRSP--N-P-EAE---KE-L------GARYVDLDELL-A 199 (324)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhcCCCEEEE--------ECCCC--C-h-HHH---hh-c------CceeccHHHHH-H
Confidence 58999999999999999999999989999987 66665 2 1 111 11 1 1233333 444 4
Q ss_pred cceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-C-HHHHHHHHhCCc
Q psy1913 356 KVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-T-PAAHAMLLKKNV 403 (535)
Q Consensus 356 ~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T-~eA~~iL~~rGI 403 (535)
.+||++-... .+.|+.+-..+++ --+++.-|=|++ . ....+.|++.-|
T Consensus 200 ~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i 255 (324)
T COG1052 200 ESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKI 255 (324)
T ss_pred hCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCc
Confidence 7898887765 3344444444454 378888899985 3 334466776654
No 140
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=93.36 E-value=1.3 Score=45.74 Aligned_cols=130 Identities=14% Similarity=0.063 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHH
Q psy1913 251 TGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH 330 (535)
Q Consensus 251 Tg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~ 330 (535)
-+.|...+++. .+...++++++|.|.|.|.+|+.++..|.+.|++-|.|.+++ .+...
T Consensus 106 D~~G~~~~l~~----------~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt------------~~ka~ 163 (282)
T TIGR01809 106 DWDGIAGALAN----------IGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN------------PDKLS 163 (282)
T ss_pred CHHHHHHHHHh----------hCCccccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC------------HHHHH
Confidence 46787777761 231113689999999999999999999999998766665542 33344
Q ss_pred HHHHHcCCcccCCCCcccCC--CC--ccccceEEeeccccc-cccccccc---------cc-cceEEEecCCCC-CCHHH
Q psy1913 331 TYKITKGTIKGYPGTKSAPT--DI--MFDKVDILVPAAIEK-VIRKSNAD---------KV-QAKIIVEAANGP-LTPAA 394 (535)
Q Consensus 331 ~~~~~~g~v~~~~~a~~i~~--el--l~~~~DILiPaA~~~-~It~~na~---------~i-~AkiIvEgAN~p-~T~eA 394 (535)
+..++.+... ....+.. ++ .-.++||+|-|+.-+ .++.+... ++ ...+|.+..-+| .|+=.
T Consensus 164 ~La~~~~~~~---~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T~ll 240 (282)
T TIGR01809 164 RLVDLGVQVG---VITRLEGDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPTPLV 240 (282)
T ss_pred HHHHHhhhcC---cceeccchhhhhhcccCCCEEEECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCCHHH
Confidence 4433322110 0111111 11 114789999997733 33333221 11 235778888777 46544
Q ss_pred HHHHHhCCceee
Q psy1913 395 HAMLLKKNVLII 406 (535)
Q Consensus 395 ~~iL~~rGI~vi 406 (535)
.. -+++|..++
T Consensus 241 ~~-A~~~G~~~~ 251 (282)
T TIGR01809 241 AI-VSAAGWRVI 251 (282)
T ss_pred HH-HHHCCCEEE
Confidence 33 356776554
No 141
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.32 E-value=0.21 Score=49.71 Aligned_cols=82 Identities=18% Similarity=0.224 Sum_probs=56.7
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCcccc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDK 356 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~ 356 (535)
+++|++|+|.|.|.||..=+++|+..|++|+.||+. + .+++..+.+..+ +.-+. ..+..+.+ .+
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~-----------~-~~el~~~~~~~~-i~~~~--~~~~~~~~-~~ 72 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE-----------F-EPELKALIEEGK-IKWIE--REFDAEDL-DD 72 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC-----------c-cHHHHHHHHhcC-cchhh--cccChhhh-cC
Confidence 478999999999999999999999999999998843 5 577777766543 22111 11222112 23
Q ss_pred ceEEeecccccccccccc
Q psy1913 357 VDILVPAAIEKVIRKSNA 374 (535)
Q Consensus 357 ~DILiPaA~~~~It~~na 374 (535)
+++.|.|+-...++..-+
T Consensus 73 ~~lviaAt~d~~ln~~i~ 90 (210)
T COG1648 73 AFLVIAATDDEELNERIA 90 (210)
T ss_pred ceEEEEeCCCHHHHHHHH
Confidence 888888776656665433
No 142
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.32 E-value=0.42 Score=50.01 Aligned_cols=82 Identities=23% Similarity=0.210 Sum_probs=58.2
Q ss_pred CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHC----CCeEEEEecCCceEeCCCCC
Q psy1913 248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRG----RAKCLAIVEHDTAIVPDKGT 322 (535)
Q Consensus 248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~----GakVVaVsD~~G~iynp~G~ 322 (535)
.+.|..||...++ ..++ +++|++|+|.|= ..||+-+|.+|.++ +|.|.. +.++ +
T Consensus 137 ~PcTp~avi~lL~----------~~~i--~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtv-chs~--------T 195 (297)
T PRK14167 137 KPCTPHGIQKLLA----------AAGV--DTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTV-CHSR--------T 195 (297)
T ss_pred CCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEE-eCCC--------C
Confidence 5889999876666 4566 489999999995 66899999999987 776654 4332 1
Q ss_pred CCCHHHHHHHHHHcCCcccCCCCcccCCCCccccceEEeeccc-cccccccccc
Q psy1913 323 EINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAI-EKVIRKSNAD 375 (535)
Q Consensus 323 dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~-~~~It~~na~ 375 (535)
-| | +-+...+||+|-|+. .+.|+.+.+.
T Consensus 196 -~~---l---------------------~~~~~~ADIvIsAvGkp~~i~~~~ik 224 (297)
T PRK14167 196 -DD---L---------------------AAKTRRADIVVAAAGVPELIDGSMLS 224 (297)
T ss_pred -CC---H---------------------HHHHhhCCEEEEccCCcCccCHHHcC
Confidence 11 1 113357899999887 7777765544
No 143
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.32 E-value=0.57 Score=48.80 Aligned_cols=50 Identities=28% Similarity=0.242 Sum_probs=41.1
Q ss_pred CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHH----CCCeEEE
Q psy1913 247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRR----GRAKCLA 308 (535)
Q Consensus 247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e----~GakVVa 308 (535)
-.+.|..||...++ ..|+ +++|++|+|.|= ..||.-++.+|.+ ++|.|..
T Consensus 136 ~~PcTp~av~~lL~----------~~~i--~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~ 190 (286)
T PRK14184 136 FRPCTPAGVMTLLE----------RYGL--SPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTV 190 (286)
T ss_pred CCCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEE
Confidence 35889999876666 4566 479999999994 6789999999998 7888876
No 144
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.29 E-value=0.66 Score=48.27 Aligned_cols=84 Identities=21% Similarity=0.213 Sum_probs=59.7
Q ss_pred CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCC
Q psy1913 247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEIN 325 (535)
Q Consensus 247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLD 325 (535)
-.+.|..||...++ ..|. +++|++|+|.|- ..||.-+|.+|.++||.|+. +.+. - -|
T Consensus 136 ~~PcTp~avi~lL~----------~~~i--~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVti-chs~-------T--~~ 193 (284)
T PRK14170 136 FVPCTPAGIIELIK----------STGT--QIEGKRAVVIGRSNIVGKPVAQLLLNENATVTI-AHSR-------T--KD 193 (284)
T ss_pred CCCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEE-eCCC-------C--CC
Confidence 36899999876665 4565 589999999995 56899999999999998875 2221 1 11
Q ss_pred HHHHHHHHHHcCCcccCCCCcccCCCCccccceEEeeccc-ccccccccccc
Q psy1913 326 YKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAI-EKVIRKSNADK 376 (535)
Q Consensus 326 i~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~-~~~It~~na~~ 376 (535)
+ .+ +...+||+|-|+. .+.|+.+....
T Consensus 194 l---~~---------------------~~~~ADIvI~AvG~~~~i~~~~vk~ 221 (284)
T PRK14170 194 L---PQ---------------------VAKEADILVVATGLAKFVKKDYIKP 221 (284)
T ss_pred H---HH---------------------HHhhCCEEEEecCCcCccCHHHcCC
Confidence 1 11 2347799999887 67777665543
No 145
>PRK12862 malic enzyme; Reviewed
Probab=93.24 E-value=0.6 Score=54.71 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=86.7
Q ss_pred CchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCe--EEEEecCCceEeCCCCCCCCH
Q psy1913 249 SATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAK--CLAIVEHDTAIVPDKGTEINY 326 (535)
Q Consensus 249 ~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Gak--VVaVsD~~G~iynp~G~dLDi 326 (535)
.-||-=+..++.+++ +..|. +++..||+|.|.|..|..+|++|...|.+ =+-+.|++|.|+.....+++.
T Consensus 170 ~GTa~v~la~l~~a~------~~~~~--~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~ 241 (763)
T PRK12862 170 HGTAIIVAAALLNGL------KLVGK--DIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDP 241 (763)
T ss_pred ccHHHHHHHHHHHHH------HHhCC--ChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccH
Confidence 345554555555443 45664 48999999999999999999999999983 457899999999876311554
Q ss_pred HHHHHHHHHcCCcccCCCCcccCC--CCccccceEEeecccccccccccccccc-ceEEEecCCCC--CCHH
Q psy1913 327 KDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVDILVPAAIEKVIRKSNADKVQ-AKIIVEAANGP--LTPA 393 (535)
Q Consensus 327 ~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~DILiPaA~~~~It~~na~~i~-AkiIvEgAN~p--~T~e 393 (535)
... .+.+.+. ... +.+.. +||||=++.++.+|++-+..+. -.||---||-- +|||
T Consensus 242 ~~~-~~a~~~~----------~~~l~e~~~~-~~v~iG~s~~g~~~~~~v~~M~~~piifalsNP~~E~~p~ 301 (763)
T PRK12862 242 WKA-RYAQKTD----------ARTLAEVIEG-ADVFLGLSAAGVLKPEMVKKMAPRPLIFALANPTPEILPE 301 (763)
T ss_pred HHH-HHhhhcc----------cCCHHHHHcC-CCEEEEcCCCCCCCHHHHHHhccCCEEEeCCCCcccCCHH
Confidence 332 2222210 012 44444 8999999999999999888884 36777777753 4554
No 146
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.16 E-value=0.18 Score=53.46 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=32.6
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD 313 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~ 313 (535)
|++++|+|.|.|.+|.++|+.|.+.|..-+.|.|.+
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 567899999999999999999999999778888865
No 147
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.12 E-value=2.6 Score=46.89 Aligned_cols=210 Identities=11% Similarity=0.108 Sum_probs=109.5
Q ss_pred cEEEEEccccHHHHHHHHHHHCC--CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcc-----cC----CCC-ccc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGR--AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIK-----GY----PGT-KSA 348 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~G--akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~-----~~----~~a-~~i 348 (535)
++|+|.|.|.||..+|-.|++.| .+|+++ |+|.+.+.++.+..-.+. .+ .+. -.+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gv-------------D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~ 68 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVV-------------DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF 68 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEE-------------ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE
Confidence 57999999999999999999984 789984 355555444432211000 00 000 011
Q ss_pred CCCCc--cccceEEeecccccccc----cccccc----------c------cceEEEecCCCC-CCHHHHHHHHhC--C-
Q psy1913 349 PTDIM--FDKVDILVPAAIEKVIR----KSNADK----------V------QAKIIVEAANGP-LTPAAHAMLLKK--N- 402 (535)
Q Consensus 349 ~~ell--~~~~DILiPaA~~~~It----~~na~~----------i------~AkiIvEgAN~p-~T~eA~~iL~~r--G- 402 (535)
+.++- -.+||+++-|-..-.-. .++... | ..-||.+..-.| +|.+....|.++ |
T Consensus 69 t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~ 148 (473)
T PLN02353 69 STDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGI 148 (473)
T ss_pred EcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCC
Confidence 11221 25899999886533311 011111 1 135677777777 567777777764 4
Q ss_pred ---ceeeccccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccc
Q psy1913 403 ---VLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNAT 479 (535)
Q Consensus 403 ---I~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~ 479 (535)
|.+-|.++. -|=.+-.+ .+...+--|-.+.. +.++..+.+.+++..+.+ ...-..++...++.++
T Consensus 149 ~f~v~~~PErl~-~G~a~~d~----~~p~riViG~~~~~-~~~~a~~~~~~lY~~~~~---~~~i~~~s~~~AE~~K--- 216 (473)
T PLN02353 149 NFQILSNPEFLA-EGTAIEDL----FKPDRVLIGGRETP-EGQKAVQALKDVYAHWVP---EERIITTNLWSAELSK--- 216 (473)
T ss_pred CeEEEECCCccC-CCCccccc----CCCCEEEEccCCch-hhHHHHHHHHHHHHHhhc---CCCEEecCHHHHHHHH---
Confidence 789999875 44333322 23222211211100 001223444555554321 0011123444555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Q psy1913 480 EKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSA 520 (535)
Q Consensus 480 e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~a 520 (535)
++..-....-..-.+++..+|++.+ +|.++..-..+
T Consensus 217 ---~~eN~~ra~~Iaf~NEla~lce~~g--iD~~eV~~~~~ 252 (473)
T PLN02353 217 ---LAANAFLAQRISSVNAMSALCEATG--ADVSQVSHAVG 252 (473)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHhC
Confidence 4445555555566678888888885 67766554433
No 148
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.11 E-value=0.41 Score=49.87 Aligned_cols=50 Identities=26% Similarity=0.258 Sum_probs=41.7
Q ss_pred CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEE
Q psy1913 247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQG-FGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVa 308 (535)
-.+.|.+||...++ ..|+ +++|++|+|.| ...||.-+|.+|.++||.|+.
T Consensus 134 ~~PcTp~avi~lL~----------~~~i--~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVti 184 (287)
T PRK14173 134 LEPCTPAGVVRLLK----------HYGI--PLAGKEVVVVGRSNIVGKPLAALLLREDATVTL 184 (287)
T ss_pred CCCCCHHHHHHHHH----------HcCC--CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEE
Confidence 46899999876666 4566 58999999999 567899999999999998764
No 149
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=93.11 E-value=0.41 Score=50.09 Aligned_cols=50 Identities=18% Similarity=0.234 Sum_probs=41.5
Q ss_pred CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEE
Q psy1913 247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVa 308 (535)
-.+.|..||...++ ..|+ +++|++|+|.|= ..||.-+|.+|.++||.|+.
T Consensus 146 ~~PcTp~avi~lL~----------~~~i--~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtv 196 (299)
T PLN02516 146 FLPCTPKGCLELLS----------RSGI--PIKGKKAVVVGRSNIVGLPVSLLLLKADATVTV 196 (299)
T ss_pred CCCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCccchHHHHHHHHHCCCEEEE
Confidence 46899999876665 4566 589999999995 56899999999999998776
No 150
>PLN00203 glutamyl-tRNA reductase
Probab=93.10 E-value=0.29 Score=54.88 Aligned_cols=104 Identities=9% Similarity=0.124 Sum_probs=68.1
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF 354 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~ 354 (535)
++.+++|.|.|.|.+|..+++.|...|++-|.|.+ -+.+.+..+..+.+.+. . ....++. +. -
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~n------------Rs~era~~La~~~~g~~-i-~~~~~~dl~~a-l 327 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVN------------RSEERVAALREEFPDVE-I-IYKPLDEMLAC-A 327 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEe------------CCHHHHHHHHHHhCCCc-e-EeecHhhHHHH-H
Confidence 47899999999999999999999999975343332 33455555555432110 0 0011111 22 2
Q ss_pred ccceEEeecc--cccccccccccccc--------ceEEEecCCCC-CCHHHH
Q psy1913 355 DKVDILVPAA--IEKVIRKSNADKVQ--------AKIIVEAANGP-LTPAAH 395 (535)
Q Consensus 355 ~~~DILiPaA--~~~~It~~na~~i~--------AkiIvEgAN~p-~T~eA~ 395 (535)
.+|||+|-|+ ...+|+.+.+..+. -++++.-|... +.|+..
T Consensus 328 ~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v~ 379 (519)
T PLN00203 328 AEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACVS 379 (519)
T ss_pred hcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCccccc
Confidence 5899999886 46678888777653 24899999876 666544
No 151
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.07 E-value=0.045 Score=55.16 Aligned_cols=119 Identities=14% Similarity=0.294 Sum_probs=64.6
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCccccc
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKV 357 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~ 357 (535)
|++.+|+|.|.|-+|..+|+.|...|..=+.+.|.+ = ++...|-+..--.-.-.+-+.++.....+.+...
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D-------~--ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp 92 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD-------T--VSLSNLQRQVLHSDANIGQPKVESAKDALTQINP 92 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC-------c--ccccCcccceeeeHhhCCCcHHHHHHHHHHHHCC
Confidence 467899999999999999999999998767666643 1 3332222110000000011111111101222222
Q ss_pred eEEeeccccccccccccccc--cceEEEecCCCCCC-HHHHHHHHhCCceee
Q psy1913 358 DILVPAAIEKVIRKSNADKV--QAKIIVEAANGPLT-PAAHAMLLKKNVLII 406 (535)
Q Consensus 358 DILiPaA~~~~It~~na~~i--~AkiIvEgAN~p~T-~eA~~iL~~rGI~vi 406 (535)
++-|- +....++.+|+..+ .+-+|+.+.-++.+ ....+...+.||.++
T Consensus 93 ~v~i~-~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v 143 (240)
T TIGR02355 93 HIAIN-PINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLV 143 (240)
T ss_pred CcEEE-EEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEE
Confidence 22222 22345566666554 46788877766633 344566788888775
No 152
>PRK08328 hypothetical protein; Provisional
Probab=93.07 E-value=0.08 Score=52.98 Aligned_cols=119 Identities=17% Similarity=0.206 Sum_probs=67.6
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHc-CCcccCCCCcccCCCCcccc
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK-GTIKGYPGTKSAPTDIMFDK 356 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~-g~v~~~~~a~~i~~ell~~~ 356 (535)
|++++|+|.|.|-+|..+|+.|...|..=+.|.|.+ = ++...|-+..--. ..+...+.++.....+....
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D-------~--ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~n 95 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ-------T--PELSNLNRQILHWEEDLGKNPKPLSAKWKLERFN 95 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC-------c--cChhhhccccccChhhcCchHHHHHHHHHHHHhC
Confidence 457899999999999999999999998766666542 2 4444443211000 00000000100000123334
Q ss_pred ceEEeeccccccccccccccc--cceEEEecCCCCCCH-HHHHHHHhCCceee
Q psy1913 357 VDILVPAAIEKVIRKSNADKV--QAKIIVEAANGPLTP-AAHAMLLKKNVLII 406 (535)
Q Consensus 357 ~DILiPaA~~~~It~~na~~i--~AkiIvEgAN~p~T~-eA~~iL~~rGI~vi 406 (535)
.||-|-+- ...++++|+..+ .+-+|+.+.-++.|. ...++..++||.++
T Consensus 96 p~v~v~~~-~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i 147 (231)
T PRK08328 96 SDIKIETF-VGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLV 147 (231)
T ss_pred CCCEEEEE-eccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 45555552 334677776554 467888877555443 34456678898775
No 153
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.05 E-value=0.38 Score=51.55 Aligned_cols=51 Identities=22% Similarity=0.199 Sum_probs=41.7
Q ss_pred CCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEE
Q psy1913 246 GRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQG-FGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 246 gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVa 308 (535)
+-.+.|..||...++ ..+. +++|++|+|.| ...||.-+|.+|.+++|.|..
T Consensus 209 ~f~PCTp~avielL~----------~y~i--~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTi 260 (364)
T PLN02616 209 LFVPCTPKGCIELLH----------RYNV--EIKGKRAVVIGRSNIVGMPAALLLQREDATVSI 260 (364)
T ss_pred CCCCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCccccHHHHHHHHHCCCeEEE
Confidence 346899999875555 4565 58999999999 567899999999999998865
No 154
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.05 E-value=0.071 Score=53.63 Aligned_cols=119 Identities=20% Similarity=0.250 Sum_probs=61.7
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCccccc
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKV 357 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~ 357 (535)
|+.++|.|.|.|.||.++|+.|.+.|..=+.+.|. += ++...|-+..-...+-.+-+.++.+...+.....
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~-------D~--V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP 79 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDF-------DV--VCVSNLNRQIHALLSTVGKPKVEVMAERIRDINP 79 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECC-------CE--ECchhhcchhCcChhhCCCcHHHHHHHHHHHHCC
Confidence 35789999999999999999999999755555543 32 4444443321100000011111111111222222
Q ss_pred eEEeeccccccccccccccc---cceEEEecCCCC-CCHHHHHHHHhCCceee
Q psy1913 358 DILVPAAIEKVIRKSNADKV---QAKIIVEAANGP-LTPAAHAMLLKKNVLII 406 (535)
Q Consensus 358 DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p-~T~eA~~iL~~rGI~vi 406 (535)
++-|-+ ....++++|...+ +.-+|+.+.-.+ ..-...+..++++|.++
T Consensus 80 ~~~V~~-~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I 131 (231)
T cd00755 80 ECEVDA-VEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVI 131 (231)
T ss_pred CcEEEE-eeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEE
Confidence 222221 1234455555544 245777764443 33345566788888775
No 155
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=93.03 E-value=0.12 Score=54.88 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=29.7
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa 308 (535)
.|++++|+|+|+|++|..+|+.|.+.|.+|+.
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv 45 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDSGVDVVV 45 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEE
Confidence 47899999999999999999999999998875
No 156
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.01 E-value=0.047 Score=56.17 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=30.4
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD 313 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~ 313 (535)
|++.+|+|.|.|.||.++|+.|.+.|..=+.|.|.+
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 467899999999999999999999996556666643
No 157
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.96 E-value=0.42 Score=49.63 Aligned_cols=49 Identities=22% Similarity=0.175 Sum_probs=40.8
Q ss_pred CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEE
Q psy1913 248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVa 308 (535)
.+.|.+||...++ ..++ +++|++|+|.|= ..||.-+|.+|.+++|.|..
T Consensus 137 ~PcTp~avi~ll~----------~~~i--~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVti 186 (282)
T PRK14182 137 RPCTPAGVMRMLD----------EARV--DPKGKRALVVGRSNIVGKPMAMMLLERHATVTI 186 (282)
T ss_pred CCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEE
Confidence 5889999876666 4566 479999999995 66899999999999997765
No 158
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.90 E-value=0.54 Score=49.00 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=40.8
Q ss_pred CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEE
Q psy1913 247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVa 308 (535)
-.+.|..||..-++ ..+. +++||+|+|.|= ..||.-++.+|.++||.|+.
T Consensus 138 ~~PcTp~av~~lL~----------~y~i--~l~GK~vvViGrS~iVGkPla~lL~~~~ATVti 188 (288)
T PRK14171 138 FIPCTALGCLAVIK----------KYEP--NLTGKNVVIIGRSNIVGKPLSALLLKENCSVTI 188 (288)
T ss_pred CcCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEE
Confidence 36889999876655 4565 589999999995 56899999999999998764
No 159
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.82 E-value=0.22 Score=51.03 Aligned_cols=113 Identities=17% Similarity=0.262 Sum_probs=74.4
Q ss_pred cEEEEEccccHHHHHHHHHHHCCC----eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRA----KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF 354 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~Ga----kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~ 354 (535)
++|.|+|+||+|..+++-|.+.|. .|++ +|.+.+.+....++.| .+..++ ++.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v-------------~~r~~~~~~~l~~~~g-------~~~~~~~~e~~- 61 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIIC-------------SDLNVSNLKNASDKYG-------ITITTNNNEVA- 61 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEE-------------ECCCHHHHHHHHHhcC-------cEEeCCcHHHH-
Confidence 479999999999999999999884 4555 3355666666555443 222222 343
Q ss_pred ccceEEeeccccccccc---cccccccc-eEEEecCCCCCCHHHHHHHHh--CCceeecccccccc
Q psy1913 355 DKVDILVPAAIEKVIRK---SNADKVQA-KIIVEAANGPLTPAAHAMLLK--KNVLIIPDIFANAG 414 (535)
Q Consensus 355 ~~~DILiPaA~~~~It~---~na~~i~A-kiIvEgAN~p~T~eA~~iL~~--rGI~viPD~laNaG 414 (535)
.+|||+|-|.....+.+ +..+.++. ++|+.-+-|-......+.|.. +=+.++|-.-+-.|
T Consensus 62 ~~aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg 127 (272)
T PRK12491 62 NSADILILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVG 127 (272)
T ss_pred hhCCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHc
Confidence 48999999987654433 22223333 588888888777777777743 33567887765544
No 160
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.80 E-value=0.14 Score=50.42 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=31.5
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs 310 (535)
+++|++|.|.|.|.||..-++.|.+.|++|+.|+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvs 39 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIA 39 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEc
Confidence 3689999999999999999999999999998876
No 161
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.66 E-value=0.091 Score=53.06 Aligned_cols=36 Identities=25% Similarity=0.545 Sum_probs=31.4
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD 313 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~ 313 (535)
|+.++|.|.|.|.+|..+|+.|...|..=+.|.|.+
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 467899999999999999999999998767777654
No 162
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.63 E-value=0.28 Score=53.13 Aligned_cols=129 Identities=12% Similarity=0.070 Sum_probs=81.9
Q ss_pred cEEEEEccccHHHHHHHHHHHCC-CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC-cccC-CCCcccCC--CCccc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGR-AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT-IKGY-PGTKSAPT--DIMFD 355 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~G-akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~-v~~~-~~a~~i~~--ell~~ 355 (535)
++|+|.|.|+||+.+|+.|++.| ..|.. +|-..+.+.+.....+. +.-. .++...+. +++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~i-------------AdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~- 67 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTI-------------ADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK- 67 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEE-------------EeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh-
Confidence 57999999999999999999999 77776 45667777777665422 1100 01111111 3443
Q ss_pred cceEEeecccccccccccc-ccccc-eEEEecCCCC-CCHHHHHHHHhCCceeeccccccccCcchhhHhhhh
Q psy1913 356 KVDILVPAAIEKVIRKSNA-DKVQA-KIIVEAANGP-LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLK 425 (535)
Q Consensus 356 ~~DILiPaA~~~~It~~na-~~i~A-kiIvEgAN~p-~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~q 425 (535)
+.|+.|-|++..+ +..-+ .-+++ .-++.-+|.. ..-+-++...+.||+++|+. --+=|++..|..+..
T Consensus 68 ~~d~VIn~~p~~~-~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~-G~dPGi~nv~a~~a~ 138 (389)
T COG1748 68 DFDLVINAAPPFV-DLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGC-GFDPGITNVLAAYAA 138 (389)
T ss_pred cCCEEEEeCCchh-hHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEccc-CcCcchHHHHHHHHH
Confidence 4499999987553 22111 11122 3355666665 33566678899999999985 455578888777654
No 163
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=92.55 E-value=1.7 Score=48.84 Aligned_cols=136 Identities=14% Similarity=0.146 Sum_probs=76.5
Q ss_pred chHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHH
Q psy1913 250 ATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDL 329 (535)
Q Consensus 250 aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L 329 (535)
--+.|+..+++..+.........+ .++++++|.|.|.|.+|+.++..|.+.|++|+. .+ -+.+..
T Consensus 351 TD~~G~~~~l~~~~~~~~~~~~~~--~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i-~n------------R~~e~a 415 (529)
T PLN02520 351 TDYIGAISAIEDGLRASGSSPASG--SPLAGKLFVVIGAGGAGKALAYGAKEKGARVVI-AN------------RTYERA 415 (529)
T ss_pred ccHHHHHHHHHhhhcccccccccc--cCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEE-Ec------------CCHHHH
Confidence 347888888874321000000012 247899999999999999999999999998765 33 344555
Q ss_pred HHHHHHcCCcccCCCCcccCC--CCccccceEEeeccccccccccc-----cccc-cceEEEecCCCC-CCHHHHHHHHh
Q psy1913 330 HTYKITKGTIKGYPGTKSAPT--DIMFDKVDILVPAAIEKVIRKSN-----ADKV-QAKIIVEAANGP-LTPAAHAMLLK 400 (535)
Q Consensus 330 ~~~~~~~g~v~~~~~a~~i~~--ell~~~~DILiPaA~~~~It~~n-----a~~i-~AkiIvEgAN~p-~T~eA~~iL~~ 400 (535)
.+..++.+. ....++. +.+..++||+|-|+.-+.-...+ ...+ ...+|.+-.=+| .|+=... -++
T Consensus 416 ~~la~~l~~-----~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l~~~~~v~D~vY~P~~T~ll~~-A~~ 489 (529)
T PLN02520 416 KELADAVGG-----QALTLADLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSLVFDAVYTPKITRLLRE-AEE 489 (529)
T ss_pred HHHHHHhCC-----ceeeHhHhhhhccccCeEEEecccCCCCCCCCCCcccHhhCCCCCEEEEeccCCCcCHHHHH-HHH
Confidence 554443221 0011111 22334689999777644322111 1112 246788888887 4654433 355
Q ss_pred CCceee
Q psy1913 401 KNVLII 406 (535)
Q Consensus 401 rGI~vi 406 (535)
+|..++
T Consensus 490 ~G~~~~ 495 (529)
T PLN02520 490 SGAIIV 495 (529)
T ss_pred CCCeEe
Confidence 665443
No 164
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.47 E-value=0.23 Score=50.67 Aligned_cols=69 Identities=10% Similarity=0.099 Sum_probs=47.2
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceE
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDI 359 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DI 359 (535)
++|.|.|.|.+|..+|..|.+.|.+|++ .|.+.+.+.+..+. |.+.. ..+. +. ..+||+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~-------------~d~~~~~~~~a~~~-g~~~~-----~~~~~~~-~~~aDl 60 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYG-------------VSRRESTCERAIER-GLVDE-----ASTDLSL-LKDCDL 60 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHC-CCccc-----ccCCHhH-hcCCCE
Confidence 3799999999999999999999999887 33555555554432 32211 1112 32 258999
Q ss_pred Eeeccccccc
Q psy1913 360 LVPAAIEKVI 369 (535)
Q Consensus 360 LiPaA~~~~I 369 (535)
+|-|.....+
T Consensus 61 Vilavp~~~~ 70 (279)
T PRK07417 61 VILALPIGLL 70 (279)
T ss_pred EEEcCCHHHH
Confidence 9999886554
No 165
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.44 E-value=0.15 Score=49.05 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=24.8
Q ss_pred EEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913 282 TYIVQGFGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 282 ~VaIQGfGnVG~~~A~~L~e~GakVVa 308 (535)
+|+|.|.|..|..+|..++..|..|+-
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l 27 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTL 27 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEE
Confidence 689999999999999999999999987
No 166
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.42 E-value=0.31 Score=48.39 Aligned_cols=36 Identities=31% Similarity=0.506 Sum_probs=31.8
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD 313 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~ 313 (535)
|+.++|+|.|.|.+|.++|+.|...|..-+.+.|.+
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 467899999999999999999999999777777754
No 167
>PLN02256 arogenate dehydrogenase
Probab=92.42 E-value=0.17 Score=52.80 Aligned_cols=87 Identities=15% Similarity=0.178 Sum_probs=54.1
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD 355 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~ 355 (535)
.++++|+|.|+|++|+.+|+.|.+.|.+|+++..+ - . .+...+.| ....++ +++..
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~--------~-----~--~~~a~~~g-------v~~~~~~~e~~~~ 91 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRS--------D-----Y--SDIAAELG-------VSFFRDPDDFCEE 91 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECc--------c-----H--HHHHHHcC-------CeeeCCHHHHhhC
Confidence 36789999999999999999999999888874321 1 1 12222332 111222 34334
Q ss_pred cceEEeeccccccccccccccc-----c-ceEEEecCC
Q psy1913 356 KVDILVPAAIEKVIRKSNADKV-----Q-AKIIVEAAN 387 (535)
Q Consensus 356 ~~DILiPaA~~~~It~~na~~i-----~-AkiIvEgAN 387 (535)
+||++|-|.....+ .+-+.++ + -.+|++-+.
T Consensus 92 ~aDvVilavp~~~~-~~vl~~l~~~~l~~~~iviDv~S 128 (304)
T PLN02256 92 HPDVVLLCTSILST-EAVLRSLPLQRLKRSTLFVDVLS 128 (304)
T ss_pred CCCEEEEecCHHHH-HHHHHhhhhhccCCCCEEEecCC
Confidence 79999999875543 2322333 1 246777666
No 168
>PRK12861 malic enzyme; Reviewed
Probab=92.37 E-value=1.1 Score=52.49 Aligned_cols=172 Identities=10% Similarity=0.139 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhccCccCCCCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHH
Q psy1913 179 RITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTA 258 (535)
Q Consensus 179 r~~r~f~~~L~~~~~iGp~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~ 258 (535)
.+. +|+..+.+. | | + |-=+|+.... ---|.++|+..... -|+-. --.-||-=+..+
T Consensus 120 ~~v-~~v~a~~~~-f-g-~--i~lED~~~p~--~f~il~~~~~~~~i------pvf~D----------D~qGTa~v~lA~ 175 (764)
T PRK12861 120 KLV-DIIAGLEPT-F-G-G--INLEDIKAPE--CFTVERKLRERMKI------PVFHD----------DQHGTAITVSAA 175 (764)
T ss_pred HHH-HHHHHHHhh-c-C-C--ceeeeccCch--HHHHHHHHHhcCCC------Ceecc----------ccchHHHHHHHH
Confidence 456 888888863 3 2 2 4556776543 22456777653221 11211 123355444555
Q ss_pred HHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCe--EEEEecCCceEeCCCCCCCCHHHHHHHHHHc
Q psy1913 259 AEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAK--CLAIVEHDTAIVPDKGTEINYKDLHTYKITK 336 (535)
Q Consensus 259 i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Gak--VVaVsD~~G~iynp~G~dLDi~~L~~~~~~~ 336 (535)
+.+++ +..|. +++..||+|.|.|..|..++++|.+.|.+ =+-+.|++|.|+.....+++.... .+.+.+
T Consensus 176 llnal------~~~gk--~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~-~~a~~~ 246 (764)
T PRK12861 176 FINGL------KVVGK--SIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKE-RFAQET 246 (764)
T ss_pred HHHHH------HHhCC--ChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHH-HHHhhc
Confidence 55443 45564 48999999999999999999999999984 357899999999876411553332 233221
Q ss_pred CCcccCCCCcccCC-CCccccceEEeeccccccccccccccccc-eEEEecCCCC--CCHH
Q psy1913 337 GTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKVQA-KIIVEAANGP--LTPA 393 (535)
Q Consensus 337 g~v~~~~~a~~i~~-ell~~~~DILiPaA~~~~It~~na~~i~A-kiIvEgAN~p--~T~e 393 (535)
. . -+- +.+. .+||||=++.++++|++-+..+.. .||---||-- +|||
T Consensus 247 ~-------~--~~L~eai~-~advliG~S~~g~ft~e~v~~Ma~~PIIFaLsNPtpE~~pe 297 (764)
T PRK12861 247 D-------A--RTLAEVIG-GADVFLGLSAGGVLKAEMLKAMAARPLILALANPTPEIFPE 297 (764)
T ss_pred C-------C--CCHHHHHh-cCCEEEEcCCCCCCCHHHHHHhccCCEEEECCCCCccCCHH
Confidence 0 0 011 3443 369999999999999999888844 6777777743 4665
No 169
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.34 E-value=0.35 Score=49.51 Aligned_cols=28 Identities=25% Similarity=0.152 Sum_probs=26.5
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVa 308 (535)
++|+|.|.|.+|..+|..|+..|..|+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l 32 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLL 32 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEE
Confidence 5899999999999999999999999887
No 170
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=92.30 E-value=0.24 Score=52.58 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=31.6
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD 313 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~ 313 (535)
|+.++|+|.|.|.+|..+|+.|.+.|..=+.|.|.+
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 467899999999999999999999999777777764
No 171
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=92.13 E-value=0.27 Score=55.83 Aligned_cols=111 Identities=16% Similarity=0.219 Sum_probs=72.7
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCc----ccc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIM----FDK 356 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell----~~~ 356 (535)
.+|+|.|||.+|+.+++.|.+.|..+++ -|.|++.+.+.++ .|.-.-|-+++ +.++| -.+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvv-------------ID~d~~~v~~~~~-~g~~v~~GDat--~~~~L~~agi~~ 464 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITV-------------LERDISAVNLMRK-YGYKVYYGDAT--QLELLRAAGAEK 464 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEE-------------EECCHHHHHHHHh-CCCeEEEeeCC--CHHHHHhcCCcc
Confidence 5899999999999999999999999988 4577777776654 33211111121 11333 258
Q ss_pred ceEEeecccccccccc---ccccc--cceEEEecCCCCCCHHHHHHHHhCCce-eeccccc
Q psy1913 357 VDILVPAAIEKVIRKS---NADKV--QAKIIVEAANGPLTPAAHAMLLKKNVL-IIPDIFA 411 (535)
Q Consensus 357 ~DILiPaA~~~~It~~---na~~i--~AkiIvEgAN~p~T~eA~~iL~~rGI~-viPD~la 411 (535)
||++|-|.-....|.. .+.+. ..++|+=+.| ++..+.|++.|+. ++|+-+-
T Consensus 465 A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~----~~~~~~L~~~Ga~~vv~e~~e 521 (601)
T PRK03659 465 AEAIVITCNEPEDTMKIVELCQQHFPHLHILARARG----RVEAHELLQAGVTQFSRETFS 521 (601)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCC----HHHHHHHHhCCCCEEEccHHH
Confidence 9988877765433322 23333 3577775543 6777889999986 4576543
No 172
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=92.07 E-value=0.4 Score=48.97 Aligned_cols=110 Identities=13% Similarity=0.163 Sum_probs=63.9
Q ss_pred cEEEEEc-cccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccc
Q psy1913 281 KTYIVQG-FGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKV 357 (535)
Q Consensus 281 ~~VaIQG-fGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~ 357 (535)
.+|+|.| +|.+|+.+++.+.+ .+++++++.|+...-. .| -|..++.... .+ +....++ +-+..++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~--~~--~~~~~~~~~~-------~~-gv~~~~d~~~l~~~~ 69 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL--QG--TDAGELAGIG-------KV-GVPVTDDLEAVETDP 69 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--cC--CCHHHhcCcC-------cC-CceeeCCHHHhcCCC
Confidence 4899999 79999999999986 6899999998532211 13 3333322110 00 1222233 2234579
Q ss_pred eEEeeccccccccccccccc---cceEEEecCCCCCCHH-HHHH---HHhCCcee
Q psy1913 358 DILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPA-AHAM---LLKKNVLI 405 (535)
Q Consensus 358 DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~e-A~~i---L~~rGI~v 405 (535)
||+|-|+.+.. +.+++... ...+|+|-- + .|++ ++++ -++.|+.+
T Consensus 70 DvVIdfT~p~~-~~~~~~~al~~g~~vVigtt-g-~~~e~~~~l~~aA~~~g~~v 121 (266)
T TIGR00036 70 DVLIDFTTPEG-VLNHLKFALEHGVRLVVGTT-G-FSEEDKQELADLAEKAGIAA 121 (266)
T ss_pred CEEEECCChHH-HHHHHHHHHHCCCCEEEECC-C-CCHHHHHHHHHHHhcCCccE
Confidence 99999995443 34444333 457887764 3 4553 3333 24545444
No 173
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.05 E-value=0.23 Score=48.10 Aligned_cols=116 Identities=18% Similarity=0.271 Sum_probs=60.0
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCc------------cc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTK------------SA 348 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~------------~i 348 (535)
++|+|.|.|-||.-+|-.|++.|.+|++ .|+|.+.+..+.+..-.+.. |+-. ..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g-------------~D~~~~~v~~l~~g~~p~~E-~~l~~ll~~~~~~~~l~~ 66 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIG-------------VDIDEEKVEALNNGELPIYE-PGLDELLKENVSAGRLRA 66 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEE-------------E-S-HHHHHHHHTTSSSS-C-TTHHHHHHHHHHTTSEEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEE-------------EeCChHHHHHHhhccccccc-cchhhhhccccccccchh
Confidence 5899999999999999999999999999 66777766665432211110 1100 01
Q ss_pred CCCCc--cccceEEeeccccccccccccccc----------------cceEEEecCCCC-CCH-HHHHHHHhCC------
Q psy1913 349 PTDIM--FDKVDILVPAAIEKVIRKSNADKV----------------QAKIIVEAANGP-LTP-AAHAMLLKKN------ 402 (535)
Q Consensus 349 ~~ell--~~~~DILiPaA~~~~It~~na~~i----------------~AkiIvEgAN~p-~T~-eA~~iL~~rG------ 402 (535)
+.++- -.+||+++-|-....-. ++...+ .+-+|.+..=.| +|. ....+|++.+
T Consensus 67 t~~~~~ai~~adv~~I~VpTP~~~-~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f 145 (185)
T PF03721_consen 67 TTDIEEAIKDADVVFICVPTPSDE-DGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDF 145 (185)
T ss_dssp ESEHHHHHHH-SEEEE----EBET-TTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCE
T ss_pred hhhhhhhhhccceEEEecCCCccc-cCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCC
Confidence 11111 25799999887633322 222111 135566666666 555 4667888755
Q ss_pred -ceeeccccc
Q psy1913 403 -VLIIPDIFA 411 (535)
Q Consensus 403 -I~viPD~la 411 (535)
+.+.|+++.
T Consensus 146 ~la~~PErl~ 155 (185)
T PF03721_consen 146 HLAYSPERLR 155 (185)
T ss_dssp EEEE------
T ss_pred eEEECCCccC
Confidence 678888765
No 174
>PRK08605 D-lactate dehydrogenase; Validated
Probab=92.03 E-value=0.44 Score=50.22 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=64.4
Q ss_pred CCCCcEEEEEccccHHHHHHHHH-HHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYF-RRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM 353 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L-~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell 353 (535)
.|.|++|.|.|+|++|+.+|+.| ...|.+|++ ||+.. .... .. ..+..+. +++
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~--------~d~~~-----~~~~---~~--------~~~~~~~l~ell 198 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVA--------YDPFP-----NAKA---AT--------YVDYKDTIEEAV 198 (332)
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEE--------ECCCc-----cHhH---Hh--------hccccCCHHHHH
Confidence 47899999999999999999999 457899987 34332 1110 00 0111222 343
Q ss_pred cccceEEeecccccccccc-----cccccc-ceEEEecCCCCC--CHHHHHHHHhCCc
Q psy1913 354 FDKVDILVPAAIEKVIRKS-----NADKVQ-AKIIVEAANGPL--TPAAHAMLLKKNV 403 (535)
Q Consensus 354 ~~~~DILiPaA~~~~It~~-----na~~i~-AkiIvEgAN~p~--T~eA~~iL~~rGI 403 (535)
..||+++-|......|.. ....++ -.+++..+-+.+ +....+.|.+..|
T Consensus 199 -~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i 255 (332)
T PRK08605 199 -EGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLI 255 (332)
T ss_pred -HhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCe
Confidence 479999999775544432 233343 358888888884 3444456665554
No 175
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.98 E-value=1.3 Score=46.40 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=39.5
Q ss_pred CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHH----CCCeEEE
Q psy1913 247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRR----GRAKCLA 308 (535)
Q Consensus 247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e----~GakVVa 308 (535)
-.+.|..||...++ ..++ +++|++|+|.|= ..||+-+|.+|.+ .++.|..
T Consensus 138 ~~PcTp~ail~ll~----------~y~i--~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~ 192 (295)
T PRK14174 138 FVSCTPYGILELLG----------RYNI--ETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTI 192 (295)
T ss_pred cCCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEE
Confidence 36899999865544 4565 589999999995 6689999999987 6887765
No 176
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=91.96 E-value=1.3 Score=47.11 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=27.7
Q ss_pred cEEEEEccccHHHHHHHHHHHC----CCeEEEEecC
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRG----RAKCLAIVEH 312 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~----GakVVaVsD~ 312 (535)
.+|+|-|||-||+.+.+.|.+. ..+||||-|.
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~ 37 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL 37 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC
Confidence 4799999999999999999874 5789998763
No 177
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.95 E-value=0.76 Score=49.66 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=29.3
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa 308 (535)
+++++|+|.|.|.+|..+|+.|++.|++|++
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~ 33 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVIL 33 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 5789999999999999999999999999887
No 178
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.91 E-value=0.65 Score=48.25 Aligned_cols=50 Identities=26% Similarity=0.330 Sum_probs=41.6
Q ss_pred CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEE
Q psy1913 247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVa 308 (535)
-.+.|..||...++ ..|. +++|++|+|.|= ..||.-+|.+|.++||.|+.
T Consensus 137 ~~PcTp~aii~lL~----------~y~i--~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~ 187 (282)
T PRK14180 137 LESCTPKGIMTMLR----------EYGI--KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTT 187 (282)
T ss_pred cCCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEE
Confidence 36889999887666 4565 589999999995 67899999999999998865
No 179
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.86 E-value=0.42 Score=53.48 Aligned_cols=93 Identities=20% Similarity=0.236 Sum_probs=57.8
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC-cccCCC----------Cc
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT-IKGYPG----------TK 346 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~-v~~~~~----------a~ 346 (535)
+.+.+|+|.|+|.+|..++..+...|++|++ .|.+.+.+...+. .|. ...++. ++
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v-------------~d~~~~rle~a~~-lGa~~v~v~~~e~g~~~~gYa~ 227 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRA-------------FDTRPEVKEQVQS-MGAEFLELDFKEEGGSGDGYAK 227 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEE-------------EeCCHHHHHHHHH-cCCeEEecccccccccccccee
Confidence 4578999999999999999999999999777 3455555544333 331 101110 22
Q ss_pred ccCC-------CCc---cccceEEeeccc------cccccccccccccc-eEEEe
Q psy1913 347 SAPT-------DIM---FDKVDILVPAAI------EKVIRKSNADKVQA-KIIVE 384 (535)
Q Consensus 347 ~i~~-------ell---~~~~DILiPaA~------~~~It~~na~~i~A-kiIvE 384 (535)
.++. +++ ..++||+|-|++ +..||.+-...++. .+|+.
T Consensus 228 ~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 228 VMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred ecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 2222 112 257999999983 22477777777753 34443
No 180
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=91.76 E-value=0.27 Score=48.42 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=55.9
Q ss_pred cEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC-c--ccCCC-CcccCC-CCcc
Q psy1913 281 KTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT-I--KGYPG-TKSAPT-DIMF 354 (535)
Q Consensus 281 ~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~-v--~~~~~-a~~i~~-ell~ 354 (535)
++|.|.| .|++|..+++.|.+.|..|+.+ + -+.+.+.+....... + .++.. ....+. +.+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~-~------------r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~- 66 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIG-S------------RDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAA- 66 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEE-E------------cCHHHHHHHHHHHHhhccccCCCceEEEeChHHHH-
Confidence 3799997 9999999999999999988753 2 233334333222100 0 01110 011122 222
Q ss_pred ccceEEeeccccccccc---cccccccceEEEecCCCC
Q psy1913 355 DKVDILVPAAIEKVIRK---SNADKVQAKIIVEAANGP 389 (535)
Q Consensus 355 ~~~DILiPaA~~~~It~---~na~~i~AkiIvEgAN~p 389 (535)
.++|++|-|.....+.. +-.+.+..++|+..+|+.
T Consensus 67 ~~aDvVilavp~~~~~~~l~~l~~~l~~~vvI~~~ngi 104 (219)
T TIGR01915 67 KRADVVILAVPWDHVLKTLESLRDELSGKLVISPVVPL 104 (219)
T ss_pred hcCCEEEEECCHHHHHHHHHHHHHhccCCEEEEeccCc
Confidence 47899998877554432 112234458999999985
No 181
>PRK14851 hypothetical protein; Provisional
Probab=91.76 E-value=0.11 Score=59.92 Aligned_cols=118 Identities=13% Similarity=0.111 Sum_probs=67.8
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH-HcCCcccCCCCcccCCCCcccc
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI-TKGTIKGYPGTKSAPTDIMFDK 356 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~-~~g~v~~~~~a~~i~~ell~~~ 356 (535)
|++++|+|.|.|-||..+|..|...|..=+.|.|.+ = +++..|-+..- ....+ +-++++.....+.+..
T Consensus 41 L~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D-------~--ve~sNLNRQ~~~~~~dv-G~~Kv~v~~~~l~~in 110 (679)
T PRK14851 41 LAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFD-------Q--FEPVNVNRQFGARVPSF-GRPKLAVMKEQALSIN 110 (679)
T ss_pred HhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCC-------E--ecccccccCcCcChhhC-CCHHHHHHHHHHHHhC
Confidence 467899999999999999999999998767766643 1 33333322110 00000 1111111111233333
Q ss_pred ceEEeeccccccccccccccc--cceEEEecCCCCCCH---HHHHHHHhCCceee
Q psy1913 357 VDILVPAAIEKVIRKSNADKV--QAKIIVEAANGPLTP---AAHAMLLKKNVLII 406 (535)
Q Consensus 357 ~DILiPaA~~~~It~~na~~i--~AkiIvEgAN~p~T~---eA~~iL~~rGI~vi 406 (535)
.++-|-+ ...-|+.+|+..+ .+-+|+++..++... ...+...++||.++
T Consensus 111 P~~~I~~-~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i 164 (679)
T PRK14851 111 PFLEITP-FPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVI 164 (679)
T ss_pred CCCeEEE-EecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEE
Confidence 3443333 2345677887765 578999999876322 23344567888775
No 182
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.75 E-value=0.74 Score=48.10 Aligned_cols=50 Identities=20% Similarity=0.176 Sum_probs=40.2
Q ss_pred CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHC----CCeEEE
Q psy1913 247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRG----RAKCLA 308 (535)
Q Consensus 247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~----GakVVa 308 (535)
-.+.|..||...++ ..++ +++|++|+|.|- ..||.-+|.+|.++ +|.|+.
T Consensus 136 ~~PcTp~av~~lL~----------~~~i--~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtv 190 (293)
T PRK14185 136 FVSATPNGILELLK----------RYHI--ETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTV 190 (293)
T ss_pred CCCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEE
Confidence 46899999887666 4565 489999999995 66899999999988 577654
No 183
>PLN02688 pyrroline-5-carboxylate reductase
Probab=91.74 E-value=0.43 Score=47.93 Aligned_cols=87 Identities=17% Similarity=0.229 Sum_probs=51.1
Q ss_pred cEEEEEccccHHHHHHHHHHHCCC----eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRA----KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF 354 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~Ga----kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~ 354 (535)
++|.|+|+|++|..+++.|.+.|. .|++..| .+.+.+....+ .| ....+. ++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~------------r~~~~~~~~~~-~g-------~~~~~~~~e~~- 59 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADD------------SNPARRDVFQS-LG-------VKTAASNTEVV- 59 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeC------------CCHHHHHHHHH-cC-------CEEeCChHHHH-
Confidence 479999999999999999999987 6665212 33444433332 22 222222 333
Q ss_pred ccceEEeeccccccccc---ccccccc-ceEEEecCCC
Q psy1913 355 DKVDILVPAAIEKVIRK---SNADKVQ-AKIIVEAANG 388 (535)
Q Consensus 355 ~~~DILiPaA~~~~It~---~na~~i~-AkiIvEgAN~ 388 (535)
.+|||+|.|.....+.+ +-.+.+. -++|+.-+++
T Consensus 60 ~~aDvVil~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g 97 (266)
T PLN02688 60 KSSDVIILAVKPQVVKDVLTELRPLLSKDKLLVSVAAG 97 (266)
T ss_pred hcCCEEEEEECcHHHHHHHHHHHhhcCCCCEEEEecCC
Confidence 48999999975333221 1112222 3677765554
No 184
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.67 E-value=0.78 Score=48.04 Aligned_cols=49 Identities=18% Similarity=0.140 Sum_probs=40.0
Q ss_pred CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEc-cccHHHHHHHHHHHC----CCeEEE
Q psy1913 248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQG-FGNVGFHAARYFRRG----RAKCLA 308 (535)
Q Consensus 248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQG-fGnVG~~~A~~L~e~----GakVVa 308 (535)
.+.|..||...++ ..|. +++|++|+|.| ...||.-+|.+|.++ +|.|..
T Consensus 141 ~PcTp~avi~lL~----------~~~i--~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv 194 (297)
T PRK14168 141 LPCTPAGIQEMLV----------RSGV--ETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTI 194 (297)
T ss_pred cCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEE
Confidence 5889999876666 4565 58999999999 567899999999988 677654
No 185
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.65 E-value=0.56 Score=49.01 Aligned_cols=82 Identities=21% Similarity=0.155 Sum_probs=58.7
Q ss_pred CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCH
Q psy1913 248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINY 326 (535)
Q Consensus 248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi 326 (535)
.+.|..||...++ ..|+ +++|++|+|.|= ..||.-++.+|.++||.|.. +.++ - -|
T Consensus 140 ~PcTp~avi~lL~----------~~~i--~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~-chs~-------T--~~- 196 (294)
T PRK14187 140 IPCTPKGCLYLIK----------TITR--NLSGSDAVVIGRSNIVGKPMACLLLGENCTVTT-VHSA-------T--RD- 196 (294)
T ss_pred cCcCHHHHHHHHH----------HhCC--CCCCCEEEEECCCccchHHHHHHHhhCCCEEEE-eCCC-------C--CC-
Confidence 5789999876555 4565 589999999995 66899999999999999875 3221 1 11
Q ss_pred HHHHHHHHHcCCcccCCCCcccCCCCccccceEEeeccc-cccccccccc
Q psy1913 327 KDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAI-EKVIRKSNAD 375 (535)
Q Consensus 327 ~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~-~~~It~~na~ 375 (535)
|. -+...+||+|-|+. .+.|+++...
T Consensus 197 --l~---------------------~~~~~ADIvVsAvGkp~~i~~~~ik 223 (294)
T PRK14187 197 --LA---------------------DYCSKADILVAAVGIPNFVKYSWIK 223 (294)
T ss_pred --HH---------------------HHHhhCCEEEEccCCcCccCHHHcC
Confidence 11 12357899998887 6667766554
No 186
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.61 E-value=0.42 Score=48.87 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=33.1
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHH
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK 333 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~ 333 (535)
++|+|.|.|.+|..+|..|++.|..|+. .|.|.+.+.+..
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~-------------~d~~~~~~~~~~ 41 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTL-------------VDIKQEQLESAQ 41 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEE-------------EeCCHHHHHHHH
Confidence 4799999999999999999999999987 446666665543
No 187
>PRK14982 acyl-ACP reductase; Provisional
Probab=91.51 E-value=1.2 Score=47.59 Aligned_cols=132 Identities=18% Similarity=0.281 Sum_probs=77.9
Q ss_pred chHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHC-CC-eEEEEecCCceEeCCCCCCCCH
Q psy1913 250 ATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRG-RA-KCLAIVEHDTAIVPDKGTEINY 326 (535)
Q Consensus 250 aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~-Ga-kVVaVsD~~G~iynp~G~dLDi 326 (535)
.|.+-...+++ ...+.+|. ++++++|+|.|. |.+|+.+|+.|.+. |. +|+.+ + -+.
T Consensus 133 ~T~~ll~~~V~------la~~~lg~--~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv-~------------R~~ 191 (340)
T PRK14982 133 HTAYVICRQVE------QNAPRLGI--DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLV-A------------RQQ 191 (340)
T ss_pred hHHHHHHHHHH------HhHHHhcc--CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEE-c------------CCH
Confidence 45544444444 33445664 589999999998 89999999999864 64 55542 2 223
Q ss_pred HHHHHHHHHcCCcccCCCCcccCC-CCccccceEEeeccc--cc-cccccccccccceEEEecCCCC-CCHHHHHHHHhC
Q psy1913 327 KDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAI--EK-VIRKSNADKVQAKIIVEAANGP-LTPAAHAMLLKK 401 (535)
Q Consensus 327 ~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~--~~-~It~~na~~i~AkiIvEgAN~p-~T~eA~~iL~~r 401 (535)
..+.+...+.+ .+...+- +.+ .++|+++=||- .. .|+.+... +-.+|+..|--. +.|+.. +
T Consensus 192 ~rl~~La~el~------~~~i~~l~~~l-~~aDiVv~~ts~~~~~~I~~~~l~--~~~~viDiAvPRDVd~~v~----~- 257 (340)
T PRK14982 192 ERLQELQAELG------GGKILSLEEAL-PEADIVVWVASMPKGVEIDPETLK--KPCLMIDGGYPKNLDTKVQ----G- 257 (340)
T ss_pred HHHHHHHHHhc------cccHHhHHHHH-ccCCEEEECCcCCcCCcCCHHHhC--CCeEEEEecCCCCCCcccC----C-
Confidence 44444443321 1111111 223 36899888775 33 26665442 468999999866 666441 1
Q ss_pred CceeeccccccccCcchhhH
Q psy1913 402 NVLIIPDIFANAGGVTVSYF 421 (535)
Q Consensus 402 GI~viPD~laNaGGVivSy~ 421 (535)
||+..--||++.-.+
T Consensus 258 -----~~V~v~~gG~V~~p~ 272 (340)
T PRK14982 258 -----PGIHVLKGGIVEHSL 272 (340)
T ss_pred -----CCEEEEeCCccccCC
Confidence 555555566654443
No 188
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.46 E-value=0.74 Score=47.90 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=40.4
Q ss_pred CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEc-cccHHHHHHHHHHH--CCCeEEE
Q psy1913 248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQG-FGNVGFHAARYFRR--GRAKCLA 308 (535)
Q Consensus 248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQG-fGnVG~~~A~~L~e--~GakVVa 308 (535)
.+.|..||...++ ..|+ +++|++|+|.| ...||.-+|.+|.+ +++.|..
T Consensus 138 ~PcTp~av~~ll~----------~~~i--~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtv 189 (284)
T PRK14193 138 LPCTPRGIVHLLR----------RYDV--ELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTL 189 (284)
T ss_pred CCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEE
Confidence 5899999886666 4566 48999999999 56789999999998 7888754
No 189
>KOG2380|consensus
Probab=91.41 E-value=0.33 Score=51.68 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=44.0
Q ss_pred CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccc
Q psy1913 280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKV 357 (535)
Q Consensus 280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~ 357 (535)
-.+|+|+||||.|+.+|+.|.+.|..|++-+ + ++-.+++++.| ...++. ++.+...
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hs-R--------------sdyssaa~~yg-------~~~ft~lhdlcerhp 109 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHS-R--------------SDYSSAAEKYG-------SAKFTLLHDLCERHP 109 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecC-c--------------chhHHHHHHhc-------ccccccHHHHHhcCC
Confidence 5799999999999999999999999998822 1 11122333332 222333 5667788
Q ss_pred eEEeecc
Q psy1913 358 DILVPAA 364 (535)
Q Consensus 358 DILiPaA 364 (535)
|+.+-|.
T Consensus 110 DvvLlct 116 (480)
T KOG2380|consen 110 DVVLLCT 116 (480)
T ss_pred CEEEEEe
Confidence 9988886
No 190
>PLN02858 fructose-bisphosphate aldolase
Probab=91.35 E-value=0.47 Score=59.00 Aligned_cols=106 Identities=15% Similarity=0.127 Sum_probs=70.6
Q ss_pred CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccce
Q psy1913 280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVD 358 (535)
Q Consensus 280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~D 358 (535)
..+|.++|+|++|..+|+.|.+.|+.|.+ .|.+.+...++.+. ++...+. .=+...||
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v-------------~dr~~~~~~~l~~~--------Ga~~~~s~~e~a~~ad 62 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQA-------------FEISTPLMEKFCEL--------GGHRCDSPAEAAKDAA 62 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEE-------------EcCCHHHHHHHHHc--------CCeecCCHHHHHhcCC
Confidence 56899999999999999999999999986 44666776666553 2333333 22335799
Q ss_pred EEeeccccccccccc-------ccccc-ceEEEe-cCCCC-CCHHHHHHHHhCC--ceee
Q psy1913 359 ILVPAAIEKVIRKSN-------ADKVQ-AKIIVE-AANGP-LTPAAHAMLLKKN--VLII 406 (535)
Q Consensus 359 ILiPaA~~~~It~~n-------a~~i~-AkiIvE-gAN~p-~T~eA~~iL~~rG--I~vi 406 (535)
++|-|........+- +..++ -++|++ +...| ++.+..+.|.++| +.|+
T Consensus 63 vVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~l 122 (1378)
T PLN02858 63 ALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLV 122 (1378)
T ss_pred EEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEE
Confidence 999886533222211 22232 245555 44555 5677788899999 8765
No 191
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=91.33 E-value=0.47 Score=52.98 Aligned_cols=75 Identities=17% Similarity=0.223 Sum_probs=49.6
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHH----------HHcCCcccC------CC
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK----------ITKGTIKGY------PG 344 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~----------~~~g~v~~~------~~ 344 (535)
++|+|.|.|..|..+|..|+..|..|+. .|.+.+.+.+.. .+.|.+..- ..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l-------------~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~ 74 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLL-------------YDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALAR 74 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEE-------------EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhC
Confidence 5899999999999999999999999987 557777665531 223322110 00
Q ss_pred CcccCC-CCccccceEEeeccccccc
Q psy1913 345 TKSAPT-DIMFDKVDILVPAAIEKVI 369 (535)
Q Consensus 345 a~~i~~-ell~~~~DILiPaA~~~~I 369 (535)
.+..+. +-+ .+||++|.|..++.-
T Consensus 75 i~~~~~~~~~-~~aDlViEav~E~~~ 99 (507)
T PRK08268 75 LRPVEALADL-ADCDLVVEAIVERLD 99 (507)
T ss_pred eEEeCCHHHh-CCCCEEEEcCcccHH
Confidence 111222 223 389999999776543
No 192
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.30 E-value=0.5 Score=41.05 Aligned_cols=103 Identities=14% Similarity=0.238 Sum_probs=62.5
Q ss_pred EEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCc----cccce
Q psy1913 283 YIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIM----FDKVD 358 (535)
Q Consensus 283 VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell----~~~~D 358 (535)
|+|.|+|.+|+.+++.|.+.+.+|+.|. .|.+...+..+.. +.-+. +...+.+.| -.++|
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid-------------~d~~~~~~~~~~~--~~~i~-gd~~~~~~l~~a~i~~a~ 64 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVID-------------RDPERVEELREEG--VEVIY-GDATDPEVLERAGIEKAD 64 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEE-------------SSHHHHHHHHHTT--SEEEE-S-TTSHHHHHHTTGGCES
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEE-------------CCcHHHHHHHhcc--ccccc-ccchhhhHHhhcCccccC
Confidence 6899999999999999999777888843 6777776666543 11110 111111222 25788
Q ss_pred EEeeccccccccc---cccccc--cceEEEecCCCCCCHHHHHHHHhCCcee
Q psy1913 359 ILVPAAIEKVIRK---SNADKV--QAKIIVEAANGPLTPAAHAMLLKKNVLI 405 (535)
Q Consensus 359 ILiPaA~~~~It~---~na~~i--~AkiIvEgAN~p~T~eA~~iL~~rGI~v 405 (535)
.++-++-....|- ..+.++ ..++|+..-| ++..+.|.+-|+-.
T Consensus 65 ~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~~----~~~~~~l~~~g~d~ 112 (116)
T PF02254_consen 65 AVVILTDDDEENLLIALLARELNPDIRIIARVND----PENAELLRQAGADH 112 (116)
T ss_dssp EEEEESSSHHHHHHHHHHHHHHTTTSEEEEEESS----HHHHHHHHHTT-SE
T ss_pred EEEEccCCHHHHHHHHHHHHHHCCCCeEEEEECC----HHHHHHHHHCCcCE
Confidence 8887776444333 333332 2577776654 56677888888743
No 193
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.29 E-value=0.5 Score=46.79 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=31.0
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD 313 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~ 313 (535)
|+..+|+|.|.|.+|..+|+.|...|..=+.+.|.+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 467899999999999999999999998766666653
No 194
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.27 E-value=0.44 Score=49.07 Aligned_cols=106 Identities=15% Similarity=0.197 Sum_probs=60.5
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH----cCCcccCC------C-CcccC
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT----KGTIKGYP------G-TKSAP 349 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~----~g~v~~~~------~-a~~i~ 349 (535)
++|+|.|.|++|..+|..|...|..|+. .|.+.+.+.+..+. .+.+..-. + .+..+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~-------------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 71 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVL-------------IDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEA 71 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEE-------------EECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeC
Confidence 5899999999999999999999999887 33555555444331 12111000 0 01111
Q ss_pred C-CCccccceEEeecccccc-cc----ccccccccce-EEEecCCCCCCHHHHHHHH
Q psy1913 350 T-DIMFDKVDILVPAAIEKV-IR----KSNADKVQAK-IIVEAANGPLTPAAHAMLL 399 (535)
Q Consensus 350 ~-ell~~~~DILiPaA~~~~-It----~~na~~i~Ak-iIvEgAN~p~T~eA~~iL~ 399 (535)
. +-.-.+||++|.|..+.. +. .+-...++.. +|+-..++....+..+.+.
T Consensus 72 ~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~ 128 (311)
T PRK06130 72 GLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVT 128 (311)
T ss_pred CHHHHhccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcC
Confidence 1 111248999999987653 11 2222223333 5666777765445445553
No 195
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=91.24 E-value=0.94 Score=49.44 Aligned_cols=101 Identities=13% Similarity=0.208 Sum_probs=66.4
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF 354 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~ 354 (535)
++.+++|.|.|.|..|+.+++.|.+.|+.-+.|+.++ .+....+.++.+.. ....++. +.+
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt------------~~ra~~La~~~~~~----~~~~~~~l~~~l- 240 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT------------IEKAQKITSAFRNA----SAHYLSELPQLI- 240 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC------------HHHHHHHHHHhcCC----eEecHHHHHHHh-
Confidence 4789999999999999999999999998777766553 23444444443210 0111121 222
Q ss_pred ccceEEeeccc--cccccccccccccceEEEecCCCC-CCHHHH
Q psy1913 355 DKVDILVPAAI--EKVIRKSNADKVQAKIIVEAANGP-LTPAAH 395 (535)
Q Consensus 355 ~~~DILiPaA~--~~~It~~na~~i~AkiIvEgAN~p-~T~eA~ 395 (535)
.++||+|-|+. .-+|+.+.... +-.+++.-|... +.|+..
T Consensus 241 ~~aDiVI~aT~a~~~vi~~~~~~~-~~~~~iDLavPRdidp~v~ 283 (414)
T PRK13940 241 KKADIIIAAVNVLEYIVTCKYVGD-KPRVFIDISIPQALDPKLG 283 (414)
T ss_pred ccCCEEEECcCCCCeeECHHHhCC-CCeEEEEeCCCCCCCcccc
Confidence 47999999976 56677655432 345888988865 666543
No 196
>PLN02858 fructose-bisphosphate aldolase
Probab=91.13 E-value=0.52 Score=58.63 Aligned_cols=115 Identities=17% Similarity=0.250 Sum_probs=71.4
Q ss_pred CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccce
Q psy1913 280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVD 358 (535)
Q Consensus 280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~D 358 (535)
.++|.+.|+|++|..+|+.|...|.+|++ .|.+.+.+.+.... ++...+. .-+..+||
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v-------------~dr~~~~~~~l~~~--------Ga~~~~s~~e~~~~aD 382 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCG-------------YDVYKPTLVRFENA--------GGLAGNSPAEVAKDVD 382 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEE-------------EeCCHHHHHHHHHc--------CCeecCCHHHHHhcCC
Confidence 37899999999999999999999999877 44555666555433 2222222 22335799
Q ss_pred EEeecccc-----cccccc--cccccc-ceEEEecC-CCC-CCHHHHHHHHh--CCceeeccccccccCcc
Q psy1913 359 ILVPAAIE-----KVIRKS--NADKVQ-AKIIVEAA-NGP-LTPAAHAMLLK--KNVLIIPDIFANAGGVT 417 (535)
Q Consensus 359 ILiPaA~~-----~~It~~--na~~i~-AkiIvEgA-N~p-~T~eA~~iL~~--rGI~viPD~laNaGGVi 417 (535)
|++-|-.. .++.++ -+..++ -++|++-. ..| ++.+..+.+.+ +|+.|+=--+ +||..
T Consensus 383 vVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPV--sGg~~ 451 (1378)
T PLN02858 383 VLVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPV--SGGVK 451 (1378)
T ss_pred EEEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccC--CCChh
Confidence 99987662 333221 122232 24555544 445 45667777888 9998763222 55543
No 197
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.07 E-value=0.46 Score=48.42 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=26.4
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVa 308 (535)
++|+|.|.|.+|..+|..|...|..|+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~ 31 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVM 31 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEE
Confidence 4799999999999999999999999887
No 198
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=91.03 E-value=0.38 Score=49.58 Aligned_cols=83 Identities=12% Similarity=0.083 Sum_probs=54.0
Q ss_pred cEEEEEccccHHHHHHHHHHHC---CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRG---RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD 355 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~---GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~ 355 (535)
.||.|.|||+.|+.+++.|... ++.+++|.|+. .+...+.... ...++. +++..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~------------~~~~~~~~~~---------~~~~~~l~~ll~~ 61 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNA------------ADLPPALAGR---------VALLDGLPGLLAW 61 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCC------------HHHHHHhhcc---------CcccCCHHHHhhc
Confidence 6899999999999999998753 47888876643 1222221111 223444 56788
Q ss_pred cceEEeecccccccccccccccc--ceEEEe
Q psy1913 356 KVDILVPAAIEKVIRKSNADKVQ--AKIIVE 384 (535)
Q Consensus 356 ~~DILiPaA~~~~It~~na~~i~--AkiIvE 384 (535)
++|++|.||....+.+--..-++ +.+|+-
T Consensus 62 ~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~ 92 (267)
T PRK13301 62 RPDLVVEAAGQQAIAEHAEGCLTAGLDMIIC 92 (267)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999987777654333333 344443
No 199
>PRK06153 hypothetical protein; Provisional
Probab=91.02 E-value=0.44 Score=51.57 Aligned_cols=117 Identities=9% Similarity=0.097 Sum_probs=65.9
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH--cCCcc-cCCCCcccCCCCcc
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT--KGTIK-GYPGTKSAPTDIMF 354 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~--~g~v~-~~~~a~~i~~ell~ 354 (535)
|++++|+|.|+|-+|++++..|++.|..=+.+.|.+ = ++..-|-+..-. ...+. ..++++.....+..
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D-------~--Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~ 244 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD-------D--FLQHNAFRSPGAASIEELREAPKKVDYFKSRYSN 244 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC-------E--ecccccccccccCCHhHcCCcchHHHHHHHHHHH
Confidence 467899999999999999999999998666655543 2 333333221100 00000 00111111111112
Q ss_pred ccceEEeecccccccccccccccc-ceEEEecCCCCCC-HHHHHHHHhCCceee
Q psy1913 355 DKVDILVPAAIEKVIRKSNADKVQ-AKIIVEAANGPLT-PAAHAMLLKKNVLII 406 (535)
Q Consensus 355 ~~~DILiPaA~~~~It~~na~~i~-AkiIvEgAN~p~T-~eA~~iL~~rGI~vi 406 (535)
...+|. +....|+++|++.+. |-+|+.+.-+..+ ....+.+.+.||.+|
T Consensus 245 in~~I~---~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~I 295 (393)
T PRK06153 245 MRRGIV---PHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFI 295 (393)
T ss_pred hCCeEE---EEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEE
Confidence 333442 122345777877664 7888888876643 345566788888654
No 200
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=90.97 E-value=0.57 Score=48.03 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=26.4
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVa 308 (535)
++|+|.|.|++|..+|..|+..|..|+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~ 32 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWL 32 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence 5899999999999999999999999887
No 201
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=90.96 E-value=0.9 Score=42.96 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=28.5
Q ss_pred EEEEEccccHHHHHHHHHHH-CCCeEEEEecCC
Q psy1913 282 TYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHD 313 (535)
Q Consensus 282 ~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~ 313 (535)
+|+|-|||-.|+.+++.+.. ....||+|.|..
T Consensus 2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~ 34 (151)
T PF00044_consen 2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPA 34 (151)
T ss_dssp EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred EEEEECCCcccHHHHHhhcccceEEEEEEeccc
Confidence 79999999999999999984 578999998863
No 202
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=90.91 E-value=1.1 Score=44.42 Aligned_cols=140 Identities=15% Similarity=0.140 Sum_probs=81.4
Q ss_pred CCchHHHHHHHHHHHHhcHHHHHHhCCC-------CCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCC
Q psy1913 248 ESATGRGVFTAAEILVNNEEYMCEIGLE-------PCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPD 319 (535)
Q Consensus 248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~-------~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp 319 (535)
.+.|.+||..-++ ..+.. -+++|++|+|.|= ..||.-+|.+|.++||.|. ++|++|..+-.
T Consensus 33 ~PCTp~avi~lL~----------~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVt-i~~~~~~~~~~ 101 (197)
T cd01079 33 LPCTPLAIVKILE----------FLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVY-SVDINGIQVFT 101 (197)
T ss_pred cCCCHHHHHHHHH----------HhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EEecCcccccc
Confidence 5899999987766 23331 1589999999995 5689999999999999988 67777766654
Q ss_pred CCCCCCHHHHHHHHHHcCCcccCCCCcccCCCC--ccccceEEeeccc-ccc-ccccccccccceEEEecCCCCCCHHHH
Q psy1913 320 KGTEINYKDLHTYKITKGTIKGYPGTKSAPTDI--MFDKVDILVPAAI-EKV-IRKSNADKVQAKIIVEAANGPLTPAAH 395 (535)
Q Consensus 320 ~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~el--l~~~~DILiPaA~-~~~-It~~na~~i~AkiIvEgAN~p~T~eA~ 395 (535)
.+ -. + ++... .....++.+ +...+||+|-|.. .+. |+.+....= |-+|==|-|.-.. +
T Consensus 102 ~~--~~---~-~hs~t--------~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~~d~ik~G-avVIDVGi~~dvd---~ 163 (197)
T cd01079 102 RG--ES---I-RHEKH--------HVTDEEAMTLDCLSQSDVVITGVPSPNYKVPTELLKDG-AICINFASIKNFE---P 163 (197)
T ss_pred cc--cc---c-ccccc--------cccchhhHHHHHhhhCCEEEEccCCCCCccCHHHcCCC-cEEEEcCCCcCcc---H
Confidence 44 11 0 11000 000000012 2358899999987 555 676554421 2233233332111 2
Q ss_pred HHHHhCCceeeccccccccCcchhhH
Q psy1913 396 AMLLKKNVLIIPDIFANAGGVTVSYF 421 (535)
Q Consensus 396 ~iL~~rGI~viPD~laNaGGVivSy~ 421 (535)
.+ .++-=.+.|= -|-+|++.+
T Consensus 164 ~v-~~~as~iTPv----VGpvTva~L 184 (197)
T cd01079 164 SV-KEKASIYVPS----IGKVTIAML 184 (197)
T ss_pred hH-HhhcCEeCCC----cCHHHHHHH
Confidence 22 2332246662 677776654
No 203
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.90 E-value=0.86 Score=49.08 Aligned_cols=110 Identities=14% Similarity=0.164 Sum_probs=66.0
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCC----
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDI---- 352 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~el---- 352 (535)
.+..++++|.|+|.+|+.+++.|.+.|..|+.|. -|.+.+.++.++...+.-+.+ ...+.+.
T Consensus 228 ~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid-------------~~~~~~~~~~~~~~~~~~i~g-d~~~~~~L~~~ 293 (453)
T PRK09496 228 EKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIE-------------RDPERAEELAEELPNTLVLHG-DGTDQELLEEE 293 (453)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEE-------------CCHHHHHHHHHHCCCCeEEEC-CCCCHHHHHhc
Confidence 4567899999999999999999999999998843 566766666654311111101 1111111
Q ss_pred ccccceEEeeccccc---ccccccccccc-ceEEEecCCCCCCHHHHHHHHhCCce
Q psy1913 353 MFDKVDILVPAAIEK---VIRKSNADKVQ-AKIIVEAANGPLTPAAHAMLLKKNVL 404 (535)
Q Consensus 353 l~~~~DILiPaA~~~---~It~~na~~i~-AkiIvEgAN~p~T~eA~~iL~~rGI~ 404 (535)
--.++|.+|-+.-.. .+....+..+. .++|+... +++..++|+..|+-
T Consensus 294 ~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~~~~----~~~~~~~~~~~g~~ 345 (453)
T PRK09496 294 GIDEADAFIALTNDDEANILSSLLAKRLGAKKVIALVN----RPAYVDLVEGLGID 345 (453)
T ss_pred CCccCCEEEECCCCcHHHHHHHHHHHHhCCCeEEEEEC----CcchHHHHHhcCCC
Confidence 224788888665432 22222233332 36676653 34556778888874
No 204
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=90.84 E-value=1.2 Score=46.40 Aligned_cols=50 Identities=28% Similarity=0.301 Sum_probs=41.9
Q ss_pred CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEE
Q psy1913 247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVa 308 (535)
-.+.|-+|+...++ ..+. ++.|++++|+|-+| ||+-++.+|...++.|..
T Consensus 135 ~~PCTp~gi~~ll~----------~~~i--~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtv 185 (283)
T COG0190 135 FLPCTPAGIMTLLE----------EYGI--DLRGKNVVVVGRSNIVGKPLALLLLNANATVTV 185 (283)
T ss_pred CCCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEE
Confidence 35899999887666 4565 58999999999776 899999999999998875
No 205
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=90.81 E-value=0.92 Score=49.26 Aligned_cols=110 Identities=20% Similarity=0.342 Sum_probs=69.6
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHH------------------HHcCCcccC
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK------------------ITKGTIKGY 342 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~------------------~~~g~v~~~ 342 (535)
.+|+|.|+|-||.-+|-.++..|++|++ -|||...+.... .+.|.+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG-------------~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~l--- 73 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIG-------------VDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKL--- 73 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEe-------------EeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCc---
Confidence 8999999999999999999999999999 445544444332 222211
Q ss_pred CCCcccCC-CCccccceEEeeccccccccc--------cc-cccc------cceEEEecCCCC-CCHHHHH-HHHhCCce
Q psy1913 343 PGTKSAPT-DIMFDKVDILVPAAIEKVIRK--------SN-ADKV------QAKIIVEAANGP-LTPAAHA-MLLKKNVL 404 (535)
Q Consensus 343 ~~a~~i~~-ell~~~~DILiPaA~~~~It~--------~n-a~~i------~AkiIvEgAN~p-~T~eA~~-iL~~rGI~ 404 (535)
+..+. +-+. +||++|-|-..-.-.. +| +..| ..-+|.|..=-| +|.+.-. +|++++=+
T Consensus 74 ---raTtd~~~l~-~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL 149 (436)
T COG0677 74 ---RATTDPEELK-ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGL 149 (436)
T ss_pred ---eEecChhhcc-cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCC
Confidence 11122 3444 9999998865332221 11 1112 147899999999 7877665 55554544
Q ss_pred eec-ccc
Q psy1913 405 IIP-DIF 410 (535)
Q Consensus 405 viP-D~l 410 (535)
.+| ||.
T Consensus 150 ~~~~Df~ 156 (436)
T COG0677 150 KFGEDFY 156 (436)
T ss_pred cccceee
Confidence 444 553
No 206
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=90.76 E-value=0.33 Score=51.52 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=31.7
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEec
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE 311 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD 311 (535)
.|+|+||+|+|+|+.|+..|+.|...|.+|++..+
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r 47 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVR 47 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEEC
Confidence 48999999999999999999999999999987543
No 207
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.74 E-value=0.67 Score=49.91 Aligned_cols=93 Identities=15% Similarity=0.185 Sum_probs=54.0
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCC-CCcccCC--CCccccc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYP-GTKSAPT--DIMFDKV 357 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~-~a~~i~~--ell~~~~ 357 (535)
++|+|.|+|++|+.+++.|.+.|..|+.|. -|.+.+....+..+ +.-+. .+..... +.--.++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid-------------~~~~~~~~~~~~~~-~~~~~gd~~~~~~l~~~~~~~a 66 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVID-------------TDEERLRRLQDRLD-VRTVVGNGSSPDVLREAGAEDA 66 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEE-------------CCHHHHHHHHhhcC-EEEEEeCCCCHHHHHHcCCCcC
Confidence 479999999999999999999999998743 45565555544222 11110 1110000 1112478
Q ss_pred eEEeeccccccccc---cccccc--cceEEEecCC
Q psy1913 358 DILVPAAIEKVIRK---SNADKV--QAKIIVEAAN 387 (535)
Q Consensus 358 DILiPaA~~~~It~---~na~~i--~AkiIvEgAN 387 (535)
|++|-|.....++. ..+..+ ..++|+...+
T Consensus 67 ~~vi~~~~~~~~n~~~~~~~r~~~~~~~ii~~~~~ 101 (453)
T PRK09496 67 DLLIAVTDSDETNMVACQIAKSLFGAPTTIARVRN 101 (453)
T ss_pred CEEEEecCChHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 88888876544443 233333 2356665543
No 208
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=90.73 E-value=0.87 Score=39.65 Aligned_cols=84 Identities=17% Similarity=0.237 Sum_probs=55.3
Q ss_pred cEEEEEccccHHHHHHHHHHHC--CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-c
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRG--RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-D 355 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~--GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-~ 355 (535)
.+|+|.|+|+.|+.....+.+. +.+|++|+| .+.+...+..++.+ ...+++ ++++ .
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d------------~~~~~~~~~~~~~~-------~~~~~~~~~ll~~~ 61 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCD------------PDPERAEAFAEKYG-------IPVYTDLEELLADE 61 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEEC------------SSHHHHHHHHHHTT-------SEEESSHHHHHHHT
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEe------------CCHHHHHHHHHHhc-------ccchhHHHHHHHhh
Confidence 3799999999999888777665 679999875 45666666665553 223444 5665 5
Q ss_pred cceEEeeccccccccccccccc---cceEEEe
Q psy1913 356 KVDILVPAAIEKVIRKSNADKV---QAKIIVE 384 (535)
Q Consensus 356 ~~DILiPaA~~~~It~~na~~i---~AkiIvE 384 (535)
++|+++-|+.... +.+-+... ...+++|
T Consensus 62 ~~D~V~I~tp~~~-h~~~~~~~l~~g~~v~~E 92 (120)
T PF01408_consen 62 DVDAVIIATPPSS-HAEIAKKALEAGKHVLVE 92 (120)
T ss_dssp TESEEEEESSGGG-HHHHHHHHHHTTSEEEEE
T ss_pred cCCEEEEecCCcc-hHHHHHHHHHcCCEEEEE
Confidence 7999998886532 33332222 2366666
No 209
>KOG2018|consensus
Probab=90.72 E-value=0.66 Score=48.97 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=29.8
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEec
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE 311 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD 311 (535)
+++.-|+|+|.|.||+|++..|.+.|++=+-|.|
T Consensus 72 l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVD 105 (430)
T KOG2018|consen 72 LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVD 105 (430)
T ss_pred hcCcEEEEEecCchhHHHHHHHHHhcCceEEEec
Confidence 5688999999999999999999999986666555
No 210
>PRK04148 hypothetical protein; Provisional
Probab=90.69 E-value=0.44 Score=44.34 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=37.9
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT 335 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~ 335 (535)
++++|+++|.| -|..+|..|.+.|..|+| .|++..++...++.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~Via-------------IDi~~~aV~~a~~~ 58 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIV-------------IDINEKAVEKAKKL 58 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHh
Confidence 67899999999 898999999999999999 88999987766554
No 211
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=90.64 E-value=0.64 Score=47.46 Aligned_cols=106 Identities=10% Similarity=0.149 Sum_probs=61.4
Q ss_pred cEEEEEccccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKV 357 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~ 357 (535)
.||+|.|+|++|+..++.|.+. +..+++|++.. .. .....+. .+. +...++. ++ ..++
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~-----~~-----~~~~~~~---~~~-----~~~~~~d~~~l-~~~~ 62 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPE-----HS-----IDAVRRA---LGE-----AVRVVSSVDAL-PQRP 62 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcC-----CC-----HHHHhhh---hcc-----CCeeeCCHHHh-ccCC
Confidence 4899999999999999999875 78888887432 11 1111111 110 1222333 45 6779
Q ss_pred eEEeeccccccccccccccc-c--ceEEEecC---CCC-CCHHHHHHHHhCCceee
Q psy1913 358 DILVPAAIEKVIRKSNADKV-Q--AKIIVEAA---NGP-LTPAAHAMLLKKNVLII 406 (535)
Q Consensus 358 DILiPaA~~~~It~~na~~i-~--AkiIvEgA---N~p-~T~eA~~iL~~rGI~vi 406 (535)
|+++.|+..... .+.+... + ..+|++.. .-+ ..++..+..+++|+.+.
T Consensus 63 DvVve~t~~~~~-~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~ 117 (265)
T PRK13303 63 DLVVECAGHAAL-KEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLH 117 (265)
T ss_pred CEEEECCCHHHH-HHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEE
Confidence 999999986644 4444433 2 46666521 111 12233445667786543
No 212
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.42 E-value=0.54 Score=49.64 Aligned_cols=48 Identities=23% Similarity=0.151 Sum_probs=41.0
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcC
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKG 337 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g 337 (535)
+....+|+|.|.|-||..+|+...-.|++|.- -|+++++|..+...++
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vti-------------ld~n~~rl~~ldd~f~ 212 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTI-------------LDLNIDRLRQLDDLFG 212 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEE-------------EecCHHHHhhhhHhhC
Confidence 34557899999999999999999999999987 5699999988877654
No 213
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.37 E-value=0.59 Score=52.47 Aligned_cols=105 Identities=15% Similarity=0.153 Sum_probs=62.9
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCc----ccc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIM----FDK 356 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell----~~~ 356 (535)
-+++|.|+|++|+.+|+.|.+.|..++.| |-|.+.+.+.++. |.-.-+-++. +++.| -.+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvI-------------d~d~~~~~~~~~~-g~~~i~GD~~--~~~~L~~a~i~~ 481 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVI-------------ETSRTRVDELRER-GIRAVLGNAA--NEEIMQLAHLDC 481 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEE-------------ECCHHHHHHHHHC-CCeEEEcCCC--CHHHHHhcCccc
Confidence 37899999999999999999999999883 3667777666543 2100010111 11222 247
Q ss_pred ceEEeeccccccccc---cccccc--cceEEEecCCCCCCHHHHHHHHhCCcee
Q psy1913 357 VDILVPAAIEKVIRK---SNADKV--QAKIIVEAANGPLTPAAHAMLLKKNVLI 405 (535)
Q Consensus 357 ~DILiPaA~~~~It~---~na~~i--~AkiIvEgAN~p~T~eA~~iL~~rGI~v 405 (535)
||.++-+...+.-+. ..+.+. .+++|+=.. +++..+.|++-|+.+
T Consensus 482 a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~----~~~~~~~l~~~Gad~ 531 (558)
T PRK10669 482 ARWLLLTIPNGYEAGEIVASAREKRPDIEIIARAH----YDDEVAYITERGANQ 531 (558)
T ss_pred cCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHcCCCE
Confidence 887766654332111 111111 346776543 467778888888654
No 214
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.33 E-value=0.91 Score=49.03 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=30.3
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH 312 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~ 312 (535)
++|++|.|.|.|..|..+|++|++.|++|++ +|.
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~-~d~ 36 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTV-NDG 36 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEE-EcC
Confidence 5789999999999999999999999999876 453
No 215
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=90.21 E-value=0.92 Score=48.41 Aligned_cols=83 Identities=24% Similarity=0.222 Sum_probs=59.1
Q ss_pred CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCC
Q psy1913 247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEIN 325 (535)
Q Consensus 247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLD 325 (535)
-.+.|..||..-++ ..|. +++|++|+|.|= ..||.-+|.+|.++||.|.. +.+. + -|
T Consensus 193 ~~PCTp~avi~LL~----------~~~i--~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTi-cHs~--------T-~n 250 (345)
T PLN02897 193 FVSCTPKGCVELLI----------RSGV--EIAGKNAVVIGRSNIVGLPMSLLLQRHDATVST-VHAF--------T-KD 250 (345)
T ss_pred CcCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCccccHHHHHHHHHCCCEEEE-EcCC--------C-CC
Confidence 46899999876665 4565 489999999995 56899999999999998865 3221 0 11
Q ss_pred HHHHHHHHHHcCCcccCCCCcccCCCCccccceEEeeccc-cccccccccc
Q psy1913 326 YKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAI-EKVIRKSNAD 375 (535)
Q Consensus 326 i~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~-~~~It~~na~ 375 (535)
+. -+...+||+|-|+. .+.|+.+...
T Consensus 251 l~------------------------~~~~~ADIvIsAvGkp~~v~~d~vk 277 (345)
T PLN02897 251 PE------------------------QITRKADIVIAAAGIPNLVRGSWLK 277 (345)
T ss_pred HH------------------------HHHhhCCEEEEccCCcCccCHHHcC
Confidence 11 12357899999887 6767765544
No 216
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.18 E-value=1.3 Score=48.98 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=29.0
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa 308 (535)
+.|++|+|.|+|..|..++++|+..|++|++
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~ 40 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTV 40 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEE
Confidence 4689999999999999999999999999887
No 217
>PLN02306 hydroxypyruvate reductase
Probab=90.15 E-value=0.38 Score=52.02 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=67.1
Q ss_pred CCCCcEEEEEccccHHHHHHHHHH-HCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcC-Cc---ccCC-CCcccCC
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFR-RGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKG-TI---KGYP-GTKSAPT 350 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~-e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g-~v---~~~~-~a~~i~~ 350 (535)
+|.|+||.|.|||++|+.+|+.|. -.|++|++ ||+.. - ..+.......+ .+ ..++ +.+....
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~--------~d~~~--~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 229 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY--------YDLYQ--S--TRLEKFVTAYGQFLKANGEQPVTWKRASS 229 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEE--------ECCCC--c--hhhhhhhhhhcccccccccccccccccCC
Confidence 589999999999999999999985 78999988 33332 0 11111000111 00 0000 0111222
Q ss_pred --CCccccceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHH-HHHHHHhCCc
Q psy1913 351 --DIMFDKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPA-AHAMLLKKNV 403 (535)
Q Consensus 351 --ell~~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~e-A~~iL~~rGI 403 (535)
+++ ..|||++-++. .+.|+.+....++ -.+++--|=|++ ..+ ..+.|++.-|
T Consensus 230 L~ell-~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i 291 (386)
T PLN02306 230 MEEVL-READVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPM 291 (386)
T ss_pred HHHHH-hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCe
Confidence 344 46899988755 3345555555554 468888899985 333 3356766545
No 218
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=90.13 E-value=3.1 Score=38.80 Aligned_cols=49 Identities=22% Similarity=0.286 Sum_probs=39.8
Q ss_pred CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEE
Q psy1913 248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQG-FGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVa 308 (535)
.+.|..|+...++ +.|+ +++|++|.|.| -..||.-+|.+|.++|+.|..
T Consensus 8 ~p~t~~a~~~ll~----------~~~~--~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~ 57 (140)
T cd05212 8 VSPVAKAVKELLN----------KEGV--RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYS 57 (140)
T ss_pred cccHHHHHHHHHH----------HcCC--CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 4677777665554 4676 58999999999 567899999999999999887
No 219
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=90.07 E-value=0.24 Score=45.18 Aligned_cols=31 Identities=16% Similarity=0.378 Sum_probs=26.1
Q ss_pred EEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913 282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEH 312 (535)
Q Consensus 282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~ 312 (535)
+|.|.|.|.+|..+|+.|...|..=+.+.|.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~ 31 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDF 31 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcC
Confidence 5899999999999999999999865555543
No 220
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=90.06 E-value=0.58 Score=53.50 Aligned_cols=111 Identities=18% Similarity=0.204 Sum_probs=70.6
Q ss_pred CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCc----cc
Q psy1913 280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIM----FD 355 (535)
Q Consensus 280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell----~~ 355 (535)
..+|+|.|||.+|+.+++.|.+.|.++++ -|.|.+.+.+.++. |.-.-|-+++. .++| -.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvv-------------ID~d~~~v~~~~~~-g~~v~~GDat~--~~~L~~agi~ 463 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTV-------------LDHDPDHIETLRKF-GMKVFYGDATR--MDLLESAGAA 463 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEE-------------EECCHHHHHHHHhc-CCeEEEEeCCC--HHHHHhcCCC
Confidence 36899999999999999999999999988 44777777766543 32111111111 1333 24
Q ss_pred cceEEeeccccccccc---cccccc--cceEEEecCCCCCCHHHHHHHHhCCceee-cccc
Q psy1913 356 KVDILVPAAIEKVIRK---SNADKV--QAKIIVEAANGPLTPAAHAMLLKKNVLII-PDIF 410 (535)
Q Consensus 356 ~~DILiPaA~~~~It~---~na~~i--~AkiIvEgAN~p~T~eA~~iL~~rGI~vi-PD~l 410 (535)
++|.+|-|.-....|. ..+.+. ..++|+=+. +++....|++.|+..+ |...
T Consensus 464 ~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~----d~~~~~~L~~~Gad~v~~e~~ 520 (621)
T PRK03562 464 KAEVLINAIDDPQTSLQLVELVKEHFPHLQIIARAR----DVDHYIRLRQAGVEKPERETF 520 (621)
T ss_pred cCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEEC----CHHHHHHHHHCCCCEEehhhH
Confidence 7898888875533333 233333 346776443 3566778999998754 4433
No 221
>PRK06141 ornithine cyclodeaminase; Validated
Probab=89.96 E-value=2.5 Score=44.23 Aligned_cols=113 Identities=9% Similarity=0.099 Sum_probs=69.7
Q ss_pred CCcEEEEEccccHHHHHHHHHHH-CCC-eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRR-GRA-KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF 354 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e-~Ga-kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~ 354 (535)
..++|.|.|.|..|+..++.+.. .+. +|.. .+ -+.+...++.++.... ++ .....+. +.+
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V-~~------------Rs~~~a~~~a~~~~~~-g~-~~~~~~~~~~av- 187 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRV-WG------------RDPAKAEALAAELRAQ-GF-DAEVVTDLEAAV- 187 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEE-Ec------------CCHHHHHHHHHHHHhc-CC-ceEEeCCHHHHH-
Confidence 57899999999999999987665 554 4443 22 4455655555542210 11 1222222 233
Q ss_pred ccceEEeeccccc--cccccccccccceEEEecCCCCCCHHHHHHHHhCCceeecc
Q psy1913 355 DKVDILVPAAIEK--VIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPD 408 (535)
Q Consensus 355 ~~~DILiPaA~~~--~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD 408 (535)
.+|||++-|+... +++.+.... .+-|.+-|++.|...|.+.-+.+++..|+=|
T Consensus 188 ~~aDIVi~aT~s~~pvl~~~~l~~-g~~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 188 RQADIISCATLSTEPLVRGEWLKP-GTHLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred hcCCEEEEeeCCCCCEecHHHcCC-CCEEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 4899998776532 333333221 3467788899998888887777888766643
No 222
>PRK07877 hypothetical protein; Provisional
Probab=89.92 E-value=0.17 Score=58.70 Aligned_cols=129 Identities=13% Similarity=0.141 Sum_probs=75.0
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCC-eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCccc--CCCCcccCCCCcc
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRA-KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKG--YPGTKSAPTDIMF 354 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~--~~~a~~i~~ell~ 354 (535)
|+.++|+|.|.| ||+++|.+|...|. -=+.+.|. |= +++..|-+.. -+..+ -++++.....+..
T Consensus 105 L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~-------D~--ve~sNLnRq~---~~~~diG~~Kv~~a~~~l~~ 171 (722)
T PRK07877 105 LGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADF-------DT--LELSNLNRVP---AGVFDLGVNKAVVAARRIAE 171 (722)
T ss_pred HhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcC-------CE--Eccccccccc---CChhhcccHHHHHHHHHHHH
Confidence 467899999999 99999999999994 33444443 22 4444443311 01111 1111111112333
Q ss_pred ccceEEeeccccccccccccccc--cceEEEecCCCCCC-HHHHHHHHhCCceeeccccccccCcc-hhhHh
Q psy1913 355 DKVDILVPAAIEKVIRKSNADKV--QAKIIVEAANGPLT-PAAHAMLLKKNVLIIPDIFANAGGVT-VSYFE 422 (535)
Q Consensus 355 ~~~DILiPaA~~~~It~~na~~i--~AkiIvEgAN~p~T-~eA~~iL~~rGI~viPD~laNaGGVi-vSy~E 422 (535)
.+.+|=|-+- ..-|+++|++.+ .+-+|+++.-+.-+ -...+.-.++||.+| +-+.++|.+ +..|.
T Consensus 172 inp~i~v~~~-~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i--~~~~~~g~~~~e~~~ 240 (722)
T PRK07877 172 LDPYLPVEVF-TDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVL--MATSDRGLLDVERFD 240 (722)
T ss_pred HCCCCEEEEE-eccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEE--EEcCCCCCcCcceee
Confidence 4444444333 344677888876 57899999887633 234455678899887 445556665 34444
No 223
>PRK14852 hypothetical protein; Provisional
Probab=89.92 E-value=0.21 Score=59.57 Aligned_cols=118 Identities=11% Similarity=0.076 Sum_probs=69.5
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH-HcCCcccCCCCcccCCCCcccc
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI-TKGTIKGYPGTKSAPTDIMFDK 356 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~-~~g~v~~~~~a~~i~~ell~~~ 356 (535)
|+..+|+|.|.|-||..+|+.|...|..=+.|.|-+ = ++...|-+-.- ....+ +-++++.....+...+
T Consensus 330 L~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D-------~--Ve~SNLNRQ~l~~~~dI-G~~Kaevaa~~l~~IN 399 (989)
T PRK14852 330 LLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFD-------A--YSPVNLNRQYGASIASF-GRGKLDVMTERALSVN 399 (989)
T ss_pred HhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC-------E--ecccccccccCCChhhC-CChHHHHHHHHHHHHC
Confidence 678999999999999999999999998777777643 1 33333222100 00000 1111111111233344
Q ss_pred ceEEeeccccccccccccccc--cceEEEecCCCCCCHH---HHHHHHhCCceee
Q psy1913 357 VDILVPAAIEKVIRKSNADKV--QAKIIVEAANGPLTPA---AHAMLLKKNVLII 406 (535)
Q Consensus 357 ~DILiPaA~~~~It~~na~~i--~AkiIvEgAN~p~T~e---A~~iL~~rGI~vi 406 (535)
.+|=|-+--+ -|+.+|++.+ .+-+|+++..++.+.. ......++||.++
T Consensus 400 P~v~I~~~~~-~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I 453 (989)
T PRK14852 400 PFLDIRSFPE-GVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVI 453 (989)
T ss_pred CCCeEEEEec-CCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEE
Confidence 4444444333 3577888876 5789999998875532 2233478888775
No 224
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.91 E-value=0.58 Score=50.06 Aligned_cols=36 Identities=31% Similarity=0.484 Sum_probs=31.6
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD 313 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~ 313 (535)
|++++|+|.|.|-+|..+++.|...|..=+.+.|.+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 568899999999999999999999998777777654
No 225
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=89.81 E-value=0.79 Score=50.70 Aligned_cols=55 Identities=25% Similarity=0.332 Sum_probs=38.8
Q ss_pred HHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHC-----CCeEEEEecCCc
Q psy1913 259 AEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRG-----RAKCLAIVEHDT 314 (535)
Q Consensus 259 i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~-----GakVVaVsD~~G 314 (535)
++.+++. ++....+-....+.++|+|=|||-+|+.++|.+.+. +.+||||-+..+
T Consensus 107 ~~~~~~~-~l~~~~~~~~~~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~n 166 (477)
T PRK08289 107 VEAFVAE-ELADAVGGADDIEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKG 166 (477)
T ss_pred HHHHHHH-HHhhhhcCCCCCCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCC
Confidence 3444432 333344433345678999999999999999998864 579999976544
No 226
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=89.62 E-value=3.3 Score=46.01 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=27.5
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEE
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCL 307 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVV 307 (535)
.|+|++|+|.|+|..|..-|.-|...|..|+
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 3789999999999999988888888898777
No 227
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=89.62 E-value=3.2 Score=45.58 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=28.1
Q ss_pred cEEEEEccccHHHHHHHHHHH-CCCeEEEEecC
Q psy1913 281 KTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEH 312 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~ 312 (535)
.+|+|-|||..|+.++|.+.+ .+.+||+|-|.
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp 118 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDP 118 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCC
Confidence 499999999999999999875 68999997653
No 228
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.60 E-value=0.77 Score=46.98 Aligned_cols=28 Identities=21% Similarity=0.063 Sum_probs=26.3
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVa 308 (535)
++|+|.|.|.+|..+|..|++.|..|+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l 31 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTI 31 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence 4899999999999999999999999887
No 229
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=89.59 E-value=8.1 Score=40.11 Aligned_cols=133 Identities=14% Similarity=0.162 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHH
Q psy1913 251 TGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH 330 (535)
Q Consensus 251 Tg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~ 330 (535)
-+.|...+++ ..+. +++++++.|.|.|..++.++-.|...|++-|.|.+++ ++ ..++..
T Consensus 107 D~~Gf~~~l~----------~~~~--~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt-----~~----~~~ka~ 165 (288)
T PRK12749 107 DGTGHIRAIK----------ESGF--DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR-----DE----FFDKAL 165 (288)
T ss_pred CHHHHHHHHH----------hcCC--CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC-----cc----HHHHHH
Confidence 4677777776 2343 4689999999999999999999999998777766653 10 123333
Q ss_pred HHHHHcCCcccCCC-CcccCC---C-Cc--cccceEEeeccccccccccc------ccccc-ceEEEecCCCC-CCHHHH
Q psy1913 331 TYKITKGTIKGYPG-TKSAPT---D-IM--FDKVDILVPAAIEKVIRKSN------ADKVQ-AKIIVEAANGP-LTPAAH 395 (535)
Q Consensus 331 ~~~~~~g~v~~~~~-a~~i~~---e-ll--~~~~DILiPaA~~~~It~~n------a~~i~-AkiIvEgAN~p-~T~eA~ 395 (535)
+..++.+.. +.. ....+. + +. ..++||+|-|+.-+.-...+ ...++ ..+|.+..-+| -|+=..
T Consensus 166 ~la~~~~~~--~~~~~~~~~~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~ 243 (288)
T PRK12749 166 AFAQRVNEN--TDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQ 243 (288)
T ss_pred HHHHHhhhc--cCceEEEechhhhhhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCCCEEEEecCCCccCHHHH
Confidence 433332110 000 011111 1 11 13689999998754432111 11222 35777888777 465443
Q ss_pred HHHHhCCceeec
Q psy1913 396 AMLLKKNVLIIP 407 (535)
Q Consensus 396 ~iL~~rGI~viP 407 (535)
. -+++|..+++
T Consensus 244 ~-A~~~G~~~~~ 254 (288)
T PRK12749 244 Q-AQQAGCKTID 254 (288)
T ss_pred H-HHHCCCeEEC
Confidence 3 3567766553
No 230
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=89.58 E-value=2.7 Score=44.84 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=28.9
Q ss_pred cEEEEEccccHHHHHHHHHHH-CCCeEEEEecCC
Q psy1913 281 KTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHD 313 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~ 313 (535)
.+|+|.|||.+|+..++.+.+ .+..+|+|.|..
T Consensus 6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~ 39 (338)
T PLN02358 6 IRIGINGFGRIGRLVARVVLQRDDVELVAVNDPF 39 (338)
T ss_pred eEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCC
Confidence 699999999999999999876 479999988743
No 231
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.58 E-value=0.78 Score=48.89 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=32.1
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD 313 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~ 313 (535)
|++++|.|.|.|.+|..+++.|...|..=+.|.|.+
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 467899999999999999999999998778888764
No 232
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=89.42 E-value=0.74 Score=51.44 Aligned_cols=38 Identities=24% Similarity=0.214 Sum_probs=32.6
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHH
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHT 331 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~ 331 (535)
++|+|+|.|..|..+|..|+..|..|+. .|.+.+.+.+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l-------------~d~~~e~l~~ 43 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLL-------------YDIRAEALAR 43 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEE-------------EeCCHHHHHH
Confidence 5899999999999999999999999987 4566666654
No 233
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.34 E-value=0.81 Score=47.16 Aligned_cols=38 Identities=21% Similarity=0.151 Sum_probs=32.7
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHH
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHT 331 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~ 331 (535)
++|+|.|.|..|...|..|+..|..|+. .|.+.+.+.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l-------------~d~~~~~~~~ 43 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLV-------------FETTEELATA 43 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEE-------------EECCHHHHHH
Confidence 3899999999999999999999999987 5566666655
No 234
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=89.27 E-value=0.91 Score=50.41 Aligned_cols=28 Identities=18% Similarity=0.000 Sum_probs=26.2
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVa 308 (535)
++|+|+|.|++|...|..|+..|..|+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v 32 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAV 32 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence 4899999999999999999999999876
No 235
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=89.20 E-value=3.2 Score=44.02 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=27.0
Q ss_pred EEEEEccccHHHHHHHHHHHC---CCeEEEEecC
Q psy1913 282 TYIVQGFGNVGFHAARYFRRG---RAKCLAIVEH 312 (535)
Q Consensus 282 ~VaIQGfGnVG~~~A~~L~e~---GakVVaVsD~ 312 (535)
||+|=|||-+|+.+.|.+.+. ..+||+|-|.
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~ 34 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL 34 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC
Confidence 589999999999999998765 5899998873
No 236
>PRK08507 prephenate dehydrogenase; Validated
Probab=89.14 E-value=0.82 Score=46.44 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=50.3
Q ss_pred EEEEEccccHHHHHHHHHHHCCC--eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccce
Q psy1913 282 TYIVQGFGNVGFHAARYFRRGRA--KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVD 358 (535)
Q Consensus 282 ~VaIQGfGnVG~~~A~~L~e~Ga--kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~D 358 (535)
+|+|.|+|++|+.+|+.|.+.|. .|++ .|.+.+.+.... +.|.+.. ..+. ++. +||
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~-------------~d~~~~~~~~~~-~~g~~~~-----~~~~~~~~--~aD 60 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYG-------------YDHNELHLKKAL-ELGLVDE-----IVSFEELK--KCD 60 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEE-------------EcCCHHHHHHHH-HCCCCcc-----cCCHHHHh--cCC
Confidence 79999999999999999999885 5665 335555554443 3332111 0122 433 499
Q ss_pred EEeeccccccccc---ccccccc-ceEEEe
Q psy1913 359 ILVPAAIEKVIRK---SNADKVQ-AKIIVE 384 (535)
Q Consensus 359 ILiPaA~~~~It~---~na~~i~-AkiIvE 384 (535)
++|-|.....+.. +-++ ++ -.+|+.
T Consensus 61 ~Vilavp~~~~~~~~~~l~~-l~~~~iv~d 89 (275)
T PRK08507 61 VIFLAIPVDAIIEILPKLLD-IKENTTIID 89 (275)
T ss_pred EEEEeCcHHHHHHHHHHHhc-cCCCCEEEE
Confidence 9999987665443 2222 33 246666
No 237
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=89.03 E-value=1.7 Score=38.90 Aligned_cols=98 Identities=21% Similarity=0.335 Sum_probs=55.4
Q ss_pred cEEEEEc----cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913 281 KTYIVQG----FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF 354 (535)
Q Consensus 281 ~~VaIQG----fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~ 354 (535)
++|||.| -++.|+.+.+.|.+.|++|+.| ||.+ +.+.+ ...++. ++ -
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~V--------np~~---------------~~i~G---~~~y~sl~e~-p 53 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPV--------NPKG---------------GEILG---IKCYPSLAEI-P 53 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEE--------STTC---------------SEETT---EE-BSSGGGC-S
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEE--------CCCc---------------eEECc---EEeeccccCC-C
Confidence 5899999 6999999999999999999985 4554 11111 112222 21 3
Q ss_pred ccceEEeeccccccc----cccccccccceEEEecCCCCCCHHHHHHHHhCCceee-cc
Q psy1913 355 DKVDILVPAAIEKVI----RKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLII-PD 408 (535)
Q Consensus 355 ~~~DILiPaA~~~~I----t~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~vi-PD 408 (535)
.++|+.+-|.....+ .+--+..+++=++.-| -..+++.+.+++.|+.++ |.
T Consensus 54 ~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 54 EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEEESS
T ss_pred CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEEeCC
Confidence 577777776543322 2222222333333333 456889999999999997 64
No 238
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=88.76 E-value=0.62 Score=48.95 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=29.0
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs 310 (535)
|+|++|+|.|+|+.|..+|+.|.+.|.+|+...
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~ 33 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGL 33 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEE
Confidence 478999999999999999999999998876533
No 239
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=88.65 E-value=5.1 Score=37.65 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=27.7
Q ss_pred cEEEEEccccHHHHHHHHHHH-CCCeEEEEecC
Q psy1913 281 KTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEH 312 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~ 312 (535)
.+|+|.|||.+|+.+++.+.+ .+..+++|.|.
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 379999999999999998875 68999998763
No 240
>PLN02712 arogenate dehydrogenase
Probab=88.63 E-value=0.6 Score=53.89 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=28.0
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCCCeEEEE
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaV 309 (535)
+.++|+|+|+|++|+.+|+.|.+.|.+|+++
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~ 81 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAH 81 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEE
Confidence 4579999999999999999999999998873
No 241
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.43 E-value=0.87 Score=45.72 Aligned_cols=105 Identities=16% Similarity=0.192 Sum_probs=59.8
Q ss_pred cEEEEEccccHHHHHHHHHHHCC---CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGR---AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD 355 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~G---akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~ 355 (535)
++|+|+|+|++|..+++.|.+.| ..|.. . + -+.+.+.++.+..| ....+. +++ .
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v-~-------~-----r~~~~~~~~~~~~g-------~~~~~~~~~~~-~ 61 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIV-S-------D-----PSPEKRAALAEEYG-------VRAATDNQEAA-Q 61 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEE-E-------c-----CCHHHHHHHHHhcC-------CeecCChHHHH-h
Confidence 47999999999999999999988 44443 2 2 33345544444322 111122 343 4
Q ss_pred cceEEeecccccccccccccccc---ceEEEecCCCCCCHHHHHHHHhCC---ceeecc
Q psy1913 356 KVDILVPAAIEKVIRKSNADKVQ---AKIIVEAANGPLTPAAHAMLLKKN---VLIIPD 408 (535)
Q Consensus 356 ~~DILiPaA~~~~It~~na~~i~---AkiIvEgAN~p~T~eA~~iL~~rG---I~viPD 408 (535)
+||+++.|.....+.+ -...++ -++|+--.|+-......+.+ .++ +.++|-
T Consensus 62 ~advVil~v~~~~~~~-v~~~l~~~~~~~vvs~~~gi~~~~l~~~~-~~~~~iv~~~P~ 118 (267)
T PRK11880 62 EADVVVLAVKPQVMEE-VLSELKGQLDKLVVSIAAGVTLARLERLL-GADLPVVRAMPN 118 (267)
T ss_pred cCCEEEEEcCHHHHHH-HHHHHHhhcCCEEEEecCCCCHHHHHHhc-CCCCcEEEecCC
Confidence 8999999986554332 222222 25777777765333333333 233 445553
No 242
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.30 E-value=0.85 Score=46.48 Aligned_cols=100 Identities=14% Similarity=0.189 Sum_probs=57.6
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCC----CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CC
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGR----AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DI 352 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~G----akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--el 352 (535)
+.++|.|+|.|++|..+++.|.+.| .+|+. +|+ + +.+.+..+....| .+..+. ++
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v-~~r-------~----~~~~~~~l~~~~g-------~~~~~~~~e~ 62 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITV-SNR-------S----NETRLQELHQKYG-------VKGTHNKKEL 62 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEE-ECC-------C----CHHHHHHHHHhcC-------ceEeCCHHHH
Confidence 4579999999999999999999988 44443 222 1 1233444444432 121222 33
Q ss_pred ccccceEEeecccccccccc---cccccc-ceEEEecCCCCCCHHHHHHH
Q psy1913 353 MFDKVDILVPAAIEKVIRKS---NADKVQ-AKIIVEAANGPLTPAAHAML 398 (535)
Q Consensus 353 l~~~~DILiPaA~~~~It~~---na~~i~-AkiIvEgAN~p~T~eA~~iL 398 (535)
. .+|||+|-|.....+.+- ..+.++ -++|+.-+++-......+.+
T Consensus 63 ~-~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~ 111 (279)
T PRK07679 63 L-TDANILFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLL 111 (279)
T ss_pred H-hcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHc
Confidence 2 478999988776554331 112232 25788877665333344443
No 243
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.24 E-value=1.1 Score=47.34 Aligned_cols=28 Identities=21% Similarity=0.145 Sum_probs=26.7
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVa 308 (535)
++|+|.|.|.+|...|..++..|..|+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l 35 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVA 35 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence 6899999999999999999999999987
No 244
>KOG0023|consensus
Probab=88.18 E-value=3.3 Score=44.05 Aligned_cols=131 Identities=14% Similarity=0.165 Sum_probs=79.3
Q ss_pred HHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCc---eEeCCCCCC-----C-CHHHHHHHHHHcCC-
Q psy1913 269 MCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDT---AIVPDKGTE-----I-NYKDLHTYKITKGT- 338 (535)
Q Consensus 269 ~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G---~iynp~G~d-----L-Di~~L~~~~~~~g~- 338 (535)
|++.|+. .|++|.|.|.|-+|.-+.++-...|++|++|+-++. -..+.=|+| . |.+.+.++.+...-
T Consensus 174 Lk~~g~~---pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~ 250 (360)
T KOG0023|consen 174 LKRSGLG---PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGG 250 (360)
T ss_pred hHHcCCC---CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCc
Confidence 4456775 599999999999999999998899999999997630 111111111 2 55555555544321
Q ss_pred ---cccCCCCcccCC--CCccccceEEeeccccccccccccccc-cceEEEecCCCC--CCHHHHHHHHhCCc
Q psy1913 339 ---IKGYPGTKSAPT--DIMFDKVDILVPAAIEKVIRKSNADKV-QAKIIVEAANGP--LTPAAHAMLLKKNV 403 (535)
Q Consensus 339 ---v~~~~~a~~i~~--ell~~~~DILiPaA~~~~It~~na~~i-~AkiIvEgAN~p--~T~eA~~iL~~rGI 403 (535)
+.+| ....+++ +++...--+..-.+.++-+.-+..+.+ +.+.|++..=|- -|.|+-+...+++|
T Consensus 251 ~~~v~~~-a~~~~~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~E~Ldf~a~~~i 322 (360)
T KOG0023|consen 251 IDTVSNL-AEHALEPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSIVGSRKETQEALDFVARGLI 322 (360)
T ss_pred ceeeeec-cccchHHHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEEEeeccccHHHHHHHHHHHHcCCC
Confidence 1122 1112222 445555555555555655555555444 677888877666 47788776655544
No 245
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=88.16 E-value=1.3 Score=41.35 Aligned_cols=82 Identities=21% Similarity=0.247 Sum_probs=49.5
Q ss_pred EEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcc-----cCCCC--cc
Q psy1913 282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKS-----APTDI--MF 354 (535)
Q Consensus 282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~-----i~~el--l~ 354 (535)
+|+|.|.||.|..+|..|.+.|..|.- |. .|.+.+..+.+.+.....+++.+. ++.++ .-
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l--------~~-----~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~ 67 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTL--------WG-----RDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEAL 67 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEE--------ET-----SCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEE--------Ee-----ccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHh
Confidence 589999999999999999999987765 33 455666666665543333444221 11122 12
Q ss_pred ccceEEeeccccccccccccccc
Q psy1913 355 DKVDILVPAAIEKVIRKSNADKV 377 (535)
Q Consensus 355 ~~~DILiPaA~~~~It~~na~~i 377 (535)
.++|+++-|.....+ .+.++++
T Consensus 68 ~~ad~IiiavPs~~~-~~~~~~l 89 (157)
T PF01210_consen 68 EDADIIIIAVPSQAH-REVLEQL 89 (157)
T ss_dssp TT-SEEEE-S-GGGH-HHHHHHH
T ss_pred CcccEEEecccHHHH-HHHHHHH
Confidence 478888877655443 3444444
No 246
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.08 E-value=2 Score=44.79 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=39.8
Q ss_pred CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHC----CCeEEE
Q psy1913 248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRG----RAKCLA 308 (535)
Q Consensus 248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~----GakVVa 308 (535)
.+.|..||...++ ..|+ +++|++|+|.|= ..||+-+|.+|.++ +|.|+.
T Consensus 133 ~PcTp~avi~lL~----------~~~i--~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtv 186 (287)
T PRK14181 133 IPCTPAGIIELLK----------YYEI--PLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTL 186 (287)
T ss_pred CCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEE
Confidence 5889999876665 4566 489999999995 56899999999998 677663
No 247
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.06 E-value=1.2 Score=44.88 Aligned_cols=106 Identities=13% Similarity=0.097 Sum_probs=59.7
Q ss_pred EEEEEccccHHHHHHHHHHHCCCeE--EEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccc
Q psy1913 282 TYIVQGFGNVGFHAARYFRRGRAKC--LAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKV 357 (535)
Q Consensus 282 ~VaIQGfGnVG~~~A~~L~e~GakV--VaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~ 357 (535)
+|.|.|+|++|+.+++.|.+.|..+ +.|. | -+.+.+.++.+..+ +.+..+. ++. .+|
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~-------~-----r~~~~~~~l~~~~~------~~~~~~~~~~~~-~~a 62 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVS-------P-----RNAQIAARLAERFP------KVRIAKDNQAVV-DRS 62 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEE-------C-----CCHHHHHHHHHHcC------CceEeCCHHHHH-HhC
Confidence 7999999999999999999888543 2333 2 23455544444331 2222222 343 479
Q ss_pred eEEeeccccccccccccccc---cceEEEecCCCCCCH-HHHHHHHh--CCceeecc
Q psy1913 358 DILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTP-AAHAMLLK--KNVLIIPD 408 (535)
Q Consensus 358 DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~-eA~~iL~~--rGI~viPD 408 (535)
||++-|.....+.+ -+..+ +-++|+.-+ ++++. +..+.+.. +-+.++|-
T Consensus 63 DvVilav~p~~~~~-vl~~l~~~~~~~vis~~-ag~~~~~l~~~~~~~~~~~r~~P~ 117 (258)
T PRK06476 63 DVVFLAVRPQIAEE-VLRALRFRPGQTVISVI-AATDRAALLEWIGHDVKLVRAIPL 117 (258)
T ss_pred CEEEEEeCHHHHHH-HHHHhccCCCCEEEEEC-CCCCHHHHHHHhCCCCCEEEECCC
Confidence 99999987544322 11122 235666544 55554 44444433 23445564
No 248
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=88.04 E-value=2.1 Score=43.40 Aligned_cols=97 Identities=11% Similarity=0.107 Sum_probs=56.0
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC-cc-c-CC-CCcccCC-CCccc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT-IK-G-YP-GTKSAPT-DIMFD 355 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~-v~-~-~~-~a~~i~~-ell~~ 355 (535)
++|+|.|.|++|..+|..|.+.|..|+.+.- +.+.+....+ .|. +. + +. .....+. +-. .
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r-------------~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-~ 65 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVAR-------------RGAHLDALNE-NGLRLEDGEITVPVLAADDPAEL-G 65 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEC-------------ChHHHHHHHH-cCCcccCCceeecccCCCChhHc-C
Confidence 3799999999999999999999998877541 1223333222 221 10 0 00 0011122 112 6
Q ss_pred cceEEeeccccccccccccccc----cc-eEEEecCCCCCCHH
Q psy1913 356 KVDILVPAAIEKVIRKSNADKV----QA-KIIVEAANGPLTPA 393 (535)
Q Consensus 356 ~~DILiPaA~~~~It~~na~~i----~A-kiIvEgAN~p~T~e 393 (535)
++|+++-|.....+. +-+..+ .. ..|+-..||.-+.+
T Consensus 66 ~~d~vila~k~~~~~-~~~~~l~~~l~~~~~iv~~~nG~~~~~ 107 (304)
T PRK06522 66 PQDLVILAVKAYQLP-AALPSLAPLLGPDTPVLFLQNGVGHLE 107 (304)
T ss_pred CCCEEEEecccccHH-HHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence 899999997755442 223333 22 46778899875443
No 249
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=87.85 E-value=1.1 Score=46.14 Aligned_cols=114 Identities=15% Similarity=0.192 Sum_probs=76.3
Q ss_pred cEEEEEccccHHHHHHHHHHHCC----CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGR----AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD 355 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~G----akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~ 355 (535)
++|.+.|+||+|+.++.-|.+.| ..|+. ++-+.+.+.+..++.|.. ..++ .-+..
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v-------------~~~~~e~~~~l~~~~g~~-------~~~~~~~~~~ 61 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIV-------------TNRSEEKRAALAAEYGVV-------TTTDNQEAVE 61 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEE-------------eCCCHHHHHHHHHHcCCc-------ccCcHHHHHh
Confidence 47999999999999999999999 35555 445566666666665422 1223 34556
Q ss_pred cceEEeeccccccccccccccc----cceEEEecCCCCCCHHHHHHHH-hCCceeeccccccccC
Q psy1913 356 KVDILVPAAIEKVIRKSNADKV----QAKIIVEAANGPLTPAAHAMLL-KKNVLIIPDIFANAGG 415 (535)
Q Consensus 356 ~~DILiPaA~~~~It~~na~~i----~AkiIvEgAN~p~T~eA~~iL~-~rGI~viPD~laNaGG 415 (535)
++|+++.|--+..+-+ ...++ +-++|+--|=|-....-.+.|- .+=+.++|-.-+-.|-
T Consensus 62 ~advv~LavKPq~~~~-vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~ 125 (266)
T COG0345 62 EADVVFLAVKPQDLEE-VLSKLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGA 125 (266)
T ss_pred hCCEEEEEeChHhHHH-HHHHhhcccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHcC
Confidence 8999999987644432 22233 4577777777666666666664 3346788988766653
No 250
>KOG0022|consensus
Probab=87.82 E-value=0.89 Score=48.11 Aligned_cols=97 Identities=23% Similarity=0.240 Sum_probs=61.0
Q ss_pred cCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCC-eEEEEecCCceE
Q psy1913 238 PLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRA-KCLAIVEHDTAI 316 (535)
Q Consensus 238 P~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaVsD~~G~i 316 (535)
|++.=-..|=.-.||||.+.-+- ... +|.+|||-|+|.||..++.-....|| ||++
T Consensus 166 Pl~kvcLLgCGvsTG~GAa~~~A------------kv~---~GstvAVfGLG~VGLav~~Gaka~GAsrIIg-------- 222 (375)
T KOG0022|consen 166 PLEKVCLLGCGVSTGYGAAWNTA------------KVE---PGSTVAVFGLGGVGLAVAMGAKAAGASRIIG-------- 222 (375)
T ss_pred ChhheeEeeccccccchhhhhhc------------ccC---CCCEEEEEecchHHHHHHHhHHhcCcccEEE--------
Confidence 44333333445678998643222 233 58999999999999999998888897 9999
Q ss_pred eCCCCCCCCHHHHHHHHHHcCCcccCCCC----cccCC---CCccccceEEeecc
Q psy1913 317 VPDKGTEINYKDLHTYKITKGTIKGYPGT----KSAPT---DIMFDKVDILVPAA 364 (535)
Q Consensus 317 ynp~G~dLDi~~L~~~~~~~g~v~~~~~a----~~i~~---ell~~~~DILiPaA 364 (535)
-|++.++....++ .| ...|-.. .++.. |+-...+|.-+.|.
T Consensus 223 -----vDiN~~Kf~~ak~-fG-aTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~ 270 (375)
T KOG0022|consen 223 -----VDINPDKFEKAKE-FG-ATEFINPKDLKKPIQEVIIEMTDGGVDYSFECI 270 (375)
T ss_pred -----EecCHHHHHHHHh-cC-cceecChhhccccHHHHHHHHhcCCceEEEEec
Confidence 5588887765543 33 1111111 11221 34456778888876
No 251
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=87.63 E-value=1.1 Score=54.32 Aligned_cols=120 Identities=12% Similarity=0.162 Sum_probs=73.9
Q ss_pred CCcEEEEEccccHHHHHHHHHHHC-CCe------------EEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCC
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRG-RAK------------CLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGT 345 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~-Gak------------VVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a 345 (535)
+.++|+|.|.|.||+..|+.|++. ++. +|+|+| .+.+.+.+..+....+ ...
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD------------~~~~~a~~la~~~~~~---~~v 632 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVAS------------LYLKDAKETVEGIENA---EAV 632 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEEC------------CCHHHHHHHHHhcCCC---ceE
Confidence 467999999999999999999875 334 455544 6666666555432110 001
Q ss_pred cc-cCC--CCcc--ccceEEeeccccccccccccc---cccceEEEecCCCCCCHHHHHHHHhCCceeecccccccc
Q psy1913 346 KS-APT--DIMF--DKVDILVPAAIEKVIRKSNAD---KVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAG 414 (535)
Q Consensus 346 ~~-i~~--ell~--~~~DILiPaA~~~~It~~na~---~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaG 414 (535)
.. +++ ++.. .++|+.|-|+.. ..+.+-|. +-+..++++.-..+.+.+.++.-+++|+.++|++-.+-|
T Consensus 633 ~lDv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~GlDPG 708 (1042)
T PLN02819 633 QLDVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMGLDPG 708 (1042)
T ss_pred EeecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCccCHH
Confidence 11 233 3443 479999988865 34544433 234578888633233334446677899999988764443
No 252
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=87.52 E-value=4.1 Score=44.36 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=27.9
Q ss_pred cEEEEEccccHHHHHHHHHHHC---CCeEEEEecC
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRG---RAKCLAIVEH 312 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~---GakVVaVsD~ 312 (535)
.+|+|-|||-+|+.+.+.|.+. ...|++|-|.
T Consensus 61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~ 95 (395)
T PLN03096 61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT 95 (395)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC
Confidence 5999999999999999999876 4699998764
No 253
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=87.43 E-value=1.3 Score=45.56 Aligned_cols=108 Identities=14% Similarity=0.115 Sum_probs=59.2
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCC------CCcccCC-CCc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYP------GTKSAPT-DIM 353 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~------~a~~i~~-ell 353 (535)
++|+|.|.|++|..+|..|++.|..|..+ +.+.+.+.+..+........+ +....+. +-.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~-------------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLW-------------ARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEA 68 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEE-------------ECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHH
Confidence 37999999999999999999999987652 233444444443211111011 1111222 112
Q ss_pred cccceEEeeccccccccc---ccccccc-ceEEEecCCCCC---CHHHHHHHHhC
Q psy1913 354 FDKVDILVPAAIEKVIRK---SNADKVQ-AKIIVEAANGPL---TPAAHAMLLKK 401 (535)
Q Consensus 354 ~~~~DILiPaA~~~~It~---~na~~i~-AkiIvEgAN~p~---T~eA~~iL~~r 401 (535)
-.+||++|-|.....+.. +-.+.+. -++|+.-.|+-. +.+..+.|++.
T Consensus 69 ~~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~ 123 (325)
T PRK00094 69 LADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEE 123 (325)
T ss_pred HhCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHH
Confidence 248999999987643221 1112222 257777776642 23334556554
No 254
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=87.25 E-value=0.86 Score=47.77 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=23.8
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCCC
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGRA 304 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga 304 (535)
.+++|+|.|.|+||+.+|..|...|.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~ 30 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGI 30 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC
Confidence 57899999999999999999998886
No 255
>PRK05717 oxidoreductase; Validated
Probab=87.24 E-value=1.6 Score=42.97 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=31.1
Q ss_pred CCCCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913 275 EPCMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 275 ~~~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV 309 (535)
+++++|++++|.| .|.+|+++|+.|.+.|++|+.+
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~ 40 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLA 40 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEE
Confidence 3568899999999 4999999999999999999884
No 256
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=87.23 E-value=0.67 Score=44.59 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=26.7
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa 308 (535)
|++++|+|.|||+-|..-|.-|.+.|..|+.
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~V 32 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIV 32 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEE
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEE
Confidence 4789999999999999999999999998875
No 257
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=87.19 E-value=5.4 Score=42.38 Aligned_cols=92 Identities=18% Similarity=0.264 Sum_probs=56.2
Q ss_pred cEEEEEccccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC-c-------cc-CCCC-cccC
Q psy1913 281 KTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT-I-------KG-YPGT-KSAP 349 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~-v-------~~-~~~a-~~i~ 349 (535)
.+|+|.|||.+|+.+++.+.+ .+..|++|+|.+ .+......+..|- + .. |.+. -.+.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~------------~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~ 69 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTK------------PDYEARVAVEKGYPLYVADPEREKAFEEAGIPVA 69 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCC------------hHHHHHHHHhcCCCccccCccccccccCCceEEc
Confidence 489999999999999999875 589999998753 1111111121220 0 00 1111 1122
Q ss_pred -C--CCccccceEEeeccccccccccccccc---cceEEEecC
Q psy1913 350 -T--DIMFDKVDILVPAAIEKVIRKSNADKV---QAKIIVEAA 386 (535)
Q Consensus 350 -~--ell~~~~DILiPaA~~~~It~~na~~i---~AkiIvEgA 386 (535)
. +++ .++|+++-|+. ...+.+++... .+++|.-+.
T Consensus 70 ~~~~el~-~~vDVVIdaT~-~~~~~e~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 70 GTIEDLL-EKADIVVDATP-GGVGAKNKELYEKAGVKAIFQGG 110 (341)
T ss_pred CChhHhh-ccCCEEEECCC-chhhHHHHHHHHHCCCEEEEcCC
Confidence 1 344 47999999984 44677776655 367777764
No 258
>PRK08265 short chain dehydrogenase; Provisional
Probab=87.18 E-value=1.1 Score=44.46 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=29.3
Q ss_pred CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913 277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV 309 (535)
+++++++.|.|. |.+|+.+|+.|.+.|++|+.+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~ 36 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIV 36 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 367899999995 899999999999999998873
No 259
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=87.12 E-value=1.4 Score=47.47 Aligned_cols=36 Identities=31% Similarity=0.465 Sum_probs=31.5
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD 313 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~ 313 (535)
|+..+|.|.|.|-+|..+|+.|...|..=+.|.|.+
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 356899999999999999999999998777777754
No 260
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=87.02 E-value=1.6 Score=43.57 Aligned_cols=91 Identities=19% Similarity=0.195 Sum_probs=56.6
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCccccceEE
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDIL 360 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DIL 360 (535)
++++|.|.||+|..+|+.|...|..|+-.+- =+++++....+..+.. .+..+++--...|||.
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~------------r~~~~~~a~a~~l~~~-----i~~~~~~dA~~~aDVV 64 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSS------------RGPKALAAAAAALGPL-----ITGGSNEDAAALADVV 64 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecC------------CChhHHHHHHHhhccc-----cccCChHHHHhcCCEE
Confidence 5899999999999999999999998876431 1244555555444321 1111111112469999
Q ss_pred eeccccccccc---cccccccceEEEecCCC
Q psy1913 361 VPAAIEKVIRK---SNADKVQAKIIVEAANG 388 (535)
Q Consensus 361 iPaA~~~~It~---~na~~i~AkiIvEgAN~ 388 (535)
+.+-.-..+.+ +-.+.+.=|||+...|.
T Consensus 65 vLAVP~~a~~~v~~~l~~~~~~KIvID~tnp 95 (211)
T COG2085 65 VLAVPFEAIPDVLAELRDALGGKIVIDATNP 95 (211)
T ss_pred EEeccHHHHHhHHHHHHHHhCCeEEEecCCC
Confidence 98876333322 22223345999998885
No 261
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=86.99 E-value=1.7 Score=45.18 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=59.2
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcC-CcccCCCCc------c--cC-C
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKG-TIKGYPGTK------S--AP-T 350 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g-~v~~~~~a~------~--i~-~ 350 (535)
++|+|.|.|.+|..+|..|.+.|..|+.+. . ..-.+...+.| .+...++.. . .+ .
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~-r--------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 67 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIG-R--------------ARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTD 67 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEe-c--------------HHHHHHHHhcCceeecCCCcceecccceeEeccC
Confidence 479999999999999999999999988743 1 11112222222 111111100 0 11 1
Q ss_pred -CCccccceEEeecccccccccccccccc-----ceEEEecCCCCCC-HHHHHHHHh
Q psy1913 351 -DIMFDKVDILVPAAIEKVIRKSNADKVQ-----AKIIVEAANGPLT-PAAHAMLLK 400 (535)
Q Consensus 351 -ell~~~~DILiPaA~~~~It~~na~~i~-----AkiIvEgAN~p~T-~eA~~iL~~ 400 (535)
+. ..+||+++-|.....+ .+-+..+. -.+|+.-.|+..+ ....+.|.+
T Consensus 68 ~~~-~~~~D~vil~vk~~~~-~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~ 122 (341)
T PRK08229 68 PAA-LATADLVLVTVKSAAT-ADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPG 122 (341)
T ss_pred hhh-ccCCCEEEEEecCcch-HHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCC
Confidence 22 2489999998764443 23333331 2567788898865 445555544
No 262
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=86.96 E-value=5.6 Score=42.34 Aligned_cols=87 Identities=21% Similarity=0.247 Sum_probs=52.3
Q ss_pred cEEEEEccccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCC-HHHHHHHHHHcCCccc----------CCCCc--
Q psy1913 281 KTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEIN-YKDLHTYKITKGTIKG----------YPGTK-- 346 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLD-i~~L~~~~~~~g~v~~----------~~~a~-- 346 (535)
.||+|=|||-+|+.+.|.+.+ ....||||-|. .|++ ..-|++|=.-+|.+.+ |.+.+
T Consensus 3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~---------~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~ 73 (331)
T PRK15425 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL---------LDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIR 73 (331)
T ss_pred eEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC---------CCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEE
Confidence 489999999999999999775 46899999774 1121 2334443333343211 11111
Q ss_pred cc---CC---CCccccceEEeeccccccccccccccc
Q psy1913 347 SA---PT---DIMFDKVDILVPAAIEKVIRKSNADKV 377 (535)
Q Consensus 347 ~i---~~---ell~~~~DILiPaA~~~~It~~na~~i 377 (535)
.. ++ ++-+..+|+.+.|+.. ..+.+.|...
T Consensus 74 v~~~~dp~~~~w~~~gvDiVle~tG~-f~s~~~a~~h 109 (331)
T PRK15425 74 VTAERDPANLKWDEVGVDVVAEATGL-FLTDETARKH 109 (331)
T ss_pred EEEcCChhhCcccccCCCEEEEecch-hhcHHHHHHH
Confidence 11 12 2225689999999954 3666666543
No 263
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=86.86 E-value=5.7 Score=42.50 Aligned_cols=94 Identities=21% Similarity=0.176 Sum_probs=55.8
Q ss_pred cEEEEEccccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHH---HHHHHHHcCCccc---CCC------Ccc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKD---LHTYKITKGTIKG---YPG------TKS 347 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~---L~~~~~~~g~v~~---~~~------a~~ 347 (535)
.||+|-|||-+|+.+.|.+.+. ...||+|-|. .|++. |++|=..+|.+.+ +.+ .+.
T Consensus 3 ~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~-----------~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~ 71 (343)
T PRK07729 3 TKVAINGFGRIGRMVFRKAIKESAFEIVAINAS-----------YPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKK 71 (343)
T ss_pred eEEEEECcChHHHHHHHHHhhcCCcEEEEecCC-----------CCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEE
Confidence 4899999999999999997754 6899998763 23333 3333223343211 011 111
Q ss_pred ---c---CC---CCccccceEEeeccccccccccccccc---cceEEEecC
Q psy1913 348 ---A---PT---DIMFDKVDILVPAAIEKVIRKSNADKV---QAKIIVEAA 386 (535)
Q Consensus 348 ---i---~~---ell~~~~DILiPaA~~~~It~~na~~i---~AkiIvEgA 386 (535)
. ++ ++-+.++|+.+.|+..- .+.+-+... .||.|.=.|
T Consensus 72 I~v~~~~dp~~~~W~~~gvDiVle~tG~f-~s~~~a~~hl~aGak~V~iSa 121 (343)
T PRK07729 72 IRLLNNRDPKELPWTDLGIDIVIEATGKF-NSKEKAILHVEAGAKKVILTA 121 (343)
T ss_pred EEEEEcCChhhCcccccCCCEEEEccchh-hhHhHHHHHHHcCCeEEEeCC
Confidence 1 12 22257899999998543 566655543 355555554
No 264
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.85 E-value=3.1 Score=45.53 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=29.3
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa 308 (535)
.+++++|+|.|.|..|..+|+.|.+.|++|+.
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~ 44 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGARVTV 44 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 46789999999999999999999999999765
No 265
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=86.80 E-value=0.71 Score=41.82 Aligned_cols=34 Identities=29% Similarity=0.506 Sum_probs=29.6
Q ss_pred CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913 280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD 313 (535)
Q Consensus 280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~ 313 (535)
.++|+|.|.|.+|..+|+.|...|..=+.|.|.+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4799999999999999999999999877777754
No 266
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=86.76 E-value=0.97 Score=47.89 Aligned_cols=34 Identities=12% Similarity=0.320 Sum_probs=29.9
Q ss_pred CcEEEEEccccHHHHHHHHHHHC-CCeEEEEecCC
Q psy1913 280 NKTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHD 313 (535)
Q Consensus 280 g~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~ 313 (535)
..||+|.|+||+|+..++.+.+. +..+|+|.|.+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~ 37 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR 37 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC
Confidence 47999999999999999999764 89999988764
No 267
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=86.70 E-value=5.2 Score=42.74 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=27.4
Q ss_pred cEEEEEccccHHHHHHHHHHHC---CCeEEEEecC
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRG---RAKCLAIVEH 312 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~---GakVVaVsD~ 312 (535)
.||+|=|||-+|+.+.|.+.+. ...||||-|.
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~ 36 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT 36 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC
Confidence 4899999999999999997754 5899998764
No 268
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=86.70 E-value=4.1 Score=43.47 Aligned_cols=95 Identities=20% Similarity=0.238 Sum_probs=57.9
Q ss_pred cEEEEEccccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHH---HHHHHHHcCCccc---CC------CCcc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKD---LHTYKITKGTIKG---YP------GTKS 347 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~---L~~~~~~~g~v~~---~~------~a~~ 347 (535)
.||+|-|||-+|+.+.|.+.+ ....||||-|.. .|++. |++|=.-+|.+.+ +. +.+.
T Consensus 3 ~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~----------~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~ 72 (337)
T PTZ00023 3 VKLGINGFGRIGRLVFRAALEREDVEVVAINDPF----------MTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKK 72 (337)
T ss_pred eEEEEECcChHHHHHHHHHHhcCCeEEEEecCCC----------CChHHhhhhheeecCCCCCCCcEEecCCEEEECCeE
Confidence 589999999999999999775 468999987632 23333 3333222333211 11 1111
Q ss_pred c------CC---CCccccceEEeeccccccccccccccc---cceEEEecC
Q psy1913 348 A------PT---DIMFDKVDILVPAAIEKVIRKSNADKV---QAKIIVEAA 386 (535)
Q Consensus 348 i------~~---ell~~~~DILiPaA~~~~It~~na~~i---~AkiIvEgA 386 (535)
| ++ .+-+.++|+.+.|+..- .+.+.++.. .||.|.-.|
T Consensus 73 i~~~~~~dp~~lpW~~~gvDiVle~tG~~-~s~~~a~~~l~aGak~V~iSa 122 (337)
T PTZ00023 73 VHVFFEKDPAAIPWGKNGVDVVCESTGVF-LTKEKAQAHLKGGAKKVIMSA 122 (337)
T ss_pred EEEEeCCChhhCCccccCCCEEEEecchh-cCHHHHHHHhhCCCEEEEeCC
Confidence 1 12 23367999999999643 666666544 366666665
No 269
>PRK06949 short chain dehydrogenase; Provisional
Probab=86.68 E-value=1.9 Score=42.14 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=31.0
Q ss_pred CCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 276 PCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 276 ~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
.++++++|.|.|- |.+|+++|+.|.+.|++|++++
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~ 40 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLAS 40 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 4578999999995 9999999999999999988743
No 270
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=86.51 E-value=1.5 Score=44.42 Aligned_cols=78 Identities=17% Similarity=0.316 Sum_probs=51.2
Q ss_pred cEEEEEccccHHHHHHHHHHHC--CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcccc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRG--RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDK 356 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~--GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~ 356 (535)
.+|.|+|+|..|..+++++.+- .+++++|.|+ |.+...+.....+ ....+. +++ .+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~------------~~ek~~~~~~~~~-------~~~~s~ide~~-~~ 60 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDR------------DEEKAKELEASVG-------RRCVSDIDELI-AE 60 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecC------------CHHHHHHHHhhcC-------CCccccHHHHh-hc
Confidence 3689999999999999988753 6888887654 2344444333322 111233 555 78
Q ss_pred ceEEeecccccccccccccccc
Q psy1913 357 VDILVPAAIEKVIRKSNADKVQ 378 (535)
Q Consensus 357 ~DILiPaA~~~~It~~na~~i~ 378 (535)
.|+++.||-.+.+-+---+-++
T Consensus 61 ~DlvVEaAS~~Av~e~~~~~L~ 82 (255)
T COG1712 61 VDLVVEAASPEAVREYVPKILK 82 (255)
T ss_pred cceeeeeCCHHHHHHHhHHHHh
Confidence 9999999987776554333333
No 271
>PRK11579 putative oxidoreductase; Provisional
Probab=86.48 E-value=3.1 Score=43.67 Aligned_cols=32 Identities=13% Similarity=0.058 Sum_probs=26.0
Q ss_pred cEEEEEccccHHH-HHHHHHHH-CCCeEEEEecC
Q psy1913 281 KTYIVQGFGNVGF-HAARYFRR-GRAKCLAIVEH 312 (535)
Q Consensus 281 ~~VaIQGfGnVG~-~~A~~L~e-~GakVVaVsD~ 312 (535)
.+|+|+|+|.+|. +.+..+.. .+++|++|+|.
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~ 38 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSS 38 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECC
Confidence 6999999999997 45666655 58999999874
No 272
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=86.34 E-value=1.4 Score=43.35 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=32.4
Q ss_pred HHhCCCCCCCCcEEEEEccccHHHHHHHHHH--HCCCeEEEEecCC
Q psy1913 270 CEIGLEPCMENKTYIVQGFGNVGFHAARYFR--RGRAKCLAIVEHD 313 (535)
Q Consensus 270 ~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~--e~GakVVaVsD~~ 313 (535)
+.+|+. ...+|+|.|+|+.|..+++.+. ..|++++++.|.+
T Consensus 77 ~~l~~~---~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d 119 (213)
T PRK05472 77 KILGLD---RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD 119 (213)
T ss_pred HHhCCC---CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence 356654 4679999999999999998743 5689999988753
No 273
>KOG0068|consensus
Probab=86.18 E-value=0.74 Score=49.05 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=30.5
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa 308 (535)
++.|||++|.|||.+|+.+|+.+.-.|.++|+
T Consensus 143 el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~ 174 (406)
T KOG0068|consen 143 ELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIG 174 (406)
T ss_pred EEeccEEEEeecccchHHHHHHHHhcCceEEe
Confidence 47899999999999999999999999999998
No 274
>PRK07340 ornithine cyclodeaminase; Validated
Probab=86.02 E-value=11 Score=39.42 Aligned_cols=110 Identities=13% Similarity=0.111 Sum_probs=70.6
Q ss_pred CCcEEEEEccccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD 355 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~ 355 (535)
..+++.|.|.|..|++.++.+.. .+.+-|.|.+ .+.+...++.++.... ++ ... .+. +.+ .
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~------------r~~~~a~~~a~~~~~~-~~-~~~-~~~~~~av-~ 187 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRG------------RTAASAAAFCAHARAL-GP-TAE-PLDGEAIP-E 187 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEc------------CCHHHHHHHHHHHHhc-CC-eeE-ECCHHHHh-h
Confidence 57899999999999999999975 6766555543 4455555555543221 11 111 222 344 4
Q ss_pred cceEEeeccc--cccccccccccccceEEEecCCCCCCHHHHHHHHhCCceee
Q psy1913 356 KVDILVPAAI--EKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLII 406 (535)
Q Consensus 356 ~~DILiPaA~--~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~vi 406 (535)
+|||+|-|+. +..++. .-+=.+-+++=|++.|-..|.+.-+..+--+|+
T Consensus 188 ~aDiVitaT~s~~Pl~~~--~~~~g~hi~~iGs~~p~~~El~~~~~~~a~v~v 238 (304)
T PRK07340 188 AVDLVVTATTSRTPVYPE--AARAGRLVVAVGAFTPDMAELAPRTVRGSRLYV 238 (304)
T ss_pred cCCEEEEccCCCCceeCc--cCCCCCEEEecCCCCCCcccCCHHHHhhCeEEE
Confidence 9999999977 445543 223347899999999977776654545543333
No 275
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=85.96 E-value=1.5 Score=45.33 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=44.7
Q ss_pred CcEEEEEccccHHHHHHHHHHHCCC--eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc
Q psy1913 280 NKTYIVQGFGNVGFHAARYFRRGRA--KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD 355 (535)
Q Consensus 280 g~~VaIQGfGnVG~~~A~~L~e~Ga--kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~ 355 (535)
-.+|+|+|+|++|..+|+.|.+.|. +|++ .|.+.+.+.... +.|... ...+. +.+ .
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~-------------~dr~~~~~~~a~-~~g~~~-----~~~~~~~~~~-~ 65 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVG-------------ADRSAETRARAR-ELGLGD-----RVTTSAAEAV-K 65 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEE-------------EECCHHHHHHHH-hCCCCc-----eecCCHHHHh-c
Confidence 4689999999999999999999885 6665 224445554443 233111 11111 233 4
Q ss_pred cceEEeecccccc
Q psy1913 356 KVDILVPAAIEKV 368 (535)
Q Consensus 356 ~~DILiPaA~~~~ 368 (535)
+||++|-|+....
T Consensus 66 ~aDvViiavp~~~ 78 (307)
T PRK07502 66 GADLVILCVPVGA 78 (307)
T ss_pred CCCEEEECCCHHH
Confidence 7999999987654
No 276
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=85.87 E-value=1.2 Score=41.19 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=23.5
Q ss_pred cEEEEEcc-ccHHHHHHHHHHHCCC--eEEE
Q psy1913 281 KTYIVQGF-GNVGFHAARYFRRGRA--KCLA 308 (535)
Q Consensus 281 ~~VaIQGf-GnVG~~~A~~L~e~Ga--kVVa 308 (535)
.+|+|.|. |+||+++|..|...+. .++-
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L 31 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVL 31 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEE
Confidence 47999999 9999999999998763 5554
No 277
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.86 E-value=1.5 Score=44.96 Aligned_cols=115 Identities=14% Similarity=0.136 Sum_probs=68.1
Q ss_pred cEEEEEccccHHHHHHHHHHHCC----CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGR----AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF 354 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~G----akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~ 354 (535)
.+|.|.|+|++|..+++.|.+.| .+|+++..+ +.+.+....... ++.....+ ++ .
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~------------~~~~~~~l~~~~------~~~~~~~~~~e~-~ 62 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSS------------KNEHFNQLYDKY------PTVELADNEAEI-F 62 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCC------------cHHHHHHHHHHc------CCeEEeCCHHHH-H
Confidence 37999999999999999999988 567664321 112233332222 11221122 33 3
Q ss_pred ccceEEeeccccccccc---ccccccc-ceEEEecCCCCCCHHHHHHHHh-CCceeecccccccc
Q psy1913 355 DKVDILVPAAIEKVIRK---SNADKVQ-AKIIVEAANGPLTPAAHAMLLK-KNVLIIPDIFANAG 414 (535)
Q Consensus 355 ~~~DILiPaA~~~~It~---~na~~i~-AkiIvEgAN~p~T~eA~~iL~~-rGI~viPD~laNaG 414 (535)
.+||++|-|.....+.+ +-.+.+. -++|+--+||-...+..+.|-. +=|.++|-.-+-.|
T Consensus 63 ~~aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~~~g 127 (277)
T PRK06928 63 TKCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSLTSAVG 127 (277)
T ss_pred hhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCEEEEeCccHHHHh
Confidence 48999998877554332 1112232 2478888998776777777643 22467776554433
No 278
>PRK08655 prephenate dehydrogenase; Provisional
Probab=85.75 E-value=1.4 Score=48.39 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=52.5
Q ss_pred cEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccce
Q psy1913 281 KTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVD 358 (535)
Q Consensus 281 ~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~D 358 (535)
++|+|.| +|.+|..+|+.|.+.|..|+++ |.+.+.+.+...+.|. ...+. +-.-.+||
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~-------------~r~~~~~~~~a~~~gv-------~~~~~~~e~~~~aD 60 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVT-------------GRDPKKGKEVAKELGV-------EYANDNIDAAKDAD 60 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEE-------------ECChHHHHHHHHHcCC-------eeccCHHHHhccCC
Confidence 4799997 8999999999999999988762 2444554444444331 11112 11124789
Q ss_pred EEeeccccccccc---ccccccc-ceEEEecCC
Q psy1913 359 ILVPAAIEKVIRK---SNADKVQ-AKIIVEAAN 387 (535)
Q Consensus 359 ILiPaA~~~~It~---~na~~i~-AkiIvEgAN 387 (535)
++|-|.....+.. +-++.++ -.+|+.-++
T Consensus 61 vVIlavp~~~~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 61 IVIISVPINVTEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred EEEEecCHHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 9988877554321 1222232 246666665
No 279
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=85.46 E-value=19 Score=37.18 Aligned_cols=122 Identities=16% Similarity=0.125 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHH
Q psy1913 251 TGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH 330 (535)
Q Consensus 251 Tg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~ 330 (535)
-++|+..+++ ..|.. .+++|.|.|.|-.++.++..|.+.|++-|.|.++ +.++..
T Consensus 106 D~~Gf~~~L~----------~~~~~---~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR------------~~~~a~ 160 (272)
T PRK12550 106 DYIAIAKLLA----------SYQVP---PDLVVALRGSGGMAKAVAAALRDAGFTDGTIVAR------------NEKTGK 160 (272)
T ss_pred CHHHHHHHHH----------hcCCC---CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC------------CHHHHH
Confidence 4677777776 12432 3569999999999999999999999875555543 334444
Q ss_pred HHHHHcCCcccCCCCcccCCCCccccceEEeeccccccccccc-------ccccc-ceEEEecCCCC-CCHHHHHHHHhC
Q psy1913 331 TYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSN-------ADKVQ-AKIIVEAANGP-LTPAAHAMLLKK 401 (535)
Q Consensus 331 ~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~~~~It~~n-------a~~i~-AkiIvEgAN~p-~T~eA~~iL~~r 401 (535)
+..+..+ + . ...++....+||+|-|+.-+.....+ ...++ ..+|.+-.=+| .|+=... -+++
T Consensus 161 ~la~~~~----~---~-~~~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~~T~ll~~-A~~~ 231 (272)
T PRK12550 161 ALAELYG----Y---E-WRPDLGGIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPAETPLIRY-ARAR 231 (272)
T ss_pred HHHHHhC----C---c-chhhcccccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEeecCCccCHHHHH-HHHC
Confidence 4443321 1 0 00112224589999998754432111 11122 35788888777 4655433 3677
Q ss_pred Cceee
Q psy1913 402 NVLII 406 (535)
Q Consensus 402 GI~vi 406 (535)
|..++
T Consensus 232 G~~~i 236 (272)
T PRK12550 232 GKTVI 236 (272)
T ss_pred cCeEe
Confidence 77664
No 280
>KOG0069|consensus
Probab=85.45 E-value=2.6 Score=44.93 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=28.5
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa 308 (535)
++.|+||.|.|||..|+.+|+.|...|..|..
T Consensus 159 ~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y 190 (336)
T KOG0069|consen 159 DLEGKTVGILGLGRIGKAIAKRLKPFGCVILY 190 (336)
T ss_pred cccCCEEEEecCcHHHHHHHHhhhhccceeee
Confidence 57999999999999999999999999955544
No 281
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=85.11 E-value=6.7 Score=39.52 Aligned_cols=30 Identities=27% Similarity=0.342 Sum_probs=27.5
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCCCe-EEE
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGRAK-CLA 308 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~Gak-VVa 308 (535)
.|.+|+|.|.|.||..+++++...|++ |++
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~ 150 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVA 150 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 688999999999999999999999997 776
No 282
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=84.99 E-value=1.5 Score=42.46 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=30.1
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
+++++|+|.| .|.+|+++++.|+++|++|++++
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~ 37 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVD 37 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 5789999999 79999999999999999998865
No 283
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.94 E-value=2.5 Score=41.72 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=64.1
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCCC---e-EEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CC
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGRA---K-CLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DI 352 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga---k-VVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--el 352 (535)
+.++|+|.|.|++|..+++.|.+.|. . |+. .+. -+.+.+.+..+..+ ....+. ++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~-~~~-----------~~~~~~~~~~~~~~-------~~~~~~~~~~ 63 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIV-SNR-----------SNVEKLDQLQARYN-------VSTTTDWKQH 63 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEE-ECC-----------CCHHHHHHHHHHcC-------cEEeCChHHH
Confidence 45789999999999999999988763 2 333 211 23455555554432 111222 34
Q ss_pred ccccceEEeeccccccccccccccc----cceEEEecCCCCCCHHHHHHHHh--CCceeecccc
Q psy1913 353 MFDKVDILVPAAIEKVIRKSNADKV----QAKIIVEAANGPLTPAAHAMLLK--KNVLIIPDIF 410 (535)
Q Consensus 353 l~~~~DILiPaA~~~~It~~na~~i----~AkiIvEgAN~p~T~eA~~iL~~--rGI~viPD~l 410 (535)
+ .++|+++-|.....+ .+-+..+ +-++|+-.+.+-......+.|.. +=+.+.|.+-
T Consensus 64 ~-~~~DiViiavp~~~~-~~v~~~l~~~~~~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a 125 (245)
T PRK07634 64 V-TSVDTIVLAMPPSAH-EELLAELSPLLSNQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTA 125 (245)
T ss_pred H-hcCCEEEEecCHHHH-HHHHHHHHhhccCCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHH
Confidence 4 479999999876554 3333333 33677777776544444444422 1234556443
No 284
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=84.89 E-value=1.5 Score=47.13 Aligned_cols=36 Identities=19% Similarity=0.418 Sum_probs=31.8
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD 313 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~ 313 (535)
|+..+|+|.|.|.+|..+++.|...|..=+.|.|.+
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 457899999999999999999999998777777765
No 285
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=84.79 E-value=2.4 Score=41.65 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=29.6
Q ss_pred CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913 277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV 309 (535)
++++++|.|.|. |.+|+.+|+.|++.|++|+.+
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~ 40 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILN 40 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEE
Confidence 468999999995 999999999999999998863
No 286
>KOG0409|consensus
Probab=84.67 E-value=1.5 Score=46.14 Aligned_cols=66 Identities=11% Similarity=0.219 Sum_probs=50.2
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCccccce
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVD 358 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~D 358 (535)
..++|-.+|.|+.|.+.+..|...|++|+. -|.+.+...++.+...++..-|. | +..+||
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV-------------~dr~~~k~~~f~~~Ga~v~~sPa------e-Vae~sD 93 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTV-------------YDRTKDKCKEFQEAGARVANSPA------E-VAEDSD 93 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEE-------------EeCcHHHHHHHHHhchhhhCCHH------H-HHhhcC
Confidence 568999999999999999999999999988 55888888888776554433211 3 334777
Q ss_pred EEeecc
Q psy1913 359 ILVPAA 364 (535)
Q Consensus 359 ILiPaA 364 (535)
++|-|-
T Consensus 94 vvitmv 99 (327)
T KOG0409|consen 94 VVITMV 99 (327)
T ss_pred EEEEEc
Confidence 777553
No 287
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=84.64 E-value=2.6 Score=43.58 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=26.3
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVa 308 (535)
++|+|.|.|.+|..+|..|.+.|.+|+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v 30 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRL 30 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEE
Confidence 4799999999999999999999999887
No 288
>PRK06849 hypothetical protein; Provisional
Probab=84.63 E-value=1.2 Score=47.30 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=28.4
Q ss_pred CCcEEEEEcccc-HHHHHHHHHHHCCCeEEEEe
Q psy1913 279 ENKTYIVQGFGN-VGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 279 ~g~~VaIQGfGn-VG~~~A~~L~e~GakVVaVs 310 (535)
+.++|.|.|.+. +|..+|+.|.+.|.+|+++.
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d 35 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILAD 35 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 358999999886 89999999999999999853
No 289
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.61 E-value=2.6 Score=43.82 Aligned_cols=95 Identities=14% Similarity=0.193 Sum_probs=53.8
Q ss_pred EEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCC------cccCC--CCc
Q psy1913 282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGT------KSAPT--DIM 353 (535)
Q Consensus 282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a------~~i~~--ell 353 (535)
+|+|.|.|++|..+|..|.+.|..|..++ -+.+.+....+.+......++. ...+. +.+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~-------------r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 68 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWG-------------RNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVL 68 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEe-------------cCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHH
Confidence 69999999999999999999998886532 3334444444332222111111 11122 223
Q ss_pred cccceEEeeccccccccc--cc-cc-cccc-eEEEecCCCC
Q psy1913 354 FDKVDILVPAAIEKVIRK--SN-AD-KVQA-KIIVEAANGP 389 (535)
Q Consensus 354 ~~~~DILiPaA~~~~It~--~n-a~-~i~A-kiIvEgAN~p 389 (535)
..++|+++-|.....+.+ +. .+ .+.. ..|+-..||-
T Consensus 69 ~~~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 69 SDNATCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred hCCCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 347899998876555443 21 22 2321 2344477776
No 290
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.60 E-value=4.6 Score=41.89 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=27.3
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCCC-eEEE
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGRA-KCLA 308 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVa 308 (535)
.|.+|+|.|.|.||..+++++...|+ +|++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~ 199 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVC 199 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence 68999999999999999999999999 5666
No 291
>PRK08339 short chain dehydrogenase; Provisional
Probab=84.45 E-value=2.6 Score=42.02 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=29.4
Q ss_pred CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913 277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV 309 (535)
+++|+++.|.|. |.+|+.+|+.|++.|++|+.+
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~ 38 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILL 38 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 478999999996 689999999999999998873
No 292
>PRK05867 short chain dehydrogenase; Provisional
Probab=84.45 E-value=2.6 Score=41.42 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=29.1
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV 309 (535)
++|+++.|.|. |.+|.++|+.|++.|++|+.+
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~ 39 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIA 39 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 67899999996 889999999999999998873
No 293
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=84.38 E-value=3.7 Score=43.35 Aligned_cols=95 Identities=15% Similarity=0.112 Sum_probs=60.0
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC--cccCCCCcccCC---C
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT--IKGYPGTKSAPT---D 351 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~--v~~~~~a~~i~~---e 351 (535)
-.|.||.|.+ .|.||+-+.++-.-+|++||+|+-+. ++..-.+++.|- ..+|.... +.. +
T Consensus 149 k~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~-------------eK~~~l~~~lGfD~~idyk~~d-~~~~L~~ 214 (340)
T COG2130 149 KAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGA-------------EKCDFLTEELGFDAGIDYKAED-FAQALKE 214 (340)
T ss_pred CCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCH-------------HHHHHHHHhcCCceeeecCccc-HHHHHHH
Confidence 3699999999 59999988887778999999998541 222222222221 11221111 110 1
Q ss_pred CccccceEEeecccccccccc-ccccccceEEEecC
Q psy1913 352 IMFDKVDILVPAAIEKVIRKS-NADKVQAKIIVEAA 386 (535)
Q Consensus 352 ll~~~~DILiPaA~~~~It~~-na~~i~AkiIvEgA 386 (535)
.---..||++.+-.+.+.+.- +--+++|||++.|+
T Consensus 215 a~P~GIDvyfeNVGg~v~DAv~~~ln~~aRi~~CG~ 250 (340)
T COG2130 215 ACPKGIDVYFENVGGEVLDAVLPLLNLFARIPVCGA 250 (340)
T ss_pred HCCCCeEEEEEcCCchHHHHHHHhhccccceeeeee
Confidence 122467999999887776642 33345799999997
No 294
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=84.38 E-value=3.1 Score=42.34 Aligned_cols=94 Identities=16% Similarity=0.175 Sum_probs=53.9
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC-cccCCCCc-----ccCC-CCc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT-IKGYPGTK-----SAPT-DIM 353 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~-v~~~~~a~-----~i~~-ell 353 (535)
++|+|.|.|++|..+|..|.+.|..|+.+. - .+.+..+. +.|. +....+.. .++. +-.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~-------------r-~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~ 65 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLV-------------R-PKRAKALR-ERGLVIRSDHGDAVVPGPVITDPEEL 65 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEe-------------c-HHHHHHHH-hCCeEEEeCCCeEEecceeecCHHHc
Confidence 379999999999999999999999887743 1 12233332 2231 11111111 1111 111
Q ss_pred cccceEEeeccccccccccccccc----c-ceEEEecCCCCC
Q psy1913 354 FDKVDILVPAAIEKVIRKSNADKV----Q-AKIIVEAANGPL 390 (535)
Q Consensus 354 ~~~~DILiPaA~~~~It~~na~~i----~-AkiIvEgAN~p~ 390 (535)
..+||+++-|.....+. +-+..+ . ..+|+--.||--
T Consensus 66 ~~~~d~vilavk~~~~~-~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 66 TGPFDLVILAVKAYQLD-AAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred cCCCCEEEEEecccCHH-HHHHHHHhhcCCCCEEEEeeCCCC
Confidence 25899999987654432 222222 2 356777888753
No 295
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=84.33 E-value=1.4 Score=44.28 Aligned_cols=83 Identities=11% Similarity=0.172 Sum_probs=51.9
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCcccc
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDK 356 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~ 356 (535)
.+++++|.|.|.|.|+..=++.|.+.|++|+.|| -++.. +|.++.+ .+.+.-. ...+.++.+ ..
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVa-----------p~i~~-el~~l~~-~~~i~~~--~r~~~~~dl-~g 85 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILS-----------KKFSK-EFLDLKK-YGNLKLI--KGNYDKEFI-KD 85 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc-----------CCCCH-HHHHHHh-CCCEEEE--eCCCChHHh-CC
Confidence 4679999999999999999999999999999988 33543 3444433 2322111 011122112 36
Q ss_pred ceEEeeccccccccccccc
Q psy1913 357 VDILVPAAIEKVIRKSNAD 375 (535)
Q Consensus 357 ~DILiPaA~~~~It~~na~ 375 (535)
+++.|-|+-...+|..-+.
T Consensus 86 ~~LViaATdD~~vN~~I~~ 104 (223)
T PRK05562 86 KHLIVIATDDEKLNNKIRK 104 (223)
T ss_pred CcEEEECCCCHHHHHHHHH
Confidence 7777777655555554433
No 296
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=84.15 E-value=5.6 Score=41.80 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=27.3
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCCC-eEEE
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGRA-KCLA 308 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVa 308 (535)
.|.+|+|.|.|.+|..++.++...|+ +|++
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~ 221 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVA 221 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEE
Confidence 57899999999999999999999999 5777
No 297
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=84.09 E-value=4.8 Score=32.98 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=32.7
Q ss_pred EEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHH
Q psy1913 282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKD 328 (535)
Q Consensus 282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~ 328 (535)
+|+|+|.|.+|-.+|..|.+.|.+|+-| +....+. .+ +|.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli-~~~~~~~--~~--~~~~~ 42 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLI-ERSDRLL--PG--FDPDA 42 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEE-ESSSSSS--TT--SSHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEE-eccchhh--hh--cCHHH
Confidence 6899999999999999999999988654 4444444 44 66554
No 298
>PRK06182 short chain dehydrogenase; Validated
Probab=84.09 E-value=1.7 Score=43.28 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=28.5
Q ss_pred CCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 279 ENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 279 ~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
+++++.|.|. |.+|+++|+.|.+.|++|++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~ 34 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAA 34 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 5789999995 8999999999999999999844
No 299
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=83.97 E-value=1.7 Score=42.27 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=30.0
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
++|+++.|.|. |.+|.++|+.|.++|++|+.++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence 68999999996 8899999999999999998854
No 300
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=83.78 E-value=2.1 Score=43.89 Aligned_cols=28 Identities=29% Similarity=0.234 Sum_probs=26.4
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVa 308 (535)
++|+|.|.|++|..+|..|+..|..|+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l 31 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTI 31 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEE
Confidence 5899999999999999999999999887
No 301
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=83.77 E-value=1.6 Score=50.61 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=62.1
Q ss_pred cEEEEEccccHHHHHHHHHHHCC--CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcccc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGR--AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDK 356 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~G--akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~ 356 (535)
++|+|.|+|++|..+++.|.+.| .+|++ .|.+.+.+.... +.|... ...+. +.+ .+
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~-------------~d~~~~~~~~a~-~~g~~~-----~~~~~~~~~~-~~ 63 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVA-------------VDRRAKSLELAV-SLGVID-----RGEEDLAEAV-SG 63 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEE-------------EECChhHHHHHH-HCCCCC-----cccCCHHHHh-cC
Confidence 68999999999999999999998 36666 224444444333 333210 01111 223 47
Q ss_pred ceEEeeccccccccccccccc----c-ceEEEecCCCC--CCHHHHHHHHhCCceeecccc
Q psy1913 357 VDILVPAAIEKVIRKSNADKV----Q-AKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIF 410 (535)
Q Consensus 357 ~DILiPaA~~~~It~~na~~i----~-AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~l 410 (535)
||+++-|.....+ .+-+..+ + -.+|...+-.. +..+..+.|....+.++|.-=
T Consensus 64 aDvVilavp~~~~-~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hP 123 (735)
T PRK14806 64 ADVIVLAVPVLAM-EKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHP 123 (735)
T ss_pred CCEEEECCCHHHH-HHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCC
Confidence 8999999875533 2222222 2 23666555433 334455555444566666543
No 302
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=83.75 E-value=2 Score=42.49 Aligned_cols=44 Identities=23% Similarity=0.370 Sum_probs=34.2
Q ss_pred HHHHHhCCCCCCCCcEEEEEccccHHHHHHHHH--HHCCCeEEEEecCC
Q psy1913 267 EYMCEIGLEPCMENKTYIVQGFGNVGFHAARYF--RRGRAKCLAIVEHD 313 (535)
Q Consensus 267 ~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L--~e~GakVVaVsD~~ 313 (535)
+..+.||.+ +-..|+|+|.||.|++++.+- .+.|.+|+++.|.+
T Consensus 74 ff~~~Lg~~---~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~ 119 (211)
T COG2344 74 FFDDLLGQD---KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVD 119 (211)
T ss_pred HHHHHhCCC---cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCC
Confidence 444568865 456899999999999998765 36799999987643
No 303
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=83.71 E-value=5.1 Score=41.10 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=28.5
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCCCe-EEEE
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGRAK-CLAI 309 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~Gak-VVaV 309 (535)
.|.+|+|.|.|.||..+++++...|++ |+++
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~ 194 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGV 194 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 489999999999999999999999999 8874
No 304
>PRK12828 short chain dehydrogenase; Provisional
Probab=83.70 E-value=1.9 Score=41.26 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=29.4
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
++++++.|.| .|.+|+++++.|.+.|++|++++
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~ 38 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIG 38 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEe
Confidence 5789999998 49999999999999999988754
No 305
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=83.65 E-value=2.1 Score=45.04 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=48.4
Q ss_pred CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH----------HcCCcccCCCCc---
Q psy1913 280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI----------TKGTIKGYPGTK--- 346 (535)
Q Consensus 280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~----------~~g~v~~~~~a~--- 346 (535)
-++|+|.|.|..|+..|..++..|+.|+. .|++.+.+.+.+. +.|.+..-....
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l-------------~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~ 69 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVL-------------KDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALA 69 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEE-------------EeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHh
Confidence 47999999999999999999997799887 5566555444322 123332211111
Q ss_pred ccCC--CCcc-ccceEEeecccccc
Q psy1913 347 SAPT--DIMF-DKVDILVPAAIEKV 368 (535)
Q Consensus 347 ~i~~--ell~-~~~DILiPaA~~~~ 368 (535)
.++. ++-. .+||+.|.|..|+.
T Consensus 70 ~i~~~~~~~~l~~~DlVIEAv~E~l 94 (307)
T COG1250 70 RITPTTDLAALKDADLVIEAVVEDL 94 (307)
T ss_pred hccccCchhHhccCCEEEEeccccH
Confidence 1222 3222 58999999977663
No 306
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=83.60 E-value=1.2 Score=45.58 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=29.4
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH 312 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~ 312 (535)
|+..+|+|.|.|-||+|+++.|.+.|..=+.+.|-
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~ 62 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDM 62 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEec
Confidence 45789999999999999999999999755555554
No 307
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.28 E-value=3 Score=40.38 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=29.6
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
++++++.|.|. |.+|+.+++.|.+.|++|+.+.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~ 36 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALID 36 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 57899999997 9999999999999999987743
No 308
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=83.18 E-value=7.2 Score=40.05 Aligned_cols=107 Identities=13% Similarity=0.101 Sum_probs=65.3
Q ss_pred CcEEEEEccccHHH-HHHHHHHHCC--CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913 280 NKTYIVQGFGNVGF-HAARYFRRGR--AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF 354 (535)
Q Consensus 280 g~~VaIQGfGnVG~-~~A~~L~e~G--akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~ 354 (535)
-.+|+|.|+|+.+. +.+..+.+.+ +.+++|+| .|.+.+.+..++.+.- ...++ ++++
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d------------~~~~~a~~~a~~~~~~------~~~~~~~~ll~ 64 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVD------------RDPERAEAFAEEFGIA------KAYTDLEELLA 64 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEec------------CCHHHHHHHHHHcCCC------cccCCHHHHhc
Confidence 46999999997764 4667777755 58999865 6677888888776521 22333 5675
Q ss_pred c-cceEEeeccccccccccccccc---cceEEEecCCCCCCHHHHHH---HHhCCcee
Q psy1913 355 D-KVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAAHAM---LLKKNVLI 405 (535)
Q Consensus 355 ~-~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA~~i---L~~rGI~v 405 (535)
. ++|+++=|+. +..+.+-+..- ...++||=-=..+..|++++ -+++|+.+
T Consensus 65 ~~~iD~V~Iatp-~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l 121 (342)
T COG0673 65 DPDIDAVYIATP-NALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKL 121 (342)
T ss_pred CCCCCEEEEcCC-ChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCce
Confidence 4 4888888774 44455444221 23677774322233556543 34455544
No 309
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=83.08 E-value=9.6 Score=40.82 Aligned_cols=31 Identities=23% Similarity=0.195 Sum_probs=27.3
Q ss_pred cEEEEEccccHHHHHHHHHHHC-CCeEEEEec
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVE 311 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD 311 (535)
.||+|=|||-+|+.+.|.+.+. +..||||-|
T Consensus 3 ~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd 34 (342)
T PTZ00353 3 ITVGINGFGPVGKAVLFASLTDPLVTVVAVND 34 (342)
T ss_pred eEEEEECCChHHHHHHHHHHhcCCcEEEEecC
Confidence 5899999999999999997754 689999876
No 310
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=82.69 E-value=4.8 Score=44.61 Aligned_cols=99 Identities=17% Similarity=0.217 Sum_probs=64.1
Q ss_pred EEEEEccccHH-HHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCccccceEE
Q psy1913 282 TYIVQGFGNVG-FHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDIL 360 (535)
Q Consensus 282 ~VaIQGfGnVG-~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DIL 360 (535)
++=+.|-|-.| +.+|+.|+++|++|-+ +|+......+..++.| .-|+
T Consensus 9 ~iHfIGIgG~GMsglA~iL~~~G~~VsG-------------SD~~~~~~t~~L~~~G-------------------~~i~ 56 (459)
T COG0773 9 KIHFIGIGGIGMSGLAEILLNLGYKVSG-------------SDLAESPMTQRLEALG-------------------IEIF 56 (459)
T ss_pred eEEEEeeccccHHHHHHHHHhCCCceEC-------------ccccccHHHHHHHHCC-------------------CeEe
Confidence 68899999988 6789999999999998 8877665544444432 2333
Q ss_pred eeccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccccc
Q psy1913 361 VPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSL 432 (535)
Q Consensus 361 iPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~ 432 (535)
+|-.-+|+.++.- +|+..|=..-.||.... +++||.|+ |+-|||..+...+|
T Consensus 57 ~gh~~~ni~~~~~-------VV~s~Ai~~~NpEi~~A-~e~~ipi~------------~r~e~Laelm~~~~ 108 (459)
T COG0773 57 IGHDAENILDADV-------VVVSNAIKEDNPEIVAA-LERGIPVI------------SRAEMLAELMRFRT 108 (459)
T ss_pred CCCCHHHcCCCce-------EEEecccCCCCHHHHHH-HHcCCCeE------------cHHHHHHHHHhCCe
Confidence 3333223332221 55555555566776554 58888875 78888887655444
No 311
>PRK06841 short chain dehydrogenase; Provisional
Probab=82.66 E-value=2.2 Score=41.63 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=30.2
Q ss_pred CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
++++++|.|.| .|.+|+++|+.|.+.|++|+.++
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~ 46 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLD 46 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 46899999999 59999999999999999988754
No 312
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=82.58 E-value=1.7 Score=42.68 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=30.2
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD 313 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~ 313 (535)
|+.++|+|.|.|-+|..+|..|.+.|..=+.+.|.+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 457899999999999999999999998655555543
No 313
>PRK07060 short chain dehydrogenase; Provisional
Probab=82.50 E-value=2.2 Score=41.27 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=30.3
Q ss_pred CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
++++++++|.|. |.+|+++++.|.+.|++|+.++
T Consensus 6 ~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~ 40 (245)
T PRK07060 6 DFSGKSVLVTGASSGIGRACAVALAQRGARVVAAA 40 (245)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEe
Confidence 467899999997 8999999999999999988744
No 314
>PRK06046 alanine dehydrogenase; Validated
Probab=82.43 E-value=5.7 Score=41.72 Aligned_cols=111 Identities=14% Similarity=0.127 Sum_probs=67.8
Q ss_pred CcEEEEEccccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcccc
Q psy1913 280 NKTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDK 356 (535)
Q Consensus 280 g~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~ 356 (535)
-++|+|.|.|..|++.++.|.. .+.+.|.|.| .+.+...+..++.....++ .....++ ++++
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~------------r~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~l~-- 193 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYD------------RTKSSAEKFVERMSSVVGC-DVTVAEDIEEACD-- 193 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEEC------------CCHHHHHHHHHHHHhhcCc-eEEEeCCHHHHhh--
Confidence 4799999999999999988874 5788888765 4445555544432110011 1122233 4554
Q ss_pred ceEEeecccc--ccccccccccccceEEEecCCCCCCHHHHHHHHhCCceee
Q psy1913 357 VDILVPAAIE--KVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLII 406 (535)
Q Consensus 357 ~DILiPaA~~--~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~vi 406 (535)
+||++-|+.. -++..+... =.+.|.+=|++-|-..|.+.-+.++.-+|+
T Consensus 194 aDiVv~aTps~~P~~~~~~l~-~g~hV~~iGs~~p~~~El~~~~~~~a~vvv 244 (326)
T PRK06046 194 CDILVTTTPSRKPVVKAEWIK-EGTHINAIGADAPGKQELDPEILLRAKVVV 244 (326)
T ss_pred CCEEEEecCCCCcEecHHHcC-CCCEEEecCCCCCccccCCHHHHhCCcEEE
Confidence 9999988863 223333221 135788889999976666655555553343
No 315
>PRK07774 short chain dehydrogenase; Provisional
Probab=82.25 E-value=2.3 Score=41.29 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=29.6
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
++++++.|.|. |-+|.++++.|.++|++|+.+.
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~ 37 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVAD 37 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 57899999996 9999999999999999998853
No 316
>PRK06545 prephenate dehydrogenase; Validated
Probab=81.99 E-value=1.7 Score=46.14 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=24.7
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVa 308 (535)
++|.|.|+|++|..+|+.|.+.|..|..
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i 28 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFI 28 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEE
Confidence 4799999999999999999999976654
No 317
>PRK05872 short chain dehydrogenase; Provisional
Probab=81.88 E-value=3.4 Score=42.04 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=36.6
Q ss_pred CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913 277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT 335 (535)
Q Consensus 277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~ 335 (535)
+++|+++.|.|. |.+|..+|+.|.+.|++|+.++ -+.+.+.+..++
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~-------------r~~~~l~~~~~~ 52 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALVD-------------LEEAELAALAAE 52 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe-------------CCHHHHHHHHHH
Confidence 478999999995 8899999999999999988743 555666555544
No 318
>PRK06057 short chain dehydrogenase; Provisional
Probab=81.87 E-value=3.4 Score=40.57 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=29.7
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV 309 (535)
++|++|.|.|. |.+|.++++.|.++|++|+.+
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~ 37 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVG 37 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 67899999997 999999999999999999884
No 319
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.79 E-value=2.9 Score=46.06 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=29.7
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEec
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE 311 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD 311 (535)
.+.+++|.|.|+|..|..+|++|++.|++|++ +|
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~-~D 45 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVV-AD 45 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEE-EC
Confidence 36789999999999999999999999997655 44
No 320
>PRK05876 short chain dehydrogenase; Provisional
Probab=81.76 E-value=3.4 Score=41.63 Aligned_cols=32 Identities=16% Similarity=0.357 Sum_probs=28.9
Q ss_pred CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEE
Q psy1913 277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVa 308 (535)
+++|+++.|.| .|.+|+++|+.|++.|++|+.
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~ 35 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARVVL 35 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 36889999998 689999999999999999886
No 321
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.76 E-value=3.1 Score=45.33 Aligned_cols=34 Identities=32% Similarity=0.479 Sum_probs=30.0
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH 312 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~ 312 (535)
+++++|.|.|+|.-|..+|++|.++|++|.+ +|.
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~-~D~ 40 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVIA-WDD 40 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEE-ECC
Confidence 6789999999999999999999999998765 553
No 322
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=81.74 E-value=2.9 Score=46.18 Aligned_cols=126 Identities=19% Similarity=0.259 Sum_probs=70.8
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC---CCcc
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT---DIMF 354 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~---ell~ 354 (535)
+.+++|+|.|+|.-|..+|++|++.|++|++ +|.+=.. .+ .... ....+ +.+.... ..+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v-~D~~~~~---~~----~~~~-~~~~~--------~i~~~~g~~~~~~~ 67 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTV-SDDRPAP---EG----LAAQ-PLLLE--------GIEVELGSHDDEDL 67 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEE-EcCCCCc---cc----hhhh-hhhcc--------CceeecCccchhcc
Confidence 4589999999999999999999999999887 3321000 00 0001 00000 1111111 1223
Q ss_pred ccceEEeec--cc------------ccccccc--ccccc--cce-EEEecCCCCC--CHHHHHHHHhCCceeeccccccc
Q psy1913 355 DKVDILVPA--AI------------EKVIRKS--NADKV--QAK-IIVEAANGPL--TPAAHAMLLKKNVLIIPDIFANA 413 (535)
Q Consensus 355 ~~~DILiPa--A~------------~~~It~~--na~~i--~Ak-iIvEgAN~p~--T~eA~~iL~~rGI~viPD~laNa 413 (535)
..+|++|.. -. +-.|..+ =+-++ .++ |-+-|.||=+ |.-...+|.+.|.... .--|.
T Consensus 68 ~~~d~vV~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~--lgGNI 145 (448)
T COG0771 68 AEFDLVVKSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDAL--LGGNI 145 (448)
T ss_pred ccCCEEEECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCce--ecccc
Confidence 445555432 11 1111111 11221 244 4468999984 4667789999998654 45788
Q ss_pred cCcchhhHh
Q psy1913 414 GGVTVSYFE 422 (535)
Q Consensus 414 GGVivSy~E 422 (535)
|.....+++
T Consensus 146 G~p~l~~~~ 154 (448)
T COG0771 146 GTPALELLE 154 (448)
T ss_pred CccHHHhhc
Confidence 877776664
No 323
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=81.72 E-value=3.8 Score=44.47 Aligned_cols=116 Identities=17% Similarity=0.171 Sum_probs=68.3
Q ss_pred cEEEEEc-cccHHHHHHHHHHHC--CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCc----cc----------CC
Q psy1913 281 KTYIVQG-FGNVGFHAARYFRRG--RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTI----KG----------YP 343 (535)
Q Consensus 281 ~~VaIQG-fGnVG~~~A~~L~e~--GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v----~~----------~~ 343 (535)
++|+|.| .|.+|......+.+. .++|++++ ++-+++.|.+..++++.- .+ +.
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLa-----------a~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~ 70 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALS-----------AGKNVELLAEQAREFRPKYVVVADEEAAKELKEALA 70 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEE-----------cCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhc
Confidence 6899999 999999998888653 78999998 567888888877776521 00 10
Q ss_pred C--CcccCC-----CCccc-cceEEeeccccccccccccccccceEEEecCCCCCCHHHHHH----HHhCCceeec
Q psy1913 344 G--TKSAPT-----DIMFD-KVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAM----LLKKNVLIIP 407 (535)
Q Consensus 344 ~--a~~i~~-----ell~~-~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~i----L~~rGI~viP 407 (535)
+ .+.... ++.+. ++|+++-|..+-.==.-....|++.--+--||-++-..+... .+++|..++|
T Consensus 71 ~~~~~v~~G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV~aG~~i~~~a~~~g~~i~P 146 (385)
T PRK05447 71 AAGIEVLAGEEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESLVCAGELVMDAAKKSGAQILP 146 (385)
T ss_pred cCCceEEEChhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHHhhHHHHHHHHHHcCCeEEE
Confidence 1 111111 34443 589888776542111223334444333445666643333332 2556666666
No 324
>PRK08177 short chain dehydrogenase; Provisional
Probab=81.62 E-value=2.5 Score=40.82 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=26.5
Q ss_pred cEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 281 KTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 281 ~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
++|.|.| .|.+|+.+|+.|.+.|++|++++
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~ 32 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATV 32 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEe
Confidence 4678887 79999999999999999998865
No 325
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=81.60 E-value=3.5 Score=40.31 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=30.1
Q ss_pred CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
.++++++.|.|. |.+|+++++.|.++|++|+.++
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~ 38 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIAD 38 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEe
Confidence 367899999996 9999999999999999998743
No 326
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=81.58 E-value=3 Score=40.26 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=28.2
Q ss_pred CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEE
Q psy1913 277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVa 308 (535)
+++++++.|.| .|.+|+++++.|.++|+.|+.
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~ 35 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGL 35 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence 36789999999 599999999999999997765
No 327
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=81.57 E-value=1.6 Score=42.68 Aligned_cols=36 Identities=14% Similarity=0.292 Sum_probs=31.6
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD 313 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~ 313 (535)
|+.++|.|.|.|.+|..+++.|...|..=+.+.|.+
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 467899999999999999999999999877777653
No 328
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=81.45 E-value=1.7 Score=43.95 Aligned_cols=104 Identities=17% Similarity=0.150 Sum_probs=61.6
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCCC----eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCccc-CC-CC
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGRA----KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSA-PT-DI 352 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga----kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i-~~-el 352 (535)
+.++|.|.|+|+.|..+++.|.+.+. +|++ +| ++ .+.+ + .... ++ ++
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~-~~-------~~-----~~~~-------~-------~~~~~~~~~~ 54 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYY-HT-------PS-----KKNT-------P-------FVYLQSNEEL 54 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEE-EC-------CC-----hhcC-------C-------eEEeCChHHH
Confidence 34689999999999999999998872 2444 22 11 1110 0 1111 22 33
Q ss_pred ccccceEEeeccccccccc---cccccccceEEEecCCCCCCHHHHHHHHh--CCceeecccc
Q psy1913 353 MFDKVDILVPAAIEKVIRK---SNADKVQAKIIVEAANGPLTPAAHAMLLK--KNVLIIPDIF 410 (535)
Q Consensus 353 l~~~~DILiPaA~~~~It~---~na~~i~AkiIvEgAN~p~T~eA~~iL~~--rGI~viPD~l 410 (535)
. .+||++|-|.....+.. +..+.+..+.|+--+++-......++|.. +-+.++|-.-
T Consensus 55 ~-~~~D~Vilavkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p 116 (260)
T PTZ00431 55 A-KTCDIIVLAVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEMVGVEAKIVRVMPNTP 116 (260)
T ss_pred H-HhCCEEEEEeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHHcCCCCeEEEECCCch
Confidence 3 48899999976555321 22333444677777877765555666532 2356666654
No 329
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=81.45 E-value=1.9 Score=44.69 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=24.0
Q ss_pred cEEEEEccccHHHHHHHHHHHCCC--eEEE
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRA--KCLA 308 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~Ga--kVVa 308 (535)
++|+|.|.|+||+.+|..|...|. .|+.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l 30 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVL 30 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEE
Confidence 379999999999999999999994 4544
No 330
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=81.16 E-value=2.5 Score=44.00 Aligned_cols=91 Identities=22% Similarity=0.215 Sum_probs=53.0
Q ss_pred cEEEEEccccHHHHHHHHHH-HCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-cc
Q psy1913 281 KTYIVQGFGNVGFHAARYFR-RGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-DK 356 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~-e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-~~ 356 (535)
.+|+|.|.|++|...+..+. ..+..+++|+|.+ .+-+.+ +..++.|.- ...+. +++. -+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d----------~es~~l-a~A~~~Gi~------~~~~~~e~ll~~~d 64 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGID----------PESDGL-ARARELGVK------TSAEGVDGLLANPD 64 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCC----------cccHHH-HHHHHCCCC------EEECCHHHHhcCCC
Confidence 48999999999996655454 5689999998742 111222 233344311 11222 3443 46
Q ss_pred ceEEeeccccccccccccccc---cceEEEe--cCCCC
Q psy1913 357 VDILVPAAIEKVIRKSNADKV---QAKIIVE--AANGP 389 (535)
Q Consensus 357 ~DILiPaA~~~~It~~na~~i---~AkiIvE--gAN~p 389 (535)
+|+.+-|+. +..+.+++... .+.+|+| .+++|
T Consensus 65 IDaV~iaTp-~~~H~e~a~~al~aGk~VIdekPa~~~p 101 (285)
T TIGR03215 65 IDIVFDATS-AKAHARHARLLAELGKIVIDLTPAAIGP 101 (285)
T ss_pred CCEEEECCC-cHHHHHHHHHHHHcCCEEEECCccccCC
Confidence 888888884 44666666554 2455554 34555
No 331
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.12 E-value=2.1 Score=47.16 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=30.3
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH 312 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~ 312 (535)
++|++|+|.|+|.-|..+|++|.+.|++|+. +|.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~-~d~ 39 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQAL-TLF 39 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEE-EcC
Confidence 5689999999999999999999999999876 553
No 332
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=81.09 E-value=2.2 Score=43.82 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=28.6
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCCCeEEEEec
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE 311 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD 311 (535)
.+.+|+|.|.|.||..+++++...|+++|.++|
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~ 176 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWE 176 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeC
Confidence 577899999999999999999999998766554
No 333
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=80.97 E-value=1.2 Score=47.37 Aligned_cols=113 Identities=16% Similarity=0.185 Sum_probs=62.5
Q ss_pred EEEEccccHHHHHHHHHHHCCC--eEEEEecCCceEeCCCCCCCCHHHHHHHHHHc-C-CcccCCCCcccCC--CC--cc
Q psy1913 283 YIVQGFGNVGFHAARYFRRGRA--KCLAIVEHDTAIVPDKGTEINYKDLHTYKITK-G-TIKGYPGTKSAPT--DI--MF 354 (535)
Q Consensus 283 VaIQGfGnVG~~~A~~L~e~Ga--kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~-g-~v~~~~~a~~i~~--el--l~ 354 (535)
|.|.|.|.||+.+++.|.+.+- +|+. +|-+.+.+.+..++. + .+... .. .+.+ ++ +-
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~v-------------a~r~~~~~~~~~~~~~~~~~~~~-~~-d~~~~~~l~~~~ 65 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTV-------------ADRNPEKAERLAEKLLGDRVEAV-QV-DVNDPESLAELL 65 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEE-------------EESSHHHHHHHHT--TTTTEEEE-E---TTTHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEE-------------EECCHHHHHHHHhhccccceeEE-EE-ecCCHHHHHHHH
Confidence 6799999999999999999874 5665 457788887776542 1 11100 00 1122 22 23
Q ss_pred ccceEEeecccccccccccc---ccccceEEEecCCCCCC---HHHHHHHHhCCceeecccccccc
Q psy1913 355 DKVDILVPAAIEKVIRKSNA---DKVQAKIIVEAANGPLT---PAAHAMLLKKNVLIIPDIFANAG 414 (535)
Q Consensus 355 ~~~DILiPaA~~~~It~~na---~~i~AkiIvEgAN~p~T---~eA~~iL~~rGI~viPD~laNaG 414 (535)
.+|||+|-|+... .+..-+ -+..+.+|= .+. .+ .+-++..+++|+.++++.=.+.|
T Consensus 66 ~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD-~~~--~~~~~~~l~~~a~~~g~~~l~~~G~~PG 127 (386)
T PF03435_consen 66 RGCDVVINCAGPF-FGEPVARACIEAGVHYVD-TSY--VTEEMLALDEEAKEAGVTALPGCGFDPG 127 (386)
T ss_dssp TTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEE-SS---HHHHHHHCHHHHHHTTSEEE-S-BTTTB
T ss_pred hcCCEEEECCccc-hhHHHHHHHHHhCCCeec-cch--hHHHHHHHHHHHHhhCCEEEeCcccccc
Confidence 5889999999765 222211 122446555 111 12 23345667899999998766654
No 334
>PRK08628 short chain dehydrogenase; Provisional
Probab=80.96 E-value=2.7 Score=41.23 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=30.2
Q ss_pred CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
+|+|+++.|.| .|.+|+++|+.|.++|++|+.++
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~ 38 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFG 38 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEc
Confidence 47899999999 58899999999999999988753
No 335
>PRK09186 flagellin modification protein A; Provisional
Probab=80.94 E-value=3.8 Score=39.96 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=29.0
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV 309 (535)
+++++|.|.|. |.+|+++|+.|.+.|++|+.+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~ 34 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAA 34 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 46899999995 899999999999999999885
No 336
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=80.89 E-value=4.1 Score=39.60 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=29.5
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
+++++|.|.| .|.+|+++|+.|.+.|++|+.+.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~ 35 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIAD 35 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEe
Confidence 4678999999 69999999999999999998853
No 337
>PRK06125 short chain dehydrogenase; Provisional
Probab=80.80 E-value=4 Score=40.19 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=29.8
Q ss_pred CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
+++++++.|.|. |.+|+.+|+.|.+.|++|+.++
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~ 38 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVA 38 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Confidence 367899999997 7899999999999999988843
No 338
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=80.80 E-value=1.8 Score=45.52 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=28.0
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCCC-eEEEEecCC
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGRA-KCLAIVEHD 313 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaVsD~~ 313 (535)
+.++|+|.|.|+||+.+|..++..|. . +.+.|.+
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi~ 39 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDIV 39 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCC
Confidence 45799999999999999999998885 6 6655643
No 339
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=80.67 E-value=3.6 Score=42.45 Aligned_cols=79 Identities=15% Similarity=0.203 Sum_probs=52.0
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC---cc------cCCCCcc
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT---IK------GYPGTKS 347 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~---v~------~~~~a~~ 347 (535)
+.++++.|.| .+..|+.+|+.|+++|+.||-|+ =+.+.|.+.+++-.. +. ++...+.
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLva-------------R~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~ 70 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVA-------------RREDKLEALAKELEDKTGVEVEVIPADLSDPEA 70 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEe-------------CcHHHHHHHHHHHHHhhCceEEEEECcCCChhH
Confidence 5789999999 59999999999999999999877 445666665543211 10 1111111
Q ss_pred cCC---CCcc--ccceEEeeccccccc
Q psy1913 348 APT---DIMF--DKVDILVPAAIEKVI 369 (535)
Q Consensus 348 i~~---ell~--~~~DILiPaA~~~~I 369 (535)
+.. ++.+ .++||||-+|.-+.-
T Consensus 71 ~~~l~~~l~~~~~~IdvLVNNAG~g~~ 97 (265)
T COG0300 71 LERLEDELKERGGPIDVLVNNAGFGTF 97 (265)
T ss_pred HHHHHHHHHhcCCcccEEEECCCcCCc
Confidence 111 1222 489999999985443
No 340
>PRK06138 short chain dehydrogenase; Provisional
Probab=80.66 E-value=2.6 Score=40.87 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=29.6
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
++++++.|.|. |.+|+++|+.|.+.|++|+.++
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~ 36 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVAD 36 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEec
Confidence 57899999985 8999999999999999998854
No 341
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=80.61 E-value=2 Score=42.02 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=31.6
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD 313 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~ 313 (535)
|+..+|.|.|.|.+|..+++.|...|.+=+.+.|.+
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 457899999999999999999999999877777754
No 342
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.44 E-value=2.9 Score=40.43 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=29.2
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
+++++|.|.|. |.+|.++++.|.++|++|++++
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~ 36 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTD 36 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 57889999994 8999999999999999987753
No 343
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=80.26 E-value=3 Score=40.46 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=29.5
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEec
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVE 311 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD 311 (535)
|+++++.|.|. |.+|+++|+.|.+.|++|+.+.+
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~ 35 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCG 35 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcC
Confidence 46789999985 99999999999999999988554
No 344
>PLN02240 UDP-glucose 4-epimerase
Probab=80.26 E-value=2.7 Score=43.29 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=29.9
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
+++++|.|.|. |.+|+++++.|.+.|++|++++
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 67899999985 9999999999999999999865
No 345
>PRK12742 oxidoreductase; Provisional
Probab=80.12 E-value=3.2 Score=39.94 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=29.0
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV 309 (535)
+++++|.|.|. |.+|+.+|+.|.+.|++|+.+
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~ 36 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFT 36 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEe
Confidence 67899999995 899999999999999998864
No 346
>PLN02206 UDP-glucuronate decarboxylase
Probab=79.98 E-value=2.5 Score=46.33 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=29.4
Q ss_pred CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
++++|.|.| .|-||+++++.|.++|.+|+++.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEe
Confidence 679999999 59999999999999999999864
No 347
>PRK07576 short chain dehydrogenase; Provisional
Probab=79.95 E-value=4.4 Score=40.32 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=29.7
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
++++++.|.|- |.+|.++++.|.+.|++|+.++
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~ 40 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGANVAVAS 40 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 67899999986 8999999999999999998853
No 348
>PRK10637 cysG siroheme synthase; Provisional
Probab=79.89 E-value=2.3 Score=46.89 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=31.8
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs 310 (535)
+|+|++|.|.|.|+|+..=++.|.+.|++|+.||
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~vis 42 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGARLTVNA 42 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEc
Confidence 4789999999999999999999999999999887
No 349
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=79.81 E-value=4.1 Score=43.13 Aligned_cols=74 Identities=20% Similarity=0.241 Sum_probs=46.6
Q ss_pred CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC-cccCCCCcccCCCCc----c
Q psy1913 280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT-IKGYPGTKSAPTDIM----F 354 (535)
Q Consensus 280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~-v~~~~~a~~i~~ell----~ 354 (535)
+.+|+|.|.|++|..++..+...|+..|.+ .|++.+.|...++..+. ...++..+.....++ .
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv------------~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g 236 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIV------------VDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGG 236 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEE------------eCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCC
Confidence 349999999999999988888899755444 44777887666654432 111111110000111 2
Q ss_pred ccceEEeeccc
Q psy1913 355 DKVDILVPAAI 365 (535)
Q Consensus 355 ~~~DILiPaA~ 365 (535)
..+|+.+.|+.
T Consensus 237 ~g~D~vie~~G 247 (350)
T COG1063 237 RGADVVIEAVG 247 (350)
T ss_pred CCCCEEEECCC
Confidence 36899999986
No 350
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=79.75 E-value=4.3 Score=42.35 Aligned_cols=36 Identities=14% Similarity=0.415 Sum_probs=31.7
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD 313 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~ 313 (535)
|+..+|.|.|.|.+|..+|+.|...|.+=+.|.|.+
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d 52 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTK 52 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 356899999999999999999999999888877753
No 351
>PRK07831 short chain dehydrogenase; Provisional
Probab=79.75 E-value=4.4 Score=39.94 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=27.9
Q ss_pred CCCcEEEEEcc-c-cHHHHHHHHHHHCCCeEEE
Q psy1913 278 MENKTYIVQGF-G-NVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 278 l~g~~VaIQGf-G-nVG~~~A~~L~e~GakVVa 308 (535)
++++++.|.|. | .+|+.+++.|.++|++|+.
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~ 47 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVI 47 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEE
Confidence 57899999996 6 6999999999999999876
No 352
>PRK07326 short chain dehydrogenase; Provisional
Probab=79.75 E-value=5.2 Score=38.48 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=28.8
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
+.++++.|.| .|.+|+++++.|.+.|++|++++
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~ 37 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITA 37 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEee
Confidence 4678999998 59999999999999999988843
No 353
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=79.70 E-value=3.1 Score=42.95 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=31.0
Q ss_pred CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
++++++|.|.|. |-+|+++++.|.+.|++|+++.
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~ 37 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGII 37 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEe
Confidence 578999999995 9999999999999999999865
No 354
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=79.70 E-value=2.8 Score=43.60 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=29.6
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
++|++|.|.|. |-+|+++++.|.+.|++|++++
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~ 35 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYS 35 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEe
Confidence 46899999995 9999999999999999999864
No 355
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=79.70 E-value=5.3 Score=41.27 Aligned_cols=131 Identities=16% Similarity=0.141 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHH
Q psy1913 252 GRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHT 331 (535)
Q Consensus 252 g~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~ 331 (535)
+.|...+++. .+. +++++++.|.|.|..|+.++..|.+.|++-|.|.+++ + -..+++.+
T Consensus 110 ~~G~~~~l~~----------~~~--~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~-----~----~~~~~a~~ 168 (289)
T PRK12548 110 GLGFVRNLRE----------HGV--DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK-----D----DFYERAEQ 168 (289)
T ss_pred HHHHHHHHHh----------cCC--CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC-----c----hHHHHHHH
Confidence 6777666651 232 3688999999999999999999999999845544432 0 00123333
Q ss_pred HHHHcCCcccCCCCc----ccCC--CC--ccccceEEeecccccccccc---cc---cccc-ceEEEecCCCC-CCHHHH
Q psy1913 332 YKITKGTIKGYPGTK----SAPT--DI--MFDKVDILVPAAIEKVIRKS---NA---DKVQ-AKIIVEAANGP-LTPAAH 395 (535)
Q Consensus 332 ~~~~~g~v~~~~~a~----~i~~--el--l~~~~DILiPaA~~~~It~~---na---~~i~-AkiIvEgAN~p-~T~eA~ 395 (535)
..++... .++... .++. ++ .-..+||+|-|+.-+.-... .. ..+. ..+|.+-.=+| -|+=..
T Consensus 169 l~~~l~~--~~~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~ 246 (289)
T PRK12548 169 TAEKIKQ--EVPECIVNVYDLNDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYNPKKTKLLE 246 (289)
T ss_pred HHHHHhh--cCCCceeEEechhhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCCCCCHHHH
Confidence 3222110 011100 1111 11 11357999988864432211 11 1232 35788888887 465443
Q ss_pred HHHHhCCceee
Q psy1913 396 AMLLKKNVLII 406 (535)
Q Consensus 396 ~iL~~rGI~vi 406 (535)
. -+++|..++
T Consensus 247 ~-A~~~G~~~~ 256 (289)
T PRK12548 247 D-AEAAGCKTV 256 (289)
T ss_pred H-HHHCCCeee
Confidence 3 366776554
No 356
>PRK07062 short chain dehydrogenase; Provisional
Probab=79.68 E-value=4.4 Score=39.96 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=29.6
Q ss_pred CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913 277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV 309 (535)
+++|+++.|.|. |.+|+++|+.|.+.|++|+.+
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~ 38 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAIC 38 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEE
Confidence 478999999996 789999999999999999874
No 357
>PRK07063 short chain dehydrogenase; Provisional
Probab=79.67 E-value=4.6 Score=39.67 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=29.2
Q ss_pred CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913 277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV 309 (535)
.++++++.|.| .|.+|+++|+.|.+.|++|+.+
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~ 37 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALA 37 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 36789999999 4789999999999999998874
No 358
>PRK09072 short chain dehydrogenase; Provisional
Probab=79.63 E-value=4.5 Score=39.91 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=29.4
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
++++++.|.| .|-+|..+++.|.++|++|++++
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~ 36 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVG 36 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEE
Confidence 5788999999 59999999999999999988854
No 359
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.55 E-value=2.6 Score=46.63 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=30.8
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD 313 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~ 313 (535)
+++++|.|.|+|..|..+|++|++.|++|.+ +|.+
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~-~D~~ 39 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRV-ADTR 39 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEE-EcCC
Confidence 5788999999999999999999999999765 6653
No 360
>PRK06194 hypothetical protein; Provisional
Probab=79.48 E-value=4.3 Score=40.53 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=28.6
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV 309 (535)
++++++.|.|. |.+|+++|+.|.+.|++|+.+
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~ 36 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLA 36 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEE
Confidence 67889999984 899999999999999998874
No 361
>PRK12939 short chain dehydrogenase; Provisional
Probab=79.43 E-value=5.2 Score=38.67 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=29.9
Q ss_pred CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913 277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV 309 (535)
.++++++.|.| .|.+|+++|+.|.++|++|+.+
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~ 37 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFN 37 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEE
Confidence 46789999999 5999999999999999999885
No 362
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.24 E-value=2.8 Score=43.43 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=27.6
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVa 308 (535)
++++|.|.|.|++|..+|+.|.+.|..|+.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~ 32 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRV 32 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEE
Confidence 567999999999999999999999999864
No 363
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=79.19 E-value=5.1 Score=39.23 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=30.0
Q ss_pred CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
.+++++++|.|. |.+|+.+|+.|.+.|++|+.++
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~ 42 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNG 42 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe
Confidence 368999999995 8999999999999999998843
No 364
>PRK06197 short chain dehydrogenase; Provisional
Probab=79.18 E-value=3 Score=42.42 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=31.1
Q ss_pred CCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 276 PCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 276 ~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
++++|++|.|.|. |.+|+++|+.|.+.|++|+.++
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~ 47 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAV 47 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 3678999999994 9999999999999999998855
No 365
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=79.04 E-value=4.6 Score=39.37 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=29.3
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
+++++|.|.| .|.+|.++++.|.+.|++|+.++
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~ 43 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGATVILLG 43 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEe
Confidence 6789999998 58899999999999999998743
No 366
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=79.03 E-value=5.3 Score=41.38 Aligned_cols=128 Identities=13% Similarity=0.037 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHH
Q psy1913 251 TGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH 330 (535)
Q Consensus 251 Tg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~ 330 (535)
-|.|...+++. .+ .++++++|.|.|.|-+++.++-.|.+.|++-|.|.++ +.++..
T Consensus 110 D~~Gf~~~L~~----------~~--~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR------------~~~ka~ 165 (283)
T PRK14027 110 DVSGFGRGMEE----------GL--PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADL------------DTSRAQ 165 (283)
T ss_pred CHHHHHHHHHh----------cC--cCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcC------------CHHHHH
Confidence 46787777762 11 1357899999999999999999999999876766654 233433
Q ss_pred HHHHHcCCcccCCCC--cccC--C--CCccccceEEeecccccccccc----cccccc-ceEEEecCCCC-CCHHHHHHH
Q psy1913 331 TYKITKGTIKGYPGT--KSAP--T--DIMFDKVDILVPAAIEKVIRKS----NADKVQ-AKIIVEAANGP-LTPAAHAML 398 (535)
Q Consensus 331 ~~~~~~g~v~~~~~a--~~i~--~--ell~~~~DILiPaA~~~~It~~----na~~i~-AkiIvEgAN~p-~T~eA~~iL 398 (535)
+..+... ..|+.. ...+ . +.+ ..+||+|-|+.-+.-... ....+. ..+|.+-.-+| .|+=... -
T Consensus 166 ~La~~~~--~~~~~~~~~~~~~~~~~~~~-~~~divINaTp~Gm~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~-A 241 (283)
T PRK14027 166 ALADVIN--NAVGREAVVGVDARGIEDVI-AAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIETELLKA-A 241 (283)
T ss_pred HHHHHHh--hccCcceEEecCHhHHHHHH-hhcCEEEEcCCCCCCCCCCCCCCHHHcCCCcEEEEcccCCCCCHHHHH-H
Confidence 3333211 011110 0111 0 112 368999988764432111 111222 45788888777 4654433 3
Q ss_pred HhCCceee
Q psy1913 399 LKKNVLII 406 (535)
Q Consensus 399 ~~rGI~vi 406 (535)
+++|..++
T Consensus 242 ~~~G~~~~ 249 (283)
T PRK14027 242 RALGCETL 249 (283)
T ss_pred HHCCCEEE
Confidence 66776554
No 367
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.82 E-value=3.6 Score=40.72 Aligned_cols=33 Identities=15% Similarity=0.309 Sum_probs=29.5
Q ss_pred CCCCcEEEEEccc---cHHHHHHHHHHHCCCeEEEE
Q psy1913 277 CMENKTYIVQGFG---NVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 277 ~l~g~~VaIQGfG---nVG~~~A~~L~e~GakVVaV 309 (535)
.++|++++|.|.+ .+|+.+|+.|++.|++|+.+
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~ 39 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYT 39 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEe
Confidence 3689999999985 79999999999999999874
No 368
>PRK06523 short chain dehydrogenase; Provisional
Probab=78.75 E-value=3.5 Score=40.47 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=30.4
Q ss_pred CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
+++|+++.|.| .|.+|+++|+.|.+.|++|+.++
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~ 40 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGARVVTTA 40 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEe
Confidence 47899999999 48999999999999999988764
No 369
>PRK12829 short chain dehydrogenase; Provisional
Probab=78.69 E-value=5.4 Score=38.98 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=29.4
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
++++++.|.|. |.+|+++++.|.++|++|+.+.
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~ 42 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCD 42 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 67899999984 9999999999999999988744
No 370
>PRK07890 short chain dehydrogenase; Provisional
Probab=78.69 E-value=5 Score=39.14 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=28.6
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV 309 (535)
++++++.|.|. |.+|+++|+.|+++|++|+.+
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~ 35 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLA 35 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEE
Confidence 46899999995 899999999999999998874
No 371
>PRK08703 short chain dehydrogenase; Provisional
Probab=78.55 E-value=3.8 Score=39.77 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=29.8
Q ss_pred CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
+|+++++.|.|. |.+|.++|+.|.+.|++|+.++
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~ 37 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVA 37 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 367899999995 8999999999999999988754
No 372
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.45 E-value=3.7 Score=39.57 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=29.3
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
+++++|.|.|. |.+|+++++.|.+.|++|+.++
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~ 36 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINS 36 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 57899999996 7899999999999999998853
No 373
>PRK06500 short chain dehydrogenase; Provisional
Probab=78.36 E-value=6.3 Score=38.15 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=29.0
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV 309 (535)
+++++|.|.|. |.+|+++++.|.+.|++|+.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~ 36 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAIT 36 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 57899999995 999999999999999999874
No 374
>PRK07806 short chain dehydrogenase; Provisional
Probab=78.21 E-value=3.9 Score=39.71 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=29.8
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
++++++.|.|. |.+|+++++.|.+.|++|++++
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~ 37 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNY 37 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 67899999995 9999999999999999998754
No 375
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=78.19 E-value=5.9 Score=42.00 Aligned_cols=94 Identities=12% Similarity=0.132 Sum_probs=56.2
Q ss_pred cEEEEEcc-ccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcccc
Q psy1913 281 KTYIVQGF-GNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDK 356 (535)
Q Consensus 281 ~~VaIQGf-GnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~ 356 (535)
++|+|.|. |.||+.+++.|.+. +.+++++++.. ..| -.+. + ..+.+...... .+.. +....+
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-----~~g--~~l~---~---~~~~~~~~~~~-~~~~~~~~~~~~ 68 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-----SAG--KPLS---D---VHPHLRGLVDL-VLEPLDPEILAG 68 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-----ccC--cchH---H---hCcccccccCc-eeecCCHHHhcC
Confidence 68999997 99999999999886 78999988742 233 1111 1 11111111010 1121 222357
Q ss_pred ceEEeeccccccccccccccc-cc-eEEEecCCCC
Q psy1913 357 VDILVPAAIEKVIRKSNADKV-QA-KIIVEAANGP 389 (535)
Q Consensus 357 ~DILiPaA~~~~It~~na~~i-~A-kiIvEgAN~p 389 (535)
+|+++-|+. +..+.+.+..+ ++ +.|+.-++..
T Consensus 69 vD~Vf~alP-~~~~~~~v~~a~~aG~~VID~S~~f 102 (343)
T PRK00436 69 ADVVFLALP-HGVSMDLAPQLLEAGVKVIDLSADF 102 (343)
T ss_pred CCEEEECCC-cHHHHHHHHHHHhCCCEEEECCccc
Confidence 999988774 45667776666 33 5677776655
No 376
>PRK07035 short chain dehydrogenase; Provisional
Probab=78.11 E-value=5.6 Score=38.82 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=29.8
Q ss_pred CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
++++++|.|.| .|.+|.++++.|.+.|++|+.++
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~ 39 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSS 39 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 36788999988 68999999999999999999853
No 377
>PRK06172 short chain dehydrogenase; Provisional
Probab=78.10 E-value=5.6 Score=38.85 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=29.8
Q ss_pred CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
.++++++.|.| .|.+|.++|+.|.+.|++|+.++
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~ 38 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVAD 38 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Confidence 36789999999 58999999999999999988753
No 378
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=78.08 E-value=3.8 Score=47.80 Aligned_cols=38 Identities=26% Similarity=0.183 Sum_probs=32.5
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHH
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHT 331 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~ 331 (535)
++|+|.|.|.+|..+|..++..|..|+- .|.+.+.|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l-------------~d~~~~~l~~ 351 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIM-------------KDINQKALDL 351 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEE-------------EeCCHHHHHH
Confidence 5899999999999999999999999987 5566666544
No 379
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.06 E-value=3.9 Score=39.70 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=28.9
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
+++++++|.| .|.+|+++|+.|.+.|++|+.+.
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~ 36 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNY 36 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEc
Confidence 4678999998 78999999999999999998644
No 380
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=78.04 E-value=3.2 Score=43.30 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=30.7
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEec
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVE 311 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD 311 (535)
+++++|.|.|. |-+|+++++.|.++|.+|+++.-
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 57899999995 99999999999999999998753
No 381
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.01 E-value=3 Score=45.64 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=29.9
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH 312 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~ 312 (535)
+.+++|.|.|+|.-|..+|++|.+.|++|.+ +|.
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~-~D~ 45 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTA-FDK 45 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEE-ECC
Confidence 4678999999999999999999999998765 654
No 382
>PRK06196 oxidoreductase; Provisional
Probab=77.99 E-value=5.3 Score=40.96 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=30.3
Q ss_pred CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
++++++|.|.|. |.+|+++|+.|++.|++|+.++
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~ 57 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPA 57 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 468899999996 8899999999999999998854
No 383
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=77.82 E-value=4.3 Score=38.93 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=29.7
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEec
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVE 311 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD 311 (535)
++++++.|.|. |.+|+++++.|.+.|++|+.++.
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~ 37 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGANVVINYA 37 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 57789999994 89999999999999999977654
No 384
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=77.71 E-value=6.1 Score=38.68 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=28.4
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEE
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVa 308 (535)
++++++.|.| .|.+|+++|+.|.+.|++|+.
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl 38 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIII 38 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEE
Confidence 6789999998 588999999999999999987
No 385
>KOG0455|consensus
Probab=77.71 E-value=3 Score=42.99 Aligned_cols=42 Identities=12% Similarity=0.273 Sum_probs=33.0
Q ss_pred CCcEEEEEccccHHHHHHHHHHH------CC---CeEEEEecCCceEeCCC
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRR------GR---AKCLAIVEHDTAIVPDK 320 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e------~G---akVVaVsD~~G~iynp~ 320 (535)
+...|+|.|+|+||+++...+.. ++ ..||+|+|+.+.+...+
T Consensus 2 k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD 52 (364)
T KOG0455|consen 2 KKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKD 52 (364)
T ss_pred ccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccc
Confidence 34679999999999999776653 22 58999999988877544
No 386
>PRK05866 short chain dehydrogenase; Provisional
Probab=77.66 E-value=5.2 Score=40.80 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=30.0
Q ss_pred CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
.++++++.|.|. |.+|.++|+.|++.|++|+.++
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~ 71 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRGATVVAVA 71 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 467899999995 9999999999999999998843
No 387
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=77.64 E-value=5.8 Score=38.91 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=28.8
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV 309 (535)
++++++.|.| .|.+|.++|+.|.++|++|+.+
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~ 36 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIA 36 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE
Confidence 5688999998 5999999999999999999874
No 388
>PRK07825 short chain dehydrogenase; Provisional
Probab=77.57 E-value=5.5 Score=39.51 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=28.9
Q ss_pred CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913 277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV 309 (535)
+++++++.|.|. |.+|+.+|+.|.+.|++|+.+
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~ 35 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIG 35 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 367889999985 899999999999999998873
No 389
>PRK05875 short chain dehydrogenase; Provisional
Probab=77.46 E-value=3.9 Score=40.59 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=29.9
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
++++++.|.|. |.+|+++++.|.+.|++|+.++
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~ 38 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVG 38 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 67899999996 8999999999999999998854
No 390
>PRK09620 hypothetical protein; Provisional
Probab=77.35 E-value=3.9 Score=41.13 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=29.6
Q ss_pred CCCcEEEEEcc-----------------ccHHHHHHHHHHHCCCeEEEEec
Q psy1913 278 MENKTYIVQGF-----------------GNVGFHAARYFRRGRAKCLAIVE 311 (535)
Q Consensus 278 l~g~~VaIQGf-----------------GnVG~~~A~~L~e~GakVVaVsD 311 (535)
|+|++|.|.+- |-+|+++|+.|.++|++|+.|..
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 46888888855 89999999999999999998864
No 391
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=77.25 E-value=4.1 Score=47.57 Aligned_cols=39 Identities=23% Similarity=0.115 Sum_probs=33.1
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHH
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTY 332 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~ 332 (535)
++|+|.|.|..|..+|..++..|..|+- .|.+.+.|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l-------------~d~~~~~l~~~ 352 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVM-------------KDINQHSLDLG 352 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEE-------------EeCCHHHHHHH
Confidence 5899999999999999999999999988 55666666543
No 392
>PRK08264 short chain dehydrogenase; Validated
Probab=77.18 E-value=4 Score=39.44 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=28.8
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCC-eEEEEe
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRA-KCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~Ga-kVVaVs 310 (535)
+++++|.|.| .|.+|+++|+.|.++|+ +|+.++
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~ 38 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAA 38 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEe
Confidence 4678999998 59999999999999999 877754
No 393
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=77.15 E-value=3.9 Score=40.27 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=29.5
Q ss_pred CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913 277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV 309 (535)
+++|+++.|.|. |.+|.++|+.|.+.|++|+++
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~ 40 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGI 40 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEe
Confidence 478999999985 689999999999999999875
No 394
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=77.11 E-value=6.1 Score=39.02 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=28.6
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV 309 (535)
++++++.|.|. |.+|+++|+.|++.|++|+.+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~ 35 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVL 35 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 57899999985 789999999999999999874
No 395
>PRK07814 short chain dehydrogenase; Provisional
Probab=77.07 E-value=6.3 Score=39.02 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=29.0
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
++++++.|.|. |-+|.++++.|.++|++|+.++
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~ 41 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAA 41 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 67899999995 5799999999999999998743
No 396
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=77.00 E-value=18 Score=40.10 Aligned_cols=32 Identities=16% Similarity=0.363 Sum_probs=27.5
Q ss_pred cEEEEEccccHHHHHHHHHHHC---CCeEEEEecC
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRG---RAKCLAIVEH 312 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~---GakVVaVsD~ 312 (535)
.+|+|=|||-+|+.+.|.+.+. ...||+|-|.
T Consensus 76 ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~ 110 (442)
T PLN02237 76 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 110 (442)
T ss_pred EEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC
Confidence 6999999999999999987743 5899998764
No 397
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=76.87 E-value=6.6 Score=40.73 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=24.9
Q ss_pred CcEEEEEccccHHHHHHHHHHHCCCeE
Q psy1913 280 NKTYIVQGFGNVGFHAARYFRRGRAKC 306 (535)
Q Consensus 280 g~~VaIQGfGnVG~~~A~~L~e~GakV 306 (535)
-++|.|.|.|.+|+++|+.|.+.|..+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v 29 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVV 29 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeE
Confidence 368999999999999999999999876
No 398
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.84 E-value=3.9 Score=42.49 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=30.1
Q ss_pred CCCCCcEEEEEccc---cHHHHHHHHHHHCCCeEEE
Q psy1913 276 PCMENKTYIVQGFG---NVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 276 ~~l~g~~VaIQGfG---nVG~~~A~~L~e~GakVVa 308 (535)
.+++||++.|-|.| -+|+.+|+.|++.|++||.
T Consensus 4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv 39 (299)
T PRK06300 4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILV 39 (299)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEE
Confidence 35789999999997 8999999999999999986
No 399
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=76.84 E-value=13 Score=33.87 Aligned_cols=65 Identities=17% Similarity=0.071 Sum_probs=51.2
Q ss_pred CCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEc--------cccHHHHHHHHHHHCCCeEEEEecCCc
Q psy1913 243 GIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQG--------FGNVGFHAARYFRRGRAKCLAIVEHDT 314 (535)
Q Consensus 243 Gs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQG--------fGnVG~~~A~~L~e~GakVVaVsD~~G 314 (535)
|-.|+...|.|....+.+.+.+ .+..+| ++...|.|.| .|.-...+.+.|++.|.+|+-|-|..-
T Consensus 36 g~kg~kk~TpyAAq~aa~~~~~---~~~~~G----i~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~DvTp 108 (114)
T TIGR03628 36 VKADRDESSPYAAMQAAGRAAE---KAKERG----ITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTP 108 (114)
T ss_pred EeCCCccCCHHHHHHHHHHHHH---HHHHcC----CcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEEEcCC
Confidence 3346788899988877776653 334555 4689999999 678888999999999999999999653
No 400
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=76.79 E-value=4.3 Score=40.13 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=30.2
Q ss_pred CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
+++++++.|.|. +.+|+++|+.|.+.|++|+.++
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~ 39 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTY 39 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEc
Confidence 578999999995 8899999999999999988754
No 401
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=76.66 E-value=3.9 Score=37.99 Aligned_cols=30 Identities=30% Similarity=0.327 Sum_probs=27.0
Q ss_pred EEEEcc-ccHHHHHHHHHHHCCCeEEEEecC
Q psy1913 283 YIVQGF-GNVGFHAARYFRRGRAKCLAIVEH 312 (535)
Q Consensus 283 VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~ 312 (535)
|+|.|. |.+|+.+++.|.+.|++|++++-+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~ 31 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRS 31 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecC
Confidence 678895 999999999999999999998844
No 402
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=76.56 E-value=3.7 Score=42.74 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=29.1
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs 310 (535)
.|.+|+|+|.|.||..+++++...|++|+++.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~ 203 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLN 203 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEe
Confidence 68899999999999999999999999988744
No 403
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.38 E-value=4.6 Score=39.21 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=28.6
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
+.+++++|.|- |.+|+++++.|.+.|++|+.+.
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~ 35 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNY 35 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEc
Confidence 46789999995 8999999999999999988643
No 404
>PRK08263 short chain dehydrogenase; Provisional
Probab=76.32 E-value=4.7 Score=40.21 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=27.7
Q ss_pred CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
.+++|.|.| .|-+|+++|+.|.+.|++|+.++
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~ 34 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATA 34 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEE
Confidence 467899998 69999999999999999988743
No 405
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=76.28 E-value=3.8 Score=43.45 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=29.4
Q ss_pred CCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 279 ENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 279 ~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
++++|.|.|- |.||+++++.|.+.|..|++++
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~ 52 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASD 52 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEE
Confidence 4689999996 9999999999999999999975
No 406
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.26 E-value=4.5 Score=38.95 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=29.7
Q ss_pred CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
+++++++.|.| .|.+|+++|+.|.+.|++|+.+.
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~ 36 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVD 36 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 36789999998 58899999999999999988754
No 407
>PRK12937 short chain dehydrogenase; Provisional
Probab=76.25 E-value=4.8 Score=38.86 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=29.3
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
++++++.|.| .|.+|+++|+.|.++|++|+.+.
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~ 36 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNY 36 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEec
Confidence 5788999998 59999999999999999988754
No 408
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=76.24 E-value=9.3 Score=39.95 Aligned_cols=53 Identities=15% Similarity=0.205 Sum_probs=41.0
Q ss_pred CchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913 249 SATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 249 ~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV 309 (535)
.-|+|-.+-.+. +.++++|. +|+..+|+|.|. |.+|..+|+.|.-++.++.-+
T Consensus 144 s~Tayaa~r~Vl------~~~~~lGi--dlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll 197 (351)
T COG5322 144 SHTAYAACRQVL------KHFAQLGI--DLSQATVAIVGATGDIASAIARWLAPKVGVKELL 197 (351)
T ss_pred ccchHHHHHHHH------HHHHHhCc--CHHHCeEEEecCCchHHHHHHHHhccccCEEEEe
Confidence 456666555554 44567897 479999999996 999999999999888776653
No 409
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=76.18 E-value=6.7 Score=34.64 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=27.0
Q ss_pred EEEEEcc-ccHHHHHHHHHHH-CCCeEEEEecCC
Q psy1913 282 TYIVQGF-GNVGFHAARYFRR-GRAKCLAIVEHD 313 (535)
Q Consensus 282 ~VaIQGf-GnVG~~~A~~L~e-~GakVVaVsD~~ 313 (535)
+++|.|. |.+|..+++.|.+ .+..+++|++++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~ 34 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASA 34 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEech
Confidence 5889994 9999999999998 589999986543
No 410
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=76.15 E-value=4.7 Score=42.01 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=30.6
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEec
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVE 311 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD 311 (535)
.++++|.|.| .|-+|+++++.|.+.|++|+++.+
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLR 42 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 4789999999 599999999999999999998654
No 411
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.13 E-value=4.6 Score=40.67 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=29.4
Q ss_pred CCCCcEEEEEccc---cHHHHHHHHHHHCCCeEEEE
Q psy1913 277 CMENKTYIVQGFG---NVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 277 ~l~g~~VaIQGfG---nVG~~~A~~L~e~GakVVaV 309 (535)
.++|+++.|.|.+ .+|+.+|+.|++.|++|+.+
T Consensus 4 ~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~ 39 (271)
T PRK06505 4 LMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFT 39 (271)
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEe
Confidence 3688999999987 69999999999999998863
No 412
>PRK07411 hypothetical protein; Validated
Probab=76.07 E-value=3.1 Score=45.00 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=31.7
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD 313 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~ 313 (535)
|+..+|.|.|.|-+|..+|+.|...|..=+.+.|.+
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 356899999999999999999999998878777753
No 413
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.96 E-value=4.4 Score=40.03 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=29.4
Q ss_pred CCCCcEEEEEccc---cHHHHHHHHHHHCCCeEEEE
Q psy1913 277 CMENKTYIVQGFG---NVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 277 ~l~g~~VaIQGfG---nVG~~~A~~L~e~GakVVaV 309 (535)
.|+|+++.|.|.. .+|+++|+.|.+.|++|+.+
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~ 38 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFT 38 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEE
Confidence 3789999999974 79999999999999998875
No 414
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=75.96 E-value=28 Score=37.15 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=26.8
Q ss_pred cEEEEEccccHHHHHHHHHHHC-CCeEEEEec
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVE 311 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD 311 (535)
.+|+|.|||.+|+.+.+.+.+. ..+|++|-|
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~~~ivaind 34 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPELEFVQIND 34 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCcEEEEecC
Confidence 5899999999999999998764 589998765
No 415
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.85 E-value=4.3 Score=39.88 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=29.1
Q ss_pred CCCcEEEEEcc---ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQGF---GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQGf---GnVG~~~A~~L~e~GakVVaVs 310 (535)
+++++|.|.|. |.+|..+|+.|.+.|++|+.++
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~ 38 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTY 38 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEc
Confidence 67899999996 4799999999999999988764
No 416
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=75.75 E-value=3.5 Score=46.37 Aligned_cols=33 Identities=30% Similarity=0.240 Sum_probs=29.4
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEec
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE 311 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD 311 (535)
..|++|+|+|.|.+|..+|..|.+.|++|+. .|
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v-~e 167 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTI-FE 167 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEE-Ee
Confidence 3689999999999999999999999999665 44
No 417
>PRK08862 short chain dehydrogenase; Provisional
Probab=75.69 E-value=7.3 Score=38.26 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=28.7
Q ss_pred CCCCcEEEEEccc-cHHHHHHHHHHHCCCeEEEE
Q psy1913 277 CMENKTYIVQGFG-NVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 277 ~l~g~~VaIQGfG-nVG~~~A~~L~e~GakVVaV 309 (535)
+++|+++.|.|.+ .+|..+|+.|.+.|++|+.+
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~ 35 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLILC 35 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEE
Confidence 3678999999965 59999999999999998874
No 418
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=75.67 E-value=14 Score=34.37 Aligned_cols=65 Identities=18% Similarity=0.095 Sum_probs=51.0
Q ss_pred CCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEc--------cccHHHHHHHHHHHCCCeEEEEecCCc
Q psy1913 243 GIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQG--------FGNVGFHAARYFRRGRAKCLAIVEHDT 314 (535)
Q Consensus 243 Gs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQG--------fGnVG~~~A~~L~e~GakVVaVsD~~G 314 (535)
|-.|+...|-|....+.+.+.+ .+..+| ++...|.|-| .|.-...+.+.|+..|.+|+-|-|..-
T Consensus 43 g~kg~kK~TpyAAq~aae~~~~---~~~~~G----i~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~DvTp 115 (132)
T PRK09607 43 VKADRDESSPYAAMQAAEKAAE---DAKEKG----ITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTP 115 (132)
T ss_pred eeCCCccCCHHHHHHHHHHHHH---HHHHcC----CcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEEcCC
Confidence 3346778899988877776653 334555 4789999999 778888899999999999999999653
No 419
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=75.65 E-value=4.9 Score=38.50 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=28.9
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
+.+++|+|.| .|.+|.++++.|.++|++|+.++
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~ 36 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYD 36 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 4678999999 59999999999999999987754
No 420
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=75.58 E-value=3.9 Score=41.52 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=29.0
Q ss_pred CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
++++|.|.| .|-+|+++++.|.+.|.+|+++.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~ 35 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATV 35 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEE
Confidence 478999999 69999999999999999998865
No 421
>PRK09242 tropinone reductase; Provisional
Probab=75.54 E-value=7.1 Score=38.28 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=29.9
Q ss_pred CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
.++|+++.|.| .|.+|..+++.|.+.|++|+.++
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~ 40 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVA 40 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Confidence 36789999998 48999999999999999988754
No 422
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=75.53 E-value=4.8 Score=41.96 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=30.4
Q ss_pred CCCCCCcEEEEEcc---ccHHHHHHHHHHHCCCeEEE
Q psy1913 275 EPCMENKTYIVQGF---GNVGFHAARYFRRGRAKCLA 308 (535)
Q Consensus 275 ~~~l~g~~VaIQGf---GnVG~~~A~~L~e~GakVVa 308 (535)
.-+|+||++.|-|. .-.|..+|+.|++.|++||.
T Consensus 4 ~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~ 40 (303)
T PLN02730 4 PIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV 40 (303)
T ss_pred CcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE
Confidence 33589999999999 66999999999999999987
No 423
>PLN02572 UDP-sulfoquinovose synthase
Probab=75.34 E-value=4.4 Score=44.28 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=33.0
Q ss_pred CCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 273 GLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 273 g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
|.+..+++++|.|.|. |-+|+++++.|.+.|++|+++.
T Consensus 40 ~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 40 GSSSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred CCCccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 4455678999999994 9999999999999999998864
No 424
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=75.34 E-value=6.6 Score=40.92 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=24.8
Q ss_pred cEEEEEccccHHHHHHHHHHHCCC-eEEEEec
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRA-KCLAIVE 311 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaVsD 311 (535)
++|+|.|.|.||..+|..|...|. .-|.+.|
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D 32 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVD 32 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEE
Confidence 379999999999999999999993 3344444
No 425
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=75.32 E-value=8 Score=37.43 Aligned_cols=32 Identities=34% Similarity=0.456 Sum_probs=28.5
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV 309 (535)
|+++++.|.| .|.+|+++++.|.+.|++|+.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~ 33 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVF 33 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEe
Confidence 4688999999 5899999999999999998874
No 426
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=75.19 E-value=6.1 Score=43.81 Aligned_cols=186 Identities=12% Similarity=0.069 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-c-cceEEeecccc
Q psy1913 291 VGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-D-KVDILVPAAIE 366 (535)
Q Consensus 291 VG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-~-~~DILiPaA~~ 366 (535)
.|+.+|+-|+++|.+|++ .|.+.+...+..+..|.- .++...+. ++.. + .||+++-|-..
T Consensus 1 MG~~mA~nL~~~G~~V~v-------------~nrt~~~~~~l~~~~g~~---~g~~~~~s~~e~v~~l~~~~~Ii~mv~~ 64 (459)
T PRK09287 1 MGKNLALNIASHGYTVAV-------------YNRTPEKTDEFLAEEGKG---KKIVPAYTLEEFVASLEKPRKILLMVKA 64 (459)
T ss_pred CcHHHHHHHHhCCCeEEE-------------ECCCHHHHHHHHHhhCCC---CCeEeeCCHHHHHhhCCCCCEEEEECCC
Confidence 488999999999999987 556677777766542210 12222222 4432 2 58988887554
Q ss_pred ccccccc----ccccc-ceEEEecCCCC--CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhcccccccccccccc
Q psy1913 367 KVIRKSN----ADKVQ-AKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGY 439 (535)
Q Consensus 367 ~~It~~n----a~~i~-AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~ 439 (535)
+....+- ++.+. -.+|+++.|.- .|.+..+.|.++||.|+= .--+||..- .+.=+ .+-.| .
T Consensus 65 g~~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvd--apVSGG~~g--A~~G~---siM~G----G- 132 (459)
T PRK09287 65 GAPVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIG--MGVSGGEEG--ALHGP---SIMPG----G- 132 (459)
T ss_pred chHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEe--cCCCCCHHH--HhcCC---EEEEe----C-
Confidence 4333332 22332 47999999864 456666789999999872 233444421 01000 11111 1
Q ss_pred ch---hhHHHHHHhhhhhhhhhhhhh-hhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCHHH
Q psy1913 440 DK---EISDLLLSSIDTSLSDTFNKK-IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEK-SDNKLDLRN 514 (535)
Q Consensus 440 ~~---~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~-~~~~~~lR~ 514 (535)
++ ++.+.+++.|..... -|.. ....-+.-...++ ..|+..++..|..++-+.+.++++ .+ +|..+
T Consensus 133 ~~~a~~~~~piL~~ia~~~~--~g~~c~~~vG~~GaGh~v------KmvhN~ie~~~mq~iaEa~~l~~~~~G--l~~~~ 202 (459)
T PRK09287 133 QKEAYELVAPILEKIAAKVE--DGEPCVTYIGPDGAGHYV------KMVHNGIEYGDMQLIAEAYDLLKDGLG--LSAEE 202 (459)
T ss_pred CHHHHHHHHHHHHHHhhhhc--CCCCceeeeCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcC--CCHHH
Confidence 22 222233333322110 0000 0000111222333 379999999999999999999995 54 66544
No 427
>PLN00198 anthocyanidin reductase; Provisional
Probab=75.11 E-value=4.5 Score=41.75 Aligned_cols=33 Identities=18% Similarity=0.068 Sum_probs=29.9
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
.++++|.|.| .|-+|+++++.|.+.|++|+++.
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~ 40 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTV 40 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEE
Confidence 6789999999 79999999999999999998754
No 428
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=74.99 E-value=4.8 Score=36.58 Aligned_cols=94 Identities=17% Similarity=0.218 Sum_probs=54.6
Q ss_pred EEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcC-CcccCCCCcccCC-----C--Ccc
Q psy1913 283 YIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKG-TIKGYPGTKSAPT-----D--IMF 354 (535)
Q Consensus 283 VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g-~v~~~~~a~~i~~-----e--ll~ 354 (535)
|+|.|.|.+|..+|..|++.|..|..++-+ ..+.. .++.| .+....+...+.. . .-.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~--------------~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS--------------PRLEA-IKEQGLTITGPDGDETVQPPIVISAPSADA 65 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH--------------HHHHH-HHHHCEEEEETTEEEEEEEEEEESSHGHHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc--------------ccHHh-hhheeEEEEecccceecccccccCcchhcc
Confidence 689999999999999999999998885421 22333 33333 3333222222221 1 134
Q ss_pred ccceEEeeccccccccccccccc----cc-eEEEecCCCCCCH
Q psy1913 355 DKVDILVPAAIEKVIRKSNADKV----QA-KIIVEAANGPLTP 392 (535)
Q Consensus 355 ~~~DILiPaA~~~~It~~na~~i----~A-kiIvEgAN~p~T~ 392 (535)
.++|+++-|.-...+.. -.+.+ .. ..|+=.-||--..
T Consensus 66 ~~~D~viv~vKa~~~~~-~l~~l~~~~~~~t~iv~~qNG~g~~ 107 (151)
T PF02558_consen 66 GPYDLVIVAVKAYQLEQ-ALQSLKPYLDPNTTIVSLQNGMGNE 107 (151)
T ss_dssp STESEEEE-SSGGGHHH-HHHHHCTGEETTEEEEEESSSSSHH
T ss_pred CCCcEEEEEecccchHH-HHHHHhhccCCCcEEEEEeCCCCcH
Confidence 68999999976544432 22222 22 3677777775433
No 429
>PRK06398 aldose dehydrogenase; Validated
Probab=74.97 E-value=5.1 Score=39.69 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=30.1
Q ss_pred CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
+++|+++.|.|. |-+|.++|+.|.+.|++|+.++
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~ 37 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFD 37 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEe
Confidence 478999999994 7899999999999999998764
No 430
>KOG1196|consensus
Probab=74.96 E-value=13 Score=39.40 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=63.1
Q ss_pred CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCccc--CCCCcccCC---CC
Q psy1913 279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKG--YPGTKSAPT---DI 352 (535)
Q Consensus 279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~--~~~a~~i~~---el 352 (535)
+|.||.|.| .|.||+-+-++-.-.|++||+++-++ +++.-.+.+.|.-.. |.....++. ..
T Consensus 153 ~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~-------------EKv~ll~~~~G~d~afNYK~e~~~~~aL~r~ 219 (343)
T KOG1196|consen 153 KGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSK-------------EKVDLLKTKFGFDDAFNYKEESDLSAALKRC 219 (343)
T ss_pred CCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCCh-------------hhhhhhHhccCCccceeccCccCHHHHHHHh
Confidence 789999999 69999999888888999999988653 222223334443222 211111221 34
Q ss_pred ccccceEEeeccccccccccc-cccccceEEEecCCCC
Q psy1913 353 MFDKVDILVPAAIEKVIRKSN-ADKVQAKIIVEAANGP 389 (535)
Q Consensus 353 l~~~~DILiPaA~~~~It~~n-a~~i~AkiIvEgAN~p 389 (535)
+....||++.--.++.++.-- .-+.+.||++.|+=.+
T Consensus 220 ~P~GIDiYfeNVGG~~lDavl~nM~~~gri~~CG~ISq 257 (343)
T KOG1196|consen 220 FPEGIDIYFENVGGKMLDAVLLNMNLHGRIAVCGMISQ 257 (343)
T ss_pred CCCcceEEEeccCcHHHHHHHHhhhhccceEeeeeehh
Confidence 567789999888777665421 1233688999887553
No 431
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.88 E-value=4.9 Score=40.01 Aligned_cols=32 Identities=31% Similarity=0.501 Sum_probs=28.8
Q ss_pred CCCcEEEEEcc---ccHHHHHHHHHHHCCCeEEEE
Q psy1913 278 MENKTYIVQGF---GNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 278 l~g~~VaIQGf---GnVG~~~A~~L~e~GakVVaV 309 (535)
++|++++|.|. +.+|..+|+.|++.|++|+.+
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~ 39 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFT 39 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEe
Confidence 67899999997 489999999999999998764
No 432
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=74.83 E-value=5.2 Score=39.36 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=29.9
Q ss_pred CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
.+++++|.|.|. |.+|..+|+.|.+.|++|+.++
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~ 46 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITT 46 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 368999999995 8899999999999999988753
No 433
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=74.82 E-value=3.6 Score=35.35 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=27.4
Q ss_pred CcEEEEEccccHHHHHHHHH-HHCCCeEEEEecCC
Q psy1913 280 NKTYIVQGFGNVGFHAARYF-RRGRAKCLAIVEHD 313 (535)
Q Consensus 280 g~~VaIQGfGnVG~~~A~~L-~e~GakVVaVsD~~ 313 (535)
..+|+|+|.|+.|+.++..+ ...|.+++++.|.+
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~ 37 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVD 37 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEEC
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcC
Confidence 46899999999999887433 45799999998854
No 434
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=74.81 E-value=3.6 Score=49.61 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=30.3
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs 310 (535)
..|++|+|+|.|+.|..+|..|.+.|++|+.+-
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E 413 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAID 413 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEc
Confidence 478999999999999999999999999998754
No 435
>PRK07577 short chain dehydrogenase; Provisional
Probab=74.81 E-value=5.4 Score=38.30 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=28.8
Q ss_pred CCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEec
Q psy1913 279 ENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVE 311 (535)
Q Consensus 279 ~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD 311 (535)
.++++.|.|. |.+|+++++.|.++|++|+.++-
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r 35 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIAR 35 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 4688999985 89999999999999999988753
No 436
>PRK09135 pteridine reductase; Provisional
Probab=74.73 E-value=5 Score=38.68 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=29.2
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
..+++|.|.| .|.+|+++++.|.++|++|++++
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~ 37 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHY 37 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEc
Confidence 3578999999 59999999999999999998865
No 437
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=74.67 E-value=29 Score=36.04 Aligned_cols=32 Identities=9% Similarity=-0.016 Sum_probs=24.3
Q ss_pred CCcEEEEEc----cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 279 ENKTYIVQG----FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 279 ~g~~VaIQG----fGnVG~~~A~~L~e~GakVVaVs 310 (535)
+|.+|.|+= -|.-=..+.+++.+.|++|++|+
T Consensus 193 ~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~ 228 (268)
T TIGR01743 193 TGSKVLIIDDFMKAGGTINGMINLLDEFDAEVAGIG 228 (268)
T ss_pred CcCEEEEEeeecccCHHHHHHHHHHHHCCCEEEEEE
Confidence 578887753 46566677888889999999876
No 438
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=74.67 E-value=3.3 Score=42.88 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=28.6
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs 310 (535)
..++|+|.|.|.+|..+|..|++.|..|+.++
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~ 35 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLL 35 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence 45789999999999999999999999888765
No 439
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=74.63 E-value=9.7 Score=40.48 Aligned_cols=95 Identities=13% Similarity=0.148 Sum_probs=53.6
Q ss_pred cEEEEEcc-ccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCC--cccCC-CCccc
Q psy1913 281 KTYIVQGF-GNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGT--KSAPT-DIMFD 355 (535)
Q Consensus 281 ~~VaIQGf-GnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a--~~i~~-ell~~ 355 (535)
++|+|.|. |-||+.+++.|.+. +.+++++.+++. ..| -.+... .+.+.+.... +..+. ++..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~----sag--k~~~~~------~~~l~~~~~~~~~~~~~~~~~~- 67 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE----SAG--KPVSEV------HPHLRGLVDLNLEPIDEEEIAE- 67 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch----hcC--CChHHh------CccccccCCceeecCCHHHhhc-
Confidence 47999998 99999999999986 789998765531 133 111111 1111111000 11122 3333
Q ss_pred cceEEeeccccccccccccccc-cc-eEEEecCCCC
Q psy1913 356 KVDILVPAAIEKVIRKSNADKV-QA-KIIVEAANGP 389 (535)
Q Consensus 356 ~~DILiPaA~~~~It~~na~~i-~A-kiIvEgAN~p 389 (535)
+||+++-|+. +..+.+-+..+ .+ +.|+.-++..
T Consensus 68 ~~DvVf~alP-~~~s~~~~~~~~~~G~~VIDlS~~f 102 (346)
T TIGR01850 68 DADVVFLALP-HGVSAELAPELLAAGVKVIDLSADF 102 (346)
T ss_pred CCCEEEECCC-chHHHHHHHHHHhCCCEEEeCChhh
Confidence 8999998874 44666666655 22 3455544443
No 440
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=74.63 E-value=5.1 Score=35.71 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=27.7
Q ss_pred EEEEEc-cccHHHHHHHHHHHC-CCeEEEEecCC
Q psy1913 282 TYIVQG-FGNVGFHAARYFRRG-RAKCLAIVEHD 313 (535)
Q Consensus 282 ~VaIQG-fGnVG~~~A~~L~e~-GakVVaVsD~~ 313 (535)
||+|.| .|.||+.++++|.++ .+.++.+..++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~ 34 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSS 34 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEEST
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeec
Confidence 689999 999999999999884 67888877765
No 441
>PRK08589 short chain dehydrogenase; Validated
Probab=74.54 E-value=7.1 Score=39.00 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=29.3
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV 309 (535)
++++++.|.|. |.+|+.+|+.|.+.|++|+.+
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~ 36 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAV 36 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 67899999996 889999999999999999985
No 442
>PLN02214 cinnamoyl-CoA reductase
Probab=74.40 E-value=4.8 Score=42.06 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=30.0
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
+++++|.|.|. |-+|+++++.|.++|++|++++
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~ 41 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTV 41 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence 46789999997 9999999999999999999865
No 443
>PRK08017 oxidoreductase; Provisional
Probab=74.19 E-value=4.9 Score=39.16 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=27.2
Q ss_pred cEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 281 KTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 281 ~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
++|.|.|. |.+|+++++.|.++|++|++++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~ 33 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAAC 33 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 58999998 9999999999999999998854
No 444
>PRK05854 short chain dehydrogenase; Provisional
Probab=74.13 E-value=7.6 Score=40.00 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 276 PCMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 276 ~~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
++++|++++|.| .+.+|.++|+.|.+.|++|+.++
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~ 45 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPV 45 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 368899999999 47899999999999999998754
No 445
>PRK10537 voltage-gated potassium channel; Provisional
Probab=74.10 E-value=4.6 Score=43.85 Aligned_cols=101 Identities=11% Similarity=0.150 Sum_probs=59.4
Q ss_pred CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcC-CcccCCCCcccCCCCc----c
Q psy1913 280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKG-TIKGYPGTKSAPTDIM----F 354 (535)
Q Consensus 280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g-~v~~~~~a~~i~~ell----~ 354 (535)
..+|+|.|+|.+|+.+++.|.+.|..++.|.+. ...+...+.- -+.+ ...+.+.| -
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d---------------~~~~~~~~g~~vI~G----D~td~e~L~~AgI 300 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPL---------------GLEHRLPDDADLIPG----DSSDSAVLKKAGA 300 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECc---------------hhhhhccCCCcEEEe----CCCCHHHHHhcCc
Confidence 458999999999999999999999888875421 1111111110 0111 11111222 2
Q ss_pred ccceEEeecccccccc---ccccccc--cceEEEecCCCCCCHHHHHHHHhCCc
Q psy1913 355 DKVDILVPAAIEKVIR---KSNADKV--QAKIIVEAANGPLTPAAHAMLLKKNV 403 (535)
Q Consensus 355 ~~~DILiPaA~~~~It---~~na~~i--~AkiIvEgAN~p~T~eA~~iL~~rGI 403 (535)
.+|+.++-+.-.+..| ...+.++ .+|+|+..-| ++..+.|++-|+
T Consensus 301 ~~A~aVI~~t~dD~~Nl~ivL~ar~l~p~~kIIa~v~~----~~~~~~L~~~Ga 350 (393)
T PRK10537 301 ARARAILALRDNDADNAFVVLAAKEMSSDVKTVAAVND----SKNLEKIKRVHP 350 (393)
T ss_pred ccCCEEEEcCCChHHHHHHHHHHHHhCCCCcEEEEECC----HHHHHHHHhcCC
Confidence 4788888766543222 2334444 3688887664 566677888775
No 446
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=73.92 E-value=7.9 Score=38.53 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=29.3
Q ss_pred CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913 277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV 309 (535)
+++++++.|.|. |.+|+++|+.|.+.|++|+.+
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~ 40 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAIL 40 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 468899999995 899999999999999998774
No 447
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=73.68 E-value=8.5 Score=38.09 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=28.8
Q ss_pred CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913 277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV 309 (535)
+++++++.|.| .|.+|.++|+.|++.|++|+.+
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~ 40 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFN 40 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEE
Confidence 36789999988 5899999999999999998864
No 448
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=73.55 E-value=8.9 Score=37.65 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=29.4
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
++++++.|.| -|.+|+++|+.|.++|++|+.+.
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~ 43 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGARVVLSA 43 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEe
Confidence 6789999998 59999999999999999987743
No 449
>PRK07478 short chain dehydrogenase; Provisional
Probab=73.55 E-value=8.9 Score=37.52 Aligned_cols=33 Identities=30% Similarity=0.434 Sum_probs=29.1
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
++++++.|.|. |.+|.++|+.|.+.|++|+.++
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~ 37 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGA 37 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 57899999995 8899999999999999988743
No 450
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=73.52 E-value=5.8 Score=38.91 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=29.3
Q ss_pred CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913 277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV 309 (535)
.++++++.|.|. |.+|+++|+.|.+.|++|+.+
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~ 38 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLV 38 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 367899999985 889999999999999998874
No 451
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=73.51 E-value=6.3 Score=38.82 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=30.0
Q ss_pred CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
+++++++.|.| -|.+|.++|+.|.++|++||.++
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~ 38 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINY 38 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 47899999998 58899999999999999988754
No 452
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=73.48 E-value=5.5 Score=40.71 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=29.9
Q ss_pred CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEec
Q psy1913 279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVE 311 (535)
Q Consensus 279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD 311 (535)
+|++|.|.| .|-+|+++++.|.+.|++|+++.+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r 37 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVR 37 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 578999999 699999999999999999988664
No 453
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=73.41 E-value=5.4 Score=39.41 Aligned_cols=33 Identities=24% Similarity=0.193 Sum_probs=29.7
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
..+++|.|.| .|.+|+.+++.|.+.|++|++++
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~ 48 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGV 48 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEe
Confidence 4678999999 59999999999999999998865
No 454
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.39 E-value=5 Score=43.55 Aligned_cols=34 Identities=29% Similarity=0.577 Sum_probs=30.1
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH 312 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~ 312 (535)
+.+++|.|.|.|..|..+|++|.+.|++|++ +|.
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~-~d~ 36 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAA-YDA 36 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEE-EeC
Confidence 4688999999999999999999999999876 453
No 455
>PRK06139 short chain dehydrogenase; Provisional
Probab=73.38 E-value=7.1 Score=40.91 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=29.6
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
+++++|.|.|. |.+|+.+|+.|.+.|++|+.++
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~ 38 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAA 38 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEE
Confidence 67899999996 8999999999999999998743
No 456
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.36 E-value=6.4 Score=38.64 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=29.4
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
++++++.|.| .|.+|+.+|+.|.+.|++|+.+.
T Consensus 5 l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~ 38 (255)
T PRK06463 5 FKGKVALITGGTRGIGRAIAEAFLREGAKVAVLY 38 (255)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 5789999998 59999999999999999988754
No 457
>KOG1207|consensus
Probab=73.33 E-value=9.7 Score=37.61 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=31.0
Q ss_pred CCCCcEEEEEccc-cHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQGFG-NVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQGfG-nVG~~~A~~L~e~GakVVaVs 310 (535)
+|.|+.|.+.|.| .+|+.+++.|+..|++||||+
T Consensus 4 ~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAva 38 (245)
T KOG1207|consen 4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVA 38 (245)
T ss_pred cccceEEEeecccccccHHHHHHHHhcCCEEEEEe
Confidence 5789999999976 589999999999999999988
No 458
>PRK12746 short chain dehydrogenase; Provisional
Probab=73.26 E-value=6.3 Score=38.43 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=28.7
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV 309 (535)
++++++.|.| .|-+|.++|+.|.++|++|+.+
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~ 36 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIH 36 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 6789999999 6899999999999999998764
No 459
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=73.22 E-value=6.1 Score=39.00 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=29.9
Q ss_pred CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
++++++++|.| .|.+|.++|+.|.+.|++|+.+.
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~ 40 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNAD 40 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 36789999999 58999999999999999998754
No 460
>PRK06914 short chain dehydrogenase; Provisional
Probab=73.17 E-value=5.9 Score=39.41 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=28.4
Q ss_pred CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
+++++.|.| .|-+|+++++.|.++|++|++++
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~ 34 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATM 34 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEe
Confidence 567888988 58999999999999999999864
No 461
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=73.10 E-value=5.8 Score=42.55 Aligned_cols=140 Identities=24% Similarity=0.268 Sum_probs=77.7
Q ss_pred cCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCC-eEEEEecCCceE
Q psy1913 238 PLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRA-KCLAIVEHDTAI 316 (535)
Q Consensus 238 P~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaVsD~~G~i 316 (535)
|++.=+..|=.--||+|.+. . ..... .|.+|+|.|.|-||.++..-+...|+ +|||
T Consensus 159 p~~~a~llGCgV~TG~Gav~--n----------ta~v~---~G~tvaV~GlGgVGlaaI~gA~~agA~~IiA-------- 215 (366)
T COG1062 159 PLEKACLLGCGVTTGIGAVV--N----------TAKVE---PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIA-------- 215 (366)
T ss_pred CccceEEEeeeeccChHHhh--h----------cccCC---CCCeEEEEeccHhHHHHHHHHHHcCCceEEE--------
Confidence 44444444555668888432 2 11223 58999999999999999999888897 7888
Q ss_pred eCCCCCCCCHHHHHHHHHHcCCcccCCCCcc-cCCCCccccceEEeeccccccccccccccccceEEEecCCCC-CCHHH
Q psy1913 317 VPDKGTEINYKDLHTYKITKGTIKGYPGTKS-APTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGP-LTPAA 394 (535)
Q Consensus 317 ynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~-i~~ell~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p-~T~eA 394 (535)
=|++.+++.. .++.| ++. +.+ .+.|=++.+ + ..+|.. -+.+..|..+++ +-..|
T Consensus 216 -----vD~~~~Kl~~-A~~fG-------AT~~vn~----~~~~~vv~~-i-~~~T~g-----G~d~~~e~~G~~~~~~~a 271 (366)
T COG1062 216 -----VDINPEKLEL-AKKFG-------ATHFVNP----KEVDDVVEA-I-VELTDG-----GADYAFECVGNVEVMRQA 271 (366)
T ss_pred -----EeCCHHHHHH-HHhcC-------Cceeecc----hhhhhHHHH-H-HHhcCC-----CCCEEEEccCCHHHHHHH
Confidence 4577777654 44454 321 111 011100000 0 011111 344556666665 33456
Q ss_pred HHHHHhCCceeeccccccccCcc-hhhHhhhh
Q psy1913 395 HAMLLKKNVLIIPDIFANAGGVT-VSYFEWLK 425 (535)
Q Consensus 395 ~~iL~~rGI~viPD~laNaGGVi-vSy~Ew~q 425 (535)
-+.++.-|..++=. ++++|--| ...|..+.
T Consensus 272 l~~~~~~G~~v~iG-v~~~~~~i~~~~~~lv~ 302 (366)
T COG1062 272 LEATHRGGTSVIIG-VAGAGQEISTRPFQLVT 302 (366)
T ss_pred HHHHhcCCeEEEEe-cCCCCceeecChHHeec
Confidence 66777777655433 56676666 44555543
No 462
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.03 E-value=6.9 Score=37.96 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=28.9
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEec
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVE 311 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD 311 (535)
+++++|.|.| .|.+|+++++.|+++|++|+.+..
T Consensus 4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~ 38 (252)
T PRK06077 4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAK 38 (252)
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 5678999998 577999999999999999876543
No 463
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=73.01 E-value=4.3 Score=41.38 Aligned_cols=50 Identities=12% Similarity=0.134 Sum_probs=34.4
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCc---eEeCCCCCCCCHHHHH
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDT---AIVPDKGTEINYKDLH 330 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G---~iynp~G~dLDi~~L~ 330 (535)
+..+|+|.|.|-+|.++++.|++.|.-+.++.-..| .|+|+|= ++...|-
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~--Ve~sNLn 62 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT--VSEANVG 62 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE--Eccchhh
Confidence 468999999999999999999998744433331112 4566665 5555443
No 464
>PRK08618 ornithine cyclodeaminase; Validated
Probab=72.95 E-value=31 Score=36.17 Aligned_cols=112 Identities=11% Similarity=0.138 Sum_probs=66.2
Q ss_pred CCcEEEEEccccHHHHHHHHHH-HCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCC-CCcccCC--CCcc
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFR-RGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYP-GTKSAPT--DIMF 354 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~-e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~-~a~~i~~--ell~ 354 (535)
..++++|.|.|..|++.+..+. ..+.+-|.|.+. +.+...++.++... .|+ ....+++ +.+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r------------~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~- 190 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR------------TFEKAYAFAQEIQS--KFNTEIYVVNSADEAI- 190 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECC------------CHHHHHHHHHHHHH--hcCCcEEEeCCHHHHH-
Confidence 4679999999999998887775 468888877653 34444444332110 011 1112333 233
Q ss_pred ccceEEeeccccc--cccccccccc--cceEEEecCCCCCCHHHHHHHHhCCceeeccc
Q psy1913 355 DKVDILVPAAIEK--VIRKSNADKV--QAKIIVEAANGPLTPAAHAMLLKKNVLIIPDI 409 (535)
Q Consensus 355 ~~~DILiPaA~~~--~It~~na~~i--~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~ 409 (535)
.++||+|-|+... .++ ..+ .+.+++=|++.|--.|.+.-+.++.-.++-|.
T Consensus 191 ~~aDiVi~aT~s~~p~i~----~~l~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvvD~ 245 (325)
T PRK08618 191 EEADIIVTVTNAKTPVFS----EKLKKGVHINAVGSFMPDMQELPSEAIARANKVVVES 245 (325)
T ss_pred hcCCEEEEccCCCCcchH----HhcCCCcEEEecCCCCcccccCCHHHHhhCCEEEECC
Confidence 5899999887633 232 333 46788899999965555544444443333344
No 465
>PRK08226 short chain dehydrogenase; Provisional
Probab=72.85 E-value=5.9 Score=38.95 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=29.4
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
++++++.|.| .|.+|+++|+.|.+.|++|+.++
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~ 37 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLD 37 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEec
Confidence 5789999998 68999999999999999988753
No 466
>PLN02602 lactate dehydrogenase
Probab=72.84 E-value=5.2 Score=42.78 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.9
Q ss_pred cEEEEEccccHHHHHHHHHHHCCC
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRA 304 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~Ga 304 (535)
++|+|.|.|+||+.+|..|...+.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l 61 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDL 61 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC
Confidence 699999999999999999987764
No 467
>PRK05993 short chain dehydrogenase; Provisional
Probab=72.76 E-value=7.1 Score=39.10 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=28.0
Q ss_pred CcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 280 NKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 280 g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
+++|.|.|. |.+|+++|+.|++.|++|++++
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~ 35 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATC 35 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 678999997 9999999999999999998854
No 468
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=72.29 E-value=5.1 Score=37.73 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=28.4
Q ss_pred CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913 277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs 310 (535)
+++|++|+|+|.|+-+..+|..|++.|.+|.-+.
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~ 197 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVT 197 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEE
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEe
Confidence 5789999999999999999999999998777654
No 469
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.24 E-value=6.6 Score=38.96 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=29.1
Q ss_pred CCCCcEEEEEccc---cHHHHHHHHHHHCCCeEEEE
Q psy1913 277 CMENKTYIVQGFG---NVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 277 ~l~g~~VaIQGfG---nVG~~~A~~L~e~GakVVaV 309 (535)
+++|++++|.|.+ .+|..+|+.|++.|++|+.+
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~ 42 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVT 42 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEE
Confidence 4789999999975 69999999999999998763
No 470
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=72.22 E-value=6.7 Score=41.17 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.6
Q ss_pred cEEEEEccccHHHHHHHHHHHCCC
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRA 304 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~Ga 304 (535)
.+|+|.|.|+||+.+|..|...|.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~ 27 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGL 27 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC
Confidence 589999999999999999988764
No 471
>PRK10206 putative oxidoreductase; Provisional
Probab=72.12 E-value=6.5 Score=41.51 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=23.0
Q ss_pred cEEEEEccccHHH-HHHHHH-HH-CCCeEEEEecC
Q psy1913 281 KTYIVQGFGNVGF-HAARYF-RR-GRAKCLAIVEH 312 (535)
Q Consensus 281 ~~VaIQGfGnVG~-~~A~~L-~e-~GakVVaVsD~ 312 (535)
.+|+|+|+|..+. .-+..+ .. .++.|+||+|.
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~ 36 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRR 36 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcC
Confidence 4799999999765 223444 33 47999999875
No 472
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=71.96 E-value=5.2 Score=40.34 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=25.4
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD 313 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~ 313 (535)
..|+|+|.|.+|..+|..|++.|.+|+ |.|.+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~-i~E~~ 33 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVT-IIERR 33 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEE-EEESS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccc-cchhc
Confidence 369999999999999999999999955 55643
No 473
>KOG2336|consensus
Probab=71.93 E-value=4.7 Score=42.16 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=30.1
Q ss_pred HHhCCCCC---CCCcEEEEEccccHHHHHHHHHHHCCC-eEEE
Q psy1913 270 CEIGLEPC---MENKTYIVQGFGNVGFHAARYFRRGRA-KCLA 308 (535)
Q Consensus 270 ~~~g~~~~---l~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVa 308 (535)
+++|+-.+ +..+.|||+|.|.||+-+|+.|.+.|. |++-
T Consensus 69 qRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlL 111 (422)
T KOG2336|consen 69 QRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLL 111 (422)
T ss_pred HHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEE
Confidence 35565322 456899999999999999999999985 5543
No 474
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=71.89 E-value=9.2 Score=37.71 Aligned_cols=32 Identities=13% Similarity=0.245 Sum_probs=28.6
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV 309 (535)
++++++.|.|. |.+|+++|+.|.+.|++|+.+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~ 36 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVL 36 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 57899999985 789999999999999998874
No 475
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.70 E-value=6.6 Score=37.78 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=28.8
Q ss_pred CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913 278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV 309 (535)
+.++++.|.|. |.+|..+++.|++.|++|+.+
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~ 35 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIA 35 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 56789999985 999999999999999999885
No 476
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=71.58 E-value=5 Score=46.05 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=28.5
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCCCeEEEE
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaV 309 (535)
.|++|+|+|.|..|..+|..|.+.|++|+.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~ 356 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVY 356 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 5899999999999999999999999997654
No 477
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=71.41 E-value=6.6 Score=39.07 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=28.4
Q ss_pred CCCcEEEEEcc---ccHHHHHHHHHHHCCCeEEEE
Q psy1913 278 MENKTYIVQGF---GNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 278 l~g~~VaIQGf---GnVG~~~A~~L~e~GakVVaV 309 (535)
++|+++.|.|. +.+|..+|+.|.+.|++|+.+
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~ 38 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAELGIT 38 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEE
Confidence 67899999997 479999999999999998753
No 478
>PRK12827 short chain dehydrogenase; Provisional
Probab=71.17 E-value=7.1 Score=37.63 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=29.4
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
++++++.|.| .|.+|+++|+.|.++|++|+.+.
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLD 37 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEc
Confidence 5788999998 59999999999999999988765
No 479
>PLN02253 xanthoxin dehydrogenase
Probab=71.16 E-value=10 Score=37.82 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=29.4
Q ss_pred CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913 277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV 309 (535)
.++++++.|.| .|.+|+++|+.|.+.|++|+.+
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~ 48 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIV 48 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 46789999998 4899999999999999999874
No 480
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=71.16 E-value=11 Score=43.16 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=28.4
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCCCeEEEE
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaV 309 (535)
.+++|+|+|.|..|..+|..|.+.|++|+.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~ 339 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVF 339 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEE
Confidence 5899999999999999999999999997654
No 481
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=70.90 E-value=6.7 Score=38.72 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=29.0
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV 309 (535)
++|+++.|.| .+.+|+.+|+.|.+.|++|+.+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~ 38 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGV 38 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 6789999998 5899999999999999999874
No 482
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=70.88 E-value=6.8 Score=41.20 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=29.2
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs 310 (535)
.|.+|+|.|.|.||..+++++...|++|+++.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~ 214 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIS 214 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 58899999999999999999999999988754
No 483
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=70.85 E-value=5.5 Score=38.11 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=27.7
Q ss_pred EEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913 282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD 313 (535)
Q Consensus 282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~ 313 (535)
+|.|.|.|.+|..+++.|.+.|..=+.+.|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999998766666654
No 484
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=70.77 E-value=5.4 Score=41.38 Aligned_cols=103 Identities=16% Similarity=0.141 Sum_probs=57.7
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC-cccCCCCcc--c---CCCCcc
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT-IKGYPGTKS--A---PTDIMF 354 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~-v~~~~~a~~--i---~~ell~ 354 (535)
++|+|.|.|.||..+|-+|.+.|..|+.|.-+ .+.+..+.++.|- +........ + +.+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~-------------~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~- 68 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD-------------RQRLAAYQQAGGLTLVEQGQASLYAIPAETADAA- 68 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec-------------hHHHHHHhhcCCeEEeeCCcceeeccCCCCcccc-
Confidence 58999999999999999999999988775532 1233333333221 111100000 1 11222
Q ss_pred ccceEEeecccccccccccccccc-----ceEEEecCCCCCCHH-HHHHH
Q psy1913 355 DKVDILVPAAIEKVIRKSNADKVQ-----AKIIVEAANGPLTPA-AHAML 398 (535)
Q Consensus 355 ~~~DILiPaA~~~~It~~na~~i~-----AkiIvEgAN~p~T~e-A~~iL 398 (535)
.++|++|-|.-..... +-++.++ --.|+-.-||--..+ ..+.|
T Consensus 69 ~~~D~viv~vK~~~~~-~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~ 117 (305)
T PRK05708 69 EPIHRLLLACKAYDAE-PAVASLAHRLAPGAELLLLQNGLGSQDAVAARV 117 (305)
T ss_pred cccCEEEEECCHHhHH-HHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhC
Confidence 4889999997654322 3333332 135777788875433 33443
No 485
>PRK07454 short chain dehydrogenase; Provisional
Probab=70.73 E-value=11 Score=36.61 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=27.7
Q ss_pred CCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 279 ENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 279 ~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
+++++.|.|. |.+|+.+++.|.++|++|+.++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~ 37 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVA 37 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 4578999985 9999999999999999988843
No 486
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.70 E-value=6.3 Score=42.53 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=28.4
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH 312 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~ 312 (535)
+.++|.|.|+|..|..+|++|+++|++|++ +|.
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~~V~g-~D~ 34 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGVYVIG-VDK 34 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCCEEEE-EeC
Confidence 346899999999999999999999998766 443
No 487
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.68 E-value=8.1 Score=36.97 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=29.4
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecC
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEH 312 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~ 312 (535)
++.++|.|.| .|.+|+++++.|.+.|++|+.++.+
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 4568999998 5999999999999999998775543
No 488
>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
Probab=70.57 E-value=24 Score=32.80 Aligned_cols=57 Identities=23% Similarity=0.084 Sum_probs=45.2
Q ss_pred CchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913 249 SATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH 312 (535)
Q Consensus 249 ~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~ 312 (535)
..|-|-...+.+.+.+ .+...| ++...|.|.|+|.--..+.+.|+..|.+|.-|.|.
T Consensus 57 k~tpyAA~~aa~~aa~---~a~e~G----i~~v~v~vkgpG~GreaAiraL~~ag~~i~~I~Dv 113 (129)
T COG0100 57 KSTPYAAQLAAEDAAK---KAKEHG----IKSVEVKVKGPGPGREAAIRALAAAGLKITRIEDV 113 (129)
T ss_pred CCCHHHHHHHHHHHHH---HHHHhC----ccEEEEEEECCCCcHHHHHHHHHHccceEEEEEEc
Confidence 7777776666665543 223355 47889999999999999999999999999999996
No 489
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=70.51 E-value=5.5 Score=42.12 Aligned_cols=30 Identities=27% Similarity=0.173 Sum_probs=26.6
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVs 310 (535)
..|+|+|.|.+|..+|..|.+.|.+|+-+=
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E 33 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIE 33 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEc
Confidence 579999999999999999999999886543
No 490
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=70.44 E-value=9.9 Score=44.28 Aligned_cols=28 Identities=18% Similarity=0.015 Sum_probs=25.3
Q ss_pred cEEEEEccccHHHHHHHHHH-HCCCeEEE
Q psy1913 281 KTYIVQGFGNVGFHAARYFR-RGRAKCLA 308 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~-e~GakVVa 308 (535)
++|+|.|.|.+|..+|..++ ..|..|+-
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l 333 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRI 333 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEE
Confidence 58999999999999999988 58999876
No 491
>CHL00041 rps11 ribosomal protein S11
Probab=70.42 E-value=23 Score=32.10 Aligned_cols=65 Identities=25% Similarity=0.221 Sum_probs=48.1
Q ss_pred CCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceE
Q psy1913 245 RGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAI 316 (535)
Q Consensus 245 ~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~i 316 (535)
.|....|-|....+.+.+.+ .+..+| ++...|.|-|+|.=-..+.+.|.+.|.+|+-|.|....-
T Consensus 48 Kg~rK~T~~Aa~~~a~~~~~---~~~~~g----i~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~I~D~Tpip 112 (116)
T CHL00041 48 KGARKGTPFAAQTAAENAIR---TVIDQG----MKRAEVMIKGPGLGRDTALRAIRRSGLKLSSIRDVTPMP 112 (116)
T ss_pred CCCccCCHHHHHHHHHHHHH---HHHHcC----CcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCC
Confidence 34556777776666665553 334455 467999999999877788899999999999999975443
No 492
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=70.13 E-value=6.4 Score=43.00 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=29.5
Q ss_pred CCCcEEEEEccccHHHH-HHHHHHHCCCeEEEEecC
Q psy1913 278 MENKTYIVQGFGNVGFH-AARYFRRGRAKCLAIVEH 312 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~-~A~~L~e~GakVVaVsD~ 312 (535)
.++++|.|.|.|..|.. +|++|.++|++|++ +|.
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~-~D~ 39 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSG-SDL 39 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEE-ECC
Confidence 36789999999999999 79999999999876 443
No 493
>PRK07236 hypothetical protein; Provisional
Probab=70.03 E-value=6.1 Score=41.73 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=29.8
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD 313 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~ 313 (535)
++..+|+|+|.|.+|..+|..|.+.|.+|+ |.|..
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~-v~E~~ 38 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVD-VFERS 38 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEE-EEecC
Confidence 456899999999999999999999999865 45543
No 494
>PRK08013 oxidoreductase; Provisional
Probab=70.02 E-value=5.4 Score=42.51 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=27.2
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH 312 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~ 312 (535)
..|+|+|.|.+|..+|..|.+.|.+|+ |.|.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~-viE~ 34 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVA-VLEQ 34 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEE-EEeC
Confidence 579999999999999999999999975 5554
No 495
>PRK08278 short chain dehydrogenase; Provisional
Probab=69.83 E-value=7.8 Score=38.79 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=29.4
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs 310 (535)
++++++.|.| .|-+|+++|+.|.++|++|+.++
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~ 37 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGANIVIAA 37 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 5788999999 58999999999999999998764
No 496
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=69.73 E-value=9.5 Score=39.63 Aligned_cols=31 Identities=29% Similarity=0.255 Sum_probs=28.6
Q ss_pred CCcEEEEEccccHHHHHHHHHHHCCCeEEEE
Q psy1913 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAI 309 (535)
Q Consensus 279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaV 309 (535)
.|.+|+|.|.|.+|..+++++...|++|+++
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~ 196 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAI 196 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 5889999999999999999999999998883
No 497
>PRK06180 short chain dehydrogenase; Provisional
Probab=69.71 E-value=11 Score=37.71 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=28.0
Q ss_pred CCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913 279 ENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV 310 (535)
Q Consensus 279 ~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs 310 (535)
.++++.|.|. |.+|+++++.|.+.|++|++++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~ 35 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTV 35 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEe
Confidence 4678999995 8999999999999999998854
No 498
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=69.67 E-value=4.3 Score=42.91 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=40.6
Q ss_pred CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceE-e---CCCCCCCCHHHHHHHHH
Q psy1913 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAI-V---PDKGTEINYKDLHTYKI 334 (535)
Q Consensus 278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~i-y---np~G~dLDi~~L~~~~~ 334 (535)
|+|++|+|+|+|+=|..=|.-|.+.|..|+ |.=+.|+. + -++| +++..+.+..+
T Consensus 16 LkgK~iaIIGYGsQG~ahalNLRDSGlnVi-iGlr~g~~s~~kA~~dG--f~V~~v~ea~k 73 (338)
T COG0059 16 LKGKKVAIIGYGSQGHAQALNLRDSGLNVI-IGLRKGSSSWKKAKEDG--FKVYTVEEAAK 73 (338)
T ss_pred hcCCeEEEEecChHHHHHHhhhhhcCCcEE-EEecCCchhHHHHHhcC--CEeecHHHHhh
Confidence 789999999999999999999999999754 34444444 3 4567 77666655544
No 499
>PRK06753 hypothetical protein; Provisional
Probab=69.44 E-value=5.8 Score=41.35 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=26.4
Q ss_pred cEEEEEccccHHHHHHHHHHHCCCeEEEEec
Q psy1913 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVE 311 (535)
Q Consensus 281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD 311 (535)
++|+|+|.|.+|..+|..|++.|.+|+- -|
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v-~E 30 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKV-FE 30 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEE-Ee
Confidence 4799999999999999999999998654 44
No 500
>PRK06198 short chain dehydrogenase; Provisional
Probab=69.36 E-value=8.2 Score=37.76 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=27.5
Q ss_pred CCCcEEEEEc-cccHHHHHHHHHHHCCCe-EEE
Q psy1913 278 MENKTYIVQG-FGNVGFHAARYFRRGRAK-CLA 308 (535)
Q Consensus 278 l~g~~VaIQG-fGnVG~~~A~~L~e~Gak-VVa 308 (535)
++++++.|.| .|.+|..+++.|.+.|++ |+.
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~ 36 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVI 36 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEE
Confidence 6789999999 489999999999999999 655
Done!