RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1913
(535 letters)
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos
taurus) [TaxId: 9913]}
Length = 293
Score = 239 bits (611), Expect = 7e-76
Identities = 140/291 (48%), Positives = 192/291 (65%), Gaps = 5/291 (1%)
Query: 246 GRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAK 305
GR SATGRGVF E + N YM +G+ P +KT+ VQGFGNVG H+ RY R AK
Sbjct: 2 GRISATGRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAK 61
Query: 306 CLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAI 365
C+A+ E D +I G I+ K+L +K+ GTI G+P K I+ DIL+PAA
Sbjct: 62 CVAVGESDGSIWNPDG--IDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAAS 119
Query: 366 EKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLK 425
EK + KSNA +V+AKII E ANGP TP A + L++N+++IPD++ NAGGVTVSYF+ LK
Sbjct: 120 EKQLTKSNAPRVKAKIIAEGANGPTTPQADKIFLERNIMVIPDLYLNAGGVTVSYFQILK 179
Query: 426 NISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKK---IRIQKSAMYEDRISNATEKD 482
N++H S GR++F Y+++ + LL S+ SL F K I I +A ++DRIS A+EKD
Sbjct: 180 NLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKD 239
Query: 483 IVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGL 533
IV S L ++M+R+ R I+ A K + LDLR AAY +A+ K+F+ Y EAG+
Sbjct: 240 IVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGV 290
>d1hwxa2 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos
taurus) [TaxId: 9913]}
Length = 208
Score = 205 bits (524), Expect = 4e-64
Identities = 97/207 (46%), Positives = 140/207 (67%), Gaps = 1/207 (0%)
Query: 38 DKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEI 97
+++P FF+ VE +F R + + ++ R+ T E R GI+ +++ + +L +
Sbjct: 3 REDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRQ-TQEQKRNRVRGILRIIKPCNHVLSL 61
Query: 98 QFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVP 157
FP RRD G +E+I+ YR H ++P KGGIRY+ DV+ DEVKALA+LMTYK + +VP
Sbjct: 62 SFPIRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVP 121
Query: 158 FGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYD 217
FGGAK G++I+P Y + +LE+ITR+F +EL KK ++GPG+DVPAP+ +T REMSW D
Sbjct: 122 FGGAKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPAPNMSTGEREMSWIAD 181
Query: 218 AYAKTLGSTNINALGMVTGKPLFLGGI 244
YA T+G +INA VTGKP+ GGI
Sbjct: 182 TYASTIGHYDINAHACVTGKPISQGGI 208
>d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 175
Score = 155 bits (394), Expect = 2e-45
Identities = 75/199 (37%), Positives = 109/199 (54%), Gaps = 26/199 (13%)
Query: 44 FFESVEYYFHRAVQNL-IPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFR 102
+E F+RA + + + +++ +L ++FP R
Sbjct: 2 LYEMAVEQFNRAASLMDLES--------------------DLAEVLRRPKRVLIVEFPVR 41
Query: 103 RDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAK 162
D G E+ YR H + P KGGIRY DV DEVKALA MT+K + N+PFGG K
Sbjct: 42 MDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGK 101
Query: 163 GGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKT 222
GG+R+DP K + ELER++R+F E+ + +GP D+PAPD NT+A ++W+ D Y+
Sbjct: 102 GGVRVDPKKLSRNELERLSRRFFSEI--QVIIGPYNDIPAPDVNTNADVIAWYMDTYSMN 159
Query: 223 LGSTNINALGMVTGKPLFL 241
+G T LG+VTGKP+ L
Sbjct: 160 VGHT---VLGIVTGKPVEL 175
>d1v9la2 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyrobaculum
islandicum [TaxId: 2277]}
Length = 176
Score = 155 bits (393), Expect = 2e-45
Identities = 67/198 (33%), Positives = 98/198 (49%), Gaps = 26/198 (13%)
Query: 43 GFFESVEYYFHRAVQNL-IPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPF 101
GF E V Y + V+ PE ++ +L + P
Sbjct: 2 GFLEYVLNYVKKGVELGGFPE--------------------DFYKILSRPRRVLIVNIPV 41
Query: 102 RRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGA 161
R D G +E+ + YR HC P KGG+R+ +V + ALA LMT KNS + +P+GGA
Sbjct: 42 RLDGGGFEVFEGYRVQHCDVLGPYKGGVRFHPEVTLADDVALAILMTLKNSLAGLPYGGA 101
Query: 162 KGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAK 221
KG +R+DP K + RELE ++R +A + +G +D+PAPD T+A+ M+W D Y+K
Sbjct: 102 KGAVRVDPKKLSQRELEELSRGYARAIAP--LIGDVVDIPAPDVGTNAQIMAWMVDEYSK 159
Query: 222 TLGSTNINALGMVTGKPL 239
N G+ T KP
Sbjct: 160 I---KGYNVPGVFTSKPP 174
>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 178
Score = 155 bits (393), Expect = 3e-45
Identities = 64/202 (31%), Positives = 101/202 (50%), Gaps = 26/202 (12%)
Query: 41 NPGFFESVEYYFHRAVQNL-IPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQF 99
+P +E V RA Q + I E + ++ ++E+
Sbjct: 2 DP--YEIVIKQLERAAQYMEISE--------------------EALEFLKRPQRIVEVTI 39
Query: 100 PFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFG 159
P D G ++ +R H + PTKGGIR+ + VKALAA MT+K + ++P+G
Sbjct: 40 PVEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYG 99
Query: 160 GAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAY 219
G KGGI +DP K ++RE ER+ R + + + + P D+PAPD T+ + M+W D Y
Sbjct: 100 GGKGGIIVDPKKLSDREKERLARGYIRAIY--DVISPYEDIPAPDVYTNPQIMAWMMDEY 157
Query: 220 AKTLGSTNINALGMVTGKPLFL 241
+T+ A G++TGKPL +
Sbjct: 158 -ETISRRKTPAFGIITGKPLSI 178
>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium
symbiosum [TaxId: 1512]}
Length = 194
Score = 146 bits (369), Expect = 9e-42
Identities = 58/198 (29%), Positives = 91/198 (45%), Gaps = 16/198 (8%)
Query: 39 KENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQ 98
K+ E F + V+ +V D ++ M ++E +
Sbjct: 13 KKYAD-----EPEFVQTVE------EVLSSLGPVVDAHPEYEEVALLERMVIPERVIEFR 61
Query: 99 FPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPF 158
P+ D+G+ + YR P KGG+R+A VN +K L +K+S + +P
Sbjct: 62 VPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLPM 121
Query: 159 GGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDA 218
GGAKGG DP+ ++RE+ R + F EL + ++GP IDVPA D ARE+ + Y
Sbjct: 122 GGAKGGSDFDPNGKSDREVMRFCQAFMTELYR--HIGPDIDVPAGDLGVGAREIGYMYGQ 179
Query: 219 YAKTLGSTNINALGMVTG 236
Y K +G G++TG
Sbjct: 180 YRKIVGGF---YNGVLTG 194
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium
symbiosum [TaxId: 1512]}
Length = 255
Score = 144 bits (365), Expect = 2e-40
Identities = 68/308 (22%), Positives = 93/308 (30%), Gaps = 66/308 (21%)
Query: 237 KPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAA 296
K GG R ATG G E M + KT + GFGNV + AA
Sbjct: 1 KARSFGGSLVRPEATGYGSVYYVE------AVMKHENDT--LVGKTVALAGFGNVAWGAA 52
Query: 297 RYFRRGRAKCLAIVEHDTAIVPDKGTEINYKD---LHTYKITKGTIKGYPGTKSAPT--- 350
+ AK + + D I +G K L + ++ Y
Sbjct: 53 KKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPG 112
Query: 351 -DIMFDKVDILVPAAIEKVIRKSNADKVQA---KIIVEAANGPLTPAAHAMLLK-KNVLI 405
KVDI++P A + + A K+ A K +E AN P T A L++ N+++
Sbjct: 113 EKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVV 172
Query: 406 IPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRI 465
P NAGGV VS FE +N S
Sbjct: 173 APSKAVNAGGVLVSGFEMSQNSERLSWTAE------------------------------ 202
Query: 466 QKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIF 525
V S L M AE+ +L A KI
Sbjct: 203 -----------------EVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIA 245
Query: 526 KTYEEAGL 533
G+
Sbjct: 246 DAMMAQGI 253
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 239
Score = 139 bits (350), Expect = 1e-38
Identities = 85/294 (28%), Positives = 136/294 (46%), Gaps = 60/294 (20%)
Query: 242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYF-R 300
GG GR AT RG E +G + ++ KT +QG+GN G++ A+
Sbjct: 1 GGSLGRIEATARGASYTIR------EAAKVLGWDT-LKGKTIAIQGYGNAGYYLAKIMSE 53
Query: 301 RGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFD-KVDI 359
K +A+ + I G +N ++ +K G++K +PG + + + + +VD+
Sbjct: 54 DFGMKVVAVSDSKGGIYNPDG--LNADEVLKWKNEHGSVKDFPGATNITNEELLELEVDV 111
Query: 360 LVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVS 419
L PAAIE+VI K NAD ++AKI+ E ANGP+TP A +L +K +L IPD NAGGVTVS
Sbjct: 112 LAPAAIEEVITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVS 171
Query: 420 YFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNAT 479
YFEW++NI+
Sbjct: 172 YFEWVQNITGYY-----------------------------------------------W 184
Query: 480 EKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGL 533
+ V+ L M +A D+ A++ + +R+AAY A+ ++++ + G
Sbjct: 185 TIEEVRERLDKKMTKAFYDVYNIAKE--KNIHMRDAAYVVAVQRVYQAMLDRGW 236
>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 234
Score = 133 bits (336), Expect = 1e-36
Identities = 93/293 (31%), Positives = 142/293 (48%), Gaps = 61/293 (20%)
Query: 242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYF-R 300
GG +GRE ATGRGV A M +G++P + T VQGFGNVG AA +
Sbjct: 1 GGSKGREEATGRGVKVCAG------LAMDVLGIDP--KKATVAVQGFGNVGQFAALLISQ 52
Query: 301 RGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFD-KVDI 359
+K +A+ + I +G + ++L YK GT+ YP + + + + VDI
Sbjct: 53 ELGSKVVAVSDSRGGIYNPEG--FDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDI 110
Query: 360 LVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVS 419
LVPAA+E I NA++++AK +VE ANGP TP A +L ++ +L++PDI ANAGGVTVS
Sbjct: 111 LVPAALEGAIHAGNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVS 170
Query: 420 YFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNAT 479
YFEW++++
Sbjct: 171 YFEWVQDLQSFFWDL--------------------------------------------- 185
Query: 480 EKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAG 532
D V+++L M+ A D+++ EK +D+R AAY A+ ++ ++ G
Sbjct: 186 --DQVRNALEKMMKGAFNDVMKVKEK--YNVDMRTAAYILAIDRVAYATKKRG 234
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum
islandicum [TaxId: 2277]}
Length = 242
Score = 126 bits (317), Expect = 7e-34
Identities = 77/295 (26%), Positives = 122/295 (41%), Gaps = 61/295 (20%)
Query: 243 GIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRG 302
G RE ATG GV A E ++ +E KT +QG GNVG A + +
Sbjct: 2 GNPVREYATGFGVAVATR------EMAKKLWGG--IEGKTVAIQGMGNVGRWTAYWLEKM 53
Query: 303 RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSA-----PTDIMFDKV 357
AK +A+ + + +G + + ++ + +A P I V
Sbjct: 54 GAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKLDV 113
Query: 358 DILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVT 417
DI VPAAIE VIR NA V+A+++VE ANGP TP A +L ++ V+++PDI ANAGGV
Sbjct: 114 DIFVPAAIENVIRGDNAGLVKARLVVEGANGPTTPEAERILYERGVVVVPDILANAGGVI 173
Query: 418 VSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISN 477
+SY EW++N+
Sbjct: 174 MSYLEWVENLQWYIWDE------------------------------------------- 190
Query: 478 ATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAG 532
+ + L + M + + ++ + +R+AA +AL +I+ + G
Sbjct: 191 ----EETRKRLENIMVNNVERVYKRWQR-EKGWTMRDAAIVTALERIYNAMKIRG 240
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus
sphaericus [TaxId: 1421]}
Length = 230
Score = 117 bits (293), Expect = 1e-30
Identities = 49/252 (19%), Positives = 75/252 (29%), Gaps = 45/252 (17%)
Query: 236 GKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHA 295
G G T GV+ + E +E VQG GNV
Sbjct: 1 GISPAFGSSGNPSPVTAYGVYRGMK------AAAKEAFGSDSLEGLAVSVQGLGNVAKAL 54
Query: 296 ARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFD 355
+ AK + + A+ + AP I
Sbjct: 55 CKKLNTEGAKLVVTDVNKAAV-------------------SAAVAEEGADAVAPNAIYGV 95
Query: 356 KVDILVPAAIEKVIRKSNADKVQAKIIVE-AANGPLTPAAHAMLLKKNVLIIPDIFANAG 414
DI P A+ V+ +++AK+I A N P L + ++ PD NAG
Sbjct: 96 TCDIFAPCALGAVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHELGIVYAPDYVINAG 155
Query: 415 GVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKS------ 468
GV E +GY++ + + I S+ F R
Sbjct: 156 GVINVADEL-------------YGYNRTRAMKRVDGIYDSIEKIFAISKRDGVPSYVAAD 202
Query: 469 AMYEDRISNATE 480
M E+RI+ +
Sbjct: 203 RMAEERIAKVAK 214
>d1leha2 c.58.1.1 (A:1-134) Leucine dehydrogenase {Bacillus
sphaericus [TaxId: 1421]}
Length = 134
Score = 110 bits (277), Expect = 2e-29
Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 15/128 (11%)
Query: 96 EIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYA----LDVNPDEVKALAALMTYKN 151
++ F SG ++ H T P GG R + ++ LA MTYKN
Sbjct: 14 QLVFCQDEASG----LKAVIAIHDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYKN 69
Query: 152 SCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSARE 211
+ + + GG K I DP N ++ R +F L G + A D T+ +
Sbjct: 70 AAAGLNLGGGKTVIIGDPFADKNEDMFRALGRFIQGL-------NGRYITAEDVGTTVDD 122
Query: 212 MSWFYDAY 219
M +
Sbjct: 123 MDLIHQET 130
>d1c1da2 c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rhodococcus
sp., M4 [TaxId: 1831]}
Length = 148
Score = 104 bits (261), Expect = 4e-27
Identities = 36/132 (27%), Positives = 49/132 (37%), Gaps = 22/132 (16%)
Query: 118 HCTHKSPTKGGIRYALDVNPDE----VKALAALMTYKNSCSNVPFGGAKGGIRIDPSKY- 172
T P GG R A N + LA MT K + SN+P GG K I + ++
Sbjct: 30 DSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALPAPRHS 89
Query: 173 -NNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINAL 231
+ RI R A + K + G PD NT++ +M D
Sbjct: 90 IDPSTWARILRIHAENIDKLS----GNYWTGPDVNTNSADMDTLNDTT------------ 133
Query: 232 GMVTGKPLFLGG 243
V G+ L GG
Sbjct: 134 EFVFGRSLERGG 145
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase
{Rhodococcus sp., M4 [TaxId: 1831]}
Length = 201
Score = 91.0 bits (225), Expect = 9e-22
Identities = 48/237 (20%), Positives = 77/237 (32%), Gaps = 46/237 (19%)
Query: 250 ATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAI 309
T GVF A + + GL ++ T +VQG G VG A A+ L
Sbjct: 4 TTAVGVFEAMK------ATVAHRGLGS-LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVA 56
Query: 310 VEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVI 369
+ T A D++ D+ P A+ VI
Sbjct: 57 DTDTERV--------------------AHAVALGHTAVALEDVLSTPCDVFAPCAMGGVI 96
Query: 370 RKSNADKVQAKIIVEAANGPLT-PAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNIS 428
A + ++ AAN + AA +L + +L PD ANAGG +
Sbjct: 97 TTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLVGREV---- 152
Query: 429 HSSLGRMSFGYDKEISDLLLSSIDTSLSDTF----NKKIRIQKSAMY--EDRISNAT 479
G+ + + +I +L+ F N + ++A R A+
Sbjct: 153 --------LGWSESVVHERAVAIGDTLNQVFEISDNDGVTPDEAARTLAGRRAREAS 201
>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain
3 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 153
Score = 29.4 bits (65), Expect = 0.62
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 238 PLFLGGIRGRESATGRGVFTAAEIL--VNN--EEYMCEIGLEPCMENKTYIVQGFGNVGF 293
+F G + + G +T+ + L V + MC IV G G+ F
Sbjct: 5 DIFQG-LTQDQ-----GFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAF 58
Query: 294 HAARYFRRGRAKCLAIVE 311
A R A+ + +V
Sbjct: 59 DCATSALRCGARRVFLVF 76
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId:
1423]}
Length = 134
Score = 28.7 bits (63), Expect = 0.84
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 281 KTYIVQGFGNVGFHAARYFRR 301
K + V G G G + R
Sbjct: 1 KQFAVIGLGRFGGSIVKELHR 21
>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase
{Crithidia fasciculata [TaxId: 5656]}
Length = 240
Score = 29.1 bits (64), Expect = 1.0
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 280 NKTY--IVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK 336
++ Y +V G G+ G A K +A+++ P + ++ + K
Sbjct: 1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPK 59
>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit,
NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]}
Length = 150
Score = 27.9 bits (61), Expect = 2.2
Identities = 19/141 (13%), Positives = 36/141 (25%), Gaps = 22/141 (15%)
Query: 57 QNLIPEFDVSIRARKFTDEDIA-------LRRNGIIML----------MQNYSSLLEIQF 99
QNL+ E ++ + D+++ RN + + ++
Sbjct: 2 QNLVSEAGLTQKLLIHGDKELFQHELKTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVI 61
Query: 100 PFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFG 159
R++ G H + G +VPF
Sbjct: 62 VSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCG-----YHGWGYGSNGELQSVPFE 116
Query: 160 GAKGGIRIDPSKYNNRELERI 180
G I +E+ RI
Sbjct: 117 KELYGDAIKKKCLGLKEVPRI 137
>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor
(AIF) {Human (Homo sapiens) [TaxId: 9606]}
Length = 213
Score = 28.1 bits (61), Expect = 2.3
Identities = 13/97 (13%), Positives = 26/97 (26%)
Query: 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT 338
+ +++ G G F AAR R ++ + +P ++ + +
Sbjct: 3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTK 62
Query: 339 IKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNAD 375
+ I F V A I
Sbjct: 63 TLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVA 99
>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus
thermophilus [TaxId: 274]}
Length = 271
Score = 27.8 bits (61), Expect = 3.1
Identities = 13/70 (18%), Positives = 23/70 (32%)
Query: 84 IIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKAL 143
+ + Y+ LLEI P+ G+ +IQ +G + +V K L
Sbjct: 35 AVEEVLPYADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPL 94
Query: 144 AALMTYKNSC 153
+
Sbjct: 95 FLMTYLNPVL 104
>d1jboa_ a.1.1.3 (A:) Phycocyanin alpha subunit {Synechococcus
elongatus [TaxId: 32046]}
Length = 162
Score = 26.7 bits (59), Expect = 4.2
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 258 AAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH 312
AA L NN + + + + + Y G+ G+AKC + +
Sbjct: 40 AARALTNNAQSLIDGAAQAVYQKFPYTTTMQGS----QYASTPEGKAKCARDIGY 90
>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide
dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Length = 229
Score = 27.2 bits (59), Expect = 4.9
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 4/85 (4%)
Query: 284 IVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYP 343
+V G G G+ AA K AIVE + G +N + + +
Sbjct: 10 VVLGGGPGGYSAAFAAADEGLKV-AIVERYKTLG---GVCLNVGCIPSKALLHNAAVIDE 65
Query: 344 GTKSAPTDIMFDKVDILVPAAIEKV 368
A I + + ++ +
Sbjct: 66 VRHLAANGIKYPEPELDIDMLRAYK 90
>d1xkra_ d.252.1.1 (A:) Chemotaxis protein CheC {Thermotoga maritima
[TaxId: 2336]}
Length = 205
Score = 26.8 bits (59), Expect = 5.5
Identities = 9/47 (19%), Positives = 21/47 (44%)
Query: 441 KEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSS 487
+EI +++ + ++L+D KI + D IS + ++
Sbjct: 112 REIGNIMCGTYVSALADFLGFKIDTLPPQLVIDMISAIFAEASIEEL 158
>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase
{Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 192
Score = 26.8 bits (58), Expect = 5.6
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 278 MENKTY--IVQGFGNVGFHAARYFRRGRAKCLAI 309
+E + G G AA Y R K L
Sbjct: 1 LETHNTRLCIVGSGPAAHTAAIYAARAELKPLLF 34
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M
subdomain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 267
Score = 27.0 bits (58), Expect = 5.7
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 375 DKVQAKIIVEAANGPLTP 392
DK+ + I+ ++A P P
Sbjct: 2 DKISSTIVAQSAKVPCIP 19
>d1h6da2 d.81.1.5 (A:213-374) Glucose-fructose oxidoreductase
{Zymomonas mobilis [TaxId: 542]}
Length = 162
Score = 26.6 bits (57), Expect = 6.4
Identities = 8/74 (10%), Positives = 17/74 (22%)
Query: 109 ELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRID 168
E+ + + A + S G K + +D
Sbjct: 72 EVRAYTYSDPNDERFVEVEDRIIWQMRFRSGALSHGASSYSTTTTSRFSVQGDKAVLLMD 131
Query: 169 PSKYNNRELERITR 182
P+ + L +
Sbjct: 132 PATGYYQNLISVQT 145
>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 408
Score = 26.9 bits (58), Expect = 8.0
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 8/34 (23%)
Query: 160 GAKGGIRIDPSKYNNRE--------LERITRKFA 185
A G R YN +E L+ R F+
Sbjct: 375 DASGSARASLYFYNTKEEIDLFLQSLQATIRFFS 408
>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch
{Escherichia coli [TaxId: 562]}
Length = 153
Score = 26.0 bits (56), Expect = 8.5
Identities = 4/35 (11%), Positives = 9/35 (25%)
Query: 283 YIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIV 317
+IV G + + + I +
Sbjct: 6 FIVCGHSILAINTILQLNQRGQNVTVISNLPEDDI 40
>d2a3la1 c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalytic domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 628
Score = 26.5 bits (58), Expect = 9.6
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 51 YFHRAVQNLIPEFDVSIRARKFTDEDIA-LRRNGIIM 86
H + L+ E+ ++ K + D+ + RN +
Sbjct: 529 QIHLTKEPLVEEYSIAASVWKLSACDLCEIARNSVYQ 565
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2
{Escherichia coli [TaxId: 562]}
Length = 216
Score = 25.9 bits (56), Expect = 9.8
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 375 DKVQAKIIVEAANGPLTPAAH 395
DKV A ++ A P P +
Sbjct: 1 DKVSAIAAMKKAGVPCVPGSD 21
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.392
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,035,840
Number of extensions: 100759
Number of successful extensions: 367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 40
Length of query: 535
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 445
Effective length of database: 1,171,896
Effective search space: 521493720
Effective search space used: 521493720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)