Query psy1914
Match_columns 211
No_of_seqs 179 out of 1980
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 19:30:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04105 SR_beta Signal recogni 100.0 7.5E-32 1.6E-36 203.8 21.2 195 12-210 1-202 (203)
2 PF00025 Arf: ADP-ribosylation 100.0 2.1E-32 4.6E-37 202.4 17.6 163 8-210 11-173 (175)
3 cd04149 Arf6 Arf6 subfamily. 100.0 3.6E-32 7.7E-37 200.0 18.0 161 9-210 7-167 (168)
4 PLN00223 ADP-ribosylation fact 100.0 6.8E-32 1.5E-36 200.7 19.3 161 8-210 14-175 (181)
5 cd04150 Arf1_5_like Arf1-Arf5- 100.0 5.8E-32 1.2E-36 197.2 18.2 158 12-210 1-158 (159)
6 smart00177 ARF ARF-like small 100.0 1.3E-31 2.7E-36 198.4 18.4 161 9-210 11-171 (175)
7 KOG0073|consensus 100.0 1E-31 2.2E-36 187.9 16.5 163 8-210 13-175 (185)
8 KOG0070|consensus 100.0 3.3E-32 7.2E-37 195.0 12.8 163 7-210 13-175 (181)
9 KOG0071|consensus 100.0 9.7E-32 2.1E-36 183.3 13.6 165 5-210 11-175 (180)
10 PTZ00133 ADP-ribosylation fact 100.0 4.7E-31 1E-35 196.4 18.3 162 8-210 14-175 (182)
11 cd04154 Arl2 Arl2 subfamily. 100.0 7.4E-31 1.6E-35 193.8 18.3 162 8-210 11-172 (173)
12 KOG0084|consensus 100.0 3.1E-31 6.7E-36 191.3 14.8 155 9-209 7-168 (205)
13 KOG0090|consensus 100.0 4.4E-31 9.6E-36 192.7 15.3 201 7-211 34-237 (238)
14 cd04158 ARD1 ARD1 subfamily. 100.0 1.5E-30 3.2E-35 191.6 18.1 158 13-210 1-158 (169)
15 KOG0094|consensus 100.0 1E-30 2.2E-35 188.1 15.8 156 10-210 21-182 (221)
16 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.9E-30 4.2E-35 191.8 17.9 161 9-210 13-173 (174)
17 cd04120 Rab12 Rab12 subfamily. 100.0 3.5E-30 7.7E-35 194.1 18.8 154 12-210 1-160 (202)
18 cd04161 Arl2l1_Arl13_like Arl2 100.0 6.2E-30 1.3E-34 187.9 19.0 160 13-210 1-166 (167)
19 smart00178 SAR Sar1p-like memb 100.0 7.4E-30 1.6E-34 190.3 19.3 168 9-210 15-182 (184)
20 cd04157 Arl6 Arl6 subfamily. 100.0 6.3E-30 1.4E-34 186.5 18.2 159 13-210 1-161 (162)
21 cd04156 ARLTS1 ARLTS1 subfamil 100.0 8.3E-30 1.8E-34 185.7 17.4 159 13-211 1-160 (160)
22 cd04151 Arl1 Arl1 subfamily. 100.0 8.6E-30 1.9E-34 185.4 17.5 157 13-210 1-157 (158)
23 cd04121 Rab40 Rab40 subfamily. 100.0 1.7E-29 3.7E-34 188.7 18.9 155 9-210 4-164 (189)
24 cd01875 RhoG RhoG subfamily. 100.0 8.2E-30 1.8E-34 191.2 17.3 168 10-210 2-174 (191)
25 cd04175 Rap1 Rap1 subgroup. T 100.0 1.5E-29 3.2E-34 185.1 18.3 155 11-210 1-160 (164)
26 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.7E-29 3.6E-34 186.5 18.2 155 11-210 2-161 (172)
27 cd04138 H_N_K_Ras_like H-Ras/N 100.0 2.3E-29 5E-34 183.3 18.6 155 11-210 1-159 (162)
28 cd04136 Rap_like Rap-like subf 100.0 1.7E-29 3.7E-34 184.4 17.8 155 11-210 1-160 (163)
29 KOG0092|consensus 100.0 5.8E-30 1.3E-34 184.0 14.4 157 8-210 2-164 (200)
30 cd00879 Sar1 Sar1 subfamily. 100.0 4.8E-29 1E-33 186.8 19.9 172 9-210 17-188 (190)
31 cd04140 ARHI_like ARHI subfami 100.0 3.1E-29 6.7E-34 183.8 18.3 158 11-211 1-163 (165)
32 cd04122 Rab14 Rab14 subfamily. 100.0 4.5E-29 9.8E-34 183.0 18.7 153 12-210 3-161 (166)
33 cd04160 Arfrp1 Arfrp1 subfamil 100.0 2.4E-29 5.1E-34 184.5 16.8 159 13-210 1-166 (167)
34 cd04117 Rab15 Rab15 subfamily. 100.0 7.9E-29 1.7E-33 181.0 18.8 154 12-211 1-160 (161)
35 cd04126 Rab20 Rab20 subfamily. 100.0 5.9E-29 1.3E-33 189.5 18.8 114 12-130 1-114 (220)
36 cd00878 Arf_Arl Arf (ADP-ribos 100.0 7.2E-29 1.6E-33 180.4 18.5 157 13-210 1-157 (158)
37 cd04133 Rop_like Rop subfamily 100.0 2.7E-29 5.9E-34 185.6 16.3 152 12-210 2-170 (176)
38 KOG0078|consensus 100.0 5.1E-29 1.1E-33 182.2 17.1 155 9-209 10-170 (207)
39 PTZ00369 Ras-like protein; Pro 100.0 8.4E-29 1.8E-33 185.4 18.8 157 9-210 3-164 (189)
40 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 8E-29 1.7E-33 182.5 18.3 153 13-210 2-162 (170)
41 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.2E-28 2.6E-33 186.3 19.3 156 12-210 1-165 (201)
42 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.5E-28 3.2E-33 183.2 19.1 161 10-210 2-167 (183)
43 cd04128 Spg1 Spg1p. Spg1p (se 100.0 9.8E-29 2.1E-33 183.9 18.1 158 12-210 1-163 (182)
44 cd04131 Rnd Rnd subfamily. Th 100.0 7.2E-29 1.6E-33 183.9 16.9 114 11-130 1-119 (178)
45 cd04109 Rab28 Rab28 subfamily. 100.0 1.8E-28 3.8E-33 187.2 19.5 156 12-210 1-163 (215)
46 cd04144 Ras2 Ras2 subfamily. 100.0 9.8E-29 2.1E-33 185.2 17.6 155 13-210 1-160 (190)
47 cd01865 Rab3 Rab3 subfamily. 100.0 1.5E-28 3.2E-33 180.2 18.1 153 12-210 2-160 (165)
48 cd04176 Rap2 Rap2 subgroup. T 100.0 1.3E-28 2.8E-33 180.0 17.8 155 11-210 1-160 (163)
49 cd04127 Rab27A Rab27a subfamil 100.0 1.7E-28 3.6E-33 182.2 18.6 156 10-210 3-174 (180)
50 KOG0075|consensus 100.0 7.8E-30 1.7E-34 175.3 10.4 162 8-210 17-179 (186)
51 cd01874 Cdc42 Cdc42 subfamily. 100.0 8.1E-29 1.8E-33 183.3 16.6 166 12-210 2-172 (175)
52 cd00877 Ran Ran (Ras-related n 100.0 1.4E-28 3E-33 180.6 17.0 151 12-210 1-156 (166)
53 cd01871 Rac1_like Rac1-like su 100.0 1.5E-28 3.2E-33 181.8 17.2 168 11-210 1-172 (174)
54 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.5E-28 3.3E-33 182.6 17.3 116 9-130 3-123 (182)
55 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.6E-28 3.6E-33 188.2 17.9 115 10-130 12-131 (232)
56 PLN03071 GTP-binding nuclear p 100.0 1.3E-28 2.9E-33 188.2 17.1 154 9-210 11-169 (219)
57 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 2.6E-28 5.6E-33 178.8 17.9 157 13-211 1-164 (164)
58 cd04119 RJL RJL (RabJ-Like) su 100.0 4.3E-28 9.3E-33 177.6 18.9 156 12-210 1-164 (168)
59 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2.9E-28 6.3E-33 178.1 17.9 155 11-210 2-161 (164)
60 cd01867 Rab8_Rab10_Rab13_like 100.0 4.8E-28 1E-32 177.8 18.9 154 11-210 3-162 (167)
61 cd04155 Arl3 Arl3 subfamily. 100.0 3.5E-28 7.6E-33 179.3 18.2 162 8-210 11-172 (173)
62 smart00173 RAS Ras subfamily o 100.0 4.2E-28 9E-33 177.4 18.1 154 12-210 1-159 (164)
63 PF09439 SRPRB: Signal recogni 100.0 3E-29 6.6E-34 183.3 11.9 175 10-185 2-181 (181)
64 KOG0098|consensus 100.0 1.6E-28 3.4E-33 175.5 15.0 154 9-208 4-163 (216)
65 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 5.7E-28 1.2E-32 177.1 18.3 153 12-210 3-161 (166)
66 cd04110 Rab35 Rab35 subfamily. 100.0 7.2E-28 1.6E-32 181.8 19.3 155 9-210 4-164 (199)
67 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 4.1E-28 9E-33 185.0 18.0 116 11-131 1-120 (222)
68 cd04116 Rab9 Rab9 subfamily. 100.0 6.8E-28 1.5E-32 177.3 18.5 160 9-210 3-168 (170)
69 cd01864 Rab19 Rab19 subfamily. 100.0 7.1E-28 1.5E-32 176.5 18.5 156 10-210 2-163 (165)
70 cd04111 Rab39 Rab39 subfamily. 100.0 8.2E-28 1.8E-32 182.9 19.0 155 11-210 2-163 (211)
71 cd04159 Arl10_like Arl10-like 100.0 1.1E-27 2.4E-32 173.4 18.3 157 14-211 2-159 (159)
72 cd04106 Rab23_lke Rab23-like s 100.0 1.2E-27 2.6E-32 174.5 18.2 152 12-210 1-160 (162)
73 cd04134 Rho3 Rho3 subfamily. 100.0 3.7E-28 8.1E-33 181.9 15.8 166 12-210 1-171 (189)
74 cd01868 Rab11_like Rab11-like. 100.0 1.9E-27 4.2E-32 174.1 18.8 154 11-210 3-162 (165)
75 cd04112 Rab26 Rab26 subfamily. 100.0 1.7E-27 3.7E-32 178.6 18.6 153 12-210 1-160 (191)
76 cd04113 Rab4 Rab4 subfamily. 100.0 2.3E-27 5.1E-32 172.9 18.7 153 12-210 1-159 (161)
77 cd04115 Rab33B_Rab33A Rab33B/R 100.0 2.8E-27 6.2E-32 174.2 18.3 156 11-210 2-166 (170)
78 cd01860 Rab5_related Rab5-rela 100.0 6.3E-27 1.4E-31 170.9 19.2 154 11-210 1-160 (163)
79 cd01861 Rab6 Rab6 subfamily. 100.0 6.1E-27 1.3E-31 170.6 19.0 153 12-210 1-159 (161)
80 smart00176 RAN Ran (Ras-relate 100.0 2.2E-27 4.7E-32 178.7 17.1 146 17-210 1-151 (200)
81 cd04103 Centaurin_gamma Centau 100.0 2.4E-27 5.1E-32 172.6 16.6 150 12-210 1-156 (158)
82 cd04124 RabL2 RabL2 subfamily. 100.0 5.7E-27 1.2E-31 171.1 18.5 150 12-210 1-155 (161)
83 cd04132 Rho4_like Rho4-like su 100.0 3.6E-27 7.8E-32 176.2 17.6 153 12-210 1-164 (187)
84 cd01866 Rab2 Rab2 subfamily. 100.0 6.7E-27 1.5E-31 171.9 18.8 154 11-210 4-163 (168)
85 cd04143 Rhes_like Rhes_like su 100.0 3.7E-27 8.1E-32 182.9 18.2 158 12-210 1-168 (247)
86 KOG0394|consensus 100.0 8.6E-28 1.9E-32 171.4 12.7 162 7-210 5-175 (210)
87 cd01863 Rab18 Rab18 subfamily. 100.0 1.1E-26 2.5E-31 169.3 19.0 154 12-210 1-159 (161)
88 cd04101 RabL4 RabL4 (Rab-like4 100.0 9.3E-27 2E-31 170.2 18.5 152 12-210 1-161 (164)
89 cd04177 RSR1 RSR1 subgroup. R 100.0 6.1E-27 1.3E-31 172.1 17.6 156 11-210 1-161 (168)
90 cd04125 RabA_like RabA-like su 100.0 1.1E-26 2.5E-31 173.7 19.2 153 12-210 1-159 (188)
91 PLN03110 Rab GTPase; Provision 100.0 1E-26 2.2E-31 177.5 18.7 155 10-210 11-171 (216)
92 cd04142 RRP22 RRP22 subfamily. 100.0 5.8E-27 1.3E-31 176.5 17.1 158 12-210 1-171 (198)
93 PLN03118 Rab family protein; P 100.0 1.6E-26 3.4E-31 176.0 19.4 158 9-210 12-174 (211)
94 KOG0080|consensus 100.0 2E-27 4.4E-32 165.9 13.1 155 10-209 10-170 (209)
95 cd04139 RalA_RalB RalA/RalB su 100.0 2.1E-26 4.5E-31 168.1 18.6 154 12-210 1-159 (164)
96 cd04118 Rab24 Rab24 subfamily. 100.0 2.2E-26 4.7E-31 172.8 18.5 155 12-210 1-163 (193)
97 cd01862 Rab7 Rab7 subfamily. 100.0 3.4E-26 7.3E-31 168.4 19.0 156 12-210 1-164 (172)
98 smart00174 RHO Rho (Ras homolo 99.9 8.6E-27 1.9E-31 172.1 15.8 164 14-210 1-169 (174)
99 smart00175 RAB Rab subfamily o 99.9 3.5E-26 7.7E-31 166.9 18.8 153 12-210 1-159 (164)
100 cd01893 Miro1 Miro1 subfamily. 99.9 3E-26 6.5E-31 168.1 18.4 158 12-210 1-161 (166)
101 KOG0074|consensus 99.9 2E-27 4.4E-32 162.5 10.9 166 4-210 10-176 (185)
102 PLN03108 Rab family protein; P 99.9 4E-26 8.7E-31 173.6 18.8 155 10-210 5-165 (210)
103 cd01870 RhoA_like RhoA-like su 99.9 2E-26 4.3E-31 170.3 16.5 168 11-210 1-172 (175)
104 cd00154 Rab Rab family. Rab G 99.9 5.7E-26 1.2E-30 164.3 18.4 152 12-210 1-159 (159)
105 cd04130 Wrch_1 Wrch-1 subfamil 99.9 3E-26 6.5E-31 169.2 16.8 114 12-131 1-119 (173)
106 cd04123 Rab21 Rab21 subfamily. 99.9 7.9E-26 1.7E-30 164.6 18.8 153 12-210 1-159 (162)
107 cd01892 Miro2 Miro2 subfamily. 99.9 1.4E-26 3E-31 170.4 14.8 155 9-210 2-163 (169)
108 KOG0086|consensus 99.9 1.4E-26 3E-31 160.5 13.7 150 11-205 9-163 (214)
109 cd04146 RERG_RasL11_like RERG/ 99.9 2.2E-26 4.8E-31 168.5 15.5 154 13-210 1-161 (165)
110 cd04148 RGK RGK subfamily. Th 99.9 5.7E-26 1.2E-30 173.9 18.2 152 12-210 1-160 (221)
111 cd04135 Tc10 TC10 subfamily. 99.9 3E-26 6.6E-31 169.1 16.0 167 12-210 1-171 (174)
112 cd04114 Rab30 Rab30 subfamily. 99.9 1.5E-25 3.2E-30 164.6 19.0 156 9-210 5-166 (169)
113 KOG0072|consensus 99.9 2.9E-27 6.2E-32 162.2 9.0 160 9-210 16-176 (182)
114 cd04147 Ras_dva Ras-dva subfam 99.9 8.5E-26 1.8E-30 170.3 17.9 155 13-210 1-160 (198)
115 KOG0087|consensus 99.9 1.9E-26 4.1E-31 168.2 13.6 155 10-209 13-172 (222)
116 cd00157 Rho Rho (Ras homology) 99.9 6.1E-26 1.3E-30 166.9 16.6 158 12-211 1-171 (171)
117 PF00071 Ras: Ras family; Int 99.9 1.2E-25 2.6E-30 164.0 17.7 152 13-210 1-158 (162)
118 KOG0079|consensus 99.9 1.4E-26 3E-31 159.6 11.8 152 12-210 9-166 (198)
119 cd01873 RhoBTB RhoBTB subfamil 99.9 8.3E-26 1.8E-30 169.7 16.6 112 11-130 2-134 (195)
120 cd04137 RheB Rheb (Ras Homolog 99.9 2E-25 4.2E-30 165.8 17.6 154 12-210 2-160 (180)
121 KOG0093|consensus 99.9 7.9E-26 1.7E-30 155.7 13.9 154 10-209 20-179 (193)
122 KOG0095|consensus 99.9 5.2E-26 1.1E-30 157.1 12.5 120 12-136 8-132 (213)
123 cd00876 Ras Ras family. The R 99.9 3.7E-25 8.1E-30 160.7 17.7 153 13-210 1-158 (160)
124 KOG0091|consensus 99.9 8.8E-26 1.9E-30 158.1 13.0 157 10-210 7-170 (213)
125 cd01897 NOG NOG1 is a nucleola 99.9 9E-25 2E-29 160.3 16.8 153 12-210 1-165 (168)
126 cd04129 Rho2 Rho2 subfamily. 99.9 7.7E-25 1.7E-29 163.7 16.3 154 11-210 1-170 (187)
127 cd04171 SelB SelB subfamily. 99.9 1.5E-24 3.3E-29 158.2 17.4 157 12-211 1-164 (164)
128 KOG0076|consensus 99.9 6.4E-26 1.4E-30 160.3 8.5 163 8-210 14-184 (197)
129 PF02421 FeoB_N: Ferrous iron 99.9 6.2E-25 1.4E-29 157.4 12.6 146 12-208 1-156 (156)
130 cd01898 Obg Obg subfamily. Th 99.9 2.6E-24 5.7E-29 158.1 15.9 156 13-211 2-169 (170)
131 PTZ00132 GTP-binding nuclear p 99.9 1.6E-23 3.5E-28 159.9 18.7 155 8-210 6-165 (215)
132 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.2E-23 2.7E-28 154.1 17.2 157 12-210 1-163 (168)
133 KOG0081|consensus 99.9 2.4E-25 5.2E-30 155.3 6.2 154 12-210 10-178 (219)
134 KOG0088|consensus 99.9 1.3E-24 2.9E-29 151.5 9.1 157 8-210 10-172 (218)
135 cd01890 LepA LepA subfamily. 99.9 3.8E-23 8.1E-28 153.2 17.4 150 13-210 2-174 (179)
136 cd01878 HflX HflX subfamily. 99.9 2.9E-23 6.4E-28 157.2 15.9 151 9-210 39-202 (204)
137 TIGR02528 EutP ethanolamine ut 99.9 1.2E-23 2.5E-28 150.4 12.7 135 13-209 2-141 (142)
138 PRK12299 obgE GTPase CgtA; Rev 99.9 4.5E-23 9.8E-28 166.0 17.2 155 12-210 159-325 (335)
139 PRK04213 GTP-binding protein; 99.9 5.6E-23 1.2E-27 155.2 16.4 160 8-210 6-189 (201)
140 cd04102 RabL3 RabL3 (Rab-like3 99.9 7.7E-23 1.7E-27 154.0 16.9 119 12-132 1-145 (202)
141 cd00881 GTP_translation_factor 99.9 1.2E-22 2.7E-27 151.4 18.0 165 13-210 1-184 (189)
142 TIGR02729 Obg_CgtA Obg family 99.9 6.4E-23 1.4E-27 165.0 17.0 155 12-210 158-326 (329)
143 TIGR03156 GTP_HflX GTP-binding 99.9 5E-23 1.1E-27 167.0 16.4 149 10-210 188-349 (351)
144 PRK15494 era GTPase Era; Provi 99.9 7.3E-23 1.6E-27 165.7 16.7 153 9-210 50-213 (339)
145 KOG0097|consensus 99.9 5.1E-23 1.1E-27 141.2 13.2 148 12-205 12-165 (215)
146 cd01879 FeoB Ferrous iron tran 99.9 5.1E-23 1.1E-27 149.3 14.1 144 16-210 1-154 (158)
147 TIGR00231 small_GTP small GTP- 99.9 1.4E-22 3E-27 146.2 16.2 154 11-209 1-160 (161)
148 TIGR00436 era GTP-binding prot 99.9 7.2E-23 1.6E-27 161.3 15.6 149 13-210 2-161 (270)
149 cd01889 SelB_euk SelB subfamil 99.9 3E-22 6.4E-27 150.3 18.2 158 12-210 1-183 (192)
150 KOG0395|consensus 99.9 7.4E-23 1.6E-27 153.1 14.7 156 10-210 2-162 (196)
151 KOG0077|consensus 99.9 8E-23 1.7E-27 143.7 12.3 174 8-210 17-190 (193)
152 cd01891 TypA_BipA TypA (tyrosi 99.9 2.7E-22 5.9E-27 150.7 15.7 111 12-131 3-132 (194)
153 cd01881 Obg_like The Obg-like 99.9 1.7E-22 3.6E-27 149.1 13.1 156 16-211 1-175 (176)
154 KOG0393|consensus 99.9 7.1E-24 1.5E-28 155.8 5.4 116 10-131 3-124 (198)
155 cd01895 EngA2 EngA2 subfamily. 99.9 1.8E-21 3.9E-26 142.9 17.7 156 11-211 2-173 (174)
156 cd00882 Ras_like_GTPase Ras-li 99.9 8.1E-22 1.8E-26 140.8 15.2 152 16-210 1-157 (157)
157 PRK12296 obgE GTPase CgtA; Rev 99.9 7.8E-22 1.7E-26 164.7 16.9 156 11-210 159-337 (500)
158 PRK03003 GTP-binding protein D 99.9 1E-21 2.2E-26 165.7 17.4 156 10-210 210-379 (472)
159 PLN00023 GTP-binding protein; 99.9 1.3E-21 2.9E-26 154.6 15.9 121 9-131 19-166 (334)
160 TIGR00487 IF-2 translation ini 99.9 2.8E-21 6.1E-26 165.5 18.3 158 9-209 85-246 (587)
161 KOG0083|consensus 99.9 1.7E-23 3.8E-28 142.0 3.3 148 15-208 1-155 (192)
162 PF00009 GTP_EFTU: Elongation 99.9 3.9E-21 8.6E-26 143.7 16.4 160 10-210 2-184 (188)
163 PRK12297 obgE GTPase CgtA; Rev 99.9 3.8E-21 8.2E-26 158.6 17.6 152 12-210 159-324 (424)
164 PRK05291 trmE tRNA modificatio 99.9 1.5E-21 3.2E-26 163.4 15.2 144 9-210 213-367 (449)
165 cd01894 EngA1 EngA1 subfamily. 99.9 2E-21 4.3E-26 140.6 13.9 144 15-210 1-155 (157)
166 TIGR03598 GTPase_YsxC ribosome 99.9 5.1E-21 1.1E-25 142.1 16.3 147 8-197 15-177 (179)
167 PRK11058 GTPase HflX; Provisio 99.9 3E-21 6.5E-26 160.0 16.5 151 12-210 198-359 (426)
168 TIGR03594 GTPase_EngA ribosome 99.9 3.8E-21 8.3E-26 161.0 17.3 156 10-210 171-341 (429)
169 cd04164 trmE TrmE (MnmE, ThdF, 99.9 3.2E-21 7E-26 139.4 14.6 143 11-210 1-154 (157)
170 cd01888 eIF2_gamma eIF2-gamma 99.9 4.2E-21 9.2E-26 145.2 15.3 157 12-210 1-196 (203)
171 COG1100 GTPase SAR1 and relate 99.9 5.6E-21 1.2E-25 146.1 15.5 120 11-134 5-129 (219)
172 PRK03003 GTP-binding protein D 99.9 6.5E-21 1.4E-25 160.9 16.8 148 10-210 37-196 (472)
173 PRK05306 infB translation init 99.9 6.6E-21 1.4E-25 167.0 17.2 159 8-209 287-448 (787)
174 PRK00454 engB GTP-binding prot 99.9 1.8E-20 3.9E-25 140.8 17.1 154 9-210 22-191 (196)
175 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.4E-20 3.1E-25 156.8 17.3 115 8-131 200-325 (442)
176 CHL00189 infB translation init 99.9 1.8E-20 3.9E-25 163.0 18.2 159 9-210 242-407 (742)
177 PRK15467 ethanolamine utilizat 99.9 5.1E-21 1.1E-25 139.2 12.6 138 13-210 3-144 (158)
178 PRK12298 obgE GTPase CgtA; Rev 99.9 2E-20 4.4E-25 153.4 17.4 157 12-210 160-330 (390)
179 TIGR00475 selB selenocysteine- 99.9 1.2E-20 2.7E-25 162.1 16.8 156 12-210 1-163 (581)
180 PTZ00099 rab6; Provisional 99.9 1.6E-20 3.5E-25 138.8 15.1 130 35-210 4-139 (176)
181 PRK00089 era GTPase Era; Revie 99.9 1.3E-20 2.8E-25 150.2 15.7 154 10-210 4-168 (292)
182 cd04163 Era Era subfamily. Er 99.9 1.5E-20 3.3E-25 136.8 14.8 153 11-210 3-166 (168)
183 cd04165 GTPBP1_like GTPBP1-lik 99.9 3.9E-20 8.4E-25 141.6 17.0 179 13-211 1-221 (224)
184 TIGR00491 aIF-2 translation in 99.9 5E-20 1.1E-24 157.7 18.8 112 10-130 3-135 (590)
185 PRK09554 feoB ferrous iron tra 99.9 2.6E-20 5.7E-25 163.8 17.2 150 10-210 2-165 (772)
186 PRK00093 GTP-binding protein D 99.9 3.4E-20 7.3E-25 155.5 17.2 156 10-210 172-341 (435)
187 COG1159 Era GTPase [General fu 99.9 2.6E-20 5.6E-25 143.7 14.8 153 10-210 5-169 (298)
188 TIGR00437 feoB ferrous iron tr 99.8 1.4E-20 3E-25 162.0 14.0 142 18-210 1-152 (591)
189 COG2229 Predicted GTPase [Gene 99.8 8.7E-20 1.9E-24 131.0 15.5 155 7-209 6-174 (187)
190 PRK00093 GTP-binding protein D 99.8 5.7E-20 1.2E-24 154.2 16.8 146 12-210 2-159 (435)
191 TIGR01393 lepA GTP-binding pro 99.8 1.1E-19 2.4E-24 156.4 18.8 151 12-210 4-177 (595)
192 PRK09518 bifunctional cytidyla 99.8 5.9E-20 1.3E-24 161.8 17.4 156 10-210 449-618 (712)
193 TIGR03594 GTPase_EngA ribosome 99.8 1.1E-19 2.3E-24 152.3 16.7 145 13-210 1-157 (429)
194 PF10662 PduV-EutP: Ethanolami 99.8 1.2E-19 2.5E-24 127.5 13.1 137 12-210 2-143 (143)
195 COG0370 FeoB Fe2+ transport sy 99.8 7.6E-20 1.7E-24 154.6 14.1 150 10-210 2-161 (653)
196 cd04166 CysN_ATPS CysN_ATPS su 99.8 2.4E-19 5.1E-24 136.2 15.3 111 13-131 1-145 (208)
197 PRK12317 elongation factor 1-a 99.8 1.6E-19 3.5E-24 150.8 15.7 117 8-130 3-153 (425)
198 PF08477 Miro: Miro-like prote 99.8 7.7E-20 1.7E-24 126.7 11.2 109 13-127 1-119 (119)
199 cd01884 EF_Tu EF-Tu subfamily. 99.8 9.6E-19 2.1E-23 131.2 17.5 112 10-130 1-132 (195)
200 cd00880 Era_like Era (E. coli 99.8 4.1E-19 8.8E-24 128.1 15.0 150 16-210 1-161 (163)
201 COG1160 Predicted GTPases [Gen 99.8 4.3E-19 9.3E-24 144.1 16.4 156 10-210 177-348 (444)
202 COG0486 ThdF Predicted GTPase 99.8 2E-19 4.4E-24 146.3 14.5 148 9-210 215-373 (454)
203 TIGR03680 eif2g_arch translati 99.8 3.3E-19 7.2E-24 147.9 15.5 160 9-210 2-193 (406)
204 COG1160 Predicted GTPases [Gen 99.8 2.6E-19 5.6E-24 145.4 14.2 147 12-210 4-162 (444)
205 PRK05433 GTP-binding protein L 99.8 7.2E-19 1.6E-23 151.5 17.8 152 11-210 7-181 (600)
206 PRK09518 bifunctional cytidyla 99.8 3.3E-19 7.1E-24 157.1 15.8 149 9-210 273-433 (712)
207 TIGR00483 EF-1_alpha translati 99.8 5.3E-19 1.1E-23 147.7 16.2 117 8-130 4-155 (426)
208 KOG4252|consensus 99.8 1.5E-20 3.2E-25 133.9 5.7 118 11-134 20-142 (246)
209 PRK10512 selenocysteinyl-tRNA- 99.8 8.8E-19 1.9E-23 151.2 17.5 155 12-210 1-163 (614)
210 cd01896 DRG The developmentall 99.8 6.1E-19 1.3E-23 135.9 14.7 90 12-102 1-100 (233)
211 cd04168 TetM_like Tet(M)-like 99.8 4.3E-19 9.4E-24 137.0 13.4 183 13-210 1-232 (237)
212 cd01883 EF1_alpha Eukaryotic e 99.8 1.1E-18 2.3E-23 133.6 15.3 113 13-131 1-152 (219)
213 PRK04004 translation initiatio 99.8 1.7E-18 3.6E-23 148.8 18.1 113 8-129 3-136 (586)
214 PRK04000 translation initiatio 99.8 1.2E-18 2.6E-23 144.5 16.0 164 5-210 3-198 (411)
215 TIGR01394 TypA_BipA GTP-bindin 99.8 3.3E-18 7.1E-23 147.1 17.8 157 13-210 3-188 (594)
216 cd01876 YihA_EngB The YihA (En 99.8 7.9E-18 1.7E-22 122.8 16.6 152 13-211 1-169 (170)
217 PRK10218 GTP-binding protein; 99.8 5.4E-18 1.2E-22 145.7 17.7 115 11-134 5-138 (607)
218 COG0218 Predicted GTPase [Gene 99.8 2.6E-17 5.7E-22 120.7 18.4 157 9-210 22-194 (200)
219 KOG1489|consensus 99.8 3.6E-18 7.8E-23 132.3 13.6 154 12-210 197-364 (366)
220 PRK12736 elongation factor Tu; 99.8 1E-17 2.2E-22 138.5 16.8 115 7-130 8-142 (394)
221 cd04169 RF3 RF3 subfamily. Pe 99.8 1.9E-17 4.1E-22 129.9 17.2 124 12-145 3-151 (267)
222 COG2262 HflX GTPases [General 99.8 9.1E-18 2E-22 134.6 15.5 151 9-210 190-353 (411)
223 cd04170 EF-G_bact Elongation f 99.8 4.8E-17 1E-21 128.1 18.8 123 13-145 1-144 (268)
224 KOG1423|consensus 99.8 7.6E-18 1.7E-22 129.9 13.5 178 9-210 70-268 (379)
225 COG1084 Predicted GTPase [Gene 99.8 2.5E-17 5.4E-22 128.5 15.6 126 10-140 167-304 (346)
226 COG0532 InfB Translation initi 99.8 1.6E-17 3.4E-22 137.1 15.2 158 9-209 3-166 (509)
227 cd01886 EF-G Elongation factor 99.8 9.2E-17 2E-21 126.2 18.7 124 13-146 1-145 (270)
228 PRK12735 elongation factor Tu; 99.8 2.8E-17 6E-22 136.0 16.3 115 7-130 8-142 (396)
229 CHL00071 tufA elongation facto 99.8 6.3E-17 1.4E-21 134.4 16.6 116 7-131 8-143 (409)
230 PRK05124 cysN sulfate adenylyl 99.8 7.8E-17 1.7E-21 135.8 17.3 116 7-130 23-174 (474)
231 TIGR02034 CysN sulfate adenyly 99.7 3.6E-17 7.7E-22 135.7 14.3 112 12-131 1-148 (406)
232 PLN03126 Elongation factor Tu; 99.7 1.1E-16 2.4E-21 134.5 17.1 114 8-130 78-211 (478)
233 TIGR00485 EF-Tu translation el 99.7 1.2E-16 2.6E-21 132.3 16.2 116 7-131 8-143 (394)
234 PTZ00141 elongation factor 1- 99.7 1.6E-16 3.5E-21 132.9 17.1 117 7-130 3-159 (446)
235 cd04167 Snu114p Snu114p subfam 99.7 2.1E-16 4.5E-21 120.5 16.1 108 13-129 2-136 (213)
236 PRK00741 prfC peptide chain re 99.7 2E-16 4.3E-21 134.5 17.6 128 9-146 8-160 (526)
237 PRK00049 elongation factor Tu; 99.7 2.1E-16 4.6E-21 130.7 15.9 115 7-130 8-142 (396)
238 PLN00043 elongation factor 1-a 99.7 2.8E-16 6.2E-21 131.4 16.5 116 7-129 3-158 (447)
239 KOG3883|consensus 99.7 1.1E-15 2.3E-20 106.5 16.0 124 9-135 7-137 (198)
240 PRK05506 bifunctional sulfate 99.7 1.6E-16 3.5E-21 138.6 15.0 116 7-130 20-171 (632)
241 KOG1145|consensus 99.7 3E-16 6.4E-21 129.4 15.4 158 9-209 151-312 (683)
242 PTZ00327 eukaryotic translatio 99.7 4.2E-16 9.1E-21 130.2 15.8 160 8-209 31-229 (460)
243 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 1.5E-16 3.2E-21 121.5 11.6 132 13-146 1-141 (232)
244 PRK13351 elongation factor G; 99.7 4.7E-16 1E-20 137.0 16.5 128 9-146 6-154 (687)
245 PLN03127 Elongation factor Tu; 99.7 1.3E-15 2.7E-20 127.4 16.7 114 8-130 58-191 (447)
246 COG5256 TEF1 Translation elong 99.7 3.6E-16 7.9E-21 125.4 12.6 167 7-207 3-208 (428)
247 TIGR00484 EF-G translation elo 99.7 2E-15 4.3E-20 132.9 18.5 126 11-146 10-156 (689)
248 TIGR00503 prfC peptide chain r 99.7 1.5E-15 3.3E-20 129.2 17.2 128 9-146 9-161 (527)
249 KOG1707|consensus 99.7 2.1E-16 4.6E-21 131.0 11.5 126 7-134 5-133 (625)
250 COG0536 Obg Predicted GTPase [ 99.7 4.2E-16 9.2E-21 122.2 12.1 153 13-210 161-330 (369)
251 PF01926 MMR_HSR1: 50S ribosom 99.7 1.5E-15 3.2E-20 104.8 13.5 103 13-125 1-116 (116)
252 cd04104 p47_IIGP_like p47 (47- 99.7 2.3E-15 5.1E-20 113.3 14.9 110 11-130 1-121 (197)
253 cd01899 Ygr210 Ygr210 subfamil 99.7 2.2E-15 4.8E-20 120.6 15.0 76 14-90 1-110 (318)
254 cd01885 EF2 EF2 (for archaea a 99.7 1.7E-15 3.7E-20 115.6 13.5 108 13-129 2-138 (222)
255 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 6.7E-15 1.4E-19 110.8 15.9 118 12-133 1-133 (196)
256 PRK12739 elongation factor G; 99.7 9.1E-15 2E-19 128.8 18.3 127 10-146 7-154 (691)
257 PRK00007 elongation factor G; 99.7 1.4E-14 3E-19 127.6 18.8 127 11-147 10-157 (693)
258 KOG0462|consensus 99.6 4.6E-15 1E-19 122.4 14.3 152 11-210 60-232 (650)
259 KOG0096|consensus 99.6 3.3E-16 7.2E-21 112.8 6.7 153 10-210 9-166 (216)
260 smart00275 G_alpha G protein a 99.6 1.7E-14 3.7E-19 116.9 17.4 86 41-129 170-264 (342)
261 cd00066 G-alpha G protein alph 99.6 1.3E-14 2.9E-19 116.6 15.7 86 41-129 147-241 (317)
262 KOG1673|consensus 99.6 8.9E-15 1.9E-19 102.2 11.3 158 10-208 19-181 (205)
263 COG3596 Predicted GTPase [Gene 99.6 1.3E-14 2.9E-19 110.9 12.9 164 8-210 36-219 (296)
264 COG0481 LepA Membrane GTPase L 99.6 1.1E-14 2.3E-19 118.5 12.5 151 12-210 10-183 (603)
265 KOG1191|consensus 99.6 9.1E-15 2E-19 119.4 11.3 122 9-131 266-404 (531)
266 KOG4423|consensus 99.6 8.3E-17 1.8E-21 115.6 -0.5 159 12-210 26-191 (229)
267 PRK14845 translation initiatio 99.6 5.4E-14 1.2E-18 126.5 16.9 163 22-210 472-670 (1049)
268 COG1163 DRG Predicted GTPase [ 99.6 2.3E-14 5E-19 111.8 12.7 93 9-101 61-162 (365)
269 PRK09866 hypothetical protein; 99.6 1.1E-13 2.4E-18 117.5 16.9 113 56-210 231-350 (741)
270 PRK12740 elongation factor G; 99.6 9.9E-14 2.2E-18 122.1 17.1 119 17-145 1-140 (668)
271 COG4917 EutP Ethanolamine util 99.6 4.7E-14 1E-18 95.2 10.2 139 12-210 2-143 (148)
272 KOG1532|consensus 99.6 3.9E-14 8.5E-19 108.1 10.5 183 8-209 16-260 (366)
273 PRK09602 translation-associate 99.5 1.7E-13 3.8E-18 112.8 14.4 78 12-90 2-113 (396)
274 PRK13768 GTPase; Provisional 99.5 7.6E-14 1.6E-18 108.9 10.4 139 56-210 98-244 (253)
275 KOG0082|consensus 99.5 1.1E-12 2.5E-17 104.8 17.2 86 41-129 181-275 (354)
276 cd01850 CDC_Septin CDC/Septin. 99.5 1.3E-13 2.7E-18 108.9 11.5 129 10-147 3-174 (276)
277 KOG1490|consensus 99.5 1.1E-13 2.3E-18 113.4 8.7 155 10-205 167-333 (620)
278 KOG1144|consensus 99.5 2.9E-13 6.2E-18 115.2 11.2 177 10-211 474-685 (1064)
279 PF03029 ATP_bind_1: Conserved 99.5 3.5E-13 7.7E-18 104.0 10.6 132 56-210 92-234 (238)
280 TIGR00991 3a0901s02IAP34 GTP-b 99.5 4.4E-12 9.6E-17 100.2 16.6 120 8-131 35-168 (313)
281 COG1217 TypA Predicted membran 99.5 6.3E-13 1.4E-17 108.2 11.7 121 12-141 6-145 (603)
282 cd01882 BMS1 Bms1. Bms1 is an 99.5 4.1E-12 8.8E-17 97.6 15.8 110 9-131 37-148 (225)
283 cd01853 Toc34_like Toc34-like 99.5 2E-12 4.3E-17 100.4 13.5 122 8-133 28-166 (249)
284 PTZ00258 GTP-binding protein; 99.5 3.9E-12 8.4E-17 104.0 15.5 85 5-90 15-126 (390)
285 PF04548 AIG1: AIG1 family; I 99.5 3.3E-12 7.1E-17 97.2 13.9 119 12-134 1-134 (212)
286 COG2895 CysN GTPases - Sulfate 99.5 1.4E-12 3E-17 102.9 12.1 116 8-133 3-156 (431)
287 PRK09435 membrane ATPase/prote 99.4 1.5E-12 3.3E-17 104.5 11.3 110 54-210 148-257 (332)
288 TIGR00490 aEF-2 translation el 99.4 1.1E-12 2.3E-17 116.2 11.4 114 9-131 17-153 (720)
289 KOG0458|consensus 99.4 1.5E-12 3.2E-17 108.5 9.8 166 8-208 174-383 (603)
290 PTZ00416 elongation factor 2; 99.4 1.4E-11 3E-16 110.5 14.9 112 9-129 17-157 (836)
291 COG5257 GCD11 Translation init 99.4 3.6E-12 7.8E-17 99.5 9.4 160 9-210 8-199 (415)
292 PLN00116 translation elongatio 99.4 2.2E-11 4.7E-16 109.5 15.1 112 9-129 17-163 (843)
293 KOG0461|consensus 99.4 4.7E-11 1E-15 94.2 14.7 162 9-210 5-190 (522)
294 COG3276 SelB Selenocysteine-sp 99.4 1.3E-11 2.7E-16 100.3 11.9 153 13-211 2-160 (447)
295 TIGR00101 ureG urease accessor 99.3 2.8E-11 6E-16 91.1 12.7 99 56-210 93-193 (199)
296 COG5258 GTPBP1 GTPase [General 99.3 4E-11 8.6E-16 95.8 13.1 181 9-210 115-336 (527)
297 TIGR00750 lao LAO/AO transport 99.3 2.9E-11 6.3E-16 96.7 11.9 110 54-210 126-235 (300)
298 KOG3886|consensus 99.3 1E-11 2.2E-16 92.7 8.5 127 10-140 3-140 (295)
299 PRK07560 elongation factor EF- 99.3 8E-11 1.7E-15 104.6 14.1 113 10-131 19-154 (731)
300 KOG1143|consensus 99.3 1.7E-11 3.8E-16 97.5 8.8 178 11-209 167-384 (591)
301 PF05049 IIGP: Interferon-indu 99.3 3.1E-11 6.6E-16 97.9 10.4 109 8-128 32-153 (376)
302 PF00503 G-alpha: G-protein al 99.3 2.6E-11 5.6E-16 100.5 9.6 84 43-129 223-316 (389)
303 COG4108 PrfC Peptide chain rel 99.3 5.1E-11 1.1E-15 96.6 10.9 129 9-147 10-163 (528)
304 KOG0410|consensus 99.3 2E-11 4.3E-16 95.5 7.6 117 8-130 175-308 (410)
305 COG0050 TufB GTPases - transla 99.2 1.3E-10 2.9E-15 89.8 11.5 119 7-134 8-146 (394)
306 TIGR00157 ribosome small subun 99.2 3.1E-11 6.8E-16 93.7 7.9 97 66-210 24-120 (245)
307 TIGR00073 hypB hydrogenase acc 99.2 9.2E-11 2E-15 89.0 9.5 25 10-34 21-45 (207)
308 PF00350 Dynamin_N: Dynamin fa 99.2 2.2E-10 4.7E-15 83.9 11.2 64 56-126 102-168 (168)
309 COG0480 FusA Translation elong 99.2 2.7E-10 5.8E-15 99.4 13.0 116 9-133 8-145 (697)
310 TIGR02836 spore_IV_A stage IV 99.2 8.7E-10 1.9E-14 89.8 14.5 117 6-128 12-192 (492)
311 PF00735 Septin: Septin; Inte 99.2 6E-10 1.3E-14 88.0 12.1 127 11-146 4-172 (281)
312 KOG0463|consensus 99.1 1.6E-10 3.4E-15 92.3 7.9 178 11-209 133-354 (641)
313 PRK09601 GTP-binding protein Y 99.1 1.1E-09 2.3E-14 88.9 12.1 78 12-90 3-107 (364)
314 cd01900 YchF YchF subfamily. 99.1 7.2E-10 1.6E-14 87.0 10.6 76 14-90 1-103 (274)
315 PF03308 ArgK: ArgK protein; 99.1 3E-10 6.5E-15 87.1 8.2 152 9-210 27-227 (266)
316 smart00010 small_GTPase Small 99.1 5E-10 1.1E-14 77.5 8.5 89 12-130 1-91 (124)
317 KOG3905|consensus 99.1 1.3E-08 2.8E-13 80.1 16.6 90 10-102 51-150 (473)
318 TIGR00993 3a0901s04IAP86 chlor 99.1 3.7E-09 8E-14 90.7 14.3 117 11-131 118-251 (763)
319 smart00053 DYNc Dynamin, GTPas 99.1 3.7E-09 8.1E-14 81.4 13.1 26 10-35 25-50 (240)
320 COG1703 ArgK Putative periplas 99.1 9.5E-09 2.1E-13 80.1 14.8 154 9-210 49-251 (323)
321 PRK10463 hydrogenase nickel in 99.1 5.5E-10 1.2E-14 87.8 8.0 26 9-34 102-127 (290)
322 COG0378 HypB Ni2+-binding GTPa 99.1 6.5E-10 1.4E-14 81.5 7.6 142 12-210 14-198 (202)
323 KOG2486|consensus 99.1 1.3E-10 2.8E-15 89.3 3.9 114 8-131 133-263 (320)
324 KOG0460|consensus 99.0 2.1E-09 4.6E-14 84.8 10.1 120 7-134 50-188 (449)
325 KOG0085|consensus 99.0 2.9E-10 6.2E-15 85.3 2.5 88 41-131 185-281 (359)
326 cd01855 YqeH YqeH. YqeH is an 99.0 3.3E-09 7.1E-14 79.4 8.2 99 68-210 24-122 (190)
327 cd01859 MJ1464 MJ1464. This f 99.0 2.8E-09 6E-14 77.2 7.3 89 72-210 5-93 (156)
328 PF05783 DLIC: Dynein light in 98.9 6.7E-08 1.4E-12 81.3 15.9 88 9-99 23-120 (472)
329 KOG0468|consensus 98.9 7.5E-09 1.6E-13 88.0 8.3 112 9-129 126-262 (971)
330 KOG0099|consensus 98.9 9.9E-09 2.1E-13 78.4 8.2 79 49-130 196-283 (379)
331 cd01858 NGP_1 NGP-1. Autoanti 98.9 6.5E-09 1.4E-13 75.4 7.0 55 10-65 101-157 (157)
332 COG0012 Predicted GTPase, prob 98.8 1.8E-08 3.9E-13 81.0 8.6 79 11-90 2-108 (372)
333 cd04178 Nucleostemin_like Nucl 98.8 1.1E-08 2.3E-13 75.3 6.8 55 10-65 116-172 (172)
334 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.5E-08 3.3E-13 72.1 7.4 54 11-65 83-138 (141)
335 COG5019 CDC3 Septin family pro 98.8 1.1E-07 2.4E-12 76.1 12.8 130 9-147 21-193 (373)
336 cd01858 NGP_1 NGP-1. Autoanti 98.8 1.4E-08 2.9E-13 73.7 7.0 87 77-210 6-92 (157)
337 PRK12289 GTPase RsgA; Reviewed 98.8 1.8E-08 3.9E-13 82.0 8.3 90 73-210 83-172 (352)
338 KOG3887|consensus 98.8 2E-07 4.3E-12 70.7 12.6 129 11-142 27-161 (347)
339 PRK00098 GTPase RsgA; Reviewed 98.8 3.9E-08 8.4E-13 78.7 8.5 86 77-209 78-163 (298)
340 KOG1491|consensus 98.8 3.4E-08 7.5E-13 78.1 7.8 85 5-90 14-125 (391)
341 KOG1486|consensus 98.8 1.6E-07 3.4E-12 71.6 10.9 87 8-94 59-154 (364)
342 KOG1954|consensus 98.7 1.9E-07 4.1E-12 74.8 11.2 116 10-133 57-228 (532)
343 cd01849 YlqF_related_GTPase Yl 98.7 5.6E-08 1.2E-12 70.3 7.5 80 81-209 1-81 (155)
344 cd01856 YlqF YlqF. Proteins o 98.7 6.2E-08 1.4E-12 71.2 7.7 96 62-210 2-98 (171)
345 KOG2655|consensus 98.7 2.9E-07 6.3E-12 74.1 11.5 129 10-146 20-188 (366)
346 cd01856 YlqF YlqF. Proteins o 98.7 6.8E-08 1.5E-12 71.1 7.3 56 9-65 113-170 (171)
347 cd01855 YqeH YqeH. YqeH is an 98.7 3.8E-08 8.2E-13 73.6 5.9 55 10-65 126-190 (190)
348 cd01859 MJ1464 MJ1464. This f 98.7 8E-08 1.7E-12 69.5 7.4 55 10-65 100-156 (156)
349 PRK09563 rbgA GTPase YlqF; Rev 98.7 7.2E-08 1.6E-12 76.7 7.4 57 9-66 119-177 (287)
350 TIGR03596 GTPase_YlqF ribosome 98.7 7E-08 1.5E-12 76.4 6.9 56 9-65 116-173 (276)
351 KOG0459|consensus 98.7 3.5E-08 7.6E-13 79.6 5.0 166 6-205 74-278 (501)
352 TIGR00092 GTP-binding protein 98.6 3.8E-07 8.2E-12 74.3 10.9 78 12-90 3-108 (368)
353 cd01854 YjeQ_engC YjeQ/EngC. 98.6 1.5E-07 3.3E-12 74.9 8.3 86 76-209 75-160 (287)
354 KOG0467|consensus 98.6 9.1E-07 2E-11 76.6 13.2 110 10-128 8-136 (887)
355 TIGR03597 GTPase_YqeH ribosome 98.6 2.4E-07 5.2E-12 76.0 9.4 99 65-210 50-150 (360)
356 COG1161 Predicted GTPases [Gen 98.6 9E-08 2E-12 77.3 6.2 55 10-65 131-187 (322)
357 TIGR03596 GTPase_YlqF ribosome 98.6 2.2E-07 4.7E-12 73.6 8.1 96 62-210 4-100 (276)
358 PRK12288 GTPase RsgA; Reviewed 98.6 4.8E-07 1E-11 73.7 9.9 87 78-210 119-205 (347)
359 KOG0705|consensus 98.6 1.6E-07 3.5E-12 78.4 7.1 115 5-128 24-141 (749)
360 KOG0448|consensus 98.6 1.7E-06 3.7E-11 74.2 13.2 116 6-131 104-276 (749)
361 cd01849 YlqF_related_GTPase Yl 98.6 1.8E-07 3.9E-12 67.7 6.5 56 9-65 98-155 (155)
362 KOG0466|consensus 98.6 4.9E-08 1.1E-12 76.3 3.6 157 10-210 37-238 (466)
363 KOG1707|consensus 98.6 6.1E-07 1.3E-11 75.6 10.2 115 9-132 423-542 (625)
364 COG5192 BMS1 GTP-binding prote 98.6 9E-07 2E-11 74.6 11.0 114 9-133 67-180 (1077)
365 KOG1547|consensus 98.5 1.4E-06 3.1E-11 66.0 10.6 128 10-146 45-214 (336)
366 KOG0447|consensus 98.5 5.8E-06 1.3E-10 69.6 14.8 115 10-131 307-494 (980)
367 cd01851 GBP Guanylate-binding 98.5 3.8E-06 8.2E-11 64.5 13.0 86 9-94 5-106 (224)
368 PRK14974 cell division protein 98.5 2.6E-06 5.5E-11 69.0 11.1 68 55-132 223-295 (336)
369 cd03112 CobW_like The function 98.4 1.7E-06 3.7E-11 62.8 8.7 63 56-128 88-158 (158)
370 PF03193 DUF258: Protein of un 98.4 3.6E-07 7.8E-12 66.0 4.9 57 12-69 36-101 (161)
371 PRK10416 signal recognition pa 98.4 4.5E-06 9.7E-11 67.3 11.8 24 10-33 113-136 (318)
372 PRK09563 rbgA GTPase YlqF; Rev 98.4 8.5E-07 1.8E-11 70.6 7.2 96 62-210 7-103 (287)
373 PRK12288 GTPase RsgA; Reviewed 98.4 5.6E-07 1.2E-11 73.3 6.0 56 13-69 207-271 (347)
374 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 1.5E-06 3.3E-11 61.8 7.0 49 75-130 7-56 (141)
375 PRK12289 GTPase RsgA; Reviewed 98.4 8.9E-07 1.9E-11 72.2 6.0 55 13-68 174-237 (352)
376 KOG0465|consensus 98.3 7.2E-07 1.6E-11 75.5 5.2 119 11-138 39-178 (721)
377 TIGR00064 ftsY signal recognit 98.3 1.3E-05 2.8E-10 63.3 12.0 68 55-132 155-233 (272)
378 TIGR03597 GTPase_YqeH ribosome 98.3 1.2E-06 2.5E-11 72.0 6.3 126 11-146 154-296 (360)
379 PRK13796 GTPase YqeH; Provisio 98.3 1.5E-06 3.2E-11 71.5 6.4 55 11-66 160-221 (365)
380 KOG0464|consensus 98.3 3.4E-07 7.5E-12 74.4 2.5 112 12-132 38-170 (753)
381 TIGR00157 ribosome small subun 98.3 1.5E-06 3.3E-11 67.6 5.9 56 12-69 121-185 (245)
382 PF00448 SRP54: SRP54-type pro 98.3 1.1E-05 2.4E-10 60.6 10.3 67 55-131 84-155 (196)
383 TIGR03348 VI_IcmF type VI secr 98.3 4.8E-06 1E-10 77.9 9.8 111 13-129 113-256 (1169)
384 TIGR01425 SRP54_euk signal rec 98.2 2.2E-05 4.8E-10 65.4 12.0 109 11-129 100-252 (429)
385 KOG1534|consensus 98.2 5.1E-06 1.1E-10 61.9 7.3 23 11-33 3-25 (273)
386 KOG1424|consensus 98.2 1.7E-06 3.8E-11 72.0 4.6 54 11-65 314-369 (562)
387 PRK13796 GTPase YqeH; Provisio 98.2 1.8E-05 3.9E-10 65.2 10.5 97 67-210 58-156 (365)
388 COG1618 Predicted nucleotide k 98.2 7.3E-05 1.6E-09 53.6 11.8 25 9-33 3-27 (179)
389 KOG1487|consensus 98.1 9.6E-06 2.1E-10 62.3 6.8 86 11-96 59-153 (358)
390 COG1162 Predicted GTPases [Gen 98.1 3.8E-06 8.2E-11 66.2 4.3 56 13-69 166-230 (301)
391 cd01854 YjeQ_engC YjeQ/EngC. 98.1 9.7E-06 2.1E-10 64.6 6.1 57 12-69 162-227 (287)
392 PRK00098 GTPase RsgA; Reviewed 98.1 1.2E-05 2.6E-10 64.4 6.6 57 11-68 164-229 (298)
393 PF09547 Spore_IV_A: Stage IV 98.0 0.00019 4.1E-09 59.2 12.6 135 6-146 12-209 (492)
394 PRK01889 GTPase RsgA; Reviewed 98.0 4.9E-05 1.1E-09 62.4 9.4 84 77-209 110-193 (356)
395 PRK14722 flhF flagellar biosyn 98.0 0.0001 2.2E-09 60.6 11.1 120 10-130 136-295 (374)
396 COG0523 Putative GTPases (G3E 97.9 9.1E-05 2E-09 59.7 9.4 120 14-142 4-171 (323)
397 cd03115 SRP The signal recogni 97.9 0.00031 6.8E-09 51.6 11.4 68 55-132 83-155 (173)
398 PRK11889 flhF flagellar biosyn 97.9 7.1E-05 1.5E-09 61.6 8.4 23 11-33 241-263 (436)
399 PF02492 cobW: CobW/HypB/UreG, 97.9 0.00016 3.4E-09 53.5 9.6 66 56-132 86-157 (178)
400 KOG2484|consensus 97.9 1.3E-05 2.9E-10 64.9 3.5 56 9-65 250-307 (435)
401 COG1162 Predicted GTPases [Gen 97.8 0.00019 4E-09 56.8 9.6 86 78-209 78-163 (301)
402 PRK00771 signal recognition pa 97.8 0.0001 2.2E-09 61.9 8.4 24 10-33 94-117 (437)
403 PRK14721 flhF flagellar biosyn 97.8 7.6E-05 1.6E-09 62.2 7.3 24 10-33 190-213 (420)
404 PRK11537 putative GTP-binding 97.8 0.0002 4.4E-09 57.8 9.4 23 12-34 5-27 (318)
405 COG1419 FlhF Flagellar GTP-bin 97.8 0.00027 5.8E-09 58.1 10.0 25 10-34 202-226 (407)
406 KOG0780|consensus 97.8 5.6E-05 1.2E-09 61.3 6.0 94 8-101 98-235 (483)
407 KOG2485|consensus 97.8 4.4E-05 9.4E-10 60.2 5.2 58 8-65 140-206 (335)
408 KOG3859|consensus 97.8 0.00015 3.2E-09 56.5 7.9 127 11-145 42-205 (406)
409 KOG1533|consensus 97.7 0.00013 2.9E-09 55.3 7.0 69 56-132 98-179 (290)
410 PRK12727 flagellar biosynthesi 97.7 0.00044 9.4E-09 59.1 10.7 24 10-33 349-372 (559)
411 PRK10867 signal recognition pa 97.7 0.0003 6.4E-09 59.0 9.4 22 11-32 100-121 (433)
412 PRK06995 flhF flagellar biosyn 97.7 0.00013 2.8E-09 61.9 7.3 23 11-33 256-278 (484)
413 TIGR02475 CobW cobalamin biosy 97.7 0.0003 6.5E-09 57.4 9.2 22 13-34 6-27 (341)
414 COG3523 IcmF Type VI protein s 97.7 0.00014 3E-09 67.3 7.8 112 14-130 128-270 (1188)
415 PRK12724 flagellar biosynthesi 97.7 0.00045 9.9E-09 57.4 9.9 23 11-33 223-245 (432)
416 PRK14723 flhF flagellar biosyn 97.7 0.00037 8E-09 62.0 9.6 23 11-33 185-207 (767)
417 TIGR00959 ffh signal recogniti 97.7 0.00044 9.5E-09 58.0 9.6 22 11-32 99-120 (428)
418 PRK12726 flagellar biosynthesi 97.6 0.0003 6.4E-09 57.8 8.0 24 10-33 205-228 (407)
419 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.00088 1.9E-08 43.6 9.0 69 14-91 2-70 (99)
420 PRK12723 flagellar biosynthesi 97.6 0.001 2.2E-08 55.1 10.8 23 11-33 174-196 (388)
421 PF06858 NOG1: Nucleolar GTP-b 97.6 0.00027 5.9E-09 41.5 5.0 44 80-127 14-58 (58)
422 KOG2423|consensus 97.5 0.00012 2.5E-09 59.7 4.4 88 8-99 304-394 (572)
423 PRK13695 putative NTPase; Prov 97.5 0.0013 2.8E-08 48.4 9.5 22 12-33 1-22 (174)
424 PRK05703 flhF flagellar biosyn 97.5 0.00067 1.5E-08 57.0 8.8 23 11-33 221-243 (424)
425 PF03266 NTPase_1: NTPase; In 97.5 0.00022 4.8E-09 52.2 5.1 21 13-33 1-21 (168)
426 PF13207 AAA_17: AAA domain; P 97.5 0.0001 2.3E-09 50.6 3.2 22 13-34 1-22 (121)
427 KOG2743|consensus 97.5 0.00057 1.2E-08 53.8 7.4 123 14-142 60-237 (391)
428 PRK10751 molybdopterin-guanine 97.5 0.00055 1.2E-08 50.2 7.0 65 11-86 6-70 (173)
429 cd04178 Nucleostemin_like Nucl 97.5 0.0003 6.5E-09 51.7 5.6 43 81-131 1-45 (172)
430 KOG0469|consensus 97.5 0.00029 6.3E-09 59.1 5.8 109 12-129 20-163 (842)
431 COG0541 Ffh Signal recognition 97.4 0.00046 1E-08 57.0 6.8 92 8-99 97-232 (451)
432 COG3640 CooC CO dehydrogenase 97.4 0.0022 4.8E-08 48.9 9.9 63 56-129 135-198 (255)
433 PRK06731 flhF flagellar biosyn 97.4 0.00087 1.9E-08 52.8 7.9 24 10-33 74-97 (270)
434 PF13555 AAA_29: P-loop contai 97.3 0.00023 5.1E-09 42.8 3.0 21 13-33 25-45 (62)
435 PRK08118 topology modulation p 97.3 0.00019 4.1E-09 52.5 3.1 23 12-34 2-24 (167)
436 cd03222 ABC_RNaseL_inhibitor T 97.3 0.009 1.9E-07 44.1 11.9 27 9-35 23-49 (177)
437 COG0563 Adk Adenylate kinase a 97.3 0.00022 4.7E-09 52.8 3.2 23 12-34 1-23 (178)
438 cd03116 MobB Molybdenum is an 97.3 0.0004 8.7E-09 50.4 4.5 51 13-69 3-53 (159)
439 PRK07261 topology modulation p 97.3 0.00023 4.9E-09 52.3 3.3 23 12-34 1-23 (171)
440 COG1136 SalX ABC-type antimicr 97.3 0.00021 4.5E-09 54.5 3.0 23 13-35 33-55 (226)
441 cd02038 FleN-like FleN is a me 97.3 0.016 3.6E-07 40.9 12.4 100 15-128 4-109 (139)
442 COG4619 ABC-type uncharacteriz 97.2 0.0011 2.3E-08 48.2 6.0 50 10-70 28-77 (223)
443 cd02042 ParA ParA and ParB of 97.2 0.0072 1.6E-07 40.2 9.8 81 14-104 2-84 (104)
444 COG1116 TauB ABC-type nitrate/ 97.2 0.00029 6.2E-09 54.2 3.0 22 13-34 31-52 (248)
445 PF13671 AAA_33: AAA domain; P 97.2 0.00031 6.8E-09 49.7 3.1 20 14-33 2-21 (143)
446 COG1126 GlnQ ABC-type polar am 97.2 0.00034 7.3E-09 52.7 3.2 26 10-35 27-52 (240)
447 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.004 8.7E-08 44.3 8.5 68 10-85 25-94 (144)
448 KOG0066|consensus 97.2 0.0022 4.8E-08 53.4 7.9 76 11-86 613-729 (807)
449 PF00005 ABC_tran: ABC transpo 97.1 0.00039 8.4E-09 48.9 3.0 26 10-35 10-35 (137)
450 PF00437 T2SE: Type II/IV secr 97.1 0.00043 9.3E-09 54.6 3.6 25 9-33 125-149 (270)
451 PRK13833 conjugal transfer pro 97.1 0.001 2.3E-08 53.7 5.6 25 10-34 143-167 (323)
452 COG3840 ThiQ ABC-type thiamine 97.1 0.00044 9.5E-09 50.8 3.0 23 11-33 25-47 (231)
453 cd02019 NK Nucleoside/nucleoti 97.1 0.00054 1.2E-08 42.3 3.0 21 14-34 2-22 (69)
454 PRK13894 conjugal transfer ATP 97.1 0.0014 3E-08 53.0 5.9 26 9-34 146-171 (319)
455 COG1161 Predicted GTPases [Gen 97.1 0.0015 3.3E-08 52.9 6.0 63 60-133 15-78 (322)
456 PF13521 AAA_28: AAA domain; P 97.0 0.0004 8.8E-09 50.5 2.3 22 13-34 1-22 (163)
457 PF03205 MobB: Molybdopterin g 97.0 0.00062 1.4E-08 48.3 3.2 66 12-89 1-67 (140)
458 TIGR00235 udk uridine kinase. 97.0 0.00059 1.3E-08 51.7 3.3 25 9-33 4-28 (207)
459 PRK01889 GTPase RsgA; Reviewed 97.0 0.00092 2E-08 54.9 4.5 25 11-35 195-219 (356)
460 cd00071 GMPK Guanosine monopho 97.0 0.00061 1.3E-08 48.2 3.0 21 14-34 2-22 (137)
461 COG0552 FtsY Signal recognitio 97.0 0.004 8.7E-08 50.0 7.8 111 9-129 137-297 (340)
462 PRK05480 uridine/cytidine kina 97.0 0.00073 1.6E-08 51.2 3.5 27 8-34 3-29 (209)
463 PRK14530 adenylate kinase; Pro 97.0 0.00075 1.6E-08 51.4 3.5 23 11-33 3-25 (215)
464 PF05673 DUF815: Protein of un 97.0 0.0084 1.8E-07 46.3 9.1 25 9-33 50-74 (249)
465 smart00382 AAA ATPases associa 97.0 0.00088 1.9E-08 46.4 3.5 27 11-37 2-28 (148)
466 cd01130 VirB11-like_ATPase Typ 97.0 0.00056 1.2E-08 50.9 2.6 26 9-34 23-48 (186)
467 TIGR02322 phosphon_PhnN phosph 97.0 0.0007 1.5E-08 49.9 3.0 22 13-34 3-24 (179)
468 cd00820 PEPCK_HprK Phosphoenol 96.9 0.00079 1.7E-08 45.3 2.8 22 11-32 15-36 (107)
469 PRK06217 hypothetical protein; 96.9 0.00083 1.8E-08 49.8 3.3 23 12-34 2-24 (183)
470 PRK10078 ribose 1,5-bisphospho 96.9 0.00085 1.9E-08 49.9 3.3 23 12-34 3-25 (186)
471 KOG4273|consensus 96.9 0.0037 7.9E-08 48.2 6.6 114 11-132 4-125 (418)
472 cd03264 ABC_drug_resistance_li 96.9 0.00089 1.9E-08 50.8 3.3 23 11-34 26-48 (211)
473 PF13238 AAA_18: AAA domain; P 96.9 0.00091 2E-08 46.2 3.1 21 14-34 1-21 (129)
474 PF00004 AAA: ATPase family as 96.9 0.00091 2E-08 46.4 3.0 20 14-33 1-20 (132)
475 TIGR03263 guanyl_kin guanylate 96.9 0.0009 1.9E-08 49.4 3.1 22 13-34 3-24 (180)
476 cd03238 ABC_UvrA The excision 96.9 0.0012 2.5E-08 48.8 3.5 24 9-32 19-42 (176)
477 COG3839 MalK ABC-type sugar tr 96.9 0.00086 1.9E-08 54.3 3.0 21 13-33 31-51 (338)
478 PRK03839 putative kinase; Prov 96.9 0.001 2.3E-08 49.1 3.2 22 13-34 2-23 (180)
479 PRK00300 gmk guanylate kinase; 96.8 0.0013 2.9E-08 49.5 3.8 26 9-34 3-28 (205)
480 COG1120 FepC ABC-type cobalami 96.8 0.00097 2.1E-08 52.0 3.0 23 11-33 28-50 (258)
481 COG4559 ABC-type hemin transpo 96.8 0.0013 2.9E-08 49.5 3.6 24 12-35 28-51 (259)
482 PRK08233 hypothetical protein; 96.8 0.0013 2.7E-08 48.5 3.5 24 11-34 3-26 (182)
483 PRK14738 gmk guanylate kinase; 96.8 0.0014 3E-08 49.6 3.8 26 9-34 11-36 (206)
484 cd02023 UMPK Uridine monophosp 96.8 0.001 2.2E-08 49.9 2.9 21 14-34 2-22 (198)
485 COG3638 ABC-type phosphate/pho 96.8 0.0011 2.3E-08 50.7 3.0 21 13-33 32-52 (258)
486 PRK13851 type IV secretion sys 96.8 0.00077 1.7E-08 55.0 2.4 27 8-34 159-185 (344)
487 KOG3347|consensus 96.8 0.0011 2.4E-08 47.0 2.7 26 8-33 4-29 (176)
488 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.8 0.0012 2.7E-08 50.2 3.3 26 10-35 29-54 (218)
489 PF04665 Pox_A32: Poxvirus A32 96.8 0.0014 3E-08 50.6 3.4 26 8-33 10-35 (241)
490 COG1117 PstB ABC-type phosphat 96.8 0.0011 2.3E-08 50.1 2.6 22 12-33 34-55 (253)
491 TIGR00960 3a0501s02 Type II (G 96.8 0.0013 2.8E-08 50.1 3.2 25 10-34 28-52 (216)
492 cd03226 ABC_cobalt_CbiO_domain 96.8 0.0013 2.8E-08 49.7 3.2 26 10-35 25-50 (205)
493 TIGR01166 cbiO cobalt transpor 96.8 0.0013 2.9E-08 49.0 3.2 25 11-35 18-42 (190)
494 TIGR01360 aden_kin_iso1 adenyl 96.8 0.0016 3.4E-08 48.3 3.6 23 11-33 3-25 (188)
495 cd03225 ABC_cobalt_CbiO_domain 96.8 0.0013 2.9E-08 49.8 3.3 26 10-35 26-51 (211)
496 cd03261 ABC_Org_Solvent_Resist 96.8 0.0013 2.8E-08 50.7 3.3 26 10-35 25-50 (235)
497 cd03111 CpaE_like This protein 96.8 0.04 8.6E-07 37.0 10.1 98 17-125 6-106 (106)
498 cd03265 ABC_DrrA DrrA is the A 96.7 0.0014 3.1E-08 50.0 3.3 25 10-34 25-49 (220)
499 cd03269 ABC_putative_ATPase Th 96.7 0.0015 3.2E-08 49.5 3.3 26 10-35 25-50 (210)
500 cd03292 ABC_FtsE_transporter F 96.7 0.0015 3.2E-08 49.6 3.3 25 10-34 26-50 (214)
No 1
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=100.00 E-value=7.5e-32 Score=203.79 Aligned_cols=195 Identities=37% Similarity=0.577 Sum_probs=162.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEec----CceEEEEECCCchhhhhhhHHHhhhcC-CEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYE----KKNIKIVDLPGEDRLRNKFFDQYKSSA-KGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~----~~~~~i~D~~G~~~~~~~~~~~~~~~~-d~ii~v 86 (211)
.+|+++|++|||||||+++|..+.+..+++++..+...+... +..+.+||+||+.+++. .+..+++.+ +++|+|
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~-~~~~~~~~~~~~vV~V 79 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRD-KLLETLKNSAKGIVFV 79 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHH-HHHHHHhccCCEEEEE
Confidence 368999999999999999999998888887777776665553 45899999999999988 577788888 999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|+++..+.+..+..++..++........++|+++++||+|+..+.....+.+.++++++.++..+..++.+.+.+....
T Consensus 80 vD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~ 159 (203)
T cd04105 80 VDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSK 159 (203)
T ss_pred EECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 99998645588888888887654333334599999999999999999999999999999999999888887766555544
Q ss_pred ccc-CCCCCCeeecCCCCcEEEEEEeeecCC-CccchHHHHHHHhh
Q psy1914 167 TFL-GNPDKDFEFSDLYNQVSFCDTTGLDSA-SEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~-~~~~~~~~~~~~~~~~~~~~~Sa~tg~-g~~~i~~l~~~i~~ 210 (211)
.++ +..++.|.|++++.++.|++||++.+. | ++.+.+||.+
T Consensus 160 ~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~---~~~~~~w~~~ 202 (203)
T cd04105 160 ESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGG---IDGWEEWIDE 202 (203)
T ss_pred cccccccCcceeeccCceeEEEEEeEEecCCCC---hHhHHHHHhh
Confidence 454 345678999999999999999999987 6 9999999976
No 2
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=100.00 E-value=2.1e-32 Score=202.36 Aligned_cols=163 Identities=29% Similarity=0.465 Sum_probs=141.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
.+++.||+++|+.||||||+++++..+......||.+.+...+++++..+.+||++|+..++. +|+.|+++++++|||+
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~-~w~~y~~~~~~iIfVv 89 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRP-LWKSYFQNADGIIFVV 89 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGG-GGGGGHTTESEEEEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccc-cceeeccccceeEEEE
Confidence 378899999999999999999999998888888999999999999999999999999999999 8999999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|+++++. +.++.+++..++.+....+ +|+++++||+|+.++....++.+.+. +.. ..
T Consensus 90 Dssd~~~-l~e~~~~L~~ll~~~~~~~--~piLIl~NK~D~~~~~~~~~i~~~l~--l~~---l~--------------- 146 (175)
T PF00025_consen 90 DSSDPER-LQEAKEELKELLNDPELKD--IPILILANKQDLPDAMSEEEIKEYLG--LEK---LK--------------- 146 (175)
T ss_dssp ETTGGGG-HHHHHHHHHHHHTSGGGTT--SEEEEEEESTTSTTSSTHHHHHHHTT--GGG---TT---------------
T ss_pred eccccee-ecccccchhhhcchhhccc--ceEEEEeccccccCcchhhHHHhhhh--hhh---cc---------------
Confidence 9999665 9999999999998876665 99999999999988777665554432 110 00
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-..++.++.|||++|+| +.|.++||.+
T Consensus 147 -------------~~~~~~v~~~sa~~g~G---v~e~l~WL~~ 173 (175)
T PF00025_consen 147 -------------NKRPWSVFSCSAKTGEG---VDEGLEWLIE 173 (175)
T ss_dssp -------------SSSCEEEEEEBTTTTBT---HHHHHHHHHH
T ss_pred -------------cCCceEEEeeeccCCcC---HHHHHHHHHh
Confidence 02458999999999999 9999999975
No 3
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=3.6e-32 Score=200.01 Aligned_cols=161 Identities=20% Similarity=0.364 Sum_probs=128.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
.+.+||+++|++|||||||+++|..+.+....||++.....+...+..+.+|||||+++++. ++..+++++|++++|+|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~a~~ii~v~D 85 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRP-LWRHYYTGTQGLIFVVD 85 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHH-HHHHHhccCCEEEEEEe
Confidence 56799999999999999999999988877666888887777777667999999999999988 78999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
++++.+ +.+...++..++......+ +|+++|+||+|+.+....+++.+.+. +..
T Consensus 86 ~t~~~s-~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~i~~~~~--~~~--------------------- 139 (168)
T cd04149 86 SADRDR-IDEARQELHRIINDREMRD--ALLLVFANKQDLPDAMKPHEIQEKLG--LTR--------------------- 139 (168)
T ss_pred CCchhh-HHHHHHHHHHHhcCHhhcC--CcEEEEEECcCCccCCCHHHHHHHcC--CCc---------------------
Confidence 999654 8888888888876543344 89999999999976544433332221 000
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....+.+++|||++|+| ++++++||.+
T Consensus 140 -----------~~~~~~~~~~~SAk~g~g---v~~~~~~l~~ 167 (168)
T cd04149 140 -----------IRDRNWYVQPSCATSGDG---LYEGLTWLSS 167 (168)
T ss_pred -----------cCCCcEEEEEeeCCCCCC---hHHHHHHHhc
Confidence 001236789999999999 9999999974
No 4
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=6.8e-32 Score=200.74 Aligned_cols=161 Identities=21% Similarity=0.401 Sum_probs=130.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
.++.+||+++|+++||||||++++..+.+....||++.+...+.+++..+.+||+||++.++. +|..+++++|++|+|+
T Consensus 14 ~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~-~~~~~~~~a~~iI~V~ 92 (181)
T PLN00223 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP-LWRHYFQNTQGLIFVV 92 (181)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHH-HHHHHhccCCEEEEEE
Confidence 356799999999999999999999988887666888888877787777999999999999998 7999999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++++++ +.++..++..++......+ +|+++|+||+|+.+.....++.+. +..
T Consensus 93 D~s~~~s-~~~~~~~l~~~l~~~~~~~--~piilv~NK~Dl~~~~~~~~~~~~----l~l-------------------- 145 (181)
T PLN00223 93 DSNDRDR-VVEARDELHRMLNEDELRD--AVLLVFANKQDLPNAMNAAEITDK----LGL-------------------- 145 (181)
T ss_pred eCCcHHH-HHHHHHHHHHHhcCHhhCC--CCEEEEEECCCCCCCCCHHHHHHH----hCc--------------------
Confidence 9999665 8888888888876544434 999999999999876654333322 210
Q ss_pred ccCCCCCCeeecCC-CCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDL-YNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~-~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+ .+.+.+++|||++|+| ++++++||.+
T Consensus 146 -----------~~~~~~~~~~~~~Sa~~g~g---v~e~~~~l~~ 175 (181)
T PLN00223 146 -----------HSLRQRHWYIQSTCATSGEG---LYEGLDWLSN 175 (181)
T ss_pred -----------cccCCCceEEEeccCCCCCC---HHHHHHHHHH
Confidence 000 2336678999999999 9999999975
No 5
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=5.8e-32 Score=197.19 Aligned_cols=158 Identities=23% Similarity=0.393 Sum_probs=125.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~ 91 (211)
+||+++|.+|||||||++++..+.+....||++.+...+.++...+.+||+||++++.. ++..+++++|++++|+|+++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~ad~~i~v~D~~~ 79 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP-LWRHYFQNTQGLIFVVDSND 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHH-HHHHHhcCCCEEEEEEeCCC
Confidence 58999999999999999999888887666888888777777777999999999999988 78999999999999999998
Q ss_pred chhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCC
Q psy1914 92 VQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGN 171 (211)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (211)
..+ +....+++..++....... .|+++++||+|+.+.....++...+. ++. .
T Consensus 80 ~~s-~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~i~~~~~--~~~---~-------------------- 131 (159)
T cd04150 80 RER-IGEAREELQRMLNEDELRD--AVLLVFANKQDLPNAMSAAEVTDKLG--LHS---L-------------------- 131 (159)
T ss_pred HHH-HHHHHHHHHHHHhcHHhcC--CCEEEEEECCCCCCCCCHHHHHHHhC--ccc---c--------------------
Confidence 655 8888888888876543334 89999999999976543322222211 000 0
Q ss_pred CCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 172 PDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.+.+++|||++|+| ++++++||.+
T Consensus 132 ---------~~~~~~~~~~Sak~g~g---v~~~~~~l~~ 158 (159)
T cd04150 132 ---------RNRNWYIQATCATSGDG---LYEGLDWLSN 158 (159)
T ss_pred ---------CCCCEEEEEeeCCCCCC---HHHHHHHHhc
Confidence 02336788999999999 9999999974
No 6
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=1.3e-31 Score=198.36 Aligned_cols=161 Identities=22% Similarity=0.381 Sum_probs=129.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
.+.+||+++|++|||||||++++..+.+....||++.....+.+++..+.+|||||+..++. ++..+++++|++|+|+|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~-~~~~~~~~ad~ii~v~D 89 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRP-LWRHYYTNTQGLIFVVD 89 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHH-HHHHHhCCCCEEEEEEE
Confidence 55799999999999999999999887776666888888777777777999999999999998 79999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
++++.+ +.+..+++..+++.....+ +|+++|+||+|+.+.....++.+. +.. ..
T Consensus 90 ~t~~~s-~~~~~~~l~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~i~~~----~~~-~~------------------ 143 (175)
T smart00177 90 SNDRDR-IDEAREELHRMLNEDELRD--AVILVFANKQDLPDAMKAAEITEK----LGL-HS------------------ 143 (175)
T ss_pred CCCHHH-HHHHHHHHHHHhhCHhhcC--CcEEEEEeCcCcccCCCHHHHHHH----hCc-cc------------------
Confidence 999665 8888899988876543334 899999999999765543332222 110 00
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-..+.+.++++||++|+| ++++++||.+
T Consensus 144 -----------~~~~~~~~~~~Sa~~g~g---v~e~~~~l~~ 171 (175)
T smart00177 144 -----------IRDRNWYIQPTCATSGDG---LYEGLTWLSN 171 (175)
T ss_pred -----------cCCCcEEEEEeeCCCCCC---HHHHHHHHHH
Confidence 002336788999999999 9999999975
No 7
>KOG0073|consensus
Probab=100.00 E-value=1e-31 Score=187.90 Aligned_cols=163 Identities=23% Similarity=0.383 Sum_probs=141.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
+.+++||+++|+.||||||++++|.+.......||.++++.++.+++..+++||.+|+..+++ +|.+||..+|++|+|+
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~-~W~nYfestdglIwvv 91 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRS-YWKNYFESTDGLIWVV 91 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHH-HHHHhhhccCeEEEEE
Confidence 456899999999999999999999998888888999999999999999999999999999999 9999999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++|+.. +++....+..++.....+. .|+++++||.|+.+.-+.+.+...+. +.. ..+
T Consensus 92 DssD~~r-~~e~~~~L~~lL~eerlaG--~~~Lvlank~dl~~~l~~~~i~~~~~--L~~--l~k--------------- 149 (185)
T KOG0073|consen 92 DSSDRMR-MQECKQELTELLVEERLAG--APLLVLANKQDLPGALSLEEISKALD--LEE--LAK--------------- 149 (185)
T ss_pred ECchHHH-HHHHHHHHHHHHhhhhhcC--CceEEEEecCcCccccCHHHHHHhhC--HHH--hcc---------------
Confidence 9999766 9999999999998877777 99999999999998877766554432 110 001
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++++.|||.||++ +.+-++||..
T Consensus 150 --------------s~~~~l~~cs~~tge~---l~~gidWL~~ 175 (185)
T KOG0073|consen 150 --------------SHHWRLVKCSAVTGED---LLEGIDWLCD 175 (185)
T ss_pred --------------ccCceEEEEecccccc---HHHHHHHHHH
Confidence 2338999999999999 9999999863
No 8
>KOG0070|consensus
Probab=100.00 E-value=3.3e-32 Score=194.96 Aligned_cols=163 Identities=23% Similarity=0.417 Sum_probs=145.7
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
..+++.+|+++|..++||||++++|-.+++..+.||+|+++..+++++..+.+||.+|++++++ +|.+|+++++++|||
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~-lW~~Y~~~t~~lIfV 91 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRP-LWKHYFQNTQGLIFV 91 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCccccc-chhhhccCCcEEEEE
Confidence 3578899999999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|++|.++ +.++.+.+..++.+..... .|+++++||.|++++.+..++.+.+.- . .+.
T Consensus 92 vDS~Dr~R-i~eak~eL~~~l~~~~l~~--~~llv~aNKqD~~~als~~ei~~~L~l--~-----------~l~------ 149 (181)
T KOG0070|consen 92 VDSSDRER-IEEAKEELHRMLAEPELRN--APLLVFANKQDLPGALSAAEITNKLGL--H-----------SLR------ 149 (181)
T ss_pred EeCCcHHH-HHHHHHHHHHHHcCcccCC--ceEEEEechhhccccCCHHHHHhHhhh--h-----------ccC------
Confidence 99999776 9999999999999877666 999999999999999988776665541 1 000
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++.+..|+|.+|+| +.|.++||.+
T Consensus 150 ---------------~~~w~iq~~~a~~G~G---L~egl~wl~~ 175 (181)
T KOG0070|consen 150 ---------------SRNWHIQSTCAISGEG---LYEGLDWLSN 175 (181)
T ss_pred ---------------CCCcEEeecccccccc---HHHHHHHHHH
Confidence 2458889999999999 9999999975
No 9
>KOG0071|consensus
Probab=99.98 E-value=9.7e-32 Score=183.35 Aligned_cols=165 Identities=21% Similarity=0.387 Sum_probs=148.3
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 5 KFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 5 ~~~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+-...++++|+++|..++||||++..|+.+....+.||+|+++.++++++..+++||.+|+...++ +|++|+.+..++|
T Consensus 11 k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRp-lWrhYy~gtqglI 89 (180)
T KOG0071|consen 11 KIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRP-LWRHYYTGTQGLI 89 (180)
T ss_pred HHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhH-HHHhhccCCceEE
Confidence 334567999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
||+|+.+.+. +++++++++++++++.+.. .|+++.+||.|++.++.+.++.+.++ +.. .
T Consensus 90 FV~Dsa~~dr-~eeAr~ELh~ii~~~em~~--~~~LvlANkQDlp~A~~pqei~d~le--Le~---~------------- 148 (180)
T KOG0071|consen 90 FVVDSADRDR-IEEARNELHRIINDREMRD--AIILILANKQDLPDAMKPQEIQDKLE--LER---I------------- 148 (180)
T ss_pred EEEeccchhh-HHHHHHHHHHHhCCHhhhc--ceEEEEecCcccccccCHHHHHHHhc--ccc---c-------------
Confidence 9999998755 9999999999999988877 99999999999999999998888765 110 0
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-.+++.+.+|||.+|+| +.|-+.||..
T Consensus 149 ----------------r~~~W~vqp~~a~~gdg---L~eglswlsn 175 (180)
T KOG0071|consen 149 ----------------RDRNWYVQPSCALSGDG---LKEGLSWLSN 175 (180)
T ss_pred ----------------cCCccEeeccccccchh---HHHHHHHHHh
Confidence 03458889999999999 9999999875
No 10
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.98 E-value=4.7e-31 Score=196.41 Aligned_cols=162 Identities=23% Similarity=0.395 Sum_probs=128.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
.++++||+++|++|||||||++++..+.+....||++.+...+..++..+.+|||||++.++. ++..+++++|++|+|+
T Consensus 14 ~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~ad~iI~v~ 92 (182)
T PTZ00133 14 GKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRP-LWRHYYQNTNGLIFVV 92 (182)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHH-HHHHHhcCCCEEEEEE
Confidence 356799999999999999999999888887766888888777777777999999999999998 7999999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++++.+ +.....++..++......+ +|+++|+||.|+.+.....++...+ .. ...
T Consensus 93 D~t~~~s-~~~~~~~l~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~i~~~l----~~-~~~---------------- 148 (182)
T PTZ00133 93 DSNDRER-IGDAREELERMLSEDELRD--AVLLVFANKQDLPNAMSTTEVTEKL----GL-HSV---------------- 148 (182)
T ss_pred eCCCHHH-HHHHHHHHHHHHhCHhhcC--CCEEEEEeCCCCCCCCCHHHHHHHh----CC-Ccc----------------
Confidence 9998665 8888888888876543334 8999999999997655443332222 10 000
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-...+.++++||++|+| ++++++||.+
T Consensus 149 -------------~~~~~~~~~~Sa~tg~g---v~e~~~~l~~ 175 (182)
T PTZ00133 149 -------------RQRNWYIQGCCATTAQG---LYEGLDWLSA 175 (182)
T ss_pred -------------cCCcEEEEeeeCCCCCC---HHHHHHHHHH
Confidence 01236778999999999 9999999975
No 11
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.98 E-value=7.4e-31 Score=193.84 Aligned_cols=162 Identities=23% Similarity=0.378 Sum_probs=127.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
+...+||+++|++|||||||++++.+..+....||++.....+.+++..+.+|||||++.++. ++..+++++|++++|+
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~-~~~~~~~~~d~~i~v~ 89 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRP-YWRNYFESTDALIWVV 89 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHH-HHHHHhCCCCEEEEEE
Confidence 356789999999999999999999988666556888877777888877999999999999888 7888999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++++.+ +.....++..++...... ++|+++|+||+|+.+.....++.+.+.. . . .
T Consensus 90 d~~~~~s-~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~--~--~-~---------------- 145 (173)
T cd04154 90 DSSDRLR-LDDCKRELKELLQEERLA--GATLLILANKQDLPGALSEEEIREALEL--D--K-I---------------- 145 (173)
T ss_pred ECCCHHH-HHHHHHHHHHHHhChhhc--CCCEEEEEECcccccCCCHHHHHHHhCc--c--c-c----------------
Confidence 9999654 777778888776543333 4999999999999765543333222210 0 0 0
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-...+++++|||++|+| ++++++||.+
T Consensus 146 -------------~~~~~~~~~~Sa~~g~g---i~~l~~~l~~ 172 (173)
T cd04154 146 -------------SSHHWRIQPCSAVTGEG---LLQGIDWLVD 172 (173)
T ss_pred -------------CCCceEEEeccCCCCcC---HHHHHHHHhc
Confidence 01337899999999999 9999999864
No 12
>KOG0084|consensus
Probab=99.98 E-value=3.1e-31 Score=191.30 Aligned_cols=155 Identities=25% Similarity=0.331 Sum_probs=127.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||+|+.|+..+.|++.+ .|+|.. ...++++++ .+++|||+||++|+. +..+||+++++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrt-it~syYR~ahGi 85 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRT-ITSSYYRGAHGI 85 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhh-hhHhhccCCCeE
Confidence 44579999999999999999999999998888 566654 455778887 899999999999999 899999999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHH-HHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKT-LLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|||+++.+ +|..+..|+.++.+... .++|.++|+||+|+.+.+..+.... .+..+++
T Consensus 86 i~vyDiT~~~-SF~~v~~Wi~Ei~~~~~---~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~---------------- 145 (205)
T KOG0084|consen 86 IFVYDITKQE-SFNNVKRWIQEIDRYAS---ENVPKLLVGNKCDLTEKRVVSTEEAQEFADELG---------------- 145 (205)
T ss_pred EEEEEcccHH-HhhhHHHHHHHhhhhcc---CCCCeEEEeeccccHhheecCHHHHHHHHHhcC----------------
Confidence 9999999954 59999999999876532 4489999999999998876543332 3332222
Q ss_pred cccccccCCCCCCeeecCCCCcEE-EEEEeeecCCCccchHHHHHHHh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVS-FCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
++ ++++|||++.+ +++.|.-|.
T Consensus 146 ----------------------~~~f~ETSAK~~~N---Ve~~F~~la 168 (205)
T KOG0084|consen 146 ----------------------IPIFLETSAKDSTN---VEDAFLTLA 168 (205)
T ss_pred ----------------------CcceeecccCCccC---HHHHHHHHH
Confidence 44 89999999999 999887664
No 13
>KOG0090|consensus
Probab=99.97 E-value=4.4e-31 Score=192.72 Aligned_cols=201 Identities=38% Similarity=0.605 Sum_probs=176.0
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhh--cCCEEE
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKS--SAKGIV 84 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--~~d~ii 84 (211)
++.....|+++|+.+||||+|+.+|..+....+++++.++.+.+.+++....++|.|||.+.+.++.+.+.. .+-+++
T Consensus 34 rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 34 RRSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred hhccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 344557899999999999999999999999999999999999999999999999999999999965444332 699999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
||+|+.........+.++++.++.+.......+|+++++||.|+..+...+.+++++++++..++..+.++......+..
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~ 193 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA 193 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 99999876666888999999998776444556999999999999999999999999999999999998865555566677
Q ss_pred cccccCCCCCCeeecCCC-CcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 165 NQTFLGNPDKDFEFSDLY-NQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
....++..+.+|.|++++ .++.|.++|+++| + ++++.+||.+.
T Consensus 194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~---i~~~~~wi~~~ 237 (238)
T KOG0090|consen 194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-E---IDQWESWIREA 237 (238)
T ss_pred ccccccccccccchhhcccceeEEeecccCcC-C---hHHHHHHHHHh
Confidence 888899999999999998 9999999999999 4 99999999863
No 14
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=1.5e-30 Score=191.62 Aligned_cols=158 Identities=22% Similarity=0.350 Sum_probs=125.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTV 92 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~ 92 (211)
||+++|++|||||||++++.+..+....||++.+...+++++..+.+|||||+..+.. .+..+++++|++++|+|++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~-~~~~~~~~ad~ii~V~D~s~~ 79 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRP-LWKHYYLNTQAVVFVVDSSHR 79 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcch-HHHHHhccCCEEEEEEeCCcH
Confidence 6899999999999999999998777666888888877888777999999999999888 688899999999999999996
Q ss_pred hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCC
Q psy1914 93 QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNP 172 (211)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (211)
.+ +.+...|+..++......+ .|+++|+||+|+.+....++..+.+. +...
T Consensus 80 ~s-~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~~~~~~~--~~~~------------------------ 130 (169)
T cd04158 80 DR-VSEAHSELAKLLTEKELRD--ALLLIFANKQDVAGALSVEEMTELLS--LHKL------------------------ 130 (169)
T ss_pred HH-HHHHHHHHHHHhcChhhCC--CCEEEEEeCcCcccCCCHHHHHHHhC--Cccc------------------------
Confidence 55 8888899888886543444 89999999999976544443332221 0000
Q ss_pred CCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 173 DKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+.+.+++|||++|.| ++++++||.+
T Consensus 131 -------~~~~~~~~~~~Sa~~g~g---v~~~f~~l~~ 158 (169)
T cd04158 131 -------CCGRSWYIQGCDARSGMG---LYEGLDWLSR 158 (169)
T ss_pred -------cCCCcEEEEeCcCCCCCC---HHHHHHHHHH
Confidence 001236788999999999 9999999975
No 15
>KOG0094|consensus
Probab=99.97 E-value=1e-30 Score=188.11 Aligned_cols=156 Identities=21% Similarity=0.315 Sum_probs=131.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE--EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+.+||+++|..+||||||++|++.+.|..+| +|+|..... +.+.+. .+++|||+||++|+. +.+.|++++.++|
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrs-lipsY~Rds~vav 99 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSSVAV 99 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhh-hhhhhccCCeEEE
Confidence 4589999999999999999999999998888 788876554 666666 899999999999999 8999999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHH-HHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVK-TLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|||.++..+ |+.+..|+.+.++.+.-.+ +-+++|+||.||.+.++....+ +...++++
T Consensus 100 iVyDit~~~S-fe~t~kWi~dv~~e~gs~~--viI~LVGnKtDL~dkrqvs~eEg~~kAkel~----------------- 159 (221)
T KOG0094|consen 100 IVYDITDRNS-FENTSKWIEDVRRERGSDD--VIIFLVGNKTDLSDKRQVSIEEGERKAKELN----------------- 159 (221)
T ss_pred EEEeccccch-HHHHHHHHHHHHhccCCCc--eEEEEEcccccccchhhhhHHHHHHHHHHhC-----------------
Confidence 9999999665 9999999999998755333 8899999999999887754333 23333443
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+.|.++||++|.| |.+++.-|..
T Consensus 160 ---------------------a~f~etsak~g~N---Vk~lFrrIaa 182 (221)
T KOG0094|consen 160 ---------------------AEFIETSAKAGEN---VKQLFRRIAA 182 (221)
T ss_pred ---------------------cEEEEecccCCCC---HHHHHHHHHH
Confidence 7899999999999 9999987653
No 16
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.97 E-value=1.9e-30 Score=191.83 Aligned_cols=161 Identities=22% Similarity=0.384 Sum_probs=128.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
.+..||+++|++|||||||++++..+.+....||.+.+...+.+++..+.+||+||++.+.. .+..+++++|++++|+|
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~d~vi~V~D 91 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRS-SWNTYYTNTDAVILVID 91 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHH-HHHHHhhcCCEEEEEEE
Confidence 35789999999999999999999998887777888888888888888999999999999988 68888999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
++++++ +....+++..+++.....+ +|+++++||+|+.+.....++.+.+. +. ..
T Consensus 92 ~s~~~~-~~~~~~~l~~~~~~~~~~~--~p~viv~NK~Dl~~~~~~~~i~~~l~--~~---~~----------------- 146 (174)
T cd04153 92 STDRER-LPLTKEELYKMLAHEDLRK--AVLLVLANKQDLKGAMTPAEISESLG--LT---SI----------------- 146 (174)
T ss_pred CCCHHH-HHHHHHHHHHHHhchhhcC--CCEEEEEECCCCCCCCCHHHHHHHhC--cc---cc-----------------
Confidence 998655 7777888888876544334 89999999999976444333222221 00 00
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++|||++|+| ++++++||.+
T Consensus 147 ------------~~~~~~~~~~SA~~g~g---i~e~~~~l~~ 173 (174)
T cd04153 147 ------------RDHTWHIQGCCALTGEG---LPEGLDWIAS 173 (174)
T ss_pred ------------cCCceEEEecccCCCCC---HHHHHHHHhc
Confidence 01236789999999999 9999999974
No 17
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.97 E-value=3.5e-30 Score=194.14 Aligned_cols=154 Identities=23% Similarity=0.374 Sum_probs=119.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+.|+++|..|||||||++++..+.|...+ +|++.. ...+.+++. .+.+|||+|+++++. ++..|++++|++|+|
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~-l~~~y~~~ad~iIlV 79 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS-ITSAYYRSAKGIILV 79 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHH-HHHHHhcCCCEEEEE
Confidence 46899999999999999999999997766 565544 345777774 789999999999998 799999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
||++++++ ++.+..|+..+.+. . ..++|+++|+||+|+...+.... ....+.+++
T Consensus 80 fDvtd~~S-f~~l~~w~~~i~~~-~--~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~-------------------- 135 (202)
T cd04120 80 YDITKKET-FDDLPKWMKMIDKY-A--SEDAELLLVGNKLDCETDREISRQQGEKFAQQI-------------------- 135 (202)
T ss_pred EECcCHHH-HHHHHHHHHHHHHh-C--CCCCcEEEEEECcccccccccCHHHHHHHHHhc--------------------
Confidence 99999665 88888877654332 2 23499999999999975444321 111121111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.+++|||++|+| |+++++||.+
T Consensus 136 -----------------~~~~~~etSAktg~g---V~e~F~~l~~ 160 (202)
T cd04120 136 -----------------TGMRFCEASAKDNFN---VDEIFLKLVD 160 (202)
T ss_pred -----------------CCCEEEEecCCCCCC---HHHHHHHHHH
Confidence 115789999999999 9999999874
No 18
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.97 E-value=6.2e-30 Score=187.92 Aligned_cols=160 Identities=26% Similarity=0.359 Sum_probs=127.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTV 92 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~ 92 (211)
+|+++|++|||||||++++.+.......||++.....+.+++..+.+||+||+..++. ++..+++++|++++|+|++++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~a~~ii~V~D~s~~ 79 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRG-IWVNYYAEAHGLVFVVDSSDD 79 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHH-HHHHHHcCCCEEEEEEECCch
Confidence 4899999999999999999977333445888888777888888999999999999998 799999999999999999996
Q ss_pred hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCC
Q psy1914 93 QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNP 172 (211)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (211)
.+ +..+..++..++......+ +|+++|+||+|+.+.+...++.+.+. +..+
T Consensus 80 ~s-~~~~~~~l~~l~~~~~~~~--~piliv~NK~Dl~~~~~~~~i~~~~~--l~~~------------------------ 130 (167)
T cd04161 80 DR-VQEVKEILRELLQHPRVSG--KPILVLANKQDKKNALLGADVIEYLS--LEKL------------------------ 130 (167)
T ss_pred hH-HHHHHHHHHHHHcCccccC--CcEEEEEeCCCCcCCCCHHHHHHhcC--cccc------------------------
Confidence 64 8888889888886544344 89999999999988776555444321 1100
Q ss_pred CCCeeecCCCCcEEEEEEeeecC------CCccchHHHHHHHhh
Q psy1914 173 DKDFEFSDLYNQVSFCDTTGLDS------ASEYDVEQLQDWMVT 210 (211)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~Sa~tg------~g~~~i~~l~~~i~~ 210 (211)
.++...++.+++|||++| .| +.+.++||.+
T Consensus 131 -----~~~~~~~~~~~~~Sa~~g~~~~~~~g---~~~~~~wl~~ 166 (167)
T cd04161 131 -----VNENKSLCHIEPCSAIEGLGKKIDPS---IVEGLRWLLA 166 (167)
T ss_pred -----cCCCCceEEEEEeEceeCCCCccccC---HHHHHHHHhc
Confidence 001123478899999998 89 9999999975
No 19
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=7.4e-30 Score=190.34 Aligned_cols=168 Identities=20% Similarity=0.296 Sum_probs=130.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
.++++|+++|++|||||||++++.++.+....||.++....+.+++..+.+||+||+..++. .+..+++++|++++|+|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~ad~ii~vvD 93 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARR-LWKDYFPEVNGIVYLVD 93 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHH-HHHHHhCCCCEEEEEEE
Confidence 66799999999999999999999998776556777777777888888999999999999888 78999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
++++.+ +.....++..+++.....+ +|+++|+||+|+....+.+++.+.+ +........+.
T Consensus 94 ~~~~~~-~~~~~~~l~~l~~~~~~~~--~piliv~NK~Dl~~~~~~~~i~~~l----~l~~~~~~~~~------------ 154 (184)
T smart00178 94 AYDKER-FAESKRELDALLSDEELAT--VPFLILGNKIDAPYAASEDELRYAL----GLTNTTGSKGK------------ 154 (184)
T ss_pred CCcHHH-HHHHHHHHHHHHcChhhcC--CCEEEEEeCccccCCCCHHHHHHHc----CCCcccccccc------------
Confidence 998655 7788888888776543344 8999999999997665555444333 21000000000
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.-.+.+.+++|||++|+| ++++++||.+
T Consensus 155 -----------~~~~~~~i~~~Sa~~~~g---~~~~~~wl~~ 182 (184)
T smart00178 155 -----------VGVRPLEVFMCSVVRRMG---YGEGFKWLSQ 182 (184)
T ss_pred -----------cCCceeEEEEeecccCCC---hHHHHHHHHh
Confidence 002347899999999999 9999999974
No 20
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.97 E-value=6.3e-30 Score=186.53 Aligned_cols=159 Identities=25% Similarity=0.407 Sum_probs=120.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcc-ccc-ccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKY-FES-CTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSS 90 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~-~~~-~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~ 90 (211)
+|+++|++|||||||+++|.+..+ ... .||++.....+..++..+.+|||||++.++. ++..+++++|++++|+|++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~ii~v~D~~ 79 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRG-LWEHYYKNIQGIIFVIDSS 79 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHH-HHHHHHccCCEEEEEEeCC
Confidence 589999999999999999998753 333 4788777666766666899999999999998 7899999999999999999
Q ss_pred CchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccC
Q psy1914 91 TVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLG 170 (211)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (211)
++.+ +.....++..+++...+...++|+++|+||+|+.+.....+....+. +. .
T Consensus 80 ~~~~-~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~--~~-----~------------------ 133 (162)
T cd04157 80 DRLR-LVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLG--LE-----N------------------ 133 (162)
T ss_pred cHHH-HHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhC--Cc-----c------------------
Confidence 8654 67777777777665433334599999999999976543332222111 00 0
Q ss_pred CCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 171 NPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
. ...++.+++|||++|+| ++++++||.+
T Consensus 134 -------~--~~~~~~~~~~Sa~~g~g---v~~~~~~l~~ 161 (162)
T cd04157 134 -------I--KDKPWHIFASNALTGEG---LDEGVQWLQA 161 (162)
T ss_pred -------c--cCceEEEEEeeCCCCCc---hHHHHHHHhc
Confidence 0 01236789999999999 9999999974
No 21
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.97 E-value=8.3e-30 Score=185.67 Aligned_cols=159 Identities=22% Similarity=0.361 Sum_probs=123.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCc-eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKK-NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~ 91 (211)
||+++|++|||||||++++.++.+....||++.....+...+. .+.+||+||+..+.. .+..++.++|++++|+|+++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~~~~iv~v~D~~~ 79 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRT-VWKCYLENTDGLVYVVDSSD 79 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHH-HHHHHhccCCEEEEEEECCc
Confidence 5899999999999999999999887777888877766666543 899999999999888 68888999999999999998
Q ss_pred chhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCC
Q psy1914 92 VQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGN 171 (211)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (211)
+.+ +.....++..+++.....+ +|+++|+||+|+.......++... +.. ..
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~i~~~----~~~---------~~------------- 130 (160)
T cd04156 80 EAR-LDESQKELKHILKNEHIKG--VPVVLLANKQDLPGALTAEEITRR----FKL---------KK------------- 130 (160)
T ss_pred HHH-HHHHHHHHHHHHhchhhcC--CCEEEEEECcccccCcCHHHHHHH----cCC---------cc-------------
Confidence 664 7888888888876543334 999999999999754333322211 110 00
Q ss_pred CCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 172 PDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
+ .....+++++|||++|+| +++++++|.++
T Consensus 131 ------~-~~~~~~~~~~~Sa~~~~g---v~~~~~~i~~~ 160 (160)
T cd04156 131 ------Y-CSDRDWYVQPCSAVTGEG---LAEAFRKLASF 160 (160)
T ss_pred ------c-CCCCcEEEEecccccCCC---hHHHHHHHhcC
Confidence 0 001236789999999999 99999999764
No 22
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.97 E-value=8.6e-30 Score=185.41 Aligned_cols=157 Identities=27% Similarity=0.451 Sum_probs=121.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTV 92 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~ 92 (211)
||+++|+++||||||++++..+.+....||++.+...+.+.+..+.+|||||+..++. ++..++..++++++|+|++++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~ii~v~d~~~~ 79 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRP-YWRCYYSNTDAIIYVVDSTDR 79 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHH-HHHHHhcCCCEEEEEEECCCH
Confidence 6899999999999999999888877667888887777777777999999999999988 789999999999999999885
Q ss_pred hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCC
Q psy1914 93 QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNP 172 (211)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (211)
.+ +....+++..+++.....+ +|+++|+||+|+.+.....++...+ .. . .
T Consensus 80 ~~-~~~~~~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~~~~~~i~~~~----~~---~---~----------------- 129 (158)
T cd04151 80 DR-LGTAKEELHAMLEEEELKG--AVLLVFANKQDMPGALSEAEISEKL----GL---S---E----------------- 129 (158)
T ss_pred HH-HHHHHHHHHHHHhchhhcC--CcEEEEEeCCCCCCCCCHHHHHHHh----Cc---c---c-----------------
Confidence 54 6666677776665433333 8999999999997554333222111 10 0 0
Q ss_pred CCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 173 DKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+ .....++++|||++|+| ++++++||.+
T Consensus 130 -----~--~~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 157 (158)
T cd04151 130 -----L--KDRTWSIFKTSAIKGEG---LDEGMDWLVN 157 (158)
T ss_pred -----c--CCCcEEEEEeeccCCCC---HHHHHHHHhc
Confidence 0 01226789999999999 9999999975
No 23
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.97 E-value=1.7e-29 Score=188.70 Aligned_cols=155 Identities=15% Similarity=0.200 Sum_probs=121.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|..|||||||+.++..+.+...+ ++.+... ..+.+++. .+.+|||+|++.+.. ++..+++++|++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~-l~~~~~~~ad~i 82 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCT-IFRSYSRGAQGI 82 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHH-HHHHHhcCCCEE
Confidence 34589999999999999999999998886655 4544433 34566664 788999999999998 789999999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|||++++.+ ++.+..|+..+.... ++.|+++|+||+||...+... +....+.+.
T Consensus 83 llVfD~t~~~S-f~~~~~w~~~i~~~~----~~~piilVGNK~DL~~~~~v~~~~~~~~a~~------------------ 139 (189)
T cd04121 83 ILVYDITNRWS-FDGIDRWIKEIDEHA----PGVPKILVGNRLHLAFKRQVATEQAQAYAER------------------ 139 (189)
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHhC----CCCCEEEEEECccchhccCCCHHHHHHHHHH------------------
Confidence 99999999665 999988888875432 349999999999997654322 112222211
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++++|||++|.| ++++++||.+
T Consensus 140 --------------------~~~~~~e~SAk~g~~---V~~~F~~l~~ 164 (189)
T cd04121 140 --------------------NGMTFFEVSPLCNFN---ITESFTELAR 164 (189)
T ss_pred --------------------cCCEEEEecCCCCCC---HHHHHHHHHH
Confidence 126899999999999 9999999975
No 24
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.97 E-value=8.2e-30 Score=191.16 Aligned_cols=168 Identities=11% Similarity=0.126 Sum_probs=117.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
..+||+++|+++||||||+.++..+.+...+ ||++..+.. +.+++. .+.+|||+|++.++. ++..+++++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~-l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDR-LRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhh-hhhhhccCCCEEEE
Confidence 3589999999999999999999999987665 677655442 456654 789999999999998 79999999999999
Q ss_pred EEeCCCchhhHHHHHH-HHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAE-SLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|||++++.+ ++.+.. |+..+... . .++|+++|+||+||.+.....+.... .. ....+. ++
T Consensus 81 vydit~~~S-f~~~~~~w~~~i~~~--~--~~~piilvgNK~DL~~~~~~~~~~~~----~~---~~~v~~-------~~ 141 (191)
T cd01875 81 CFSIASPSS-YENVRHKWHPEVCHH--C--PNVPILLVGTKKDLRNDADTLKKLKE----QG---QAPITP-------QQ 141 (191)
T ss_pred EEECCCHHH-HHHHHHHHHHHHHhh--C--CCCCEEEEEeChhhhcChhhHHHHhh----cc---CCCCCH-------HH
Confidence 999999765 888875 44444332 1 24999999999999754322111100 00 000000 00
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+. +-.+.+++++|||++|+| +++++++|.+
T Consensus 142 ~~~~a----------~~~~~~~~~e~SAk~g~~---v~e~f~~l~~ 174 (191)
T cd01875 142 GGALA----------KQIHAVKYLECSALNQDG---VKEVFAEAVR 174 (191)
T ss_pred HHHHH----------HHcCCcEEEEeCCCCCCC---HHHHHHHHHH
Confidence 00000 001126889999999999 9999999875
No 25
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.97 E-value=1.5e-29 Score=185.15 Aligned_cols=155 Identities=17% Similarity=0.258 Sum_probs=119.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
++||+++|.+|||||||+++++.+.+...+ ||++.... .+.+++. .+.+|||||++.+.. ++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA-MRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchh-HHHHHHhhCCEEEEE
Confidence 479999999999999999999988886655 55544333 4566654 678999999999998 789999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|+++..+ ++....|+..+...... .+.|+++|+||+|+.+...... ....+.+.++
T Consensus 80 ~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------------- 137 (164)
T cd04175 80 YSITAQST-FNDLQDLREQILRVKDT--EDVPMILVGNKCDLEDERVVGKEQGQNLARQWG------------------- 137 (164)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEECCcchhccEEcHHHHHHHHHHhC-------------------
Confidence 99988554 88888888887754322 3499999999999976543221 1122222111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|.| ++++++||.+
T Consensus 138 -------------------~~~~~~Sa~~~~~---v~~~~~~l~~ 160 (164)
T cd04175 138 -------------------CAFLETSAKAKIN---VNEIFYDLVR 160 (164)
T ss_pred -------------------CEEEEeeCCCCCC---HHHHHHHHHH
Confidence 6789999999999 9999999874
No 26
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.97 E-value=1.7e-29 Score=186.50 Aligned_cols=155 Identities=13% Similarity=0.223 Sum_probs=118.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
.+||+++|.+|||||||++++..+.+...+ ||++..+. .+.+++. .+.+|||||++.++. ++..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTA-MRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHH-HhHHHhhcCCEEEEE
Confidence 479999999999999999999999987554 66665443 3666664 788999999999998 799999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
||++++.+ +..+..|+..+..... ..++|+++|+||+|+.+.+.... ....+.+.
T Consensus 81 ~d~~~~~S-f~~~~~~~~~i~~~~~--~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~--------------------- 136 (172)
T cd04141 81 YSVTDRHS-FQEASEFKKLITRVRL--TEDIPLVLVGNKVDLESQRQVTTEEGRNLARE--------------------- 136 (172)
T ss_pred EECCchhH-HHHHHHHHHHHHHhcC--CCCCCEEEEEEChhhhhcCccCHHHHHHHHHH---------------------
Confidence 99999665 8888776555443211 23499999999999976543321 11112111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++++|||++|.| |+++++||.+
T Consensus 137 -----------------~~~~~~e~Sa~~~~~---v~~~f~~l~~ 161 (172)
T cd04141 137 -----------------FNCPFFETSAALRHY---IDDAFHGLVR 161 (172)
T ss_pred -----------------hCCEEEEEecCCCCC---HHHHHHHHHH
Confidence 127899999999999 9999999874
No 27
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.97 E-value=2.3e-29 Score=183.29 Aligned_cols=155 Identities=17% Similarity=0.260 Sum_probs=117.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
++||+++|++|||||||+++++++.+...+ ||++... ..+.+++. .+.+|||||++.++. ++..++++++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-MRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHH-HHHHHHhcCCEEEEE
Confidence 368999999999999999999998886655 4544332 33556654 578899999999998 789999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|+++..+ +.....|+..+.+.... .++|+++|+||+|+.+..........+.+..
T Consensus 80 ~~~~~~~s-~~~~~~~~~~i~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--------------------- 135 (162)
T cd04138 80 FAINSRKS-FEDIHTYREQIKRVKDS--DDVPMVLVGNKCDLAARTVSSRQGQDLAKSY--------------------- 135 (162)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEECcccccceecHHHHHHHHHHh---------------------
Confidence 99998554 77777777777654322 2489999999999975332222121221111
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++++||++|+| +++++++|.+
T Consensus 136 -----------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 159 (162)
T cd04138 136 -----------------GIPYIETSAKTRQG---VEEAFYTLVR 159 (162)
T ss_pred -----------------CCeEEEecCCCCCC---HHHHHHHHHH
Confidence 15789999999999 9999999875
No 28
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.97 E-value=1.7e-29 Score=184.39 Aligned_cols=155 Identities=18% Similarity=0.267 Sum_probs=118.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee-eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN-VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~-~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
++||+++|++|||||||++++..+.+...+ ||++.. ...+.+++. .+.+|||||++.+.. ++..++++++++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTA-MRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccch-HHHHHhhcCCEEEEE
Confidence 379999999999999999999998887665 454422 334666665 678899999999988 788899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++.+ ++....|+..+...... .++|+++|+||+|+.+.+.... ....+.+.
T Consensus 80 ~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--------------------- 135 (163)
T cd04136 80 YSITSQSS-FNDLQDLREQILRVKDT--ENVPMVLVGNKCDLEDERVVSREEGQALARQ--------------------- 135 (163)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEECccccccceecHHHHHHHHHH---------------------
Confidence 99998655 88888887777654322 3489999999999975433221 11111111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++|||++|+| ++++++||.+
T Consensus 136 -----------------~~~~~~~~Sa~~~~~---v~~l~~~l~~ 160 (163)
T cd04136 136 -----------------WGCPFYETSAKSKIN---VDEVFADLVR 160 (163)
T ss_pred -----------------cCCeEEEecCCCCCC---HHHHHHHHHH
Confidence 116789999999999 9999999975
No 29
>KOG0092|consensus
Probab=99.97 E-value=5.8e-30 Score=184.03 Aligned_cols=157 Identities=17% Similarity=0.228 Sum_probs=127.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccc-ccccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFES-CTSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
....+||+++|..++|||||+-|+..+.|.+. .||+|...- .+.+++. ++.+|||+|+++|+. +-+.||+++++
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~s-lapMYyRgA~A 80 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHS-LAPMYYRGANA 80 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccc-cccceecCCcE
Confidence 34678999999999999999999999999875 588886544 4666665 788999999999999 89999999999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+|+|||+++.++ |..+..|+.++-.... +++-+.+||||+||.+.+.+.. ..+.+.+.
T Consensus 81 AivvYDit~~~S-F~~aK~WvkeL~~~~~---~~~vialvGNK~DL~~~R~V~~~ea~~yAe~----------------- 139 (200)
T KOG0092|consen 81 AIVVYDITDEES-FEKAKNWVKELQRQAS---PNIVIALVGNKADLLERREVEFEEAQAYAES----------------- 139 (200)
T ss_pred EEEEEecccHHH-HHHHHHHHHHHHhhCC---CCeEEEEecchhhhhhcccccHHHHHHHHHh-----------------
Confidence 999999999555 9999999999876533 5588899999999998555432 12222221
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....|+++|||||.| +++++.-|.+
T Consensus 140 ---------------------~gll~~ETSAKTg~N---v~~if~~Ia~ 164 (200)
T KOG0092|consen 140 ---------------------QGLLFFETSAKTGEN---VNEIFQAIAE 164 (200)
T ss_pred ---------------------cCCEEEEEecccccC---HHHHHHHHHH
Confidence 126889999999999 9999987754
No 30
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.97 E-value=4.8e-29 Score=186.79 Aligned_cols=172 Identities=20% Similarity=0.318 Sum_probs=129.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
.+..||+++|++|||||||++++.++.+....||.++....+.+++..+.+||+||+..+.. .+..++++++++++|+|
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~-~~~~~~~~ad~iilV~D 95 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARR-LWKDYFPEVDGIVFLVD 95 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHH-HHHHHhccCCEEEEEEE
Confidence 56799999999999999999999988876666788888888888888999999999999887 68889999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
+++..+ +.....++..+++.....+ .|+++++||+|+.......+..+.+ +...... +. ..
T Consensus 96 ~~~~~s-~~~~~~~~~~i~~~~~~~~--~pvivv~NK~Dl~~~~~~~~~~~~~----~~~~~~~-~~--~~--------- 156 (190)
T cd00879 96 AADPER-FQESKEELDSLLSDEELAN--VPFLILGNKIDLPGAVSEEELRQAL----GLYGTTT-GK--GV--------- 156 (190)
T ss_pred CCcHHH-HHHHHHHHHHHHcCccccC--CCEEEEEeCCCCCCCcCHHHHHHHh----Ccccccc-cc--cc---------
Confidence 998654 7777888888876543334 9999999999997654444333222 2100000 00 00
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+. -......+.+++|||++|+| ++++++||.+
T Consensus 157 -~~------~~~~~~~~~~~~~Sa~~~~g---v~e~~~~l~~ 188 (190)
T cd00879 157 -SL------KVSGIRPIEVFMCSVVKRQG---YGEAFRWLSQ 188 (190)
T ss_pred -cc------cccCceeEEEEEeEecCCCC---hHHHHHHHHh
Confidence 00 00012347899999999999 9999999976
No 31
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.97 E-value=3.1e-29 Score=183.78 Aligned_cols=158 Identities=18% Similarity=0.241 Sum_probs=115.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
.+||+++|++|||||||+++++++.+...+ ||.+..+.. +..+.. .+.+|||||++.+.. ++..+++.++++++|
T Consensus 1 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~~ilv 79 (165)
T cd04140 1 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPA-MQRLSISKGHAFILV 79 (165)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchH-HHHHHhhcCCEEEEE
Confidence 378999999999999999999998886554 555433332 344433 788999999999988 788888999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|+++.++ +.....|+..+........+++|+++|+||+|+.+.+.... ....+..
T Consensus 80 ~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~---------------------- 136 (165)
T cd04140 80 YSVTSKQS-LEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACAT---------------------- 136 (165)
T ss_pred EECCCHHH-HHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHH----------------------
Confidence 99998665 77777776555432111223499999999999976443221 1111111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
...+.+++|||++|+| ++++++||.++
T Consensus 137 ----------------~~~~~~~e~SA~~g~~---v~~~f~~l~~~ 163 (165)
T cd04140 137 ----------------EWNCAFMETSAKTNHN---VQELFQELLNL 163 (165)
T ss_pred ----------------HhCCcEEEeecCCCCC---HHHHHHHHHhc
Confidence 1126789999999999 99999999864
No 32
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.97 E-value=4.5e-29 Score=183.04 Aligned_cols=153 Identities=18% Similarity=0.231 Sum_probs=118.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||++++..+.+...+ +|++.... .+.+++. .+.+|||||++.+.. .+..++++++++++|
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~~ilv 81 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRA-VTRSYYRGAAGALMV 81 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHH-HHHHHhcCCCEEEEE
Confidence 79999999999999999999999887666 45555543 3455654 789999999999988 688899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++.+ ++.+..|+..+... ..++.|+++|+||+|+...+... +....+.+.
T Consensus 82 ~d~~~~~s-~~~~~~~~~~~~~~---~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~--------------------- 136 (166)
T cd04122 82 YDITRRST-YNHLSSWLTDARNL---TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADE--------------------- 136 (166)
T ss_pred EECCCHHH-HHHHHHHHHHHHHh---CCCCCeEEEEEECcccccccCcCHHHHHHHHHH---------------------
Confidence 99999665 88888888776542 22348999999999997655432 111112111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.++++|||++|+| ++++++++.+
T Consensus 137 -----------------~~~~~~e~Sa~~~~~---i~e~f~~l~~ 161 (166)
T cd04122 137 -----------------NGLLFLECSAKTGEN---VEDAFLETAK 161 (166)
T ss_pred -----------------cCCEEEEEECCCCCC---HHHHHHHHHH
Confidence 126889999999999 9999988864
No 33
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.97 E-value=2.4e-29 Score=184.51 Aligned_cols=159 Identities=25% Similarity=0.397 Sum_probs=122.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcc------c-ccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKY------F-ESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~------~-~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+|+++|++|||||||++++.+... . ...||++.+...+.+++..+.+|||||++.+.. ++..++..+|++++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~~~~v~ 79 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRS-LWDKYYAECHAIIY 79 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHH-HHHHHhCCCCEEEE
Confidence 589999999999999999986432 1 224777888888888888999999999999988 68889999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
|+|++++.+ +.....++..+++.....+ +|+++++||+|+.......+..+.+...... .
T Consensus 80 vvd~~~~~~-~~~~~~~~~~~~~~~~~~~--~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~-----------~------ 139 (167)
T cd04160 80 VIDSTDRER-FEESKSALEKVLRNEALEG--VPLLILANKQDLPDALSVEEIKEVFQDKAEE-----------I------ 139 (167)
T ss_pred EEECchHHH-HHHHHHHHHHHHhChhhcC--CCEEEEEEccccccCCCHHHHHHHhcccccc-----------c------
Confidence 999988654 7778888888776543334 9999999999997665544433333211100 0
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-...++++++||++|+| ++++++||.+
T Consensus 140 ---------------~~~~~~~~~~Sa~~g~g---v~e~~~~l~~ 166 (167)
T cd04160 140 ---------------GRRDCLVLPVSALEGTG---VREGIEWLVE 166 (167)
T ss_pred ---------------cCCceEEEEeeCCCCcC---HHHHHHHHhc
Confidence 01237899999999999 9999999974
No 34
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=7.9e-29 Score=180.99 Aligned_cols=154 Identities=21% Similarity=0.293 Sum_probs=120.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||++++..+.+.+.+ ||++.+.. .+.+++. .+.+||++|++.+.. ++..+++++|++++|
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-~~~~~~~~~~~~i~v 79 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT-ITKQYYRRAQGIFLV 79 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh-hHHHHhcCCcEEEEE
Confidence 48999999999999999999999887654 67776543 4566664 788999999999888 688899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
||++++++ +..+..|+..+.... ..++|+++|+||+|+...+... +....+.+..
T Consensus 80 ~d~~~~~s-f~~~~~~~~~~~~~~---~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~-------------------- 135 (161)
T cd04117 80 YDISSERS-YQHIMKWVSDVDEYA---PEGVQKILIGNKADEEQKRQVGDEQGNKLAKEY-------------------- 135 (161)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccCCCHHHHHHHHHHc--------------------
Confidence 99999655 888888877765432 2348999999999997665432 2222222211
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
..++++|||++|.| ++++++||.++
T Consensus 136 ------------------~~~~~e~Sa~~~~~---v~~~f~~l~~~ 160 (161)
T cd04117 136 ------------------GMDFFETSACTNSN---IKESFTRLTEL 160 (161)
T ss_pred ------------------CCEEEEEeCCCCCC---HHHHHHHHHhh
Confidence 16789999999999 99999999864
No 35
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.97 E-value=5.9e-29 Score=189.54 Aligned_cols=114 Identities=22% Similarity=0.264 Sum_probs=97.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~ 91 (211)
+||+++|.+|||||||+++|..+.+....||++.......+....+.+|||||++.+.. ++..+++++|++|+|||+++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~-l~~~~~~~ad~~IlV~Dvt~ 79 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHG-LGSMYCRGAAAVILTYDVSN 79 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchh-hHHHHhccCCEEEEEEECCC
Confidence 58999999999999999999999987767888776665555556899999999999988 78889999999999999999
Q ss_pred chhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 92 VQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
.++ +..+..||..+.... ..++|+++|+||+||.+
T Consensus 80 ~~S-f~~l~~~~~~l~~~~---~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 80 VQS-LEELEDRFLGLTDTA---NEDCLFAVVGNKLDLTE 114 (220)
T ss_pred HHH-HHHHHHHHHHHHHhc---CCCCcEEEEEECccccc
Confidence 655 888888888876532 23489999999999975
No 36
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.97 E-value=7.2e-29 Score=180.40 Aligned_cols=157 Identities=24% Similarity=0.409 Sum_probs=127.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTV 92 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~ 92 (211)
||+++|++|||||||++++++..+....+|.+.....+.+++..+.+||+||+..+.. .+..++.++|++++|+|++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~i~v~D~~~~ 79 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRP-LWKHYYENTNGIIFVVDSSDR 79 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHH-HHHHHhccCCEEEEEEECCCH
Confidence 6899999999999999999998876677888888888888888999999999999888 688899999999999999986
Q ss_pred hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCC
Q psy1914 93 QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNP 172 (211)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (211)
.+ +.....++..+...... .+.|+++|+||+|+.......+..+.+....
T Consensus 80 ~~-~~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~--------------------------- 129 (158)
T cd00878 80 ER-IEEAKEELHKLLNEEEL--KGVPLLIFANKQDLPGALSVSELIEKLGLEK--------------------------- 129 (158)
T ss_pred HH-HHHHHHHHHHHHhCccc--CCCcEEEEeeccCCccccCHHHHHHhhChhh---------------------------
Confidence 54 88888888888765433 3499999999999987664444333322100
Q ss_pred CCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 173 DKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....++++++||++|.| +++++++|.+
T Consensus 130 -------~~~~~~~~~~~Sa~~~~g---v~~~~~~l~~ 157 (158)
T cd00878 130 -------ILGRRWHIQPCSAVTGDG---LDEGLDWLLQ 157 (158)
T ss_pred -------ccCCcEEEEEeeCCCCCC---HHHHHHHHhh
Confidence 012347899999999999 9999999864
No 37
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.97 E-value=2.7e-29 Score=185.65 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=116.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
+||+++|.+++|||||+.++..+.+...+ ||++..+. .+.+++. .+.+|||+|++.++. ++..++++++++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~-~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNR-LRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccc-cchhhcCCCcEEEEEE
Confidence 58999999999999999999999997665 67765443 3566655 889999999999998 7888999999999999
Q ss_pred eCCCchhhHHHH-HHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC----------H-HHHHHHHHHHHHHHhhhcccc
Q psy1914 88 DSSTVQKTLRDV-AESLYVILADPQVQSSRVNILVCCNKQDQTLAKS----------S-SVVKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 88 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~-~~~~~~l~~~~~~~~~~~~~~ 155 (211)
|.+++.+ ++.+ ..|+..+.+.. .++|+++|+||+||.+.+. . .+....+.+.
T Consensus 81 d~~~~~S-f~~~~~~w~~~i~~~~----~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~----------- 144 (176)
T cd04133 81 SLISRAS-YENVLKKWVPELRHYA----PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ----------- 144 (176)
T ss_pred EcCCHHH-HHHHHHHHHHHHHHhC----CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH-----------
Confidence 9999665 8887 46766664432 2499999999999965421 1 1111111111
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcE-EEEEEeeecCCCccchHHHHHHHhh
Q psy1914 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQV-SFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
... .+++|||++|+| |+++++.+.+
T Consensus 145 ---------------------------~~~~~~~E~SAk~~~n---V~~~F~~~~~ 170 (176)
T cd04133 145 ---------------------------IGAAAYIECSSKTQQN---VKAVFDAAIK 170 (176)
T ss_pred ---------------------------cCCCEEEECCCCcccC---HHHHHHHHHH
Confidence 113 689999999999 9999998865
No 38
>KOG0078|consensus
Probab=99.97 E-value=5.1e-29 Score=182.21 Aligned_cols=155 Identities=22% Similarity=0.284 Sum_probs=128.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
..-+||+++|.++||||+++.++..+.|...+ .|+|. ...++++++. .+++|||+|+++|+. +...|+++|+++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~t-i~~sYyrgA~gi 88 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRT-ITTAYYRGAMGI 88 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHH-HHHHHHhhcCee
Confidence 45689999999999999999999999997766 45554 4556788887 889999999999999 899999999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|||+++ +.+++.+..|+..+-++. ..++|+++||||+|+...+.+ .+..+.+..++.
T Consensus 89 ~LvyDitn-e~Sfeni~~W~~~I~e~a---~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G---------------- 148 (207)
T KOG0078|consen 89 LLVYDITN-EKSFENIRNWIKNIDEHA---SDDVVKILVGNKCDLEEKRQVSKERGEALAREYG---------------- 148 (207)
T ss_pred EEEEEccc-hHHHHHHHHHHHHHHhhC---CCCCcEEEeeccccccccccccHHHHHHHHHHhC----------------
Confidence 99999999 455999999777776543 235999999999999987664 344455655555
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
+.|+++|||+|.| |+|.+--|.
T Consensus 149 ----------------------~~F~EtSAk~~~N---I~eaF~~La 170 (207)
T KOG0078|consen 149 ----------------------IKFFETSAKTNFN---IEEAFLSLA 170 (207)
T ss_pred ----------------------CeEEEccccCCCC---HHHHHHHHH
Confidence 8999999999999 999886654
No 39
>PTZ00369 Ras-like protein; Provisional
Probab=99.97 E-value=8.4e-29 Score=185.44 Aligned_cols=157 Identities=18% Similarity=0.297 Sum_probs=120.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..++||+++|++|||||||++++.++.+...+ ||++..+. .+.+++. .+.+|||||++.+.. ++..+++++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSA-MRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchh-hHHHHhhcCCEEE
Confidence 45789999999999999999999998886555 55554443 3556655 688999999999998 7899999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ ++.+..|+..+..... ..++|+++|+||+|+.+...... ....+.+..
T Consensus 82 lv~D~s~~~s-~~~~~~~~~~i~~~~~--~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~------------------ 140 (189)
T PTZ00369 82 CVYSITSRSS-FEEIASFREQILRVKD--KDRVPMILVGNKCDLDSERQVSTGEGQELAKSF------------------ 140 (189)
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccccccCHHHHHHHHHHh------------------
Confidence 9999999665 8888887777664322 23489999999999975443221 111111111
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++++|||++|.| ++++++||.+
T Consensus 141 --------------------~~~~~e~Sak~~~g---i~~~~~~l~~ 164 (189)
T PTZ00369 141 --------------------GIPFLETSAKQRVN---VDEAFYELVR 164 (189)
T ss_pred --------------------CCEEEEeeCCCCCC---HHHHHHHHHH
Confidence 15789999999999 9999999964
No 40
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.97 E-value=8e-29 Score=182.50 Aligned_cols=153 Identities=18% Similarity=0.263 Sum_probs=117.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
||+++|.+|||||||++++.++.+...+ ||++..+ ..+.+++. .+.+|||||++.+.. ++..+++++|++++|+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~ad~~ilv~ 80 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKC-IASTYYRGAQAIIIVF 80 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHh-hHHHHhcCCCEEEEEE
Confidence 7999999999999999999999887666 6766554 34556654 799999999999988 7888999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH---HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS---VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|++++.+ +.....|+..+++..... ..|+++|+||+|+.+..... +....+.+.+
T Consensus 81 d~~~~~s-~~~~~~~~~~~~~~~~~~--~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~------------------- 138 (170)
T cd04108 81 DLTDVAS-LEHTRQWLEDALKENDPS--SVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEM------------------- 138 (170)
T ss_pred ECcCHHH-HHHHHHHHHHHHHhcCCC--CCeEEEEEEChhcCccccccccHHHHHHHHHHc-------------------
Confidence 9988554 788888887776543222 37899999999996543321 1111111111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++|||++|+| +++++++|.+
T Consensus 139 -------------------~~~~~e~Sa~~g~~---v~~lf~~l~~ 162 (170)
T cd04108 139 -------------------QAEYWSVSALSGEN---VREFFFRVAA 162 (170)
T ss_pred -------------------CCeEEEEECCCCCC---HHHHHHHHHH
Confidence 15789999999999 9999998865
No 41
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1.2e-28 Score=186.34 Aligned_cols=156 Identities=17% Similarity=0.251 Sum_probs=117.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEec-Cc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYE-KK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~-~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+||+++|++|||||||+++|.++.+...+ ||++... ..+.++ +. .+.+|||||++.+.. ++..++++++++|+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~a~~~il 79 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGG-MTRVYYRGAVGAII 79 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhh-hHHHHhCCCCEEEE
Confidence 58999999999999999999998886655 6666443 345665 43 789999999999988 78999999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCc-CCCCCcEEEEEeCCCccCCC--CHHHHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQV-QSSRVNILVCCNKQDQTLAK--SSSVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|||++++.+ ++.+..|+..+...... ...++|+++|+||+|+...+ ..++.. .+.+..
T Consensus 80 v~D~t~~~s-~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~-~~~~~~----------------- 140 (201)
T cd04107 80 VFDVTRPST-FEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMD-QFCKEN----------------- 140 (201)
T ss_pred EEECCCHHH-HHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHH-HHHHHc-----------------
Confidence 999999665 88887776665432111 12358999999999997422 222222 221111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++|||++|+| ++++++||.+
T Consensus 141 --------------------~~~~~~e~Sak~~~~---v~e~f~~l~~ 165 (201)
T cd04107 141 --------------------GFIGWFETSAKEGIN---IEEAMRFLVK 165 (201)
T ss_pred --------------------CCceEEEEeCCCCCC---HHHHHHHHHH
Confidence 115789999999999 9999999975
No 42
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=1.5e-28 Score=183.21 Aligned_cols=161 Identities=23% Similarity=0.326 Sum_probs=121.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEe-----cCceEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTY-----EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+.+||+++|++|||||||++++..+.+....||.+.....+++ .+..+.+|||||++.+.. ++..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRP-LWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHH-HHHHHhccCCEEE
Confidence 3589999999999999999999998887777887766655544 223899999999999988 7999999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|+|++++.+ +.....++..+....... ++|+++|+||+|+.+.....+....+. +.. .
T Consensus 81 ~v~D~~~~~~-~~~~~~~~~~i~~~~~~~--~~p~iiv~NK~D~~~~~~~~~~~~~~~--~~~-----~----------- 139 (183)
T cd04152 81 FVVDSVDVER-MEEAKTELHKITRFSENQ--GVPVLVLANKQDLPNALSVSEVEKLLA--LHE-----L----------- 139 (183)
T ss_pred EEEECCCHHH-HHHHHHHHHHHHhhhhcC--CCcEEEEEECcCccccCCHHHHHHHhC--ccc-----c-----------
Confidence 9999998654 777777777666532222 489999999999975444333221111 000 0
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.-...+++++|||++|+| ++++++||.+
T Consensus 140 ---------------~~~~~~~~~~~SA~~~~g---i~~l~~~l~~ 167 (183)
T cd04152 140 ---------------SASTPWHVQPACAIIGEG---LQEGLEKLYE 167 (183)
T ss_pred ---------------CCCCceEEEEeecccCCC---HHHHHHHHHH
Confidence 001226789999999999 9999999874
No 43
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=9.8e-29 Score=183.89 Aligned_cols=158 Identities=16% Similarity=0.156 Sum_probs=117.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||++++..+.+...+ ||++.... .+.+++. .+.+|||+|++.+.. ++..+++++|++++|
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~-~~~~~~~~a~~iilv 79 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFIN-MLPLVCNDAVAILFM 79 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHH-hhHHHCcCCCEEEEE
Confidence 58999999999999999999999987765 77776553 4666665 789999999999988 788899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
||++++.+ +..+..|+..+.+.. ....| ++|+||+|+.......... .+.++......
T Consensus 80 ~D~t~~~s-~~~i~~~~~~~~~~~---~~~~p-ilVgnK~Dl~~~~~~~~~~-~~~~~~~~~a~---------------- 137 (182)
T cd04128 80 FDLTRKST-LNSIKEWYRQARGFN---KTAIP-ILVGTKYDLFADLPPEEQE-EITKQARKYAK---------------- 137 (182)
T ss_pred EECcCHHH-HHHHHHHHHHHHHhC---CCCCE-EEEEEchhccccccchhhh-hhHHHHHHHHH----------------
Confidence 99999665 888888887776532 12367 6789999996432111100 01111110000
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.++++|||++|+| ++++++||.+
T Consensus 138 ---------------~~~~~~~e~SAk~g~~---v~~lf~~l~~ 163 (182)
T cd04128 138 ---------------AMKAPLIFCSTSHSIN---VQKIFKIVLA 163 (182)
T ss_pred ---------------HcCCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 0116789999999999 9999999864
No 44
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=7.2e-29 Score=183.93 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=92.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
++||+++|++|||||||++++.++.+...+ ||++..+. .+.+++. .+.+|||+|++.+.. +.+.+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~-~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDN-VRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhh-cchhhcCCCCEEEEE
Confidence 479999999999999999999999887666 66655443 3566665 788999999999988 788899999999999
Q ss_pred EeCCCchhhHHHH-HHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 87 LDSSTVQKTLRDV-AESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 87 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
||++++.+ ++.+ ..|+..+.+.. ++.|+++|+||+||.+
T Consensus 80 fdit~~~S-f~~~~~~w~~~i~~~~----~~~~iilVgnK~DL~~ 119 (178)
T cd04131 80 FDISRPET-LDSVLKKWRGEIQEFC----PNTKVLLVGCKTDLRT 119 (178)
T ss_pred EECCChhh-HHHHHHHHHHHHHHHC----CCCCEEEEEEChhhhc
Confidence 99999665 8775 56655554321 3489999999999964
No 45
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=1.8e-28 Score=187.22 Aligned_cols=156 Identities=14% Similarity=0.188 Sum_probs=117.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecC---ceEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEK---KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~---~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+||+++|++|||||||+++|.++.+...+ ||++... ..+.+++ ..+.+|||||++.+.. ++..+++++|++|+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~-l~~~~~~~ad~iil 79 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGK-MLDKYIYGAHAVFL 79 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHH-HHHHHhhcCCEEEE
Confidence 58999999999999999999998887665 6766544 3456644 2889999999999888 78899999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|||++++++ ++.+..|+..+.........+.|+++|+||+|+.+.+... +....+.+..
T Consensus 80 V~D~t~~~s-~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~------------------- 139 (215)
T cd04109 80 VYDVTNSQS-FENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQAN------------------- 139 (215)
T ss_pred EEECCCHHH-HHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHc-------------------
Confidence 999999665 8888777766654322112347899999999997544322 1122222111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++|||++|+| +++++++|.+
T Consensus 140 -------------------~~~~~~iSAktg~g---v~~lf~~l~~ 163 (215)
T cd04109 140 -------------------GMESCLVSAKTGDR---VNLLFQQLAA 163 (215)
T ss_pred -------------------CCEEEEEECCCCCC---HHHHHHHHHH
Confidence 15678999999999 9999999875
No 46
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=9.8e-29 Score=185.22 Aligned_cols=155 Identities=17% Similarity=0.274 Sum_probs=116.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
||+++|.+|||||||+++|+.+.+...+ ||++... ..+.+++. .+.+|||||++.+.. ++..+++++|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTA-LRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHH-HHHHHHHhCCEEEEEEE
Confidence 5899999999999999999998886655 4554333 33556655 588999999999998 78889999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHH-HHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV-KTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
+++..+ +..+..|+..+.........++|+++|+||+|+...+..... ...+.+.+
T Consensus 80 ~~~~~s-~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~---------------------- 136 (190)
T cd04144 80 ITSRST-FERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRL---------------------- 136 (190)
T ss_pred CCCHHH-HHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHh----------------------
Confidence 998654 778888777665432211234899999999999754432211 11111111
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.++++||++|+| ++++++||.+
T Consensus 137 ----------------~~~~~e~SAk~~~~---v~~l~~~l~~ 160 (190)
T cd04144 137 ----------------GCEFIEASAKTNVN---VERAFYTLVR 160 (190)
T ss_pred ----------------CCEEEEecCCCCCC---HHHHHHHHHH
Confidence 15789999999999 9999999875
No 47
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.96 E-value=1.5e-28 Score=180.20 Aligned_cols=153 Identities=19% Similarity=0.264 Sum_probs=117.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||++++.++++...+ ||.+..+. .+..++. .+.+|||||++.+.. ++..++++++++++|
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~-~~~~~~~~~~~~l~v 80 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRT-ITTAYYRGAMGFILM 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH-HHHHHccCCcEEEEE
Confidence 68999999999999999999999986654 66654433 3444443 789999999999988 788999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++++ ++.+..|+..+.... ....|+++|+||+|+.+.+... +....+.+.++
T Consensus 81 ~d~~~~~s-~~~~~~~~~~i~~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~------------------- 137 (165)
T cd01865 81 YDITNEES-FNAVQDWSTQIKTYS---WDNAQVILVGNKCDMEDERVVSSERGRQLADQLG------------------- 137 (165)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhC---CCCCCEEEEEECcccCcccccCHHHHHHHHHHcC-------------------
Confidence 99998654 888888877765422 1248999999999997654321 11122222111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|.| +++++++|.+
T Consensus 138 -------------------~~~~~~Sa~~~~g---v~~l~~~l~~ 160 (165)
T cd01865 138 -------------------FEFFEASAKENIN---VKQVFERLVD 160 (165)
T ss_pred -------------------CEEEEEECCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999865
No 48
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.96 E-value=1.3e-28 Score=179.95 Aligned_cols=155 Identities=19% Similarity=0.265 Sum_probs=117.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccc-eeeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLK-ENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~-~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
++||+++|++|||||||++++..+.+...+ ||++ .....+.+++. .+.+|||||++++.. ++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS-MRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccc-hHHHHHhhCCEEEEE
Confidence 479999999999999999999999887665 4433 23334666665 678999999999988 789999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++.+ +.....|+..+...... .++|+++|+||+|+........ ....+.+..
T Consensus 80 ~d~~~~~s-~~~~~~~~~~~~~~~~~--~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~-------------------- 136 (163)
T cd04176 80 YSLVNQQT-FQDIKPMRDQIVRVKGY--EKVPIILVGNKVDLESEREVSSAEGRALAEEW-------------------- 136 (163)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEECccchhcCccCHHHHHHHHHHh--------------------
Confidence 99999665 88888887777653222 3499999999999965433221 111121111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++++|||++|.| ++++++||.+
T Consensus 137 ------------------~~~~~~~Sa~~~~~---v~~l~~~l~~ 160 (163)
T cd04176 137 ------------------GCPFMETSAKSKTM---VNELFAEIVR 160 (163)
T ss_pred ------------------CCEEEEecCCCCCC---HHHHHHHHHH
Confidence 15789999999999 9999999874
No 49
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.96 E-value=1.7e-28 Score=182.23 Aligned_cols=156 Identities=18% Similarity=0.285 Sum_probs=118.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecC------------ceEEEEECCCchhhhhhhHH
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEK------------KNIKIVDLPGEDRLRNKFFD 74 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~------------~~~~i~D~~G~~~~~~~~~~ 74 (211)
..+||+++|++|||||||++++..+.+...+ +|++.... .+.+.. ..+.+|||||++.+.. ++.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~ 81 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRS-LTT 81 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHH-HHH
Confidence 4589999999999999999999998886655 55554433 244331 2789999999999988 788
Q ss_pred HhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcc
Q psy1914 75 QYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKS 153 (211)
Q Consensus 75 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~ 153 (211)
.+++++|++++|+|++++++ +..+..|+..+...... .+.|+++|+||+|+.+.+... +....+.+..+
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~------- 151 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQS-FLNVRNWMSQLQTHAYC--ENPDIVLCGNKADLEDQRQVSEEQAKALADKYG------- 151 (180)
T ss_pred HHhCCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCC--CCCcEEEEEeCccchhcCccCHHHHHHHHHHcC-------
Confidence 89999999999999999655 88888887776543222 248999999999997654322 11222222111
Q ss_pred cccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 154 NQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|+| +++++++|.+
T Consensus 152 -------------------------------~~~~e~Sak~~~~---v~~l~~~l~~ 174 (180)
T cd04127 152 -------------------------------IPYFETSAATGTN---VEKAVERLLD 174 (180)
T ss_pred -------------------------------CeEEEEeCCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999875
No 50
>KOG0075|consensus
Probab=99.96 E-value=7.8e-30 Score=175.35 Aligned_cols=162 Identities=25% Similarity=0.374 Sum_probs=142.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
.+.++.+.++|..+||||||+|....+.+.... ||.|++...++-.+..+.+||.||++.|+. +|+.|++++++++||
T Consensus 17 ~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrs-mWerycR~v~aivY~ 95 (186)
T KOG0075|consen 17 WKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS-MWERYCRGVSAIVYV 95 (186)
T ss_pred HHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHH-HHHHHhhcCcEEEEE
Confidence 467899999999999999999999998887776 999999999998888999999999999999 899999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|+.+++. +..++.++..++..+.+.+ +|+++++||.|++++-...++.+.+. +.++
T Consensus 96 VDaad~~k-~~~sr~EL~~LL~k~~l~g--ip~LVLGnK~d~~~AL~~~~li~rmg-------------L~si------- 152 (186)
T KOG0075|consen 96 VDAADPDK-LEASRSELHDLLDKPSLTG--IPLLVLGNKIDLPGALSKIALIERMG-------------LSSI------- 152 (186)
T ss_pred eecCCccc-chhhHHHHHHHhcchhhcC--CcEEEecccccCcccccHHHHHHHhC-------------cccc-------
Confidence 99999766 8899999999999988888 99999999999998877655444332 1111
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-.+.+.++.+|++...+ |+.+.+||.+
T Consensus 153 --------------tdREvcC~siScke~~N---id~~~~Wli~ 179 (186)
T KOG0075|consen 153 --------------TDREVCCFSISCKEKVN---IDITLDWLIE 179 (186)
T ss_pred --------------ccceEEEEEEEEcCCcc---HHHHHHHHHH
Confidence 14569999999999999 9999999975
No 51
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.96 E-value=8.1e-29 Score=183.30 Aligned_cols=166 Identities=12% Similarity=0.154 Sum_probs=115.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
+||+++|.+|||||||++++..+.+...+ ||++..+. .+.+++. .+.+|||+|++.+.. ++..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDR-LRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhh-hhhhhcccCCEEEEEE
Confidence 68999999999999999999999986555 77766554 4566664 788999999999988 7888999999999999
Q ss_pred eCCCchhhHHHHHH-HHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 88 DSSTVQKTLRDVAE-SLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 88 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
|++++++ ++.+.. |+..+... . +++|+++|+||+|+.+.... .+.+.. ......+. ++..
T Consensus 81 d~~~~~s-~~~~~~~w~~~i~~~--~--~~~piilvgnK~Dl~~~~~~---~~~l~~----~~~~~v~~-------~~~~ 141 (175)
T cd01874 81 SVVSPSS-FENVKEKWVPEITHH--C--PKTPFLLVGTQIDLRDDPST---IEKLAK----NKQKPITP-------ETGE 141 (175)
T ss_pred ECCCHHH-HHHHHHHHHHHHHHh--C--CCCCEEEEEECHhhhhChhh---HHHhhh----ccCCCcCH-------HHHH
Confidence 9999655 888865 54444332 1 34899999999999654221 111110 00000000 0000
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+. .-.+.+.+++|||++|+| ++++++.+.+
T Consensus 142 ~~a----------~~~~~~~~~e~SA~tg~~---v~~~f~~~~~ 172 (175)
T cd01874 142 KLA----------RDLKAVKYVECSALTQKG---LKNVFDEAIL 172 (175)
T ss_pred HHH----------HHhCCcEEEEecCCCCCC---HHHHHHHHHH
Confidence 000 001226899999999999 9999988764
No 52
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.96 E-value=1.4e-28 Score=180.61 Aligned_cols=151 Identities=15% Similarity=0.268 Sum_probs=115.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEEe--cCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFTY--EKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~--~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||++++..+.+...+ ||.+.....+.+ ++. .+.+|||||++.+.. ++..++..+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~~i~v 79 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG-LRDGYYIGGQCAIIM 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc-ccHHHhcCCCEEEEE
Confidence 58999999999999999999988775544 666666555433 332 889999999998887 678889999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|++++.+ +..+..|+..+..... ++|+++|+||+|+........ ...+.+
T Consensus 80 ~d~~~~~s-~~~~~~~~~~i~~~~~----~~piiiv~nK~Dl~~~~~~~~-~~~~~~----------------------- 130 (166)
T cd00877 80 FDVTSRVT-YKNVPNWHRDLVRVCG----NIPIVLCGNKVDIKDRKVKAK-QITFHR----------------------- 130 (166)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhCC----CCcEEEEEEchhcccccCCHH-HHHHHH-----------------------
Confidence 99998665 7778777777765321 499999999999974332211 111111
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....+++|||++|+| ++++++||.+
T Consensus 131 ---------------~~~~~~~e~Sa~~~~~---v~~~f~~l~~ 156 (166)
T cd00877 131 ---------------KKNLQYYEISAKSNYN---FEKPFLWLAR 156 (166)
T ss_pred ---------------HcCCEEEEEeCCCCCC---hHHHHHHHHH
Confidence 1126889999999999 9999999974
No 53
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.96 E-value=1.5e-28 Score=181.77 Aligned_cols=168 Identities=13% Similarity=0.168 Sum_probs=114.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
++||+++|++|||||||+.++..+.+...+ ||++.... .+.+++. .+.+|||||++.+.. ++..+++++|++|+|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~~ilv 79 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR-LRPLSYPQTDVFLIC 79 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhh-hhhhhcCCCCEEEEE
Confidence 479999999999999999999998887665 55544332 3555554 788999999999988 788899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
||++++++ +......|...+... . +++|+++|+||+|+.+..... +.+... .....+..+. .
T Consensus 80 ~d~~~~~s-f~~~~~~~~~~~~~~-~--~~~piilvgnK~Dl~~~~~~~---~~~~~~----~~~~v~~~~~-------~ 141 (174)
T cd01871 80 FSLVSPAS-FENVRAKWYPEVRHH-C--PNTPIILVGTKLDLRDDKDTI---EKLKEK----KLTPITYPQG-------L 141 (174)
T ss_pred EECCCHHH-HHHHHHHHHHHHHHh-C--CCCCEEEEeeChhhccChhhH---HHHhhc----cCCCCCHHHH-------H
Confidence 99999665 888765444333322 1 349999999999996433211 011000 0000000000 0
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+ ..-.+...+++|||++|+| ++++++.+.+
T Consensus 142 ~~----------~~~~~~~~~~e~Sa~~~~~---i~~~f~~l~~ 172 (174)
T cd01871 142 AM----------AKEIGAVKYLECSALTQKG---LKTVFDEAIR 172 (174)
T ss_pred HH----------HHHcCCcEEEEecccccCC---HHHHHHHHHH
Confidence 00 0001125889999999999 9999998864
No 54
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.96 E-value=1.5e-28 Score=182.64 Aligned_cols=116 Identities=18% Similarity=0.183 Sum_probs=94.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
...+||+++|.++||||||++++..+.+...+ ||++..+. .+.+++. .+.+|||+|++.+.. ++..+++++|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~-~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-VRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHh-hhhhhcCCCCEEE
Confidence 45789999999999999999999999987766 66655443 3556665 789999999999988 7888999999999
Q ss_pred EEEeCCCchhhHHHH-HHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 85 YVLDSSTVQKTLRDV-AESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
+|||++++.+ ++.+ ..|+..+.... ++.|+++|+||+||.+
T Consensus 82 lvyDit~~~S-f~~~~~~w~~~i~~~~----~~~piilVgNK~DL~~ 123 (182)
T cd04172 82 ICFDISRPET-LDSVLKKWKGEIQEFC----PNTKMLLVGCKSDLRT 123 (182)
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHHHC----CCCCEEEEeEChhhhc
Confidence 9999999665 8887 56665554321 3489999999999964
No 55
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=1.6e-28 Score=188.19 Aligned_cols=115 Identities=19% Similarity=0.187 Sum_probs=93.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
..+||+++|++|||||||+++|..+.|...+ ||++..+.. +.+++. .+.+|||+|++.|.. +...+++++|++|+
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~-~~~~~~~~ad~vIl 90 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDN-VRPLCYSDSDAVLL 90 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHH-HHHHHcCCCcEEEE
Confidence 4679999999999999999999999987766 676655432 556655 899999999999988 78889999999999
Q ss_pred EEeCCCchhhHHHH-HHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 86 VLDSSTVQKTLRDV-AESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 86 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
|||++++.+ +..+ ..|+..+.... ++.|+++|+||+||..
T Consensus 91 VyDit~~~S-f~~~~~~w~~~i~~~~----~~~piilVgNK~DL~~ 131 (232)
T cd04174 91 CFDISRPET-VDSALKKWKAEIMDYC----PSTRILLIGCKTDLRT 131 (232)
T ss_pred EEECCChHH-HHHHHHHHHHHHHHhC----CCCCEEEEEECccccc
Confidence 999999665 7764 56666554321 2489999999999964
No 56
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=1.3e-28 Score=188.23 Aligned_cols=154 Identities=12% Similarity=0.170 Sum_probs=119.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEE--ecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFT--YEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~--~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|.+|||||||+++++.+.+...+ ||++....... .++. .+.+|||+|++.+.. ++..++++++++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~~ 89 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCA 89 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhh-hhHHHcccccEE
Confidence 56789999999999999999999998886654 77776655443 3433 899999999999988 788899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
|+|||+++..+ +..+..|+..+.... .++|+++|+||+|+.......+.. .+.+
T Consensus 90 ilvfD~~~~~s-~~~i~~w~~~i~~~~----~~~piilvgNK~Dl~~~~v~~~~~-~~~~-------------------- 143 (219)
T PLN03071 90 IIMFDVTARLT-YKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKAKQV-TFHR-------------------- 143 (219)
T ss_pred EEEEeCCCHHH-HHHHHHHHHHHHHhC----CCCcEEEEEEchhhhhccCCHHHH-HHHH--------------------
Confidence 99999999655 888888877776431 349999999999996432211111 1111
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+.+++|||++|.| ++++++||.+
T Consensus 144 ------------------~~~~~~~e~SAk~~~~---i~~~f~~l~~ 169 (219)
T PLN03071 144 ------------------KKNLQYYEISAKSNYN---FEKPFLYLAR 169 (219)
T ss_pred ------------------hcCCEEEEcCCCCCCC---HHHHHHHHHH
Confidence 1126789999999999 9999999874
No 57
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=2.6e-28 Score=178.80 Aligned_cols=157 Identities=24% Similarity=0.386 Sum_probs=120.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~ 91 (211)
.|+++|++|||||||++++.++.+...+ ||++.....+..++..+.+||+||+..++. ++..+++++|++++|+|+++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~ad~ii~V~D~t~ 79 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRK-YWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhH-HHHHHHhhCCEEEEEEECCC
Confidence 3799999999999999999988776554 777776666666666999999999999988 79999999999999999999
Q ss_pred chhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCC
Q psy1914 92 VQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGN 171 (211)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (211)
+.+ +.....|+..++... .++|+++|+||+|+...+....+...+. +..+ ..
T Consensus 80 ~~s-~~~~~~~l~~~~~~~----~~~piilv~NK~Dl~~~~~~~~i~~~~~--~~~~--~~------------------- 131 (164)
T cd04162 80 SER-LPLARQELHQLLQHP----PDLPLVVLANKQDLPAARSVQEIHKELE--LEPI--AR------------------- 131 (164)
T ss_pred HHH-HHHHHHHHHHHHhCC----CCCcEEEEEeCcCCcCCCCHHHHHHHhC--Chhh--cC-------------------
Confidence 664 778888888876532 3499999999999987765554333221 1100 00
Q ss_pred CCCCeeecCCCCcEEEEEEeeec------CCCccchHHHHHHHhhC
Q psy1914 172 PDKDFEFSDLYNQVSFCDTTGLD------SASEYDVEQLQDWMVTL 211 (211)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~Sa~t------g~g~~~i~~l~~~i~~l 211 (211)
...+.+++|||++ ++| ++++++.+..+
T Consensus 132 ----------~~~~~~~~~Sa~~~~s~~~~~~---v~~~~~~~~~~ 164 (164)
T cd04162 132 ----------GRRWILQGTSLDDDGSPSRMEA---VKDLLSQLINL 164 (164)
T ss_pred ----------CCceEEEEeeecCCCChhHHHH---HHHHHHHHhcC
Confidence 1236677788777 999 99999988654
No 58
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.96 E-value=4.3e-28 Score=177.59 Aligned_cols=156 Identities=16% Similarity=0.283 Sum_probs=116.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||+++++++.+...+ ||++.... .+..++. .+.+|||||++.+.. ++..+++++|++|+|
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~~ilv 79 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLE-VRNEFYKDTQGVLLV 79 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHH-HHHHHhccCCEEEEE
Confidence 58999999999999999999999886655 56665443 3555554 889999999999887 788899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCc--CCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQV--QSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|++++.+ +.....|+..+.+...- ...+.|+++|+||+|+.+.... .+....+.+.
T Consensus 80 ~D~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------------------- 139 (168)
T cd04119 80 YDVTDRQS-FEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAES------------------- 139 (168)
T ss_pred EECCCHHH-HHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHH-------------------
Confidence 99999655 77777777776543211 0134899999999999743321 1111111111
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+++++||++|+| +++++++|.+
T Consensus 140 -------------------~~~~~~~~Sa~~~~g---i~~l~~~l~~ 164 (168)
T cd04119 140 -------------------KGFKYFETSACTGEG---VNEMFQTLFS 164 (168)
T ss_pred -------------------cCCeEEEEECCCCCC---HHHHHHHHHH
Confidence 115789999999999 9999999874
No 59
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.96 E-value=2.9e-28 Score=178.05 Aligned_cols=155 Identities=15% Similarity=0.260 Sum_probs=117.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
.+||+++|++|+|||||+++++++.+...+ +|++... ..+.+++. .+.+|||||++.+.. ++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSA-MREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhH-HHHHHHhhCCEEEEE
Confidence 579999999999999999999988876555 4444322 23456664 688999999999988 788899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++.+ +.....|+..+.+... ..++|+++|+||+|+........ ....+.+.
T Consensus 81 ~d~~~~~s-~~~~~~~~~~~~~~~~--~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~--------------------- 136 (164)
T cd04145 81 FSVTDRGS-FEEVDKFHTQILRVKD--RDEFPMILVGNKADLEHQRKVSREEGQELARK--------------------- 136 (164)
T ss_pred EECCCHHH-HHHHHHHHHHHHHHhC--CCCCCEEEEeeCccccccceecHHHHHHHHHH---------------------
Confidence 99999665 8888888777765322 23489999999999976543221 11111111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++++||++|+| +++++++|.+
T Consensus 137 -----------------~~~~~~~~Sa~~~~~---i~~l~~~l~~ 161 (164)
T cd04145 137 -----------------LKIPYIETSAKDRLN---VDKAFHDLVR 161 (164)
T ss_pred -----------------cCCcEEEeeCCCCCC---HHHHHHHHHH
Confidence 115789999999999 9999999874
No 60
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.96 E-value=4.8e-28 Score=177.80 Aligned_cols=154 Identities=22% Similarity=0.275 Sum_probs=119.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
.+||+++|++|||||||++++.++.+...+ ||.+... ..+.+++. .+.+|||||++.+.. ++..+++++|++++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-~~~~~~~~ad~~i~ 81 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRT-ITTAYYRGAMGIIL 81 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHH-HHHHHhCCCCEEEE
Confidence 479999999999999999999999887665 6665543 34566665 789999999999888 68888999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++++ +..+..|+..+.... ..+.|+++|+||+|+.+.+... +....+.+..
T Consensus 82 v~d~~~~~s-~~~~~~~~~~i~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~------------------- 138 (167)
T cd01867 82 VYDITDEKS-FENIRNWMRNIEEHA---SEDVERMLVGNKCDMEEKRVVSKEEGEALADEY------------------- 138 (167)
T ss_pred EEECcCHHH-HHhHHHHHHHHHHhC---CCCCcEEEEEECcccccccCCCHHHHHHHHHHc-------------------
Confidence 999998665 888888877775432 2348999999999998654321 1111121111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++|||++|.| +++++++|.+
T Consensus 139 -------------------~~~~~~~Sa~~~~~---v~~~~~~i~~ 162 (167)
T cd01867 139 -------------------GIKFLETSAKANIN---VEEAFFTLAK 162 (167)
T ss_pred -------------------CCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 15789999999999 9999999875
No 61
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.96 E-value=3.5e-28 Score=179.32 Aligned_cols=162 Identities=20% Similarity=0.344 Sum_probs=126.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
..+.++|+++|++|||||||++++.+..+....||.+.+...+.+++..+.+||+||+..+.. .+..+++.++++++|+
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~~~ii~v~ 89 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRP-YWRNYFENTDCLIYVI 89 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHH-HHHHHhcCCCEEEEEE
Confidence 355799999999999999999999998776666888888888888888999999999998887 6888889999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|+++..+ +.....++..++......+ +|+++++||+|+.......++.+. ++. . .
T Consensus 90 D~~~~~~-~~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~~~~~i~~~----l~~---~---~------------ 144 (173)
T cd04155 90 DSADKKR-LEEAGAELVELLEEEKLAG--VPVLVFANKQDLATAAPAEEIAEA----LNL---H---D------------ 144 (173)
T ss_pred eCCCHHH-HHHHHHHHHHHHhChhhcC--CCEEEEEECCCCccCCCHHHHHHH----cCC---c---c------------
Confidence 9998554 7777777777765433333 999999999999765544332221 110 0 0
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-....+++++|||++|+| ++++++||.+
T Consensus 145 ------------~~~~~~~~~~~Sa~~~~g---i~~~~~~l~~ 172 (173)
T cd04155 145 ------------LRDRTWHIQACSAKTGEG---LQEGMNWVCK 172 (173)
T ss_pred ------------cCCCeEEEEEeECCCCCC---HHHHHHHHhc
Confidence 002336788999999999 9999999975
No 62
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.96 E-value=4.2e-28 Score=177.37 Aligned_cols=154 Identities=18% Similarity=0.262 Sum_probs=115.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee-eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN-VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~-~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
+||+++|++|||||||+++++++.+...+ +|+... ...+.+++. .+.+|||||++++.. ++..++++++++++|+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSA-MRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchH-HHHHHHhhCCEEEEEE
Confidence 48999999999999999999998876655 343322 233455554 788999999999988 7888999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
|++++++ ++....|+..+...... .++|+++|+||+|+...+... +....+.+..
T Consensus 80 d~~~~~s-~~~~~~~~~~i~~~~~~--~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~--------------------- 135 (164)
T smart00173 80 SITDRQS-FEEIKKFREQILRVKDR--DDVPIVLVGNKCDLESERVVSTEEGKELARQW--------------------- 135 (164)
T ss_pred ECCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEECccccccceEcHHHHHHHHHHc---------------------
Confidence 9998655 77777777666543222 248999999999997644322 1111122111
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++|||++|.| +++++++|.+
T Consensus 136 -----------------~~~~~~~Sa~~~~~---i~~l~~~l~~ 159 (164)
T smart00173 136 -----------------GCPFLETSAKERVN---VDEAFYDLVR 159 (164)
T ss_pred -----------------CCEEEEeecCCCCC---HHHHHHHHHH
Confidence 16789999999999 9999999864
No 63
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.96 E-value=3e-29 Score=183.34 Aligned_cols=175 Identities=46% Similarity=0.724 Sum_probs=123.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEe---cCceEEEEECCCchhhhhhhHHH--hhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTY---EKKNIKIVDLPGEDRLRNKFFDQ--YKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~~--~~~~~d~ii 84 (211)
++..|+++|++|||||+|+.+|..+...++.+++..+. .+.+ .+..+.++|+|||++.+..+... +...+.+||
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 45679999999999999999999998888887774444 3444 33489999999999988866665 578899999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
||+|++.....+.++.++++.++.........+|++|++||.|+..+.....+...++++++.++..+..++.+.+.+.+
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei~~lr~tr~~~l~~~d~~~~ 160 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEIDKLRKTRSKSLESVDEDDD 160 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHHHHHHHCHHHHHH-------
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 99999865556888999999998876655567999999999999999999999999999999999999999888877777
Q ss_pred cccccCCCCCCeeecCCCCcE
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQV 185 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~ 185 (211)
...+++..++.|.|++++.++
T Consensus 161 ~~~~lg~~g~~F~F~~L~~~V 181 (181)
T PF09439_consen 161 ENEFLGKEGEDFTFEQLENNV 181 (181)
T ss_dssp ---TTS-TTS---GGGSSS-E
T ss_pred cccccCCCCCCcchhhccCCC
Confidence 778999999999999998764
No 64
>KOG0098|consensus
Probab=99.96 E-value=1.6e-28 Score=175.48 Aligned_cols=154 Identities=18% Similarity=0.229 Sum_probs=127.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+|++++|+.|||||+|+.+++.+.|.+.+ .|+|...+ .++++++ ++++|||+|++.|++ ....||+++.++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frs-v~~syYr~a~Ga 82 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRS-VTRSYYRGAAGA 82 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHH-HHHHHhccCcce
Confidence 45689999999999999999999999997766 57776655 4788887 899999999999999 799999999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHH-HHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKT-LLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|||++..++ |.....|+.++.++. .++..+++++||+||...+.+...+. .+.++-.
T Consensus 83 lLVydit~r~s-F~hL~~wL~D~rq~~---~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehg---------------- 142 (216)
T KOG0098|consen 83 LLVYDITRRES-FNHLTSWLEDARQHS---NENMVIMLIGNKSDLEARREVSKEEGEAFAREHG---------------- 142 (216)
T ss_pred EEEEEccchhh-HHHHHHHHHHHHHhc---CCCcEEEEEcchhhhhccccccHHHHHHHHHHcC----------------
Confidence 99999998665 999999999998764 24589999999999998877543332 2332222
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHH
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWM 208 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i 208 (211)
..+.++||+|++| ++|+|.-+
T Consensus 143 ----------------------LifmETSakt~~~---VEEaF~nt 163 (216)
T KOG0098|consen 143 ----------------------LIFMETSAKTAEN---VEEAFINT 163 (216)
T ss_pred ----------------------ceeehhhhhhhhh---HHHHHHHH
Confidence 5677999999999 99998654
No 65
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.96 E-value=5.7e-28 Score=177.09 Aligned_cols=153 Identities=27% Similarity=0.320 Sum_probs=117.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||++++.++.+...+ +|.+... ..+.+++. .+.+||+||++.+.. .+..+++++|++++|
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~ii~v 81 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT-ITSSYYRGAHGIIIV 81 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHH-HHHHHhCcCCEEEEE
Confidence 68999999999999999999998876554 5555433 34566654 789999999999988 688899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++++ +..+..|+..+.... ..+.|+++|+||+|+....... +....+.+.
T Consensus 82 ~d~~~~~s-~~~l~~~~~~~~~~~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~--------------------- 136 (166)
T cd01869 82 YDVTDQES-FNNVKQWLQEIDRYA---SENVNKLLVGNKCDLTDKRVVDYSEAQEFADE--------------------- 136 (166)
T ss_pred EECcCHHH-HHhHHHHHHHHHHhC---CCCCcEEEEEEChhcccccCCCHHHHHHHHHH---------------------
Confidence 99999665 888888877765422 2348999999999997654332 111222211
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++++||++|+| +++++++|.+
T Consensus 137 -----------------~~~~~~~~Sa~~~~~---v~~~~~~i~~ 161 (166)
T cd01869 137 -----------------LGIPFLETSAKNATN---VEQAFMTMAR 161 (166)
T ss_pred -----------------cCCeEEEEECCCCcC---HHHHHHHHHH
Confidence 126889999999999 9999999865
No 66
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.96 E-value=7.2e-28 Score=181.76 Aligned_cols=155 Identities=19% Similarity=0.260 Sum_probs=119.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|.++.+...+ ||++..+. .+.+++. .+.+||+||++.+.. ++..++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-~~~~~~~~a~~i 82 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRT-ITSTYYRGTHGV 82 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHH-HHHHHhCCCcEE
Confidence 34689999999999999999999998886554 66665443 4555554 788999999999988 788899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++++ +..+..|+..+.... ...|+++|+||+|+.+..... +....+.+.
T Consensus 83 ilv~D~~~~~s-~~~~~~~~~~i~~~~----~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~------------------ 139 (199)
T cd04110 83 IVVYDVTNGES-FVNVKRWLQEIEQNC----DDVCKVLVGNKNDDPERKVVETEDAYKFAGQ------------------ 139 (199)
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHhC----CCCCEEEEEECcccccccccCHHHHHHHHHH------------------
Confidence 99999999665 888888887765432 248999999999997654432 111112111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++.++++||++|.| ++++++||.+
T Consensus 140 --------------------~~~~~~e~Sa~~~~g---i~~lf~~l~~ 164 (199)
T cd04110 140 --------------------MGISLFETSAKENIN---VEEMFNCITE 164 (199)
T ss_pred --------------------cCCEEEEEECCCCcC---HHHHHHHHHH
Confidence 116789999999999 9999999875
No 67
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.96 E-value=4.1e-28 Score=185.04 Aligned_cols=116 Identities=17% Similarity=0.206 Sum_probs=95.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
++||+++|++|||||||+++|..+.+...+ ||++..+. .+.+++. .+.+|||+|++.|.. +++.+++++|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~-l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDN-VRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHH-HhHHhccCCCEEEEE
Confidence 479999999999999999999999988766 67766554 3566665 788999999999988 788899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
||++++++ ++.+..+|...+... . ++.|+++|+||+||...
T Consensus 80 fdis~~~S-f~~i~~~w~~~~~~~-~--~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 80 FDISRPET-LDSVLKKWQGETQEF-C--PNAKVVLVGCKLDMRTD 120 (222)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhh-C--CCCCEEEEEECcccccc
Confidence 99999765 888866665544332 1 34999999999999654
No 68
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.96 E-value=6.8e-28 Score=177.35 Aligned_cols=160 Identities=18% Similarity=0.219 Sum_probs=118.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||++++..+.+...+ ++.+... ..+.+++. .+.+||+||++++.. ++..+++++|++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~~d~~ 81 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRS-LRTPFYRGSDCC 81 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHH-hHHHHhcCCCEE
Confidence 35689999999999999999999998886544 5665543 34556555 788999999999988 788899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcC-CCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQ-SSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ ++....|...++...... ..++|+++|+||+|+.......+....+.+..
T Consensus 82 i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----------------- 143 (170)
T cd04116 82 LLTFAVDDSQS-FQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCREN----------------- 143 (170)
T ss_pred EEEEECCCHHH-HHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHC-----------------
Confidence 99999998655 777777777666532211 23589999999999973322222122221111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+++++||++|+| ++++++++.+
T Consensus 144 --------------------~~~~~~e~Sa~~~~~---v~~~~~~~~~ 168 (170)
T cd04116 144 --------------------GDYPYFETSAKDATN---VAAAFEEAVR 168 (170)
T ss_pred --------------------CCCeEEEEECCCCCC---HHHHHHHHHh
Confidence 114789999999999 9999999874
No 69
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=7.1e-28 Score=176.48 Aligned_cols=156 Identities=22% Similarity=0.241 Sum_probs=118.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..+||+++|++|||||||++++..+.+...+ +|.+. ....+.+++. .+.+|||||++.+.. ++..+++.+|+++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~~d~~l 80 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRT-ITQSYYRSANGAI 80 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHH-HHHHHhccCCEEE
Confidence 3589999999999999999999998886655 45443 3345666664 789999999999988 6888999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ +.....|+..+.... ..++|+++|+||+|+...+... .....+.+..
T Consensus 81 lv~d~~~~~s-~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~------------------ 138 (165)
T cd01864 81 IAYDITRRSS-FESVPHWIEEVEKYG---ASNVVLLLIGNKCDLEEQREVLFEEACTLAEKN------------------ 138 (165)
T ss_pred EEEECcCHHH-HHhHHHHHHHHHHhC---CCCCcEEEEEECcccccccccCHHHHHHHHHHc------------------
Confidence 9999999665 888888877775432 2348999999999997654321 1111222111
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++||++|+| +++++++|.+
T Consensus 139 -------------------~~~~~~e~Sa~~~~~---v~~~~~~l~~ 163 (165)
T cd01864 139 -------------------GMLAVLETSAKESQN---VEEAFLLMAT 163 (165)
T ss_pred -------------------CCcEEEEEECCCCCC---HHHHHHHHHH
Confidence 114679999999999 9999999875
No 70
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=8.2e-28 Score=182.92 Aligned_cols=155 Identities=19% Similarity=0.278 Sum_probs=119.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE--EEec-Cc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN--FTYE-KK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~--~~~~-~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+||+++|++|||||||+++|.++.+...+ ||++..... +.+. +. .+.+|||||++.+.. ++..+++++|+++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~ii 80 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRS-ITRSYYRNSVGVL 80 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHH-HHHHHhcCCcEEE
Confidence 589999999999999999999998886654 666654433 4443 33 789999999999988 7888999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|||++++++ +..+..|+..+...... ...|+++|+||+|+....... +....+.+..
T Consensus 81 lv~D~~~~~S-f~~l~~~~~~i~~~~~~--~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~------------------ 139 (211)
T cd04111 81 LVFDITNRES-FEHVHDWLEEARSHIQP--HRPVFILVGHKCDLESQRQVTREEAEKLAKDL------------------ 139 (211)
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHhcCC--CCCeEEEEEEccccccccccCHHHHHHHHHHh------------------
Confidence 9999999665 88888888887654322 237899999999997644322 2222222211
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+++|||++|+| +++++++|.+
T Consensus 140 --------------------~~~~~e~Sak~g~~---v~e~f~~l~~ 163 (211)
T cd04111 140 --------------------GMKYIETSARTGDN---VEEAFELLTQ 163 (211)
T ss_pred --------------------CCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 16889999999999 9999999975
No 71
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.96 E-value=1.1e-27 Score=173.40 Aligned_cols=157 Identities=25% Similarity=0.397 Sum_probs=121.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCc
Q psy1914 14 VLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTV 92 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~ 92 (211)
|+++|++|||||||++++.+..+...+ ||.+.+...+..++..+.+||+||+..++. .+..+++.+|++++|+|+++.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii~v~d~~~~ 80 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRS-MWERYCRGVNAIVYVVDAADR 80 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHH-HHHHHHhcCCEEEEEEECCCH
Confidence 789999999999999999998876544 777777777777777899999999999988 688999999999999999885
Q ss_pred hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCC
Q psy1914 93 QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNP 172 (211)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (211)
.. +.....++..++......+ +|+++|+||+|+.+.....+....+ .. ..
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~D~~~~~~~~~~~~~~----~~------~~----------------- 130 (159)
T cd04159 81 TA-LEAAKNELHDLLEKPSLEG--IPLLVLGNKNDLPGALSVDELIEQM----NL------KS----------------- 130 (159)
T ss_pred HH-HHHHHHHHHHHHcChhhcC--CCEEEEEeCccccCCcCHHHHHHHh----Cc------cc-----------------
Confidence 54 7777778888776433333 8999999999997654433222111 10 00
Q ss_pred CCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 173 DKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
.....++++++||++|.| ++++++||.++
T Consensus 131 -------~~~~~~~~~~~Sa~~~~g---i~~l~~~l~~~ 159 (159)
T cd04159 131 -------ITDREVSCYSISCKEKTN---IDIVLDWLIKH 159 (159)
T ss_pred -------ccCCceEEEEEEeccCCC---hHHHHHHHhhC
Confidence 001237889999999999 99999999875
No 72
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.96 E-value=1.2e-27 Score=174.51 Aligned_cols=152 Identities=14% Similarity=0.218 Sum_probs=116.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEec--Cc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYE--KK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~--~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+||+++|++|+|||||+++++++.+...+ ||++..+. .+.++ +. .+.+|||||++.+.. ++..+++++|+++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~v 79 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDA-ITKAYYRGAQACI 79 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHH-hHHHHhcCCCEEE
Confidence 58999999999999999999998876554 66665543 34454 33 799999999999988 7888999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++++ +.....|+..+... . .++|+++|+||+|+....... +....+.+.++
T Consensus 80 ~v~d~~~~~s-~~~l~~~~~~~~~~--~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~----------------- 137 (162)
T cd04106 80 LVFSTTDRES-FEAIESWKEKVEAE--C--GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQ----------------- 137 (162)
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHh--C--CCCCEEEEEEChhcccccCCCHHHHHHHHHHcC-----------------
Confidence 9999999665 77777777666432 2 249999999999997654422 11222222111
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|.| ++++++||.+
T Consensus 138 ---------------------~~~~~~Sa~~~~~---v~~l~~~l~~ 160 (162)
T cd04106 138 ---------------------LPLFRTSVKDDFN---VTELFEYLAE 160 (162)
T ss_pred ---------------------CeEEEEECCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999875
No 73
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=3.7e-28 Score=181.92 Aligned_cols=166 Identities=14% Similarity=0.120 Sum_probs=115.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
.||+++|++|||||||++++..+.+...+ ||.+..+. .+..++. .+.+|||+|++.+.. ++..++++++++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~-l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDR-LRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccc-cccccccCCCEEEEEE
Confidence 48999999999999999999999987665 66655443 3455554 789999999999887 7888899999999999
Q ss_pred eCCCchhhHHHHHH-HHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 88 DSSTVQKTLRDVAE-SLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 88 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
|++++.+ ++.+.. |+..+... . ++.|+++|+||+|+............... ...+.... .
T Consensus 80 dv~~~~s-f~~~~~~~~~~i~~~--~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~-------~~v~~~~~-------~ 140 (189)
T cd04134 80 SVDSPDS-LENVESKWLGEIREH--C--PGVKLVLVALKCDLREARNERDDLQRYGK-------HTISYEEG-------L 140 (189)
T ss_pred ECCCHHH-HHHHHHHHHHHHHHh--C--CCCCEEEEEEChhhccChhhHHHHhhccC-------CCCCHHHH-------H
Confidence 9999665 777654 55555432 1 24999999999999765443322111000 00000000 0
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++ .-.+.+.+++|||++|+| ++++++||.+
T Consensus 141 ~~~----------~~~~~~~~~e~SAk~~~~---v~e~f~~l~~ 171 (189)
T cd04134 141 AVA----------KRINALRYLECSAKLNRG---VNEAFTEAAR 171 (189)
T ss_pred HHH----------HHcCCCEEEEccCCcCCC---HHHHHHHHHH
Confidence 000 001226789999999999 9999999975
No 74
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.96 E-value=1.9e-27 Score=174.07 Aligned_cols=154 Identities=23% Similarity=0.314 Sum_probs=117.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccc-ccccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFES-CTSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
.+||+++|++|||||||++++.++.+... .||.+.... .+..++. .+.+||+||++.+.. ++..+++.++++++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~~~~i~ 81 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRA-ITSAYYRGAVGALL 81 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHH-HHHHHHCCCCEEEE
Confidence 36999999999999999999999887544 467665443 3555554 789999999999888 68888999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++.+ +..+..|+..+.... ..++|+++|+||+|+...+... +....+...
T Consensus 82 v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~-------------------- 137 (165)
T cd01868 82 VYDITKKQT-FENVERWLKELRDHA---DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEK-------------------- 137 (165)
T ss_pred EEECcCHHH-HHHHHHHHHHHHHhC---CCCCeEEEEEECccccccccCCHHHHHHHHHH--------------------
Confidence 999998665 888888877766532 1248999999999997654321 111111110
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.+++|||++|+| +++++++|.+
T Consensus 138 ------------------~~~~~~~~Sa~~~~~---v~~l~~~l~~ 162 (165)
T cd01868 138 ------------------NGLSFIETSALDGTN---VEEAFKQLLT 162 (165)
T ss_pred ------------------cCCEEEEEECCCCCC---HHHHHHHHHH
Confidence 126789999999999 9999999864
No 75
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=1.7e-27 Score=178.60 Aligned_cols=153 Identities=22% Similarity=0.251 Sum_probs=116.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccc-c-ccccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFE-S-CTSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~-~-~~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+||+++|++|||||||++++..+.+.. . .+|++.... .+.+++. .+.+|||||++.+.. .+..+++.+|++++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~~i~ 79 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRS-VTHAYYRDAHALLL 79 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHH-hhHHHccCCCEEEE
Confidence 589999999999999999999988753 3 356654443 3566664 889999999999988 68888999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++.+ ++.+..|+..+.... ..++|+++|+||+|+...+... +....+.+..
T Consensus 80 v~D~~~~~s-~~~~~~~~~~i~~~~---~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~------------------- 136 (191)
T cd04112 80 LYDITNKAS-FDNIRAWLTEIKEYA---QEDVVIMLLGNKADMSGERVVKREDGERLAKEY------------------- 136 (191)
T ss_pred EEECCCHHH-HHHHHHHHHHHHHhC---CCCCcEEEEEEcccchhccccCHHHHHHHHHHc-------------------
Confidence 999998654 888888777765432 1248999999999997543321 1122222111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++++||++|+| +++++++|.+
T Consensus 137 -------------------~~~~~e~Sa~~~~~---v~~l~~~l~~ 160 (191)
T cd04112 137 -------------------GVPFMETSAKTGLN---VELAFTAVAK 160 (191)
T ss_pred -------------------CCeEEEEeCCCCCC---HHHHHHHHHH
Confidence 15789999999999 9999999975
No 76
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.96 E-value=2.3e-27 Score=172.95 Aligned_cols=153 Identities=22% Similarity=0.266 Sum_probs=115.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||+++|.++.+...+ ++.+.... .+.+++. .+.+||+||++.+.. .+..+++++|++++|
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-~~~~~~~~~~~~i~v 79 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRS-VTRSYYRGAAGALLV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHH-hHHHHhcCCCEEEEE
Confidence 58999999999999999999998875544 45544333 3455554 788999999999988 688889999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++.+ +..+..|+..+... ..+++|+++|+||+|+...... .+....+.+..
T Consensus 80 ~d~~~~~s-~~~~~~~~~~~~~~---~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-------------------- 135 (161)
T cd04113 80 YDITNRTS-FEALPTWLSDARAL---ASPNIVVILVGNKSDLADQREVTFLEASRFAQEN-------------------- 135 (161)
T ss_pred EECCCHHH-HHHHHHHHHHHHHh---CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHc--------------------
Confidence 99999665 77888887766432 2245999999999999764332 11111122111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++||++|+| ++++++|+.+
T Consensus 136 ------------------~~~~~~~Sa~~~~~---i~~~~~~~~~ 159 (161)
T cd04113 136 ------------------GLLFLETSALTGEN---VEEAFLKCAR 159 (161)
T ss_pred ------------------CCEEEEEECCCCCC---HHHHHHHHHH
Confidence 16789999999999 9999999864
No 77
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.96 E-value=2.8e-27 Score=174.20 Aligned_cols=156 Identities=15% Similarity=0.237 Sum_probs=117.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
.+||+++|++|||||||+++++.+.+...+ ++.+... ..+.+++. .+.+||+||++.++..++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 479999999999999999999998876544 5555433 34566664 889999999998875468888999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++.+ +.....|+..+...... .++|+++|+||+|+...+... .....+.+.
T Consensus 82 v~d~~~~~s-~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-------------------- 138 (170)
T cd04115 82 VYDVTNMAS-FHSLPSWIEECEQHSLP--NEVPRILVGNKCDLREQIQVPTDLAQRFADA-------------------- 138 (170)
T ss_pred EEECCCHHH-HHhHHHHHHHHHHhcCC--CCCCEEEEEECccchhhcCCCHHHHHHHHHH--------------------
Confidence 999998665 88888877776654322 349999999999997665432 222222211
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeec---CCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLD---SASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~t---g~g~~~i~~l~~~i~~ 210 (211)
..+++++|||++ ++| +++++.++.+
T Consensus 139 ------------------~~~~~~e~Sa~~~~~~~~---i~~~f~~l~~ 166 (170)
T cd04115 139 ------------------HSMPLFETSAKDPSENDH---VEAIFMTLAH 166 (170)
T ss_pred ------------------cCCcEEEEeccCCcCCCC---HHHHHHHHHH
Confidence 126789999999 667 9999988763
No 78
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.96 E-value=6.3e-27 Score=170.87 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=117.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccc-cccccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFE-SCTSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
++||+++|++|||||||+++++++.+.. ..++.+... ..+.+++. .+.+||+||++.+.. .+..+++++|++++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~i~ 79 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRS-LAPMYYRGAAAAIV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHH-HHHHHhccCCEEEE
Confidence 4799999999999999999999998866 446666433 34556554 789999999999888 68888999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++++ +.....|+..+..... ..+|+++++||+|+....... +....+....
T Consensus 80 v~d~~~~~s-~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~------------------- 136 (163)
T cd01860 80 VYDITSEES-FEKAKSWVKELQRNAS---PNIIIALVGNKADLESKRQVSTEEAQEYADEN------------------- 136 (163)
T ss_pred EEECcCHHH-HHHHHHHHHHHHHhCC---CCCeEEEEEECccccccCcCCHHHHHHHHHHc-------------------
Confidence 999998665 8888888777765432 349999999999997543211 1111111111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.++++||++|.| +++++++|.+
T Consensus 137 -------------------~~~~~~~Sa~~~~~---v~~l~~~l~~ 160 (163)
T cd01860 137 -------------------GLLFFETSAKTGEN---VNELFTEIAK 160 (163)
T ss_pred -------------------CCEEEEEECCCCCC---HHHHHHHHHH
Confidence 15789999999999 9999999875
No 79
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.96 E-value=6.1e-27 Score=170.62 Aligned_cols=153 Identities=19% Similarity=0.282 Sum_probs=117.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccc-ccccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFES-CTSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
.||+++|++|||||||++++.+..+... .++.+... ..+.+++. .+.+|||||++.+.. ++..+++++|++++|
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~-~~~~~~~~~~~ii~v 79 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRS-LIPSYIRDSSVAVVV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHH-HHHHHhccCCEEEEE
Confidence 4899999999999999999999887544 35555443 34556654 689999999999988 788899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++++ +.....|+..+..... .+.|+++++||+|+...... .+....+.+..
T Consensus 80 ~d~~~~~s-~~~~~~~~~~~~~~~~---~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~-------------------- 135 (161)
T cd01861 80 YDITNRQS-FDNTDKWIDDVRDERG---NDVIIVLVGNKTDLSDKRQVSTEEGEKKAKEL-------------------- 135 (161)
T ss_pred EECcCHHH-HHHHHHHHHHHHHhCC---CCCEEEEEEEChhccccCccCHHHHHHHHHHh--------------------
Confidence 99998665 8888888887765422 24999999999999644332 22222222111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.++++||++|+| ++++++||.+
T Consensus 136 ------------------~~~~~~~Sa~~~~~---v~~l~~~i~~ 159 (161)
T cd01861 136 ------------------NAMFIETSAKAGHN---VKELFRKIAS 159 (161)
T ss_pred ------------------CCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 16789999999999 9999999975
No 80
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.96 E-value=2.2e-27 Score=178.69 Aligned_cols=146 Identities=16% Similarity=0.262 Sum_probs=113.0
Q ss_pred EcCCCCCHHHHHHHHHcCcccccc-cccceeeEE--EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCC
Q psy1914 17 SGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 17 ~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~ 91 (211)
+|.+|||||||+++++.+.+...+ ||++..... +.+++. .+.+|||+|++.+.. ++..++++++++|+|||+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~-l~~~~~~~ad~~ilV~D~t~ 79 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGG-LRDGYYIQGQCAIIMFDVTA 79 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhh-hhHHHhcCCCEEEEEEECCC
Confidence 599999999999999998887654 777766554 344444 899999999999998 78899999999999999999
Q ss_pred chhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCC
Q psy1914 92 VQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGN 171 (211)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (211)
..+ +..+..|+..+.+.. .++|+++|+||+|+.......+.. .+.+
T Consensus 80 ~~S-~~~i~~w~~~i~~~~----~~~piilvgNK~Dl~~~~v~~~~~-~~~~---------------------------- 125 (200)
T smart00176 80 RVT-YKNVPNWHRDLVRVC----ENIPIVLCGNKVDVKDRKVKAKSI-TFHR---------------------------- 125 (200)
T ss_pred hHH-HHHHHHHHHHHHHhC----CCCCEEEEEECcccccccCCHHHH-HHHH----------------------------
Confidence 655 888888777776532 249999999999996432211111 1111
Q ss_pred CCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 172 PDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+.+++|||++|+| |+++|+||.+
T Consensus 126 ----------~~~~~~~e~SAk~~~~---v~~~F~~l~~ 151 (200)
T smart00176 126 ----------KKNLQYYDISAKSNYN---FEKPFLWLAR 151 (200)
T ss_pred ----------HcCCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 1127889999999999 9999999974
No 81
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.96 E-value=2.4e-27 Score=172.60 Aligned_cols=150 Identities=13% Similarity=0.139 Sum_probs=111.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccc-eeeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLK-ENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~-~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
+||+++|++|||||||+.++..+.+...+++++ .....+.+++. .+.+|||+|++.. .+++.+|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~------~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA------QFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCch------hHHhcCCEEEEEEE
Confidence 489999999999999999999988876664433 33345777775 6899999999642 24577999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC--CCHHH-HHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA--KSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
++++.+ ++.+..|+..+....... ++|+++|+||.|+... +.... ....+.+.
T Consensus 75 ~~~~~s-f~~~~~~~~~i~~~~~~~--~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~--------------------- 130 (158)
T cd04103 75 LENEAS-FQTVYNLYHQLSSYRNIS--EIPLILVGTQDAISESNPRVIDDARARQLCAD--------------------- 130 (158)
T ss_pred CCCHHH-HHHHHHHHHHHHHhcCCC--CCCEEEEeeHHHhhhcCCcccCHHHHHHHHHH---------------------
Confidence 999665 888888888877653333 3899999999998532 22111 11111111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+.|++|||++|+| |+++++++.+
T Consensus 131 ----------------~~~~~~~e~SAk~~~~---i~~~f~~~~~ 156 (158)
T cd04103 131 ----------------MKRCSYYETCATYGLN---VERVFQEAAQ 156 (158)
T ss_pred ----------------hCCCcEEEEecCCCCC---HHHHHHHHHh
Confidence 1126889999999999 9999998874
No 82
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.96 E-value=5.7e-27 Score=171.12 Aligned_cols=150 Identities=17% Similarity=0.232 Sum_probs=111.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|.+|||||||++++..+.+.+.+ ++.+.... ...+++. .+.+|||||++.+.. ++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~i~v 79 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT-MHASYYHKAHACILV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhh-hhHHHhCCCCEEEEE
Confidence 58999999999999999999998886554 44443332 2344544 788999999999998 789999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|++++.+ +.....|+..+.+.. +++|+++|+||+|+.... ......+.+
T Consensus 80 ~d~~~~~s-~~~~~~~~~~i~~~~----~~~p~ivv~nK~Dl~~~~--~~~~~~~~~----------------------- 129 (161)
T cd04124 80 FDVTRKIT-YKNLSKWYEELREYR----PEIPCIVVANKIDLDPSV--TQKKFNFAE----------------------- 129 (161)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhC----CCCcEEEEEECccCchhH--HHHHHHHHH-----------------------
Confidence 99998654 777777776665421 248999999999984321 110001110
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++++||++|.| ++++++.+.+
T Consensus 130 ---------------~~~~~~~~~Sa~~~~g---v~~l~~~l~~ 155 (161)
T cd04124 130 ---------------KHNLPLYYVSAADGTN---VVKLFQDAIK 155 (161)
T ss_pred ---------------HcCCeEEEEeCCCCCC---HHHHHHHHHH
Confidence 0115789999999999 9999998864
No 83
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=3.6e-27 Score=176.16 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=112.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEec-Cc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYE-KK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~-~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||+++|.++.+...+ ||++..+. .+... +. .+.+|||||++.+.. ++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDR-LRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHH-HHHHhCCCCCEEEEE
Confidence 58999999999999999999999887655 55554433 34444 33 789999999999988 788889999999999
Q ss_pred EeCCCchhhHHHHHH-HHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-----HHHHHHHHHHHHHHhhhcccccccch
Q psy1914 87 LDSSTVQKTLRDVAE-SLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-----SVVKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
+|++++.+ ++.+.. |+..+... .+++|+++|+||+|+...... ......+....+
T Consensus 80 ~d~~~~~s-~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-------------- 140 (187)
T cd04132 80 YAVDNPTS-LDNVEDKWFPEVNHF----CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQG-------------- 140 (187)
T ss_pred EECCCHHH-HHHHHHHHHHHHHHh----CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcC--------------
Confidence 99999655 777765 44444322 134899999999999654311 111111211111
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++|||++|+| ++++++++.+
T Consensus 141 -----------------------~~~~~e~Sa~~~~~---v~~~f~~l~~ 164 (187)
T cd04132 141 -----------------------AFAYLECSAKTMEN---VEEVFDTAIE 164 (187)
T ss_pred -----------------------CcEEEEccCCCCCC---HHHHHHHHHH
Confidence 02789999999999 9999998864
No 84
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.96 E-value=6.7e-27 Score=171.88 Aligned_cols=154 Identities=19% Similarity=0.235 Sum_probs=116.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
-+||+++|++|||||||++++.++.+...+ ++.+.... .+..++. .+.+||+||++.+.. +...+++.+|++++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~il~ 82 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRS-ITRSYYRGAAGALL 82 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHH-HHHHHhccCCEEEE
Confidence 379999999999999999999998876554 45554433 3455553 789999999999888 67888999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++.+ +..+..|+..+.... .+++|+++|+||+|+....... +....+...
T Consensus 83 v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-------------------- 138 (168)
T cd01866 83 VYDITRRET-FNHLTSWLEDARQHS---NSNMTIMLIGNKCDLESRREVSYEEGEAFAKE-------------------- 138 (168)
T ss_pred EEECCCHHH-HHHHHHHHHHHHHhC---CCCCcEEEEEECcccccccCCCHHHHHHHHHH--------------------
Confidence 999998655 888888887776532 1349999999999997543321 111111111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++||++|+| ++++++++.+
T Consensus 139 ------------------~~~~~~e~Sa~~~~~---i~~~~~~~~~ 163 (168)
T cd01866 139 ------------------HGLIFMETSAKTASN---VEEAFINTAK 163 (168)
T ss_pred ------------------cCCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 115789999999999 9999999865
No 85
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.95 E-value=3.7e-27 Score=182.86 Aligned_cols=158 Identities=11% Similarity=0.269 Sum_probs=117.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce-eeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE-NVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~-~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
+||+++|.+|||||||+++++++.+...+ ||++. ....+++++. .+.+|||+|++.+.. ++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~-~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA-MRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhH-HHHHHhccCCEEEEEE
Confidence 58999999999999999999998887665 55542 3344667665 788999999999887 6777888999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCc------CCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchh
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQV------QSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
|+++..+ ++.+..|+..+...... ...++|+++|+||+|+...+... .+.+.+.+..
T Consensus 80 dv~~~~S-f~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~--~~ei~~~~~~-------------- 142 (247)
T cd04143 80 SLDNRES-FEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQ--RDEVEQLVGG-------------- 142 (247)
T ss_pred eCCCHHH-HHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccC--HHHHHHHHHh--------------
Confidence 9999654 88888887777643211 12349999999999997533221 1122221110
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+.+++|||++|+| +++++++|.+
T Consensus 143 --------------------~~~~~~~evSAktg~g---I~elf~~L~~ 168 (247)
T cd04143 143 --------------------DENCAYFEVSAKKNSN---LDEMFRALFS 168 (247)
T ss_pred --------------------cCCCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 1126789999999999 9999999875
No 86
>KOG0394|consensus
Probab=99.95 E-value=8.6e-28 Score=171.40 Aligned_cols=162 Identities=17% Similarity=0.236 Sum_probs=128.1
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCC
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAK 81 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d 81 (211)
+++.-+||+++|++|+|||||+|++...+|...+ .|++.. ...+.++++ .+.+|||+|+++|.+ +...+++++|
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqs-Lg~aFYRgaD 83 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQS-LGVAFYRGAD 83 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhh-cccceecCCc
Confidence 4466789999999999999999999999997776 566654 445677776 899999999999999 7788999999
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCC-CCCcEEEEEeCCCccCCC--CHHH-HHHHHHHHHHHHhhhcccccc
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQS-SRVNILVCCNKQDQTLAK--SSSV-VKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~--~~~~-~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+.++|+|+.++.+ ++....|-.+++.+....+ ...|++|+|||+|+.+.. .+.. ..+..-
T Consensus 84 cCvlvydv~~~~S-fe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC--------------- 147 (210)
T KOG0394|consen 84 CCVLVYDVNNPKS-FENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWC--------------- 147 (210)
T ss_pred eEEEEeecCChhh-hccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHH---------------
Confidence 9999999999766 9899999888887655443 368999999999997632 2221 111111
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++ -.+++++++|||.+.| +++.|+-+.+
T Consensus 148 ------------~s----------~gnipyfEtSAK~~~N---V~~AFe~ia~ 175 (210)
T KOG0394|consen 148 ------------KS----------KGNIPYFETSAKEATN---VDEAFEEIAR 175 (210)
T ss_pred ------------Hh----------cCCceeEEeccccccc---HHHHHHHHHH
Confidence 11 2348999999999999 9999887653
No 87
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.95 E-value=1.1e-26 Score=169.26 Aligned_cols=154 Identities=19% Similarity=0.263 Sum_probs=116.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccc-cccccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFE-SCTSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||+++|.++.+.. ..|+.+... ..+.+++. .+.+||+||++.+.. .+..+++.+|++++|
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i~v 79 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRT-LTSSYYRGAQGVILV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhh-hhHHHhCCCCEEEEE
Confidence 589999999999999999999988754 345555443 33455553 789999999998887 678889999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|++++.+ +.....|+..+...... .+.|+++|+||+|+.......+....+....
T Consensus 80 ~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~--------------------- 135 (161)
T cd01863 80 YDVTRRDT-FTNLETWLNELETYSTN--NDIVKMLVGNKIDKENREVTREEGLKFARKH--------------------- 135 (161)
T ss_pred EECCCHHH-HHhHHHHHHHHHHhCCC--CCCcEEEEEECCcccccccCHHHHHHHHHHc---------------------
Confidence 99998665 77777777766554322 3499999999999974432222222222111
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++++||++|+| ++++++++.+
T Consensus 136 -----------------~~~~~~~Sa~~~~g---i~~~~~~~~~ 159 (161)
T cd01863 136 -----------------NMLFIETSAKTRDG---VQQAFEELVE 159 (161)
T ss_pred -----------------CCEEEEEecCCCCC---HHHHHHHHHH
Confidence 26789999999999 9999998864
No 88
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.95 E-value=9.3e-27 Score=170.22 Aligned_cols=152 Identities=14% Similarity=0.165 Sum_probs=113.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC--cccccc-cccceeeE--EEEec-C--ceEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS--KYFESC-TSLKENVG--NFTYE-K--KNIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~--~~~~~~-~t~~~~~~--~~~~~-~--~~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
+||+++|++|||||||++++..+ .+...+ +|++.... .+.+. + ..+.+|||||++.+.. ++..+++++|++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~i 79 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSD-MVSNYWESPSVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHH-HHHHHhCCCCEE
Confidence 58999999999999999999864 455555 56665543 24443 2 2899999999999888 788899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHH-HHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVK-TLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +.....|+..+.... .++|+++|+||+|+.+..+..... ..+...
T Consensus 80 i~v~d~~~~~s-~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~------------------ 136 (164)
T cd04101 80 ILVYDVSNKAS-FENCSRWVNKVRTAS----KHMPGVLVGNKMDLADKAEVTDAQAQAFAQA------------------ 136 (164)
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHhC----CCCCEEEEEECcccccccCCCHHHHHHHHHH------------------
Confidence 99999998655 777777776665432 338999999999997654332211 112111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++|||++|.| +++++++|.+
T Consensus 137 --------------------~~~~~~~~Sa~~~~g---i~~l~~~l~~ 161 (164)
T cd04101 137 --------------------NQLKFFKTSALRGVG---YEEPFESLAR 161 (164)
T ss_pred --------------------cCCeEEEEeCCCCCC---hHHHHHHHHH
Confidence 115789999999999 9999999875
No 89
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.95 E-value=6.1e-27 Score=172.06 Aligned_cols=156 Identities=19% Similarity=0.299 Sum_probs=116.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
++||+++|++|||||||++++.++.+...+ ||++... ..+.+++. .+.+|||||++.+.. ++..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTA-MRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchh-hhHHHHhhCCEEEEE
Confidence 478999999999999999999998886655 4544332 33556554 788999999999998 799999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++++ ++....|...+..... ..++|+++++||+|+...+.... ....+.+..
T Consensus 80 ~~~~~~~s-~~~~~~~~~~i~~~~~--~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~-------------------- 136 (168)
T cd04177 80 YSVTSEAS-LNELGELREQVLRIKD--SDNVPMVLVGNKADLEDDRQVSREDGVSLSQQW-------------------- 136 (168)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhhC--CCCCCEEEEEEChhccccCccCHHHHHHHHHHc--------------------
Confidence 99998664 7777777666654322 23499999999999976543221 111111100
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++++||++|.| ++++++||.+
T Consensus 137 -----------------~~~~~~~~SA~~~~~---i~~~f~~i~~ 161 (168)
T cd04177 137 -----------------GNVPFYETSARKRTN---VDEVFIDLVR 161 (168)
T ss_pred -----------------CCceEEEeeCCCCCC---HHHHHHHHHH
Confidence 116789999999999 9999999874
No 90
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=1.1e-26 Score=173.71 Aligned_cols=153 Identities=22% Similarity=0.286 Sum_probs=117.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||++++.++.+...+ +|.+... ..+.+++. .+.+||+||++.+.. .+..+++++|++++|
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~-~~~~~~~~~d~iilv 79 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRS-LNNSYYRGAHGYLLV 79 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHh-hHHHHccCCCEEEEE
Confidence 58999999999999999999999887644 6666443 34566554 778999999999988 688899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
||++++.+ +..+..|+..+.... ...+|+++|+||+|+.+..... .....+.+..
T Consensus 80 ~d~~~~~s-~~~i~~~~~~i~~~~---~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~-------------------- 135 (188)
T cd04125 80 YDVTDQES-FENLKFWINEINRYA---RENVIKVIVANKSDLVNNKVVDSNIAKSFCDSL-------------------- 135 (188)
T ss_pred EECcCHHH-HHHHHHHHHHHHHhC---CCCCeEEEEEECCCCcccccCCHHHHHHHHHHc--------------------
Confidence 99999665 888888777765421 2338999999999997554322 1112222111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++++||++|.| +++++++|.+
T Consensus 136 ------------------~~~~~evSa~~~~~---i~~~f~~l~~ 159 (188)
T cd04125 136 ------------------NIPFFETSAKQSIN---VEEAFILLVK 159 (188)
T ss_pred ------------------CCeEEEEeCCCCCC---HHHHHHHHHH
Confidence 15789999999999 9999999865
No 91
>PLN03110 Rab GTPase; Provisional
Probab=99.95 E-value=1e-26 Score=177.53 Aligned_cols=155 Identities=22% Similarity=0.300 Sum_probs=120.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..+||+++|++|||||||+++|.++.+...+ +|++.+. ..+.+++. .+.+|||||++.+.. ++..+++++++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~~~~~i 89 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA-ITSAYYRGAVGAL 89 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHH-HHHHHhCCCCEEE
Confidence 4589999999999999999999998876444 6776654 34566664 889999999999988 7888999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ ++.+..|+..+.... ..++|+++|+||+|+.+.+... +....+...
T Consensus 90 lv~d~~~~~s-~~~~~~~~~~~~~~~---~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~------------------- 146 (216)
T PLN03110 90 LVYDITKRQT-FDNVQRWLRELRDHA---DSNIVIMMAGNKSDLNHLRSVAEEDGQALAEK------------------- 146 (216)
T ss_pred EEEECCChHH-HHHHHHHHHHHHHhC---CCCCeEEEEEEChhcccccCCCHHHHHHHHHH-------------------
Confidence 9999998654 888888877765432 2349999999999997655432 222222211
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++++||++|+| +++++++|.+
T Consensus 147 -------------------~~~~~~e~SA~~g~~---v~~lf~~l~~ 171 (216)
T PLN03110 147 -------------------EGLSFLETSALEATN---VEKAFQTILL 171 (216)
T ss_pred -------------------cCCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 126899999999999 9999999864
No 92
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.95 E-value=5.8e-27 Score=176.48 Aligned_cols=158 Identities=15% Similarity=0.166 Sum_probs=111.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhh----h---hHHHhhhc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRN----K---FFDQYKSS 79 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~----~---~~~~~~~~ 79 (211)
+||+++|.+|||||||++++.++.+...+ ||++... ..+.+++. .+.+|||||...+.. + ....++++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999998886655 6665433 34566775 788999999754311 0 12234678
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhccccccc
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLED 158 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~ 158 (211)
+|++++|||++++.+ ++.+..|+..+.........++|+++|+||+|+...+.... ....+.++
T Consensus 81 ad~iilv~D~~~~~S-~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~-------------- 145 (198)
T cd04142 81 SRAFILVYDICSPDS-FHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRK-------------- 145 (198)
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHH--------------
Confidence 999999999999665 88888877777654321224499999999999965432211 11111100
Q ss_pred chhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 159 TNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++++++|||++|.| ++++++.+.+
T Consensus 146 -----------------------~~~~~~~e~Sak~g~~---v~~lf~~i~~ 171 (198)
T cd04142 146 -----------------------SWKCGYLECSAKYNWH---ILLLFKELLI 171 (198)
T ss_pred -----------------------hcCCcEEEecCCCCCC---HHHHHHHHHH
Confidence 1227889999999999 9999987753
No 93
>PLN03118 Rab family protein; Provisional
Probab=99.95 E-value=1.6e-26 Score=175.99 Aligned_cols=158 Identities=20% Similarity=0.244 Sum_probs=118.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+..+||+++|++|||||||+++|.++.+....|+.+... ..+.+++. .+.+|||||++.+.. ++..+++++|+++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~~d~~v 90 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT-LTSSYYRNAQGII 90 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHH-HHHHHHhcCCEEE
Confidence 456899999999999999999999988766557766544 34556554 789999999999988 7889999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++++ +.....+|...+.... ...+.|+++|+||+|+....... +....+...
T Consensus 91 lv~D~~~~~s-f~~~~~~~~~~~~~~~-~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~------------------- 149 (211)
T PLN03118 91 LVYDVTRRET-FTNLSDVWGKEVELYS-TNQDCVKMLVGNKVDRESERDVSREEGMALAKE------------------- 149 (211)
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccCccCHHHHHHHHHH-------------------
Confidence 9999999665 7777776655543211 11238999999999997654432 111111111
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.+++|||++|+| +++++++|.+
T Consensus 150 -------------------~~~~~~e~SAk~~~~---v~~l~~~l~~ 174 (211)
T PLN03118 150 -------------------HGCLFLECSAKTREN---VEQCFEELAL 174 (211)
T ss_pred -------------------cCCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 115789999999999 9999999874
No 94
>KOG0080|consensus
Probab=99.95 E-value=2e-27 Score=165.85 Aligned_cols=155 Identities=19% Similarity=0.232 Sum_probs=121.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccc-cc--eeeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCTS-LK--ENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t-~~--~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.-+||+++|.+|+|||||+-++....|.+..|+ +| +.+..+.+++. ++.+|||+|+++|+. +.+.||+++.++|
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRt-LTpSyyRgaqGiI 88 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRT-LTPSYYRGAQGII 88 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhc-cCHhHhccCceeE
Confidence 458999999999999999999999999777765 55 45566788877 889999999999999 8999999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++..++ +.....|+.++-.... ++++..++|+||+|....+.+.. .--.+.++.+
T Consensus 89 lVYDVT~Rdt-f~kLd~W~~Eld~Yst--n~diikmlVgNKiDkes~R~V~reEG~kfAr~h~----------------- 148 (209)
T KOG0080|consen 89 LVYDVTSRDT-FVKLDIWLKELDLYST--NPDIIKMLVGNKIDKESERVVDREEGLKFARKHR----------------- 148 (209)
T ss_pred EEEEccchhh-HHhHHHHHHHHHhhcC--CccHhHhhhcccccchhcccccHHHHHHHHHhhC-----------------
Confidence 9999998665 8788778777754433 34488999999999875443321 1112333333
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
.-|++|||||.+| +...|+-+.
T Consensus 149 ---------------------~LFiE~SAkt~~~---V~~~Feelv 170 (209)
T KOG0080|consen 149 ---------------------CLFIECSAKTREN---VQCCFEELV 170 (209)
T ss_pred ---------------------cEEEEcchhhhcc---HHHHHHHHH
Confidence 7789999999999 987776554
No 95
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.95 E-value=2.1e-26 Score=168.06 Aligned_cols=154 Identities=21% Similarity=0.298 Sum_probs=115.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
+||+++|++|||||||+++++...+...+ ++++..... ..+++. .+.+||+||+..+.. ++..+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAA-IRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhH-HHHHHhhcCCEEEEEE
Confidence 58999999999999999999998876555 444433332 455544 789999999999888 6888999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC-HHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS-SSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
|++++.+ +.....|+..+...... .++|+++|+||+|+..... .......+.+.+
T Consensus 80 d~~~~~s-~~~~~~~~~~~~~~~~~--~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~--------------------- 135 (164)
T cd04139 80 SITDMES-FTATAEFREQILRVKDD--DNVPLLLVGNKCDLEDKRQVSSEEAANLARQW--------------------- 135 (164)
T ss_pred ECCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEEccccccccccCHHHHHHHHHHh---------------------
Confidence 9988654 77788887777754322 3499999999999976322 111112222111
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++++||++|+| +++++++|.+
T Consensus 136 -----------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 159 (164)
T cd04139 136 -----------------GVPYVETSAKTRQN---VEKAFYDLVR 159 (164)
T ss_pred -----------------CCeEEEeeCCCCCC---HHHHHHHHHH
Confidence 15789999999999 9999999864
No 96
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.95 E-value=2.2e-26 Score=172.83 Aligned_cols=155 Identities=16% Similarity=0.178 Sum_probs=114.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccc--cccccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFE--SCTSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~--~~~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+||+++|++|||||||+++|+++.+.. ..+|++..+ ..+.+++. .+.+||+||++.+.. ++..+++++|++++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~~d~iil 79 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEA-MSRIYYRGAKAAIV 79 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhh-hhHhhcCCCCEEEE
Confidence 589999999999999999999988864 346666544 34666665 677999999998887 68888889999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC-HHHH-HHHHHHHHHHHhhhcccccccchhhc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS-SSVV-KTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
|+|++++.+ ++....|+..+.... .++|+++|+||+|+..... ...+ ...+.+...
T Consensus 80 v~d~~~~~s-~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~----------------- 137 (193)
T cd04118 80 CYDLTDSSS-FERAKFWVKELQNLE----EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFAD----------------- 137 (193)
T ss_pred EEECCCHHH-HHHHHHHHHHHHhcC----CCCCEEEEEEcccccccccccCccCHHHHHHHHH-----------------
Confidence 999998655 777777776665421 2489999999999864321 1000 011111000
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++||++|+| +++++++|.+
T Consensus 138 ------------------~~~~~~~~~Sa~~~~g---v~~l~~~i~~ 163 (193)
T cd04118 138 ------------------EIKAQHFETSSKTGQN---VDELFQKVAE 163 (193)
T ss_pred ------------------HcCCeEEEEeCCCCCC---HHHHHHHHHH
Confidence 0115779999999999 9999999875
No 97
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.95 E-value=3.4e-26 Score=168.39 Aligned_cols=156 Identities=19% Similarity=0.249 Sum_probs=114.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||++++.++.+.... +|.+... ..+.+++. .+.+||+||++.+.. ++..+++++|++|++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~d~~i~v 79 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQS-LGVAFYRGADCCVLV 79 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHh-HHHHHhcCCCEEEEE
Confidence 58999999999999999999998875444 4555433 34556655 678999999999888 788899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcC-CCCCcEEEEEeCCCccCCCC--HHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQ-SSRVNILVCCNKQDQTLAKS--SSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|++++++ +.....|...++...... ..++|+++|+||+|+..... ......... .
T Consensus 80 ~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~------------------- 138 (172)
T cd01862 80 YDVTNPKS-FESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ-S------------------- 138 (172)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH-H-------------------
Confidence 99998654 677766666554432111 22499999999999974322 222221111 1
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++||++|+| +++++++|.+
T Consensus 139 ------------------~~~~~~~~~Sa~~~~g---v~~l~~~i~~ 164 (172)
T cd01862 139 ------------------NGNIPYFETSAKEAIN---VEQAFETIAR 164 (172)
T ss_pred ------------------cCCceEEEEECCCCCC---HHHHHHHHHH
Confidence 1126789999999999 9999999875
No 98
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.95 E-value=8.6e-27 Score=172.05 Aligned_cols=164 Identities=14% Similarity=0.167 Sum_probs=110.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeC
Q psy1914 14 VLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDS 89 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~ 89 (211)
|+++|++|||||||++++.++.+...+ |+...... .+.+++. .+.+|||||++.+.. ++..+++++|++++|+|+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDR-LRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccch-hchhhcCCCCEEEEEEEC
Confidence 589999999999999999999886655 45444333 3555655 689999999999887 788889999999999999
Q ss_pred CCchhhHHHHHH-HHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 90 STVQKTLRDVAE-SLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 90 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
+++++ ++.... |+..+... . +++|+++|+||+|+........ .+.+ .+....+ .. +...+
T Consensus 80 ~~~~s-~~~~~~~~~~~i~~~--~--~~~piilv~nK~Dl~~~~~~~~---~~~~----~~~~~v~------~~-~~~~~ 140 (174)
T smart00174 80 DSPAS-FENVKEKWYPEVKHF--C--PNTPIILVGTKLDLREDKSTLR---ELSK----QKQEPVT------YE-QGEAL 140 (174)
T ss_pred CCHHH-HHHHHHHHHHHHHhh--C--CCCCEEEEecChhhhhChhhhh---hhhc----ccCCCcc------HH-HHHHH
Confidence 98655 777764 55544432 1 3499999999999975332110 0000 0000000 00 00000
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+. ..+...+++|||++|+| ++++++.|.+
T Consensus 141 ~~----------~~~~~~~~e~Sa~~~~~---v~~lf~~l~~ 169 (174)
T smart00174 141 AK----------RIGAVKYLECSALTQEG---VREVFEEAIR 169 (174)
T ss_pred HH----------HcCCcEEEEecCCCCCC---HHHHHHHHHH
Confidence 00 01114789999999999 9999998864
No 99
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.95 E-value=3.5e-26 Score=166.93 Aligned_cols=153 Identities=20% Similarity=0.296 Sum_probs=116.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||++++.+..+.... ++.+... ..+.+++. .+.+||+||+..+.. .+..+++.+|++++|
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~d~~ilv 79 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRS-ITSSYYRGAVGALLV 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH-HHHHHhCCCCEEEEE
Confidence 58999999999999999999988875444 5555433 34566654 788999999998887 688889999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++.+ ++.+..|+..+..... .++|+++|+||+|+...... .+....+.+..
T Consensus 80 ~d~~~~~s-~~~~~~~l~~~~~~~~---~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~-------------------- 135 (164)
T smart00175 80 YDITNRES-FENLKNWLKELREYAD---PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEH-------------------- 135 (164)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhCC---CCCeEEEEEEchhcccccCCCHHHHHHHHHHc--------------------
Confidence 99999665 7777777777665422 34999999999998764322 11121121111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++++||++|+| +++++++|.+
T Consensus 136 ------------------~~~~~e~Sa~~~~~---i~~l~~~i~~ 159 (164)
T smart00175 136 ------------------GLPFFETSAKTNTN---VEEAFEELAR 159 (164)
T ss_pred ------------------CCeEEEEeCCCCCC---HHHHHHHHHH
Confidence 15689999999999 9999999875
No 100
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=3e-26 Score=168.12 Aligned_cols=158 Identities=15% Similarity=0.130 Sum_probs=111.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
+||+++|.+|||||||+++|..+.+...++++..... ...+.+. .+.+|||||++.+.. .+..++..+|++++|+|
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRA-NLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhH-HHhhhcccCCEEEEEEE
Confidence 4899999999999999999999988766665433322 2334333 889999999988777 56777889999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
++++.+ ++.+..+|...+.... .++|+++|+||+|+.+........+.+.......
T Consensus 80 ~~~~~s-~~~~~~~~~~~i~~~~---~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-------------------- 135 (166)
T cd01893 80 VDRPST-LERIRTKWLPLIRRLG---VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEF-------------------- 135 (166)
T ss_pred CCCHHH-HHHHHHHHHHHHHHhC---CCCCEEEEEEchhcccccchhHHHHHHHHHHHHH--------------------
Confidence 998665 7776655554443221 2499999999999976654321111111111100
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....+++|||++|.| ++++++.+.+
T Consensus 136 -------------~~~~~~~e~Sa~~~~~---v~~lf~~~~~ 161 (166)
T cd01893 136 -------------REIETCVECSAKTLIN---VSEVFYYAQK 161 (166)
T ss_pred -------------hcccEEEEeccccccC---HHHHHHHHHH
Confidence 0003689999999999 9999988764
No 101
>KOG0074|consensus
Probab=99.95 E-value=2e-27 Score=162.48 Aligned_cols=166 Identities=22% Similarity=0.380 Sum_probs=142.3
Q ss_pred eccccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCc-eEEEEECCCchhhhhhhHHHhhhcCCE
Q psy1914 4 FKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKK-NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 4 ~~~~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
|+.+.++++||+++|..++||||+++.|...+.....||.|++...+.+++. ++++||.+|+...++ +|..||.+.|+
T Consensus 10 ~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRp-yWsNYyenvd~ 88 (185)
T KOG0074|consen 10 CKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRP-YWSNYYENVDG 88 (185)
T ss_pred hcCCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccch-hhhhhhhccce
Confidence 4567789999999999999999999999999998889999999999999996 999999999999999 89999999999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
+|||+|+.| +..++++.+.+..++....... +|+++..||.|+..+...+++...+. +. .+.
T Consensus 89 lIyVIDS~D-~krfeE~~~el~ELleeeKl~~--vpvlIfankQdlltaa~~eeia~kln--l~-----------~lr-- 150 (185)
T KOG0074|consen 89 LIYVIDSTD-EKRFEEISEELVELLEEEKLAE--VPVLIFANKQDLLTAAKVEEIALKLN--LA-----------GLR-- 150 (185)
T ss_pred EEEEEeCCc-hHhHHHHHHHHHHHhhhhhhhc--cceeehhhhhHHHhhcchHHHHHhcc--hh-----------hhh--
Confidence 999999888 4558899888888888766767 99999999999998887776554432 10 000
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+++-+|||.+++| +..-.+|+..
T Consensus 151 -------------------dRswhIq~csals~eg---~~dg~~wv~s 176 (185)
T KOG0074|consen 151 -------------------DRSWHIQECSALSLEG---STDGSDWVQS 176 (185)
T ss_pred -------------------hceEEeeeCccccccC---ccCcchhhhc
Confidence 2348889999999999 8888888764
No 102
>PLN03108 Rab family protein; Provisional
Probab=99.95 E-value=4e-26 Score=173.58 Aligned_cols=155 Identities=17% Similarity=0.209 Sum_probs=117.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..+||+++|++|||||||+++|+...+...+ +|++... ..+.+++. .+.+|||+|++.+.. .+..+++.+|+++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~-~~~~~~~~ad~~v 83 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS-ITRSYYRGAAGAL 83 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHH-HHHHHhccCCEEE
Confidence 4589999999999999999999998876544 5665543 34566664 688999999999988 6888889999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ +.....|+..+.... ....|+++|+||+|+.+.+... +..+.+.+..
T Consensus 84 lv~D~~~~~s-~~~l~~~~~~~~~~~---~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~------------------ 141 (210)
T PLN03108 84 LVYDITRRET-FNHLASWLEDARQHA---NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH------------------ 141 (210)
T ss_pred EEEECCcHHH-HHHHHHHHHHHHHhc---CCCCcEEEEEECccCccccCCCHHHHHHHHHHc------------------
Confidence 9999999665 777777777665432 2348999999999997654322 1112222111
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++++||++|+| ++++++|+.+
T Consensus 142 --------------------~~~~~e~Sa~~~~~---v~e~f~~l~~ 165 (210)
T PLN03108 142 --------------------GLIFMEASAKTAQN---VEEAFIKTAA 165 (210)
T ss_pred --------------------CCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 16789999999999 9999998864
No 103
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.95 E-value=2e-26 Score=170.28 Aligned_cols=168 Identities=14% Similarity=0.222 Sum_probs=112.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+.||+++|++|||||||++++.++.+...+ ||++... ..+.+++. .+.+|||||++.+.. ++..++.++|++++|
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~~i~v 79 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR-LRPLSYPDTDVILMC 79 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhh-ccccccCCCCEEEEE
Confidence 368999999999999999999998887655 5555443 34566655 789999999998887 677778889999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|+++.++ +......|...+... . .++|+++|+||+|+.+...... .+.. .. ..... ... ..
T Consensus 80 ~~~~~~~s-~~~~~~~~~~~~~~~-~--~~~piilv~nK~Dl~~~~~~~~---~i~~-~~---~~~v~----~~~---~~ 141 (175)
T cd01870 80 FSIDSPDS-LENIPEKWTPEVKHF-C--PNVPIILVGNKKDLRNDEHTRR---ELAK-MK---QEPVK----PEE---GR 141 (175)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhh-C--CCCCEEEEeeChhcccChhhhh---hhhh-cc---CCCcc----HHH---HH
Confidence 99998654 666655444333321 1 2489999999999975432211 1100 00 00000 000 00
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
. +.......++++|||++|.| +++++++|.+
T Consensus 142 ~----------~~~~~~~~~~~~~Sa~~~~~---v~~lf~~l~~ 172 (175)
T cd01870 142 D----------MANKIGAFGYMECSAKTKEG---VREVFEMATR 172 (175)
T ss_pred H----------HHHHcCCcEEEEeccccCcC---HHHHHHHHHH
Confidence 0 00001125789999999999 9999999975
No 104
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.95 E-value=5.7e-26 Score=164.30 Aligned_cols=152 Identities=23% Similarity=0.317 Sum_probs=116.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccc-ccccceeeEEE--EecC--ceEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFES-CTSLKENVGNF--TYEK--KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~~~~~--~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|+++||||||++++.+..+... .+|.+...... ..++ ..+.+||+||+..+.. .+..+++++|++++|
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~ii~v 79 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRS-ITPSYYRGAHGAILV 79 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHH-HHHHHhcCCCEEEEE
Confidence 5899999999999999999999888765 46666655543 4333 3889999999999888 688899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC--CHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK--SSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|++++++ +..+..|+..+..... ...|+++++||+|+.... ..++..+ +...
T Consensus 80 ~d~~~~~~-~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~-------------------- 134 (159)
T cd00154 80 YDITNRES-FENLDKWLKELKEYAP---ENIPIILVGNKIDLEDQRQVSTEEAQQ-FAKE-------------------- 134 (159)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhCC---CCCcEEEEEEcccccccccccHHHHHH-HHHH--------------------
Confidence 99998554 7788887777665431 348999999999996222 2222221 2111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++++||++|+| ++++++||.+
T Consensus 135 ------------------~~~~~~~~sa~~~~~---i~~~~~~i~~ 159 (159)
T cd00154 135 ------------------NGLLFFETSAKTGEN---VEELFQSLAE 159 (159)
T ss_pred ------------------cCCeEEEEecCCCCC---HHHHHHHHhC
Confidence 126889999999999 9999999864
No 105
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.95 E-value=3e-26 Score=169.20 Aligned_cols=114 Identities=13% Similarity=0.153 Sum_probs=88.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
+||+++|++|+|||||++++.++.+...+++++... ..+.+++. .+.+|||||++.+.. ++..+++++|++++|+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK-LRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcc-ccccccCCCcEEEEEE
Confidence 589999999999999999999988877665443322 23556654 788999999999888 6888889999999999
Q ss_pred eCCCchhhHHHHHH-HHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 88 DSSTVQKTLRDVAE-SLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 88 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
|++++.+ ++.... |+..+... . +++|+++|+||+|+...
T Consensus 80 d~~~~~s-f~~~~~~~~~~~~~~--~--~~~piilv~nK~Dl~~~ 119 (173)
T cd04130 80 SVVNPSS-FQNISEKWIPEIRKH--N--PKAPIILVGTQADLRTD 119 (173)
T ss_pred ECCCHHH-HHHHHHHHHHHHHhh--C--CCCCEEEEeeChhhccC
Confidence 9999665 777654 44444321 1 24899999999999643
No 106
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.95 E-value=7.9e-26 Score=164.58 Aligned_cols=153 Identities=20% Similarity=0.238 Sum_probs=113.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|+|||||++++..+.+.... ++++... ..+.+.+. .+.+||+||++.+.. ++..+++++|++++|
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i~v 79 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA-LGPIYYRDADGAILV 79 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH-hhHHHhccCCEEEEE
Confidence 58999999999999999999998875544 3443332 33444444 789999999998888 688888999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++++ +.....|+..+..... .++|+++|+||+|+....... .....+.+..
T Consensus 80 ~d~~~~~s-~~~~~~~~~~i~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~-------------------- 135 (162)
T cd04123 80 YDITDADS-FQKVKKWIKELKQMRG---NNISLVIVGNKIDLERQRVVSKSEAEEYAKSV-------------------- 135 (162)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhCC---CCCeEEEEEECcccccccCCCHHHHHHHHHHc--------------------
Confidence 99998664 7777777666654321 248999999999998554321 1111121111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+++|||++|+| ++++++||.+
T Consensus 136 ------------------~~~~~~~s~~~~~g---i~~~~~~l~~ 159 (162)
T cd04123 136 ------------------GAKHFETSAKTGKG---IEELFLSLAK 159 (162)
T ss_pred ------------------CCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 15678999999999 9999999865
No 107
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=1.4e-26 Score=170.40 Aligned_cols=155 Identities=14% Similarity=0.083 Sum_probs=114.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc-ccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYF-ESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~-~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
++-+||+++|.+|||||||++++.++.+. ..+ ||++... ..+.+++. .+.+||++|++.+.. ++..+++++|+
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-~~~~~~~~~d~ 80 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAIL-LNDAELAACDV 80 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccc-cchhhhhcCCE
Confidence 45689999999999999999999999886 555 6666543 34666664 788999999998887 67888899999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+++|+|++++.+ ++.+..|+..+... .++|+++|+||+|+.+..... ...+.+.+.++
T Consensus 81 ~llv~d~~~~~s-~~~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~--------------- 139 (169)
T cd01892 81 ACLVYDSSDPKS-FSYCAEVYKKYFML-----GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLG--------------- 139 (169)
T ss_pred EEEEEeCCCHHH-HHHHHHHHHHhccC-----CCCeEEEEEEcccccccccccccCHHHHHHHcC---------------
Confidence 999999998654 77776666544221 249999999999996543211 11112221111
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
. ..++++||++|+| ++++++.|.+
T Consensus 140 ---------------------~-~~~~~~Sa~~~~~---v~~lf~~l~~ 163 (169)
T cd01892 140 ---------------------L-PPPLHFSSKLGDS---SNELFTKLAT 163 (169)
T ss_pred ---------------------C-CCCEEEEeccCcc---HHHHHHHHHH
Confidence 0 1347899999999 9999998875
No 108
>KOG0086|consensus
Probab=99.95 E-value=1.4e-26 Score=160.46 Aligned_cols=150 Identities=20% Similarity=0.342 Sum_probs=122.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE--EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
-+|++++|+.|+|||+|+.++...++.... .|+|...+. +.+.++ ++++|||+|+++|+. ..+.|++++.+.++
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRS-VtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRS-VTRSYYRGAAGALL 87 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHH-HHHHHhccccceEE
Confidence 368999999999999999999999986655 577766654 566666 899999999999999 79999999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
|+|+++.++ +.....|+.++.. ++.+++.+++++||.||.+.+++......- +.
T Consensus 88 VYD~Tsrds-fnaLtnWL~DaR~---lAs~nIvviL~GnKkDL~~~R~VtflEAs~---Fa------------------- 141 (214)
T KOG0086|consen 88 VYDITSRDS-FNALTNWLTDART---LASPNIVVILCGNKKDLDPEREVTFLEASR---FA------------------- 141 (214)
T ss_pred EEeccchhh-HHHHHHHHHHHHh---hCCCcEEEEEeCChhhcChhhhhhHHHHHh---hh-------------------
Confidence 999999665 9999999988765 455679999999999999888765433211 11
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHH
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQ 205 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~ 205 (211)
.++...+.++||+||++ ++|.+
T Consensus 142 ---------------qEnel~flETSa~TGeN---VEEaF 163 (214)
T KOG0086|consen 142 ---------------QENELMFLETSALTGEN---VEEAF 163 (214)
T ss_pred ---------------cccceeeeeeccccccc---HHHHH
Confidence 02337789999999999 99876
No 109
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.95 E-value=2.2e-26 Score=168.53 Aligned_cols=154 Identities=16% Similarity=0.256 Sum_probs=109.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee-eEEEEecCc--eEEEEECCCchhh-hhhhHHHhhhcCCEEEEEE
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN-VGNFTYEKK--NIKIVDLPGEDRL-RNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~-~~~~~~~~~--~~~i~D~~G~~~~-~~~~~~~~~~~~d~ii~v~ 87 (211)
||+++|++|||||||+++++.+.+...+ +++... ...+.+++. .+.+||+||+..+ .. ....+++.+|++++|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTE-QLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccc-hHHHHHHhCCEEEEEE
Confidence 5899999999999999999988886665 343222 233556655 6889999999853 33 4667788999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
|++++.+ ++.+..|+..+..... ...++|+++|+||+|+...+.... ....+.+..+
T Consensus 80 d~~~~~s-~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-------------------- 137 (165)
T cd04146 80 SITDRSS-FDEISQLKQLIREIKK-RDREIPVILVGNKADLLHYRQVSTEEGEKLASELG-------------------- 137 (165)
T ss_pred ECCCHHH-HHHHHHHHHHHHHHhc-CCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcC--------------------
Confidence 9999655 8777776655543211 123499999999999965433221 1111211111
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecC-CCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDS-ASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg-~g~~~i~~l~~~i~~ 210 (211)
.++++|||++| .| +++++++|.+
T Consensus 138 ------------------~~~~e~Sa~~~~~~---v~~~f~~l~~ 161 (165)
T cd04146 138 ------------------CLFFEVSAAEDYDG---VHSVFHELCR 161 (165)
T ss_pred ------------------CEEEEeCCCCCchh---HHHHHHHHHH
Confidence 57899999999 59 9999999874
No 110
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.95 E-value=5.7e-26 Score=173.91 Aligned_cols=152 Identities=16% Similarity=0.150 Sum_probs=110.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-ccc-cccc--eeeEEEEecCc--eEEEEECCCchhhhhhhHHHhhh-cCCEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYF-ESC-TSLK--ENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKS-SAKGIV 84 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~-~~~-~t~~--~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~-~~d~ii 84 (211)
+||+++|++|||||||+++|..+.+. ..+ ++.+ .....+.+++. .+.+|||||++.+ ....++. ++|+++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~---~~~~~~~~~ad~ii 77 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW---TEDSCMQYQGDAFV 77 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH---HHhHHhhcCCCEEE
Confidence 58999999999999999999988875 445 3432 33344566554 7999999999832 2344556 899999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHH-HHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV-KTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|||++++.+ +..+.+|+..+....... ++|+++|+||+|+.+.+..... ...+...
T Consensus 78 lV~d~td~~S-~~~~~~~~~~l~~~~~~~--~~piilV~NK~Dl~~~~~v~~~~~~~~a~~------------------- 135 (221)
T cd04148 78 VVYSVTDRSS-FERASELRIQLRRNRQLE--DRPIILVGNKSDLARSREVSVQEGRACAVV------------------- 135 (221)
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHhcCCC--CCCEEEEEEChhccccceecHHHHHHHHHH-------------------
Confidence 9999999665 888888777765543222 4999999999999765432211 1112111
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++|||++|.| ++++++||.+
T Consensus 136 -------------------~~~~~~e~SA~~~~g---v~~l~~~l~~ 160 (221)
T cd04148 136 -------------------FDCKFIETSAGLQHN---VDELLEGIVR 160 (221)
T ss_pred -------------------cCCeEEEecCCCCCC---HHHHHHHHHH
Confidence 115789999999999 9999999874
No 111
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.95 E-value=3e-26 Score=169.12 Aligned_cols=167 Identities=11% Similarity=0.120 Sum_probs=111.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
+||+++|++|+|||||++++..+.+...+ ||..... ..+.+++. .+.+|||||+..+.. ++..+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR-LRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc-cccccCCCCCEEEEEE
Confidence 58999999999999999999998886555 4443332 23556655 578999999999887 6788889999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++++.+ ++.....|...+... ..++|+++|+||+|+.+............ ....+. .. ...
T Consensus 80 ~~~~~~s-~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~-------~~~v~~----~~---~~~ 141 (174)
T cd04135 80 SVVNPAS-FQNVKEEWVPELKEY---APNVPYLLVGTQIDLRDDPKTLARLNDMK-------EKPVTV----EQ---GQK 141 (174)
T ss_pred ECCCHHH-HHHHHHHHHHHHHhh---CCCCCEEEEeEchhhhcChhhHHHHhhcc-------CCCCCH----HH---HHH
Confidence 9999665 777765444444322 23499999999999965432211110000 000000 00 000
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++. . .....+++|||++|+| ++++++-+.+
T Consensus 142 ~~~---------~-~~~~~~~e~Sa~~~~g---i~~~f~~~~~ 171 (174)
T cd04135 142 LAK---------E-IGAHCYVECSALTQKG---LKTVFDEAIL 171 (174)
T ss_pred HHH---------H-cCCCEEEEecCCcCCC---HHHHHHHHHH
Confidence 000 0 1114689999999999 9999987754
No 112
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=1.5e-25 Score=164.62 Aligned_cols=156 Identities=19% Similarity=0.230 Sum_probs=115.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc-ccccce--eeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES-CTSLKE--NVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~t~~~--~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
+..++|+++|++|||||||++++..+.+... .+|++. ....+.+++. .+.+||+||++.+.. .+..++..+|++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~d~~ 83 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRS-ITQSYYRSANAL 83 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHH-HHHHHhcCCCEE
Confidence 3458999999999999999999998776544 355553 3334666664 688999999999888 578889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|+++..+ +.....|+..+... ...++|+++|+||+|+.+.++.. .....+.+.
T Consensus 84 i~v~d~~~~~s-~~~~~~~~~~l~~~---~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~------------------ 141 (169)
T cd04114 84 ILTYDITCEES-FRCLPEWLREIEQY---ANNKVITILVGNKIDLAERREVSQQRAEEFSDA------------------ 141 (169)
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHh---CCCCCeEEEEEECcccccccccCHHHHHHHHHH------------------
Confidence 99999988554 66666666544321 12348999999999997654432 212222110
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++|||++|+| +++++++|.+
T Consensus 142 --------------------~~~~~~~~Sa~~~~g---v~~l~~~i~~ 166 (169)
T cd04114 142 --------------------QDMYYLETSAKESDN---VEKLFLDLAC 166 (169)
T ss_pred --------------------cCCeEEEeeCCCCCC---HHHHHHHHHH
Confidence 115789999999999 9999999875
No 113
>KOG0072|consensus
Probab=99.94 E-value=2.9e-27 Score=162.18 Aligned_cols=160 Identities=24% Similarity=0.422 Sum_probs=140.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
.++.+++++|..|+|||+++.++--++...+.||++++...+++++.++++||++|+-++++ +|+-|+.+.|++|+|+|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirP-yWRcYy~dt~avIyVVD 94 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRP-YWRCYYADTDAVIYVVD 94 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccH-HHHHHhcccceEEEEEe
Confidence 37899999999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHH-HHHHHHhhhcccccccchhhccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQ-KELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
++|.++ +..+...+..+++.+.+++ ..+++++||.|...+....+....+. ..+.
T Consensus 95 ssd~dr-is~a~~el~~mL~E~eLq~--a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk--------------------- 150 (182)
T KOG0072|consen 95 SSDRDR-ISIAGVELYSMLQEEELQH--AKLLVFANKQDYSGALTRSEVLKMLGLQKLK--------------------- 150 (182)
T ss_pred ccchhh-hhhhHHHHHHHhccHhhcC--ceEEEEeccccchhhhhHHHHHHHhChHHHh---------------------
Confidence 999776 7888889999999988888 88999999999987766655444332 0111
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+.+|+.||.+|+| +++.++||.+
T Consensus 151 --------------~r~~~Iv~tSA~kg~G---ld~~~DWL~~ 176 (182)
T KOG0072|consen 151 --------------DRIWQIVKTSAVKGEG---LDPAMDWLQR 176 (182)
T ss_pred --------------hheeEEEeeccccccC---CcHHHHHHHH
Confidence 2338899999999999 9999999975
No 114
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.94 E-value=8.5e-26 Score=170.34 Aligned_cols=155 Identities=17% Similarity=0.205 Sum_probs=114.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc-cccc-eeeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC-TSLK-ENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~-~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
||+++|++|||||||+++++.+.+...+ +|+. .....+.+++. .+.+||+||+..+.. ++..++.++|++++|+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPA-MRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhH-HHHHHhhcCCEEEEEEE
Confidence 6899999999999999999998887665 3432 23344666664 788999999999887 68888999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC-CCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA-KSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
++++.+ ++....|+..+...... .++|+++|+||+|+... ..... . ...+...
T Consensus 80 ~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilv~NK~Dl~~~~~~v~~-~-~~~~~~~--------------------- 133 (198)
T cd04147 80 VDDPES-FEEVERLREEILEVKED--KFVPIVVVGNKADSLEEERQVPA-K-DALSTVE--------------------- 133 (198)
T ss_pred CCCHHH-HHHHHHHHHHHHHhcCC--CCCcEEEEEEccccccccccccH-H-HHHHHHH---------------------
Confidence 998554 78887777777654322 34999999999999653 21111 1 1111110
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
......++++||++|.| ++++++||.+
T Consensus 134 -------------~~~~~~~~~~Sa~~g~g---v~~l~~~l~~ 160 (198)
T cd04147 134 -------------LDWNCGFVETSAKDNEN---VLEVFKELLR 160 (198)
T ss_pred -------------hhcCCcEEEecCCCCCC---HHHHHHHHHH
Confidence 01125678999999999 9999999875
No 115
>KOG0087|consensus
Probab=99.94 E-value=1.9e-26 Score=168.19 Aligned_cols=155 Identities=21% Similarity=0.287 Sum_probs=125.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE--EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.-+||+++|++++|||-|+.|+..+.|.... +|+|....+ +.++++ ..++|||+|+++|+. +...|++++-+.+
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrA-itSaYYrgAvGAl 91 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRA-ITSAYYRGAVGAL 91 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhcc-ccchhhcccceeE
Confidence 3478999999999999999999999986544 788876555 677777 788999999999998 8999999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|||++...+ ++.+.+|+.+++.+ .++++++++|+||+||.+.+.+.........+-+
T Consensus 92 lVYDITr~~T-fenv~rWL~ELRdh---ad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~------------------ 149 (222)
T KOG0087|consen 92 LVYDITRRQT-FENVERWLKELRDH---ADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKE------------------ 149 (222)
T ss_pred EEEechhHHH-HHHHHHHHHHHHhc---CCCCeEEEEeecchhhhhccccchhhhHhHHHhc------------------
Confidence 9999998555 99999999998865 4466999999999999886665433332222111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
...|+++||+.+.+ +++.++-+.
T Consensus 150 -------------------~l~f~EtSAl~~tN---Ve~aF~~~l 172 (222)
T KOG0087|consen 150 -------------------GLFFLETSALDATN---VEKAFERVL 172 (222)
T ss_pred -------------------CceEEEeccccccc---HHHHHHHHH
Confidence 16789999999999 998886553
No 116
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.94 E-value=6.1e-26 Score=166.87 Aligned_cols=158 Identities=13% Similarity=0.148 Sum_probs=110.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
+||+++|++|||||||+++|+++.+...+ ++...... .+..++. .+.+||+||++.+.. ....+++.+|++++|+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~-~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR-LRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc-cchhhcCCCCEEEEEE
Confidence 58999999999999999999998874443 44433222 2344443 799999999998776 5667778899999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHH---------HHHHHHHHHHHhhhccccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV---------KTLLQKELNLVRRTKSNQLED 158 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~---------~~~l~~~~~~~~~~~~~~~~~ 158 (211)
|++++.+ +......|...+.... .++|+++|+||+|+..+...... .+...+...
T Consensus 80 d~~~~~s-~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~------------ 143 (171)
T cd00157 80 SVDSPSS-FENVKTKWIPEIRHYC---PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAK------------ 143 (171)
T ss_pred ECCCHHH-HHHHHHHHHHHHHhhC---CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHH------------
Confidence 9998665 6665554444433221 24999999999999866543210 000000000
Q ss_pred chhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 159 TNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
..+...++++||++|+| +++++++|.++
T Consensus 144 ----------------------~~~~~~~~~~Sa~~~~g---i~~l~~~i~~~ 171 (171)
T cd00157 144 ----------------------EIGAIGYMECSALTQEG---VKEVFEEAIRA 171 (171)
T ss_pred ----------------------HhCCeEEEEeecCCCCC---HHHHHHHHhhC
Confidence 01124889999999999 99999999764
No 117
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.94 E-value=1.2e-25 Score=164.02 Aligned_cols=152 Identities=21% Similarity=0.327 Sum_probs=118.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE--EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
||+++|+++||||||+++|.++.+...+ +|.+..... +.+++. .+.+||++|++.+.. +...+++++|++|+||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-~~~~~~~~~~~~ii~f 79 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDS-LRDIFYRNSDAIIIVF 79 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHH-HHHHHHTTESEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence 7999999999999999999999887766 566555443 555555 799999999999888 6788899999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
|.++..+ +..+..|+..+..... .+.|+++++||.|+...+... +....+.+..+
T Consensus 80 d~~~~~S-~~~~~~~~~~i~~~~~---~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-------------------- 135 (162)
T PF00071_consen 80 DVTDEES-FENLKKWLEEIQKYKP---EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-------------------- 135 (162)
T ss_dssp ETTBHHH-HHTHHHHHHHHHHHST---TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT--------------------
T ss_pred ccccccc-cccccccccccccccc---ccccceeeeccccccccccchhhHHHHHHHHhC--------------------
Confidence 9999554 8888888777765432 348999999999998744432 22233333222
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++|||+++.| +.+++..+.+
T Consensus 136 ------------------~~~~e~Sa~~~~~---v~~~f~~~i~ 158 (162)
T PF00071_consen 136 ------------------VPYFEVSAKNGEN---VKEIFQELIR 158 (162)
T ss_dssp ------------------SEEEEEBTTTTTT---HHHHHHHHHH
T ss_pred ------------------CEEEEEECCCCCC---HHHHHHHHHH
Confidence 7899999999999 9999877653
No 118
>KOG0079|consensus
Probab=99.94 E-value=1.4e-26 Score=159.57 Aligned_cols=152 Identities=18% Similarity=0.263 Sum_probs=125.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccccc-ccc--eeeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCT-SLK--ENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~-t~~--~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
++++|+|.+|+|||+|+.++..+.|...|. |+| +.+.++.+++. .+.||||+|+++|+. +...|+++.+++++|
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrt-itstyyrgthgv~vV 87 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRT-ITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHH-HHHHHccCCceEEEE
Confidence 578899999999999999999999988884 444 45666777776 889999999999999 899999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHH-HHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV-KTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|+++.++ |..+.+|+.++.++. +.+|-++|+||.|.++.+-+... ...+...
T Consensus 88 YDVTn~ES-F~Nv~rWLeei~~nc----dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~--------------------- 141 (198)
T KOG0079|consen 88 YDVTNGES-FNNVKRWLEEIRNNC----DSVPKVLVGNKNDDPERRVVDTEDARAFALQ--------------------- 141 (198)
T ss_pred EECcchhh-hHhHHHHHHHHHhcC----ccccceecccCCCCccceeeehHHHHHHHHh---------------------
Confidence 99999665 999999999997653 23899999999999887654322 2223222
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.+|++|||..++ +++++.-|.+
T Consensus 142 -----------------mgie~FETSaKe~~N---vE~mF~cit~ 166 (198)
T KOG0079|consen 142 -----------------MGIELFETSAKENEN---VEAMFHCITK 166 (198)
T ss_pred -----------------cCchheehhhhhccc---chHHHHHHHH
Confidence 238899999999999 9999988764
No 119
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=8.3e-26 Score=169.67 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=80.3
Q ss_pred CCEEEEEcCCCCCHHHHHH-HHHcCcc-----cccc-cccce--eeE-E--------EEecCc--eEEEEECCCchhhhh
Q psy1914 11 QKVVLLSGLSLSGKTLLFA-RLVYSKY-----FESC-TSLKE--NVG-N--------FTYEKK--NIKIVDLPGEDRLRN 70 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~-~l~~~~~-----~~~~-~t~~~--~~~-~--------~~~~~~--~~~i~D~~G~~~~~~ 70 (211)
.+||+++|.+|||||||+. ++.++.+ ...+ ||++. .+. . ..+++. .+.+|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999996 6665433 3333 66642 111 1 134554 8999999999752
Q ss_pred hhHHHhhhcCCEEEEEEeCCCchhhHHHHHH-HHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 71 KFFDQYKSSAKGIVYVLDSSTVQKTLRDVAE-SLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 71 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
+...+++++|++|+|||++++.+ ++.+.. |+..+.... ++.|+++|+||+||..
T Consensus 80 -~~~~~~~~ad~iilv~d~t~~~S-f~~~~~~w~~~i~~~~----~~~piilvgNK~DL~~ 134 (195)
T cd01873 80 -DRRFAYGRSDVVLLCFSIASPNS-LRNVKTMWYPEIRHFC----PRVPVILVGCKLDLRY 134 (195)
T ss_pred -hhcccCCCCCEEEEEEECCChhH-HHHHHHHHHHHHHHhC----CCCCEEEEEEchhccc
Confidence 34557889999999999999665 888865 555543321 2489999999999964
No 120
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.94 E-value=2e-25 Score=165.77 Aligned_cols=154 Identities=19% Similarity=0.283 Sum_probs=116.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee-eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN-VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~-~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
.||+++|++|||||||++++..+.+...+ ||++.. ...+.+++. .+.+|||||++.+.. ++..++..++++++|+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSI-LPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHH-HHHHHHhhCCEEEEEE
Confidence 68999999999999999999988876544 554432 344566554 678999999999988 6888899999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
|+++..+ ++.+..++..++...... +.|+++|+||+|+...+.... ....+.+.
T Consensus 81 d~~~~~~-~~~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~---------------------- 135 (180)
T cd04137 81 SVTSRKS-FEVVKVIYDKILDMLGKE--SVPIVLVGNKSDLHTQRQVSTEEGKELAES---------------------- 135 (180)
T ss_pred ECCCHHH-HHHHHHHHHHHHHhcCCC--CCCEEEEEEchhhhhcCccCHHHHHHHHHH----------------------
Confidence 9999654 888888888877643223 389999999999975433221 11111111
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+++++||++|+| ++++++||.+
T Consensus 136 ----------------~~~~~~~~Sa~~~~g---v~~l~~~l~~ 160 (180)
T cd04137 136 ----------------WGAAFLESSARENEN---VEEAFELLIE 160 (180)
T ss_pred ----------------cCCeEEEEeCCCCCC---HHHHHHHHHH
Confidence 115789999999999 9999999874
No 121
>KOG0093|consensus
Probab=99.94 E-value=7.9e-26 Score=155.68 Aligned_cols=154 Identities=19% Similarity=0.280 Sum_probs=122.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEEe--cCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFTY--EKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~--~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
...|++++|++.+||||++.+++...|...+ .|.|......++ ..+ .+++|||+|+++++. +...|+++++++|
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrt-iTTayyRgamgfi 98 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRT-ITTAYYRGAMGFI 98 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhH-HHHHHhhccceEE
Confidence 3569999999999999999999999986665 677765544322 222 899999999999999 8999999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+++|+++ ++++..+..|...+... ...+ .|+|+|+||||+...+.. .+....+.+++.
T Consensus 99 LmyDitN-eeSf~svqdw~tqIkty-sw~n--aqvilvgnKCDmd~eRvis~e~g~~l~~~LG----------------- 157 (193)
T KOG0093|consen 99 LMYDITN-EESFNSVQDWITQIKTY-SWDN--AQVILVGNKCDMDSERVISHERGRQLADQLG----------------- 157 (193)
T ss_pred EEEecCC-HHHHHHHHHHHHHheee-eccC--ceEEEEecccCCccceeeeHHHHHHHHHHhC-----------------
Confidence 9999999 55588888887666543 3344 999999999999877653 344444555555
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
..|+++|||.+-+ ++.+++-+.
T Consensus 158 ---------------------fefFEtSaK~Nin---Vk~~Fe~lv 179 (193)
T KOG0093|consen 158 ---------------------FEFFETSAKENIN---VKQVFERLV 179 (193)
T ss_pred ---------------------hHHhhhccccccc---HHHHHHHHH
Confidence 5789999999999 999988765
No 122
>KOG0095|consensus
Probab=99.94 E-value=5.2e-26 Score=157.07 Aligned_cols=120 Identities=22% Similarity=0.254 Sum_probs=100.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccc--eeeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLK--ENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~--~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|+.|+|||+|+.++..+-|++.. .|+| +.+.++++++. ++.+|||+|+++|++ +...|++.++++|+|
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrs-itqsyyrsahalilv 86 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRS-ITQSYYRSAHALILV 86 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHH-HHHHHhhhcceEEEE
Confidence 68999999999999999999999986654 5555 45666777776 889999999999999 899999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV 136 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~ 136 (211)
+|++. +.+++...+|+.++-+.. ..++--++|+||+|+.+.+++.+
T Consensus 87 ydisc-qpsfdclpewlreie~ya---n~kvlkilvgnk~d~~drrevp~ 132 (213)
T KOG0095|consen 87 YDISC-QPSFDCLPEWLREIEQYA---NNKVLKILVGNKIDLADRREVPQ 132 (213)
T ss_pred Eeccc-CcchhhhHHHHHHHHHHh---hcceEEEeeccccchhhhhhhhH
Confidence 99987 445999999999887542 24477899999999988766543
No 123
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.94 E-value=3.7e-25 Score=160.69 Aligned_cols=153 Identities=17% Similarity=0.290 Sum_probs=113.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee-eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN-VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~-~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
||+++|++|||||||++++++..+...+ +++... ...+.+++. .+.+||+||+..+.. .+..+++.+|++++|+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSA-MRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHH-HHHHHHhcCCEEEEEEE
Confidence 6899999999999999999988776555 343322 223555543 789999999998888 68888899999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
++++++ +.....++..+...... ..+|+++|+||+|+...... .+....+.+..
T Consensus 80 ~~~~~s-~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---------------------- 134 (160)
T cd00876 80 ITDRES-FEEIKGYREQILRVKDD--EDIPIVLVGNKCDLENERQVSKEEGKALAKEW---------------------- 134 (160)
T ss_pred CCCHHH-HHHHHHHHHHHHHhcCC--CCCcEEEEEECCcccccceecHHHHHHHHHHc----------------------
Confidence 998664 77888887777654221 34999999999999863322 11111121111
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++++||++|+| +++++++|.+
T Consensus 135 ----------------~~~~~~~S~~~~~~---i~~l~~~l~~ 158 (160)
T cd00876 135 ----------------GCPFIETSAKDNIN---IDEVFKLLVR 158 (160)
T ss_pred ----------------CCcEEEeccCCCCC---HHHHHHHHHh
Confidence 15789999999999 9999999875
No 124
>KOG0091|consensus
Probab=99.94 E-value=8.8e-26 Score=158.12 Aligned_cols=157 Identities=18% Similarity=0.258 Sum_probs=124.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc---eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK---NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~---~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
..+|++++|++.+|||||+..++.+++.+.. ||.|...- .+++... ++++|||+|+++|++ ++..|+++.-++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrs-itksyyrnsvgv 85 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRS-ITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHH-HHHHHhhcccce
Confidence 3579999999999999999999999997655 77775432 2455443 899999999999999 899999999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|.++.++ ++.+..|+.+....-. ...++.+++|++|+||...+++.. ..+.+.+...
T Consensus 86 llvyditnr~s-fehv~~w~~ea~m~~q-~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hg---------------- 147 (213)
T KOG0091|consen 86 LLVYDITNRES-FEHVENWVKEAAMATQ-GPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHG---------------- 147 (213)
T ss_pred EEEEeccchhh-HHHHHHHHHHHHHhcC-CCCeeEEEEeccccchhhhccccHHHHHHHHHhcC----------------
Confidence 99999999665 9999999887654422 123467789999999998877543 2333443333
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..|+++||++|.| ++|.++.|.+
T Consensus 148 ----------------------M~FVETSak~g~N---VeEAF~mlaq 170 (213)
T KOG0091|consen 148 ----------------------MAFVETSAKNGCN---VEEAFDMLAQ 170 (213)
T ss_pred ----------------------ceEEEecccCCCc---HHHHHHHHHH
Confidence 7899999999999 9999988753
No 125
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.93 E-value=9e-25 Score=160.28 Aligned_cols=153 Identities=18% Similarity=0.223 Sum_probs=102.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccc-cc--cccceeeEEEEecCceEEEEECCCchhh----h----hhhHHHhhhcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFE-SC--TSLKENVGNFTYEKKNIKIVDLPGEDRL----R----NKFFDQYKSSA 80 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~-~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~----~----~~~~~~~~~~~ 80 (211)
++|+++|++|||||||+++|.+..+.. .+ +|.......+.+++..+.+|||||+... + ..........+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 479999999999999999999887632 22 3455566666666779999999998321 0 00111112236
Q ss_pred CEEEEEEeCCCchh-hHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy1914 81 KGIVYVLDSSTVQK-TLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 81 d~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
|++++|+|+++... .+.....++..+... .. +.|+++|+||+|+.+...... ..+...
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~--~~pvilv~NK~Dl~~~~~~~~----~~~~~~------------- 139 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FK--NKPVIVVLNKIDLLTFEDLSE----IEEEEE------------- 139 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhh--cC--cCCeEEEEEccccCchhhHHH----HHHhhh-------------
Confidence 89999999987543 234444555544322 12 389999999999975543322 111000
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++|||++|+| ++++++||.+
T Consensus 140 ----------------------~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 165 (168)
T cd01897 140 ----------------------LEGEEVLKISTLTEEG---VDEVKNKACE 165 (168)
T ss_pred ----------------------hccCceEEEEecccCC---HHHHHHHHHH
Confidence 1126789999999999 9999999975
No 126
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.93 E-value=7.7e-25 Score=163.69 Aligned_cols=154 Identities=16% Similarity=0.205 Sum_probs=109.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+.||+++|++|+|||||++++..+.+.+.+ +|....+. .+.+++. .+.+||++|++.+.. ....++.++++++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYER-LRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccc-cchhhcCCCCEEEEE
Confidence 469999999999999999999987776544 44433332 3455554 688999999988776 556677889999999
Q ss_pred EeCCCchhhHHHHHH-HHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-----------HHHHHHHHHHHHHhhhccc
Q psy1914 87 LDSSTVQKTLRDVAE-SLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-----------VVKTLLQKELNLVRRTKSN 154 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-----------~~~~~l~~~~~~~~~~~~~ 154 (211)
+|+++.++ +..... |+..+.+. . +++|+++|+||+|+.+..... +....+.+.+
T Consensus 80 ~~i~~~~s-~~~~~~~~~~~i~~~--~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 145 (187)
T cd04129 80 FAVDTPDS-LENVRTKWIEEVRRY--C--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEI--------- 145 (187)
T ss_pred EECCCHHH-HHHHHHHHHHHHHHh--C--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHh---------
Confidence 99988654 777765 44444332 1 249999999999995432110 1111111111
Q ss_pred ccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 155 QLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+..++++|||++|+| ++++++++.+
T Consensus 146 ----------------------------~~~~~~e~Sa~~~~~---v~~~f~~l~~ 170 (187)
T cd04129 146 ----------------------------GAKKYMECSALTGEG---VDDVFEAATR 170 (187)
T ss_pred ----------------------------CCcEEEEccCCCCCC---HHHHHHHHHH
Confidence 114789999999999 9999999864
No 127
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=1.5e-24 Score=158.18 Aligned_cols=157 Identities=15% Similarity=0.169 Sum_probs=103.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc---cccc---ccccceeeEEEEec-CceEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK---YFES---CTSLKENVGNFTYE-KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~---~~~~---~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+.|+++|++|||||||+++|++.. +... ..|.......+.+. +..+.+|||||++.+.. ....++.++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~-~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIK-NMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHH-HHHhhhhcCCEEE
Confidence 358999999999999999999643 2221 12334444456665 66999999999999876 4556778899999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|+|+++.. ..+....+... .. ... .|+++|+||+|+.+........+.+.+.+... .
T Consensus 80 ~V~d~~~~~--~~~~~~~~~~~-~~--~~~--~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~---~------------ 137 (164)
T cd04171 80 LVVAADEGI--MPQTREHLEIL-EL--LGI--KRGLVVLTKADLVDEDWLELVEEEIRELLAGT---F------------ 137 (164)
T ss_pred EEEECCCCc--cHhHHHHHHHH-HH--hCC--CcEEEEEECccccCHHHHHHHHHHHHHHHHhc---C------------
Confidence 999997621 12222222211 11 111 49999999999975432222222333222210 0
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
....+++++||++|+| +++++++|.++
T Consensus 138 -----------------~~~~~~~~~Sa~~~~~---v~~l~~~l~~~ 164 (164)
T cd04171 138 -----------------LADAPIFPVSAVTGEG---IEELKEYLDEL 164 (164)
T ss_pred -----------------cCCCcEEEEeCCCCcC---HHHHHHHHhhC
Confidence 0126789999999999 99999999765
No 128
>KOG0076|consensus
Probab=99.93 E-value=6.4e-26 Score=160.34 Aligned_cols=163 Identities=22% Similarity=0.367 Sum_probs=135.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCc--------ccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhc
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSK--------YFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSS 79 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~--------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 79 (211)
++..+.++|+|+.++|||||+.++-... .....||.+.+++++.+.+..+.+||.+|++..++ +|..||..
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrS-lw~~yY~~ 92 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRS-LWKKYYWL 92 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHH-HHHHHHHH
Confidence 4667899999999999999999876422 13445899999999999988999999999999999 89999999
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
++++|+++|+++++. +++....+..+..+....+ +|+++.+||.|+.+..+..++...+.. ... .
T Consensus 93 ~H~ii~viDa~~~eR-~~~~~t~~~~v~~~E~leg--~p~L~lankqd~q~~~~~~El~~~~~~-~e~---~-------- 157 (197)
T KOG0076|consen 93 AHGIIYVIDATDRER-FEESKTAFEKVVENEKLEG--APVLVLANKQDLQNAMEAAELDGVFGL-AEL---I-------- 157 (197)
T ss_pred hceeEEeecCCCHHH-HHHHHHHHHHHHHHHHhcC--CchhhhcchhhhhhhhhHHHHHHHhhh-hhh---c--------
Confidence 999999999999776 8888888888887766666 999999999999988777666655442 110 0
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-.+...+.+|||++|+| |++-.+|+++
T Consensus 158 ---------------------~~rd~~~~pvSal~geg---v~egi~w~v~ 184 (197)
T KOG0076|consen 158 ---------------------PRRDNPFQPVSALTGEG---VKEGIEWLVK 184 (197)
T ss_pred ---------------------CCccCccccchhhhccc---HHHHHHHHHH
Confidence 02347788999999999 9999999874
No 129
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=6.2e-25 Score=157.42 Aligned_cols=146 Identities=21% Similarity=0.325 Sum_probs=104.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecCceEEEEECCCchhhh-----hhhHHHhh--hcCC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEKKNIKIVDLPGEDRLR-----NKFFDQYK--SSAK 81 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~-----~~~~~~~~--~~~d 81 (211)
++|+++|.||||||||+|+|++.+. ...+| |.....+.+.+.+..+.++|+||..++. ......++ ..+|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 5899999999999999999999874 45555 4555666788888999999999974322 11333343 5799
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchh
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
++++|+|++..++ .......++. .++|+++|+||+|+..........+.+.+.++
T Consensus 81 ~ii~VvDa~~l~r----~l~l~~ql~e------~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg--------------- 135 (156)
T PF02421_consen 81 LIIVVVDATNLER----NLYLTLQLLE------LGIPVVVVLNKMDEAERKGIEIDAEKLSERLG--------------- 135 (156)
T ss_dssp EEEEEEEGGGHHH----HHHHHHHHHH------TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT---------------
T ss_pred EEEEECCCCCHHH----HHHHHHHHHH------cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC---------------
Confidence 9999999977443 3333344432 23999999999999877665545566766666
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHH
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWM 208 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i 208 (211)
++++.+||++|+| +++|++.|
T Consensus 136 -----------------------~pvi~~sa~~~~g---~~~L~~~I 156 (156)
T PF02421_consen 136 -----------------------VPVIPVSARTGEG---IDELKDAI 156 (156)
T ss_dssp -----------------------S-EEEEBTTTTBT---HHHHHHHH
T ss_pred -----------------------CCEEEEEeCCCcC---HHHHHhhC
Confidence 7899999999999 99999865
No 130
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=2.6e-24 Score=158.06 Aligned_cols=156 Identities=17% Similarity=0.134 Sum_probs=104.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc-cc--ccccceeeEEEEecCc-eEEEEECCCchh----hhhhhHHH---hhhcCC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYF-ES--CTSLKENVGNFTYEKK-NIKIVDLPGEDR----LRNKFFDQ---YKSSAK 81 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~-~~~i~D~~G~~~----~~~~~~~~---~~~~~d 81 (211)
+|+++|++|||||||+++|.+.... .. .+|..+..+.+.+++. .+.+|||||+.. .+. +... .+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKG-LGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCC-chHHHHHHHHhCC
Confidence 6899999999999999999976541 12 2344555666777776 999999999731 111 2222 234699
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCc-CcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccch
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADP-QVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
++++|+|+++++..++....+...+.... ... ++|+++|+||+|+.+..........+. ..
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~---~~------------- 142 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELL--EKPRIVVLNKIDLLDEEELFELLKELL---KE------------- 142 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCcccc--ccccEEEEEchhcCCchhhHHHHHHHH---hh-------------
Confidence 99999999986223555555554443321 112 389999999999976544322221111 10
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
.+..+++++||++|.| ++++++||.++
T Consensus 143 ---------------------~~~~~~~~~Sa~~~~g---i~~l~~~i~~~ 169 (170)
T cd01898 143 ---------------------LWGKPVFPISALTGEG---LDELLRKLAEL 169 (170)
T ss_pred ---------------------CCCCCEEEEecCCCCC---HHHHHHHHHhh
Confidence 0125679999999999 99999999764
No 131
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=1.6e-23 Score=159.89 Aligned_cols=155 Identities=15% Similarity=0.238 Sum_probs=117.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEEe--cCc--eEEEEECCCchhhhhhhHHHhhhcCCE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFTY--EKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~--~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
....+||+++|++|||||||+++++.+.+...+ ||.+.......+ ++. .+.+|||+|++.+.. ++..++..+++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~-~~~~~~~~~~~ 84 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGG-LRDGYYIKGQC 84 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhh-hhHHHhccCCE
Confidence 356789999999999999999998888776554 777766665444 333 889999999999887 68888889999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
+++|+|+++..+ +..+..|+..+... . .++|+++++||+|+........... +.+.
T Consensus 85 ~i~v~d~~~~~s-~~~~~~~~~~i~~~--~--~~~~i~lv~nK~Dl~~~~~~~~~~~-~~~~------------------ 140 (215)
T PTZ00132 85 AIIMFDVTSRIT-YKNVPNWHRDIVRV--C--ENIPIVLVGNKVDVKDRQVKARQIT-FHRK------------------ 140 (215)
T ss_pred EEEEEECcCHHH-HHHHHHHHHHHHHh--C--CCCCEEEEEECccCccccCCHHHHH-HHHH------------------
Confidence 999999998655 77887777776542 1 2389999999999864332221111 1110
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++||++|.| +++++.||.+
T Consensus 141 --------------------~~~~~~e~Sa~~~~~---v~~~f~~ia~ 165 (215)
T PTZ00132 141 --------------------KNLQYYDISAKSNYN---FEKPFLWLAR 165 (215)
T ss_pred --------------------cCCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 115789999999999 9999998864
No 132
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=1.2e-23 Score=154.10 Aligned_cols=157 Identities=19% Similarity=0.196 Sum_probs=105.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc---cccceeeEEEEec---CceEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC---TSLKENVGNFTYE---KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~---~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+.|+++|++|||||||+++|..+.+.... +|.......+..+ +..+.+|||||+..+.. ++..++..+|++++
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~-~~~~~~~~~d~il~ 79 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN-MRARGASLTDIAIL 79 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHH-HHHHHHhhcCEEEE
Confidence 35899999999999999999988765542 2333333444554 45899999999998887 67878889999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
|+|+++... .+....+..+.. .++|+++|+||+|+.... .......+.. +. ...
T Consensus 80 v~d~~~~~~--~~~~~~~~~~~~------~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~-~~---~~~------------- 133 (168)
T cd01887 80 VVAADDGVM--PQTIEAIKLAKA------ANVPFIVALNKIDKPNAN-PERVKNELSE-LG---LQG------------- 133 (168)
T ss_pred EEECCCCcc--HHHHHHHHHHHH------cCCCEEEEEEceeccccc-HHHHHHHHHH-hh---ccc-------------
Confidence 999987432 222222222221 238999999999997432 1112222211 10 000
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.......++++++||++|+| ++++++||.+
T Consensus 134 ------------~~~~~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 163 (168)
T cd01887 134 ------------EDEWGGDVQIVPTSAKTGEG---IDDLLEAILL 163 (168)
T ss_pred ------------cccccCcCcEEEeecccCCC---HHHHHHHHHH
Confidence 00012236889999999999 9999999976
No 133
>KOG0081|consensus
Probab=99.92 E-value=2.4e-25 Score=155.28 Aligned_cols=154 Identities=18% Similarity=0.316 Sum_probs=122.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecC-------c----eEEEEECCCchhhhhhhHHHhh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEK-------K----NIKIVDLPGEDRLRNKFFDQYK 77 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~-------~----~~~i~D~~G~~~~~~~~~~~~~ 77 (211)
+|++.+|.+|+||||++.++..++|.... .|+|+.. ..+.++. + .+++|||+|+++|++ +...++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS-LTTAFf 88 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS-LTTAFF 88 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH-HHHHHH
Confidence 57788999999999999999999987665 4555433 3344431 1 789999999999999 899999
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHH-HHHHHHHHHHHhhhccccc
Q psy1914 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV-KTLLQKELNLVRRTKSNQL 156 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ 156 (211)
+++-+++++||.++ +.++-.+..|+..+..+....+ ..+++++||+||.+.+.+.+. ...+..++.
T Consensus 89 RDAMGFlLiFDlT~-eqSFLnvrnWlSQL~~hAYcE~--PDivlcGNK~DL~~~R~Vs~~qa~~La~kyg---------- 155 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTS-EQSFLNVRNWLSQLQTHAYCEN--PDIVLCGNKADLEDQRVVSEDQAAALADKYG---------- 155 (219)
T ss_pred HhhccceEEEeccc-hHHHHHHHHHHHHHHHhhccCC--CCEEEEcCccchhhhhhhhHHHHHHHHHHhC----------
Confidence 99999999999998 5569999999988876644444 679999999999988775433 333444444
Q ss_pred ccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 157 EDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||-||.+ +++..+.|..
T Consensus 156 ----------------------------lPYfETSA~tg~N---v~kave~Lld 178 (219)
T KOG0081|consen 156 ----------------------------LPYFETSACTGTN---VEKAVELLLD 178 (219)
T ss_pred ----------------------------CCeeeeccccCcC---HHHHHHHHHH
Confidence 7999999999999 9987776643
No 134
>KOG0088|consensus
Probab=99.91 E-value=1.3e-24 Score=151.52 Aligned_cols=157 Identities=18% Similarity=0.258 Sum_probs=121.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccc--eeeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLK--ENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~--~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
+.-.+|++++|..-+|||||+-+++.++|.... .|.- +....+.+++. .+.+|||+|+++|+. +-+-||++.++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHA-LGPIYYRgSnG 88 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHA-LGPIYYRGSNG 88 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhc-cCceEEeCCCc
Confidence 445789999999999999999999999986554 2222 23344555555 899999999999999 78889999999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHH-HHHHHHHHHHHhhhcccccccchh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV-KTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+++|||++|.++ |+.+..|...+.+- .+..+.++||+||+||...+.+.-. .+.+.+...
T Consensus 89 alLVyDITDrdS-FqKVKnWV~Elr~m---lGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvG--------------- 149 (218)
T KOG0088|consen 89 ALLVYDITDRDS-FQKVKNWVLELRTM---LGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVG--------------- 149 (218)
T ss_pred eEEEEeccchHH-HHHHHHHHHHHHHH---hCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhc---------------
Confidence 999999999665 99999999888753 2344889999999999877664322 222221111
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++||+.+.| |.++|+.|..
T Consensus 150 -----------------------A~y~eTSAk~N~G---i~elFe~Lt~ 172 (218)
T KOG0088|consen 150 -----------------------ALYMETSAKDNVG---ISELFESLTA 172 (218)
T ss_pred -----------------------hhheecccccccC---HHHHHHHHHH
Confidence 5668899999999 9999987753
No 135
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.91 E-value=3.8e-23 Score=153.24 Aligned_cols=150 Identities=18% Similarity=0.235 Sum_probs=98.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc-------ccccc-c------cccee--e--EEEEe---cCc--eEEEEECCCchhhh
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSK-------YFESC-T------SLKEN--V--GNFTY---EKK--NIKIVDLPGEDRLR 69 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~-------~~~~~-~------t~~~~--~--~~~~~---~~~--~~~i~D~~G~~~~~ 69 (211)
+|+++|.++||||||+++|++.. +...+ + +.+.. . ..+.+ ++. .+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998732 11111 1 11111 1 12223 223 78899999999998
Q ss_pred hhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHh
Q psy1914 70 NKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVR 149 (211)
Q Consensus 70 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~ 149 (211)
. .+..+++++|++|+|+|+++... .... ..+..... .++|+++|+||+|+.+.. .....+.+.+.+.
T Consensus 82 ~-~~~~~~~~ad~~i~v~D~~~~~~-~~~~-~~~~~~~~------~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~--- 148 (179)
T cd01890 82 Y-EVSRSLAACEGALLLVDATQGVE-AQTL-ANFYLALE------NNLEIIPVINKIDLPSAD-PERVKQQIEDVLG--- 148 (179)
T ss_pred H-HHHHHHHhcCeEEEEEECCCCcc-HhhH-HHHHHHHH------cCCCEEEEEECCCCCcCC-HHHHHHHHHHHhC---
Confidence 8 67888899999999999987543 2222 22233221 238999999999996533 2222222222111
Q ss_pred hhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 150 RTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+ ....++++||++|+| +++++++|.+
T Consensus 149 -------------------------------~-~~~~~~~~Sa~~g~g---i~~l~~~l~~ 174 (179)
T cd01890 149 -------------------------------L-DPSEAILVSAKTGLG---VEDLLEAIVE 174 (179)
T ss_pred -------------------------------C-CcccEEEeeccCCCC---HHHHHHHHHh
Confidence 0 013478999999999 9999999875
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.91 E-value=2.9e-23 Score=157.16 Aligned_cols=151 Identities=17% Similarity=0.216 Sum_probs=103.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc-cc--ccccceeeEEEEecCc-eEEEEECCCchh---------hhhhhHHH
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYF-ES--CTSLKENVGNFTYEKK-NIKIVDLPGEDR---------LRNKFFDQ 75 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~-~~~i~D~~G~~~---------~~~~~~~~ 75 (211)
...++|+++|++|||||||++++++..+. .. .+|.......+.+.+. .+.+|||||+.. +.. .+ .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~-~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRS-TL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHH-HH-H
Confidence 44589999999999999999999987642 22 2455555666677665 899999999832 222 12 2
Q ss_pred hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccc
Q psy1914 76 YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (211)
.+.++|++++|+|++++.. ...... +...+...... ++|+++|+||+|+.+..... ....
T Consensus 117 ~~~~~d~ii~v~D~~~~~~-~~~~~~-~~~~l~~~~~~--~~~viiV~NK~Dl~~~~~~~-------~~~~--------- 176 (204)
T cd01878 117 EVAEADLLLHVVDASDPDY-EEQIET-VEKVLKELGAE--DIPMILVLNKIDLLDDEELE-------ERLE--------- 176 (204)
T ss_pred HHhcCCeEEEEEECCCCCh-hhHHHH-HHHHHHHcCcC--CCCEEEEEEccccCChHHHH-------HHhh---------
Confidence 3567999999999988654 333322 23333322222 38999999999997543221 0000
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++||++|.| ++++++||.+
T Consensus 177 --------------------------~~~~~~~~~Sa~~~~g---i~~l~~~L~~ 202 (204)
T cd01878 177 --------------------------AGRPDAVFISAKTGEG---LDELLEAIEE 202 (204)
T ss_pred --------------------------cCCCceEEEEcCCCCC---HHHHHHHHHh
Confidence 1125789999999999 9999999975
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.91 E-value=1.2e-23 Score=150.40 Aligned_cols=135 Identities=17% Similarity=0.184 Sum_probs=89.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCch-----hhhhhhHHHhhhcCCEEEEEE
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGED-----RLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~~d~ii~v~ 87 (211)
||+++|++|||||||+++|.+..+. ..+|.+ +.+.. .+|||||+. .++. +.. .++++|++++|+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~-----~~~~~---~~iDt~G~~~~~~~~~~~-~~~-~~~~ad~vilv~ 70 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQA-----VEYND---GAIDTPGEYVENRRLYSA-LIV-TAADADVIALVQ 70 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-ccccee-----EEEcC---eeecCchhhhhhHHHHHH-HHH-HhhcCCEEEEEe
Confidence 8999999999999999999987652 223322 23332 689999983 2333 333 478899999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++++.+... .. |.... . .|+++|+||+|+.+.....+....+.+...
T Consensus 71 d~~~~~s~~~--~~-~~~~~------~--~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~--------------------- 118 (142)
T TIGR02528 71 SATDPESRFP--PG-FASIF------V--KPVIGLVTKIDLAEADVDIERAKELLETAG--------------------- 118 (142)
T ss_pred cCCCCCcCCC--hh-HHHhc------c--CCeEEEEEeeccCCcccCHHHHHHHHHHcC---------------------
Confidence 9998765221 22 22221 1 599999999999753222111111111110
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
..+++++||++|+| ++++++||.
T Consensus 119 ----------------~~~~~~~Sa~~~~g---i~~l~~~l~ 141 (142)
T TIGR02528 119 ----------------AEPIFEISSVDEQG---LEALVDYLN 141 (142)
T ss_pred ----------------CCcEEEEecCCCCC---HHHHHHHHh
Confidence 03678999999999 999999985
No 138
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=4.5e-23 Score=166.00 Aligned_cols=155 Identities=19% Similarity=0.190 Sum_probs=107.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEec-CceEEEEECCCchh-------hhhhhHHHhhhcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYE-KKNIKIVDLPGEDR-------LRNKFFDQYKSSA 80 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~-~~~~~i~D~~G~~~-------~~~~~~~~~~~~~ 80 (211)
..|+++|.+|||||||++++++.+. ...+ +|..++.+.+.+. +..+.+||+||... +... +..+++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~-flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHR-FLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHH-HHHHhhhc
Confidence 5789999999999999999997653 2333 4667778888884 45899999999742 2332 23345679
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHHHHHcC-cCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy1914 81 KGIVYVLDSSTVQKTLRDVAESLYVILAD-PQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
+++++|+|+++.++ ++....|...+... ..+.+ +|+++|+||+|+.+...... ..+.....
T Consensus 238 ~vlI~ViD~s~~~s-~e~~~~~~~EL~~~~~~L~~--kp~IIV~NKiDL~~~~~~~~--~~~~~~~~------------- 299 (335)
T PRK12299 238 RLLLHLVDIEAVDP-VEDYKTIRNELEKYSPELAD--KPRILVLNKIDLLDEEEERE--KRAALELA------------- 299 (335)
T ss_pred CEEEEEEcCCCCCC-HHHHHHHHHHHHHhhhhccc--CCeEEEEECcccCCchhHHH--HHHHHHHH-------------
Confidence 99999999997553 55555555544332 11223 89999999999975443221 11111011
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++||++|+| +++++++|.+
T Consensus 300 ----------------------~~~~~i~~iSAktg~G---I~eL~~~L~~ 325 (335)
T PRK12299 300 ----------------------ALGGPVFLISAVTGEG---LDELLRALWE 325 (335)
T ss_pred ----------------------hcCCCEEEEEcCCCCC---HHHHHHHHHH
Confidence 0115679999999999 9999999875
No 139
>PRK04213 GTP-binding protein; Provisional
Probab=99.91 E-value=5.6e-23 Score=155.23 Aligned_cols=160 Identities=16% Similarity=0.270 Sum_probs=99.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccc-cccccceeeEEEEecCceEEEEECCC-----------chhhhhhhHHH
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFE-SCTSLKENVGNFTYEKKNIKIVDLPG-----------EDRLRNKFFDQ 75 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~ 75 (211)
....++|+++|++|||||||+|+|.+..+.. ..|+++.....+.++ .+.+||||| ++.++. .+..
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~ 82 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKD-EIVR 82 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHH-HHHH
Confidence 3457899999999999999999999877643 234444443344444 699999999 456665 4555
Q ss_pred hhh----cCCEEEEEEeCCCchhhHH--------HHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHH
Q psy1914 76 YKS----SAKGIVYVLDSSTVQKTLR--------DVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQK 143 (211)
Q Consensus 76 ~~~----~~d~ii~v~d~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~ 143 (211)
++. .++++++|+|+++...... .....+...+.. .++|+++|+||+|+.+.. .+....+.+
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~~--~~~~~~~~~ 155 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIKNR--DEVLDEIAE 155 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccCcH--HHHHHHHHH
Confidence 553 3578889999865321000 011122222221 238999999999996543 112222222
Q ss_pred HHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 144 ELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++. .. . + ..+..+++++||++| | ++++++||.+
T Consensus 156 ~~~~---~~--~----------------------~--~~~~~~~~~~SA~~g-g---i~~l~~~l~~ 189 (201)
T PRK04213 156 RLGL---YP--P----------------------W--RQWQDIIAPISAKKG-G---IEELKEAIRK 189 (201)
T ss_pred HhcC---Cc--c----------------------c--cccCCcEEEEecccC-C---HHHHHHHHHH
Confidence 2210 00 0 0 011136799999999 9 9999999975
No 140
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.91 E-value=7.7e-23 Score=154.01 Aligned_cols=119 Identities=21% Similarity=0.260 Sum_probs=96.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEec-----Cc--eEEEEECCCchhhhhhhHHHhhhcCC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYE-----KK--NIKIVDLPGEDRLRNKFFDQYKSSAK 81 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~-----~~--~~~i~D~~G~~~~~~~~~~~~~~~~d 81 (211)
+||+++|.++||||||+++++++.+...+ ||++.... .++++ +. .+.+|||+|++.+.. ++..++++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~-l~~~~yr~ad 79 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKS-TRAVFYNQVN 79 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHH-HHHHHhCcCC
Confidence 58999999999999999999999887655 67664433 34553 22 789999999999988 7899999999
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCc----------------CcCCCCCcEEEEEeCCCccCCC
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADP----------------QVQSSRVNILVCCNKQDQTLAK 132 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~p~iiv~nK~Dl~~~~ 132 (211)
++|+|+|++++.+ ++.+..|+..+.... .....++|+++|+||+|+.+.+
T Consensus 80 ~iIlVyDvtn~~S-f~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 80 GIILVHDLTNRKS-SQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred EEEEEEECcChHH-HHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 9999999999665 889988888886531 1122459999999999997654
No 141
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.91 E-value=1.2e-22 Score=151.40 Aligned_cols=165 Identities=21% Similarity=0.253 Sum_probs=109.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc-------------------cccceeeEEEEecCceEEEEECCCchhhhhhhH
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC-------------------TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFF 73 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 73 (211)
+|+++|.+|+|||||+|+|++....... .+.......+.+.+..+.+|||||+..+.. .+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~-~~ 79 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSS-EV 79 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHH-HH
Confidence 4899999999999999999987654322 122222333455566899999999998887 57
Q ss_pred HHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcc
Q psy1914 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKS 153 (211)
Q Consensus 74 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 153 (211)
..+++.+|++++|+|++++.. ....+.+..... .+.|+++|+||+|+..........+.+.+.+........
T Consensus 80 ~~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (189)
T cd00881 80 IRGLSVSDGAILVVDANEGVQ--PQTREHLRIARE------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIST 151 (189)
T ss_pred HHHHHhcCEEEEEEECCCCCc--HHHHHHHHHHHH------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccch
Confidence 788889999999999987543 223333333321 238999999999998644444444444433331110000
Q ss_pred cccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 154 NQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.. ... .-....+++++||++|.| +++++++|.+
T Consensus 152 ~~-------------------~~~--~~~~~~~v~~~Sa~~g~g---i~~l~~~l~~ 184 (189)
T cd00881 152 KE-------------------EGT--RNGLLVPIVPGSALTGIG---VEELLEAIVE 184 (189)
T ss_pred hh-------------------hhc--ccCCcceEEEEecccCcC---HHHHHHHHHh
Confidence 00 000 001337889999999999 9999999875
No 142
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=6.4e-23 Score=164.99 Aligned_cols=155 Identities=20% Similarity=0.253 Sum_probs=105.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecC-ceEEEEECCCchh-------hhhhhHHHhhhcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEK-KNIKIVDLPGEDR-------LRNKFFDQYKSSA 80 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~-~~~~i~D~~G~~~-------~~~~~~~~~~~~~ 80 (211)
..|+++|.+|||||||+++|+..+. ...+ +|..++.+.+.+++ ..+.+||+||... +...++ ..+..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~fl-rhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFL-KHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHH-HHHHhh
Confidence 5799999999999999999998653 3333 46667778888877 6999999999842 222222 234569
Q ss_pred CEEEEEEeCCCch--hhHHHHHHHHHHHHcC-cCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 81 KGIVYVLDSSTVQ--KTLRDVAESLYVILAD-PQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 81 d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+++++|+|+++.+ ..++....+...+... ..+.. +|+++|+||+|+.+.....+..+.+.+.+
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~--kp~IIV~NK~DL~~~~~~~~~~~~l~~~~------------ 302 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAE--KPRIVVLNKIDLLDEEELAELLKELKKAL------------ 302 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhcc--CCEEEEEeCccCCChHHHHHHHHHHHHHc------------
Confidence 9999999998641 2344444443333221 11233 89999999999975532222222221110
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++++||++++| +++++++|.+
T Consensus 303 --------------------------~~~vi~iSAktg~G---I~eL~~~I~~ 326 (329)
T TIGR02729 303 --------------------------GKPVFPISALTGEG---LDELLYALAE 326 (329)
T ss_pred --------------------------CCcEEEEEccCCcC---HHHHHHHHHH
Confidence 14678999999999 9999999875
No 143
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=5e-23 Score=166.97 Aligned_cols=149 Identities=15% Similarity=0.190 Sum_probs=102.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc-cc--ccccceeeEEEEec-CceEEEEECCCc---------hhhhhhhHHHh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYF-ES--CTSLKENVGNFTYE-KKNIKIVDLPGE---------DRLRNKFFDQY 76 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~-~~~~~i~D~~G~---------~~~~~~~~~~~ 76 (211)
..++|+++|.+|+|||||+|+|++.... .. .+|..+....+.+. +..+.+|||||. +.|.. .+ ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~-tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRA-TL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHH-HH-HH
Confidence 4589999999999999999999987642 22 24666666777774 569999999998 23333 22 24
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccc
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQL 156 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (211)
+.++|++++|+|++++.. ...... +..++...... ++|+++|+||+|+.+.... . ... .
T Consensus 266 ~~~ADlil~VvD~s~~~~-~~~~~~-~~~~L~~l~~~--~~piIlV~NK~Dl~~~~~v---~-~~~---~---------- 324 (351)
T TIGR03156 266 VREADLLLHVVDASDPDR-EEQIEA-VEKVLEELGAE--DIPQLLVYNKIDLLDEPRI---E-RLE---E---------- 324 (351)
T ss_pred HHhCCEEEEEEECCCCch-HHHHHH-HHHHHHHhccC--CCCEEEEEEeecCCChHhH---H-HHH---h----------
Confidence 677999999999998654 333322 23333321122 3899999999999643111 1 000 0
Q ss_pred ccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 157 EDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+++.+||++|+| +++|+++|.+
T Consensus 325 --------------------------~~~~~i~iSAktg~G---I~eL~~~I~~ 349 (351)
T TIGR03156 325 --------------------------GYPEAVFVSAKTGEG---LDLLLEAIAE 349 (351)
T ss_pred --------------------------CCCCEEEEEccCCCC---HHHHHHHHHh
Confidence 002468899999999 9999999975
No 144
>PRK15494 era GTPase Era; Provisional
Probab=99.91 E-value=7.3e-23 Score=165.69 Aligned_cols=153 Identities=17% Similarity=0.169 Sum_probs=101.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc----cccceeeEEEEecCceEEEEECCCchhhhhh----h---HHHhh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC----TSLKENVGNFTYEKKNIKIVDLPGEDRLRNK----F---FDQYK 77 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----~---~~~~~ 77 (211)
.+..+|+++|.+|||||||+|+|++.++.... +|.....+.++.++..+.+|||||+...... + ...++
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 34569999999999999999999988764221 3334444567788889999999998432110 1 11236
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
.++|++++|+|+++. +.....++...+.. .+.|.++|+||+|+.+. ...+ +.+.+..
T Consensus 130 ~~aDvil~VvD~~~s---~~~~~~~il~~l~~-----~~~p~IlViNKiDl~~~-~~~~----~~~~l~~---------- 186 (339)
T PRK15494 130 HSADLVLLIIDSLKS---FDDITHNILDKLRS-----LNIVPIFLLNKIDIESK-YLND----IKAFLTE---------- 186 (339)
T ss_pred hhCCEEEEEEECCCC---CCHHHHHHHHHHHh-----cCCCEEEEEEhhcCccc-cHHH----HHHHHHh----------
Confidence 789999999998763 23333334433322 12677899999999643 2222 2221210
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
......++++||++|+| ++++++||.+
T Consensus 187 -----------------------~~~~~~i~~iSAktg~g---v~eL~~~L~~ 213 (339)
T PRK15494 187 -----------------------NHPDSLLFPISALSGKN---IDGLLEYITS 213 (339)
T ss_pred -----------------------cCCCcEEEEEeccCccC---HHHHHHHHHH
Confidence 01115789999999999 9999999975
No 145
>KOG0097|consensus
Probab=99.90 E-value=5.1e-23 Score=141.16 Aligned_cols=148 Identities=18% Similarity=0.271 Sum_probs=117.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccccc-ccceeeEE--EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCT-SLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~-t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+|-+++|.-|+|||+|+.++..++|..+.| |++...++ +++.+. ++.+|||+|+++|+. ..+.|++++.+.++|
T Consensus 12 fkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfra-vtrsyyrgaagalmv 90 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA-VTRSYYRGAAGALMV 90 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHH-HHHHHhccccceeEE
Confidence 578999999999999999999999987775 66665554 566665 889999999999999 799999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++... .+.....|+.+... +.+++..+++++||.||...+++.- ....+.+
T Consensus 91 yditrrs-tynhlsswl~dar~---ltnpnt~i~lignkadle~qrdv~yeeak~fae---------------------- 144 (215)
T KOG0097|consen 91 YDITRRS-TYNHLSSWLTDARN---LTNPNTVIFLIGNKADLESQRDVTYEEAKEFAE---------------------- 144 (215)
T ss_pred EEehhhh-hhhhHHHHHhhhhc---cCCCceEEEEecchhhhhhcccCcHHHHHHHHh----------------------
Confidence 9998743 46777777776543 4556789999999999988776532 2222221
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHH
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQ 205 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~ 205 (211)
++...|.++|||||++ ++..+
T Consensus 145 ----------------engl~fle~saktg~n---vedaf 165 (215)
T KOG0097|consen 145 ----------------ENGLMFLEASAKTGQN---VEDAF 165 (215)
T ss_pred ----------------hcCeEEEEecccccCc---HHHHH
Confidence 1227889999999999 88755
No 146
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.90 E-value=5.1e-23 Score=149.28 Aligned_cols=144 Identities=24% Similarity=0.321 Sum_probs=100.5
Q ss_pred EEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecCceEEEEECCCchhhhh-----hhHHHhhh--cCCEEEE
Q psy1914 16 LSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEKKNIKIVDLPGEDRLRN-----KFFDQYKS--SAKGIVY 85 (211)
Q Consensus 16 i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~--~~d~ii~ 85 (211)
++|.+|+|||||++++++..+ ...++ |.......+.+++..+.+|||||+..+.. .+...++. .+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 579999999999999998763 23333 44445566788878999999999876543 13445553 8999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
|+|++++.. . ..++..+.. .++|+++|+||+|+.+..........+.+.++
T Consensus 81 v~d~~~~~~-~---~~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~------------------- 131 (158)
T cd01879 81 VVDATNLER-N---LYLTLQLLE------LGLPVVVALNMIDEAEKRGIKIDLDKLSELLG------------------- 131 (158)
T ss_pred EeeCCcchh-H---HHHHHHHHH------cCCCEEEEEehhhhcccccchhhHHHHHHhhC-------------------
Confidence 999987543 1 223333322 13899999999999765433222222222111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++++||++|+| +++++++|.+
T Consensus 132 -------------------~~~~~iSa~~~~~---~~~l~~~l~~ 154 (158)
T cd01879 132 -------------------VPVVPTSARKGEG---IDELKDAIAE 154 (158)
T ss_pred -------------------CCeEEEEccCCCC---HHHHHHHHHH
Confidence 5679999999999 9999999875
No 147
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.90 E-value=1.4e-22 Score=146.20 Aligned_cols=154 Identities=15% Similarity=0.195 Sum_probs=109.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE--EEecC--ceEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN--FTYEK--KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~--~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
.+||+++|.+|||||||++++....+...+ ++++..... +.+++ ..+.+||+||+..+.. ++..+.+.++.++.
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~~~~i~ 79 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA-IRRLYYRAVESSLR 79 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH-HHHHHHhhhhEEEE
Confidence 379999999999999999999998854333 555554444 56666 4789999999988888 67778888999999
Q ss_pred EEeCCCchhhHHHHH-HHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVA-ESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
++|.......+.... .+...+..... . +.|+++++||+|+....... ...+.+..
T Consensus 80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~-~--~~p~ivv~nK~D~~~~~~~~----~~~~~~~~----------------- 135 (161)
T TIGR00231 80 VFDIVILVLDVEEILEKQTKEIIHHAE-S--NVPIILVGNKIDLRDAKLKT----HVAFLFAK----------------- 135 (161)
T ss_pred EEEEeeeehhhhhHhHHHHHHHHHhcc-c--CCcEEEEEEcccCCcchhhH----HHHHHHhh-----------------
Confidence 999876522244444 33333332211 1 48999999999997654222 12211110
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
....+++++||++|+| ++++++||.
T Consensus 136 -----------------~~~~~~~~~sa~~~~g---v~~~~~~l~ 160 (161)
T TIGR00231 136 -----------------LNGEPIIPLSAETGKN---IDSAFKIVE 160 (161)
T ss_pred -----------------ccCCceEEeecCCCCC---HHHHHHHhh
Confidence 0114589999999999 999999985
No 148
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.90 E-value=7.2e-23 Score=161.31 Aligned_cols=149 Identities=17% Similarity=0.185 Sum_probs=97.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccc--ccc-ccceeeEE-EEecCceEEEEECCCchhhhhh-------hHHHhhhcCC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFE--SCT-SLKENVGN-FTYEKKNIKIVDLPGEDRLRNK-------FFDQYKSSAK 81 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~--~~~-t~~~~~~~-~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~~~d 81 (211)
+|+++|++|||||||+|+|++.+... ..| |+...... ...++..+.+|||||....... ....++.++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 68999999999999999999987532 222 33333333 3344558999999997532110 1234567899
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchh
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
++++|+|+++... .. .++...+.. .+.|+++|+||+|+.... .....+......
T Consensus 82 vvl~VvD~~~~~~-~~---~~i~~~l~~-----~~~p~ilV~NK~Dl~~~~---~~~~~~~~~~~~-------------- 135 (270)
T TIGR00436 82 LILFVVDSDQWNG-DG---EFVLTKLQN-----LKRPVVLTRNKLDNKFKD---KLLPLIDKYAIL-------------- 135 (270)
T ss_pred EEEEEEECCCCCc-hH---HHHHHHHHh-----cCCCEEEEEECeeCCCHH---HHHHHHHHHHhh--------------
Confidence 9999999988544 22 333343332 238999999999996322 112111111110
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++||++|+| +++|+++|.+
T Consensus 136 --------------------~~~~~v~~iSA~~g~g---i~~L~~~l~~ 161 (270)
T TIGR00436 136 --------------------EDFKDIVPISALTGDN---TSFLAAFIEV 161 (270)
T ss_pred --------------------cCCCceEEEecCCCCC---HHHHHHHHHH
Confidence 0002679999999999 9999999875
No 149
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.90 E-value=3e-22 Score=150.31 Aligned_cols=158 Identities=19% Similarity=0.178 Sum_probs=100.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc----cccc------ccccceeeEEEEec--------------CceEEEEECCCchh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK----YFES------CTSLKENVGNFTYE--------------KKNIKIVDLPGEDR 67 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~----~~~~------~~t~~~~~~~~~~~--------------~~~~~i~D~~G~~~ 67 (211)
++|+++|++|+|||||+++|+... +... ..|.......+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999999731 1111 13444444444443 45899999999987
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHH
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNL 147 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~ 147 (211)
+...+. .....+|++++|+|+++... ... .+.+. +... .+ .|+++|+||+|+..........+.+.+.+..
T Consensus 81 ~~~~~~-~~~~~~d~vi~VvD~~~~~~-~~~-~~~~~-~~~~---~~--~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~ 151 (192)
T cd01889 81 LIRTII-GGAQIIDLMLLVVDATKGIQ-TQT-AECLV-IGEI---LC--KKLIVVLNKIDLIPEEERERKIEKMKKKLQK 151 (192)
T ss_pred HHHHHH-HHHhhCCEEEEEEECCCCcc-HHH-HHHHH-HHHH---cC--CCEEEEEECcccCCHHHHHHHHHHHHHHHHH
Confidence 655333 34556899999999987432 111 11111 1111 12 7999999999997544333333333333221
Q ss_pred H-hhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 148 V-RRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 148 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
. .... ...++++++||++|+| +++|+++|..
T Consensus 152 ~~~~~~-----------------------------~~~~~vi~iSa~~g~g---i~~L~~~l~~ 183 (192)
T cd01889 152 TLEKTR-----------------------------FKNSPIIPVSAKPGGG---EAELGKDLNN 183 (192)
T ss_pred HHHhcC-----------------------------cCCCCEEEEeccCCCC---HHHHHHHHHh
Confidence 0 0000 1126889999999999 9999999875
No 150
>KOG0395|consensus
Probab=99.90 E-value=7.4e-23 Score=153.11 Aligned_cols=156 Identities=17% Similarity=0.251 Sum_probs=125.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
..+||+++|.+|+|||+|..++..+.|...+ ||+...+ ..+.+++. .+.++||+|++.+.. +...+++.++++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~-~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSA-MRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChH-HHHHhhccCcEEEE
Confidence 4689999999999999999999999999887 6665433 34677766 888999999999988 78999999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHH-HHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVK-TLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
||++++..+ |+.+..++..+++.+.... +|+++|+||+|+...+.+.... ..+..
T Consensus 81 Vysitd~~S-F~~~~~l~~~I~r~~~~~~--~PivlVGNK~Dl~~~R~V~~eeg~~la~--------------------- 136 (196)
T KOG0395|consen 81 VYSITDRSS-FEEAKQLREQILRVKGRDD--VPIILVGNKCDLERERQVSEEEGKALAR--------------------- 136 (196)
T ss_pred EEECCCHHH-HHHHHHHHHHHHHhhCcCC--CCEEEEEEcccchhccccCHHHHHHHHH---------------------
Confidence 999999665 9999999998866544444 8999999999998755543222 22221
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+.|+++||+...+ ++++|.-|..
T Consensus 137 -----------------~~~~~f~E~Sak~~~~---v~~~F~~L~r 162 (196)
T KOG0395|consen 137 -----------------SWGCAFIETSAKLNYN---VDEVFYELVR 162 (196)
T ss_pred -----------------hcCCcEEEeeccCCcC---HHHHHHHHHH
Confidence 2447899999999998 9999977653
No 151
>KOG0077|consensus
Probab=99.90 E-value=8e-23 Score=143.66 Aligned_cols=174 Identities=18% Similarity=0.240 Sum_probs=139.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
-++.-|++++|..|+|||||++.|-.+......||..+....+.+.+.+++.+|++||..-+. .|..|+..++++++.+
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr-~wkdyf~~v~~iv~lv 95 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARR-VWKDYFPQVDAIVYLV 95 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHH-HHHHHHhhhceeEeee
Confidence 356789999999999999999999999999999999999999999999999999999999988 7999999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|+-|.+. +.+++..+..++....++. +|+++.+||+|.+.+....+....+. + .............
T Consensus 96 da~d~er-~~es~~eld~ll~~e~la~--vp~lilgnKId~p~a~se~~l~~~l~--l--~~~t~~~~~v~~~------- 161 (193)
T KOG0077|consen 96 DAYDQER-FAESKKELDALLSDESLAT--VPFLILGNKIDIPYAASEDELRFHLG--L--SNFTTGKGKVNLT------- 161 (193)
T ss_pred ehhhHHH-hHHHHHHHHHHHhHHHHhc--CcceeecccccCCCcccHHHHHHHHH--H--HHHhccccccccc-------
Confidence 9999776 8999999999888776777 99999999999998774443333222 1 1111111100000
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..-.+++.++.||...+.| ..+.+.|+..
T Consensus 162 -----------~~~~rp~evfmcsi~~~~g---y~e~fkwl~q 190 (193)
T KOG0077|consen 162 -----------DSNVRPLEVFMCSIVRKMG---YGEGFKWLSQ 190 (193)
T ss_pred -----------CCCCCeEEEEEEEEEccCc---cceeeeehhh
Confidence 0114668999999999999 9999999864
No 152
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.90 E-value=2.7e-22 Score=150.74 Aligned_cols=111 Identities=23% Similarity=0.263 Sum_probs=80.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc--Ccccccc-------------cccc----eeeEEEEecCceEEEEECCCchhhhhhh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY--SKYFESC-------------TSLK----ENVGNFTYEKKNIKIVDLPGEDRLRNKF 72 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~--~~~~~~~-------------~t~~----~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 72 (211)
.+|+++|.+++|||||+++|+. +.+...+ ++.+ .....+..++..+.+|||||++.|.. .
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~ 81 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGG-E 81 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHH-H
Confidence 4799999999999999999997 4443322 1111 22233555666999999999999988 6
Q ss_pred HHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 73 FDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 73 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
+..+++++|++++|+|+++.. ......++..... .++|+++|+||+|+...
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~--~~~~~~~~~~~~~------~~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGP--MPQTRFVLKKALE------LGLKPIVVINKIDRPDA 132 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCc--cHHHHHHHHHHHH------cCCCEEEEEECCCCCCC
Confidence 888999999999999998732 2333333333322 23899999999999754
No 153
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.89 E-value=1.7e-22 Score=149.13 Aligned_cols=156 Identities=21% Similarity=0.192 Sum_probs=103.4
Q ss_pred EEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEec-CceEEEEECCCchhhhh---hh---HHHhhhcCCEEEE
Q psy1914 16 LSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYE-KKNIKIVDLPGEDRLRN---KF---FDQYKSSAKGIVY 85 (211)
Q Consensus 16 i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~---~~---~~~~~~~~d~ii~ 85 (211)
++|++|||||||+++|.+... ...+ +|..+....+.++ +..+.+|||||+..... .+ +..+++++|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999998764 2222 3455566667777 77999999999732110 01 2234667999999
Q ss_pred EEeCCCch-----hhHHHHHHHHHHHHcCcCc----CCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccc
Q psy1914 86 VLDSSTVQ-----KTLRDVAESLYVILADPQV----QSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQL 156 (211)
Q Consensus 86 v~d~~~~~-----~~~~~~~~~~~~~~~~~~~----~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (211)
|+|++++. ..+.+...+...+...... ...++|+++|+||+|+.......... .....
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~---------- 147 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELA---------- 147 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHh----------
Confidence 99998863 3355555555554432110 00238999999999997554332211 00000
Q ss_pred ccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 157 EDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
......++++||++|.| +++++++|.++
T Consensus 148 ------------------------~~~~~~~~~~Sa~~~~g---l~~l~~~l~~~ 175 (176)
T cd01881 148 ------------------------LEEGAEVVPISAKTEEG---LDELIRAIYEL 175 (176)
T ss_pred ------------------------cCCCCCEEEEehhhhcC---HHHHHHHHHhh
Confidence 01225689999999999 99999998753
No 154
>KOG0393|consensus
Probab=99.89 E-value=7.1e-24 Score=155.78 Aligned_cols=116 Identities=15% Similarity=0.169 Sum_probs=94.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEec-Cc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYE-KK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~-~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..+|++++|..++|||+|+..+..+.|+..+ ||.-.++.. +.++ ++ .+.+|||+|++.|.. +++..++++|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDr-lRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDR-LRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCccccc-ccccCCCCCCEEE
Confidence 4689999999999999999999999999888 555445544 7774 66 789999999999988 7778899999999
Q ss_pred EEEeCCCchhhHHHHH-HHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 85 YVLDSSTVQKTLRDVA-ESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
+||++.++++ +..+. .|+.++.... ++.|+++||+|.||...
T Consensus 82 ~cfsv~~p~S-~~nv~~kW~pEi~~~c----p~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 82 LCFSVVSPES-FENVKSKWIPEIKHHC----PNVPIILVGTKADLRDD 124 (198)
T ss_pred EEEEcCChhh-HHHHHhhhhHHHHhhC----CCCCEEEEeehHHhhhC
Confidence 9999999887 66654 4555444332 55999999999999833
No 155
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=1.8e-21 Score=142.90 Aligned_cols=156 Identities=16% Similarity=0.148 Sum_probs=101.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc--ccccccc--eeeEEEEecCceEEEEECCCchhh----------hhhhHHHh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYF--ESCTSLK--ENVGNFTYEKKNIKIVDLPGEDRL----------RNKFFDQY 76 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~--~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~----------~~~~~~~~ 76 (211)
.++|+++|.+|+|||||++++++.... ...+++. .....+..++..+.+|||||.... .......+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 578999999999999999999987632 2223222 223446677778999999997432 11011234
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC--CHHHHHHHHHHHHHHHhhhccc
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK--SSSVVKTLLQKELNLVRRTKSN 154 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~ 154 (211)
+..+|++++|+|++++.+ . .....+..... .+.|+++++||+|+.+.. ......+.+.+.+..
T Consensus 82 ~~~~d~vi~v~d~~~~~~-~-~~~~~~~~~~~------~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~------- 146 (174)
T cd01895 82 IERADVVLLVIDATEGIT-E-QDLRIAGLILE------EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPF------- 146 (174)
T ss_pred HhhcCeEEEEEeCCCCcc-h-hHHHHHHHHHh------cCCCEEEEEeccccCCccHHHHHHHHHHHHhhccc-------
Confidence 567999999999988654 2 22222222221 238999999999997653 122222222221110
Q ss_pred ccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 155 QLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
....+++++||++|+| ++++++++.++
T Consensus 147 ---------------------------~~~~~~~~~Sa~~~~~---i~~~~~~l~~~ 173 (174)
T cd01895 147 ---------------------------LDYAPIVFISALTGQG---VDKLFDAIDEV 173 (174)
T ss_pred ---------------------------ccCCceEEEeccCCCC---HHHHHHHHHHh
Confidence 0125789999999999 99999998763
No 156
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.89 E-value=8.1e-22 Score=140.83 Aligned_cols=152 Identities=26% Similarity=0.329 Sum_probs=106.4
Q ss_pred EEcCCCCCHHHHHHHHHcCcc-cccccccceeeEEEEec----CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCC
Q psy1914 16 LSGLSLSGKTLLFARLVYSKY-FESCTSLKENVGNFTYE----KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSS 90 (211)
Q Consensus 16 i~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~~----~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~ 90 (211)
++|++|+|||||++++.+... .....++.......... +..+.+||+||+..+.. .+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRS-LRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHh-HHHHHhcCCCEEEEEEECc
Confidence 589999999999999998776 33333333555544443 44899999999988877 5677888999999999999
Q ss_pred CchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccC
Q psy1914 91 TVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLG 170 (211)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (211)
++.. ......++....... ...++|+++++||+|+........... .. ...
T Consensus 80 ~~~~-~~~~~~~~~~~~~~~--~~~~~~~ivv~nk~D~~~~~~~~~~~~-~~-~~~------------------------ 130 (157)
T cd00882 80 DRES-FENVKEWLLLILINK--EGENIPIILVGNKIDLPEERVVSEEEL-AE-QLA------------------------ 130 (157)
T ss_pred CHHH-HHHHHHHHHHHHHhh--ccCCCcEEEEEeccccccccchHHHHH-HH-HHH------------------------
Confidence 8554 555555422222221 223499999999999976654433210 00 000
Q ss_pred CCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 171 NPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++++|+++|.| ++++++||.+
T Consensus 131 ----------~~~~~~~~~~s~~~~~~---i~~~~~~l~~ 157 (157)
T cd00882 131 ----------KELGVPYFETSAKTGEN---VEELFEELAE 157 (157)
T ss_pred ----------hhcCCcEEEEecCCCCC---hHHHHHHHhC
Confidence 01237889999999999 9999999864
No 157
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=7.8e-22 Score=164.70 Aligned_cols=156 Identities=20% Similarity=0.226 Sum_probs=105.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecCceEEEEECCCchh-------hhhhhHHHhhhcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEKKNIKIVDLPGEDR-------LRNKFFDQYKSSA 80 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~~ 80 (211)
-..|+++|.+|||||||+|+|++.+. ...+ +|..++.+.+.+++..+.+||+||... ....++. ++.++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLr-hiera 237 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLR-HIERC 237 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHH-HHHhc
Confidence 36899999999999999999998654 3344 466678888888888999999999632 1121232 45679
Q ss_pred CEEEEEEeCCCch------hhHHHHHHHHHHHHcCc-------CcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHH
Q psy1914 81 KGIVYVLDSSTVQ------KTLRDVAESLYVILADP-------QVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNL 147 (211)
Q Consensus 81 d~ii~v~d~~~~~------~~~~~~~~~~~~~~~~~-------~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~ 147 (211)
+++++|+|+++.+ ..+..+...+....... .+. ++|+++|+||+|+.+.... .+.+...+..
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~--~kP~IVVlNKiDL~da~el---~e~l~~~l~~ 312 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLA--ERPRLVVLNKIDVPDAREL---AEFVRPELEA 312 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhc--CCCEEEEEECccchhhHHH---HHHHHHHHHH
Confidence 9999999997532 12333333333332100 122 3899999999999744322 2222211210
Q ss_pred HhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 148 VRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++++||++|+| +++|++||.+
T Consensus 313 -----------------------------------~g~~Vf~ISA~tgeG---LdEL~~~L~e 337 (500)
T PRK12296 313 -----------------------------------RGWPVFEVSAASREG---LRELSFALAE 337 (500)
T ss_pred -----------------------------------cCCeEEEEECCCCCC---HHHHHHHHHH
Confidence 115789999999999 9999999875
No 158
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=1e-21 Score=165.74 Aligned_cols=156 Identities=16% Similarity=0.146 Sum_probs=103.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc--cccccccc--eeeEEEEecCceEEEEECCCch----------hhhhhhHHH
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSLK--ENVGNFTYEKKNIKIVDLPGED----------RLRNKFFDQ 75 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~ 75 (211)
..++|+++|.+|||||||+|+|++... ....++++ .....+.+++..+.+|||||.. .+.......
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 358999999999999999999998764 33334333 3344567788889999999962 233211233
Q ss_pred hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccc
Q psy1914 76 YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (211)
+++++|++++|+|+++..+ .+.. .++..+.. .++|+++|+||+|+.+..........+.+.+.
T Consensus 290 ~i~~ad~vilV~Da~~~~s-~~~~-~~~~~~~~------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~--------- 352 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPIS-EQDQ-RVLSMVIE------AGRALVLAFNKWDLVDEDRRYYLEREIDRELA--------- 352 (472)
T ss_pred HHhcCCEEEEEEeCCCCCC-HHHH-HHHHHHHH------cCCCEEEEEECcccCChhHHHHHHHHHHHhcc---------
Confidence 5688999999999988544 3222 33333322 23899999999999753222211122211111
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
. ....+++++||++|.| ++++++.|.+
T Consensus 353 ------------------------~-~~~~~~~~~SAk~g~g---v~~lf~~i~~ 379 (472)
T PRK03003 353 ------------------------Q-VPWAPRVNISAKTGRA---VDKLVPALET 379 (472)
T ss_pred ------------------------c-CCCCCEEEEECCCCCC---HHHHHHHHHH
Confidence 0 0114678899999999 9999998864
No 159
>PLN00023 GTP-binding protein; Provisional
Probab=99.88 E-value=1.3e-21 Score=154.60 Aligned_cols=121 Identities=22% Similarity=0.243 Sum_probs=96.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecC---------------ceEEEEECCCchhhhh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEK---------------KNIKIVDLPGEDRLRN 70 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~---------------~~~~i~D~~G~~~~~~ 70 (211)
...+||+++|..|||||||++++.++.+...+ +|++... ..+.+++ ..+.||||+|++.|+.
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 34689999999999999999999999887665 7777654 3455532 2689999999999998
Q ss_pred hhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCc---------CCCCCcEEEEEeCCCccCC
Q psy1914 71 KFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQV---------QSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 71 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~p~iiv~nK~Dl~~~ 131 (211)
++..|+++++++|+|+|+++.. ++..+..|+..+...... ...++|++||+||+||...
T Consensus 99 -L~~~yyr~AdgiILVyDITdr~-SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 99 -CRSLFYSQINGVIFVHDLSQRR-TKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred -hhHHhccCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 8999999999999999999955 488888888877654211 0124899999999999754
No 160
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=2.8e-21 Score=165.53 Aligned_cols=158 Identities=21% Similarity=0.261 Sum_probs=108.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEecCc-eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYEKK-NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~~~-~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+.++|+++|++++|||||+++|.+..+.... +.++. ....+.+++. .+.+||||||+.|.. ++..++..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~-~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTS-MRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhh-HHHhhhccCCEEE
Confidence 35689999999999999999999987765433 32333 3334566555 899999999999988 6777888899999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|+|+++.. ..+..+.+..... .++|+++++||+|+.+.. .......+.. ... ..
T Consensus 164 LVVda~dgv--~~qT~e~i~~~~~------~~vPiIVviNKiDl~~~~-~e~v~~~L~~-~g~---~~------------ 218 (587)
T TIGR00487 164 LVVAADDGV--MPQTIEAISHAKA------ANVPIIVAINKIDKPEAN-PDRVKQELSE-YGL---VP------------ 218 (587)
T ss_pred EEEECCCCC--CHhHHHHHHHHHH------cCCCEEEEEECcccccCC-HHHHHHHHHH-hhh---hH------------
Confidence 999997632 2333344333221 238999999999997532 2222222221 110 00
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
......++++++||++|+| +++++++|.
T Consensus 219 --------------~~~~~~~~~v~iSAktGeG---I~eLl~~I~ 246 (587)
T TIGR00487 219 --------------EDWGGDTIFVPVSALTGDG---IDELLDMIL 246 (587)
T ss_pred --------------HhcCCCceEEEEECCCCCC---hHHHHHhhh
Confidence 0011236889999999999 999999985
No 161
>KOG0083|consensus
Probab=99.88 E-value=1.7e-23 Score=142.02 Aligned_cols=148 Identities=18% Similarity=0.255 Sum_probs=114.6
Q ss_pred EEEcCCCCCHHHHHHHHHcCcccccc--cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 15 LLSGLSLSGKTLLFARLVYSKYFESC--TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 15 ~i~G~~~~GKSsli~~l~~~~~~~~~--~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
+++|.+++|||+|+-++..+.|.... .|.|..+. .++.+++ ++++|||+|+++|++ ....|++++|++++++|
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrs-vt~ayyrda~allllyd 79 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRS-VTHAYYRDADALLLLYD 79 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhh-hhHhhhcccceeeeeee
Confidence 36899999999999999887774332 55555443 4677776 889999999999999 78899999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC-HHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS-SSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
+.+..+ ++....|+..+.... +..+.+.+++||+|+.+.+. ..+.-+.+.+.+.
T Consensus 80 iankas-fdn~~~wlsei~ey~---k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~--------------------- 134 (192)
T KOG0083|consen 80 IANKAS-FDNCQAWLSEIHEYA---KEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYG--------------------- 134 (192)
T ss_pred cccchh-HHHHHHHHHHHHHHH---HhhHhHhhhccccccchhhccccchHHHHHHHHC---------------------
Confidence 998665 999999998886542 23478999999999976443 2333444554444
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHH
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWM 208 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i 208 (211)
++|.++|||||-+ ++..+--|
T Consensus 135 -----------------ipfmetsaktg~n---vd~af~~i 155 (192)
T KOG0083|consen 135 -----------------IPFMETSAKTGFN---VDLAFLAI 155 (192)
T ss_pred -----------------CCceecccccccc---HhHHHHHH
Confidence 7889999999998 88766544
No 162
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.88 E-value=3.9e-21 Score=143.75 Aligned_cols=160 Identities=18% Similarity=0.218 Sum_probs=106.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc--cc-------------------cccccceeeEEEE--ecCceEEEEECCCch
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY--FE-------------------SCTSLKENVGNFT--YEKKNIKIVDLPGED 66 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~--~~-------------------~~~t~~~~~~~~~--~~~~~~~i~D~~G~~ 66 (211)
+..+|+++|+.++|||||+.+|+...- .. ...|+......+. ..+..++++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 457899999999999999999995331 10 0023333444455 556699999999999
Q ss_pred hhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHH
Q psy1914 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 67 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~ 146 (211)
.|..+ ....+..+|++|+|+|+.+... .+..+.+..+.. .++|+++|+||+|+. .....+..+++.+.+-
T Consensus 82 ~f~~~-~~~~~~~~D~ailvVda~~g~~--~~~~~~l~~~~~------~~~p~ivvlNK~D~~-~~~~~~~~~~~~~~l~ 151 (188)
T PF00009_consen 82 DFIKE-MIRGLRQADIAILVVDANDGIQ--PQTEEHLKILRE------LGIPIIVVLNKMDLI-EKELEEIIEEIKEKLL 151 (188)
T ss_dssp HHHHH-HHHHHTTSSEEEEEEETTTBST--HHHHHHHHHHHH------TT-SEEEEEETCTSS-HHHHHHHHHHHHHHHH
T ss_pred ceeec-ccceecccccceeeeecccccc--cccccccccccc------cccceEEeeeeccch-hhhHHHHHHHHHHHhc
Confidence 99885 5556788999999999987433 344444444433 238999999999998 2112222222221120
Q ss_pred HHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 147 LVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
... ...+ ...++++.+||++|.| +++|++.|.+
T Consensus 152 --~~~---~~~~-----------------------~~~~~vi~~Sa~~g~g---i~~Ll~~l~~ 184 (188)
T PF00009_consen 152 --KEY---GENG-----------------------EEIVPVIPISALTGDG---IDELLEALVE 184 (188)
T ss_dssp --HHT---TSTT-----------------------TSTEEEEEEBTTTTBT---HHHHHHHHHH
T ss_pred --ccc---ccCc-----------------------cccceEEEEecCCCCC---HHHHHHHHHH
Confidence 000 0000 0138999999999999 9999999875
No 163
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=3.8e-21 Score=158.64 Aligned_cols=152 Identities=20% Similarity=0.231 Sum_probs=101.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEec-CceEEEEECCCchh-------hhhhhHHHhhhcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYE-KKNIKIVDLPGEDR-------LRNKFFDQYKSSA 80 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~-~~~~~i~D~~G~~~-------~~~~~~~~~~~~~ 80 (211)
..|+++|.+|||||||++++++.+. ...+ +|..++...+.++ +..+.+||+||... +...+ -..+.++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~f-Lrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQF-LRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHH-HHHHhhC
Confidence 3899999999999999999998664 2333 4666777778877 56999999999732 12212 2234569
Q ss_pred CEEEEEEeCCCch--hhHHHHHHHHHHHHcC-cCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 81 KGIVYVLDSSTVQ--KTLRDVAESLYVILAD-PQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 81 d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+++++|+|+++.+ ..++....+...+... ..+. ++|+++|+||+|+... .+..+.+.+.+.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~--~kP~IVV~NK~DL~~~---~e~l~~l~~~l~----------- 301 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLL--ERPQIVVANKMDLPEA---EENLEEFKEKLG----------- 301 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhcc--CCcEEEEEeCCCCcCC---HHHHHHHHHHhC-----------
Confidence 9999999997631 2233333333333221 1123 3899999999998432 111122221111
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++++||++|+| +++|+++|.+
T Consensus 302 ---------------------------~~i~~iSA~tgeG---I~eL~~~L~~ 324 (424)
T PRK12297 302 ---------------------------PKVFPISALTGQG---LDELLYAVAE 324 (424)
T ss_pred ---------------------------CcEEEEeCCCCCC---HHHHHHHHHH
Confidence 4678999999999 9999999865
No 164
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.88 E-value=1.5e-21 Score=163.42 Aligned_cols=144 Identities=16% Similarity=0.160 Sum_probs=103.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--ccccc--ccceeeEEEEecCceEEEEECCCchhhhhh-------hHHHhh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY--FESCT--SLKENVGNFTYEKKNIKIVDLPGEDRLRNK-------FFDQYK 77 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~ 77 (211)
+..++|+++|++|+|||||+|+|++... ....+ |.......+.+++..+.+|||||+..+... ....++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 4578999999999999999999998764 34444 333344557788889999999998643320 123357
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+.+|++++|+|++++.+ ... ...+.. . .++|+++|+||+|+.+..... .
T Consensus 293 ~~aD~il~VvD~s~~~s-~~~-~~~l~~------~--~~~piiiV~NK~DL~~~~~~~----------~----------- 341 (449)
T PRK05291 293 EEADLVLLVLDASEPLT-EED-DEILEE------L--KDKPVIVVLNKADLTGEIDLE----------E----------- 341 (449)
T ss_pred HhCCEEEEEecCCCCCC-hhH-HHHHHh------c--CCCCcEEEEEhhhccccchhh----------h-----------
Confidence 78999999999988654 332 222222 1 238999999999997543221 0
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++||++|+| +++++++|.+
T Consensus 342 ------------------------~~~~~~i~iSAktg~G---I~~L~~~L~~ 367 (449)
T PRK05291 342 ------------------------ENGKPVIRISAKTGEG---IDELREAIKE 367 (449)
T ss_pred ------------------------ccCCceEEEEeeCCCC---HHHHHHHHHH
Confidence 0114678999999999 9999999865
No 165
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=2e-21 Score=140.58 Aligned_cols=144 Identities=17% Similarity=0.196 Sum_probs=95.9
Q ss_pred EEEcCCCCCHHHHHHHHHcCcc--ccccccc--ceeeEEEEecCceEEEEECCCchhhhh----h---hHHHhhhcCCEE
Q psy1914 15 LLSGLSLSGKTLLFARLVYSKY--FESCTSL--KENVGNFTYEKKNIKIVDLPGEDRLRN----K---FFDQYKSSAKGI 83 (211)
Q Consensus 15 ~i~G~~~~GKSsli~~l~~~~~--~~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~~~~----~---~~~~~~~~~d~i 83 (211)
+++|.+|+|||||+++|++... ....+.+ ........+++..+.+|||||+..+.. . .+..+++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 4799999999999999998652 2333322 233445666777899999999876432 0 233456789999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
++|+|+.++..... ..+...++. .+.|+++|+||+|+.+.... ...+. .+.
T Consensus 81 i~v~d~~~~~~~~~---~~~~~~~~~-----~~~piiiv~nK~D~~~~~~~---~~~~~-~~~----------------- 131 (157)
T cd01894 81 LFVVDGREGLTPAD---EEIAKYLRK-----SKKPVILVVNKVDNIKEEDE---AAEFY-SLG----------------- 131 (157)
T ss_pred EEEEeccccCCccH---HHHHHHHHh-----cCCCEEEEEECcccCChHHH---HHHHH-hcC-----------------
Confidence 99999976433111 122333322 12899999999999754322 11111 000
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
. .+++++||++|+| +++++++|.+
T Consensus 132 -------------------~-~~~~~~Sa~~~~g---v~~l~~~l~~ 155 (157)
T cd01894 132 -------------------F-GEPIPISAEHGRG---IGDLLDAILE 155 (157)
T ss_pred -------------------C-CCeEEEecccCCC---HHHHHHHHHh
Confidence 0 2468899999999 9999999875
No 166
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.88 E-value=5.1e-21 Score=142.06 Aligned_cols=147 Identities=18% Similarity=0.257 Sum_probs=93.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccc-ccccccc--eeeEEEEecCceEEEEECCCch----------hhhhhhHH
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYF-ESCTSLK--ENVGNFTYEKKNIKIVDLPGED----------RLRNKFFD 74 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~-~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~ 74 (211)
+...++|+++|++|+|||||+|++++..+. ...++.+ .....+..+ ..+.+|||||.. .+.. +..
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~-~~~ 92 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQK-LIE 92 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHH-HHH
Confidence 467899999999999999999999987632 2223322 222233443 379999999952 2333 233
Q ss_pred Hhhh---cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhh
Q psy1914 75 QYKS---SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRT 151 (211)
Q Consensus 75 ~~~~---~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 151 (211)
.+++ .++++++|+|++++.. .... .+...+.. .++|+++|+||+|+..........+.+.+.+..
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~--~~~~-~~~~~~~~-----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~---- 160 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLK--ELDL-EMLEWLRE-----RGIPVLIVLTKADKLKKSELNKQLKKIKKALKK---- 160 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCC--HHHH-HHHHHHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhh----
Confidence 4554 3579999999976432 1111 22233322 238999999999997544444444444444431
Q ss_pred cccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCC
Q psy1914 152 KSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSAS 197 (211)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g 197 (211)
...+..++++||++|+|
T Consensus 161 -----------------------------~~~~~~v~~~Sa~~g~g 177 (179)
T TIGR03598 161 -----------------------------DADDPSVQLFSSLKKTG 177 (179)
T ss_pred -----------------------------ccCCCceEEEECCCCCC
Confidence 01225789999999999
No 167
>PRK11058 GTPase HflX; Provisional
Probab=99.88 E-value=3e-21 Score=159.99 Aligned_cols=151 Identities=17% Similarity=0.200 Sum_probs=98.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-ccc--cccceeeEEEEecCc-eEEEEECCCchhh-hhhhHH------HhhhcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYF-ESC--TSLKENVGNFTYEKK-NIKIVDLPGEDRL-RNKFFD------QYKSSA 80 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~-~~~--~t~~~~~~~~~~~~~-~~~i~D~~G~~~~-~~~~~~------~~~~~~ 80 (211)
++|+++|.+|||||||+|+|++.+.. ... .|..+....+.+.+. .+.+|||||..+. ....+. ..++.+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 69999999999999999999987642 222 455555666777665 8899999998431 111122 235779
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccch
Q psy1914 81 KGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
|++++|+|++++.. .... ..+..++..... .++|+++|+||+|+...... .+.. .. .
T Consensus 278 DlIL~VvDaS~~~~-~e~l-~~v~~iL~el~~--~~~pvIiV~NKiDL~~~~~~-----~~~~-~~-------~------ 334 (426)
T PRK11058 278 TLLLHVVDAADVRV-QENI-EAVNTVLEEIDA--HEIPTLLVMNKIDMLDDFEP-----RIDR-DE-------E------ 334 (426)
T ss_pred CEEEEEEeCCCccH-HHHH-HHHHHHHHHhcc--CCCCEEEEEEcccCCCchhH-----HHHH-Hh-------c------
Confidence 99999999998653 3332 222222222111 23899999999999643111 0110 00 0
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.. ..++.+||++|+| +++|+++|.+
T Consensus 335 ---------------------~~-~~~v~ISAktG~G---IdeL~e~I~~ 359 (426)
T PRK11058 335 ---------------------NK-PIRVWLSAQTGAG---IPLLFQALTE 359 (426)
T ss_pred ---------------------CC-CceEEEeCCCCCC---HHHHHHHHHH
Confidence 00 1247799999999 9999999875
No 168
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=3.8e-21 Score=160.97 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=102.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc--cccccccc--eeeEEEEecCceEEEEECCCchhhhh----------hhHHH
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSLK--ENVGNFTYEKKNIKIVDLPGEDRLRN----------KFFDQ 75 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~ 75 (211)
..++|+++|.+|+|||||+|+|++... ....+.+. .....+.+++..+.+|||||+.+... .....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 457999999999999999999998763 23333222 23344667777999999999743321 11233
Q ss_pred hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC-CCCHHHHHHHHHHHHHHHhhhccc
Q psy1914 76 YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL-AKSSSVVKTLLQKELNLVRRTKSN 154 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~l~~~~~~~~~~~~~ 154 (211)
+++.+|++++|+|++++.+ .+....+..+.. .++|+++|+||+|+.. .....+..+.+...+..
T Consensus 251 ~~~~ad~~ilV~D~~~~~~--~~~~~~~~~~~~------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~------- 315 (429)
T TIGR03594 251 AIERADVVLLVLDATEGIT--EQDLRIAGLILE------AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPF------- 315 (429)
T ss_pred HHHhCCEEEEEEECCCCcc--HHHHHHHHHHHH------cCCcEEEEEECcccCCCHHHHHHHHHHHHHhccc-------
Confidence 5788999999999987543 222233333322 2389999999999972 11122222222211110
Q ss_pred ccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 155 QLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-..+++++|||++|.| +++++++|.+
T Consensus 316 ---------------------------~~~~~vi~~SA~~g~~---v~~l~~~i~~ 341 (429)
T TIGR03594 316 ---------------------------LDFAPIVFISALTGQG---VDKLLDAIDE 341 (429)
T ss_pred ---------------------------CCCCceEEEeCCCCCC---HHHHHHHHHH
Confidence 0126789999999999 9999999865
No 169
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.87 E-value=3.2e-21 Score=139.40 Aligned_cols=143 Identities=15% Similarity=0.148 Sum_probs=98.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc--ccccccc--eeeEEEEecCceEEEEECCCchhhhhh-------hHHHhhhc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYF--ESCTSLK--ENVGNFTYEKKNIKIVDLPGEDRLRNK-------FFDQYKSS 79 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~--~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~~ 79 (211)
.++|+++|++|+|||||++++.+.... ...+++. .....+.+++..+.+|||||+..+... ....++..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 368999999999999999999987642 2233332 233445666668999999997543220 12235567
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
+|++++|+|++++.. ......+ .. . .+.|+++|+||+|+.+.... ..
T Consensus 81 ~~~~v~v~d~~~~~~-~~~~~~~-~~------~--~~~~vi~v~nK~D~~~~~~~------~~----------------- 127 (157)
T cd04164 81 ADLVLFVIDASRGLD-EEDLEIL-EL------P--ADKPIIVVLNKSDLLPDSEL------LS----------------- 127 (157)
T ss_pred CCEEEEEEECCCCCC-HHHHHHH-Hh------h--cCCCEEEEEEchhcCCcccc------cc-----------------
Confidence 999999999997554 2222111 11 1 23899999999999754432 00
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....+++++||++|.| +++++++|.+
T Consensus 128 ---------------------~~~~~~~~~~Sa~~~~~---v~~l~~~l~~ 154 (157)
T cd04164 128 ---------------------LLAGKPIIAISAKTGEG---LDELKEALLE 154 (157)
T ss_pred ---------------------ccCCCceEEEECCCCCC---HHHHHHHHHH
Confidence 01226789999999999 9999999875
No 170
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.87 E-value=4.2e-21 Score=145.22 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=96.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc---cccc---cccceeeEEEEec---------------------------C----
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY---FESC---TSLKENVGNFTYE---------------------------K---- 54 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~---~~~~---~t~~~~~~~~~~~---------------------------~---- 54 (211)
++|+++|+.|+|||||+.++.+-.. .... .++......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999975421 1100 1111111111111 2
Q ss_pred --ceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC
Q psy1914 55 --KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK 132 (211)
Q Consensus 55 --~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 132 (211)
..+.+|||||++.+... +...+..+|++++|+|++++.. ..+....+..+... .. .|+++|+||+|+.+..
T Consensus 81 ~~~~i~~iDtPG~~~~~~~-~~~~~~~~D~~llVvd~~~~~~-~~~t~~~l~~~~~~---~~--~~iiivvNK~Dl~~~~ 153 (203)
T cd01888 81 LVRHVSFVDCPGHEILMAT-MLSGAAVMDGALLLIAANEPCP-QPQTSEHLAALEIM---GL--KHIIIVQNKIDLVKEE 153 (203)
T ss_pred cccEEEEEECCChHHHHHH-HHHhhhcCCEEEEEEECCCCCC-CcchHHHHHHHHHc---CC--CcEEEEEEchhccCHH
Confidence 47899999999988874 5556677999999999987321 11222222222111 11 4799999999997433
Q ss_pred CHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 133 SSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
......+.+.+.+.. . ....++++++||++|+| +++|+++|.+
T Consensus 154 ~~~~~~~~i~~~~~~---~-----------------------------~~~~~~i~~vSA~~g~g---i~~L~~~l~~ 196 (203)
T cd01888 154 QALENYEQIKKFVKG---T-----------------------------IAENAPIIPISAQLKYN---IDVLLEYIVK 196 (203)
T ss_pred HHHHHHHHHHHHHhc---c-----------------------------ccCCCcEEEEeCCCCCC---HHHHHHHHHH
Confidence 222222222221110 0 01126789999999999 9999999875
No 171
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.87 E-value=5.6e-21 Score=146.09 Aligned_cols=120 Identities=26% Similarity=0.256 Sum_probs=92.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccccc-ccceeeEEEEecC----ceEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESCT-SLKENVGNFTYEK----KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~-t~~~~~~~~~~~~----~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
.+||+++|++|||||||+++|.++.+...++ |++.......... ..+.+|||+|++.++. ++..|+.+++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~-~~~~y~~~~~~~l~ 83 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRS-LRPEYYRGANGILI 83 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHH-HHHHHhcCCCEEEE
Confidence 4899999999999999999999999987664 5454444432222 2699999999999999 89999999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS 134 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 134 (211)
|+|..+..+..+....|...+..... .+.|+++|+||+|+......
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~---~~~~iilv~nK~Dl~~~~~~ 129 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAP---DDVPILLVGNKIDLFDEQSS 129 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCC---CCceEEEEecccccccchhH
Confidence 99999866644444455444443221 23899999999999877554
No 172
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=6.5e-21 Score=160.92 Aligned_cols=148 Identities=18% Similarity=0.219 Sum_probs=100.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc--ccccccc--eeeEEEEecCceEEEEECCCchh--------hhhhhHHHhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYF--ESCTSLK--ENVGNFTYEKKNIKIVDLPGEDR--------LRNKFFDQYK 77 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~--~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 77 (211)
..++|+++|.+|||||||+|+|++.... ...|+++ .....+.+++..+.+|||||++. +.. .+..++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~-~~~~~~ 115 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAE-QAEVAM 115 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHH-HHHHHH
Confidence 3479999999999999999999987642 3333332 23444677788999999999752 333 345577
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+.+|++|+|+|+++..+.. ...+...++. .++|+++|+||+|+..... +..+ + ..
T Consensus 116 ~~aD~il~VvD~~~~~s~~---~~~i~~~l~~-----~~~piilV~NK~Dl~~~~~--~~~~-~---~~----------- 170 (472)
T PRK03003 116 RTADAVLFVVDATVGATAT---DEAVARVLRR-----SGKPVILAANKVDDERGEA--DAAA-L---WS----------- 170 (472)
T ss_pred HhCCEEEEEEECCCCCCHH---HHHHHHHHHH-----cCCCEEEEEECccCCccch--hhHH-H---Hh-----------
Confidence 8899999999998854311 1223333332 2389999999999964321 1110 0 00
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++.. ..++|||++|.| +++|+++|.+
T Consensus 171 -----------------------~g~~-~~~~iSA~~g~g---i~eL~~~i~~ 196 (472)
T PRK03003 171 -----------------------LGLG-EPHPVSALHGRG---VGDLLDAVLA 196 (472)
T ss_pred -----------------------cCCC-CeEEEEcCCCCC---cHHHHHHHHh
Confidence 0000 125799999999 9999999875
No 173
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.87 E-value=6.6e-21 Score=167.01 Aligned_cols=159 Identities=18% Similarity=0.194 Sum_probs=110.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-c--ccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-T--SLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..+.+.|+++|+.++|||||+++|....+.... + |.......+.+++..+++||||||..|.. ++...+..+|++|
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~-m~~rga~~aDiaI 365 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTA-MRARGAQVTDIVV 365 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchh-HHHhhhhhCCEEE
Confidence 346789999999999999999999887664322 2 22233344667777999999999999988 6777888899999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|+|+.+.. ..+..+.+..... .++|+++++||+|+.+.. ...+...+.. ... ..
T Consensus 366 LVVdAddGv--~~qT~e~i~~a~~------~~vPiIVviNKiDl~~a~-~e~V~~eL~~-~~~---~~------------ 420 (787)
T PRK05306 366 LVVAADDGV--MPQTIEAINHAKA------AGVPIIVAINKIDKPGAN-PDRVKQELSE-YGL---VP------------ 420 (787)
T ss_pred EEEECCCCC--CHhHHHHHHHHHh------cCCcEEEEEECccccccC-HHHHHHHHHH-hcc---cH------------
Confidence 999998732 2333333333221 238999999999996542 2222222221 100 00
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
++....++++++||++|+| +++|+++|.
T Consensus 421 --------------e~~g~~vp~vpvSAktG~G---I~eLle~I~ 448 (787)
T PRK05306 421 --------------EEWGGDTIFVPVSAKTGEG---IDELLEAIL 448 (787)
T ss_pred --------------HHhCCCceEEEEeCCCCCC---chHHHHhhh
Confidence 0112337899999999999 999999985
No 174
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.87 E-value=1.8e-20 Score=140.83 Aligned_cols=154 Identities=19% Similarity=0.318 Sum_probs=97.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc-cccccee--eEEEEecCceEEEEECCCc----------hhhhhhhHHH
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES-CTSLKEN--VGNFTYEKKNIKIVDLPGE----------DRLRNKFFDQ 75 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~--~~~~~~~~~~~~i~D~~G~----------~~~~~~~~~~ 75 (211)
...++|+++|++|+|||||++++++..+... .++.+.. ...... +..+.+|||||+ +.+.. +...
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~~~~~~-~~~~ 99 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV-NDKLRLVDLPGYGYAKVSKEEKEKWQK-LIEE 99 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec-CCeEEEeCCCCCCCcCCCchHHHHHHH-HHHH
Confidence 4568999999999999999999998764322 2333221 222222 358999999995 23333 3444
Q ss_pred hhhcC---CEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhc
Q psy1914 76 YKSSA---KGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTK 152 (211)
Q Consensus 76 ~~~~~---d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 152 (211)
+++.+ +++++|+|++++..... .++...+.. .++|+++++||+|+..........+.+.+.+..
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~---~~i~~~l~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~----- 166 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELD---LQMIEWLKE-----YGIPVLIVLTKADKLKKGERKKQLKKVRKALKF----- 166 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHH---HHHHHHHHH-----cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh-----
Confidence 55544 67888899876433121 122222221 238999999999997554333222323322220
Q ss_pred ccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 153 SNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++||++|+| +++++++|.+
T Consensus 167 ------------------------------~~~~~~~~Sa~~~~g---i~~l~~~i~~ 191 (196)
T PRK00454 167 ------------------------------GDDEVILFSSLKKQG---IDELRAAIAK 191 (196)
T ss_pred ------------------------------cCCceEEEEcCCCCC---HHHHHHHHHH
Confidence 025778999999999 9999999875
No 175
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.86 E-value=1.4e-20 Score=156.81 Aligned_cols=115 Identities=19% Similarity=0.199 Sum_probs=83.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCc--ccccccccce--eeEEEEecCceEEEEECCCchhhhh-------hhHHHh
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSK--YFESCTSLKE--NVGNFTYEKKNIKIVDLPGEDRLRN-------KFFDQY 76 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~--~~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~ 76 (211)
.+..++|+++|++|||||||+|+|++.. +...+|+++. ....+.+++..+.+|||||+..... .....+
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 3567899999999999999999999865 3445554443 3445778888999999999854332 012346
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
++.+|++++|+|++++.+ .... |+..... .++|+++|+||+|+...
T Consensus 280 ~~~aD~il~V~D~s~~~s-~~~~--~l~~~~~------~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLT-KDDF--LIIDLNK------SKKPFILVLNKIDLKIN 325 (442)
T ss_pred HhhCCEEEEEEECCCCCC-hhHH--HHHHHhh------CCCCEEEEEECccCCCc
Confidence 788999999999988654 3332 4443321 23899999999999643
No 176
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.86 E-value=1.8e-20 Score=163.02 Aligned_cols=159 Identities=19% Similarity=0.276 Sum_probs=107.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc---cccceeeEE--EEec--CceEEEEECCCchhhhhhhHHHhhhcCC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC---TSLKENVGN--FTYE--KKNIKIVDLPGEDRLRNKFFDQYKSSAK 81 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~---~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~d 81 (211)
.+.++|+++|+.++|||||+++|....+.... .|....... +..+ +..+.+||||||+.|.. ++..++..+|
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~-mr~rg~~~aD 320 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSS-MRSRGANVTD 320 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHH-HHHHHHHHCC
Confidence 45679999999999999999999987664322 222222222 3332 35899999999999998 6888889999
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchh
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
++|+|+|+.+... .+..+.+..+.. .++|+++++||+|+.... ...+...+.. ... ..
T Consensus 321 iaILVVDA~dGv~--~QT~E~I~~~k~------~~iPiIVViNKiDl~~~~-~e~v~~eL~~-~~l---l~--------- 378 (742)
T CHL00189 321 IAILIIAADDGVK--PQTIEAINYIQA------ANVPIIVAINKIDKANAN-TERIKQQLAK-YNL---IP--------- 378 (742)
T ss_pred EEEEEEECcCCCC--hhhHHHHHHHHh------cCceEEEEEECCCccccC-HHHHHHHHHH-hcc---ch---------
Confidence 9999999987432 233333333321 238999999999997532 2222222221 000 00
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+..+..++++++||++|+| +++|+++|..
T Consensus 379 -----------------e~~g~~vpvv~VSAktG~G---IdeLle~I~~ 407 (742)
T CHL00189 379 -----------------EKWGGDTPMIPISASQGTN---IDKLLETILL 407 (742)
T ss_pred -----------------HhhCCCceEEEEECCCCCC---HHHHHHhhhh
Confidence 0012237899999999999 9999999864
No 177
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.86 E-value=5.1e-21 Score=139.21 Aligned_cols=138 Identities=20% Similarity=0.212 Sum_probs=89.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchh----hhhhhHHHhhhcCCEEEEEEe
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDR----LRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~~~~~d~ii~v~d 88 (211)
+|+++|.+|+|||||+|++.+... ... ....+.+... .+|||||... +...+. ..++++|++++|+|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~~~-----~~~~v~~~~~--~~iDtpG~~~~~~~~~~~~~-~~~~~ad~il~v~d 73 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-LAR-----KTQAVEFNDK--GDIDTPGEYFSHPRWYHALI-TTLQDVDMLIYVHG 73 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-cCc-----cceEEEECCC--CcccCCccccCCHHHHHHHH-HHHhcCCEEEEEEe
Confidence 799999999999999999876432 111 1222333333 3799999832 222122 23678999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
+++..+.. ..++..+. .++|+++++||+|+.+. ......+. +..
T Consensus 74 ~~~~~s~~---~~~~~~~~-------~~~~ii~v~nK~Dl~~~-~~~~~~~~----~~~--------------------- 117 (158)
T PRK15467 74 ANDPESRL---PAGLLDIG-------VSKRQIAVISKTDMPDA-DVAATRKL----LLE--------------------- 117 (158)
T ss_pred CCCccccc---CHHHHhcc-------CCCCeEEEEEccccCcc-cHHHHHHH----HHH---------------------
Confidence 98765421 12222221 13799999999999642 22221211 110
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+....+++++||++|+| +++++++|.+
T Consensus 118 ------------~~~~~p~~~~Sa~~g~g---i~~l~~~l~~ 144 (158)
T PRK15467 118 ------------TGFEEPIFELNSHDPQS---VQQLVDYLAS 144 (158)
T ss_pred ------------cCCCCCEEEEECCCccC---HHHHHHHHHH
Confidence 01114789999999999 9999999876
No 178
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=2e-20 Score=153.45 Aligned_cols=157 Identities=16% Similarity=0.173 Sum_probs=103.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecCc-eEEEEECCCchh-------hhhhhHHHhhhcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEKK-NIKIVDLPGEDR-------LRNKFFDQYKSSA 80 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~~-~~~i~D~~G~~~-------~~~~~~~~~~~~~ 80 (211)
..|+++|.+|||||||+|+|++.+. ...+ +|..+..+.+.+.+. .+.++||||... ....+. ..+..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l-~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFL-KHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHH-HHHHhC
Confidence 3799999999999999999998664 3334 355567777888764 699999999743 222233 346779
Q ss_pred CEEEEEEeCCCc--hhhHHHHHHHHHHHHcC-cCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 81 KGIVYVLDSSTV--QKTLRDVAESLYVILAD-PQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 81 d~ii~v~d~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+++++|+|++.. ...+.....++..+... ..+.. .|+++|+||+|+.......+....+.+.+
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~--kP~IlVlNKiDl~~~~el~~~l~~l~~~~------------ 304 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAE--KPRWLVFNKIDLLDEEEAEERAKAIVEAL------------ 304 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcC--CCEEEEEeCCccCChHHHHHHHHHHHHHh------------
Confidence 999999998721 12234444443333321 11223 89999999999975432221111111100
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....++.+||++++| +++|+++|.+
T Consensus 305 ------------------------~~~~~Vi~ISA~tg~G---IdeLl~~I~~ 330 (390)
T PRK12298 305 ------------------------GWEGPVYLISAASGLG---VKELCWDLMT 330 (390)
T ss_pred ------------------------CCCCCEEEEECCCCcC---HHHHHHHHHH
Confidence 1113568899999999 9999999865
No 179
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.86 E-value=1.2e-20 Score=162.10 Aligned_cols=156 Identities=15% Similarity=0.204 Sum_probs=106.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc---ccccc---cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK---YFESC---TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~---~~~~~---~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+.|+++|++++|||||+++|++.. +.... .|+......+.+++..+.+||+||++.|..+ +..++.++|++++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~-~~~g~~~aD~aIL 79 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISN-AIAGGGGIDAALL 79 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHH-HHhhhccCCEEEE
Confidence 468999999999999999999633 22221 2334444557777789999999999999884 5666788999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|+++.. ..+..+.+.. +.. . ++| +++|+||+|+.+........+.+.+.+....
T Consensus 80 VVDa~~G~--~~qT~ehl~i-l~~---l--gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~--------------- 136 (581)
T TIGR00475 80 VVDADEGV--MTQTGEHLAV-LDL---L--GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYI--------------- 136 (581)
T ss_pred EEECCCCC--cHHHHHHHHH-HHH---c--CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC---------------
Confidence 99998732 2333333322 221 1 277 9999999999754332222333332222100
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++++||++|+| +++++++|.+
T Consensus 137 ----------------~~~~~~ii~vSA~tG~G---I~eL~~~L~~ 163 (581)
T TIGR00475 137 ----------------FLKNAKIFKTSAKTGQG---IGELKKELKN 163 (581)
T ss_pred ----------------CCCCCcEEEEeCCCCCC---chhHHHHHHH
Confidence 01136889999999999 9999998864
No 180
>PTZ00099 rab6; Provisional
Probab=99.86 E-value=1.6e-20 Score=138.82 Aligned_cols=130 Identities=14% Similarity=0.209 Sum_probs=96.4
Q ss_pred cccccc-cccceeeEE--EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcC
Q psy1914 35 KYFESC-TSLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILAD 109 (211)
Q Consensus 35 ~~~~~~-~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~ 109 (211)
.|.+.+ ||++..+.. +.+++. .+.+|||||++.+.. ++..+++++|++|+|||++++.+ ++.+..|+..++..
T Consensus 4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~-~~~~~~~~ad~~ilv~D~t~~~s-f~~~~~w~~~i~~~ 81 (176)
T PTZ00099 4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRS-LIPSYIRDSAAAIVVYDITNRQS-FENTTKWIQDILNE 81 (176)
T ss_pred CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhh-ccHHHhCCCcEEEEEEECCCHHH-HHHHHHHHHHHHHh
Confidence 455554 777766543 556554 889999999999998 78899999999999999999665 88888888887754
Q ss_pred cCcCCCCCcEEEEEeCCCccCCCCHHHH-HHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEE
Q psy1914 110 PQVQSSRVNILVCCNKQDQTLAKSSSVV-KTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFC 188 (211)
Q Consensus 110 ~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (211)
.. .++|+++|+||+||...+..... ...+.. .....++
T Consensus 82 ~~---~~~piilVgNK~DL~~~~~v~~~e~~~~~~--------------------------------------~~~~~~~ 120 (176)
T PTZ00099 82 RG---KDVIIALVGNKTDLGDLRKVTYEEGMQKAQ--------------------------------------EYNTMFH 120 (176)
T ss_pred cC---CCCeEEEEEECcccccccCCCHHHHHHHHH--------------------------------------HcCCEEE
Confidence 31 34899999999999754332211 111111 1125789
Q ss_pred EEeeecCCCccchHHHHHHHhh
Q psy1914 189 DTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 189 ~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+|||++|+| ++++++||.+
T Consensus 121 e~SAk~g~n---V~~lf~~l~~ 139 (176)
T PTZ00099 121 ETSAKAGHN---IKVLFKKIAA 139 (176)
T ss_pred EEECCCCCC---HHHHHHHHHH
Confidence 999999999 9999999975
No 181
>PRK00089 era GTPase Era; Reviewed
Probab=99.86 E-value=1.3e-20 Score=150.20 Aligned_cols=154 Identities=20% Similarity=0.235 Sum_probs=99.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc--c-ccceeeEE-EEecCceEEEEECCCchhhhhh-------hHHHhhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC--T-SLKENVGN-FTYEKKNIKIVDLPGEDRLRNK-------FFDQYKS 78 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~-t~~~~~~~-~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~ 78 (211)
+...|+++|++|||||||+|+|++.+..... | |+...... ...++..+.+|||||....... .....+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 3456999999999999999999988763322 2 33233333 3334458999999997443210 2233567
Q ss_pred cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccccc
Q psy1914 79 SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLED 158 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 158 (211)
++|++++|+|+++.. .....++...+.. .+.|+++|+||+|+.... ......+. .+..
T Consensus 84 ~~D~il~vvd~~~~~---~~~~~~i~~~l~~-----~~~pvilVlNKiDl~~~~--~~l~~~~~-~l~~----------- 141 (292)
T PRK00089 84 DVDLVLFVVDADEKI---GPGDEFILEKLKK-----VKTPVILVLNKIDLVKDK--EELLPLLE-ELSE----------- 141 (292)
T ss_pred cCCEEEEEEeCCCCC---ChhHHHHHHHHhh-----cCCCEEEEEECCcCCCCH--HHHHHHHH-HHHh-----------
Confidence 899999999998722 2233344444332 238999999999997321 11122221 1110
Q ss_pred chhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 159 TNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
......++++||++|+| +++++++|.+
T Consensus 142 ----------------------~~~~~~i~~iSA~~~~g---v~~L~~~L~~ 168 (292)
T PRK00089 142 ----------------------LMDFAEIVPISALKGDN---VDELLDVIAK 168 (292)
T ss_pred ----------------------hCCCCeEEEecCCCCCC---HHHHHHHHHH
Confidence 00125779999999999 9999999875
No 182
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.86 E-value=1.5e-20 Score=136.83 Aligned_cols=153 Identities=22% Similarity=0.259 Sum_probs=96.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc---ccccee-eEEEEecCceEEEEECCCchhhhh-------hhHHHhhhc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC---TSLKEN-VGNFTYEKKNIKIVDLPGEDRLRN-------KFFDQYKSS 79 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~---~t~~~~-~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~ 79 (211)
..+|+++|++|+|||||++++.+....... .+.... ...+...+..+.+|||||...... ......+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999987653222 122111 222333445899999999753221 023345677
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
+|++++|+|++++.. ....++...+.. .+.|+++|+||+|+..... ...+.+. .+..
T Consensus 83 ~d~i~~v~d~~~~~~---~~~~~~~~~~~~-----~~~~~iiv~nK~Dl~~~~~--~~~~~~~-~~~~------------ 139 (168)
T cd04163 83 VDLVLFVVDASEPIG---EGDEFILELLKK-----SKTPVILVLNKIDLVKDKE--DLLPLLE-KLKE------------ 139 (168)
T ss_pred CCEEEEEEECCCccC---chHHHHHHHHHH-----hCCCEEEEEEchhccccHH--HHHHHHH-HHHh------------
Confidence 999999999988522 122222333221 1289999999999974221 1121111 1110
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....+++++|+++++| +++++++|.+
T Consensus 140 ---------------------~~~~~~~~~~s~~~~~~---~~~l~~~l~~ 166 (168)
T cd04163 140 ---------------------LGPFAEIFPISALKGEN---VDELLEEIVK 166 (168)
T ss_pred ---------------------ccCCCceEEEEeccCCC---hHHHHHHHHh
Confidence 01125779999999999 9999999976
No 183
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.86 E-value=3.9e-20 Score=141.57 Aligned_cols=179 Identities=16% Similarity=0.106 Sum_probs=106.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc-----------------c-------ccceee-----------------EEEE
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC-----------------T-------SLKENV-----------------GNFT 51 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~-----------------~-------t~~~~~-----------------~~~~ 51 (211)
||+++|+.++|||||+++|..+.+.... . ..++.. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999975542210 0 011110 2233
Q ss_pred ecCceEEEEECCCchhhhhhhHHHhh-hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 52 YEKKNIKIVDLPGEDRLRNKFFDQYK-SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 52 ~~~~~~~i~D~~G~~~~~~~~~~~~~-~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
..+..++++||||++.|......... ..+|++++|+|+..... ....+.+..+.. .++|+++|+||+|+.+
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~--~~d~~~l~~l~~------~~ip~ivvvNK~D~~~ 152 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII--GMTKEHLGLALA------LNIPVFVVVTKIDLAP 152 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc--HHHHHHHHHHHH------cCCCEEEEEECccccC
Confidence 44568999999999998774333322 25899999999976432 223333333222 2289999999999975
Q ss_pred CCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 131 AKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
........+.+.+.+................+.. .. . .-....+.++++.+||+||+| +++|+++|..
T Consensus 153 ~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~-~~---~-----~~~~~~~~~pi~~vSavtg~G---i~~L~~~L~~ 220 (224)
T cd04165 153 ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVV-LA---A-----SNFSSERIVPIFQVSNVTGEG---LDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHHHhcCCCccccceeeeccccee-eh---h-----hcCCccccCcEEEeeCCCccC---HHHHHHHHHh
Confidence 4444444444444443211111111000000000 00 0 000123447899999999999 9999999976
Q ss_pred C
Q psy1914 211 L 211 (211)
Q Consensus 211 l 211 (211)
|
T Consensus 221 l 221 (224)
T cd04165 221 L 221 (224)
T ss_pred c
Confidence 4
No 184
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.86 E-value=5e-20 Score=157.70 Aligned_cols=112 Identities=18% Similarity=0.195 Sum_probs=76.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-----cccceeeEEEEe----------------cCceEEEEECCCchhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-----TSLKENVGNFTY----------------EKKNIKIVDLPGEDRL 68 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-----~t~~~~~~~~~~----------------~~~~~~i~D~~G~~~~ 68 (211)
+.+-|+++|++++|||||+++|.+..+.... .+++........ +...+.+||||||+.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 3567999999999999999999987764332 122222111111 1114889999999999
Q ss_pred hhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 69 RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
.. ++..+++.+|++++|+|+++... .+..+.+..+. . .++|+++++||+|+..
T Consensus 83 ~~-l~~~~~~~aD~~IlVvD~~~g~~--~qt~e~i~~l~-~-----~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 TN-LRKRGGALADLAILIVDINEGFK--PQTQEALNILR-M-----YKTPFVVAANKIDRIP 135 (590)
T ss_pred HH-HHHHHHhhCCEEEEEEECCcCCC--HhHHHHHHHHH-H-----cCCCEEEEEECCCccc
Confidence 88 67888899999999999987321 12222222221 1 2389999999999964
No 185
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.85 E-value=2.6e-20 Score=163.85 Aligned_cols=150 Identities=21% Similarity=0.276 Sum_probs=106.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecCceEEEEECCCchhhhh---------hhHHHhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEKKNIKIVDLPGEDRLRN---------KFFDQYK 77 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~~ 77 (211)
+.++|+++|++|||||||+|+|++.+. ...+| |.....+.+.+++..+.+|||||+.++.. .....++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 457899999999999999999998654 33444 33344555677777999999999976532 1122232
Q ss_pred --hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccc
Q psy1914 78 --SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 78 --~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (211)
..+|++++|+|+++.++.. .++..+.+ .++|+++++||+|+.+.+......+.+.+.++
T Consensus 82 ~~~~aD~vI~VvDat~ler~l----~l~~ql~e------~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG--------- 142 (772)
T PRK09554 82 LSGDADLLINVVDASNLERNL----YLTLQLLE------LGIPCIVALNMLDIAEKQNIRIDIDALSARLG--------- 142 (772)
T ss_pred hccCCCEEEEEecCCcchhhH----HHHHHHHH------cCCCEEEEEEchhhhhccCcHHHHHHHHHHhC---------
Confidence 3699999999998855422 23333322 23899999999999765554444444544333
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|+| ++++++.+.+
T Consensus 143 -----------------------------~pVvpiSA~~g~G---IdeL~~~I~~ 165 (772)
T PRK09554 143 -----------------------------CPVIPLVSTRGRG---IEALKLAIDR 165 (772)
T ss_pred -----------------------------CCEEEEEeecCCC---HHHHHHHHHH
Confidence 6789999999999 9999998864
No 186
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=3.4e-20 Score=155.50 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=101.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc--ccccccccee--eEEEEecCceEEEEECCCchhh----------hhhhHHH
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSLKEN--VGNFTYEKKNIKIVDLPGEDRL----------RNKFFDQ 75 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~~~~--~~~~~~~~~~~~i~D~~G~~~~----------~~~~~~~ 75 (211)
..++|+++|.+|+|||||+|+|++... ....+.+... ...+..++..+.+|||||+.+. .......
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 568999999999999999999997653 2333333222 2335667779999999996321 1111223
Q ss_pred hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccc
Q psy1914 76 YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (211)
+++.+|++++|+|++++.. .+....+..+.. .++|+++|+||+|+.......+..+.+...+..
T Consensus 252 ~~~~ad~~ilViD~~~~~~--~~~~~i~~~~~~------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~-------- 315 (435)
T PRK00093 252 AIERADVVLLVIDATEGIT--EQDLRIAGLALE------AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPF-------- 315 (435)
T ss_pred HHHHCCEEEEEEeCCCCCC--HHHHHHHHHHHH------cCCcEEEEEECccCCCHHHHHHHHHHHHHhccc--------
Confidence 5678999999999988543 222222233222 238999999999997332222222222211110
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++++||++|.| ++++++++.+
T Consensus 316 --------------------------~~~~~i~~~SA~~~~g---v~~l~~~i~~ 341 (435)
T PRK00093 316 --------------------------LDYAPIVFISALTGQG---VDKLLEAIDE 341 (435)
T ss_pred --------------------------ccCCCEEEEeCCCCCC---HHHHHHHHHH
Confidence 1126789999999999 9999988764
No 187
>COG1159 Era GTPase [General function prediction only]
Probab=99.85 E-value=2.6e-20 Score=143.71 Aligned_cols=153 Identities=19% Similarity=0.228 Sum_probs=104.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc--cccc-ccceeeEE-EEecCceEEEEECCCchhhhhh-------hHHHhhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYF--ESCT-SLKENVGN-FTYEKKNIKIVDLPGEDRLRNK-------FFDQYKS 78 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~--~~~~-t~~~~~~~-~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~ 78 (211)
+..-|+++|.||||||||+|++++.+.. +..| |+.-.+.. ++.++..+.++||||...-+.. .....+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 3457899999999999999999998863 3333 33334444 5666679999999998543221 1223467
Q ss_pred cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccc
Q psy1914 79 SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
++|+++||+|+.+... .-.+++...++. .+.|+++++||+|+...... ....+.+...+.
T Consensus 85 dvDlilfvvd~~~~~~---~~d~~il~~lk~-----~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~----------- 145 (298)
T COG1159 85 DVDLILFVVDADEGWG---PGDEFILEQLKK-----TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLP----------- 145 (298)
T ss_pred cCcEEEEEEeccccCC---ccHHHHHHHHhh-----cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCC-----------
Confidence 7999999999987332 233444444432 22899999999999876552 222222221111
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++||++|.| ++.|.+.|.+
T Consensus 146 --------------------------f~~ivpiSA~~g~n---~~~L~~~i~~ 169 (298)
T COG1159 146 --------------------------FKEIVPISALKGDN---VDTLLEIIKE 169 (298)
T ss_pred --------------------------cceEEEeeccccCC---HHHHHHHHHH
Confidence 14779999999999 9999988864
No 188
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.85 E-value=1.4e-20 Score=161.99 Aligned_cols=142 Identities=22% Similarity=0.325 Sum_probs=100.6
Q ss_pred cCCCCCHHHHHHHHHcCcc-cccccccce--eeEEEEecCceEEEEECCCchhhhhh-----hHHHhh--hcCCEEEEEE
Q psy1914 18 GLSLSGKTLLFARLVYSKY-FESCTSLKE--NVGNFTYEKKNIKIVDLPGEDRLRNK-----FFDQYK--SSAKGIVYVL 87 (211)
Q Consensus 18 G~~~~GKSsli~~l~~~~~-~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~~~~~~~-----~~~~~~--~~~d~ii~v~ 87 (211)
|++|||||||+|++++... ...+|+++. ....+++++..+.+|||||++++... ....++ +.+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 8999999999999998775 444554443 44557778889999999999776431 233343 3689999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|+++.++. ..+...+.. .++|+++|+||+|+.+........+.+.+.++
T Consensus 81 Dat~ler~----l~l~~ql~~------~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg--------------------- 129 (591)
T TIGR00437 81 DASNLERN----LYLTLQLLE------LGIPMILALNLVDEAEKKGIRIDEEKLEERLG--------------------- 129 (591)
T ss_pred cCCcchhh----HHHHHHHHh------cCCCEEEEEehhHHHHhCCChhhHHHHHHHcC---------------------
Confidence 99875432 222233322 23899999999999755544333334443332
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|+| +++++++|.+
T Consensus 130 -----------------~pvv~tSA~tg~G---i~eL~~~i~~ 152 (591)
T TIGR00437 130 -----------------VPVVPTSATEGRG---IERLKDAIRK 152 (591)
T ss_pred -----------------CCEEEEECCCCCC---HHHHHHHHHH
Confidence 6789999999999 9999999864
No 189
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.85 E-value=8.7e-20 Score=131.01 Aligned_cols=155 Identities=19% Similarity=0.298 Sum_probs=120.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccc----------cc---cccceeeEEEEecC-ceEEEEECCCchhhhhhh
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFE----------SC---TSLKENVGNFTYEK-KNIKIVDLPGEDRLRNKF 72 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~----------~~---~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~ 72 (211)
......||+++|+.++||||++.+++...... .. .|+...++.+++.+ ..+.++|||||++|.. +
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~f-m 84 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKF-M 84 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHH-H
Confidence 34567899999999999999999999766311 11 34556777778777 5999999999999999 8
Q ss_pred HHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhc
Q psy1914 73 FDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTK 152 (211)
Q Consensus 73 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 152 (211)
|.-+.+++.++|+++|.+.+.. + .. ..+..++... .. +|+++++||.||.++..++++.+.+...+.
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~-~-~a-~~ii~f~~~~--~~--ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~------ 151 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPIT-F-HA-EEIIDFLTSR--NP--IPVVVAINKQDLFDALPPEKIREALKLELL------ 151 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcc-h-HH-HHHHHHHhhc--cC--CCEEEEeeccccCCCCCHHHHHHHHHhccC------
Confidence 9999999999999999999765 3 23 3334443321 11 899999999999999999998888774321
Q ss_pred ccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 153 SNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
++++++.+|..++| ..+.++-+.
T Consensus 152 -------------------------------~~~vi~~~a~e~~~---~~~~L~~ll 174 (187)
T COG2229 152 -------------------------------SVPVIEIDATEGEG---ARDQLDVLL 174 (187)
T ss_pred -------------------------------CCceeeeecccchh---HHHHHHHHH
Confidence 17889999999999 777665543
No 190
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=5.7e-20 Score=154.15 Aligned_cols=146 Identities=18% Similarity=0.197 Sum_probs=99.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc--cccccc--cceeeEEEEecCceEEEEECCCchh--------hhhhhHHHhhhc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY--FESCTS--LKENVGNFTYEKKNIKIVDLPGEDR--------LRNKFFDQYKSS 79 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t--~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~ 79 (211)
++|+++|.+|||||||+|+|.+... ....|. .......+.+++..+.+|||||+.. +.. ....++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~-~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIRE-QAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHH-HHHHHHHh
Confidence 5899999999999999999998764 334443 3345566788888999999999976 222 23446778
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
+|++++|+|++++....+ .++...+.. .++|+++|+||+|+.... ....+ +. .+
T Consensus 81 ad~il~vvd~~~~~~~~~---~~~~~~l~~-----~~~piilv~NK~D~~~~~--~~~~~-~~-~l-------------- 134 (435)
T PRK00093 81 ADVILFVVDGRAGLTPAD---EEIAKILRK-----SNKPVILVVNKVDGPDEE--ADAYE-FY-SL-------------- 134 (435)
T ss_pred CCEEEEEEECCCCCCHHH---HHHHHHHHH-----cCCcEEEEEECccCccch--hhHHH-HH-hc--------------
Confidence 999999999987433222 122222222 138999999999975421 11111 10 00
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+. -.++++||++|.| +++++++|.+
T Consensus 135 ----------------------g~-~~~~~iSa~~g~g---v~~l~~~I~~ 159 (435)
T PRK00093 135 ----------------------GL-GEPYPISAEHGRG---IGDLLDAILE 159 (435)
T ss_pred ----------------------CC-CCCEEEEeeCCCC---HHHHHHHHHh
Confidence 00 1357899999999 9999999864
No 191
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.85 E-value=1.1e-19 Score=156.36 Aligned_cols=151 Identities=17% Similarity=0.234 Sum_probs=100.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc-------ccccc-c------ccce--e--eEEEEe---cC--ceEEEEECCCchhh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK-------YFESC-T------SLKE--N--VGNFTY---EK--KNIKIVDLPGEDRL 68 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~-------~~~~~-~------t~~~--~--~~~~~~---~~--~~~~i~D~~G~~~~ 68 (211)
.+++++|+.++|||||+++|+... +...+ . +.+. . ...+.+ ++ ..+++|||||+..|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 479999999999999999998642 11111 1 1122 2 222334 23 37899999999999
Q ss_pred hhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHH
Q psy1914 69 RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLV 148 (211)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 148 (211)
.. .+..+++.+|++|+|+|+++..+ .+.... |..... .++|+++|+||+|+.+.. .....+.+.+.++.
T Consensus 84 ~~-~v~~~l~~aD~aILVvDat~g~~-~qt~~~-~~~~~~------~~ipiIiViNKiDl~~~~-~~~~~~el~~~lg~- 152 (595)
T TIGR01393 84 SY-EVSRSLAACEGALLLVDAAQGIE-AQTLAN-VYLALE------NDLEIIPVINKIDLPSAD-PERVKKEIEEVIGL- 152 (595)
T ss_pred HH-HHHHHHHhCCEEEEEecCCCCCC-HhHHHH-HHHHHH------cCCCEEEEEECcCCCccC-HHHHHHHHHHHhCC-
Confidence 88 57888999999999999988543 222222 233322 238999999999997533 22222233222110
Q ss_pred hhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 149 RRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++||++|.| +++++++|.+
T Consensus 153 ----------------------------------~~~~vi~vSAktG~G---I~~Lle~I~~ 177 (595)
T TIGR01393 153 ----------------------------------DASEAILASAKTGIG---IEEILEAIVK 177 (595)
T ss_pred ----------------------------------CcceEEEeeccCCCC---HHHHHHHHHH
Confidence 002478899999999 9999999864
No 192
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.85 E-value=5.9e-20 Score=161.79 Aligned_cols=156 Identities=13% Similarity=0.103 Sum_probs=102.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc--cccccccc--eeeEEEEecCceEEEEECCCchh----------hhhhhHHH
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSLK--ENVGNFTYEKKNIKIVDLPGEDR----------LRNKFFDQ 75 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~ 75 (211)
..++|+++|.+|||||||+|+|++.+. ....++++ .....+.+++..+.+|||||..+ +.......
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 348999999999999999999998874 34444333 33345678888999999999632 22111123
Q ss_pred hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccc
Q psy1914 76 YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (211)
+++.+|++++|+|+++..+ .+. ...+..+.. .++|+++|+||+|+.+...... +++.+...
T Consensus 529 ~i~~advvilViDat~~~s-~~~-~~i~~~~~~------~~~piIiV~NK~DL~~~~~~~~----~~~~~~~~------- 589 (712)
T PRK09518 529 AIERSELALFLFDASQPIS-EQD-LKVMSMAVD------AGRALVLVFNKWDLMDEFRRQR----LERLWKTE------- 589 (712)
T ss_pred HhhcCCEEEEEEECCCCCC-HHH-HHHHHHHHH------cCCCEEEEEEchhcCChhHHHH----HHHHHHHh-------
Confidence 4678999999999988544 222 233333322 2389999999999975332222 22222210
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+..+ ...+++.+||++|.| ++++++.+.+
T Consensus 590 ----------------------l~~~-~~~~ii~iSAktg~g---v~~L~~~i~~ 618 (712)
T PRK09518 590 ----------------------FDRV-TWARRVNLSAKTGWH---TNRLAPAMQE 618 (712)
T ss_pred ----------------------ccCC-CCCCEEEEECCCCCC---HHHHHHHHHH
Confidence 0000 114568899999999 9999998764
No 193
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=1.1e-19 Score=152.30 Aligned_cols=145 Identities=18% Similarity=0.214 Sum_probs=99.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcc--cccccc--cceeeEEEEecCceEEEEECCCc--------hhhhhhhHHHhhhcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKY--FESCTS--LKENVGNFTYEKKNIKIVDLPGE--------DRLRNKFFDQYKSSA 80 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t--~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~~~ 80 (211)
+|+++|.+|||||||+|+|++... ....|. .......+.+++..+.+|||||. ..+.. ....+++.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~-~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIRE-QAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHH-HHHHHHhhC
Confidence 589999999999999999998763 334443 33455667788889999999996 33344 355567889
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccch
Q psy1914 81 KGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
|++++|+|+.+...... ..+...++. .++|+++|+||+|+....... ..+. .+.
T Consensus 80 d~vl~vvD~~~~~~~~d---~~i~~~l~~-----~~~piilVvNK~D~~~~~~~~---~~~~-~lg-------------- 133 (429)
T TIGR03594 80 DVILFVVDGREGLTPED---EEIAKWLRK-----SGKPVILVANKIDGKKEDAVA---AEFY-SLG-------------- 133 (429)
T ss_pred CEEEEEEeCCCCCCHHH---HHHHHHHHH-----hCCCEEEEEECccCCcccccH---HHHH-hcC--------------
Confidence 99999999987433121 222333322 238999999999987543211 1111 010
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-..++++||++|.| ++++++++.+
T Consensus 134 -----------------------~~~~~~vSa~~g~g---v~~ll~~i~~ 157 (429)
T TIGR03594 134 -----------------------FGEPIPISAEHGRG---IGDLLDAILE 157 (429)
T ss_pred -----------------------CCCeEEEeCCcCCC---hHHHHHHHHH
Confidence 02568899999999 9999998864
No 194
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.83 E-value=1.2e-19 Score=127.50 Aligned_cols=137 Identities=19% Similarity=0.178 Sum_probs=88.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCch----hhhhhhHHHhhhcCCEEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGED----RLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~~d~ii~v~ 87 (211)
-||+++|+.|||||||+++|.+....... ...+.+.+ .++||||.. .+.+.+ ...-.+||.++++.
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~K------Tq~i~~~~---~~IDTPGEyiE~~~~y~aL-i~ta~dad~V~ll~ 71 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKK------TQAIEYYD---NTIDTPGEYIENPRFYHAL-IVTAQDADVVLLLQ 71 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCc------cceeEecc---cEEECChhheeCHHHHHHH-HHHHhhCCEEEEEe
Confidence 37999999999999999999986542221 12233333 359999973 233322 22345699999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC-CCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA-KSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
|++++.+.+..-. ... - +.|+|-|+||+|+... .+.+... +.+...
T Consensus 72 dat~~~~~~pP~f---a~~------f--~~pvIGVITK~Dl~~~~~~i~~a~----~~L~~a------------------ 118 (143)
T PF10662_consen 72 DATEPRSVFPPGF---ASM------F--NKPVIGVITKIDLPSDDANIERAK----KWLKNA------------------ 118 (143)
T ss_pred cCCCCCccCCchh---hcc------c--CCCEEEEEECccCccchhhHHHHH----HHHHHc------------------
Confidence 9998654331111 111 1 2799999999999832 2222222 223210
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+. -.+|.+|+++|+| +++|.++|.+
T Consensus 119 ---------------G~-~~if~vS~~~~eG---i~eL~~~L~~ 143 (143)
T PF10662_consen 119 ---------------GV-KEIFEVSAVTGEG---IEELKDYLEE 143 (143)
T ss_pred ---------------CC-CCeEEEECCCCcC---HHHHHHHHhC
Confidence 11 2348899999999 9999999975
No 195
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.83 E-value=7.6e-20 Score=154.57 Aligned_cols=150 Identities=23% Similarity=0.338 Sum_probs=117.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecCceEEEEECCCchhh-----hhhhHHHhh--hc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEKKNIKIVDLPGEDRL-----RNKFFDQYK--SS 79 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~--~~ 79 (211)
+..+|+++|+||||||||+|+|++.+. ..++| |.....+.+.+++..++++|+||..++ .++..+.|+ .+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 456799999999999999999998765 77887 455566778899999999999998543 222333443 35
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
+|+++.|+|+++.++++.-+ .+++. .++|++++.|++|........-..+.+++.+.
T Consensus 82 ~D~ivnVvDAtnLeRnLylt----lQLlE------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG------------- 138 (653)
T COG0370 82 PDLIVNVVDATNLERNLYLT----LQLLE------LGIPMILALNMIDEAKKRGIRIDIEKLSKLLG------------- 138 (653)
T ss_pred CCEEEEEcccchHHHHHHHH----HHHHH------cCCCeEEEeccHhhHHhcCCcccHHHHHHHhC-------------
Confidence 79999999998866544222 23332 33899999999999888777777778888777
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|+| ++++++.+.+
T Consensus 139 -------------------------vPVv~tvA~~g~G---~~~l~~~i~~ 161 (653)
T COG0370 139 -------------------------VPVVPTVAKRGEG---LEELKRAIIE 161 (653)
T ss_pred -------------------------CCEEEEEeecCCC---HHHHHHHHHH
Confidence 8999999999999 9999988764
No 196
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.83 E-value=2.4e-19 Score=136.18 Aligned_cols=111 Identities=23% Similarity=0.313 Sum_probs=74.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc--ccc--------------------------------cccccceeeEEEEecCceEE
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSK--YFE--------------------------------SCTSLKENVGNFTYEKKNIK 58 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~--~~~--------------------------------~~~t~~~~~~~~~~~~~~~~ 58 (211)
||+++|.+|+|||||+++|+... ... ...|.......+.+++..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 68999999999999999997532 110 00123333444566777999
Q ss_pred EEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 59 IVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 59 i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
+|||||+..|... ....+..+|++++|+|+++... .+....+. ++.. ... .++++|+||+|+.+.
T Consensus 81 liDTpG~~~~~~~-~~~~~~~ad~~llVvD~~~~~~--~~~~~~~~-~~~~--~~~--~~iIvviNK~D~~~~ 145 (208)
T cd04166 81 IADTPGHEQYTRN-MVTGASTADLAILLVDARKGVL--EQTRRHSY-ILSL--LGI--RHVVVAVNKMDLVDY 145 (208)
T ss_pred EEECCcHHHHHHH-HHHhhhhCCEEEEEEECCCCcc--HhHHHHHH-HHHH--cCC--CcEEEEEEchhcccC
Confidence 9999999988764 4556788999999999987432 22222222 2211 111 457889999999753
No 197
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.83 E-value=1.6e-19 Score=150.81 Aligned_cols=117 Identities=21% Similarity=0.272 Sum_probs=78.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCc--cc--------------------------------ccccccceeeEEEEec
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSK--YF--------------------------------ESCTSLKENVGNFTYE 53 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~ 53 (211)
.+++++|+++|++++|||||+++|+... .. ....|.......++.+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 5678999999999999999999998321 10 0112344444556667
Q ss_pred CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
+..+.+|||||++.|... ....+..+|++++|+|+++......+..+.+... .. ... .|+++++||+|+.+
T Consensus 83 ~~~i~liDtpG~~~~~~~-~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~-~~--~~~--~~iivviNK~Dl~~ 153 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKN-MITGASQADAAVLVVAADDAGGVMPQTREHVFLA-RT--LGI--NQLIVAINKMDAVN 153 (425)
T ss_pred CeEEEEEECCCcccchhh-HhhchhcCCEEEEEEEcccCCCCCcchHHHHHHH-HH--cCC--CeEEEEEEcccccc
Confidence 779999999999888764 3344677999999999987211112222222222 11 111 46999999999975
No 198
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.83 E-value=7.7e-20 Score=126.67 Aligned_cols=109 Identities=20% Similarity=0.281 Sum_probs=75.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc-c--cccccc--eeeEEEEecC--ceEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYF-E--SCTSLK--ENVGNFTYEK--KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~-~--~~~t~~--~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
||+++|++|||||||+++|++..+. . ..++.+ .......... ..+.+||++|++.+.. .+..++..+|++++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-~~~~~~~~~d~~il 79 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYS-QHQFFLKKADAVIL 79 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHC-TSHHHHHHSCEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecc-cccchhhcCcEEEE
Confidence 7999999999999999999988876 1 112222 2222233332 3689999999988877 45556888999999
Q ss_pred EEeCCCchhhHHHHHHH---HHHHHcCcCcCCCCCcEEEEEeCCC
Q psy1914 86 VLDSSTVQKTLRDVAES---LYVILADPQVQSSRVNILVCCNKQD 127 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~iiv~nK~D 127 (211)
|||++++.+ +..+.++ +..+.. ...++|+++|+||.|
T Consensus 80 v~D~s~~~s-~~~~~~~~~~l~~~~~----~~~~~piilv~nK~D 119 (119)
T PF08477_consen 80 VYDLSDPES-LEYLSQLLKWLKNIRK----RDKNIPIILVGNKSD 119 (119)
T ss_dssp EEECCGHHH-HHHHHHHHHHHHHHHH----HSSCSEEEEEEE-TC
T ss_pred EEcCCChHH-HHHHHHHHHHHHHHHc----cCCCCCEEEEEeccC
Confidence 999999664 6666444 444432 123499999999998
No 199
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.83 E-value=9.6e-19 Score=131.21 Aligned_cols=112 Identities=19% Similarity=0.144 Sum_probs=75.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc--------cc-----------ccccccceeeEEEEecCceEEEEECCCchhhhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK--------YF-----------ESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRN 70 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~--------~~-----------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 70 (211)
++++|+++|..++|||||+++|+... .. ....|.......++.++..+.++||||+..|..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 35799999999999999999998531 00 001122222333455566899999999998877
Q ss_pred hhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCccC
Q psy1914 71 KFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQDQTL 130 (211)
Q Consensus 71 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 130 (211)
. ....+..+|++++|+|+..... .+..+.+..+.. .++| +++++||+|+..
T Consensus 81 ~-~~~~~~~~D~~ilVvda~~g~~--~~~~~~~~~~~~------~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 81 N-MITGAAQMDGAILVVSATDGPM--PQTREHLLLARQ------VGVPYIVVFLNKADMVD 132 (195)
T ss_pred H-HHHHhhhCCEEEEEEECCCCCc--HHHHHHHHHHHH------cCCCcEEEEEeCCCCCC
Confidence 4 4556677999999999976322 333334443322 1266 789999999963
No 200
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.83 E-value=4.1e-19 Score=128.08 Aligned_cols=150 Identities=15% Similarity=0.166 Sum_probs=97.7
Q ss_pred EEcCCCCCHHHHHHHHHcCccccc--cc--ccceeeEEEEec-CceEEEEECCCchhhhh------hhHHHhhhcCCEEE
Q psy1914 16 LSGLSLSGKTLLFARLVYSKYFES--CT--SLKENVGNFTYE-KKNIKIVDLPGEDRLRN------KFFDQYKSSAKGIV 84 (211)
Q Consensus 16 i~G~~~~GKSsli~~l~~~~~~~~--~~--t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~------~~~~~~~~~~d~ii 84 (211)
++|++|||||||++++++...... .+ +.........+. ...+.+||+||+..... .....+++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 589999999999999998654321 12 222333334444 45899999999865432 13444678899999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|+|++++....... ++..... .+.|+++|+||+|+............... ..
T Consensus 81 ~v~~~~~~~~~~~~~--~~~~~~~------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-~~------------------ 133 (163)
T cd00880 81 FVVDADLRADEEEEK--LLELLRE------RGKPVLLVLNKIDLLPEEEEEELLELRLL-IL------------------ 133 (163)
T ss_pred EEEeCCCCCCHHHHH--HHHHHHh------cCCeEEEEEEccccCChhhHHHHHHHHHh-hc------------------
Confidence 999999865422222 2222211 23899999999999865443322110000 00
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
......+++++||+++.| ++++++||.+
T Consensus 134 ---------------~~~~~~~~~~~sa~~~~~---v~~l~~~l~~ 161 (163)
T cd00880 134 ---------------LLLLGLPVIAVSALTGEG---IDELREALIE 161 (163)
T ss_pred ---------------ccccCCceEEEeeeccCC---HHHHHHHHHh
Confidence 012347889999999999 9999999976
No 201
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.83 E-value=4.3e-19 Score=144.09 Aligned_cols=156 Identities=13% Similarity=0.152 Sum_probs=107.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc--cccc--ccceeeEEEEecCceEEEEECCCchh----------hhhhhHHH
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYF--ESCT--SLKENVGNFTYEKKNIKIVDLPGEDR----------LRNKFFDQ 75 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~ 75 (211)
..+||+++|.||+|||||+|+|++.+-. ...+ |...-...+++++..+.++||+|..+ |...-...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 4599999999999999999999987743 3332 33344455888899999999999732 22212233
Q ss_pred hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC--CHHHHHHHHHHHHHHHhhhcc
Q psy1914 76 YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK--SSSVVKTLLQKELNLVRRTKS 153 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~ 153 (211)
....+|++++|+|++.+-+ +....+..+..+ .+.++++|+||+|+.+.. ...+....+..++.++
T Consensus 257 aI~~a~vvllviDa~~~~~---~qD~~ia~~i~~-----~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l----- 323 (444)
T COG1160 257 AIERADVVLLVIDATEGIS---EQDLRIAGLIEE-----AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFL----- 323 (444)
T ss_pred HHhhcCEEEEEEECCCCch---HHHHHHHHHHHH-----cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccc-----
Confidence 4667999999999988543 222223333322 338999999999998762 2333333444333311
Q ss_pred cccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 154 NQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.-.+++.+||++|.| +.++++.+.+
T Consensus 324 -----------------------------~~a~i~~iSA~~~~~---i~~l~~~i~~ 348 (444)
T COG1160 324 -----------------------------DFAPIVFISALTGQG---LDKLFEAIKE 348 (444)
T ss_pred -----------------------------cCCeEEEEEecCCCC---hHHHHHHHHH
Confidence 115778899999999 9999998865
No 202
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.83 E-value=2e-19 Score=146.33 Aligned_cols=148 Identities=16% Similarity=0.148 Sum_probs=104.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--ccccccc--ceeeEEEEecCceEEEEECCCchhhhh-------hhHHHhh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSL--KENVGNFTYEKKNIKIVDLPGEDRLRN-------KFFDQYK 77 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~ 77 (211)
+..+|++++|.||+|||||+|+|++.+. +...|.+ ..-...+.++|.++.++||+|.+.-.. +.....+
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 5689999999999999999999998774 4444433 344556899999999999999843211 1123346
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+.||.+++|+|++.+.. +....+... ...+.|+++|.||.||......... .
T Consensus 295 ~~ADlvL~v~D~~~~~~---~~d~~~~~~------~~~~~~~i~v~NK~DL~~~~~~~~~--~----------------- 346 (454)
T COG0486 295 EEADLVLFVLDASQPLD---KEDLALIEL------LPKKKPIIVVLNKADLVSKIELESE--K----------------- 346 (454)
T ss_pred HhCCEEEEEEeCCCCCc---hhhHHHHHh------cccCCCEEEEEechhcccccccchh--h-----------------
Confidence 77999999999988522 111111221 1133899999999999866542211 0
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+....+++.+||+||+| ++.|.+.|.+
T Consensus 347 -----------------------~~~~~~~i~iSa~t~~G---l~~L~~~i~~ 373 (454)
T COG0486 347 -----------------------LANGDAIISISAKTGEG---LDALREAIKQ 373 (454)
T ss_pred -----------------------ccCCCceEEEEecCccC---HHHHHHHHHH
Confidence 01124678899999999 9999988865
No 203
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.82 E-value=3.3e-19 Score=147.85 Aligned_cols=160 Identities=16% Similarity=0.153 Sum_probs=100.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccc---c---ccccceeeEE--------------EEe------------cCce
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFE---S---CTSLKENVGN--------------FTY------------EKKN 56 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~---~---~~t~~~~~~~--------------~~~------------~~~~ 56 (211)
.++++|+++|..++|||||+++|.+..... . ..|+...+.. ++. .+..
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 567899999999999999999997532211 0 0111111000 101 1347
Q ss_pred EEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH
Q psy1914 57 IKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV 136 (211)
Q Consensus 57 ~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~ 136 (211)
+.+||||||+.|..+ +......+|++++|+|+++... ..+..+.+..+.. ... .|+++|+||+|+.+.....+
T Consensus 82 i~liDtPGh~~f~~~-~~~g~~~aD~aIlVVDa~~g~~-~~qt~e~l~~l~~---~gi--~~iIVvvNK~Dl~~~~~~~~ 154 (406)
T TIGR03680 82 VSFVDAPGHETLMAT-MLSGAALMDGALLVIAANEPCP-QPQTKEHLMALEI---IGI--KNIVIVQNKIDLVSKEKALE 154 (406)
T ss_pred EEEEECCCHHHHHHH-HHHHHHHCCEEEEEEECCCCcc-ccchHHHHHHHHH---cCC--CeEEEEEEccccCCHHHHHH
Confidence 999999999999885 5556667999999999986421 1233333332211 111 47899999999975432222
Q ss_pred HHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 137 VKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 137 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.+.+.+.. . ....++++++||++|+| +++|+++|.+
T Consensus 155 ~~~~i~~~l~~-----------~---------------------~~~~~~ii~vSA~~g~g---i~~L~e~L~~ 193 (406)
T TIGR03680 155 NYEEIKEFVKG-----------T---------------------VAENAPIIPVSALHNAN---IDALLEAIEK 193 (406)
T ss_pred HHHHHHhhhhh-----------c---------------------ccCCCeEEEEECCCCCC---hHHHHHHHHH
Confidence 22222211110 0 01126889999999999 9999999975
No 204
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=2.6e-19 Score=145.37 Aligned_cols=147 Identities=19% Similarity=0.189 Sum_probs=103.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc--ccccc--ccceeeEEEEecCceEEEEECCCchhhh-----hhh---HHHhhhc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY--FESCT--SLKENVGNFTYEKKNIKIVDLPGEDRLR-----NKF---FDQYKSS 79 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~-----~~~---~~~~~~~ 79 (211)
..|+++|.||||||||+|||++.+. .+++| |....++...+.+..+.++||+|.+... .++ ....+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 6799999999999999999998774 45554 5556778899999999999999985321 111 2334667
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
||++|||+|+...- ....+.+..++.. .++|+++|+||+|-.... .....+.+ +.
T Consensus 84 ADvilfvVD~~~Gi---t~~D~~ia~~Lr~-----~~kpviLvvNK~D~~~~e---~~~~efys-lG------------- 138 (444)
T COG1160 84 ADVILFVVDGREGI---TPADEEIAKILRR-----SKKPVILVVNKIDNLKAE---ELAYEFYS-LG------------- 138 (444)
T ss_pred CCEEEEEEeCCCCC---CHHHHHHHHHHHh-----cCCCEEEEEEcccCchhh---hhHHHHHh-cC-------------
Confidence 99999999996632 2333444444432 238999999999976221 11111211 11
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
. -..+.+||..|.| +.+|++.+.+
T Consensus 139 -----------------------~-g~~~~ISA~Hg~G---i~dLld~v~~ 162 (444)
T COG1160 139 -----------------------F-GEPVPISAEHGRG---IGDLLDAVLE 162 (444)
T ss_pred -----------------------C-CCceEeehhhccC---HHHHHHHHHh
Confidence 0 2447799999999 9999998875
No 205
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.82 E-value=7.2e-19 Score=151.54 Aligned_cols=152 Identities=16% Similarity=0.237 Sum_probs=101.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc--cc-----cc----c-------cccceeeEEEEec-----CceEEEEECCCchh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK--YF-----ES----C-------TSLKENVGNFTYE-----KKNIKIVDLPGEDR 67 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~--~~-----~~----~-------~t~~~~~~~~~~~-----~~~~~i~D~~G~~~ 67 (211)
-.+++++|+.++|||||+.+|+... .. .. . .|+......+.+. +..+++|||||+..
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 3589999999999999999998521 11 00 0 1222222334443 23799999999999
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHH
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNL 147 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~ 147 (211)
|.. .+..+++.+|++|+|+|+++... . +....+..... .++|+++|+||+|+.+.. .....+.+.+.+..
T Consensus 87 F~~-~v~~sl~~aD~aILVVDas~gv~-~-qt~~~~~~~~~------~~lpiIvViNKiDl~~a~-~~~v~~ei~~~lg~ 156 (600)
T PRK05433 87 FSY-EVSRSLAACEGALLVVDASQGVE-A-QTLANVYLALE------NDLEIIPVLNKIDLPAAD-PERVKQEIEDVIGI 156 (600)
T ss_pred HHH-HHHHHHHHCCEEEEEEECCCCCC-H-HHHHHHHHHHH------CCCCEEEEEECCCCCccc-HHHHHHHHHHHhCC
Confidence 988 58888999999999999988543 2 22223333322 238999999999996543 22222233221110
Q ss_pred HhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 148 VRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++.+||++|.| +++|+++|.+
T Consensus 157 -----------------------------------~~~~vi~iSAktG~G---I~~Ll~~I~~ 181 (600)
T PRK05433 157 -----------------------------------DASDAVLVSAKTGIG---IEEVLEAIVE 181 (600)
T ss_pred -----------------------------------CcceEEEEecCCCCC---HHHHHHHHHH
Confidence 002478999999999 9999999864
No 206
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=3.3e-19 Score=157.10 Aligned_cols=149 Identities=17% Similarity=0.197 Sum_probs=99.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--cccccccce--eeEEEEecCceEEEEECCCchh--------hhhhhHHHh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSLKE--NVGNFTYEKKNIKIVDLPGEDR--------LRNKFFDQY 76 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 76 (211)
....+|+++|.+|||||||+|+|++... ....|.++. .....++++..+.+|||||... +.. ....+
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~-~~~~~ 351 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIAS-QAQIA 351 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHH-HHHHH
Confidence 4457899999999999999999998764 333343332 2233566777999999999753 333 24456
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccc
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQL 156 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (211)
++.+|++++|+|+++... .....+...+.. .++|+++|+||+|+..... ...+... +
T Consensus 352 ~~~aD~iL~VvDa~~~~~---~~d~~i~~~Lr~-----~~~pvIlV~NK~D~~~~~~--~~~~~~~--l----------- 408 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLT---STDERIVRMLRR-----AGKPVVLAVNKIDDQASEY--DAAEFWK--L----------- 408 (712)
T ss_pred HHhCCEEEEEEECCCCCC---HHHHHHHHHHHh-----cCCCEEEEEECcccccchh--hHHHHHH--c-----------
Confidence 788999999999976322 222233333332 2389999999999864311 1111000 0
Q ss_pred ccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 157 EDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+.. ..+++||++|.| +++|+++|.+
T Consensus 409 -------------------------g~~-~~~~iSA~~g~G---I~eLl~~i~~ 433 (712)
T PRK09518 409 -------------------------GLG-EPYPISAMHGRG---VGDLLDEALD 433 (712)
T ss_pred -------------------------CCC-CeEEEECCCCCC---chHHHHHHHH
Confidence 001 235799999999 9999999875
No 207
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.82 E-value=5.3e-19 Score=147.74 Aligned_cols=117 Identities=20% Similarity=0.230 Sum_probs=78.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC--cccc--------------------------------cccccceeeEEEEec
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYS--KYFE--------------------------------SCTSLKENVGNFTYE 53 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~ 53 (211)
.++.++|+++|+.++|||||+++|+.. .... ...|.......+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 567899999999999999999999852 1110 012233333445666
Q ss_pred CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhH-HHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTL-RDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
+..+.+||||||+.|... ....+..+|++++|+|+++.+... .+...++. +... ... .|+++|+||+|+.+
T Consensus 84 ~~~i~iiDtpGh~~f~~~-~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~--~~~--~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKN-MITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LART--LGI--NQLIVAINKMDSVN 155 (426)
T ss_pred CeEEEEEECCCHHHHHHH-HHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHH--cCC--CeEEEEEEChhccC
Confidence 679999999999988774 444567899999999998853211 11222211 2211 112 57999999999974
No 208
>KOG4252|consensus
Probab=99.82 E-value=1.5e-20 Score=133.94 Aligned_cols=118 Identities=13% Similarity=0.170 Sum_probs=97.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEe--cCceEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTY--EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
-+|++++|+.++||||+++++|.+-|...+ .|++...- .+.+ ++..+.+||++|++.+.. +...|++++.+.++
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDa-ItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDA-ITKAYYRGAQASVL 98 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHH-HHHHHhccccceEE
Confidence 479999999999999999999999998877 46554332 2333 334778999999999999 89999999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS 134 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 134 (211)
||..+|..+ |+.+.+|..++.+. ..+ +|.++|-||+||.+....
T Consensus 99 VFSTTDr~S-Fea~~~w~~kv~~e--~~~--IPtV~vqNKIDlveds~~ 142 (246)
T KOG4252|consen 99 VFSTTDRYS-FEATLEWYNKVQKE--TER--IPTVFVQNKIDLVEDSQM 142 (246)
T ss_pred EEecccHHH-HHHHHHHHHHHHHH--hcc--CCeEEeeccchhhHhhhc
Confidence 999999766 98999888887653 233 999999999999876543
No 209
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.82 E-value=8.8e-19 Score=151.24 Aligned_cols=155 Identities=14% Similarity=0.203 Sum_probs=101.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc---cccc---ccccceeeEEEEe-cCceEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK---YFES---CTSLKENVGNFTY-EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~---~~~~---~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+-|+++|+.++|||||+++|++.. +... ..|+...+..+.. ++..+.+||||||++|..+ ....+..+|+++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~-m~~g~~~~D~~l 79 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSN-MLAGVGGIDHAL 79 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHH-HHHHhhcCCEEE
Confidence 358999999999999999998633 2222 2344333334433 3458899999999999875 445577899999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|+.+.. ..+..+.+. ++.. .++| +++|+||+|+.+........+.+.+.+... .
T Consensus 80 LVVda~eg~--~~qT~ehl~-il~~-----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~------~-------- 137 (614)
T PRK10512 80 LVVACDDGV--MAQTREHLA-ILQL-----TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREY------G-------- 137 (614)
T ss_pred EEEECCCCC--cHHHHHHHH-HHHH-----cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhc------C--------
Confidence 999997632 233444433 2221 1145 579999999975333333333333222110 0
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++||++|+| +++|+++|.+
T Consensus 138 ------------------~~~~~ii~VSA~tG~g---I~~L~~~L~~ 163 (614)
T PRK10512 138 ------------------FAEAKLFVTAATEGRG---IDALREHLLQ 163 (614)
T ss_pred ------------------CCCCcEEEEeCCCCCC---CHHHHHHHHH
Confidence 0125789999999999 9999999875
No 210
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.82 E-value=6.1e-19 Score=135.93 Aligned_cols=90 Identities=24% Similarity=0.298 Sum_probs=65.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecCceEEEEECCCchhhh-------hhhHHHhhhcCC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEKKNIKIVDLPGEDRLR-------NKFFDQYKSSAK 81 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~d 81 (211)
.+|+++|++|||||||+++|++... ...+ +|..+..+.+.+++..+.+||+||+.... . ....+++++|
T Consensus 1 ~~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~-~~l~~~~~ad 79 (233)
T cd01896 1 ARVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGR-QVIAVARTAD 79 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHH-HHHHhhccCC
Confidence 3799999999999999999998653 2333 34456667788888899999999984322 2 1334678899
Q ss_pred EEEEEEeCCCchhhHHHHHHH
Q psy1914 82 GIVYVLDSSTVQKTLRDVAES 102 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~ 102 (211)
++++|+|++++......+.+.
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~ 100 (233)
T cd01896 80 LILMVLDATKPEGHREILERE 100 (233)
T ss_pred EEEEEecCCcchhHHHHHHHH
Confidence 999999998755434333333
No 211
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.81 E-value=4.3e-19 Score=136.97 Aligned_cols=183 Identities=15% Similarity=0.178 Sum_probs=114.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcc--------c-----ccc--------cccceeeEEEEecCceEEEEECCCchhhhhh
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKY--------F-----ESC--------TSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~--------~-----~~~--------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 71 (211)
+|+++|+.|+|||||+++|+...- . .++ .|+......+.+++..+++|||||+..|..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~- 79 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIA- 79 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHH-
Confidence 489999999999999999985310 0 000 122334455677778999999999999888
Q ss_pred hHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhh
Q psy1914 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRT 151 (211)
Q Consensus 72 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 151 (211)
.+..+++.+|++++|+|+++... .+...++..... .++|+++++||+|+.+.. .....+.+.+.+..-...
T Consensus 80 ~~~~~l~~aD~~IlVvd~~~g~~--~~~~~~~~~~~~------~~~P~iivvNK~D~~~a~-~~~~~~~i~~~~~~~~~~ 150 (237)
T cd04168 80 EVERSLSVLDGAILVISAVEGVQ--AQTRILWRLLRK------LNIPTIIFVNKIDRAGAD-LEKVYQEIKEKLSSDIVP 150 (237)
T ss_pred HHHHHHHHhCeEEEEEeCCCCCC--HHHHHHHHHHHH------cCCCEEEEEECccccCCC-HHHHHHHHHHHHCCCeEE
Confidence 47778899999999999987433 234444443322 238999999999998653 344555555555421110
Q ss_pred c-ccc-------cccc----------hhhcccccccCCCCCCeeecCC----------CCcEEEEEEeeecCCCccchHH
Q psy1914 152 K-SNQ-------LEDT----------NDVAANQTFLGNPDKDFEFSDL----------YNQVSFCDTTGLDSASEYDVEQ 203 (211)
Q Consensus 152 ~-~~~-------~~~~----------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~tg~g~~~i~~ 203 (211)
. ... .... .+++....+++ ++.++-+++ ..-++++..||.++.| +.+
T Consensus 151 ~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~--~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~G---v~~ 225 (237)
T cd04168 151 MQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLE--GGPIEELELDNELSARIAKRKVFPVYHGSALKGIG---IEE 225 (237)
T ss_pred EECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcC---HHH
Confidence 0 000 0000 00000111111 122221111 2458889999999999 999
Q ss_pred HHHHHhh
Q psy1914 204 LQDWMVT 210 (211)
Q Consensus 204 l~~~i~~ 210 (211)
|++.|.+
T Consensus 226 ll~~~~~ 232 (237)
T cd04168 226 LLEGITK 232 (237)
T ss_pred HHHHHHH
Confidence 9999875
No 212
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.81 E-value=1.1e-18 Score=133.59 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=74.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc--cc------------------------ccc--------cccceeeEEEEecCceEE
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSK--YF------------------------ESC--------TSLKENVGNFTYEKKNIK 58 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~--~~------------------------~~~--------~t~~~~~~~~~~~~~~~~ 58 (211)
+|+++|+.++|||||+.+|+... .. .+. .|.......+++++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 48999999999999999996311 00 000 122233445667778999
Q ss_pred EEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchh-----hHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 59 IVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQK-----TLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 59 i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
+|||||+..+... +...+..+|++++|+|+++... ...+....+..... ... .|+++++||+|+...
T Consensus 81 liDtpG~~~~~~~-~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~iiivvNK~Dl~~~ 152 (219)
T cd01883 81 ILDAPGHRDFVPN-MITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART---LGV--KQLIVAVNKMDDVTV 152 (219)
T ss_pred EEECCChHHHHHH-HHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH---cCC--CeEEEEEEccccccc
Confidence 9999999888774 5556677999999999987410 01122222222211 122 689999999999743
No 213
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.81 E-value=1.7e-18 Score=148.84 Aligned_cols=113 Identities=18% Similarity=0.229 Sum_probs=75.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccccc-----ccceeeEEEEe---------c-------CceEEEEECCCch
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCT-----SLKENVGNFTY---------E-------KKNIKIVDLPGED 66 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~-----t~~~~~~~~~~---------~-------~~~~~i~D~~G~~ 66 (211)
..+.+.|+++|++++|||||+++|.+.......+ +++........ . -..+.+|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 3456789999999999999999998655432221 22222111111 0 0137899999999
Q ss_pred hhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 67 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
.|.. ++...+..+|++++|+|+++... .+....+..+ .. .++|+++++||+|+.
T Consensus 83 ~f~~-~~~~~~~~aD~~IlVvDa~~g~~--~qt~e~i~~~-~~-----~~vpiIvviNK~D~~ 136 (586)
T PRK04004 83 AFTN-LRKRGGALADIAILVVDINEGFQ--PQTIEAINIL-KR-----RKTPFVVAANKIDRI 136 (586)
T ss_pred HHHH-HHHHhHhhCCEEEEEEECCCCCC--HhHHHHHHHH-HH-----cCCCEEEEEECcCCc
Confidence 9988 67777788999999999987211 2222222222 11 238999999999985
No 214
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.81 E-value=1.2e-18 Score=144.52 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=100.1
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCccc---c---cccccceeeEEEEe------------------c-------
Q psy1914 5 KFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYF---E---SCTSLKENVGNFTY------------------E------- 53 (211)
Q Consensus 5 ~~~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~---~---~~~t~~~~~~~~~~------------------~------- 53 (211)
+.+.+++++|+++|+.++|||||+.+|.+.... . ...|+........+ +
T Consensus 3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (411)
T PRK04000 3 WEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE 82 (411)
T ss_pred cccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccc
Confidence 456788999999999999999999999653111 0 01122211111111 1
Q ss_pred -CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC
Q psy1914 54 -KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK 132 (211)
Q Consensus 54 -~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 132 (211)
...+++|||||++.|... .......+|++++|+|++++.. ..+..+.+..+. . ... .|+++|+||+|+.+..
T Consensus 83 ~~~~i~liDtPG~~~f~~~-~~~~~~~~D~~llVVDa~~~~~-~~~t~~~l~~l~-~--~~i--~~iiVVlNK~Dl~~~~ 155 (411)
T PRK04000 83 LLRRVSFVDAPGHETLMAT-MLSGAALMDGAILVIAANEPCP-QPQTKEHLMALD-I--IGI--KNIVIVQNKIDLVSKE 155 (411)
T ss_pred cccEEEEEECCCHHHHHHH-HHHHHhhCCEEEEEEECCCCCC-ChhHHHHHHHHH-H--cCC--CcEEEEEEeeccccch
Confidence 247899999999988774 3333456899999999986421 122222222221 1 111 4689999999997543
Q ss_pred CHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 133 SSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
......+.+...+.. . ....++++++||++|+| +++|+++|.+
T Consensus 156 ~~~~~~~~i~~~l~~---~-----------------------------~~~~~~ii~vSA~~g~g---I~~L~~~L~~ 198 (411)
T PRK04000 156 RALENYEQIKEFVKG---T-----------------------------VAENAPIIPVSALHKVN---IDALIEAIEE 198 (411)
T ss_pred hHHHHHHHHHHHhcc---c-----------------------------cCCCCeEEEEECCCCcC---HHHHHHHHHH
Confidence 222112222211110 0 01126889999999999 9999999875
No 215
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.80 E-value=3.3e-18 Score=147.10 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=109.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc--Cccccc-----------------ccccceeeEEEEecCceEEEEECCCchhhhhhhH
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY--SKYFES-----------------CTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFF 73 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~--~~~~~~-----------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 73 (211)
+|+++|+.++|||||+++|+. +.+... ..|+......+.+++..+++||||||.+|.. .+
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~-ev 81 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGG-EV 81 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHH-HH
Confidence 699999999999999999985 222111 1233334456788888999999999999988 47
Q ss_pred HHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcc
Q psy1914 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKS 153 (211)
Q Consensus 74 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 153 (211)
..+++.+|++++|+|+.+.. ..+...+|..+.. .++|+++|+||+|+.+.+. .++.+.+...+.....
T Consensus 82 ~~~l~~aD~alLVVDa~~G~--~~qT~~~l~~a~~------~~ip~IVviNKiD~~~a~~-~~v~~ei~~l~~~~g~--- 149 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP--MPQTRFVLKKALE------LGLKPIVVINKIDRPSARP-DEVVDEVFDLFAELGA--- 149 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC--cHHHHHHHHHHHH------CCCCEEEEEECCCCCCcCH-HHHHHHHHHHHHhhcc---
Confidence 78889999999999998732 4556666666554 2389999999999975543 2233333333321100
Q ss_pred cccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCC----------CccchHHHHHHHhh
Q psy1914 154 NQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSA----------SEYDVEQLQDWMVT 210 (211)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~----------g~~~i~~l~~~i~~ 210 (211)
+. ++ ..++++.+||++|. | +++|++.|.+
T Consensus 150 ------~~-----------------e~--l~~pvl~~SA~~g~~~~~~~~~~~g---i~~Lld~Iv~ 188 (594)
T TIGR01394 150 ------DD-----------------EQ--LDFPIVYASGRAGWASLDLDDPSDN---MAPLFDAIVR 188 (594)
T ss_pred ------cc-----------------cc--ccCcEEechhhcCcccccCcccccC---HHHHHHHHHH
Confidence 00 01 12578999999995 7 8888887764
No 216
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.80 E-value=7.9e-18 Score=122.78 Aligned_cols=152 Identities=20% Similarity=0.298 Sum_probs=94.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccc-ccccccee--eEEEEecCceEEEEECCCchh----------hhhhhHHHhhh-
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFE-SCTSLKEN--VGNFTYEKKNIKIVDLPGEDR----------LRNKFFDQYKS- 78 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~~- 78 (211)
.|+++|.+|+|||||++++.++.+.. ..++.+.. ...+..++ .+.+|||||... +.. ....++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~-~~~~~~~~ 78 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND-KFRLVDLPGYGYAKVSKEVKEKWGK-LIEEYLEN 78 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC-eEEEecCCCccccccCHHHHHHHHH-HHHHHHHh
Confidence 37999999999999999999654432 22333322 22233332 899999999532 333 3344444
Q ss_pred --cCCEEEEEEeCCCchhhH-HHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccc
Q psy1914 79 --SAKGIVYVLDSSTVQKTL-RDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 79 --~~d~ii~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (211)
..+.+++++|........ .....++.. .+.|+++|+||+|+............+...+..
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~---------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~-------- 141 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEE---------LGIPFLVVLTKADKLKKSELAKALKEIKKELKL-------- 141 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHHHHHHHHHH---------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh--------
Confidence 357888999987643212 222233222 128999999999996443333222233222210
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
.....+++++||+++.| +++++++|.++
T Consensus 142 -------------------------~~~~~~~~~~Sa~~~~~---~~~l~~~l~~~ 169 (170)
T cd01876 142 -------------------------FEIDPPIILFSSLKGQG---IDELRALIEKW 169 (170)
T ss_pred -------------------------ccCCCceEEEecCCCCC---HHHHHHHHHHh
Confidence 01225778999999999 99999999763
No 217
>PRK10218 GTP-binding protein; Provisional
Probab=99.79 E-value=5.4e-18 Score=145.70 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=84.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc--Ccccccc-----------------cccceeeEEEEecCceEEEEECCCchhhhhh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY--SKYFESC-----------------TSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~--~~~~~~~-----------------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 71 (211)
-.+|+++|+.++|||||+++|+. +.+.... .|+......+.+++..+++|||||+..|..
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~- 83 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG- 83 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH-
Confidence 35899999999999999999996 3332211 122223344567777999999999999998
Q ss_pred hHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH
Q psy1914 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS 134 (211)
Q Consensus 72 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 134 (211)
.+..+++.+|++++|+|+.+.. ..+....+..... .++|.++++||+|+.+++..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~--~~qt~~~l~~a~~------~gip~IVviNKiD~~~a~~~ 138 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGP--MPQTRFVTKKAFA------YGLKPIVVINKVDRPGARPD 138 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCc--cHHHHHHHHHHHH------cCCCEEEEEECcCCCCCchh
Confidence 5888899999999999998743 2344444554443 23899999999999865543
No 218
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=2.6e-17 Score=120.74 Aligned_cols=157 Identities=18% Similarity=0.307 Sum_probs=105.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc---cccccccceeeEEEEecCceEEEEECCCc----------hhhhhhhHHH
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY---FESCTSLKENVGNFTYEKKNIKIVDLPGE----------DRLRNKFFDQ 75 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~---~~~~~t~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~~~ 75 (211)
....-|+++|.+|||||||+|+|++.+- ++..|..+.....+.+++. +.++|.||. +.+.. +...
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~-~~lVDlPGYGyAkv~k~~~e~w~~-~i~~ 99 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE-LRLVDLPGYGYAKVPKEVKEKWKK-LIEE 99 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc-EEEEeCCCcccccCCHHHHHHHHH-HHHH
Confidence 3457899999999999999999999663 3444555555566666664 889999996 23333 4455
Q ss_pred hhh---cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhc
Q psy1914 76 YKS---SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTK 152 (211)
Q Consensus 76 ~~~---~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 152 (211)
|++ +-.++++++|+..+.. .......+++.. .++|+++++||+|.....+.......+.+.+..
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~---~~D~em~~~l~~-----~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~----- 166 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPK---DLDREMIEFLLE-----LGIPVIVVLTKADKLKKSERNKQLNKVAEELKK----- 166 (200)
T ss_pred HHhhchhheEEEEEEECCCCCc---HHHHHHHHHHHH-----cCCCeEEEEEccccCChhHHHHHHHHHHHHhcC-----
Confidence 654 3577888899977443 222333444433 239999999999998776554444444433331
Q ss_pred ccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 153 SNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++...++..|+.++.| ++++.+.|.+
T Consensus 167 ---------------------------~~~~~~~~~~~ss~~k~G---i~~l~~~i~~ 194 (200)
T COG0218 167 ---------------------------PPPDDQWVVLFSSLKKKG---IDELKAKILE 194 (200)
T ss_pred ---------------------------CCCccceEEEEecccccC---HHHHHHHHHH
Confidence 011122278899999999 9999987754
No 219
>KOG1489|consensus
Probab=99.79 E-value=3.6e-18 Score=132.30 Aligned_cols=154 Identities=23% Similarity=0.306 Sum_probs=105.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecCc-eEEEEECCCchh-------hhhhhHHHhhhcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEKK-NIKIVDLPGEDR-------LRNKFFDQYKSSA 80 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~~-~~~i~D~~G~~~-------~~~~~~~~~~~~~ 80 (211)
..+.++|.||+|||||++++...+. ...| +|..+.++.+.+++. .+.+-|.||.-. .-.++.. .++.|
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLr-HiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLR-HIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHH-HHHhh
Confidence 4678999999999999999998775 4555 466677788888887 699999999732 1222333 34669
Q ss_pred CEEEEEEeCCCch--hhHHHHHHHHHHHHc-CcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 81 KGIVYVLDSSTVQ--KTLRDVAESLYVILA-DPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 81 d~ii~v~d~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+.++||+|.+.+. +..++....+.++-. ...+.+ .|.++|+||+|+++... ...+.+.+.+..
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~--rp~liVaNKiD~~eae~--~~l~~L~~~lq~---------- 341 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLAD--RPALIVANKIDLPEAEK--NLLSSLAKRLQN---------- 341 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhcc--CceEEEEeccCchhHHH--HHHHHHHHHcCC----------
Confidence 9999999998751 224444443333321 223444 89999999999962221 111233333321
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++++||++|+| +++|++-|.+
T Consensus 342 ---------------------------~~V~pvsA~~~eg---l~~ll~~lr~ 364 (366)
T KOG1489|consen 342 ---------------------------PHVVPVSAKSGEG---LEELLNGLRE 364 (366)
T ss_pred ---------------------------CcEEEeeeccccc---hHHHHHHHhh
Confidence 3689999999999 9999988765
No 220
>PRK12736 elongation factor Tu; Reviewed
Probab=99.78 E-value=1e-17 Score=138.48 Aligned_cols=115 Identities=19% Similarity=0.209 Sum_probs=77.3
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcc------------ccc-----ccccceeeEE--EEecCceEEEEECCCchh
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKY------------FES-----CTSLKENVGN--FTYEKKNIKIVDLPGEDR 67 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~------------~~~-----~~t~~~~~~~--~~~~~~~~~i~D~~G~~~ 67 (211)
+.+++++|+++|+.++|||||+++|++... ... ...+...... +..++..+.++|||||+.
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence 367889999999999999999999985210 000 1112222222 333455899999999998
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCccC
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQDQTL 130 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 130 (211)
|..++ ......+|++++|+|+.+.. ..+..+.+..+.. .++| +++++||+|+.+
T Consensus 88 f~~~~-~~~~~~~d~~llVvd~~~g~--~~~t~~~~~~~~~------~g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 88 YVKNM-ITGAAQMDGAILVVAATDGP--MPQTREHILLARQ------VGVPYLVVFLNKVDLVD 142 (394)
T ss_pred HHHHH-HHHHhhCCEEEEEEECCCCC--chhHHHHHHHHHH------cCCCEEEEEEEecCCcc
Confidence 87754 44456799999999997632 2334444443322 1277 678999999974
No 221
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.78 E-value=1.9e-17 Score=129.91 Aligned_cols=124 Identities=18% Similarity=0.225 Sum_probs=83.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc--cc---------------ccc--------cccceeeEEEEecCceEEEEECCCch
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK--YF---------------ESC--------TSLKENVGNFTYEKKNIKIVDLPGED 66 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~--~~---------------~~~--------~t~~~~~~~~~~~~~~~~i~D~~G~~ 66 (211)
.+|+++|++|+|||||+++|+... .. .++ .++......+.+++..+++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 579999999999999999998421 00 011 12223344567778899999999999
Q ss_pred hhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHH
Q psy1914 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKEL 145 (211)
Q Consensus 67 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~ 145 (211)
+|... ...+++.+|++++|+|+++... .....++. .... .++|+++++||+|+..+... ...+.+.+.+
T Consensus 83 df~~~-~~~~l~~aD~~IlVvda~~g~~--~~~~~i~~-~~~~-----~~~P~iivvNK~D~~~a~~~-~~~~~l~~~l 151 (267)
T cd04169 83 DFSED-TYRTLTAVDSAVMVIDAAKGVE--PQTRKLFE-VCRL-----RGIPIITFINKLDREGRDPL-ELLDEIEEEL 151 (267)
T ss_pred HHHHH-HHHHHHHCCEEEEEEECCCCcc--HHHHHHHH-HHHh-----cCCCEEEEEECCccCCCCHH-HHHHHHHHHH
Confidence 98874 5566788999999999987432 22333332 2221 23899999999998766432 2333444433
No 222
>COG2262 HflX GTPases [General function prediction only]
Probab=99.78 E-value=9.1e-18 Score=134.57 Aligned_cols=151 Identities=17% Similarity=0.249 Sum_probs=107.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc-ccc--cccceeeEEEEecC-ceEEEEECCCc---------hhhhhhhHHH
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYF-ESC--TSLKENVGNFTYEK-KNIKIVDLPGE---------DRLRNKFFDQ 75 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~-~~~--~t~~~~~~~~~~~~-~~~~i~D~~G~---------~~~~~~~~~~ 75 (211)
..-+.|+++|.+|+|||||+|+|++.... .+. .|..+....+.+.+ ..+.+-||.|. +.|+. ....
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFks-TLEE 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKS-TLEE 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHH-HHHH
Confidence 45679999999999999999999976542 322 56677777788875 58999999997 34555 2333
Q ss_pred hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccc
Q psy1914 76 YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (211)
...+|.++.|+|+++|. ..+..+-...++..-...+ +|+++|.||+|+...... ...+..
T Consensus 269 -~~~aDlllhVVDaSdp~--~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~~~~~~---~~~~~~------------ 328 (411)
T COG2262 269 -VKEADLLLHVVDASDPE--ILEKLEAVEDVLAEIGADE--IPIILVLNKIDLLEDEEI---LAELER------------ 328 (411)
T ss_pred -hhcCCEEEEEeecCChh--HHHHHHHHHHHHHHcCCCC--CCEEEEEecccccCchhh---hhhhhh------------
Confidence 34599999999999974 4444455566665544444 999999999998755431 111110
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+ ..+.+||++|+| +++|++.|.+
T Consensus 329 --------------------------~~~-~~v~iSA~~~~g---l~~L~~~i~~ 353 (411)
T COG2262 329 --------------------------GSP-NPVFISAKTGEG---LDLLRERIIE 353 (411)
T ss_pred --------------------------cCC-CeEEEEeccCcC---HHHHHHHHHH
Confidence 001 347799999999 9999988765
No 223
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.78 E-value=4.8e-17 Score=128.14 Aligned_cols=123 Identities=20% Similarity=0.208 Sum_probs=84.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc--------c-------------cccccceeeEEEEecCceEEEEECCCchhhhhh
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYF--------E-------------SCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~--------~-------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 71 (211)
+|+++|++|+|||||+++|+...-. . ...++......+.+++..+++|||||+..+..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~- 79 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVG- 79 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHH-
Confidence 4899999999999999999742210 0 01233344556677788999999999998877
Q ss_pred hHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHH
Q psy1914 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKEL 145 (211)
Q Consensus 72 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~ 145 (211)
.+..++..+|++++|+|+++... ......+..... .++|.++++||+|+... ......+.+.+.+
T Consensus 80 ~~~~~l~~aD~~i~Vvd~~~g~~--~~~~~~~~~~~~------~~~p~iivvNK~D~~~~-~~~~~~~~l~~~~ 144 (268)
T cd04170 80 ETRAALRAADAALVVVSAQSGVE--VGTEKLWEFADE------AGIPRIIFINKMDRERA-DFDKTLAALQEAF 144 (268)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCC--HHHHHHHHHHHH------cCCCEEEEEECCccCCC-CHHHHHHHHHHHh
Confidence 46777888999999999987433 223333333221 23899999999999865 3334444555444
No 224
>KOG1423|consensus
Probab=99.77 E-value=7.6e-18 Score=129.92 Aligned_cols=178 Identities=18% Similarity=0.151 Sum_probs=103.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc---cc-cceeeEEEEecCceEEEEECCCchh------------hhhhh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC---TS-LKENVGNFTYEKKNIKIVDLPGEDR------------LRNKF 72 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~---~t-~~~~~~~~~~~~~~~~i~D~~G~~~------------~~~~~ 72 (211)
.+..+|+++|.||+|||||.|.+.+.+..... .| .....+.++-+...+.++||||.-. +..+.
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 34579999999999999999999998864433 23 3344555677777999999999621 11111
Q ss_pred HHHhhhcCCEEEEEEeCCCchhhH-HHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHH-HHHHHh
Q psy1914 73 FDQYKSSAKGIVYVLDSSTVQKTL-RDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQK-ELNLVR 149 (211)
Q Consensus 73 ~~~~~~~~d~ii~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~-~~~~~~ 149 (211)
...+.+||+++.++|++++...+ ..+...+... +++|-++|+||+|........ ...+.+.+ ++..
T Consensus 150 -~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y--------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~-- 218 (379)
T KOG1423|consen 150 -RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY--------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAK-- 218 (379)
T ss_pred -HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH--------hcCCceeeccchhcchhhhHHhhhHHhccccccch--
Confidence 22456799999999999643212 1122222222 228999999999987654321 11111110 0000
Q ss_pred hhcccccccchhhcccccccCCCCCCeeecCCCC--cEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 150 RTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYN--QVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+..++... .....-+-...+| --.+|.+||++|+| |++|.+||..
T Consensus 219 -------~kl~v~~~f~~---~p~~~~~~~~~gwshfe~vF~vSaL~G~G---ikdlkqyLms 268 (379)
T KOG1423|consen 219 -------LKLEVQEKFTD---VPSDEKWRTICGWSHFERVFMVSALYGEG---IKDLKQYLMS 268 (379)
T ss_pred -------hhhhHHHHhcc---CCcccccccccCcccceeEEEEecccccC---HHHHHHHHHh
Confidence 00111111000 0000000001112 25689999999999 9999999864
No 225
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=2.5e-17 Score=128.52 Aligned_cols=126 Identities=20% Similarity=0.213 Sum_probs=90.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecCceEEEEECCCchh-----h---hhhhHHHhhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEKKNIKIVDLPGEDR-----L---RNKFFDQYKS 78 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~-----~---~~~~~~~~~~ 78 (211)
.-+.|++.|.||||||||++++++.+. ...|| |.+.+++++..+...++++||||.-+ . ..+-....-.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 457899999999999999999999876 56665 67788999999999999999999721 1 1100111112
Q ss_pred cCCEEEEEEeCCCchh-hHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHH
Q psy1914 79 SAKGIVYVLDSSTVQK-TLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTL 140 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 140 (211)
-.++|+|++|.+..+. +++.....+..+...- + .|+++|+||+|+......++....
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~--~p~v~V~nK~D~~~~e~~~~~~~~ 304 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKELF---K--APIVVVINKIDIADEEKLEEIEAS 304 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---C--CCeEEEEecccccchhHHHHHHHH
Confidence 3689999999987432 3556666666665431 2 799999999999755544444433
No 226
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.6e-17 Score=137.10 Aligned_cols=158 Identities=18% Similarity=0.207 Sum_probs=111.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc---cccceeeEEEEec---CceEEEEECCCchhhhhhhHHHhhhcCCE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC---TSLKENVGNFTYE---KKNIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~---~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
.+.+-|.++|+...|||||+..+......... .|....-..+.++ ...+.++|||||+.|.. +...-.+-+|+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~-mRaRGa~vtDI 81 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTA-MRARGASVTDI 81 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHH-HHhcCCccccE
Confidence 35577999999999999999999987764433 2332222334443 35899999999999998 67766677999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
+|+|+|+.|.- ..++.+-+..... .++|++++.||+|+++.. +..+..++.+.
T Consensus 82 aILVVa~dDGv--~pQTiEAI~hak~------a~vP~iVAiNKiDk~~~n-p~~v~~el~~~------------------ 134 (509)
T COG0532 82 AILVVAADDGV--MPQTIEAINHAKA------AGVPIVVAINKIDKPEAN-PDKVKQELQEY------------------ 134 (509)
T ss_pred EEEEEEccCCc--chhHHHHHHHHHH------CCCCEEEEEecccCCCCC-HHHHHHHHHHc------------------
Confidence 99999998843 3555555555432 339999999999998544 33333333211
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
.+.-+..++.+.++++||+||+| +++|++.|.
T Consensus 135 ------------gl~~E~~gg~v~~VpvSA~tg~G---i~eLL~~il 166 (509)
T COG0532 135 ------------GLVPEEWGGDVIFVPVSAKTGEG---IDELLELIL 166 (509)
T ss_pred ------------CCCHhhcCCceEEEEeeccCCCC---HHHHHHHHH
Confidence 11112335669999999999999 999998774
No 227
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.77 E-value=9.2e-17 Score=126.17 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=85.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc--Cccc-------------------ccccccceeeEEEEecCceEEEEECCCchhhhhh
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY--SKYF-------------------ESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 71 (211)
+|+++|++|+|||||+++|+. +... ....|+......+.+++..+++|||||+..+..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~- 79 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTI- 79 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHH-
Confidence 489999999999999999973 1110 001233334556778888999999999999888
Q ss_pred hHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHH
Q psy1914 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 72 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~ 146 (211)
.+..+++.+|++++|+|+.+... .+....+..... .++|+++++||+|+.+.. .....+.+.+.+.
T Consensus 80 ~~~~~l~~aD~ailVVDa~~g~~--~~t~~~~~~~~~------~~~p~ivviNK~D~~~a~-~~~~~~~l~~~l~ 145 (270)
T cd01886 80 EVERSLRVLDGAVAVFDAVAGVE--PQTETVWRQADR------YNVPRIAFVNKMDRTGAD-FFRVVEQIREKLG 145 (270)
T ss_pred HHHHHHHHcCEEEEEEECCCCCC--HHHHHHHHHHHH------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhC
Confidence 47778899999999999987432 223333333322 238999999999997543 3334444544443
No 228
>PRK12735 elongation factor Tu; Reviewed
Probab=99.76 E-value=2.8e-17 Score=135.98 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=77.1
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcC-------ccc-----c-------cccccceeeEEEEecCceEEEEECCCchh
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYS-------KYF-----E-------SCTSLKENVGNFTYEKKNIKIVDLPGEDR 67 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~-------~~~-----~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (211)
..+++++|+++|.+++|||||+++|++. .+. . ...|+......++.++..+.++|||||+.
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 4578899999999999999999999862 110 0 00122222222344555899999999998
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEE-EEEeCCCccC
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL-VCCNKQDQTL 130 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~ 130 (211)
|..++ ...+..+|++++|+|+.+.. ..+..+.+..+.. .++|.+ +++||+|+.+
T Consensus 88 f~~~~-~~~~~~aD~~llVvda~~g~--~~qt~e~l~~~~~------~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 88 YVKNM-ITGAAQMDGAILVVSAADGP--MPQTREHILLARQ------VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHH-HhhhccCCEEEEEEECCCCC--chhHHHHHHHHHH------cCCCeEEEEEEecCCcc
Confidence 87754 34566799999999998732 2334444443322 227755 5799999974
No 229
>CHL00071 tufA elongation factor Tu
Probab=99.75 E-value=6.3e-17 Score=134.42 Aligned_cols=116 Identities=20% Similarity=0.204 Sum_probs=78.7
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccc-----------c--------cccccceeeEEEEecCceEEEEECCCchh
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYF-----------E--------SCTSLKENVGNFTYEKKNIKIVDLPGEDR 67 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~-----------~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (211)
.+++.++|+++|.+++|||||+++|++..-. . ...|+......++.++..+.++|||||..
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 3577899999999999999999999963110 0 00122222223444556899999999998
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCccCC
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQDQTLA 131 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~ 131 (211)
|...+ ...+..+|++++|+|+.... ..+..+.+..+.. .++| +++++||+|+.+.
T Consensus 88 ~~~~~-~~~~~~~D~~ilVvda~~g~--~~qt~~~~~~~~~------~g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 88 YVKNM-ITGAAQMDGAILVVSAADGP--MPQTKEHILLAKQ------VGVPNIVVFLNKEDQVDD 143 (409)
T ss_pred HHHHH-HHHHHhCCEEEEEEECCCCC--cHHHHHHHHHHHH------cCCCEEEEEEEccCCCCH
Confidence 87754 44566799999999997633 2334444433322 1277 7789999999753
No 230
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.75 E-value=7.8e-17 Score=135.77 Aligned_cols=116 Identities=19% Similarity=0.263 Sum_probs=77.4
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCc--ccc--------------c--------------------ccccceeeEEE
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSK--YFE--------------S--------------------CTSLKENVGNF 50 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~--~~~--------------~--------------------~~t~~~~~~~~ 50 (211)
..+..++|+++|..++|||||+++|+... ... + ..|+......+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 35778999999999999999999998432 110 0 01222333345
Q ss_pred EecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 51 TYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 51 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
+.++..+.++|||||+.|..++.. .+..+|++++|+|+.+... .+..+.+..... ... .|+++++||+|+.+
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~-~l~~aD~allVVDa~~G~~--~qt~~~~~l~~~---lg~--~~iIvvvNKiD~~~ 174 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMAT-GASTCDLAILLIDARKGVL--DQTRRHSFIATL---LGI--KHLVVAVNKMDLVD 174 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHH-HHhhCCEEEEEEECCCCcc--ccchHHHHHHHH---hCC--CceEEEEEeecccc
Confidence 566679999999999998775444 4578999999999976322 222222221111 111 47899999999974
No 231
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.75 E-value=3.6e-17 Score=135.69 Aligned_cols=112 Identities=19% Similarity=0.262 Sum_probs=74.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc--ccc--------------------------c--------ccccceeeEEEEecCc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK--YFE--------------------------S--------CTSLKENVGNFTYEKK 55 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~--~~~--------------------------~--------~~t~~~~~~~~~~~~~ 55 (211)
+||+++|+.++|||||+++|+... ... + ..|+......+++++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999997321 000 0 0123333444566667
Q ss_pred eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 56 NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 56 ~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
.+.++|||||+.|..++ ...+..+|++++|+|+..... .+..+.+..+.. +.. .++++++||+|+.+.
T Consensus 81 ~~~liDtPGh~~f~~~~-~~~~~~aD~allVVda~~G~~--~qt~~~~~~~~~---~~~--~~iivviNK~D~~~~ 148 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNM-ATGASTADLAVLLVDARKGVL--EQTRRHSYIASL---LGI--RHVVLAVNKMDLVDY 148 (406)
T ss_pred EEEEEeCCCHHHHHHHH-HHHHhhCCEEEEEEECCCCCc--cccHHHHHHHHH---cCC--CcEEEEEEecccccc
Confidence 99999999999997754 445678999999999976432 233333222221 111 468999999999753
No 232
>PLN03126 Elongation factor Tu; Provisional
Probab=99.74 E-value=1.1e-16 Score=134.49 Aligned_cols=114 Identities=20% Similarity=0.204 Sum_probs=79.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCc------cccc---------c----cccceeeEEEEecCceEEEEECCCchhh
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSK------YFES---------C----TSLKENVGNFTYEKKNIKIVDLPGEDRL 68 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~------~~~~---------~----~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 68 (211)
.++.++|+++|..++|||||+++|+... .... . .|+......++.++..+.++|+|||+.|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 5678899999999999999999999521 1100 0 1222222334556679999999999999
Q ss_pred hhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCccC
Q psy1914 69 RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQDQTL 130 (211)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 130 (211)
..++ ...+..+|++++|+|+.+.. ..+..+++..+.. .++| +++++||+|+.+
T Consensus 158 ~~~~-~~g~~~aD~ailVVda~~G~--~~qt~e~~~~~~~------~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 158 VKNM-ITGAAQMDGAILVVSGADGP--MPQTKEHILLAKQ------VGVPNMVVFLNKQDQVD 211 (478)
T ss_pred HHHH-HHHHhhCCEEEEEEECCCCC--cHHHHHHHHHHHH------cCCCeEEEEEecccccC
Confidence 8854 44556799999999998743 2445555544432 1277 778999999975
No 233
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.74 E-value=1.2e-16 Score=132.29 Aligned_cols=116 Identities=17% Similarity=0.170 Sum_probs=76.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCc-------c-----cc-------cccccceeeEEEEecCceEEEEECCCchh
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSK-------Y-----FE-------SCTSLKENVGNFTYEKKNIKIVDLPGEDR 67 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~-------~-----~~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (211)
..+++++|+++|..++|||||+++|++.. . .. ...|+......+..++..+.+||||||++
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence 35778999999999999999999997420 0 00 11222222222333445899999999999
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEE-EEEeCCCccCC
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL-VCCNKQDQTLA 131 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~ 131 (211)
|..++ ......+|++++|+|+.+.. ..+..+.+..+... ++|.+ +++||+|+.+.
T Consensus 88 f~~~~-~~~~~~~D~~ilVvda~~g~--~~qt~e~l~~~~~~------gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 88 YVKNM-ITGAAQMDGAILVVSATDGP--MPQTREHILLARQV------GVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHHHH-HHHHhhCCEEEEEEECCCCC--cHHHHHHHHHHHHc------CCCEEEEEEEecccCCH
Confidence 88754 33456789999999998732 23334444443321 26655 68999999753
No 234
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.74 E-value=1.6e-16 Score=132.91 Aligned_cols=117 Identities=20% Similarity=0.268 Sum_probs=79.2
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcC--ccc------------------------cc--------ccccceeeEEEEe
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYS--KYF------------------------ES--------CTSLKENVGNFTY 52 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~--~~~------------------------~~--------~~t~~~~~~~~~~ 52 (211)
..+++++|+++|+.++|||||+.+|+.. ... .+ ..|+......+++
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 3567899999999999999999999751 100 00 0133333344566
Q ss_pred cCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCch--hhH---HHHHHHHHHHHcCcCcCCCCCc-EEEEEeCC
Q psy1914 53 EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQ--KTL---RDVAESLYVILADPQVQSSRVN-ILVCCNKQ 126 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~ 126 (211)
++..++++|||||.+|..+ .......+|++++|+|+.+.. ..+ .++.+.+..+.. .++| +++++||+
T Consensus 83 ~~~~i~lIDtPGh~~f~~~-~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~------~gi~~iiv~vNKm 155 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKN-MITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT------LGVKQMIVCINKM 155 (446)
T ss_pred CCeEEEEEECCChHHHHHH-HHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH------cCCCeEEEEEEcc
Confidence 6779999999999999885 455567799999999997632 001 244444443322 1255 67899999
Q ss_pred CccC
Q psy1914 127 DQTL 130 (211)
Q Consensus 127 Dl~~ 130 (211)
|...
T Consensus 156 D~~~ 159 (446)
T PTZ00141 156 DDKT 159 (446)
T ss_pred cccc
Confidence 9643
No 235
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.74 E-value=2.1e-16 Score=120.47 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=73.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccc-----------c-----------cccceeeEEEEec---C--ceEEEEECCCc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFES-----------C-----------TSLKENVGNFTYE---K--KNIKIVDLPGE 65 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~-----------~-----------~t~~~~~~~~~~~---~--~~~~i~D~~G~ 65 (211)
+|+++|+.++|||||+++|+....... + .++......+.+. + ..+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999986432211 0 0111112222232 2 37899999999
Q ss_pred hhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 66 DRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 66 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
..+.. ....++..+|++++|+|+++... . ....++..... .++|+++|+||+|+.
T Consensus 82 ~~f~~-~~~~~~~~aD~~llVvD~~~~~~-~-~~~~~~~~~~~------~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMD-EVAAALRLSDGVVLVVDVVEGVT-S-NTERLIRHAIL------EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHH-HHHHHHHhCCEEEEEEECCCCCC-H-HHHHHHHHHHH------cCCCEEEEEECcccC
Confidence 99877 46777888999999999987543 2 22333333321 128999999999986
No 236
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.74 E-value=2e-16 Score=134.51 Aligned_cols=128 Identities=16% Similarity=0.220 Sum_probs=86.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc--Ccc---------------cccc--------cccceeeEEEEecCceEEEEECC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY--SKY---------------FESC--------TSLKENVGNFTYEKKNIKIVDLP 63 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~--~~~---------------~~~~--------~t~~~~~~~~~~~~~~~~i~D~~ 63 (211)
.+..+|+++|+.++|||||.++|+. +.. ..++ .++......+.+++..+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3567999999999999999999973 110 0111 12223344567778899999999
Q ss_pred CchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHH
Q psy1914 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQK 143 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~ 143 (211)
|+..|... ...+++.+|++|+|+|+++... ......+..... .++|+++++||+|+..... .+..+.+.+
T Consensus 88 G~~df~~~-~~~~l~~aD~aIlVvDa~~gv~--~~t~~l~~~~~~------~~iPiiv~iNK~D~~~a~~-~~~l~~i~~ 157 (526)
T PRK00741 88 GHEDFSED-TYRTLTAVDSALMVIDAAKGVE--PQTRKLMEVCRL------RDTPIFTFINKLDRDGREP-LELLDEIEE 157 (526)
T ss_pred CchhhHHH-HHHHHHHCCEEEEEEecCCCCC--HHHHHHHHHHHh------cCCCEEEEEECCcccccCH-HHHHHHHHH
Confidence 99999874 5567788999999999987432 233344333221 2399999999999976543 333444544
Q ss_pred HHH
Q psy1914 144 ELN 146 (211)
Q Consensus 144 ~~~ 146 (211)
.+.
T Consensus 158 ~l~ 160 (526)
T PRK00741 158 VLG 160 (526)
T ss_pred HhC
Confidence 443
No 237
>PRK00049 elongation factor Tu; Reviewed
Probab=99.73 E-value=2.1e-16 Score=130.68 Aligned_cols=115 Identities=19% Similarity=0.151 Sum_probs=77.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccc-------------------ccccccceeeEEEEecCceEEEEECCCchh
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYF-------------------ESCTSLKENVGNFTYEKKNIKIVDLPGEDR 67 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (211)
..+++++|+++|..++|||||+++|+..... ....|+......++.++..+.++||||+..
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 3577899999999999999999999862100 000122222222344555899999999998
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEE-EEEeCCCccC
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL-VCCNKQDQTL 130 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~ 130 (211)
|..++ ...+..+|++++|+|+.+... .+..+.+..+.. .++|.+ +++||+|+.+
T Consensus 88 f~~~~-~~~~~~aD~~llVVDa~~g~~--~qt~~~~~~~~~------~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 88 YVKNM-ITGAAQMDGAILVVSAADGPM--PQTREHILLARQ------VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHH-HhhhccCCEEEEEEECCCCCc--hHHHHHHHHHHH------cCCCEEEEEEeecCCcc
Confidence 87753 445678999999999976432 333444433322 127876 5899999964
No 238
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.72 E-value=2.8e-16 Score=131.40 Aligned_cols=116 Identities=22% Similarity=0.307 Sum_probs=78.9
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCc--cc------------------------ccc--------cccceeeEEEEe
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSK--YF------------------------ESC--------TSLKENVGNFTY 52 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~--~~------------------------~~~--------~t~~~~~~~~~~ 52 (211)
..+++++|+++|+.++|||||+.+|+... .. .+. .|+......++.
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 35778999999999999999999987411 00 000 123333334555
Q ss_pred cCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCch--hhH---HHHHHHHHHHHcCcCcCCCCC-cEEEEEeCC
Q psy1914 53 EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQ--KTL---RDVAESLYVILADPQVQSSRV-NILVCCNKQ 126 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~ 126 (211)
++..++++|+|||++|..+ ....+..+|++|+|+|+.+.. ..+ .++.+.+..... .++ ++++++||+
T Consensus 83 ~~~~i~liDtPGh~df~~~-~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~------~gi~~iIV~vNKm 155 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKN-MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT------LGVKQMICCCNKM 155 (447)
T ss_pred CCEEEEEEECCCHHHHHHH-HHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH------cCCCcEEEEEEcc
Confidence 6669999999999999985 566678899999999998621 001 244444443321 125 578899999
Q ss_pred Ccc
Q psy1914 127 DQT 129 (211)
Q Consensus 127 Dl~ 129 (211)
|+.
T Consensus 156 D~~ 158 (447)
T PLN00043 156 DAT 158 (447)
T ss_pred cCC
Confidence 986
No 239
>KOG3883|consensus
Probab=99.72 E-value=1.1e-15 Score=106.54 Aligned_cols=124 Identities=18% Similarity=0.268 Sum_probs=91.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc---ccccce-eeEEEEecCc---eEEEEECCCchhhhhhhHHHhhhcCC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES---CTSLKE-NVGNFTYEKK---NIKIVDLPGEDRLRNKFFDQYKSSAK 81 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~---~~t~~~-~~~~~~~~~~---~~~i~D~~G~~~~~~~~~~~~~~~~d 81 (211)
.+..||+++|..++|||+++.++..+.-... .||+.- ....++-+.. .+.++||.|......++..+|++-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 4568999999999999999999987664322 256543 3344554443 89999999987775558888999999
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS 135 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~ 135 (211)
++++|++..++++ |+.+...-..+-+.. .+..+|+++++||+|+.+++...
T Consensus 87 afVLVYs~~d~eS-f~rv~llKk~Idk~K--dKKEvpiVVLaN~rdr~~p~~vd 137 (198)
T KOG3883|consen 87 AFVLVYSPMDPES-FQRVELLKKEIDKHK--DKKEVPIVVLANKRDRAEPREVD 137 (198)
T ss_pred eEEEEecCCCHHH-HHHHHHHHHHHhhcc--ccccccEEEEechhhcccchhcC
Confidence 9999999999776 655543333332222 23459999999999998766544
No 240
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.72 E-value=1.6e-16 Score=138.65 Aligned_cols=116 Identities=18% Similarity=0.268 Sum_probs=77.4
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcc--cc--------------c--------------------ccccceeeEEE
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKY--FE--------------S--------------------CTSLKENVGNF 50 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~--~~--------------~--------------------~~t~~~~~~~~ 50 (211)
..++.++|+++|++++|||||+++|+...- .. + ..|+......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 356788999999999999999999985321 10 0 01222233445
Q ss_pred EecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 51 TYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 51 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
+.++..+.++||||++.|... .......+|++++|+|+.+... .+..+.+..+.. ... .|+++++||+|+.+
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~-~~~~~~~aD~~llVvda~~g~~--~~t~e~~~~~~~---~~~--~~iivvvNK~D~~~ 171 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRN-MVTGASTADLAIILVDARKGVL--TQTRRHSFIASL---LGI--RHVVLAVNKMDLVD 171 (632)
T ss_pred ccCCceEEEEECCChHHHHHH-HHHHHHhCCEEEEEEECCCCcc--ccCHHHHHHHHH---hCC--CeEEEEEEeccccc
Confidence 666678999999999988764 3345677999999999976332 222222222211 111 57889999999964
No 241
>KOG1145|consensus
Probab=99.72 E-value=3e-16 Score=129.37 Aligned_cols=158 Identities=22% Similarity=0.274 Sum_probs=113.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEE--Ee-cCceEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNF--TY-EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~--~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+.+-|-++|....|||||+.+|.+....... -.++..++.| ++ .|+.+++.|||||..|.. |...--+-+|+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~a-MRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSA-MRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHH-HHhccCccccEEE
Confidence 45678999999999999999999876653322 2222333333 22 456999999999999998 7777777799999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|+.+.|.- ..++.+-+..... .++|+++.+||+|.+++... .+..+|..
T Consensus 230 LVVAadDGV--mpQT~EaIkhAk~------A~VpiVvAinKiDkp~a~pe-kv~~eL~~--------------------- 279 (683)
T KOG1145|consen 230 LVVAADDGV--MPQTLEAIKHAKS------ANVPIVVAINKIDKPGANPE-KVKRELLS--------------------- 279 (683)
T ss_pred EEEEccCCc--cHhHHHHHHHHHh------cCCCEEEEEeccCCCCCCHH-HHHHHHHH---------------------
Confidence 999997733 4555555555432 34999999999998866543 33333321
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
.....++++.++.++++||++|+| ++.|.+.|.
T Consensus 280 ---------~gi~~E~~GGdVQvipiSAl~g~n---l~~L~eail 312 (683)
T KOG1145|consen 280 ---------QGIVVEDLGGDVQVIPISALTGEN---LDLLEEAIL 312 (683)
T ss_pred ---------cCccHHHcCCceeEEEeecccCCC---hHHHHHHHH
Confidence 112234567779999999999999 999887664
No 242
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.71 E-value=4.2e-16 Score=130.21 Aligned_cols=160 Identities=12% Similarity=0.141 Sum_probs=100.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcc---cccc---ccc--ceeeEE-------------EEec-------------
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKY---FESC---TSL--KENVGN-------------FTYE------------- 53 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~---~~~~---~t~--~~~~~~-------------~~~~------------- 53 (211)
+..+++|+++|+.+.|||||+.+|++-.. .+.. .|+ ++.... ..+.
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 46788999999999999999999996432 1111 121 111000 0000
Q ss_pred -----CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 54 -----KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 54 -----~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
...+.++|+|||+.|..+++ .....+|++++|+|+.++.. ..+..+.+..... +.- .|+++|+||+|+
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~-~g~~~~D~alLVVda~~g~~-~~qT~ehl~i~~~---lgi--~~iIVvlNKiDl 183 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATML-NGAAVMDAALLLIAANESCP-QPQTSEHLAAVEI---MKL--KHIIILQNKIDL 183 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHH-HHHhhCCEEEEEEECCCCcc-chhhHHHHHHHHH---cCC--CcEEEEEecccc
Confidence 12689999999999988544 44567999999999986311 2334444432221 111 468999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHH
Q psy1914 129 TLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWM 208 (211)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i 208 (211)
.+.....+..+++.+.+... ....++++++||++|+| +++|++.|
T Consensus 184 v~~~~~~~~~~ei~~~l~~~--------------------------------~~~~~~iipVSA~~G~n---I~~Ll~~L 228 (460)
T PTZ00327 184 VKEAQAQDQYEEIRNFVKGT--------------------------------IADNAPIIPISAQLKYN---IDVVLEYI 228 (460)
T ss_pred cCHHHHHHHHHHHHHHHHhh--------------------------------ccCCCeEEEeeCCCCCC---HHHHHHHH
Confidence 75433333333333222110 01227889999999999 99999998
Q ss_pred h
Q psy1914 209 V 209 (211)
Q Consensus 209 ~ 209 (211)
.
T Consensus 229 ~ 229 (460)
T PTZ00327 229 C 229 (460)
T ss_pred H
Confidence 7
No 243
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.71 E-value=1.5e-16 Score=121.54 Aligned_cols=132 Identities=17% Similarity=0.202 Sum_probs=84.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc----cccceeeEEEEecCc-eEEEEECCCchhhhhh----hHHHhhhcCCEE
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC----TSLKENVGNFTYEKK-NIKIVDLPGEDRLRNK----FFDQYKSSAKGI 83 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~----~~~~~~~~~d~i 83 (211)
||+++|+.+|||||+.+.+..+..+... +|+......+.+.+. .+++||+||+..+... -....++++.++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 7999999999999999999976554333 667667666765555 9999999999654331 246678999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHH
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~ 146 (211)
|||+|+.+.+ +.+...++...+.......+++.+.++++|+|+.......+..+.+.+++.
T Consensus 81 IyV~D~qs~~--~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~ 141 (232)
T PF04670_consen 81 IYVFDAQSDD--YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIR 141 (232)
T ss_dssp EEEEETT-ST--CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHH
T ss_pred EEEEEccccc--HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHH
Confidence 9999998322 333444444433322222356899999999999876666655555555444
No 244
>PRK13351 elongation factor G; Reviewed
Probab=99.71 E-value=4.7e-16 Score=137.01 Aligned_cols=128 Identities=16% Similarity=0.170 Sum_probs=90.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc-------------ccc--------cccccceeeEEEEecCceEEEEECCCchh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSK-------------YFE--------SCTSLKENVGNFTYEKKNIKIVDLPGEDR 67 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~-------------~~~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (211)
....+|+++|..++|||||+++|+... ... ..+|+......+.+++..+++|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 345799999999999999999998521 101 11344455566778888999999999999
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHH
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~ 146 (211)
+.. .+..+++.+|++++|+|+++... .+....|..+.. .++|+++|+||+|+.... .....+.+.+.+.
T Consensus 86 f~~-~~~~~l~~aD~~ilVvd~~~~~~--~~~~~~~~~~~~------~~~p~iiviNK~D~~~~~-~~~~~~~i~~~l~ 154 (687)
T PRK13351 86 FTG-EVERSLRVLDGAVVVFDAVTGVQ--PQTETVWRQADR------YGIPRLIFINKMDRVGAD-LFKVLEDIEERFG 154 (687)
T ss_pred HHH-HHHHHHHhCCEEEEEEeCCCCCC--HHHHHHHHHHHh------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHHC
Confidence 888 57788899999999999987543 223333433322 238999999999998653 3333444444443
No 245
>PLN03127 Elongation factor Tu; Provisional
Probab=99.69 E-value=1.3e-15 Score=127.44 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=76.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC------ccc------c-------cccccceeeEEEEecCceEEEEECCCchhh
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYS------KYF------E-------SCTSLKENVGNFTYEKKNIKIVDLPGEDRL 68 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~------~~~------~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 68 (211)
.+++++|+++|..++|||||+++|.+. ... . ...|+......++.++..+.++||||++.|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 567899999999999999999999721 100 0 011232223334445568999999999988
Q ss_pred hhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCccC
Q psy1914 69 RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQDQTL 130 (211)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 130 (211)
..++.. ....+|++++|+|+.+.. ..+..+.+..+.. .++| +++++||+|+.+
T Consensus 138 ~~~~~~-g~~~aD~allVVda~~g~--~~qt~e~l~~~~~------~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 138 VKNMIT-GAAQMDGGILVVSAPDGP--MPQTKEHILLARQ------VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHHHH-HHhhCCEEEEEEECCCCC--chhHHHHHHHHHH------cCCCeEEEEEEeeccCC
Confidence 775444 345699999999997643 2333333333322 2278 578899999974
No 246
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=3.6e-16 Score=125.42 Aligned_cols=167 Identities=18% Similarity=0.239 Sum_probs=102.1
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCc--ccc--------------------cc------------cccceeeEEEEe
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSK--YFE--------------------SC------------TSLKENVGNFTY 52 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~--~~~--------------------~~------------~t~~~~~~~~~~ 52 (211)
..+++++++++|+.++|||||+.+|+-.- +.+ .+ .|+......++.
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 35789999999999999999999997411 100 00 122222333444
Q ss_pred cCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCch--hh---HHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCC
Q psy1914 53 EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQ--KT---LRDVAESLYVILADPQVQSSRVNILVCCNKQD 127 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 127 (211)
+...++++|+|||..|-.++... ...||+.|+|+|+++.+ .. -.+.++...-... +.- ..+++++||+|
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItG-asqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t---lGi--~~lIVavNKMD 156 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITG-ASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART---LGI--KQLIVAVNKMD 156 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcc-hhhccEEEEEEECCCCccccccccCCchhHHHHHHHh---cCC--ceEEEEEEccc
Confidence 45589999999999998875554 45599999999998752 11 1223332222221 112 45899999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHH
Q psy1914 128 QTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDW 207 (211)
Q Consensus 128 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~ 207 (211)
+.+ ..++..+.+.+++..+ .+..... +.+++|++|||.+|+|..+..+..+|
T Consensus 157 ~v~--wde~rf~ei~~~v~~l--~k~~G~~------------------------~~~v~FIPiSg~~G~Nl~~~s~~~pW 208 (428)
T COG5256 157 LVS--WDEERFEEIVSEVSKL--LKMVGYN------------------------PKDVPFIPISGFKGDNLTKKSENMPW 208 (428)
T ss_pred ccc--cCHHHHHHHHHHHHHH--HHHcCCC------------------------ccCCeEEecccccCCcccccCcCCcC
Confidence 986 2232333333333321 1111100 12388999999999995555555555
No 247
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.69 E-value=2e-15 Score=132.93 Aligned_cols=126 Identities=18% Similarity=0.169 Sum_probs=87.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc--c-----cc--------------cccccceeeEEEEecCceEEEEECCCchhhh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK--Y-----FE--------------SCTSLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~--~-----~~--------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
-.+|+++|..|+|||||+++|+... . .. ...|+......+.+++..+++|||||+..+.
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT 89 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence 3589999999999999999997311 1 00 0123334455678888899999999999887
Q ss_pred hhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHH
Q psy1914 70 NKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 70 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~ 146 (211)
. .+..+++.+|++++|+|+.+... .+....+..+.. .++|+++++||+|+.... .....+.+...+.
T Consensus 90 ~-~~~~~l~~~D~~ilVvda~~g~~--~~~~~~~~~~~~------~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l~ 156 (689)
T TIGR00484 90 V-EVERSLRVLDGAVAVLDAVGGVQ--PQSETVWRQANR------YEVPRIAFVNKMDKTGAN-FLRVVNQIKQRLG 156 (689)
T ss_pred H-HHHHHHHHhCEEEEEEeCCCCCC--hhHHHHHHHHHH------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhC
Confidence 7 47778889999999999987433 223333333221 238999999999998654 3444445554443
No 248
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.69 E-value=1.5e-15 Score=129.17 Aligned_cols=128 Identities=14% Similarity=0.230 Sum_probs=86.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc--Cccc---------------ccc--------cccceeeEEEEecCceEEEEECC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY--SKYF---------------ESC--------TSLKENVGNFTYEKKNIKIVDLP 63 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~--~~~~---------------~~~--------~t~~~~~~~~~~~~~~~~i~D~~ 63 (211)
.+..+|+++|++++|||||+++|+. +... .++ .++......+.+++..+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999863 1110 000 11222334467777899999999
Q ss_pred CchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHH
Q psy1914 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQK 143 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~ 143 (211)
|+..|... ...++..+|++|+|+|+++... .+...++. .+.. .++|+++++||+|+... ...++.+.++.
T Consensus 89 G~~df~~~-~~~~l~~aD~aIlVvDa~~gv~--~~t~~l~~-~~~~-----~~~PiivviNKiD~~~~-~~~~ll~~i~~ 158 (527)
T TIGR00503 89 GHEDFSED-TYRTLTAVDNCLMVIDAAKGVE--TRTRKLME-VTRL-----RDTPIFTFMNKLDRDIR-DPLELLDEVEN 158 (527)
T ss_pred ChhhHHHH-HHHHHHhCCEEEEEEECCCCCC--HHHHHHHH-HHHh-----cCCCEEEEEECccccCC-CHHHHHHHHHH
Confidence 99988874 4556788999999999987322 22333333 3322 23899999999998754 34445555555
Q ss_pred HHH
Q psy1914 144 ELN 146 (211)
Q Consensus 144 ~~~ 146 (211)
.+.
T Consensus 159 ~l~ 161 (527)
T TIGR00503 159 ELK 161 (527)
T ss_pred HhC
Confidence 544
No 249
>KOG1707|consensus
Probab=99.69 E-value=2.1e-16 Score=131.01 Aligned_cols=126 Identities=15% Similarity=0.145 Sum_probs=94.6
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeE---EEEecCceEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVG---NFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+.+||+++|..|+||||||.++...+++...|..-+.+. .++-+.....++|++....-+. ....-++.++++
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~-~l~~EirkA~vi 83 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRL-CLRKEIRKADVI 83 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhH-HHHHHHhhcCEE
Confidence 356789999999999999999999999999877754332221 1222333689999997766555 345567789999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS 134 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 134 (211)
.++++++++.+ ++.+..+|...++...-...++|+|+|+||+|+......
T Consensus 84 ~lvyavd~~~T-~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 84 CLVYAVDDEST-VDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred EEEEecCChHH-hhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 99999988554 888877777777664434456999999999999866544
No 250
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.69 E-value=4.2e-16 Score=122.21 Aligned_cols=153 Identities=21% Similarity=0.283 Sum_probs=100.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecCc-eEEEEECCCchh-------hhhhhHHHhhhcCC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEKK-NIKIVDLPGEDR-------LRNKFFDQYKSSAK 81 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~-~~~i~D~~G~~~-------~~~~~~~~~~~~~d 81 (211)
-|.++|.||+|||||++.++..+. ...|| |..++.+.+...+. .+.+-|.||.-. .-..+.. .+.++.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLr-HIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLR-HIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHH-HHHhhh
Confidence 468999999999999999998775 56674 66678888876444 799999999732 1111233 345699
Q ss_pred EEEEEEeCCCc-----hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC-HHHHHHHHHHHHHHHhhhcccc
Q psy1914 82 GIVYVLDSSTV-----QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS-SSVVKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 82 ~ii~v~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 155 (211)
++++|+|++.. ...+..+..++... ...+.. +|.++|+||+|+....+ .+...+.+.+..
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y--~~~L~~--K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~---------- 305 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKY--SPKLAE--KPRIVVLNKIDLPLDEEELEELKKALAEAL---------- 305 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHh--hHHhcc--CceEEEEeccCCCcCHHHHHHHHHHHHHhc----------
Confidence 99999999852 22344444444333 123444 89999999999764433 222222222111
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+...+. +||.|++| +++|.+.+.+
T Consensus 306 --------------------------~~~~~~~-ISa~t~~g---~~~L~~~~~~ 330 (369)
T COG0536 306 --------------------------GWEVFYL-ISALTREG---LDELLRALAE 330 (369)
T ss_pred --------------------------CCCccee-eehhcccC---HHHHHHHHHH
Confidence 1222223 99999999 9999877654
No 251
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.69 E-value=1.5e-15 Score=104.77 Aligned_cols=103 Identities=28% Similarity=0.392 Sum_probs=69.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcc--cccc--cccceeeEEEEecCceEEEEECCCchh---------hhhhhHHHhhhc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKY--FESC--TSLKENVGNFTYEKKNIKIVDLPGEDR---------LRNKFFDQYKSS 79 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~--~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~~~ 79 (211)
||+++|.+|+|||||+|+|++.+. .... .|.......+.+++..+.++||||... ....+... +..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~-~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQ-ISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHH-HCT
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHH-HHH
Confidence 699999999999999999998543 2222 344444566778888999999999732 11113333 377
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeC
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNK 125 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 125 (211)
+|++++|+|++++. .+....+.+.++ .+.|+++|+||
T Consensus 80 ~d~ii~vv~~~~~~---~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPI---TEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHS---HHHHHHHHHHHH------TTSEEEEEEES
T ss_pred CCEEEEEEECCCCC---CHHHHHHHHHHh------cCCCEEEEEcC
Confidence 99999999987732 222222222222 22899999998
No 252
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.68 E-value=2.3e-15 Score=113.32 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=66.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccc-cccccce-----eeEEEEec-CceEEEEECCCchhhhh---hhH-HHhhhc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFE-SCTSLKE-----NVGNFTYE-KKNIKIVDLPGEDRLRN---KFF-DQYKSS 79 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~t~~~-----~~~~~~~~-~~~~~i~D~~G~~~~~~---~~~-~~~~~~ 79 (211)
++||+++|.+|+|||||+|+|++..... ..++++. ....+... ...+.+|||||...... .+. ...+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 4789999999999999999999855432 1122221 11112111 23789999999853221 011 112456
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
+|.++++.|. . +.+....+...+... +.|+++|+||+|+..
T Consensus 81 ~d~~l~v~~~-~----~~~~d~~~~~~l~~~-----~~~~ilV~nK~D~~~ 121 (197)
T cd04104 81 YDFFIIISST-R----FSSNDVKLAKAIQCM-----GKKFYFVRTKVDRDL 121 (197)
T ss_pred cCEEEEEeCC-C----CCHHHHHHHHHHHHh-----CCCEEEEEecccchh
Confidence 8988887543 2 233333333343321 279999999999953
No 253
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.67 E-value=2.2e-15 Score=120.59 Aligned_cols=76 Identities=18% Similarity=0.294 Sum_probs=52.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEe---------------------cC---ceEEEEECCCc-
Q psy1914 14 VLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTY---------------------EK---KNIKIVDLPGE- 65 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~---------------------~~---~~~~i~D~~G~- 65 (211)
|+++|.+|||||||+|+|++... ...+| |..++.+...+ ++ ..+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998764 23332 33444443322 22 27999999998
Q ss_pred ---hhhhhhhHHH---hhhcCCEEEEEEeCC
Q psy1914 66 ---DRLRNKFFDQ---YKSSAKGIVYVLDSS 90 (211)
Q Consensus 66 ---~~~~~~~~~~---~~~~~d~ii~v~d~~ 90 (211)
.+... +... .++++|++++|+|++
T Consensus 81 ~ga~~~~g-lg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKG-LGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhh-HHHHHHHHHHHCCEEEEEEeCC
Confidence 33332 2222 478899999999997
No 254
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.67 E-value=1.7e-15 Score=115.57 Aligned_cols=108 Identities=21% Similarity=0.204 Sum_probs=75.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc--cccc-----------------ccccceeeEEEEec----------CceEEEEECC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSK--YFES-----------------CTSLKENVGNFTYE----------KKNIKIVDLP 63 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~--~~~~-----------------~~t~~~~~~~~~~~----------~~~~~i~D~~ 63 (211)
+|+++|..++|||||+.+|+... .... ..|+......+.++ +..+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 68999999999999999998532 1100 01222122223333 3478999999
Q ss_pred CchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
|+..|.. ....+++.+|++++|+|+.+... .+....+..... .++|+++|+||+|+.
T Consensus 82 G~~~f~~-~~~~~l~~aD~~ilVvD~~~g~~--~~t~~~l~~~~~------~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSS-EVTAALRLCDGALVVVDAVEGVC--VQTETVLRQALK------ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHH-HHHHHHHhcCeeEEEEECCCCCC--HHHHHHHHHHHH------cCCCEEEEEECCCcc
Confidence 9999988 46777888999999999987443 334444444432 228999999999986
No 255
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.66 E-value=6.7e-15 Score=110.76 Aligned_cols=118 Identities=13% Similarity=0.185 Sum_probs=79.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccc-----ccccceeeEEEEecCceEEEEECCCchhh-------hhhhH---HHh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFES-----CTSLKENVGNFTYEKKNIKIVDLPGEDRL-------RNKFF---DQY 76 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~---~~~ 76 (211)
++|+++|.+|||||||+|.+++.+.... ..|.........+++..+.++||||.... ...+. ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999998764221 23444555666778889999999997432 11111 112
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 133 (211)
.++++++++|+|+.........+.+++........ -.++++|+|++|......
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~----~~~~ivv~T~~d~l~~~~ 133 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKV----LDHTIVLFTRGDDLEGGT 133 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHh----HhcEEEEEECccccCCCc
Confidence 35689999999987643334445555555443211 147899999999876543
No 256
>PRK12739 elongation factor G; Reviewed
Probab=99.66 E-value=9.1e-15 Score=128.77 Aligned_cols=127 Identities=18% Similarity=0.172 Sum_probs=88.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC--cc------c-------------ccccccceeeEEEEecCceEEEEECCCchhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS--KY------F-------------ESCTSLKENVGNFTYEKKNIKIVDLPGEDRL 68 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~--~~------~-------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 68 (211)
+-.+|+++|..++|||||+++|+.. .. . ....|+......+.+++..++++||||+..+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 3457999999999999999999742 10 0 1112444445567788889999999999988
Q ss_pred hhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHH
Q psy1914 69 RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~ 146 (211)
..+ +...++.+|++++|+|+.+... .+....+..... .++|+++++||+|+.+.. .....+.+.+.+.
T Consensus 87 ~~e-~~~al~~~D~~ilVvDa~~g~~--~qt~~i~~~~~~------~~~p~iv~iNK~D~~~~~-~~~~~~~i~~~l~ 154 (691)
T PRK12739 87 TIE-VERSLRVLDGAVAVFDAVSGVE--PQSETVWRQADK------YGVPRIVFVNKMDRIGAD-FFRSVEQIKDRLG 154 (691)
T ss_pred HHH-HHHHHHHhCeEEEEEeCCCCCC--HHHHHHHHHHHH------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhC
Confidence 874 7777888999999999987432 223333333322 238999999999998643 4444455554443
No 257
>PRK00007 elongation factor G; Reviewed
Probab=99.65 E-value=1.4e-14 Score=127.58 Aligned_cols=127 Identities=17% Similarity=0.172 Sum_probs=87.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc--Ccc------c-------------ccccccceeeEEEEecCceEEEEECCCchhhh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY--SKY------F-------------ESCTSLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~--~~~------~-------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
-.+|+++|..++|||||+++|+. +.. . ....|+......+.+++..++++||||+..|.
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~ 89 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFT 89 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHH
Confidence 45899999999999999999973 111 0 00123333445577888899999999999887
Q ss_pred hhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHH
Q psy1914 70 NKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNL 147 (211)
Q Consensus 70 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~ 147 (211)
.+ ....+..+|++++|+|+..... .+....+..+.. .++|+++++||+|+.+.. .....+.+.+.++.
T Consensus 90 ~e-v~~al~~~D~~vlVvda~~g~~--~qt~~~~~~~~~------~~~p~iv~vNK~D~~~~~-~~~~~~~i~~~l~~ 157 (693)
T PRK00007 90 IE-VERSLRVLDGAVAVFDAVGGVE--PQSETVWRQADK------YKVPRIAFVNKMDRTGAD-FYRVVEQIKDRLGA 157 (693)
T ss_pred HH-HHHHHHHcCEEEEEEECCCCcc--hhhHHHHHHHHH------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCC
Confidence 74 5556778999999999976432 333444444332 238999999999998654 44445555555544
No 258
>KOG0462|consensus
Probab=99.65 E-value=4.6e-15 Score=122.39 Aligned_cols=152 Identities=17% Similarity=0.243 Sum_probs=107.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc--cc----------------ccccccceeeEEEEecC---ceEEEEECCCchhhh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK--YF----------------ESCTSLKENVGNFTYEK---KNIKIVDLPGEDRLR 69 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~--~~----------------~~~~t~~~~~~~~~~~~---~~~~i~D~~G~~~~~ 69 (211)
-.++.|+-....|||||..+|+.-. .. +...|+......+.|.+ ..++++|||||-+|.
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 3478999999999999999998421 00 01134444555666666 489999999999999
Q ss_pred hhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHh
Q psy1914 70 NKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVR 149 (211)
Q Consensus 70 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~ 149 (211)
.+ ....+..|+++|+|+|++.... .++..-+...+.. +..+|.|+||+|++.++ .+.+..++.+.+..
T Consensus 140 ~E-VsRslaac~G~lLvVDA~qGvq--AQT~anf~lAfe~------~L~iIpVlNKIDlp~ad-pe~V~~q~~~lF~~-- 207 (650)
T KOG0462|consen 140 GE-VSRSLAACDGALLVVDASQGVQ--AQTVANFYLAFEA------GLAIIPVLNKIDLPSAD-PERVENQLFELFDI-- 207 (650)
T ss_pred ce-ehehhhhcCceEEEEEcCcCch--HHHHHHHHHHHHc------CCeEEEeeeccCCCCCC-HHHHHHHHHHHhcC--
Confidence 86 6667778999999999987543 3343333444332 27899999999998765 44455555543331
Q ss_pred hhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 150 RTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..-+++.+|||+|-| ++++++.|.+
T Consensus 208 ---------------------------------~~~~~i~vSAK~G~~---v~~lL~AII~ 232 (650)
T KOG0462|consen 208 ---------------------------------PPAEVIYVSAKTGLN---VEELLEAIIR 232 (650)
T ss_pred ---------------------------------CccceEEEEeccCcc---HHHHHHHHHh
Confidence 113668899999999 9999988764
No 259
>KOG0096|consensus
Probab=99.65 E-value=3.3e-16 Score=112.80 Aligned_cols=153 Identities=14% Similarity=0.228 Sum_probs=115.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEEe---cCc-eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFTY---EKK-NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~---~~~-~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..++++++|..|.|||+++++...+.|..++ +|++.......+ .+. .+.+|||+|++.+.. +...|+-+..+.|
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gg-lrdgyyI~~qcAi 87 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGG-LRDGYYIQGQCAI 87 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecc-cccccEEecceeE
Confidence 4679999999999999999999999998888 677777666433 232 899999999999988 5667777799999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
++||+...-. +..+.+|..++.+.. .++|+++.+||.|............ ..
T Consensus 88 imFdVtsr~t-~~n~~rwhrd~~rv~----~NiPiv~cGNKvDi~~r~~k~k~v~----------~~------------- 139 (216)
T KOG0096|consen 88 IMFDVTSRFT-YKNVPRWHRDLVRVR----ENIPIVLCGNKVDIKARKVKAKPVS----------FH------------- 139 (216)
T ss_pred EEeeeeehhh-hhcchHHHHHHHHHh----cCCCeeeeccceeccccccccccce----------ee-------------
Confidence 9999987544 677778877776532 2399999999999864431110000 00
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+..+++.||++.-+ .+.-+.|+.+
T Consensus 140 ----------------rkknl~y~~iSaksn~N---fekPFl~Lar 166 (216)
T KOG0096|consen 140 ----------------RKKNLQYYEISAKSNYN---FERPFLWLAR 166 (216)
T ss_pred ----------------ecccceeEEeecccccc---cccchHHHhh
Confidence 12347889999999988 8888888754
No 260
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.65 E-value=1.7e-14 Score=116.87 Aligned_cols=86 Identities=14% Similarity=0.177 Sum_probs=73.2
Q ss_pred cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCch---------hhHHHHHHHHHHHHcCcC
Q psy1914 41 TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQ---------KTLRDVAESLYVILADPQ 111 (211)
Q Consensus 41 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~~~~~~~~~~ 111 (211)
||+|.....+.+++..+.+||++|+...+. .|.+++.+++++|+|+|+++.+ +.+.++...+..++..+.
T Consensus 170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~-kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~ 248 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQRSERK-KWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW 248 (342)
T ss_pred CccceEEEEEEECCeEEEEEecCCchhhhh-hHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence 345555666777777899999999999998 6999999999999999999742 358888999999998877
Q ss_pred cCCCCCcEEEEEeCCCcc
Q psy1914 112 VQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 112 ~~~~~~p~iiv~nK~Dl~ 129 (211)
+.+ +|+++++||.|+.
T Consensus 249 ~~~--~piil~~NK~D~~ 264 (342)
T smart00275 249 FAN--TSIILFLNKIDLF 264 (342)
T ss_pred ccC--CcEEEEEecHHhH
Confidence 777 9999999999985
No 261
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.64 E-value=1.3e-14 Score=116.64 Aligned_cols=86 Identities=15% Similarity=0.213 Sum_probs=73.5
Q ss_pred cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCch---------hhHHHHHHHHHHHHcCcC
Q psy1914 41 TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQ---------KTLRDVAESLYVILADPQ 111 (211)
Q Consensus 41 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~~~~~~~~~~ 111 (211)
||+|.....+.+++..+.+||++|+...+. .|.+++.+++++|+|+|.++.. ..+.++...+..++.++.
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~-kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSERK-KWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcccch-hHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 455666666777777999999999999999 6999999999999999998742 458889999999998877
Q ss_pred cCCCCCcEEEEEeCCCcc
Q psy1914 112 VQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 112 ~~~~~~p~iiv~nK~Dl~ 129 (211)
+.+ +|+++++||.|+.
T Consensus 226 ~~~--~pill~~NK~D~f 241 (317)
T cd00066 226 FAN--TSIILFLNKKDLF 241 (317)
T ss_pred ccC--CCEEEEccChHHH
Confidence 776 9999999999975
No 262
>KOG1673|consensus
Probab=99.62 E-value=8.9e-15 Score=102.22 Aligned_cols=158 Identities=16% Similarity=0.181 Sum_probs=115.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
-.+||.++|++..|||||+-.+.++.+.+.+ .+.|.+.. ++.+.+. .+.+||++|++++.. +.+-...++-+++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n-~lPiac~dsvaIl 97 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFIN-MLPIACKDSVAIL 97 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhc-cCceeecCcEEEE
Confidence 3579999999999999999999998886544 46666544 3555665 789999999999888 6777778899999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
++||.+.+.. +..+.+|+.....- .+.-+| ++|++|-|+.-.-.++ .+..+.+.......
T Consensus 98 FmFDLt~r~T-LnSi~~WY~QAr~~---NktAiP-ilvGTKyD~fi~lp~e-~Q~~I~~qar~YAk-------------- 157 (205)
T KOG1673|consen 98 FMFDLTRRST-LNSIKEWYRQARGL---NKTAIP-ILVGTKYDLFIDLPPE-LQETISRQARKYAK-------------- 157 (205)
T ss_pred EEEecCchHH-HHHHHHHHHHHhcc---CCccce-EEeccchHhhhcCCHH-HHHHHHHHHHHHHH--------------
Confidence 9999998665 88889998887653 333366 5679999986544332 22223222221111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHH
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWM 208 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i 208 (211)
..+.+.+.||+-..-+ +..+++++
T Consensus 158 -----------------~mnAsL~F~Sts~sIN---v~KIFK~v 181 (205)
T KOG1673|consen 158 -----------------VMNASLFFCSTSHSIN---VQKIFKIV 181 (205)
T ss_pred -----------------HhCCcEEEeecccccc---HHHHHHHH
Confidence 1225778899999999 99998875
No 263
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=1.3e-14 Score=110.94 Aligned_cols=164 Identities=16% Similarity=0.244 Sum_probs=106.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc---cccceeeE-EEEecCceEEEEECCCchh-------hhhhhHHHh
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC---TSLKENVG-NFTYEKKNIKIVDLPGEDR-------LRNKFFDQY 76 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~---~t~~~~~~-~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~ 76 (211)
...+++++++|.+|+|||||+|+|..+...+.. .++.+... ...+++..+.+||+||..+ ++. ....+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~-~~~d~ 114 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQ-LYRDY 114 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHH-HHHHH
Confidence 457889999999999999999999975543222 22222222 2456667999999999854 555 46667
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC---------CCHHHHHHHHHHHHHH
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA---------KSSSVVKTLLQKELNL 147 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~---------~~~~~~~~~l~~~~~~ 147 (211)
++..|.+++++|+.|+. +.--..++.+++... .+.++++++|.+|.... .....+.+.++.+.+.
T Consensus 115 l~~~DLvL~l~~~~dra--L~~d~~f~~dVi~~~----~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~ 188 (296)
T COG3596 115 LPKLDLVLWLIKADDRA--LGTDEDFLRDVIILG----LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEA 188 (296)
T ss_pred hhhccEEEEeccCCCcc--ccCCHHHHHHHHHhc----cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHH
Confidence 88899999999998854 333344555554321 22789999999998644 1223344444444432
Q ss_pred HhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 148 VRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....-- ..-+++.+|+..+-| ++++...|.+
T Consensus 189 ~~~~~q-----------------------------~V~pV~~~~~r~~wg---l~~l~~ali~ 219 (296)
T COG3596 189 LGRLFQ-----------------------------EVKPVVAVSGRLPWG---LKELVRALIT 219 (296)
T ss_pred HHHHHh-----------------------------hcCCeEEeccccCcc---HHHHHHHHHH
Confidence 211110 013556677788888 9998877654
No 264
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.61 E-value=1.1e-14 Score=118.55 Aligned_cols=151 Identities=17% Similarity=0.258 Sum_probs=103.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc-------cc----c-------cccccceeeEEEEecC---c--eEEEEECCCchhh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK-------YF----E-------SCTSLKENVGNFTYEK---K--NIKIVDLPGEDRL 68 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~-------~~----~-------~~~t~~~~~~~~~~~~---~--~~~i~D~~G~~~~ 68 (211)
.++.|+-+-..|||||..|++... +. . ...|+..+...+.|.. . .++++|||||-.|
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 467888999999999999998522 10 0 1123333334444432 2 8999999999999
Q ss_pred hhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHH
Q psy1914 69 RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLV 148 (211)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 148 (211)
..+ ....+..|.+.++|+|++..-. . ++..-.+..+. .+.-++-|+||+||+.+ +++.+..+++..+..
T Consensus 90 sYE-VSRSLAACEGalLvVDAsQGve-A-QTlAN~YlAle------~~LeIiPViNKIDLP~A-dpervk~eIe~~iGi- 158 (603)
T COG0481 90 SYE-VSRSLAACEGALLVVDASQGVE-A-QTLANVYLALE------NNLEIIPVLNKIDLPAA-DPERVKQEIEDIIGI- 158 (603)
T ss_pred EEE-ehhhHhhCCCcEEEEECccchH-H-HHHHHHHHHHH------cCcEEEEeeecccCCCC-CHHHHHHHHHHHhCC-
Confidence 886 5556677999999999987543 2 22222233332 22789999999999855 455566666654441
Q ss_pred hhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 149 RRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....+.||||||.| |+++++.|.+
T Consensus 159 ----------------------------------d~~dav~~SAKtG~g---I~~iLe~Iv~ 183 (603)
T COG0481 159 ----------------------------------DASDAVLVSAKTGIG---IEDVLEAIVE 183 (603)
T ss_pred ----------------------------------CcchheeEecccCCC---HHHHHHHHHh
Confidence 012447799999999 9999998864
No 265
>KOG1191|consensus
Probab=99.60 E-value=9.1e-15 Score=119.43 Aligned_cols=122 Identities=18% Similarity=0.130 Sum_probs=78.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc--c--ccceeeEEEEecCceEEEEECCCchh--------hhhhhHHHh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC--T--SLKENVGNFTYEKKNIKIVDLPGEDR--------LRNKFFDQY 76 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~--t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 76 (211)
+.+++|+++|+||+|||||+|+|.+.+..-.. | |-+.-...++++|.++.+.||+|..+ ..-.....-
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 56799999999999999999999998753222 2 22223344789999999999999854 111111223
Q ss_pred hhcCCEEEEEEeC--CCchhhHHHHHHHHHHHHc---CcCcCCCCCcEEEEEeCCCccCC
Q psy1914 77 KSSAKGIVYVLDS--STVQKTLRDVAESLYVILA---DPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 77 ~~~~d~ii~v~d~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
...+|++++|+|+ ++..+.. .+.+.+...-. .......+.|++++.||+|+...
T Consensus 346 ~~~advi~~vvda~~~~t~sd~-~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDL-KIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HhhcCEEEEEecccccccccch-HHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 4569999999999 3333212 22222222211 11111123789999999999755
No 266
>KOG4423|consensus
Probab=99.60 E-value=8.3e-17 Score=115.57 Aligned_cols=159 Identities=18% Similarity=0.217 Sum_probs=117.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEecCc---eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYEKK---NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~~~---~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
++++++|.-++|||++++++....+...+ .|++. ....+.+++. ++.+||..|++++.. +..-|++.+.+..+
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~-mtrVyykea~~~~i 104 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGN-MTRVYYKEAHGAFI 104 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcc-eEEEEecCCcceEE
Confidence 68999999999999999999998888877 45554 3344677776 788999999999998 88889999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcC-CCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQ-SSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|||.+.+.. ++.+..|..++-....+. +..+|+++..||||.......+. -.++.+.-+.
T Consensus 105 Vfdvt~s~t-fe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~-~~~~d~f~ke----------------- 165 (229)
T KOG4423|consen 105 VFDVTRSLT-FEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEA-TRQFDNFKKE----------------- 165 (229)
T ss_pred EEEcccccc-ccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhh-HHHHHHHHhc-----------------
Confidence 999998554 888888877775443322 34589999999999864432221 1112211110
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..-...+++|+|...+ ++|..+.+++
T Consensus 166 -----------------ngf~gwtets~Kenkn---i~Ea~r~lVe 191 (229)
T KOG4423|consen 166 -----------------NGFEGWTETSAKENKN---IPEAQRELVE 191 (229)
T ss_pred -----------------cCccceeeeccccccC---hhHHHHHHHH
Confidence 1115668899999988 9988877664
No 267
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.60 E-value=5.4e-14 Score=126.54 Aligned_cols=163 Identities=15% Similarity=0.150 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHcCcccccc---cccceeeEEEEec------------------CceEEEEECCCchhhhhhhHHHhhhcC
Q psy1914 22 SGKTLLFARLVYSKYFESC---TSLKENVGNFTYE------------------KKNIKIVDLPGEDRLRNKFFDQYKSSA 80 (211)
Q Consensus 22 ~GKSsli~~l~~~~~~~~~---~t~~~~~~~~~~~------------------~~~~~i~D~~G~~~~~~~~~~~~~~~~ 80 (211)
++||||+.++.+-...... .|.......+.++ -..+.+||||||+.|.. +....+..+
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~-lr~~g~~~a 550 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTS-LRKRGGSLA 550 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHH-HHHhhcccC
Confidence 4599999999976653322 2222222222222 11489999999999987 566667789
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH--------------HHHHHHHHHHHH
Q psy1914 81 KGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS--------------SVVKTLLQKELN 146 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--------------~~~~~~l~~~~~ 146 (211)
|++++|+|+++... .+..+.+..+. . .++|+++|+||+|+...... ....++++.++.
T Consensus 551 DivlLVVDa~~Gi~--~qT~e~I~~lk-~-----~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~ 622 (1049)
T PRK14845 551 DLAVLVVDINEGFK--PQTIEAINILR-Q-----YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLY 622 (1049)
T ss_pred CEEEEEEECcccCC--HhHHHHHHHHH-H-----cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999986321 22222222222 1 13899999999999643210 111112221111
Q ss_pred HHhhhcccccccchhhcccccccCCCCCCe-eecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 147 LVRRTKSNQLEDTNDVAANQTFLGNPDKDF-EFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+. ..+...+.. ...+ ..+++...++++++||+||+| |++|.++|..
T Consensus 623 ~v~----~~L~~~G~~----------~e~~~~~~d~~~~v~iVpVSA~tGeG---Id~Ll~~l~~ 670 (1049)
T PRK14845 623 ELI----GKLYELGFD----------ADRFDRVQDFTRTVAIVPVSAKTGEG---IPELLMMVAG 670 (1049)
T ss_pred HHh----hHHHhcCcc----------hhhhhhhhhcCCCceEEEEEcCCCCC---HHHHHHHHHH
Confidence 100 000000000 0000 012345669999999999999 9999998853
No 268
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.60 E-value=2.3e-14 Score=111.78 Aligned_cols=93 Identities=24% Similarity=0.291 Sum_probs=67.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecCceEEEEECCCchhhhh------hhHHHhhhc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEKKNIKIVDLPGEDRLRN------KFFDQYKSS 79 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~~~ 79 (211)
....+++++|.|++|||||+++|++.+. ...|+ |..+.-+.++|++..+++.|+||.-.-.. .-.-...++
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 3457999999999999999999998765 45554 55566788999999999999998732111 012234678
Q ss_pred CCEEEEEEeCCCchhhHHHHHH
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAE 101 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~ 101 (211)
||.+++|+|+.......+.+.+
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ 162 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIER 162 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHH
Confidence 9999999999864432333333
No 269
>PRK09866 hypothetical protein; Provisional
Probab=99.59 E-value=1.1e-13 Score=117.50 Aligned_cols=113 Identities=17% Similarity=0.214 Sum_probs=69.8
Q ss_pred eEEEEECCCchhh-----hhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 56 NIKIVDLPGEDRL-----RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 56 ~~~i~D~~G~~~~-----~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
.+.++||||.... .. .....+..+|+|++|+|+..... .....+.+.++.. +...|+++|+||+|+.+
T Consensus 231 QIIFVDTPGIhk~~~~~L~k-~M~eqL~eADvVLFVVDat~~~s---~~DeeIlk~Lkk~---~K~~PVILVVNKIDl~d 303 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQK-MLNQQLARASAVLAVLDYTQLKS---ISDEEVREAILAV---GQSVPLYVLVNKFDQQD 303 (741)
T ss_pred CEEEEECCCCCCccchHHHH-HHHHHHhhCCEEEEEEeCCCCCC---hhHHHHHHHHHhc---CCCCCEEEEEEcccCCC
Confidence 6788999998542 22 33446788999999999976322 1122333333321 11259999999999864
Q ss_pred CCC--HHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHH
Q psy1914 131 AKS--SSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWM 208 (211)
Q Consensus 131 ~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i 208 (211)
... .+.+...+...+... ......++++||++|.| +++|++.|
T Consensus 304 reeddkE~Lle~V~~~L~q~--------------------------------~i~f~eIfPVSAlkG~n---id~LLdeI 348 (741)
T PRK09866 304 RNSDDADQVRALISGTLMKG--------------------------------CITPQQIFPVSSMWGYL---ANRARHEL 348 (741)
T ss_pred cccchHHHHHHHHHHHHHhc--------------------------------CCCCceEEEEeCCCCCC---HHHHHHHH
Confidence 332 222233222211100 01125789999999999 99999988
Q ss_pred hh
Q psy1914 209 VT 210 (211)
Q Consensus 209 ~~ 210 (211)
..
T Consensus 349 ~~ 350 (741)
T PRK09866 349 AN 350 (741)
T ss_pred Hh
Confidence 64
No 270
>PRK12740 elongation factor G; Reviewed
Probab=99.58 E-value=9.9e-14 Score=122.15 Aligned_cols=119 Identities=20% Similarity=0.182 Sum_probs=82.2
Q ss_pred EcCCCCCHHHHHHHHHcCcc-------------c--------ccccccceeeEEEEecCceEEEEECCCchhhhhhhHHH
Q psy1914 17 SGLSLSGKTLLFARLVYSKY-------------F--------ESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQ 75 (211)
Q Consensus 17 ~G~~~~GKSsli~~l~~~~~-------------~--------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 75 (211)
+|+.|+|||||+++|+...- . ....|+......+.+++..+++|||||+..+.. .+..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~-~~~~ 79 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTG-EVER 79 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHH-HHHH
Confidence 59999999999999963210 0 011344455566788888999999999998877 4667
Q ss_pred hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHH
Q psy1914 76 YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKEL 145 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~ 145 (211)
++..+|++++|+|+++... ......+..+.. .++|+++|+||+|+.... .....+.+.+.+
T Consensus 80 ~l~~aD~vllvvd~~~~~~--~~~~~~~~~~~~------~~~p~iiv~NK~D~~~~~-~~~~~~~l~~~l 140 (668)
T PRK12740 80 ALRVLDGAVVVVCAVGGVE--PQTETVWRQAEK------YGVPRIIFVNKMDRAGAD-FFRVLAQLQEKL 140 (668)
T ss_pred HHHHhCeEEEEEeCCCCcC--HHHHHHHHHHHH------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHH
Confidence 7888999999999987443 233333333322 238999999999997643 333444454433
No 271
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.56 E-value=4.7e-14 Score=95.18 Aligned_cols=139 Identities=21% Similarity=0.257 Sum_probs=93.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhh---hHHHhhhcCCEEEEEEe
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK---FFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~---~~~~~~~~~d~ii~v~d 88 (211)
.|++++|..|+|||||.++|.+...... ....+++++.. .+||||..--++. -......++|++++|-.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk------KTQAve~~d~~--~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK------KTQAVEFNDKG--DIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhc------ccceeeccCcc--ccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 3799999999999999999988654322 22345555431 4899996432221 12334577999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
+.++++.|.... .. .. ..|+|-|++|.||..+.+.+.....+.+ .
T Consensus 74 and~~s~f~p~f---~~------~~--~k~vIgvVTK~DLaed~dI~~~~~~L~e-a----------------------- 118 (148)
T COG4917 74 ANDPESRFPPGF---LD------IG--VKKVIGVVTKADLAEDADISLVKRWLRE-A----------------------- 118 (148)
T ss_pred ccCccccCCccc---cc------cc--ccceEEEEecccccchHhHHHHHHHHHH-c-----------------------
Confidence 988776442111 11 11 2679999999999865444433333321 1
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.-.++|.+|+....| +++|+++|..
T Consensus 119 --------------Ga~~IF~~s~~d~~g---v~~l~~~L~~ 143 (148)
T COG4917 119 --------------GAEPIFETSAVDNQG---VEELVDYLAS 143 (148)
T ss_pred --------------CCcceEEEeccCccc---HHHHHHHHHh
Confidence 115789999999999 9999999864
No 272
>KOG1532|consensus
Probab=99.56 E-value=3.9e-14 Score=108.12 Aligned_cols=183 Identities=17% Similarity=0.203 Sum_probs=101.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccc----------------------------------cceeeEEEEe-
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTS----------------------------------LKENVGNFTY- 52 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t----------------------------------~~~~~~~~~~- 52 (211)
.++++-|+++|..||||||+++||...-.....|. .|+|-+-++.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 35577899999999999999999985221111110 1111111110
Q ss_pred ------------------cCceEEEEECCCchhhh------hhhHHHh-hhcCCEEEEEEeCCCchh--hHHHHHHHHHH
Q psy1914 53 ------------------EKKNIKIVDLPGEDRLR------NKFFDQY-KSSAKGIVYVLDSSTVQK--TLRDVAESLYV 105 (211)
Q Consensus 53 ------------------~~~~~~i~D~~G~~~~~------~~~~~~~-~~~~d~ii~v~d~~~~~~--~~~~~~~~~~~ 105 (211)
+...+.++|||||-..- .-+...+ -...-++++++|.....+ .|=.-.-|-..
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 01268899999983210 0011111 123678999999754221 13222333344
Q ss_pred HHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcE
Q psy1914 106 ILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQV 185 (211)
Q Consensus 106 ~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (211)
++.. .+.|+|+|+||+|+.++.-..+-...++..-..+...+.+-..++-. .=+..++.++++.
T Consensus 176 ilyk-----tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~-----------SmSL~leeFY~~l 239 (366)
T KOG1532|consen 176 ILYK-----TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTR-----------SMSLMLEEFYRSL 239 (366)
T ss_pred HHHh-----ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhh-----------hHHHHHHHHHhhC
Confidence 4432 34999999999999877544433333332222111111111110000 0112355567889
Q ss_pred EEEEEeeecCCCccchHHHHHHHh
Q psy1914 186 SFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 186 ~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
..+.|||.||+| .++++..+.
T Consensus 240 rtv~VSs~tG~G---~ddf~~av~ 260 (366)
T KOG1532|consen 240 RTVGVSSVTGEG---FDDFFTAVD 260 (366)
T ss_pred ceEEEecccCCc---HHHHHHHHH
Confidence 999999999999 999987664
No 273
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.55 E-value=1.7e-13 Score=112.85 Aligned_cols=78 Identities=21% Similarity=0.291 Sum_probs=54.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-cccc--ccceeeEEEEe---------------------cC---ceEEEEECCC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYF-ESCT--SLKENVGNFTY---------------------EK---KNIKIVDLPG 64 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~---------------------~~---~~~~i~D~~G 64 (211)
++|+++|.+|||||||+|+|++.... ..+| |+.++.+...+ ++ ..+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999987653 3443 44455544321 11 2688999999
Q ss_pred ch----hhhhhhHHHh---hhcCCEEEEEEeCC
Q psy1914 65 ED----RLRNKFFDQY---KSSAKGIVYVLDSS 90 (211)
Q Consensus 65 ~~----~~~~~~~~~~---~~~~d~ii~v~d~~ 90 (211)
.. .... +...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~g-lg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRG-LGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhh-HHHHHHHHHHHCCEEEEEEeCC
Confidence 62 2221 22233 67899999999997
No 274
>PRK13768 GTPase; Provisional
Probab=99.53 E-value=7.6e-14 Score=108.85 Aligned_cols=139 Identities=14% Similarity=0.128 Sum_probs=72.4
Q ss_pred eEEEEECCCchhh---hhhhHHHhh---hc--CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCC
Q psy1914 56 NIKIVDLPGEDRL---RNKFFDQYK---SS--AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQD 127 (211)
Q Consensus 56 ~~~i~D~~G~~~~---~~~~~~~~~---~~--~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 127 (211)
.+.+||+||+... +. .+..+. .. ++++++++|++...........++........ .++|+++|+||+|
T Consensus 98 ~~~~~d~~g~~~~~~~~~-~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~---~~~~~i~v~nK~D 173 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRE-SGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR---LGLPQIPVLNKAD 173 (253)
T ss_pred CEEEEeCCcHHHHHhhhH-HHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH---cCCCEEEEEEhHh
Confidence 6899999998653 22 232222 22 89999999997643322222222222111101 2389999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHH
Q psy1914 128 QTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDW 207 (211)
Q Consensus 128 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~ 207 (211)
+....+.......+...-.......... ... .......++ ..++.....+++++||++++| ++++++|
T Consensus 174 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~--~~~-~~~~~~~~~------~i~~~~~~~~vi~iSa~~~~g---l~~L~~~ 241 (253)
T PRK13768 174 LLSEEELERILKWLEDPEYLLEELKLEK--GLQ-GLLSLELLR------ALEETGLPVRVIPVSAKTGEG---FDELYAA 241 (253)
T ss_pred hcCchhHHHHHHHHhCHHHHHHHHhccc--chH-HHHHHHHHH------HHHHHCCCCcEEEEECCCCcC---HHHHHHH
Confidence 9877655444433331000000000000 000 000000000 001112235789999999999 9999999
Q ss_pred Hhh
Q psy1914 208 MVT 210 (211)
Q Consensus 208 i~~ 210 (211)
|.+
T Consensus 242 I~~ 244 (253)
T PRK13768 242 IQE 244 (253)
T ss_pred HHH
Confidence 975
No 275
>KOG0082|consensus
Probab=99.53 E-value=1.1e-12 Score=104.80 Aligned_cols=86 Identities=14% Similarity=0.215 Sum_probs=76.5
Q ss_pred cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCch---------hhHHHHHHHHHHHHcCcC
Q psy1914 41 TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQ---------KTLRDVAESLYVILADPQ 111 (211)
Q Consensus 41 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~~~~~~~~~~ 111 (211)
||+|.....+++++..+.++|++||..-+.+ |.+++.+++++|||++.++.+ +.+.++...+..+++++.
T Consensus 181 ~T~GI~e~~F~~k~~~f~~~DvGGQRseRrK-WihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 181 PTTGIVEVEFTIKGLKFRMFDVGGQRSERKK-WIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred CcCCeeEEEEEeCCCceEEEeCCCcHHHhhh-HHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 5777777888999999999999999999994 999999999999999988632 357888999999999999
Q ss_pred cCCCCCcEEEEEeCCCcc
Q psy1914 112 VQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 112 ~~~~~~p~iiv~nK~Dl~ 129 (211)
+.+ .++|+++||.||.
T Consensus 260 F~~--tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 260 FAN--TSIILFLNKKDLF 275 (354)
T ss_pred ccc--CcEEEEeecHHHH
Confidence 988 9999999999995
No 276
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.53 E-value=1.3e-13 Score=108.87 Aligned_cols=129 Identities=17% Similarity=0.240 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccc-----------ccccceeeEE--EEecCc--eEEEEECCCchhhhh----
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFES-----------CTSLKENVGN--FTYEKK--NIKIVDLPGEDRLRN---- 70 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~-----------~~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~---- 70 (211)
-.++|+++|.+|+|||||+|+|++..+... .+|+...... +..++. .+.+|||||......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 357999999999999999999998775332 1233333322 344453 799999999532100
Q ss_pred ----------h---hH-------H-Hhhh--cCCEEEEEEeCCCchhhHHHH-HHHHHHHHcCcCcCCCCCcEEEEEeCC
Q psy1914 71 ----------K---FF-------D-QYKS--SAKGIVYVLDSSTVQKTLRDV-AESLYVILADPQVQSSRVNILVCCNKQ 126 (211)
Q Consensus 71 ----------~---~~-------~-~~~~--~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~ 126 (211)
+ .. . ..+. .+++++++++.+... +... .+.+..+. . ++|+++|+||+
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~--l~~~D~~~lk~l~-~------~v~vi~VinK~ 153 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG--LKPLDIEFMKRLS-K------RVNIIPVIAKA 153 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC--CCHHHHHHHHHHh-c------cCCEEEEEECC
Confidence 0 00 0 1111 378888888876411 2222 22223322 1 28999999999
Q ss_pred CccCCCCHHHHHHHHHHHHHH
Q psy1914 127 DQTLAKSSSVVKTLLQKELNL 147 (211)
Q Consensus 127 Dl~~~~~~~~~~~~l~~~~~~ 147 (211)
|+....+.....+.+.+.+..
T Consensus 154 D~l~~~e~~~~k~~i~~~l~~ 174 (276)
T cd01850 154 DTLTPEELKEFKQRIMEDIEE 174 (276)
T ss_pred CcCCHHHHHHHHHHHHHHHHH
Confidence 997654444444445544443
No 277
>KOG1490|consensus
Probab=99.49 E-value=1.1e-13 Score=113.39 Aligned_cols=155 Identities=15% Similarity=0.190 Sum_probs=106.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecCceEEEEECCCchh-----hhh-hhH--HHhhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEKKNIKIVDLPGEDR-----LRN-KFF--DQYKS 78 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~-----~~~-~~~--~~~~~ 78 (211)
....++++|.+|+|||||+|.++..+. ...| +|.....+++.++-..++++||||.-. ... ++. ...-.
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAH 246 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAH 246 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHH
Confidence 456899999999999999999988765 4444 455667788888777999999999721 100 000 01111
Q ss_pred cCCEEEEEEeCCCchh-hHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 79 SAKGIVYVLDSSTVQK-TLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
-..+|+|+.|.|.-+. +..+....+..+ .+.+.+ .|+|+|+||+|+....+..+..+.+.+.+..
T Consensus 247 LraaVLYfmDLSe~CGySva~QvkLfhsI--KpLFaN--K~~IlvlNK~D~m~~edL~~~~~~ll~~~~~---------- 312 (620)
T KOG1490|consen 247 LRSAVLYFMDLSEMCGYSVAAQVKLYHSI--KPLFAN--KVTILVLNKIDAMRPEDLDQKNQELLQTIID---------- 312 (620)
T ss_pred hhhhheeeeechhhhCCCHHHHHHHHHHh--HHHhcC--CceEEEeecccccCccccCHHHHHHHHHHHh----------
Confidence 1367899999987332 345555555555 234555 8999999999999887776666555444431
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHH
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQ 205 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~ 205 (211)
..++.++++|..+.+| +..+.
T Consensus 313 ------------------------~~~v~v~~tS~~~eeg---Vm~Vr 333 (620)
T KOG1490|consen 313 ------------------------DGNVKVVQTSCVQEEG---VMDVR 333 (620)
T ss_pred ------------------------ccCceEEEecccchhc---eeeHH
Confidence 2347889999999999 66544
No 278
>KOG1144|consensus
Probab=99.49 E-value=2.9e-13 Score=115.22 Aligned_cols=177 Identities=18% Similarity=0.249 Sum_probs=107.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccc-cccccceeeEE--E------------------EecCceEEEEECCCchhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFE-SCTSLKENVGN--F------------------TYEKKNIKIVDLPGEDRL 68 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~~--~------------------~~~~~~~~i~D~~G~~~~ 68 (211)
+.+-|+|+|...+|||-|+..+.+..... ..-+++..++. + +++--.+-++|||||++|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 45679999999999999999998744321 11111111111 1 111126889999999999
Q ss_pred hhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC------CH--------
Q psy1914 69 RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK------SS-------- 134 (211)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------~~-------- 134 (211)
.. +.......||.+|+|+|+...-. .++.+.+..+.. ++.|+|+++||+|..-.- ..
T Consensus 554 tn-lRsrgsslC~~aIlvvdImhGle--pqtiESi~lLR~------rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~ 624 (1064)
T KOG1144|consen 554 TN-LRSRGSSLCDLAILVVDIMHGLE--PQTIESINLLRM------RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQK 624 (1064)
T ss_pred hh-hhhccccccceEEEEeehhccCC--cchhHHHHHHHh------cCCCeEEeehhhhhhcccccCCCchHHHHHHHhh
Confidence 98 67777778999999999986321 233333333321 349999999999985221 11
Q ss_pred HHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 135 SVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
..+...+..+++.+-... +-+++|.. | .+.-.+++.-+.++++||.+|+| |..|+-||.++
T Consensus 625 k~v~~EF~~R~~~ii~ef--aEQgLN~~------L-----yykNk~~~~~vsiVPTSA~sGeG---ipdLl~llv~l 685 (1064)
T KOG1144|consen 625 KDVQNEFKERLNNIIVEF--AEQGLNAE------L-----YYKNKEMGETVSIVPTSAISGEG---IPDLLLLLVQL 685 (1064)
T ss_pred HHHHHHHHHHHHHHHHHH--HHcccchh------h-----eeecccccceEEeeecccccCCC---cHHHHHHHHHH
Confidence 112222222332211100 11111100 0 02223556779999999999999 99999998763
No 279
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.48 E-value=3.5e-13 Score=103.95 Aligned_cols=132 Identities=14% Similarity=0.137 Sum_probs=58.4
Q ss_pred eEEEEECCCchhhhhhhHHHhh--------hcCCEEEEEEeCCCchh---hHHHHHHHHHHHHcCcCcCCCCCcEEEEEe
Q psy1914 56 NIKIVDLPGEDRLRNKFFDQYK--------SSAKGIVYVLDSSTVQK---TLRDVAESLYVILADPQVQSSRVNILVCCN 124 (211)
Q Consensus 56 ~~~i~D~~G~~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~iiv~n 124 (211)
.+.++|||||.++.. .+.... ...-++++++|+....+ .+......+...++ .+.|.+.|+|
T Consensus 92 ~y~l~DtPGQiElf~-~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~------~~lP~vnvls 164 (238)
T PF03029_consen 92 DYLLFDTPGQIELFT-HSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR------LELPHVNVLS 164 (238)
T ss_dssp SEEEEE--SSHHHHH-HSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH------HTSEEEEEE-
T ss_pred cEEEEeCCCCEEEEE-echhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh------CCCCEEEeee
Confidence 789999999976543 233322 34568899999875332 22222222222221 2399999999
Q ss_pred CCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHH
Q psy1914 125 KQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQL 204 (211)
Q Consensus 125 K~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l 204 (211)
|+|+.+.. .....+.+.. ........... ......+.... +++.+....++.+|+++++| +++|
T Consensus 165 K~Dl~~~~-~~~~l~~~~d-~~~l~~~~~~~--~~~l~~~i~~~---------l~~~~~~~~f~pls~~~~~~---~~~L 228 (238)
T PF03029_consen 165 KIDLLSKY-LEFILEWFED-PDSLEDLLESD--YKKLNEEIAEL---------LDDFGLVIRFIPLSSKDGEG---MEEL 228 (238)
T ss_dssp -GGGS-HH-HHHHHHHHHS-HHHHHHHHHT---HHHHHHHHHHH---------CCCCSSS---EE-BTTTTTT---HHHH
T ss_pred ccCcccch-hHHHHHHhcC-hHHHHHHHHHH--HHHHHHHHHHH---------HhhcCCCceEEEEECCChHH---HHHH
Confidence 99998744 2222222211 00000000000 00000000111 11122334889999999999 9999
Q ss_pred HHHHhh
Q psy1914 205 QDWMVT 210 (211)
Q Consensus 205 ~~~i~~ 210 (211)
+..|.+
T Consensus 229 ~~~id~ 234 (238)
T PF03029_consen 229 LAAIDK 234 (238)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998865
No 280
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.48 E-value=4.4e-12 Score=100.19 Aligned_cols=120 Identities=14% Similarity=0.110 Sum_probs=73.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccc--ccccccc--eeeEEEEecCceEEEEECCCchhhhh---h---hHHHhh
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYF--ESCTSLK--ENVGNFTYEKKNIKIVDLPGEDRLRN---K---FFDQYK 77 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~--~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~~~---~---~~~~~~ 77 (211)
....++|+++|.+|+||||++|+|++.... ....+.+ ........++..+.+|||||...... + ....++
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 456789999999999999999999987642 2222222 22233456777999999999854311 1 111111
Q ss_pred --hcCCEEEEEEeC--CCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 78 --SSAKGIVYVLDS--STVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 78 --~~~d~ii~v~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
...|++++|... ......-..+.+.+....... + -.+.++|+|++|....
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~-i---w~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD-I---WRKSLVVLTHAQFSPP 168 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh-h---hccEEEEEECCccCCC
Confidence 258999999543 322221233444444444321 1 1468999999997643
No 281
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.47 E-value=6.3e-13 Score=108.18 Aligned_cols=121 Identities=22% Similarity=0.294 Sum_probs=91.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc--ccccc-----------------cccceeeEEEEecCceEEEEECCCchhhhhhh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK--YFESC-----------------TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKF 72 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~--~~~~~-----------------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 72 (211)
.+|+|+-....|||||+..|+... |.... .|+-.....+.|++..++++|||||..|--+
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE- 84 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE- 84 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch-
Confidence 479999999999999999998633 21111 2333344457889999999999999999885
Q ss_pred HHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHH
Q psy1914 73 FDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLL 141 (211)
Q Consensus 73 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l 141 (211)
.+..+.-.|++++++|+.+.. +.+++-.+.+.+... .+.|+|+||+|.+.++....+.+-+
T Consensus 85 VERvl~MVDgvlLlVDA~EGp--MPQTrFVlkKAl~~g------L~PIVVvNKiDrp~Arp~~Vvd~vf 145 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGP--MPQTRFVLKKALALG------LKPIVVINKIDRPDARPDEVVDEVF 145 (603)
T ss_pred hhhhhhhcceEEEEEEcccCC--CCchhhhHHHHHHcC------CCcEEEEeCCCCCCCCHHHHHHHHH
Confidence 777788899999999998733 566776777777532 6778899999999888765444433
No 282
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.47 E-value=4.1e-12 Score=97.56 Aligned_cols=110 Identities=16% Similarity=0.127 Sum_probs=68.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
.+...|+++|++|+|||||++.+.+..-.... ...+. +.....++..+.++||||.. .. +. .....+|++++++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~-~l-~~ak~aDvVllvi 111 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NA-MI-DIAKVADLVLLLI 111 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HH-HH-HHHHhcCEEEEEE
Confidence 45678999999999999999999864221111 11111 11233355689999999964 22 23 3356799999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcE-EEEEeCCCccCC
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNI-LVCCNKQDQTLA 131 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~~ 131 (211)
|++.... .... .+...+.. .+.|. ++|+||+|+.+.
T Consensus 112 Da~~~~~--~~~~-~i~~~l~~-----~g~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 112 DASFGFE--METF-EFLNILQV-----HGFPRVMGVLTHLDLFKK 148 (225)
T ss_pred ecCcCCC--HHHH-HHHHHHHH-----cCCCeEEEEEeccccCCc
Confidence 9976332 1122 22333321 12674 459999999743
No 283
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.46 E-value=2e-12 Score=100.41 Aligned_cols=122 Identities=13% Similarity=0.120 Sum_probs=75.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccc--c--cccceeeEEEEecCceEEEEECCCchhhh------hhh---HH
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFES--C--TSLKENVGNFTYEKKNIKIVDLPGEDRLR------NKF---FD 74 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~--~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~---~~ 74 (211)
....++|+++|.+|||||||+|+|.+...... . .|........+.++..+.+|||||..... ... ..
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 45678999999999999999999998764322 2 23333333456677799999999985431 101 11
Q ss_pred Hhhh--cCCEEEEEEeCCCc--hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC
Q psy1914 75 QYKS--SAKGIVYVLDSSTV--QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133 (211)
Q Consensus 75 ~~~~--~~d~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 133 (211)
.++. ..+++++|...+.. ...-..+.+.+....... + -.++++|.||+|......
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~-i---~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS-I---WRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh-h---HhCEEEEEeCCccCCCCC
Confidence 2332 47888888655431 111123444444443321 1 146999999999975543
No 284
>PTZ00258 GTP-binding protein; Provisional
Probab=99.46 E-value=3.9e-12 Score=104.03 Aligned_cols=85 Identities=21% Similarity=0.284 Sum_probs=61.4
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecCc-----------------eEEEEECCC
Q psy1914 5 KFRKSSQKVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEKK-----------------NIKIVDLPG 64 (211)
Q Consensus 5 ~~~~~~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~-----------------~~~i~D~~G 64 (211)
.+++...++|+++|.||||||||+|+|++... ...+| |+.++.+.+.+.+. .+.++||||
T Consensus 15 ~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpG 94 (390)
T PTZ00258 15 LGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAG 94 (390)
T ss_pred hccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCC
Confidence 34557789999999999999999999987654 33444 45667777766532 489999999
Q ss_pred chh-------hhhhhHHHhhhcCCEEEEEEeCC
Q psy1914 65 EDR-------LRNKFFDQYKSSAKGIVYVLDSS 90 (211)
Q Consensus 65 ~~~-------~~~~~~~~~~~~~d~ii~v~d~~ 90 (211)
... ...+++ ..++.+|++++|+|+.
T Consensus 95 Lv~ga~~g~gLg~~fL-~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 95 LVKGASEGEGLGNAFL-SHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCcCCcchhHHHHHHH-HHHHHCCEEEEEEeCC
Confidence 632 222222 2456799999999984
No 285
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.45 E-value=3.3e-12 Score=97.25 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=77.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-----cccceeeEEEEecCceEEEEECCCchh-------hhhhh---HHHh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-----TSLKENVGNFTYEKKNIKIVDLPGEDR-------LRNKF---FDQY 76 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-----~t~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~---~~~~ 76 (211)
++|+++|.+||||||++|.+++....... .|.........+++..+.++||||... ...++ ....
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 48999999999999999999987753322 344555566688889999999999621 11111 1223
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS 134 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 134 (211)
.++.+++++|+........-....+++..+.....+ ..++||+|..|-......
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~----k~~ivvfT~~d~~~~~~~ 134 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIW----KHTIVVFTHADELEDDSL 134 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGG----GGEEEEEEEGGGGTTTTH
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHH----hHhhHHhhhccccccccH
Confidence 457899999999875444345566667776654332 358899999988766653
No 286
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.45 E-value=1.4e-12 Score=102.89 Aligned_cols=116 Identities=21% Similarity=0.292 Sum_probs=80.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcc-------------cc-----------------------cccccceeeEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKY-------------FE-----------------------SCTSLKENVGNFT 51 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~-------------~~-----------------------~~~t~~~~~~~~~ 51 (211)
.+..+|++.+|...-||||||.||+.... +. ...|+...+..|.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 35668999999999999999999986431 00 0013333334444
Q ss_pred ecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHH--HHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 52 YEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAES--LYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 52 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
-+..+|.+.|||||++|.++|... -.-||..|+++|+.. ..++++++. +..++. - ..+++..||+||.
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTG-ASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLLG-----I--rhvvvAVNKmDLv 152 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATG-ASTADLAILLVDARK--GVLEQTRRHSFIASLLG-----I--RHVVVAVNKMDLV 152 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcc-cccccEEEEEEecch--hhHHHhHHHHHHHHHhC-----C--cEEEEEEeeeccc
Confidence 455699999999999999875443 445999999999954 334555543 233332 1 5689999999998
Q ss_pred CCCC
Q psy1914 130 LAKS 133 (211)
Q Consensus 130 ~~~~ 133 (211)
+-.+
T Consensus 153 dy~e 156 (431)
T COG2895 153 DYSE 156 (431)
T ss_pred ccCH
Confidence 7653
No 287
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.43 E-value=1.5e-12 Score=104.53 Aligned_cols=110 Identities=13% Similarity=0.151 Sum_probs=68.0
Q ss_pred CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC
Q psy1914 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 133 (211)
+..+.++||+|...-.. .....+|.++++.+...... ++.... .++. ..-++|+||+|+.....
T Consensus 148 g~d~viieT~Gv~qs~~----~i~~~aD~vlvv~~p~~gd~-iq~~k~---gi~E--------~aDIiVVNKaDl~~~~~ 211 (332)
T PRK09435 148 GYDVILVETVGVGQSET----AVAGMVDFFLLLQLPGAGDE-LQGIKK---GIME--------LADLIVINKADGDNKTA 211 (332)
T ss_pred CCCEEEEECCCCccchh----HHHHhCCEEEEEecCCchHH-HHHHHh---hhhh--------hhheEEeehhcccchhH
Confidence 34889999999874333 13456999999976433222 222221 1221 34489999999986554
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 134 SSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.......+...+...... .-.|..+++.+||++|+| +++|+++|.+
T Consensus 212 a~~~~~el~~~L~l~~~~----------------------------~~~w~~pVi~vSA~~g~G---IdeL~~~I~~ 257 (332)
T PRK09435 212 ARRAAAEYRSALRLLRPK----------------------------DPGWQPPVLTCSALEGEG---IDEIWQAIED 257 (332)
T ss_pred HHHHHHHHHHHHhccccc----------------------------ccCCCCCEEEEECCCCCC---HHHHHHHHHH
Confidence 444444444433311000 002335789999999999 9999999875
No 288
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.43 E-value=1.1e-12 Score=116.18 Aligned_cols=114 Identities=16% Similarity=0.148 Sum_probs=77.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC---------------cccc----cccccceeeEE----EEecCceEEEEECCCc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS---------------KYFE----SCTSLKENVGN----FTYEKKNIKIVDLPGE 65 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~---------------~~~~----~~~t~~~~~~~----~~~~~~~~~i~D~~G~ 65 (211)
..-.+|+++|+.++|||||+++|+.. ++.. ...|+...... +..++..+++|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 34569999999999999999999742 1111 11233322222 3334558999999999
Q ss_pred hhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 66 DRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 66 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
..|.. .....++.+|++++|+|+.+... .+....+..... .++|+++++||+|+...
T Consensus 97 ~~f~~-~~~~al~~aD~~llVvda~~g~~--~~t~~~~~~~~~------~~~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 97 VDFGG-DVTRAMRAVDGAIVVVCAVEGVM--PQTETVLRQALK------ENVKPVLFINKVDRLIN 153 (720)
T ss_pred cccHH-HHHHHHHhcCEEEEEEecCCCCC--ccHHHHHHHHHH------cCCCEEEEEEChhcccc
Confidence 99877 36677888999999999976322 222333333322 22788999999999754
No 289
>KOG0458|consensus
Probab=99.41 E-value=1.5e-12 Score=108.52 Aligned_cols=166 Identities=20% Similarity=0.306 Sum_probs=97.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC--c--------------------ccccc------------cccceeeEEEEec
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYS--K--------------------YFESC------------TSLKENVGNFTYE 53 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~--~--------------------~~~~~------------~t~~~~~~~~~~~ 53 (211)
.+.++.++++|..++|||||+.+++.. . |.-.+ -|.......++-+
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 456789999999999999999998741 1 10000 1111122223333
Q ss_pred CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCc--hhhH---HHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTV--QKTL---RDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
...++++|.|||..|.+++.... ..+|+.++|+|++-. +..| .++++ ...+++. +.- .-+++++||+|+
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~-sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~--Lgi--~qlivaiNKmD~ 327 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGA-SQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRS--LGI--SQLIVAINKMDL 327 (603)
T ss_pred ceeEEEecCCCccccchhhhccc-cccceEEEEEECCcchhhhccCCCCchHH-HHHHHHH--cCc--ceEEEEeecccc
Confidence 44899999999999988755544 449999999999742 1111 12222 2333322 222 568999999999
Q ss_pred cCCCC--HHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccch---HH
Q psy1914 129 TLAKS--SSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDV---EQ 203 (211)
Q Consensus 129 ~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i---~~ 203 (211)
.+=.+ -+++...+...+.... .|. ..++.|++||+.+|+|..-+ .+
T Consensus 328 V~Wsq~RF~eIk~~l~~fL~~~~---------------------------gf~--es~v~FIPiSGl~GeNL~k~~~~~~ 378 (603)
T KOG0458|consen 328 VSWSQDRFEEIKNKLSSFLKESC---------------------------GFK--ESSVKFIPISGLSGENLIKIEQENE 378 (603)
T ss_pred cCccHHHHHHHHHHHHHHHHHhc---------------------------Ccc--cCCcceEecccccCCcccccccchh
Confidence 74332 1222233332221100 111 22378999999999993332 24
Q ss_pred HHHHH
Q psy1914 204 LQDWM 208 (211)
Q Consensus 204 l~~~i 208 (211)
|.+|-
T Consensus 379 l~~WY 383 (603)
T KOG0458|consen 379 LSQWY 383 (603)
T ss_pred hhhhh
Confidence 56664
No 290
>PTZ00416 elongation factor 2; Provisional
Probab=99.38 E-value=1.4e-11 Score=110.54 Aligned_cols=112 Identities=19% Similarity=0.185 Sum_probs=77.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--c---------ccc--------cccceeeEEEEec----------CceEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY--F---------ESC--------TSLKENVGNFTYE----------KKNIKI 59 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~--~---------~~~--------~t~~~~~~~~~~~----------~~~~~i 59 (211)
.+-.+|+++|+.++|||||+++|+...- . .++ .|+......+.+. +..+++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 3445999999999999999999985221 0 000 1111111223343 347999
Q ss_pred EECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 60 VDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 60 ~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
+||||+..|..+ ....++.+|++|+|+|+.+... .+....|..+.. .++|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~-~~~al~~~D~ailVvda~~g~~--~~t~~~~~~~~~------~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSE-VTAALRVTDGALVVVDCVEGVC--VQTETVLRQALQ------ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHH-HHHHHhcCCeEEEEEECCCCcC--ccHHHHHHHHHH------cCCCEEEEEEChhhh
Confidence 999999999885 5666788999999999987432 334445554443 238999999999997
No 291
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=3.6e-12 Score=99.49 Aligned_cols=160 Identities=14% Similarity=0.139 Sum_probs=101.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc------cccceeeE--------------E------EE-ecC-----ce
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC------TSLKENVG--------------N------FT-YEK-----KN 56 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~------~t~~~~~~--------------~------~~-~~~-----~~ 56 (211)
...++|.++|....|||||..+|.+--..... .|+..-+. . +. .+. ..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 67899999999999999999999863221111 11110000 0 00 000 17
Q ss_pred EEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH
Q psy1914 57 IKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV 136 (211)
Q Consensus 57 ~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~ 136 (211)
+.++|.|||+.....+.... .-.|+.++|++++.++. ..++.+.+..+-- +.- ..+++|-||+||.......+
T Consensus 88 VSfVDaPGHe~LMATMLsGA-AlMDgAlLvIaANEpcP-QPQT~EHl~AleI---igi--k~iiIvQNKIDlV~~E~AlE 160 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGA-ALMDGALLVIAANEPCP-QPQTREHLMALEI---IGI--KNIIIVQNKIDLVSRERALE 160 (415)
T ss_pred EEEeeCCchHHHHHHHhcch-hhhcceEEEEecCCCCC-CCchHHHHHHHhh---hcc--ceEEEEecccceecHHHHHH
Confidence 89999999997666433322 22699999999998654 3455555433211 111 56999999999986654444
Q ss_pred HHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 137 VKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 137 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++.+.++. ....+.+++++||..+.| |+.|++.|.+
T Consensus 161 ~y~qIk~FvkG--------------------------------t~Ae~aPIIPiSA~~~~N---IDal~e~i~~ 199 (415)
T COG5257 161 NYEQIKEFVKG--------------------------------TVAENAPIIPISAQHKAN---IDALIEAIEK 199 (415)
T ss_pred HHHHHHHHhcc--------------------------------cccCCCceeeehhhhccC---HHHHHHHHHH
Confidence 33333332220 012237889999999999 9999999875
No 292
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.36 E-value=2.2e-11 Score=109.46 Aligned_cols=112 Identities=19% Similarity=0.193 Sum_probs=78.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--c---------ccc--------cccceeeEEEEec----------------
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY--F---------ESC--------TSLKENVGNFTYE---------------- 53 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~--~---------~~~--------~t~~~~~~~~~~~---------------- 53 (211)
.+-.+|+++|+.++|||||+.+|+...- . .++ .|+......+.+.
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 4456899999999999999999985321 0 000 1222122233332
Q ss_pred CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
+..++++|||||..|..+ ....++.+|++|+|+|+.+... .++...|..+.. .++|+++++||+|+.
T Consensus 97 ~~~inliDtPGh~dF~~e-~~~al~~~D~ailVvda~~Gv~--~~t~~~~~~~~~------~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVC--VQTETVLRQALG------ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHH-HHHHHhhcCEEEEEEECCCCCc--ccHHHHHHHHHH------CCCCEEEEEECCccc
Confidence 347899999999999885 5666788999999999987443 344455555543 238999999999997
No 293
>KOG0461|consensus
Probab=99.35 E-value=4.7e-11 Score=94.21 Aligned_cols=162 Identities=18% Similarity=0.166 Sum_probs=97.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc----ccccc------cccceeeEEEEec---------CceEEEEECCCchhhh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSK----YFESC------TSLKENVGNFTYE---------KKNIKIVDLPGEDRLR 69 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~----~~~~~------~t~~~~~~~~~~~---------~~~~~i~D~~G~~~~~ 69 (211)
..++++.++|...||||+|..+|..-. |.... .|.+.....+... ...+.++|+|||...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 456899999999999999999998532 21111 1111122222221 1278999999998766
Q ss_pred hhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHH-HHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHH
Q psy1914 70 NKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAES-LYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLV 148 (211)
Q Consensus 70 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 148 (211)
+. .-..-+-.|..++|+|+....+ -+.+.-. +-.++. ...++|+||+|+..........+...+++..
T Consensus 85 Rt-iiggaqiiDlm~lviDv~kG~Q-tQtAEcLiig~~~c--------~klvvvinkid~lpE~qr~ski~k~~kk~~K- 153 (522)
T KOG0461|consen 85 RT-IIGGAQIIDLMILVIDVQKGKQ-TQTAECLIIGELLC--------KKLVVVINKIDVLPENQRASKIEKSAKKVRK- 153 (522)
T ss_pred HH-HHhhhheeeeeeEEEehhcccc-cccchhhhhhhhhc--------cceEEEEeccccccchhhhhHHHHHHHHHHH-
Confidence 53 3333344688999999976432 1111111 122221 4578889999987664443333333333331
Q ss_pred hhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecC----CCccchHHHHHHHhh
Q psy1914 149 RRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDS----ASEYDVEQLQDWMVT 210 (211)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg----~g~~~i~~l~~~i~~ 210 (211)
. ++++ .++.+.+++++||+.| ++ |.||.+.|.+
T Consensus 154 --t----Le~t--------------------~f~g~~PI~~vsa~~G~~~~~~---i~eL~e~l~s 190 (522)
T KOG0461|consen 154 --T----LEST--------------------GFDGNSPIVEVSAADGYFKEEM---IQELKEALES 190 (522)
T ss_pred --H----HHhc--------------------CcCCCCceeEEecCCCccchhH---HHHHHHHHHH
Confidence 1 1111 1245589999999999 88 9999887754
No 294
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.3e-11 Score=100.25 Aligned_cols=153 Identities=15% Similarity=0.145 Sum_probs=104.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc------ccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYF------ESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
-|+..|.-..|||||+..+.+.... ....|+...+..+..++..+.++|.||++++-.++ -......|..++|
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~m-iag~~~~d~alLv 80 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNL-LAGLGGIDYALLV 80 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHH-HhhhcCCceEEEE
Confidence 4788999999999999999975531 22256666666777777799999999999988854 4445668999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|+.+.- ..+..+.+. ++.. +.. ...++|+||+|+.+....++..+.+.+.+.
T Consensus 81 V~~deGl--~~qtgEhL~-iLdl--lgi--~~giivltk~D~~d~~r~e~~i~~Il~~l~-------------------- 133 (447)
T COG3276 81 VAADEGL--MAQTGEHLL-ILDL--LGI--KNGIIVLTKADRVDEARIEQKIKQILADLS-------------------- 133 (447)
T ss_pred EeCccCc--chhhHHHHH-HHHh--cCC--CceEEEEeccccccHHHHHHHHHHHHhhcc--------------------
Confidence 9996522 133333322 2221 111 346999999999865533333333322111
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
-.+.+++.+|+++|+| |++|.+.|.++
T Consensus 134 ---------------l~~~~i~~~s~~~g~G---I~~Lk~~l~~L 160 (447)
T COG3276 134 ---------------LANAKIFKTSAKTGRG---IEELKNELIDL 160 (447)
T ss_pred ---------------cccccccccccccCCC---HHHHHHHHHHh
Confidence 0114568899999999 99999988764
No 295
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.35 E-value=2.8e-11 Score=91.14 Aligned_cols=99 Identities=14% Similarity=0.179 Sum_probs=59.0
Q ss_pred eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcE--EEEEeCCCccCCCC
Q psy1914 56 NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNI--LVCCNKQDQTLAKS 133 (211)
Q Consensus 56 ~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--iiv~nK~Dl~~~~~ 133 (211)
...++++.|...... ..+ . -++.+|.|+|+.+..... ..... ++.. ++++||+|+.+...
T Consensus 93 D~iiIEt~G~~l~~~-~~~-~--l~~~~i~vvD~~~~~~~~----~~~~~----------qi~~ad~~~~~k~d~~~~~~ 154 (199)
T TIGR00101 93 EMVFIESGGDNLSAT-FSP-E--LADLTIFVIDVAAGDKIP----RKGGP----------GITRSDLLVINKIDLAPMVG 154 (199)
T ss_pred CEEEEECCCCCcccc-cch-h--hhCcEEEEEEcchhhhhh----hhhHh----------HhhhccEEEEEhhhcccccc
Confidence 667888888532222 221 1 257899999997644311 11111 1333 88999999985321
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 134 SSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
. ..+.+.+.+... ....++++|||++|+| ++++++||.+
T Consensus 155 ~--~~~~~~~~~~~~---------------------------------~~~~~i~~~Sa~~g~g---i~el~~~i~~ 193 (199)
T TIGR00101 155 A--DLGVMERDAKKM---------------------------------RGEKPFIFTNLKTKEG---LDTVIDWIEH 193 (199)
T ss_pred c--cHHHHHHHHHHh---------------------------------CCCCCEEEEECCCCCC---HHHHHHHHHh
Confidence 1 111222222211 1226789999999999 9999999975
No 296
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.33 E-value=4e-11 Score=95.79 Aligned_cols=181 Identities=17% Similarity=0.169 Sum_probs=114.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc----------c-------cccceeeEEEEec------------------
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES----------C-------TSLKENVGNFTYE------------------ 53 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~----------~-------~t~~~~~~~~~~~------------------ 53 (211)
+.++.++.+|+.+.|||||+..|..+....- + .|-......+-++
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 4578999999999999999999987653210 0 1111111111111
Q ss_pred -----CceEEEEECCCchhhhhhhHHHhh-hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCC
Q psy1914 54 -----KKNIKIVDLPGEDRLRNKFFDQYK-SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQD 127 (211)
Q Consensus 54 -----~~~~~i~D~~G~~~~~~~~~~~~~-~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 127 (211)
++-+.++||.||+.+.+...+..+ +..|-.++++.+.+..+ .-..+.+--.+. ...|++++.||+|
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi~~a------~~lPviVvvTK~D 266 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGIALA------MELPVIVVVTKID 266 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhhhhh------hcCCEEEEEEecc
Confidence 236889999999988764344333 56899999999987543 233444433332 2399999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHH
Q psy1914 128 QTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDW 207 (211)
Q Consensus 128 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~ 207 (211)
+.+......+.+.+.+.++.....+..... .++........ ..+ ..-++++.+||.||+| ++-|.++
T Consensus 267 ~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~-~~d~v~aa~a~-k~~--------~~vvPi~~tSsVTg~G---ldlL~e~ 333 (527)
T COG5258 267 MVPDDRFQGVVEEISALLKRVGRIPLIVKD-TDDVVLAAKAM-KAG--------RGVVPIFYTSSVTGEG---LDLLDEF 333 (527)
T ss_pred cCcHHHHHHHHHHHHHHHHHhcccceeeec-cchhHHhhhhh-hcC--------CceEEEEEEecccCcc---HHHHHHH
Confidence 988776777777777666654444433221 11111111111 101 1248999999999999 9988887
Q ss_pred Hhh
Q psy1914 208 MVT 210 (211)
Q Consensus 208 i~~ 210 (211)
+..
T Consensus 334 f~~ 336 (527)
T COG5258 334 FLL 336 (527)
T ss_pred HHh
Confidence 754
No 297
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.31 E-value=2.9e-11 Score=96.72 Aligned_cols=110 Identities=16% Similarity=0.167 Sum_probs=63.0
Q ss_pred CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC
Q psy1914 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 133 (211)
+..+.++||+|..... ......+|.++++.+.... .+...+...+. . +|.++|+||+|+.....
T Consensus 126 g~D~viidT~G~~~~e----~~i~~~aD~i~vv~~~~~~----~el~~~~~~l~------~--~~~ivv~NK~Dl~~~~~ 189 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE----VDIANMADTFVVVTIPGTG----DDLQGIKAGLM------E--IADIYVVNKADGEGATN 189 (300)
T ss_pred CCCEEEEeCCCCchhh----hHHHHhhceEEEEecCCcc----HHHHHHHHHHh------h--hccEEEEEcccccchhH
Confidence 3478999999965322 1235567888887544321 22222222222 2 78899999999985543
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 134 SSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.......+...+..+. . ..-.+..+++.+||++|+| ++++++||.+
T Consensus 190 ~~~~~~~~~~~l~~l~--~--------------------------~~~~~~~~v~~iSA~~g~G---i~~L~~~i~~ 235 (300)
T TIGR00750 190 VTIARLMLALALEEIR--R--------------------------REDGWRPPVLTTSAVEGRG---IDELWDAIEE 235 (300)
T ss_pred HHHHHHHHHHHHhhcc--c--------------------------cccCCCCCEEEEEccCCCC---HHHHHHHHHH
Confidence 2222222211111000 0 0001224579999999999 9999999865
No 298
>KOG3886|consensus
Probab=99.31 E-value=1e-11 Score=92.72 Aligned_cols=127 Identities=16% Similarity=0.229 Sum_probs=84.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc----cccccccceeeEEEEecC-ceEEEEECCCchhhhhhhHH----HhhhcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY----FESCTSLKENVGNFTYEK-KNIKIVDLPGEDRLRNKFFD----QYKSSA 80 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~----~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~----~~~~~~ 80 (211)
...||+++|.+||||||+-..+..+.. .....|+.....++.+-| ..+++||.+|++.+-.++.. ..+++.
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 356899999999999998777664332 223356666666676655 48999999999866544333 367889
Q ss_pred CEEEEEEeCCCch--hhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHH
Q psy1914 81 KGIVYVLDSSTVQ--KTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTL 140 (211)
Q Consensus 81 d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 140 (211)
+++|+|||++..+ ..+.....-+..++++. +...+++..+|.||......+.+-..
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S----P~AkiF~l~hKmDLv~~d~r~~if~~ 140 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS----PEAKIFCLLHKMDLVQEDARELIFQR 140 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC----CcceEEEEEeechhcccchHHHHHHH
Confidence 9999999997632 11222222233344332 34678999999999876655444433
No 299
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.29 E-value=8e-11 Score=104.58 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=76.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc--cc---------ccc--------cccceeeEEEEe--c--CceEEEEECCCch
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK--YF---------ESC--------TSLKENVGNFTY--E--KKNIKIVDLPGED 66 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~--~~---------~~~--------~t~~~~~~~~~~--~--~~~~~i~D~~G~~ 66 (211)
+-.+|+++|+.++|||||+.+|+... .. .++ .|+......+.+ + +..++++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 34579999999999999999998522 10 000 122222223333 3 3478999999999
Q ss_pred hhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 67 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
.|... ....++.+|++++|+|+..... .+....|...... ++|.++++||+|+...
T Consensus 99 df~~~-~~~~l~~~D~avlVvda~~g~~--~~t~~~~~~~~~~------~~~~iv~iNK~D~~~~ 154 (731)
T PRK07560 99 DFGGD-VTRAMRAVDGAIVVVDAVEGVM--PQTETVLRQALRE------RVKPVLFINKVDRLIK 154 (731)
T ss_pred ChHHH-HHHHHHhcCEEEEEEECCCCCC--ccHHHHHHHHHHc------CCCeEEEEECchhhcc
Confidence 98874 6667888999999999977432 3344444443321 2678999999998743
No 300
>KOG1143|consensus
Probab=99.28 E-value=1.7e-11 Score=97.54 Aligned_cols=178 Identities=17% Similarity=0.114 Sum_probs=115.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccc-------------------cc-----cccceeeEE--EEec-----------
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFE-------------------SC-----TSLKENVGN--FTYE----------- 53 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~-------------------~~-----~t~~~~~~~--~~~~----------- 53 (211)
++|++++|...+|||||+.-|..+.... .. .+.|++... +.|.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 5799999999999999999888654211 00 122332111 1221
Q ss_pred -CceEEEEECCCchhhhhhhHHHhhh--cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 54 -KKNIKIVDLPGEDRLRNKFFDQYKS--SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 54 -~~~~~i~D~~G~~~~~~~~~~~~~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
.+-++++|++|+.+|.+. .-..+. .++..++|+.+..... ...++.+--+.. .++|++++.+|+|+..
T Consensus 247 SSKlvTfiDLAGh~kY~~T-Ti~gLtgY~Ph~A~LvVsA~~Gi~--~tTrEHLgl~~A------L~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKT-TIHGLTGYTPHFACLVVSADRGIT--WTTREHLGLIAA------LNIPFFVLVTKMDLVD 317 (591)
T ss_pred hcceEEEeecccchhhhee-eeeecccCCCceEEEEEEcCCCCc--cccHHHHHHHHH------hCCCeEEEEEeecccc
Confidence 236899999999998763 332221 3688889988865322 223333333332 2399999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 131 AKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
........+++.+.+.+.............++...+. .-.+.++-++++.+|+.+|+| ++.+..+|.
T Consensus 318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aa---------q~~~s~nivPif~vSsVsGeg---l~ll~~fLn 384 (591)
T KOG1143|consen 318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAA---------QELCSGNIVPIFAVSSVSGEG---LRLLRTFLN 384 (591)
T ss_pred chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHH---------HHhccCCceeEEEEeecCccc---hhHHHHHHh
Confidence 8777777888887777766665554433332211100 001235669999999999999 999888775
No 301
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.28 E-value=3.1e-11 Score=97.87 Aligned_cols=109 Identities=15% Similarity=0.086 Sum_probs=57.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcc-----cc--cccccceeeEEEEecCc-eEEEEECCCchhhhhhhHHHh---
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKY-----FE--SCTSLKENVGNFTYEKK-NIKIVDLPGEDRLRNKFFDQY--- 76 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~-----~~--~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~~~~~~--- 76 (211)
...+++|+|+|.+|+|||||||+|.+-.- .. ...|+. ....+..... ++.+||+||...... -...|
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~-~~~~Y~~p~~pnv~lWDlPG~gt~~f-~~~~Yl~~ 109 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTM-EPTPYPHPKFPNVTLWDLPGIGTPNF-PPEEYLKE 109 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCT-S-EEEE-SS-TTEEEEEE--GGGSS---HHHHHHH
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCC-CCeeCCCCCCCCCeEEeCCCCCCCCC-CHHHHHHH
Confidence 34578999999999999999999975221 11 111221 2222333333 899999999743322 12222
Q ss_pred --hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 77 --KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 77 --~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
+..-|.+|++.+. . +.+...++...++. .++|+.+|-||+|.
T Consensus 110 ~~~~~yD~fiii~s~-r----f~~ndv~La~~i~~-----~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 110 VKFYRYDFFIIISSE-R----FTENDVQLAKEIQR-----MGKKFYFVRTKVDS 153 (376)
T ss_dssp TTGGG-SEEEEEESS-S------HHHHHHHHHHHH-----TT-EEEEEE--HHH
T ss_pred ccccccCEEEEEeCC-C----CchhhHHHHHHHHH-----cCCcEEEEEecccc
Confidence 3457888777553 2 34444444444432 33899999999996
No 302
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.27 E-value=2.6e-11 Score=100.47 Aligned_cols=84 Identities=15% Similarity=0.278 Sum_probs=69.4
Q ss_pred cceeeEEEEe-cCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCch---------hhHHHHHHHHHHHHcCcCc
Q psy1914 43 LKENVGNFTY-EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQ---------KTLRDVAESLYVILADPQV 112 (211)
Q Consensus 43 ~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~~~~~~~~~~~ 112 (211)
+|.....+.+ ++..+.++|++|+...+. -|.+++.++++||||++.++.+ +.+.++...+..++..+.+
T Consensus 223 ~Gi~e~~f~~~~~~~~~~~DvGGqr~eRk-KW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 223 TGITEIDFNFSGSRKFRLIDVGGQRSERK-KWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp SSEEEEEEEE-TTEEEEEEEETSSGGGGG-GGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCeeEEEEEeecccccceecCCCCchhhh-hHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 3444455677 667999999999999888 4999999999999999987532 3588899999999998888
Q ss_pred CCCCCcEEEEEeCCCcc
Q psy1914 113 QSSRVNILVCCNKQDQT 129 (211)
Q Consensus 113 ~~~~~p~iiv~nK~Dl~ 129 (211)
.. .|++|++||.|+.
T Consensus 302 ~~--~~iil~lnK~D~f 316 (389)
T PF00503_consen 302 KN--TPIILFLNKIDLF 316 (389)
T ss_dssp TT--SEEEEEEE-HHHH
T ss_pred cc--CceEEeeecHHHH
Confidence 87 9999999999984
No 303
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=5.1e-11 Score=96.58 Aligned_cols=129 Identities=17% Similarity=0.309 Sum_probs=90.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc--Cc---------------ccccc--------cccceeeEEEEecCceEEEEECC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY--SK---------------YFESC--------TSLKENVGNFTYEKKNIKIVDLP 63 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~--~~---------------~~~~~--------~t~~~~~~~~~~~~~~~~i~D~~ 63 (211)
.++...+|+-.|.+|||||-.+|+. +. ..+++ .++...+-.++|++..+++.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 3456799999999999999999873 11 11222 13333445578889999999999
Q ss_pred CchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHH
Q psy1914 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQK 143 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~ 143 (211)
||++|+....+ .+-.+|..+.|+|+... ++.....+.+.++ +. ++||+-++||.|.. .+++.++.+++++
T Consensus 90 GHeDFSEDTYR-tLtAvDsAvMVIDaAKG---iE~qT~KLfeVcr---lR--~iPI~TFiNKlDR~-~rdP~ELLdEiE~ 159 (528)
T COG4108 90 GHEDFSEDTYR-TLTAVDSAVMVIDAAKG---IEPQTLKLFEVCR---LR--DIPIFTFINKLDRE-GRDPLELLDEIEE 159 (528)
T ss_pred CccccchhHHH-HHHhhheeeEEEecccC---ccHHHHHHHHHHh---hc--CCceEEEeeccccc-cCChHHHHHHHHH
Confidence 99999875333 34559999999999653 2222233344433 23 39999999999987 5556667778887
Q ss_pred HHHH
Q psy1914 144 ELNL 147 (211)
Q Consensus 144 ~~~~ 147 (211)
++..
T Consensus 160 ~L~i 163 (528)
T COG4108 160 ELGI 163 (528)
T ss_pred HhCc
Confidence 7753
No 304
>KOG0410|consensus
Probab=99.26 E-value=2e-11 Score=95.50 Aligned_cols=117 Identities=18% Similarity=0.211 Sum_probs=75.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccc---ccccceeeEEEEecCc-eEEEEECCCch---------hhhhhhHH
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFES---CTSLKENVGNFTYEKK-NIKIVDLPGED---------RLRNKFFD 74 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~---~~t~~~~~~~~~~~~~-~~~i~D~~G~~---------~~~~~~~~ 74 (211)
...-.-|+++|.+|+|||||+++|+....... ..|..+..+..++.+. .+-+-||-|.- .|.. ...
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~A-TLe 253 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQA-TLE 253 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHH-HHH
Confidence 34567899999999999999999995443221 1455555565666555 67788999973 3444 222
Q ss_pred HhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc----EEEEEeCCCccC
Q psy1914 75 QYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN----ILVCCNKQDQTL 130 (211)
Q Consensus 75 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~iiv~nK~Dl~~ 130 (211)
. ...+|.++.|+|++.|.. ++........++.-.... .| ++-|=||+|...
T Consensus 254 e-VaeadlllHvvDiShP~a--e~q~e~Vl~vL~~igv~~--~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 254 E-VAEADLLLHVVDISHPNA--EEQRETVLHVLNQIGVPS--EPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred H-HhhcceEEEEeecCCccH--HHHHHHHHHHHHhcCCCc--HHHHhHHHhhcccccccc
Confidence 2 345999999999999763 445554555554422211 23 344557777653
No 305
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.3e-10 Score=89.81 Aligned_cols=119 Identities=21% Similarity=0.246 Sum_probs=83.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcC---c-------cc--c-----cccccceeeEEEEe--cCceEEEEECCCchh
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYS---K-------YF--E-----SCTSLKENVGNFTY--EKKNIKIVDLPGEDR 67 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~---~-------~~--~-----~~~t~~~~~~~~~~--~~~~~~i~D~~G~~~ 67 (211)
+.+++++|..+|..+.|||||..+++.- . +. . ....+..+..+++| .+..+..+|+|||.+
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence 5788999999999999999999998741 1 10 0 11233444455444 556999999999999
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCC-cEEEEEeCCCccCCCCH
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRV-NILVCCNKQDQTLAKSS 134 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~~~~~ 134 (211)
|-+++.....+ .|+.|+|+.+.|.. +.+.++.+.-..+. . + .+++++||+|+.+..+.
T Consensus 88 YvKNMItgAaq-mDgAILVVsA~dGp--mPqTrEHiLlarqv----G--vp~ivvflnK~Dmvdd~el 146 (394)
T COG0050 88 YVKNMITGAAQ-MDGAILVVAATDGP--MPQTREHILLARQV----G--VPYIVVFLNKVDMVDDEEL 146 (394)
T ss_pred HHHHHhhhHHh-cCccEEEEEcCCCC--CCcchhhhhhhhhc----C--CcEEEEEEecccccCcHHH
Confidence 98877665555 89999999998843 45566554443322 1 4 46777899999875543
No 306
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.24 E-value=3.1e-11 Score=93.73 Aligned_cols=97 Identities=13% Similarity=0.084 Sum_probs=68.6
Q ss_pred hhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHH
Q psy1914 66 DRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKEL 145 (211)
Q Consensus 66 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~ 145 (211)
+++.. +.+.++.++|.+++|+|+.++..++..+.+|+..+.. .++|+++|+||+||.+..... ....+.+
T Consensus 24 eR~~~-L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~------~~i~~vIV~NK~DL~~~~~~~---~~~~~~~ 93 (245)
T TIGR00157 24 ERKNE-LTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA------QNIEPIIVLNKIDLLDDEDME---KEQLDIY 93 (245)
T ss_pred cccce-EECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH------CCCCEEEEEECcccCCCHHHH---HHHHHHH
Confidence 45555 5666889999999999999887568888887765432 238999999999996543221 1111111
Q ss_pred HHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 146 NLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
. .....++.+||++|+| +++++++|.+
T Consensus 94 ~-----------------------------------~~g~~v~~~SAktg~g---i~eLf~~l~~ 120 (245)
T TIGR00157 94 R-----------------------------------NIGYQVLMTSSKNQDG---LKELIEALQN 120 (245)
T ss_pred H-----------------------------------HCCCeEEEEecCCchh---HHHHHhhhcC
Confidence 1 0116789999999999 9999998753
No 307
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.22 E-value=9.2e-11 Score=88.99 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.-..|+++|+.|+|||||++++...
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999853
No 308
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.22 E-value=2.2e-10 Score=83.89 Aligned_cols=64 Identities=22% Similarity=0.360 Sum_probs=42.5
Q ss_pred eEEEEECCCchhh---hhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCC
Q psy1914 56 NIKIVDLPGEDRL---RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQ 126 (211)
Q Consensus 56 ~~~i~D~~G~~~~---~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 126 (211)
.+.++||||.... ...++..+++.+|++|+|+++..... ..-...+....... . ..+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~--~~~~~~l~~~~~~~---~--~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLT--ESDMEFLKQMLDPD---K--SRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGG--GHHHHHHHHHHTTT---C--SSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccc--hHHHHHHHHHhcCC---C--CeEEEEEcCC
Confidence 6899999998432 21367778899999999999987443 22344444444321 1 4489999984
No 309
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=2.7e-10 Score=99.44 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=86.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc--cc-----------ccc--------cccceeeEEEEecC-ceEEEEECCCch
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSK--YF-----------ESC--------TSLKENVGNFTYEK-KNIKIVDLPGED 66 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~--~~-----------~~~--------~t~~~~~~~~~~~~-~~~~i~D~~G~~ 66 (211)
.+-.+|.++|+.++|||||..+++-.. .. .++ .|+.....++.+++ ..++++|||||-
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 345689999999999999999998421 11 011 23333344567785 899999999999
Q ss_pred hhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC
Q psy1914 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133 (211)
Q Consensus 67 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 133 (211)
+|..+ ....++-+|+.+.|+|+.+.-. .++...|...... ++|.++++||+|.....-
T Consensus 88 DFt~E-V~rslrvlDgavvVvdaveGV~--~QTEtv~rqa~~~------~vp~i~fiNKmDR~~a~~ 145 (697)
T COG0480 88 DFTIE-VERSLRVLDGAVVVVDAVEGVE--PQTETVWRQADKY------GVPRILFVNKMDRLGADF 145 (697)
T ss_pred ccHHH-HHHHHHhhcceEEEEECCCCee--ecHHHHHHHHhhc------CCCeEEEEECccccccCh
Confidence 99985 6777888999999999987442 4555666666542 399999999999986653
No 310
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.19 E-value=8.7e-10 Score=89.77 Aligned_cols=117 Identities=12% Similarity=0.096 Sum_probs=73.6
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcC----ccc-------------ccc-----cccceee---EEEEe--c-C--c
Q psy1914 6 FRKSSQKVVLLSGLSLSGKTLLFARLVYS----KYF-------------ESC-----TSLKENV---GNFTY--E-K--K 55 (211)
Q Consensus 6 ~~~~~~~ki~i~G~~~~GKSsli~~l~~~----~~~-------------~~~-----~t~~~~~---~~~~~--~-~--~ 55 (211)
.|...++-|+++|+.++|||||+|+|.+. ... +.. .|+.+.. ..+++ . + .
T Consensus 12 ~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~ 91 (492)
T TIGR02836 12 ERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKF 91 (492)
T ss_pred HHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcc
Confidence 35567899999999999999999999976 221 111 3444444 33333 2 2 2
Q ss_pred eEEEEECCCchhh------hhh----------------------hHHHhhh-cCCEEEEEE-eCCC----chhhHHHHHH
Q psy1914 56 NIKIVDLPGEDRL------RNK----------------------FFDQYKS-SAKGIVYVL-DSST----VQKTLRDVAE 101 (211)
Q Consensus 56 ~~~i~D~~G~~~~------~~~----------------------~~~~~~~-~~d~ii~v~-d~~~----~~~~~~~~~~ 101 (211)
++.++||+|...- +.. -+...+. ++++.|+|. |.+- ++. +.++.+
T Consensus 92 ~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~-y~~aEe 170 (492)
T TIGR02836 92 KVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPRED-YVEAEE 170 (492)
T ss_pred cEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCcccccccc-chHHHH
Confidence 8999999996210 000 0223344 799999998 8751 122 344444
Q ss_pred HHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 102 SLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 102 ~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
.+...++. .++|+++|+||+|-
T Consensus 171 ~~i~eLk~-----~~kPfiivlN~~dp 192 (492)
T TIGR02836 171 RVIEELKE-----LNKPFIILLNSTHP 192 (492)
T ss_pred HHHHHHHh-----cCCCEEEEEECcCC
Confidence 44444433 33999999999994
No 311
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.17 E-value=6e-10 Score=88.05 Aligned_cols=127 Identities=20% Similarity=0.304 Sum_probs=72.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-----------cccceeeEEEEe--cCc--eEEEEECCCchh-------h
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-----------TSLKENVGNFTY--EKK--NIKIVDLPGEDR-------L 68 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-----------~t~~~~~~~~~~--~~~--~~~i~D~~G~~~-------~ 68 (211)
+++|+++|.+|+|||||+|.|++....... .+.........+ ++. .++++||||... +
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 579999999999999999999986642221 122222222222 222 899999999521 0
Q ss_pred hh------hhHHHhh-------------hcCCEEEEEEeCCCchhhHHHHH-HHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 69 RN------KFFDQYK-------------SSAKGIVYVLDSSTVQKTLRDVA-ESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 69 ~~------~~~~~~~-------------~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
.. .-...++ .+.++++|+++.+... +.... +.+..+ . ..+++|-|+.|+|.
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~--L~~~Di~~mk~L-s------~~vNvIPvIaKaD~ 154 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG--LKPLDIEFMKRL-S------KRVNVIPVIAKADT 154 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS--S-HHHHHHHHHH-T------TTSEEEEEESTGGG
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc--chHHHHHHHHHh-c------ccccEEeEEecccc
Confidence 00 0011111 2368999999986521 22222 223333 2 12889999999999
Q ss_pred cCCCCHHHHHHHHHHHHH
Q psy1914 129 TLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~ 146 (211)
....+.......+.+.+.
T Consensus 155 lt~~el~~~k~~i~~~l~ 172 (281)
T PF00735_consen 155 LTPEELQAFKQRIREDLE 172 (281)
T ss_dssp S-HHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 887776666666666554
No 312
>KOG0463|consensus
Probab=99.14 E-value=1.6e-10 Score=92.32 Aligned_cols=178 Identities=17% Similarity=0.176 Sum_probs=106.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccc-------------------cccccceeeEEEE-----------------e--
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFE-------------------SCTSLKENVGNFT-----------------Y-- 52 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~-------------------~~~t~~~~~~~~~-----------------~-- 52 (211)
++||+++|+..+|||||+.-|..+.... ...+.+-.+-.+. |
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 6799999999999999999888654211 0112221111111 1
Q ss_pred --cC--ceEEEEECCCchhhhhhhHHHhh--hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCC
Q psy1914 53 --EK--KNIKIVDLPGEDRLRNKFFDQYK--SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQ 126 (211)
Q Consensus 53 --~~--~~~~i~D~~G~~~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 126 (211)
.+ +-++++|++||++|... .-.-+ .-.|.-++++-+...- +.-..+.+-..+. ..+|+++|.+|+
T Consensus 213 Ice~saKviTFIDLAGHEkYLKT-TvFGMTGH~PDf~MLMiGaNaGI--iGmTKEHLgLALa------L~VPVfvVVTKI 283 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKT-TVFGMTGHMPDFTMLMIGANAGI--IGMTKEHLGLALA------LHVPVFVVVTKI 283 (641)
T ss_pred eccccceeEEEEeccchhhhhhe-eeeccccCCCCceEEEecccccc--eeccHHhhhhhhh------hcCcEEEEEEee
Confidence 11 26889999999998763 22222 2368888888775422 3334444444332 129999999999
Q ss_pred CccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHH
Q psy1914 127 DQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQD 206 (211)
Q Consensus 127 Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~ 206 (211)
|+..+....+..+.+.+.+..........+....++..... ..|. ..+-+++|.+|-.||++ ++.|..
T Consensus 284 DMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A--------~NF~-Ser~CPIFQvSNVtG~N---L~LLkm 351 (641)
T KOG0463|consen 284 DMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAA--------VNFP-SERVCPIFQVSNVTGTN---LPLLKM 351 (641)
T ss_pred ccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEee--------ccCc-cccccceEEeccccCCC---hHHHHH
Confidence 99877766666666665554432333222221111111100 0011 13558999999999999 999888
Q ss_pred HHh
Q psy1914 207 WMV 209 (211)
Q Consensus 207 ~i~ 209 (211)
||.
T Consensus 352 FLN 354 (641)
T KOG0463|consen 352 FLN 354 (641)
T ss_pred HHh
Confidence 875
No 313
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.13 E-value=1.1e-09 Score=88.93 Aligned_cols=78 Identities=26% Similarity=0.306 Sum_probs=57.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecCc-----------------eEEEEECCCchh----
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEKK-----------------NIKIVDLPGEDR---- 67 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~-----------------~~~i~D~~G~~~---- 67 (211)
++|+++|.||||||||+|+|++... ...+| |+.++.+.+.+.+. .+.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 7899999999999999999998774 33443 55677777665542 589999999632
Q ss_pred ---hhhhhHHHhhhcCCEEEEEEeCC
Q psy1914 68 ---LRNKFFDQYKSSAKGIVYVLDSS 90 (211)
Q Consensus 68 ---~~~~~~~~~~~~~d~ii~v~d~~ 90 (211)
...++ -..++.+|++++|+|+.
T Consensus 83 g~glg~~f-L~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQF-LANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHH-HHHHHhCCEEEEEEeCC
Confidence 11112 22356799999999985
No 314
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.12 E-value=7.2e-10 Score=87.03 Aligned_cols=76 Identities=26% Similarity=0.364 Sum_probs=55.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecCc-----------------eEEEEECCCchh------
Q psy1914 14 VLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEKK-----------------NIKIVDLPGEDR------ 67 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~~-----------------~~~i~D~~G~~~------ 67 (211)
|+++|.+|||||||+|+|++... ...+ .|+.++.+.+.+.+. .+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999998775 3334 355677777766553 489999999632
Q ss_pred -hhhhhHHHhhhcCCEEEEEEeCC
Q psy1914 68 -LRNKFFDQYKSSAKGIVYVLDSS 90 (211)
Q Consensus 68 -~~~~~~~~~~~~~d~ii~v~d~~ 90 (211)
....+. ..++.+|++++|+|+.
T Consensus 81 glg~~fL-~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFL-SHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHH-HHHHhCCEEEEEEeCc
Confidence 112122 2356799999999974
No 315
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.12 E-value=3e-10 Score=87.10 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc-----------cccccccc------------------eeeEEEEe-------
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY-----------FESCTSLK------------------ENVGNFTY------- 52 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~-----------~~~~~t~~------------------~~~~~~~~------- 52 (211)
.+-.+|.|.|+||+|||||+++|...-. .++.|.+| ..+..+.-
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 4567999999999999999999974210 11111111 11112211
Q ss_pred -------------cCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcE
Q psy1914 53 -------------EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNI 119 (211)
Q Consensus 53 -------------~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 119 (211)
-+..+.+++|.|.-+-... ...-+|.+++|+-..-.+. ++....-+.+ ++=
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~----I~~~aD~~v~v~~Pg~GD~-iQ~~KaGimE-----------iaD 170 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVD----IADMADTVVLVLVPGLGDE-IQAIKAGIME-----------IAD 170 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHH----HHTTSSEEEEEEESSTCCC-CCTB-TTHHH-----------H-S
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHH----HHHhcCeEEEEecCCCccH-HHHHhhhhhh-----------hcc
Confidence 1347889999886543321 2355899999986543222 2222222222 344
Q ss_pred EEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCcc
Q psy1914 120 LVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEY 199 (211)
Q Consensus 120 iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~ 199 (211)
++|+||+|+..+.. ....+...+...... .-.|..+++.|||.+|+|
T Consensus 171 i~vVNKaD~~gA~~---~~~~l~~~l~l~~~~----------------------------~~~W~ppV~~tsA~~~~G-- 217 (266)
T PF03308_consen 171 IFVVNKADRPGADR---TVRDLRSMLHLLRER----------------------------EDGWRPPVLKTSALEGEG-- 217 (266)
T ss_dssp EEEEE--SHHHHHH---HHHHHHHHHHHCSTS----------------------------CTSB--EEEEEBTTTTBS--
T ss_pred EEEEeCCChHHHHH---HHHHHHHHHhhcccc----------------------------ccCCCCCEEEEEeCCCCC--
Confidence 88999999653322 222333323210000 114668999999999999
Q ss_pred chHHHHHHHhh
Q psy1914 200 DVEQLQDWMVT 210 (211)
Q Consensus 200 ~i~~l~~~i~~ 210 (211)
+++|++.|.+
T Consensus 218 -i~eL~~~i~~ 227 (266)
T PF03308_consen 218 -IDELWEAIDE 227 (266)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 9999998865
No 316
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.11 E-value=5e-10 Score=77.54 Aligned_cols=89 Identities=17% Similarity=0.022 Sum_probs=61.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc--cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC--TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDS 89 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~ 89 (211)
+||+++|..|+|||+|+.++....+...+ +|.+ +.. +...+++.++.++.|++.
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~-~~~~~~~s~~~~~~v~~~ 56 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDV-YDPTSYESFDVVLQCWRV 56 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhh-ccccccCCCCEEEEEEEc
Confidence 48999999999999999999877664332 2222 222 334456778999999999
Q ss_pred CCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 90 STVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
.+..+ +... |...++.. .+.++|.++++||.|+..
T Consensus 57 ~~~~s-~~~~--~~~~i~~~---~k~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 57 DDRDS-ADNK--NVPEVLVG---NKSDLPILVGGNRDVLEE 91 (124)
T ss_pred cCHHH-HHHH--hHHHHHhc---CCCCCcEEEEeechhhHh
Confidence 87544 4433 44444332 223489999999999853
No 317
>KOG3905|consensus
Probab=99.10 E-value=1.3e-08 Score=80.07 Aligned_cols=90 Identities=18% Similarity=0.107 Sum_probs=57.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCc------eEEEEECCCchhhhhhhHHHhhhc----
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKK------NIKIVDLPGEDRLRNKFFDQYKSS---- 79 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~------~~~i~D~~G~~~~~~~~~~~~~~~---- 79 (211)
..-.|+++|..++|||||+.+|-+.+-..... +..+..+.+.+. ++.+|=+.|...-.. +....+..
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~~Kkgs--gLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~-LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSETVKKGS--GLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKG-LLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccccCCCC--CcceEEEecccccchhhhhcceEEecCchhhhh-HHhhcccccCcc
Confidence 45689999999999999999998866333333 334444443332 788998888754433 34433332
Q ss_pred CCEEEEEEeCCCchhhHHHHHHH
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAES 102 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~ 102 (211)
-..+|+++|.++|..-++....|
T Consensus 128 etlviltasms~Pw~~lesLqkW 150 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKW 150 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHH
Confidence 24678888998885544444433
No 318
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.09 E-value=3.7e-09 Score=90.71 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=72.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc---c-ccceeeEEEEecCceEEEEECCCchhh------hhhh---HHHhh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC---T-SLKENVGNFTYEKKNIKIVDLPGEDRL------RNKF---FDQYK 77 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~---~-t~~~~~~~~~~~~~~~~i~D~~G~~~~------~~~~---~~~~~ 77 (211)
.++|+++|.+|+||||++|.|++....... + |+.........++..+.++||||.... ...+ ...++
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~L 197 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFI 197 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHH
Confidence 468999999999999999999987632211 2 222222233456779999999998532 1111 11233
Q ss_pred h--cCCEEEEEEeCCCchh--hHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 78 S--SAKGIVYVLDSSTVQK--TLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 78 ~--~~d~ii~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
. .+|++|+|........ .-..+.+.+..+....-+ ..+|||+|+.|....
T Consensus 198 sk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iw----k~tIVVFThgD~lpp 251 (763)
T TIGR00993 198 KKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIW----FNAIVTLTHAASAPP 251 (763)
T ss_pred hcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhH----cCEEEEEeCCccCCC
Confidence 3 4799999876543211 112344455555543322 358999999998753
No 319
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.09 E-value=3.7e-09 Score=81.45 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.-++++++|+.++||||+++++.+..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCC
Confidence 45689999999999999999999864
No 320
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.08 E-value=9.5e-09 Score=80.09 Aligned_cols=154 Identities=16% Similarity=0.184 Sum_probs=89.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc-----------ccccccccee------------------eEEE---------
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY-----------FESCTSLKEN------------------VGNF--------- 50 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~-----------~~~~~t~~~~------------------~~~~--------- 50 (211)
.+-..|.|.|.||+|||||+..|...-. .+..|-++.. +..+
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 3456899999999999999999874211 1111111110 0000
Q ss_pred -----------EecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcE
Q psy1914 51 -----------TYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNI 119 (211)
Q Consensus 51 -----------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 119 (211)
.--+..+.|++|.|--+..... .+-+|.++++.=..-.+. ++....-+.+ +-=
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev~I----~~~aDt~~~v~~pg~GD~-~Q~iK~GimE-----------iaD 192 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSEVDI----ANMADTFLVVMIPGAGDD-LQGIKAGIME-----------IAD 192 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcchhHH----hhhcceEEEEecCCCCcH-HHHHHhhhhh-----------hhh
Confidence 0012378889998875544322 244898888875543232 3333322222 445
Q ss_pred EEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCcc
Q psy1914 120 LVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEY 199 (211)
Q Consensus 120 iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~ 199 (211)
++|+||.|+.++. .....+...+.... ..+..-+|..+++.+||.+|+|
T Consensus 193 i~vINKaD~~~A~---~a~r~l~~al~~~~--------------------------~~~~~~~W~ppv~~t~A~~g~G-- 241 (323)
T COG1703 193 IIVINKADRKGAE---KAARELRSALDLLR--------------------------EVWRENGWRPPVVTTSALEGEG-- 241 (323)
T ss_pred eeeEeccChhhHH---HHHHHHHHHHHhhc--------------------------ccccccCCCCceeEeeeccCCC--
Confidence 8899999954332 22222333232211 0122336888999999999999
Q ss_pred chHHHHHHHhh
Q psy1914 200 DVEQLQDWMVT 210 (211)
Q Consensus 200 ~i~~l~~~i~~ 210 (211)
+++|++-|.+
T Consensus 242 -i~~L~~ai~~ 251 (323)
T COG1703 242 -IDELWDAIED 251 (323)
T ss_pred -HHHHHHHHHH
Confidence 9999998764
No 321
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.07 E-value=5.5e-10 Score=87.79 Aligned_cols=26 Identities=31% Similarity=0.262 Sum_probs=22.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+...-|.++|.+|||||||++++++.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44578899999999999999988763
No 322
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.07 E-value=6.5e-10 Score=81.48 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=81.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc---ccc--------------------cccccceeeE-EEEe---------------
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK---YFE--------------------SCTSLKENVG-NFTY--------------- 52 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~---~~~--------------------~~~t~~~~~~-~~~~--------------- 52 (211)
++|.+.|++|||||+|+.+++..- +.. ..+..+...+ .+..
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~ 93 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD 93 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence 699999999999999999987521 110 0011111111 1100
Q ss_pred -cCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHc-CcCcCCCCCcEEEEEeCCCccC
Q psy1914 53 -EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILA-DPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 53 -~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
....+-+++..| ..-.+ ....+. ...-|+|+|+...+... ++ .+.+. ..=++|+||.||.+
T Consensus 94 ~~~~Dll~iEs~G-NL~~~--~sp~L~-d~~~v~VidvteGe~~P----------~K~gP~i~---~aDllVInK~DLa~ 156 (202)
T COG0378 94 FPDLDLLFIESVG-NLVCP--FSPDLG-DHLRVVVIDVTEGEDIP----------RKGGPGIF---KADLLVINKTDLAP 156 (202)
T ss_pred CCcCCEEEEecCc-ceecc--cCcchh-hceEEEEEECCCCCCCc----------ccCCCcee---EeeEEEEehHHhHH
Confidence 112566667777 21111 111111 23778888988755311 01 11111 23478999999987
Q ss_pred CCCH--HHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHH
Q psy1914 131 AKSS--SVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWM 208 (211)
Q Consensus 131 ~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i 208 (211)
.... +...+... + +.++.+++.+|++||+| ++++.+||
T Consensus 157 ~v~~dlevm~~da~-~------------------------------------~np~~~ii~~n~ktg~G---~~~~~~~i 196 (202)
T COG0378 157 YVGADLEVMARDAK-E------------------------------------VNPEAPIIFTNLKTGEG---LDEWLRFI 196 (202)
T ss_pred HhCccHHHHHHHHH-H------------------------------------hCCCCCEEEEeCCCCcC---HHHHHHHH
Confidence 6543 32222221 1 23447899999999999 99999998
Q ss_pred hh
Q psy1914 209 VT 210 (211)
Q Consensus 209 ~~ 210 (211)
..
T Consensus 197 ~~ 198 (202)
T COG0378 197 EP 198 (202)
T ss_pred Hh
Confidence 64
No 323
>KOG2486|consensus
Probab=99.06 E-value=1.3e-10 Score=89.27 Aligned_cols=114 Identities=21% Similarity=0.250 Sum_probs=69.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc--cccc--eeeEEEEecCceEEEEECCCc----------hhhhhhhH
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC--TSLK--ENVGNFTYEKKNIKIVDLPGE----------DRLRNKFF 73 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~t~~--~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~ 73 (211)
..+++++++.|.+|+|||||+|.+.+.+..... +..+ ..+..+.. +..+.++|.||. ..+.. +.
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v-~~~~~~vDlPG~~~a~y~~~~~~d~~~-~t 210 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV-GKSWYEVDLPGYGRAGYGFELPADWDK-FT 210 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec-cceEEEEecCCcccccCCccCcchHhH-hH
Confidence 356789999999999999999999987653332 1222 12222333 338999999993 22333 45
Q ss_pred HHhhhc---CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 74 DQYKSS---AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 74 ~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
..|+.. --.+.+.+|++.+-. ........++.. .++|+.+|+||||....
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i~---~~D~~~i~~~ge-----~~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPIQ---PTDNPEIAWLGE-----NNVPMTSVFTKCDKQKK 263 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCCC---CCChHHHHHHhh-----cCCCeEEeeehhhhhhh
Confidence 555433 233455667765322 111122223322 23999999999998643
No 324
>KOG0460|consensus
Probab=99.04 E-value=2.1e-09 Score=84.79 Aligned_cols=120 Identities=22% Similarity=0.225 Sum_probs=87.9
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcC-------c---cc-------ccccccceeeEEEEecC--ceEEEEECCCchh
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYS-------K---YF-------ESCTSLKENVGNFTYEK--KNIKIVDLPGEDR 67 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~-------~---~~-------~~~~t~~~~~~~~~~~~--~~~~i~D~~G~~~ 67 (211)
+.+++++|.-+|....|||||-.+++.- + +. +....+..+..+++|+- ..+.-.|+|||.+
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 5678999999999999999999988731 1 11 11134556677776654 3888899999999
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS 134 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 134 (211)
|-.++....-+ .|+.|+|+.++|.. +.+.++.+.-..+-.- ..+++.+||.|+.+..+.
T Consensus 130 YIKNMItGaaq-MDGaILVVaatDG~--MPQTrEHlLLArQVGV-----~~ivvfiNKvD~V~d~e~ 188 (449)
T KOG0460|consen 130 YIKNMITGAAQ-MDGAILVVAATDGP--MPQTREHLLLARQVGV-----KHIVVFINKVDLVDDPEM 188 (449)
T ss_pred HHHHhhcCccc-cCceEEEEEcCCCC--CcchHHHHHHHHHcCC-----ceEEEEEecccccCCHHH
Confidence 98876554434 89999999999854 6778877666554321 458888999999866544
No 325
>KOG0085|consensus
Probab=98.97 E-value=2.9e-10 Score=85.30 Aligned_cols=88 Identities=16% Similarity=0.222 Sum_probs=68.9
Q ss_pred cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCC---------chhhHHHHHHHHHHHHcCcC
Q psy1914 41 TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSST---------VQKTLRDVAESLYVILADPQ 111 (211)
Q Consensus 41 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~---------~~~~~~~~~~~~~~~~~~~~ 111 (211)
||+|.....+..++..+.+.|.+|+..-+. -|-+++.+...+++++..+. .++.+++....+..++..++
T Consensus 185 PTTGi~eypfdl~~iifrmvDvGGqrserr-KWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPW 263 (359)
T KOG0085|consen 185 PTTGIIEYPFDLQKIIFRMVDVGGQRSERR-KWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 263 (359)
T ss_pred CcccceecCcchhhheeeeeecCCchhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcccc
Confidence 444444444455555788999999999998 49999998888888766542 24557888889999999999
Q ss_pred cCCCCCcEEEEEeCCCccCC
Q psy1914 112 VQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 112 ~~~~~~p~iiv~nK~Dl~~~ 131 (211)
+.. .++|+.+||.|+...
T Consensus 264 F~n--ssVIlFLNKkDlLEe 281 (359)
T KOG0085|consen 264 FQN--SSVILFLNKKDLLEE 281 (359)
T ss_pred ccC--CceEEEechhhhhhh
Confidence 888 899999999999754
No 326
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.96 E-value=3.3e-09 Score=79.37 Aligned_cols=99 Identities=13% Similarity=0.040 Sum_probs=59.8
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHH
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNL 147 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~ 147 (211)
++. ++..+++++|++++|+|++++..... ..+.. . . .++|+++|+||+|+............+.+.+.
T Consensus 24 ~~~-~l~~~~~~ad~il~VvD~~~~~~~~~---~~l~~---~--~--~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~- 91 (190)
T cd01855 24 ILN-LLSSISPKKALVVHVVDIFDFPGSLI---PRLRL---F--G--GNNPVILVGNKIDLLPKDKNLVRIKNWLRAKA- 91 (190)
T ss_pred HHH-HHHhcccCCcEEEEEEECccCCCccc---hhHHH---h--c--CCCcEEEEEEchhcCCCCCCHHHHHHHHHHHH-
Confidence 455 67888899999999999987542111 11111 1 1 23899999999999754332221111110000
Q ss_pred HhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 148 VRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.... . .....++.+||++|+| +++|+++|.+
T Consensus 92 ~~~~----------------------------~-~~~~~i~~vSA~~~~g---i~eL~~~l~~ 122 (190)
T cd01855 92 AAGL----------------------------G-LKPKDVILISAKKGWG---VEELINAIKK 122 (190)
T ss_pred Hhhc----------------------------C-CCcccEEEEECCCCCC---HHHHHHHHHH
Confidence 0000 0 0012468899999999 9999999865
No 327
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.95 E-value=2.8e-09 Score=77.21 Aligned_cols=89 Identities=12% Similarity=0.135 Sum_probs=56.4
Q ss_pred hHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhh
Q psy1914 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRT 151 (211)
Q Consensus 72 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 151 (211)
++.+..+++|++++|+|++++..... ..+...+.. .++|+++|+||+|+.+.. ... .+. .+..
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~---~~l~~~~~~-----~~~p~iiv~NK~Dl~~~~---~~~-~~~-~~~~---- 67 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRS---RKLERYVLE-----LGKKLLIVLNKADLVPKE---VLE-KWK-SIKE---- 67 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCC---HHHHHHHHh-----CCCcEEEEEEhHHhCCHH---HHH-HHH-HHHH----
Confidence 67778888999999999987543111 122222221 238999999999995321 111 111 0100
Q ss_pred cccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 152 KSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++.+||++|+| +++|++.|.+
T Consensus 68 ------------------------------~~~~~~~~iSa~~~~g---i~~L~~~l~~ 93 (156)
T cd01859 68 ------------------------------SEGIPVVYVSAKERLG---TKILRRTIKE 93 (156)
T ss_pred ------------------------------hCCCcEEEEEcccccc---HHHHHHHHHH
Confidence 0014578899999999 9999998864
No 328
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.94 E-value=6.7e-08 Score=81.27 Aligned_cols=88 Identities=24% Similarity=0.249 Sum_probs=58.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCc------eEEEEECCCchhhhhhhHHHhhhc---
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKK------NIKIVDLPGEDRLRNKFFDQYKSS--- 79 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~------~~~i~D~~G~~~~~~~~~~~~~~~--- 79 (211)
..+..|+|+|..++|||||+.+|.+.+- ..++.+..+..+...+. .+.+|-+.|...+.. +....+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~-LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSD-LLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHh-HhcccCCcccc
Confidence 3567999999999999999999876432 22455544544433221 789999988665555 44433321
Q ss_pred -CCEEEEEEeCCCchhhHHHH
Q psy1914 80 -AKGIVYVLDSSTVQKTLRDV 99 (211)
Q Consensus 80 -~d~ii~v~d~~~~~~~~~~~ 99 (211)
--.+++|+|.+.|...+++.
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL 120 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESL 120 (472)
T ss_pred cceEEEEEecCCChHHHHHHH
Confidence 35688889999886544333
No 329
>KOG0468|consensus
Probab=98.88 E-value=7.5e-09 Score=88.00 Aligned_cols=112 Identities=21% Similarity=0.220 Sum_probs=77.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccc---------cccccce----e-------eEEEEe---cCc--eEEEEECC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFE---------SCTSLKE----N-------VGNFTY---EKK--NIKIVDLP 63 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~---------~~~t~~~----~-------~~~~~~---~~~--~~~i~D~~ 63 (211)
..-.+|+++|+-++|||+|+..|....-+. .++++.+ + -.++-+ +++ -+++.|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 344689999999999999999998654321 1111111 0 011111 222 78999999
Q ss_pred CchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
||-.|..+ ....++-+|++++|+|+.+.- .-...+.+...+++. .|+.+|+||+|+.
T Consensus 206 GHVnF~DE-~ta~l~~sDgvVlvvDv~EGV--mlntEr~ikhaiq~~------~~i~vviNKiDRL 262 (971)
T KOG0468|consen 206 GHVNFSDE-TTASLRLSDGVVLVVDVAEGV--MLNTERIIKHAIQNR------LPIVVVINKVDRL 262 (971)
T ss_pred CcccchHH-HHHHhhhcceEEEEEEcccCc--eeeHHHHHHHHHhcc------CcEEEEEehhHHH
Confidence 99999886 555677799999999997643 345555566665532 8999999999974
No 330
>KOG0099|consensus
Probab=98.88 E-value=9.9e-09 Score=78.41 Aligned_cols=79 Identities=22% Similarity=0.361 Sum_probs=65.2
Q ss_pred EEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCc---------hhhHHHHHHHHHHHHcCcCcCCCCCcE
Q psy1914 49 NFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTV---------QKTLRDVAESLYVILADPQVQSSRVNI 119 (211)
Q Consensus 49 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p~ 119 (211)
.+.++..++.++|.+|+..-+. -|-.++++..++|+|+.+++. ++.+.++...+..+.++.++.. +.+
T Consensus 196 ~FqVdkv~FhMfDVGGQRDeRr-KWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~t--isv 272 (379)
T KOG0099|consen 196 KFQVDKVNFHMFDVGGQRDERR-KWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRT--ISV 272 (379)
T ss_pred EEeccccceeeeccCCchhhhh-hHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhh--hhe
Confidence 3444455899999999999998 499999999999999988742 2457888888888888877776 899
Q ss_pred EEEEeCCCccC
Q psy1914 120 LVCCNKQDQTL 130 (211)
Q Consensus 120 iiv~nK~Dl~~ 130 (211)
|+.+||.|+..
T Consensus 273 IlFLNKqDlla 283 (379)
T KOG0099|consen 273 ILFLNKQDLLA 283 (379)
T ss_pred eEEecHHHHHH
Confidence 99999999963
No 331
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.88 E-value=6.5e-09 Score=75.37 Aligned_cols=55 Identities=25% Similarity=0.247 Sum_probs=38.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceee--EEEEecCceEEEEECCCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENV--GNFTYEKKNIKIVDLPGE 65 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~ 65 (211)
.+.+|+++|.+|+|||||+|+|.+.......++.+... ..+.. +..+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL-MKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc-CCCEEEEECcCC
Confidence 46789999999999999999999866544333222222 22222 236899999994
No 332
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1.8e-08 Score=80.97 Aligned_cols=79 Identities=25% Similarity=0.348 Sum_probs=58.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecC-------------c-----eEEEEECCCch---
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEK-------------K-----NIKIVDLPGED--- 66 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~-------------~-----~~~i~D~~G~~--- 66 (211)
.+++.|+|.||||||||+|+++.... ...|| |+.++.+...+.+ . .+.++|.+|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999998774 36665 7778877654321 1 78899999972
Q ss_pred ----hhhhhhHHHhhhcCCEEEEEEeCC
Q psy1914 67 ----RLRNKFFDQYKSSAKGIVYVLDSS 90 (211)
Q Consensus 67 ----~~~~~~~~~~~~~~d~ii~v~d~~ 90 (211)
-.-.++.. -++.+|+++.|+|++
T Consensus 82 s~GeGLGNkFL~-~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLD-NIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHH-hhhhcCeEEEEEEec
Confidence 12222332 356799999999987
No 333
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.83 E-value=1.1e-08 Score=75.27 Aligned_cols=55 Identities=22% Similarity=0.340 Sum_probs=39.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc--cccceeeEEEEecCceEEEEECCCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC--TSLKENVGNFTYEKKNIKIVDLPGE 65 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
..++++++|.+|+|||||+|+|.+....... |.++.....+.++ ..+.++||||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-KKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-CCEEEEECcCC
Confidence 3479999999999999999999987653333 3333333334443 37899999994
No 334
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.83 E-value=1.5e-08 Score=72.13 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=39.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc--cccceeeEEEEecCceEEEEECCCc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC--TSLKENVGNFTYEKKNIKIVDLPGE 65 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
..+++++|.+|+|||||+|++.+....... +..+.....+.+++ .+.+|||||.
T Consensus 83 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 83 NATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 348999999999999999999987764332 22333334455544 6899999996
No 335
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.83 E-value=1.1e-07 Score=76.10 Aligned_cols=130 Identities=20% Similarity=0.313 Sum_probs=79.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc-----------ccccceeeEEEEec--Cc--eEEEEECCCchhh-----
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES-----------CTSLKENVGNFTYE--KK--NIKIVDLPGEDRL----- 68 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~-----------~~t~~~~~~~~~~~--~~--~~~i~D~~G~~~~----- 68 (211)
.-.+.|+++|++|+||||++|.|++...... .+++........+. +. .++++||||...+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 4568999999999999999999998643222 13333344443333 32 8999999997321
Q ss_pred ---------hhhhHHHhh--------------hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeC
Q psy1914 69 ---------RNKFFDQYK--------------SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNK 125 (211)
Q Consensus 69 ---------~~~~~~~~~--------------~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 125 (211)
.. ....|+ .++++++|.+-.+. . .+....-...+-+. ..+.+|-|+.|
T Consensus 101 ~we~I~~yI~~-q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h-~l~~~DIe~Mk~ls------~~vNlIPVI~K 171 (373)
T COG5019 101 CWEPIVDYIDD-QFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-H-GLKPLDIEAMKRLS------KRVNLIPVIAK 171 (373)
T ss_pred cHHHHHHHHHH-HHHHHHHHhhccccccccccCceEEEEEEecCCC-C-CCCHHHHHHHHHHh------cccCeeeeeec
Confidence 11 111121 13688999887654 1 13232222222221 11778889999
Q ss_pred CCccCCCCHHHHHHHHHHHHHH
Q psy1914 126 QDQTLAKSSSVVKTLLQKELNL 147 (211)
Q Consensus 126 ~Dl~~~~~~~~~~~~l~~~~~~ 147 (211)
+|.....+.....+.+.+.+..
T Consensus 172 aD~lT~~El~~~K~~I~~~i~~ 193 (373)
T COG5019 172 ADTLTDDELAEFKERIREDLEQ 193 (373)
T ss_pred cccCCHHHHHHHHHHHHHHHHH
Confidence 9999887777666666665543
No 336
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.82 E-value=1.4e-08 Score=73.71 Aligned_cols=87 Identities=14% Similarity=0.058 Sum_probs=52.9
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccc
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQL 156 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (211)
+.++|.+++|+|++++.... ...+.+.+... ..++|+++|+||+|+.+.. .....+. .+..
T Consensus 6 l~~aD~il~VvD~~~p~~~~---~~~i~~~l~~~---~~~~p~ilVlNKiDl~~~~---~~~~~~~-~~~~--------- 66 (157)
T cd01858 6 IDSSDVVIQVLDARDPMGTR---CKHVEEYLKKE---KPHKHLIFVLNKCDLVPTW---VTARWVK-ILSK--------- 66 (157)
T ss_pred hhhCCEEEEEEECCCCcccc---CHHHHHHHHhc---cCCCCEEEEEEchhcCCHH---HHHHHHH-HHhc---------
Confidence 56799999999998863211 12233333221 1238999999999996432 1111111 1110
Q ss_pred ccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 157 EDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....++.+||++|.| +++|.++|.+
T Consensus 67 -------------------------~~~~~~~~iSa~~~~~---~~~L~~~l~~ 92 (157)
T cd01858 67 -------------------------EYPTIAFHASINNPFG---KGSLIQLLRQ 92 (157)
T ss_pred -------------------------CCcEEEEEeecccccc---HHHHHHHHHH
Confidence 0112357799999999 9999998864
No 337
>PRK12289 GTPase RsgA; Reviewed
Probab=98.82 E-value=1.8e-08 Score=81.99 Aligned_cols=90 Identities=14% Similarity=0.069 Sum_probs=59.6
Q ss_pred HHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhc
Q psy1914 73 FDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTK 152 (211)
Q Consensus 73 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 152 (211)
.+..+.++|.+++|+|+.++......+.+++..... .++|+++|+||+||..... .. .+.+.+.
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~------~~ip~ILVlNK~DLv~~~~---~~-~~~~~~~------ 146 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES------TGLEIVLCLNKADLVSPTE---QQ-QWQDRLQ------ 146 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH------CCCCEEEEEEchhcCChHH---HH-HHHHHHH------
Confidence 334567899999999998765334445566554421 2389999999999963321 11 1111121
Q ss_pred ccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 153 SNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+.++.+||++|+| +++|+++|..
T Consensus 147 -----------------------------~~g~~v~~iSA~tg~G---I~eL~~~L~~ 172 (352)
T PRK12289 147 -----------------------------QWGYQPLFISVETGIG---LEALLEQLRN 172 (352)
T ss_pred -----------------------------hcCCeEEEEEcCCCCC---HHHHhhhhcc
Confidence 1115678899999999 9999998753
No 338
>KOG3887|consensus
Probab=98.80 E-value=2e-07 Score=70.65 Aligned_cols=129 Identities=15% Similarity=0.186 Sum_probs=75.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc----cccceeeEEEEecCceEEEEECCCchhhhh-h-hHHHhhhcCCEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC----TSLKENVGNFTYEKKNIKIVDLPGEDRLRN-K-FFDQYKSSAKGIV 84 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~-~~~~~~~~~d~ii 84 (211)
+++|+++|...|||||+-+-...+-.+... .|-.+...++.-.-..+.+||.||+..+-. . =....++++-++|
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 477999999999999998766653322211 111111111111111789999999954311 0 0233578899999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHH
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQ 142 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~ 142 (211)
+|+|+.+ . +.+....+........--++++.+=+.+.|.|-.......+.+..+.
T Consensus 107 fvIDaQd--d-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~ 161 (347)
T KOG3887|consen 107 FVIDAQD--D-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIH 161 (347)
T ss_pred EEEechH--H-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHH
Confidence 9999966 2 33333333333333223345688999999999876554433333333
No 339
>PRK00098 GTPase RsgA; Reviewed
Probab=98.76 E-value=3.9e-08 Score=78.68 Aligned_cols=86 Identities=10% Similarity=0.073 Sum_probs=56.1
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccc
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQL 156 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (211)
..++|.+++|+|+.++........+|+..+.. .++|+++|+||+||.+.. .... .+.+.+.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~------~~ip~iIVlNK~DL~~~~--~~~~-~~~~~~~---------- 138 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA------NGIKPIIVLNKIDLLDDL--EEAR-ELLALYR---------- 138 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH------CCCCEEEEEEhHHcCCCH--HHHH-HHHHHHH----------
Confidence 47799999999998765433334455444322 238999999999996321 1111 1111111
Q ss_pred ccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 157 EDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
....+++.+||++|+| +++|+++|.
T Consensus 139 -------------------------~~g~~v~~vSA~~g~g---i~~L~~~l~ 163 (298)
T PRK00098 139 -------------------------AIGYDVLELSAKEGEG---LDELKPLLA 163 (298)
T ss_pred -------------------------HCCCeEEEEeCCCCcc---HHHHHhhcc
Confidence 0115778999999999 999998874
No 340
>KOG1491|consensus
Probab=98.76 E-value=3.4e-08 Score=78.05 Aligned_cols=85 Identities=22% Similarity=0.267 Sum_probs=62.0
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecC--------------c---eEEEEECCC
Q psy1914 5 KFRKSSQKVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEK--------------K---NIKIVDLPG 64 (211)
Q Consensus 5 ~~~~~~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~--------------~---~~~i~D~~G 64 (211)
..|...++++.|+|.+|||||||+|.|+.... ...+| |+.++...+.+.+ . .++++|++|
T Consensus 14 ~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAG 93 (391)
T KOG1491|consen 14 LGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAG 93 (391)
T ss_pred ccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecc
Confidence 34556789999999999999999999998765 45554 7777777665432 1 789999998
Q ss_pred chh-------hhhhhHHHhhhcCCEEEEEEeCC
Q psy1914 65 EDR-------LRNKFFDQYKSSAKGIVYVLDSS 90 (211)
Q Consensus 65 ~~~-------~~~~~~~~~~~~~d~ii~v~d~~ 90 (211)
.-. .-..+. ..++.+|+++.|+++.
T Consensus 94 LvkGAs~G~GLGN~FL-s~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 94 LVKGASAGEGLGNKFL-SHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcccCcCchHHHH-HhhhhccceeEEEEec
Confidence 632 122122 2357799999999875
No 341
>KOG1486|consensus
Probab=98.75 E-value=1.6e-07 Score=71.59 Aligned_cols=87 Identities=28% Similarity=0.333 Sum_probs=62.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecCceEEEEECCCchhhhhhh------HHHhhh
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKF------FDQYKS 78 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------~~~~~~ 78 (211)
+....||+++|.|.+|||||+..++.-.. ...+ .|...-.+.+.+++..+++.|+||.-.-..+- .-...+
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEee
Confidence 34568999999999999999999986443 2222 45555567789999999999999974322110 111235
Q ss_pred cCCEEEEEEeCCCchh
Q psy1914 79 SAKGIVYVLDSSTVQK 94 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~ 94 (211)
.+|.+++|+|++..+.
T Consensus 139 taDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 139 TADLILMVLDATKSED 154 (364)
T ss_pred cccEEEEEecCCcchh
Confidence 6899999999987543
No 342
>KOG1954|consensus
Probab=98.73 E-value=1.9e-07 Score=74.83 Aligned_cols=116 Identities=18% Similarity=0.294 Sum_probs=74.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc----cccceeeEEE-------------------Ee--------------
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC----TSLKENVGNF-------------------TY-------------- 52 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~----~t~~~~~~~~-------------------~~-------------- 52 (211)
.++=|+++|.-..||||+++.|+..+++.-. ||+..-+..+ ++
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 3567999999999999999999998875322 4433222111 01
Q ss_pred -----cC---ceEEEEECCCchh-----------hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcC
Q psy1914 53 -----EK---KNIKIVDLPGEDR-----------LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQ 113 (211)
Q Consensus 53 -----~~---~~~~i~D~~G~~~-----------~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (211)
.+ ..++++||||.-+ |.. ...-+..++|.||++||+...+- -++..+.+..+..+
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~-v~~WFaeR~D~IiLlfD~hKLDI-sdEf~~vi~aLkG~---- 210 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTG-VLEWFAERVDRIILLFDAHKLDI-SDEFKRVIDALKGH---- 210 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHH-HHHHHHHhccEEEEEechhhccc-cHHHHHHHHHhhCC----
Confidence 01 1799999999732 222 23335678999999999976332 23344443443322
Q ss_pred CCCCcEEEEEeCCCccCCCC
Q psy1914 114 SSRVNILVCCNKQDQTLAKS 133 (211)
Q Consensus 114 ~~~~p~iiv~nK~Dl~~~~~ 133 (211)
.-.+=+|+||+|..+..+
T Consensus 211 --EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 211 --EDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred --cceeEEEeccccccCHHH
Confidence 245778899999875544
No 343
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.72 E-value=5.6e-08 Score=70.34 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=49.3
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHH-HHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy1914 81 KGIVYVLDSSTVQKTLRDVAESLY-VILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
|++++|+|+.++..... .++. ..+.. .++|+++|+||+|+... ......+. .+..
T Consensus 1 Dvvl~VvD~~~p~~~~~---~~i~~~~~~~-----~~~p~IiVlNK~Dl~~~---~~~~~~~~-~~~~------------ 56 (155)
T cd01849 1 DVILEVLDARDPLGTRS---PDIERVLIKE-----KGKKLILVLNKADLVPK---EVLRKWLA-YLRH------------ 56 (155)
T ss_pred CEEEEEEeccCCccccC---HHHHHHHHhc-----CCCCEEEEEechhcCCH---HHHHHHHH-HHHh------------
Confidence 68999999988654221 1222 22221 23899999999999643 11111111 1110
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
.....++.+||++|.| +++|.+.|.
T Consensus 57 ----------------------~~~~~ii~vSa~~~~g---i~~L~~~i~ 81 (155)
T cd01849 57 ----------------------SYPTIPFKISATNGQG---IEKKESAFT 81 (155)
T ss_pred ----------------------hCCceEEEEeccCCcC---hhhHHHHHH
Confidence 0014668899999999 999998874
No 344
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.71 E-value=6.2e-08 Score=71.25 Aligned_cols=96 Identities=16% Similarity=0.081 Sum_probs=57.5
Q ss_pred CCCchh-hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHH
Q psy1914 62 LPGEDR-LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTL 140 (211)
Q Consensus 62 ~~G~~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 140 (211)
.|||.. ...+ ....+.++|.+++|+|++++...... .+...+ .+ .|+++|+||+|+.+. ......
T Consensus 2 ~~~~~~~~~~~-~~~~i~~aD~il~v~D~~~~~~~~~~---~i~~~~-----~~--k~~ilVlNK~Dl~~~---~~~~~~ 67 (171)
T cd01856 2 FPGHMAKALRQ-IKEKLKLVDLVIEVRDARIPLSSRNP---LLEKIL-----GN--KPRIIVLNKADLADP---KKTKKW 67 (171)
T ss_pred CchHHHHHHHH-HHHHHhhCCEEEEEeeccCccCcCCh---hhHhHh-----cC--CCEEEEEehhhcCCh---HHHHHH
Confidence 466632 2332 34456789999999999875432111 112221 12 789999999999532 111111
Q ss_pred HHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 141 LQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 141 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+ +.+.. ....++.+||++|+| +++|.+.|.+
T Consensus 68 ~-~~~~~-----------------------------------~~~~vi~iSa~~~~g---i~~L~~~l~~ 98 (171)
T cd01856 68 L-KYFES-----------------------------------KGEKVLFVNAKSGKG---VKKLLKAAKK 98 (171)
T ss_pred H-HHHHh-----------------------------------cCCeEEEEECCCccc---HHHHHHHHHH
Confidence 1 11110 003568899999999 9999988764
No 345
>KOG2655|consensus
Probab=98.70 E-value=2.9e-07 Score=74.14 Aligned_cols=129 Identities=17% Similarity=0.266 Sum_probs=78.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccc--------c--cccceeeEEEEec--Cc--eEEEEECCCchhh-------
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFES--------C--TSLKENVGNFTYE--KK--NIKIVDLPGEDRL------- 68 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~--------~--~t~~~~~~~~~~~--~~--~~~i~D~~G~~~~------- 68 (211)
-.+.++++|.+|.|||||+|.|+....... . .|.........+. +. .++++||||....
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 358999999999999999999997754332 1 1333333333332 33 8899999997311
Q ss_pred ------hhhhHHHhh-----------h--cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 69 ------RNKFFDQYK-----------S--SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 69 ------~~~~~~~~~-----------~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
-..-...|+ . +.++++|.+..+.. .+....-.+.+-+. ..+.+|-|+.|+|..
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh--gL~p~Di~~Mk~l~------~~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH--GLKPLDIEFMKKLS------KKVNLIPVIAKADTL 171 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC--CCcHhhHHHHHHHh------ccccccceeeccccC
Confidence 000112222 1 47888888876541 13333222222221 127888999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy1914 130 LAKSSSVVKTLLQKELN 146 (211)
Q Consensus 130 ~~~~~~~~~~~l~~~~~ 146 (211)
...+.......+.+.+.
T Consensus 172 T~~El~~~K~~I~~~i~ 188 (366)
T KOG2655|consen 172 TKDELNQFKKRIRQDIE 188 (366)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 88777666666665554
No 346
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.69 E-value=6.8e-08 Score=71.05 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=40.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc--cccceeeEEEEecCceEEEEECCCc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC--TSLKENVGNFTYEKKNIKIVDLPGE 65 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
...++++++|.+|+|||||+|++.+..+.... +.++.....+.++ ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 34579999999999999999999987753322 3333334444554 46899999995
No 347
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.69 E-value=3.8e-08 Score=73.62 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=38.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc----------ccccccceeeEEEEecCceEEEEECCCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYF----------ESCTSLKENVGNFTYEKKNIKIVDLPGE 65 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~----------~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
.+.+++++|.+|+|||||+|+|.+.... ...|.++.....+.++. .+.++||||.
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcCC
Confidence 3468999999999999999999975431 12233333333444433 6899999994
No 348
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.68 E-value=8e-08 Score=69.52 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=39.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEE--EEecCceEEEEECCCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGN--FTYEKKNIKIVDLPGE 65 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~D~~G~ 65 (211)
...+++++|.+|+||||++|++.+.......++.+..... +.. +..+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI-TSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc-CCCEEEEECcCC
Confidence 4678999999999999999999976654444444433221 222 337999999994
No 349
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.67 E-value=7.2e-08 Score=76.75 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=41.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc--cccceeeEEEEecCceEEEEECCCch
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC--TSLKENVGNFTYEKKNIKIVDLPGED 66 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~ 66 (211)
...++++++|.+|||||||+|+|.+....... |.++.....+..+ ..+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG-KGLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC-CcEEEEECCCcC
Confidence 35689999999999999999999987653333 3333333334443 368999999973
No 350
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.66 E-value=7e-08 Score=76.42 Aligned_cols=56 Identities=18% Similarity=0.287 Sum_probs=40.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc--ccccceeeEEEEecCceEEEEECCCc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES--CTSLKENVGNFTYEKKNIKIVDLPGE 65 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
...++++++|.+|+|||||+|+|.+...... .|.++.....+.+. ..+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 4568999999999999999999998764332 33333333344443 36899999998
No 351
>KOG0459|consensus
Probab=98.65 E-value=3.5e-08 Score=79.62 Aligned_cols=166 Identities=17% Similarity=0.183 Sum_probs=101.8
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCc------------------ccc----------------cccccceeeEEEE
Q psy1914 6 FRKSSQKVVLLSGLSLSGKTLLFARLVYSK------------------YFE----------------SCTSLKENVGNFT 51 (211)
Q Consensus 6 ~~~~~~~ki~i~G~~~~GKSsli~~l~~~~------------------~~~----------------~~~t~~~~~~~~~ 51 (211)
...+.+++++++|...+||||+-..+.... -.+ ...|++.....++
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 345778999999999999999887775311 000 0023333444566
Q ss_pred ecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCc--hhhHHH---HHHHHHHHHcCcCcCCCCCcEEEEEeCC
Q psy1914 52 YEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTV--QKTLRD---VAESLYVILADPQVQSSRVNILVCCNKQ 126 (211)
Q Consensus 52 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 126 (211)
...+++++.|.|||..|..++.... .++|.-++|+.+... +..|+. .++..... ..... ...++++||+
T Consensus 154 te~~~ftiLDApGHk~fv~nmI~Ga-sqAD~~vLvisar~gefetgFerGgQTREha~La---kt~gv--~~lVv~vNKM 227 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFVPNMIGGA-SQADLAVLVISARKGEFETGFEKGGQTREHAMLA---KTAGV--KHLIVLINKM 227 (501)
T ss_pred ecceeEEeeccCcccccchhhcccc-chhhhhhhhhhhhhchhhcccccccchhHHHHHH---Hhhcc--ceEEEEEEec
Confidence 6677999999999999998765544 448999999887431 222222 22211111 11122 5689999999
Q ss_pred CccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHH
Q psy1914 127 DQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQ 205 (211)
Q Consensus 127 Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~ 205 (211)
|-+......+.-++...++..... ....+ .-....+++||..+|.+ +++..
T Consensus 228 ddPtvnWs~eRy~E~~~k~~~fLr--~~g~n-----------------------~~~d~~f~p~sg~tG~~---~k~~~ 278 (501)
T KOG0459|consen 228 DDPTVNWSNERYEECKEKLQPFLR--KLGFN-----------------------PKPDKHFVPVSGLTGAN---VKDRT 278 (501)
T ss_pred cCCccCcchhhHHHHHHHHHHHHH--Hhccc-----------------------CCCCceeeecccccccc---hhhcc
Confidence 988766655555554444432111 11100 12337889999999998 76543
No 352
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.65 E-value=3.8e-07 Score=74.27 Aligned_cols=78 Identities=23% Similarity=0.158 Sum_probs=58.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-c-ccc--cccceeeEEEEecCc-----------------eEEEEECCCchh---
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-F-ESC--TSLKENVGNFTYEKK-----------------NIKIVDLPGEDR--- 67 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~-~~~--~t~~~~~~~~~~~~~-----------------~~~i~D~~G~~~--- 67 (211)
++++++|.||+|||||+|+|++... . ..+ .|+.++.+.+.+.+. .+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998765 2 334 356677777766541 688999999733
Q ss_pred ----hhhhhHHHhhhcCCEEEEEEeCC
Q psy1914 68 ----LRNKFFDQYKSSAKGIVYVLDSS 90 (211)
Q Consensus 68 ----~~~~~~~~~~~~~d~ii~v~d~~ 90 (211)
.... .-..++.+|++++|+|+.
T Consensus 83 ~g~Glgn~-fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQ-FLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchH-HHHHHHhCCEEEEEEeCC
Confidence 2222 333467799999999985
No 353
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.64 E-value=1.5e-07 Score=74.86 Aligned_cols=86 Identities=10% Similarity=0.055 Sum_probs=57.8
Q ss_pred hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccc
Q psy1914 76 YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (211)
.+.++|.+++|+|+.++..++....+|+..+.. .++|+++|+||+||.+.. .. .. ......
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~------~~ip~iIVlNK~DL~~~~--~~-~~-~~~~~~--------- 135 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA------AGIEPVIVLTKADLLDDE--EE-EL-ELVEAL--------- 135 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH------cCCCEEEEEEHHHCCChH--HH-HH-HHHHHH---------
Confidence 356799999999998865235566666654432 238999999999996441 11 11 110011
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
....+++.+||++|.| +++|.++|.
T Consensus 136 --------------------------~~g~~v~~vSA~~g~g---i~~L~~~L~ 160 (287)
T cd01854 136 --------------------------ALGYPVLAVSAKTGEG---LDELREYLK 160 (287)
T ss_pred --------------------------hCCCeEEEEECCCCcc---HHHHHhhhc
Confidence 0115778899999999 999998875
No 354
>KOG0467|consensus
Probab=98.63 E-value=9.1e-07 Score=76.57 Aligned_cols=110 Identities=16% Similarity=0.150 Sum_probs=73.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc--cc-------------cccccce--eeEEEEe--cCceEEEEECCCchhhhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY--FE-------------SCTSLKE--NVGNFTY--EKKNIKIVDLPGEDRLRN 70 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~--~~-------------~~~t~~~--~~~~~~~--~~~~~~i~D~~G~~~~~~ 70 (211)
.-.++.++-....|||||...|....- .. +..+.|. ....+.+ ++..++++|+|||-+|..
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~s 87 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSS 87 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhh
Confidence 345788999999999999999985331 11 1112222 1222323 455899999999999998
Q ss_pred hhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 71 KFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 71 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
+ .....+-+|+.++++|+...- ..++...++....+ + ...++|+||+|.
T Consensus 88 e-vssas~l~d~alvlvdvvegv--~~qt~~vlrq~~~~----~--~~~~lvinkidr 136 (887)
T KOG0467|consen 88 E-VSSASRLSDGALVLVDVVEGV--CSQTYAVLRQAWIE----G--LKPILVINKIDR 136 (887)
T ss_pred h-hhhhhhhcCCcEEEEeecccc--chhHHHHHHHHHHc----c--CceEEEEehhhh
Confidence 5 555666799999999997633 23444444443322 2 667899999995
No 355
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.63 E-value=2.4e-07 Score=76.05 Aligned_cols=99 Identities=20% Similarity=0.219 Sum_probs=63.8
Q ss_pred chhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC-HHHHHHHHHH
Q psy1914 65 EDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS-SSVVKTLLQK 143 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~l~~ 143 (211)
.+.|.. +...+.+.++++++|+|+.+...+. ...+.+.+. +.|+++|+||+|+.+... .....+.+.+
T Consensus 50 ~e~f~~-~l~~~~~~~~~Il~VvD~~d~~~s~---~~~l~~~~~-------~~piilV~NK~DLl~k~~~~~~~~~~l~~ 118 (360)
T TIGR03597 50 DDDFLN-LLNSLGDSNALIVYVVDIFDFEGSL---IPELKRFVG-------GNPVLLVGNKIDLLPKSVNLSKIKEWMKK 118 (360)
T ss_pred HHHHHH-HHhhcccCCcEEEEEEECcCCCCCc---cHHHHHHhC-------CCCEEEEEEchhhCCCCCCHHHHHHHHHH
Confidence 456777 6777888899999999998755322 222233221 279999999999975432 2333333322
Q ss_pred HHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCC-cEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 144 ELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYN-QVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..... .. ...++.+||++|.| ++++++.|.+
T Consensus 119 ~~k~~---------------------------------g~~~~~i~~vSAk~g~g---v~eL~~~l~~ 150 (360)
T TIGR03597 119 RAKEL---------------------------------GLKPVDIILVSAKKGNG---IDELLDKIKK 150 (360)
T ss_pred HHHHc---------------------------------CCCcCcEEEecCCCCCC---HHHHHHHHHH
Confidence 22210 00 02468899999999 9999998864
No 356
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.60 E-value=9e-08 Score=77.26 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=41.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc--cccceeeEEEEecCceEEEEECCCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC--TSLKENVGNFTYEKKNIKIVDLPGE 65 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
...+++++|.+|||||||||+|.+.....+. |.++-....+..+. .+.++||||.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~-~i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD-GIYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC-CeEEecCCCc
Confidence 4588999999999999999999998764444 43333333444443 5899999997
No 357
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.59 E-value=2.2e-07 Score=73.61 Aligned_cols=96 Identities=16% Similarity=0.108 Sum_probs=58.8
Q ss_pred CCCchh-hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHH
Q psy1914 62 LPGEDR-LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTL 140 (211)
Q Consensus 62 ~~G~~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 140 (211)
.|||.. ... -....+..+|++++|+|+.++..... ..+...+. + .|+++|+||+|+.+.. ....
T Consensus 4 fpgHm~k~~~-~~~~~l~~aDvVl~V~Dar~p~~~~~---~~i~~~l~-----~--kp~IiVlNK~DL~~~~---~~~~- 68 (276)
T TIGR03596 4 FPGHMAKARR-EIKEKLKLVDVVIEVLDARIPLSSRN---PMIDEIRG-----N--KPRLIVLNKADLADPA---VTKQ- 68 (276)
T ss_pred ChHHHHHHHH-HHHHHHhhCCEEEEEEeCCCCCCCCC---hhHHHHHC-----C--CCEEEEEEccccCCHH---HHHH-
Confidence 578743 233 24556778999999999987543221 12223321 2 7999999999995321 1111
Q ss_pred HHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 141 LQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 141 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.+.. ....++.+||++|.| +++|.+.|.+
T Consensus 69 ~~~~~~~-----------------------------------~~~~vi~iSa~~~~g---i~~L~~~i~~ 100 (276)
T TIGR03596 69 WLKYFEE-----------------------------------KGIKALAINAKKGKG---VKKIIKAAKK 100 (276)
T ss_pred HHHHHHH-----------------------------------cCCeEEEEECCCccc---HHHHHHHHHH
Confidence 1111110 003567899999999 9999887754
No 358
>PRK12288 GTPase RsgA; Reviewed
Probab=98.58 E-value=4.8e-07 Score=73.68 Aligned_cols=87 Identities=15% Similarity=0.078 Sum_probs=58.0
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
.++|.+++|++.. +..++..+..|+.... . .++|+++|+||+||.+..........+ +.+.
T Consensus 119 ANvD~vlIV~s~~-p~~s~~~Ldr~L~~a~-~-----~~i~~VIVlNK~DL~~~~~~~~~~~~~-~~y~----------- 179 (347)
T PRK12288 119 ANIDQIVIVSAVL-PELSLNIIDRYLVACE-T-----LGIEPLIVLNKIDLLDDEGRAFVNEQL-DIYR----------- 179 (347)
T ss_pred EEccEEEEEEeCC-CCCCHHHHHHHHHHHH-h-----cCCCEEEEEECccCCCcHHHHHHHHHH-HHHH-----------
Confidence 4589999999875 4555777777766432 1 238999999999997543222212111 1111
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++.+||++|+| +++|+++|..
T Consensus 180 ------------------------~~g~~v~~vSA~tg~G---ideL~~~L~~ 205 (347)
T PRK12288 180 ------------------------NIGYRVLMVSSHTGEG---LEELEAALTG 205 (347)
T ss_pred ------------------------hCCCeEEEEeCCCCcC---HHHHHHHHhh
Confidence 0115779999999999 9999999853
No 359
>KOG0705|consensus
Probab=98.58 E-value=1.6e-07 Score=78.45 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=82.2
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEE-EEecCc--eEEEEECCCchhhhhhhHHHhhhcCC
Q psy1914 5 KFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAK 81 (211)
Q Consensus 5 ~~~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d 81 (211)
..++-+++|+.|+|..++|||+|+.+++.+.+.....+.+..+.. +..++. .+.+.|-+|+.... |-..+|
T Consensus 24 lsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~aQ------ft~wvd 97 (749)
T KOG0705|consen 24 LSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDAQ------FCQWVD 97 (749)
T ss_pred eecccchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCchhh------hhhhcc
Confidence 356678999999999999999999999999998777666665554 333333 67778888854322 334589
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
++|+||..-+.+ +++.+..+...+..... ...+|+++++++.-.
T Consensus 98 avIfvf~~~d~~-s~q~v~~l~~~l~~~r~--r~~i~l~lvgtqd~i 141 (749)
T KOG0705|consen 98 AVVFVFSVEDEQ-SFQAVQALAHEMSSYRN--ISDLPLILVGTQDHI 141 (749)
T ss_pred ceEEEEEecccc-CHHHHHHHHhhcccccc--cccchHHhhcCcchh
Confidence 999999987744 47666666555544333 234899999986444
No 360
>KOG0448|consensus
Probab=98.57 E-value=1.7e-06 Score=74.21 Aligned_cols=116 Identities=20% Similarity=0.272 Sum_probs=72.2
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccccc--cccccee-------------------------------------
Q psy1914 6 FRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFES--CTSLKEN------------------------------------- 46 (211)
Q Consensus 6 ~~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~--~~t~~~~------------------------------------- 46 (211)
+..+.+.||+|.|..++||||++|+++..+..+. .+++..-
T Consensus 104 ~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~ 183 (749)
T KOG0448|consen 104 VLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPD 183 (749)
T ss_pred HHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcc
Confidence 3456789999999999999999999997663211 1111000
Q ss_pred -------eEEEEec-C------ceEEEEECCCchh---hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHH-HHHHHHHHc
Q psy1914 47 -------VGNFTYE-K------KNIKIVDLPGEDR---LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDV-AESLYVILA 108 (211)
Q Consensus 47 -------~~~~~~~-~------~~~~i~D~~G~~~---~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~ 108 (211)
...+-++ + ..+.++|.||... ... ....+..++|++|+|+.+-+ .+... .+++...-.
T Consensus 184 ~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~ts-wid~~cldaDVfVlV~NaEn---tlt~sek~Ff~~vs~ 259 (749)
T KOG0448|consen 184 KDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTS-WIDSFCLDADVFVLVVNAEN---TLTLSEKQFFHKVSE 259 (749)
T ss_pred cccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhH-HHHHHhhcCCeEEEEecCcc---HhHHHHHHHHHHhhc
Confidence 0000111 1 1678899999742 333 34556677999999998844 34333 344444322
Q ss_pred CcCcCCCCCcEEEEEeCCCccCC
Q psy1914 109 DPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 109 ~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
. +..++|+-||+|....
T Consensus 260 ~------KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 260 E------KPNIFILNNKWDASAS 276 (749)
T ss_pred c------CCcEEEEechhhhhcc
Confidence 1 2668888899998644
No 361
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.57 E-value=1.8e-07 Score=67.69 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=39.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--cccccccceeeEEEEecCceEEEEECCCc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSLKENVGNFTYEKKNIKIVDLPGE 65 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
....+++++|.+|+|||||+|++.+... ....+.++.....+.++ ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD-NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec-CCEEEEECCCC
Confidence 4568899999999999999999998653 22223332223333333 47899999994
No 362
>KOG0466|consensus
Probab=98.57 E-value=4.9e-08 Score=76.27 Aligned_cols=157 Identities=14% Similarity=0.180 Sum_probs=94.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc---cccc---cccceeeE--E-EEe----------------------------
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY---FESC---TSLKENVG--N-FTY---------------------------- 52 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~---~~~~---~t~~~~~~--~-~~~---------------------------- 52 (211)
--++|.-+|....||||+++++.+-.. ...- .|+...+. . +.+
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 357899999999999999999986321 1000 11110000 0 000
Q ss_pred -cC-----ceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHH--HHcCcCcCCCCCcEEEEEe
Q psy1914 53 -EK-----KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYV--ILADPQVQSSRVNILVCCN 124 (211)
Q Consensus 53 -~~-----~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~iiv~n 124 (211)
.+ ..+.++|+|||+-....+.... .-.|+.++++.++.++. ..+..+.+.. +++ + ..++++-|
T Consensus 117 ~~~~~klvRHVSfVDCPGHDiLMaTMLnGa-AvmDaalLlIA~NEsCP-QPQTsEHLaaveiM~---L----khiiilQN 187 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHDILMATMLNGA-AVMDAALLLIAGNESCP-QPQTSEHLAAVEIMK---L----KHIIILQN 187 (466)
T ss_pred CCCceEEEEEEEeccCCchHHHHHHHhcch-HHhhhhhhhhhcCCCCC-CCchhhHHHHHHHhh---h----ceEEEEec
Confidence 01 1688999999987655333222 22577888887766432 2233333322 222 1 56899999
Q ss_pred CCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHH
Q psy1914 125 KQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQL 204 (211)
Q Consensus 125 K~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l 204 (211)
|+||.......+..+++.+.+. -.. ....+++++||.-+.+ |+.+
T Consensus 188 KiDli~e~~A~eq~e~I~kFi~---~t~-----------------------------ae~aPiiPisAQlkyN---Id~v 232 (466)
T KOG0466|consen 188 KIDLIKESQALEQHEQIQKFIQ---GTV-----------------------------AEGAPIIPISAQLKYN---IDVV 232 (466)
T ss_pred hhhhhhHHHHHHHHHHHHHHHh---ccc-----------------------------cCCCceeeehhhhccC---hHHH
Confidence 9999876655544444433222 111 1125789999999999 9999
Q ss_pred HHHHhh
Q psy1914 205 QDWMVT 210 (211)
Q Consensus 205 ~~~i~~ 210 (211)
.++|.+
T Consensus 233 ~eyivk 238 (466)
T KOG0466|consen 233 CEYIVK 238 (466)
T ss_pred HHHHHh
Confidence 999975
No 363
>KOG1707|consensus
Probab=98.57 E-value=6.1e-07 Score=75.60 Aligned_cols=115 Identities=13% Similarity=0.142 Sum_probs=72.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
++-+++.++|+.++|||.+++++.++.+.... .+.... +..+...+. .+.+-|.+-. .... +...- ..||++
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~-l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDF-LTSKE-AACDVA 499 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-cccc-ccCcc-ceeeeE
Confidence 34578999999999999999999998875533 233322 222333333 6667676643 1111 11111 459999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK 132 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 132 (211)
+++||++++.+ +.-.......--. . .++|+++|++|+|+....
T Consensus 500 ~~~YDsS~p~s-f~~~a~v~~~~~~---~--~~~Pc~~va~K~dlDe~~ 542 (625)
T KOG1707|consen 500 CLVYDSSNPRS-FEYLAEVYNKYFD---L--YKIPCLMVATKADLDEVP 542 (625)
T ss_pred EEecccCCchH-HHHHHHHHHHhhh---c--cCCceEEEeeccccchhh
Confidence 99999998665 4333332222211 1 349999999999997654
No 364
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=9e-07 Score=74.58 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=71.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
.+.+-++++||+|+|||||+..|...-...+...+...+..+.-+...+++..+|. .... +..- .+-+|.+++.+|
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~--Dl~~-miDv-aKIaDLVlLlId 142 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPS--DLHQ-MIDV-AKIADLVLLLID 142 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChH--HHHH-HHhH-HHhhheeEEEec
Confidence 35678889999999999999999874433333222222333333334899999993 3333 3332 344899999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 133 (211)
+.-.-. -++.+++ .++....+ .-++-|+|..||....+
T Consensus 143 gnfGfE--METmEFL-nil~~HGm----PrvlgV~ThlDlfk~~s 180 (1077)
T COG5192 143 GNFGFE--METMEFL-NILISHGM----PRVLGVVTHLDLFKNPS 180 (1077)
T ss_pred cccCce--ehHHHHH-HHHhhcCC----CceEEEEeecccccChH
Confidence 964221 2344444 44433332 33778999999986544
No 365
>KOG1547|consensus
Probab=98.54 E-value=1.4e-06 Score=66.01 Aligned_cols=128 Identities=22% Similarity=0.263 Sum_probs=73.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc---------c-ccceeeE--EEEecCc--eEEEEECCCchhh-------
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC---------T-SLKENVG--NFTYEKK--NIKIVDLPGEDRL------- 68 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~---------~-t~~~~~~--~~~~~~~--~~~i~D~~G~~~~------- 68 (211)
-.++|+++|.+|.|||||+|.+......... | |+..... .+.-++. +++++||||..+.
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 3689999999999999999999865532211 1 2222221 1233333 8899999997211
Q ss_pred ------hhhhHHHhh------------h--cCCEEEEEEeCCCchhhHHHH-HHHHHHHHcCcCcCCCCCcEEEEEeCCC
Q psy1914 69 ------RNKFFDQYK------------S--SAKGIVYVLDSSTVQKTLRDV-AESLYVILADPQVQSSRVNILVCCNKQD 127 (211)
Q Consensus 69 ------~~~~~~~~~------------~--~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~D 127 (211)
-..-...|+ . ..++++|.+..+. .+ +... .+.+.++..- +.++-|+.|+|
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hs-LrplDieflkrLt~v-------vNvvPVIakaD 195 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HS-LRPLDIEFLKRLTEV-------VNVVPVIAKAD 195 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-Cc-cCcccHHHHHHHhhh-------heeeeeEeecc
Confidence 000011121 1 2577777776653 11 1111 1222333221 56788889999
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q psy1914 128 QTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 128 l~~~~~~~~~~~~l~~~~~ 146 (211)
-..-.+..+..+.+.+++.
T Consensus 196 tlTleEr~~FkqrI~~el~ 214 (336)
T KOG1547|consen 196 TLTLEERSAFKQRIRKELE 214 (336)
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 8877666666666665554
No 366
>KOG0447|consensus
Probab=98.53 E-value=5.8e-06 Score=69.58 Aligned_cols=115 Identities=15% Similarity=0.251 Sum_probs=71.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccc--------cc----------------------------------------
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFES--------CT---------------------------------------- 41 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~--------~~---------------------------------------- 41 (211)
.-+||+++|...+||||.+..+......+. .|
T Consensus 307 hLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~R 386 (980)
T KOG0447|consen 307 HLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELR 386 (980)
T ss_pred cCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHH
Confidence 457999999999999999999886432110 01
Q ss_pred ---------ccceeeEEEEecCc---eEEEEECCCc-------------hhhhhhhHHHhhhcCCEEEEEEeCCCchhhH
Q psy1914 42 ---------SLKENVGNFTYEKK---NIKIVDLPGE-------------DRLRNKFFDQYKSSAKGIVYVLDSSTVQKTL 96 (211)
Q Consensus 42 ---------t~~~~~~~~~~~~~---~~~i~D~~G~-------------~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~ 96 (211)
|....+..++++|- .+.++|+||. +.... +...|+.++++||+|+--...+..-
T Consensus 387 Mr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~-msKayM~NPNAIILCIQDGSVDAER 465 (980)
T KOG0447|consen 387 MRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFS-ISKAYMQNPNAIILCIQDGSVDAER 465 (980)
T ss_pred HHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHH-HHHHHhcCCCeEEEEeccCCcchhh
Confidence 11111222334433 7889999996 23444 6788999999999998332211101
Q ss_pred HHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 97 RDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
..+ .++... +...+.-.|+|++|.|+...
T Consensus 466 SnV----TDLVsq--~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 466 SIV----TDLVSQ--MDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred hhH----HHHHHh--cCCCCCeeEEEEeecchhhh
Confidence 112 222221 22234778999999999765
No 367
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.52 E-value=3.8e-06 Score=64.51 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=56.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--cccc----cccccceeeEEEEec---CceEEEEECCCchhhhh-----hhHH
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS--KYFE----SCTSLKENVGNFTYE---KKNIKIVDLPGEDRLRN-----KFFD 74 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~--~~~~----~~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~-----~~~~ 74 (211)
.+-.-|+++|++++|||+|+|+|.+. .+.. ...|.|......... +..+.++||+|...... ....
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34457899999999999999999988 5421 123555555544443 45899999999743211 1122
Q ss_pred Hhhhc--CCEEEEEEeCCCchh
Q psy1914 75 QYKSS--AKGIVYVLDSSTVQK 94 (211)
Q Consensus 75 ~~~~~--~d~ii~v~d~~~~~~ 94 (211)
..+.. ++.+|+..+......
T Consensus 85 ~~l~~llss~~i~n~~~~~~~~ 106 (224)
T cd01851 85 FALATLLSSVLIYNSWETILGD 106 (224)
T ss_pred HHHHHHHhCEEEEeccCcccHH
Confidence 22233 799999988865443
No 368
>PRK14974 cell division protein FtsY; Provisional
Probab=98.46 E-value=2.6e-06 Score=69.02 Aligned_cols=68 Identities=12% Similarity=0.126 Sum_probs=39.5
Q ss_pred ceEEEEECCCchhhhhhhH---HHhh--hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 55 KNIKIVDLPGEDRLRNKFF---DQYK--SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~---~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
..+.++||+|.......+. ..+. -.++.+++|+|+...+....++.. +.... -+--+++||.|..
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~-f~~~~---------~~~giIlTKlD~~ 292 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE-FNEAV---------GIDGVILTKVDAD 292 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH-HHhcC---------CCCEEEEeeecCC
Confidence 3789999999743221111 1111 247899999999765443333322 22211 2346788999986
Q ss_pred CCC
Q psy1914 130 LAK 132 (211)
Q Consensus 130 ~~~ 132 (211)
..-
T Consensus 293 ~~~ 295 (336)
T PRK14974 293 AKG 295 (336)
T ss_pred CCc
Confidence 443
No 369
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.44 E-value=1.7e-06 Score=62.79 Aligned_cols=63 Identities=13% Similarity=0.210 Sum_probs=37.1
Q ss_pred eEEEEECCCchhhhhhhHHHh--------hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCC
Q psy1914 56 NIKIVDLPGEDRLRNKFFDQY--------KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQD 127 (211)
Q Consensus 56 ~~~i~D~~G~~~~~~~~~~~~--------~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 127 (211)
...++|+||...... ....+ .-..+.+++++|+......+... ..+...+. .++ ++++||+|
T Consensus 88 d~I~IEt~G~~~p~~-~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~-~~~~~Qi~---~ad-----~ivlnk~d 157 (158)
T cd03112 88 DRIVIETTGLADPGP-VAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQ-TEAQSQIA---FAD-----RILLNKTD 157 (158)
T ss_pred CEEEEECCCcCCHHH-HHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhcc-HHHHHHHH---HCC-----EEEEeccc
Confidence 678899999864433 22221 12378999999997644433222 22333332 122 56899999
Q ss_pred c
Q psy1914 128 Q 128 (211)
Q Consensus 128 l 128 (211)
+
T Consensus 158 l 158 (158)
T cd03112 158 L 158 (158)
T ss_pred C
Confidence 6
No 370
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.43 E-value=3.6e-07 Score=65.99 Aligned_cols=57 Identities=23% Similarity=0.211 Sum_probs=35.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc---------cccceeeEEEEecCceEEEEECCCchhhh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC---------TSLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~---------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
-.++++|++|||||||+|.|.......+. ..++.....+.+.+ ...++||||...+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~-g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD-GGYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT-SEEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC-CcEEEECCCCCccc
Confidence 67899999999999999999986421111 11112233345533 56899999986554
No 371
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.43 E-value=4.5e-06 Score=67.30 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.-.++++|++|+||||++..|..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 346789999999999999999874
No 372
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.42 E-value=8.5e-07 Score=70.65 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=58.9
Q ss_pred CCCchh-hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHH
Q psy1914 62 LPGEDR-LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTL 140 (211)
Q Consensus 62 ~~G~~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 140 (211)
.|||.. ... -....+..+|++++|+|+.++..... ..+...+. +.|+++|+||+|+.+. .....
T Consensus 7 fpgHm~k~~~-~l~~~l~~aDvIL~VvDar~p~~~~~---~~l~~~~~-------~kp~iiVlNK~DL~~~---~~~~~- 71 (287)
T PRK09563 7 FPGHMAKARR-EIKENLKLVDVVIEVLDARIPLSSEN---PMIDKIIG-------NKPRLLILNKSDLADP---EVTKK- 71 (287)
T ss_pred cHHHHHHHHH-HHHHHhhhCCEEEEEEECCCCCCCCC---hhHHHHhC-------CCCEEEEEEchhcCCH---HHHHH-
Confidence 688743 223 24455678999999999987543221 22233322 2799999999999532 11111
Q ss_pred HHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 141 LQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 141 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.+.. ....++.+||+++.| +++|.+.|.+
T Consensus 72 ~~~~~~~-----------------------------------~~~~vi~vSa~~~~g---i~~L~~~l~~ 103 (287)
T PRK09563 72 WIEYFEE-----------------------------------QGIKALAINAKKGQG---VKKILKAAKK 103 (287)
T ss_pred HHHHHHH-----------------------------------cCCeEEEEECCCccc---HHHHHHHHHH
Confidence 1111110 003567899999999 9999887754
No 373
>PRK12288 GTPase RsgA; Reviewed
Probab=98.40 E-value=5.6e-07 Score=73.28 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=36.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc--c-------ccceeeEEEEecCceEEEEECCCchhhh
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC--T-------SLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~--~-------t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
.++|+|.+|||||||+|+|.+.....+. + .++....-+.+.+. ..++||||...+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~-~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG-GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC-CEEEECCCCCccc
Confidence 4799999999999999999976532211 1 11222233444432 3599999986654
No 374
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.38 E-value=1.5e-06 Score=61.79 Aligned_cols=49 Identities=14% Similarity=0.098 Sum_probs=32.8
Q ss_pred HhhhcCCEEEEEEeCCCchhhHH-HHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 75 QYKSSAKGIVYVLDSSTVQKTLR-DVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 75 ~~~~~~d~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
..++++|++++|+|+.++..... ...+++... . .++|+++|+||+|+.+
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~-----~--~~k~~iivlNK~DL~~ 56 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV-----D--PRKKNILLLNKADLLT 56 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc-----c--CCCcEEEEEechhcCC
Confidence 34677999999999988654221 233333221 1 2389999999999964
No 375
>PRK12289 GTPase RsgA; Reviewed
Probab=98.35 E-value=8.9e-07 Score=72.19 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=36.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc--cc-------cceeeEEEEecCceEEEEECCCchhh
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC--TS-------LKENVGNFTYEKKNIKIVDLPGEDRL 68 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~--~t-------~~~~~~~~~~~~~~~~i~D~~G~~~~ 68 (211)
.++|+|++|||||||+|+|.......+. +. ++....-+.+.+. ..++||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g-~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG-GLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC-cEEEeCCCcccc
Confidence 4899999999999999999975532211 11 2223344555432 379999997543
No 376
>KOG0465|consensus
Probab=98.34 E-value=7.2e-07 Score=75.53 Aligned_cols=119 Identities=20% Similarity=0.225 Sum_probs=82.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-------------cccc--------cccceeeEEEEecCceEEEEECCCchhhh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKY-------------FESC--------TSLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~-------------~~~~--------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
-.+|.+.-.-.+||||+-.+.+...- ...+ .|+......+.|.+.+++++|||||..|.
T Consensus 39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence 34688888999999999999873210 0000 11111223356677799999999999988
Q ss_pred hhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHH
Q psy1914 70 NKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVK 138 (211)
Q Consensus 70 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~ 138 (211)
-+ ....++-.|+.++|+|+..... .++...|..+.+ .++|.+..+||+|..++.....+.
T Consensus 119 ~E-VeRALrVlDGaVlvl~aV~GVq--sQt~tV~rQ~~r------y~vP~i~FiNKmDRmGa~~~~~l~ 178 (721)
T KOG0465|consen 119 FE-VERALRVLDGAVLVLDAVAGVE--SQTETVWRQMKR------YNVPRICFINKMDRMGASPFRTLN 178 (721)
T ss_pred EE-ehhhhhhccCeEEEEEccccee--hhhHHHHHHHHh------cCCCeEEEEehhhhcCCChHHHHH
Confidence 75 5667788999999999977443 344444555443 239999999999998876655433
No 377
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.33 E-value=1.3e-05 Score=63.27 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=39.9
Q ss_pred ceEEEEECCCchhhhhhhH---HH---hh-----hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEE
Q psy1914 55 KNIKIVDLPGEDRLRNKFF---DQ---YK-----SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCC 123 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~---~~---~~-----~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~ 123 (211)
..+.++||||......... .. .. ..++.+++|+|++.....+..+..+.... -+.-+++
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~----------~~~g~Il 224 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAV----------GLTGIIL 224 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhC----------CCCEEEE
Confidence 4889999999753222111 11 11 13789999999976544344333222111 2457789
Q ss_pred eCCCccCCC
Q psy1914 124 NKQDQTLAK 132 (211)
Q Consensus 124 nK~Dl~~~~ 132 (211)
||.|.....
T Consensus 225 TKlDe~~~~ 233 (272)
T TIGR00064 225 TKLDGTAKG 233 (272)
T ss_pred EccCCCCCc
Confidence 999985443
No 378
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.33 E-value=1.2e-06 Score=72.03 Aligned_cols=126 Identities=13% Similarity=0.151 Sum_probs=70.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-------cccccccceeeEEEEecCceEEEEECCCchhhhhhhHH--------H
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKY-------FESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFD--------Q 75 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~--------~ 75 (211)
..+++++|.+|||||||+|+|.+... .+..|.++.....+.++ ..+.++||||...... +.. .
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~-~~~~l~DtPG~~~~~~-~~~~l~~~~l~~ 231 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD-DGHSLYDTPGIINSHQ-MAHYLDKKDLKY 231 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC-CCCEEEECCCCCChhH-hhhhcCHHHHhh
Confidence 46899999999999999999997432 22334433344444442 3578999999753321 111 1
Q ss_pred hh--hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHH
Q psy1914 76 YK--SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 76 ~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~ 146 (211)
.. +......+.+|....- +..-..++ +. .......+.+.+++.+..+....+...+.+.+.+.
T Consensus 232 ~~~~~~i~~~~~~l~~~q~~--~~ggl~~~-d~-----~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~~g 296 (360)
T TIGR03597 232 ITPKKEIKPKTYQLNPNQTL--FLGGLARF-DY-----LKGEKTSFTFYVSNELNIHRTKLENADELYNKHLG 296 (360)
T ss_pred cCCCCccCceEEEeCCCCEE--EEceEEEE-EE-----ecCCceEEEEEccCCceeEeechhhhHHHHHhhcC
Confidence 11 2245566666653311 00000000 01 11123678888888888766566655555555543
No 379
>PRK13796 GTPase YqeH; Provisional
Probab=98.31 E-value=1.5e-06 Score=71.49 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=38.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-------cccccccceeeEEEEecCceEEEEECCCch
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKY-------FESCTSLKENVGNFTYEKKNIKIVDLPGED 66 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 66 (211)
..+++++|.+|||||||+|+|..... ....|.++.....+.+++ ...++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCcc
Confidence 45899999999999999999985431 223344444444455543 35799999984
No 380
>KOG0464|consensus
Probab=98.30 E-value=3.4e-07 Score=74.41 Aligned_cols=112 Identities=19% Similarity=0.242 Sum_probs=78.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC--------cc-----cccc------cccceee--EEEEecCceEEEEECCCchhhhh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS--------KY-----FESC------TSLKENV--GNFTYEKKNIKIVDLPGEDRLRN 70 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~--------~~-----~~~~------~t~~~~~--~~~~~~~~~~~i~D~~G~~~~~~ 70 (211)
.+|.++....+||||.-.+++.- .. ..+. ..+.... ..+.|++.+++++|||||-.|+-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 47899999999999999988631 11 0000 1122222 23577888999999999999998
Q ss_pred hhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC
Q psy1914 71 KFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK 132 (211)
Q Consensus 71 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 132 (211)
+ ...+++--|+++.|||++.... .+....|... .+-++|-+.++||+|...+.
T Consensus 118 e-verclrvldgavav~dasagve--~qtltvwrqa------dk~~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 118 E-VERCLRVLDGAVAVFDASAGVE--AQTLTVWRQA------DKFKIPAHCFINKMDKLAAN 170 (753)
T ss_pred E-HHHHHHHhcCeEEEEeccCCcc--cceeeeehhc------cccCCchhhhhhhhhhhhhh
Confidence 4 7889999999999999987433 2233333332 22348999999999987654
No 381
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.29 E-value=1.5e-06 Score=67.60 Aligned_cols=56 Identities=23% Similarity=0.269 Sum_probs=36.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccc--cc-------ccceeeEEEEecCceEEEEECCCchhhh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFES--CT-------SLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~--~~-------t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
..++++|.+|||||||+|+|.+.....+ .+ .++.....+.+.+ -.++||||...+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~--~~liDtPG~~~~~ 185 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG--GLIADTPGFNEFG 185 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC--cEEEeCCCccccC
Confidence 4789999999999999999997543211 11 1222233344433 4799999986543
No 382
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.29 E-value=1.1e-05 Score=60.56 Aligned_cols=67 Identities=13% Similarity=0.128 Sum_probs=37.6
Q ss_pred ceEEEEECCCchhhhhhh---HHHhh--hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 55 KNIKIVDLPGEDRLRNKF---FDQYK--SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~---~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
..+.++||||........ +..++ ...+-+++|++++.....+..+......+ -+-=+++||.|-.
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~----------~~~~lIlTKlDet 153 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF----------GIDGLILTKLDET 153 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS----------STCEEEEESTTSS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc----------cCceEEEEeecCC
Confidence 369999999963322111 11121 14788999999987555444333332221 1234568999975
Q ss_pred CC
Q psy1914 130 LA 131 (211)
Q Consensus 130 ~~ 131 (211)
..
T Consensus 154 ~~ 155 (196)
T PF00448_consen 154 AR 155 (196)
T ss_dssp ST
T ss_pred CC
Confidence 43
No 383
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.28 E-value=4.8e-06 Score=77.94 Aligned_cols=111 Identities=15% Similarity=0.179 Sum_probs=65.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccc-----ccc--cc-eeeEEEEecCceEEEEECCCchh--------hhhhhHHHh
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFES-----CTS--LK-ENVGNFTYEKKNIKIVDLPGEDR--------LRNKFFDQY 76 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~-----~~t--~~-~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 76 (211)
=.+|+|++|+||||++++- +-.++-. ..+ .+ ...+.+-+.+ .-.++||+|... ... .|..+
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~-~avliDtaG~y~~~~~~~~~~~~-~W~~f 189 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD-EAVLIDTAGRYTTQDSDPEEDAA-AWLGF 189 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC-CEEEEcCCCccccCCCcccccHH-HHHHH
Confidence 3589999999999999987 3333221 111 11 1222333333 556999999421 112 24443
Q ss_pred h---------hcCCEEEEEEeCCCch--------hhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 77 K---------SSAKGIVYVLDSSTVQ--------KTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 77 ~---------~~~d~ii~v~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
+ +..++||+++|+.+.- .....++..+.++... -+...|+.+|+||+|+.
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~---lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ---LGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH---hCCCCCEEEEEecchhh
Confidence 2 3479999999987531 1112333334444332 12349999999999986
No 384
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.24 E-value=2.2e-05 Score=65.42 Aligned_cols=109 Identities=25% Similarity=0.285 Sum_probs=60.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc------Ccc----ccccc------------ccceeeEEE-E-e--------------
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY------SKY----FESCT------------SLKENVGNF-T-Y-------------- 52 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~------~~~----~~~~~------------t~~~~~~~~-~-~-------------- 52 (211)
...|+++|++||||||++..|.. .+. ..++. ..+...... . -
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999872 111 01110 011111110 0 0
Q ss_pred -cCceEEEEECCCchhhhhhhHHH---h--hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCC
Q psy1914 53 -EKKNIKIVDLPGEDRLRNKFFDQ---Y--KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQ 126 (211)
Q Consensus 53 -~~~~~~i~D~~G~~~~~~~~~~~---~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 126 (211)
++..+.++||||.......+... + ...++-+++|+|++-.+.....+ +.+...+ -+--+++||.
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a-~~F~~~~---------~~~g~IlTKl 249 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA-KAFKDSV---------DVGSVIITKL 249 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH-HHHHhcc---------CCcEEEEECc
Confidence 13488999999975332212221 1 12478899999997654423222 2222211 3456778888
Q ss_pred Ccc
Q psy1914 127 DQT 129 (211)
Q Consensus 127 Dl~ 129 (211)
|..
T Consensus 250 D~~ 252 (429)
T TIGR01425 250 DGH 252 (429)
T ss_pred cCC
Confidence 864
No 385
>KOG1534|consensus
Probab=98.24 E-value=5.1e-06 Score=61.90 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++-.+++||.||||||+++.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 45678999999999999999864
No 386
>KOG1424|consensus
Probab=98.20 E-value=1.7e-06 Score=71.97 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=42.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccccce--eeEEEEecCceEEEEECCCc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKE--NVGNFTYEKKNIKIVDLPGE 65 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~ 65 (211)
.+.|.+||.|||||||+||+|.+.+.+....|.|- ...++.+.. .+.+.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~-~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP-SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC-CceecCCCCc
Confidence 58999999999999999999999987666554443 334444433 6889999996
No 387
>PRK13796 GTPase YqeH; Provisional
Probab=98.20 E-value=1.8e-05 Score=65.17 Aligned_cols=97 Identities=14% Similarity=0.174 Sum_probs=56.6
Q ss_pred hhhhhhHHHhhhcCC-EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC-HHHHHHHHHHH
Q psy1914 67 RLRNKFFDQYKSSAK-GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS-SSVVKTLLQKE 144 (211)
Q Consensus 67 ~~~~~~~~~~~~~~d-~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~l~~~ 144 (211)
.|.. ..... ...+ .+++|+|+.|...+. ...+.+... +.|+++|+||+||.+... .....+.+...
T Consensus 58 ~~~~-~l~~i-~~~~~lIv~VVD~~D~~~s~---~~~L~~~~~-------~kpviLViNK~DLl~~~~~~~~i~~~l~~~ 125 (365)
T PRK13796 58 DFLK-LLNGI-GDSDALVVNVVDIFDFNGSW---IPGLHRFVG-------NNPVLLVGNKADLLPKSVKKNKVKNWLRQE 125 (365)
T ss_pred HHHH-HHHhh-cccCcEEEEEEECccCCCch---hHHHHHHhC-------CCCEEEEEEchhhCCCccCHHHHHHHHHHH
Confidence 4554 34433 3345 899999998855322 223333321 279999999999975332 22222222211
Q ss_pred HHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 145 LNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.... + .....++.+||++|.| ++++++.|.+
T Consensus 126 ~k~~---------g-----------------------~~~~~v~~vSAk~g~g---I~eL~~~I~~ 156 (365)
T PRK13796 126 AKEL---------G-----------------------LRPVDVVLISAQKGHG---IDELLEAIEK 156 (365)
T ss_pred HHhc---------C-----------------------CCcCcEEEEECCCCCC---HHHHHHHHHH
Confidence 1100 0 0012568899999999 9999998854
No 388
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.19 E-value=7.3e-05 Score=53.57 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+..+||++.|+|||||||++.++..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHH
Confidence 4568999999999999999999885
No 389
>KOG1487|consensus
Probab=98.12 E-value=9.6e-06 Score=62.30 Aligned_cols=86 Identities=23% Similarity=0.240 Sum_probs=57.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecCceEEEEECCCchhhhh------hhHHHhhhcCC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEKKNIKIVDLPGEDRLRN------KFFDQYKSSAK 81 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~~~~d 81 (211)
..||.++|-|.+||||++..+.+-.. ...+ .|...-.+.+.+++-.+.+.|+||.-.-.. .-.-...+.|+
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcn 138 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCN 138 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeeccc
Confidence 35899999999999999999986432 2222 222223345678888999999999732111 00111235689
Q ss_pred EEEEEEeCCCchhhH
Q psy1914 82 GIVYVLDSSTVQKTL 96 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~ 96 (211)
.+++|+|+..|-++-
T Consensus 139 li~~vld~~kp~~hk 153 (358)
T KOG1487|consen 139 LIFIVLDVLKPLSHK 153 (358)
T ss_pred EEEEEeeccCcccHH
Confidence 999999998876533
No 390
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.10 E-value=3.8e-06 Score=66.24 Aligned_cols=56 Identities=27% Similarity=0.252 Sum_probs=36.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc------ccc---cccceeeEEEEecCceEEEEECCCchhhh
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYF------ESC---TSLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~------~~~---~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
..+++|.+|||||||+|+|...... ... ..++.....+.+++ .=.++||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~-gG~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPG-GGWIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCC-CCEEEeCCCCCccC
Confidence 6789999999999999999864321 111 12222333455532 23589999986554
No 391
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.06 E-value=9.7e-06 Score=64.59 Aligned_cols=57 Identities=21% Similarity=0.225 Sum_probs=37.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc--c-------ccceeeEEEEecCceEEEEECCCchhhh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC--T-------SLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~-------t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
..++++|++|+|||||+|.|.+....... + .++.....+.+.+ ...++||||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCccC
Confidence 57999999999999999999975532211 1 1122223344432 34699999986543
No 392
>PRK00098 GTPase RsgA; Reviewed
Probab=98.06 E-value=1.2e-05 Score=64.39 Aligned_cols=57 Identities=23% Similarity=0.287 Sum_probs=36.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc--c-------ccceeeEEEEecCceEEEEECCCchhh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC--T-------SLKENVGNFTYEKKNIKIVDLPGEDRL 68 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~-------t~~~~~~~~~~~~~~~~i~D~~G~~~~ 68 (211)
...++++|++|+|||||+|+|.+.....+. + .++.....+.+++ ...++||||...+
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~-~~~~~DtpG~~~~ 229 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG-GGLLIDTPGFSSF 229 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC-CcEEEECCCcCcc
Confidence 457899999999999999999975432211 1 0112222333433 3488999998643
No 393
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.01 E-value=0.00019 Score=59.20 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=74.1
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCc-----------------ccccc-----cccc----eeeE-EEEecCc---
Q psy1914 6 FRKSSQKVVLLSGLSLSGKTLLFARLVYSK-----------------YFESC-----TSLK----ENVG-NFTYEKK--- 55 (211)
Q Consensus 6 ~~~~~~~ki~i~G~~~~GKSsli~~l~~~~-----------------~~~~~-----~t~~----~~~~-~~~~~~~--- 55 (211)
.|....+=|.++||..+|||||++||..-- .++.. .|+. ++.. .+.+++.
T Consensus 12 ~RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~ 91 (492)
T PF09547_consen 12 ERTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKV 91 (492)
T ss_pred HhcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceE
Confidence 345567889999999999999999998511 11111 1222 2222 3556543
Q ss_pred eEEEEECCCch-------------hhhhh--------hHHH-------hh-hc-CCEEEEEEeCCC---chhhHHHHHHH
Q psy1914 56 NIKIVDLPGED-------------RLRNK--------FFDQ-------YK-SS-AKGIVYVLDSST---VQKTLRDVAES 102 (211)
Q Consensus 56 ~~~i~D~~G~~-------------~~~~~--------~~~~-------~~-~~-~d~ii~v~d~~~---~~~~~~~~~~~ 102 (211)
++.++|+.|.. ++-.. +... .+ .+ .=++++--|.|- +...+.++.+.
T Consensus 92 kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEer 171 (492)
T PF09547_consen 92 KVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEER 171 (492)
T ss_pred EEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHH
Confidence 88999998851 11000 0000 11 12 234444456652 22335555554
Q ss_pred HHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHH
Q psy1914 103 LYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 103 ~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~ 146 (211)
...-|+. -++|+++++|-.+ +...+..+..+.++++++
T Consensus 172 vI~ELk~-----igKPFvillNs~~-P~s~et~~L~~eL~ekY~ 209 (492)
T PF09547_consen 172 VIEELKE-----IGKPFVILLNSTK-PYSEETQELAEELEEKYD 209 (492)
T ss_pred HHHHHHH-----hCCCEEEEEeCCC-CCCHHHHHHHHHHHHHhC
Confidence 4444433 2389999999665 334445556666665555
No 394
>PRK01889 GTPase RsgA; Reviewed
Probab=98.00 E-value=4.9e-05 Score=62.37 Aligned_cols=84 Identities=14% Similarity=0.186 Sum_probs=53.3
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccc
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQL 156 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (211)
..++|.+++|+++.. .-.......++..+.. .++|.++|+||+||.+. .....+.+...
T Consensus 110 aANvD~vliV~s~~p-~~~~~~ldr~L~~a~~------~~i~piIVLNK~DL~~~--~~~~~~~~~~~------------ 168 (356)
T PRK01889 110 AANVDTVFIVCSLNH-DFNLRRIERYLALAWE------SGAEPVIVLTKADLCED--AEEKIAEVEAL------------ 168 (356)
T ss_pred EEeCCEEEEEEecCC-CCChhHHHHHHHHHHH------cCCCEEEEEEChhcCCC--HHHHHHHHHHh------------
Confidence 356899999999853 3223344444444332 22788999999999743 11111222110
Q ss_pred ccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 157 EDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
...++++.+|+++|+| +++|.++|.
T Consensus 169 -------------------------~~g~~Vi~vSa~~g~g---l~~L~~~L~ 193 (356)
T PRK01889 169 -------------------------APGVPVLAVSALDGEG---LDVLAAWLS 193 (356)
T ss_pred -------------------------CCCCcEEEEECCCCcc---HHHHHHHhh
Confidence 1115778899999999 999999985
No 395
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.00 E-value=0.0001 Score=60.58 Aligned_cols=120 Identities=16% Similarity=0.122 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-c---ccc--ccc------------------ceeeEEE-----------EecC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY-F---ESC--TSL------------------KENVGNF-----------TYEK 54 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~-~---~~~--~t~------------------~~~~~~~-----------~~~~ 54 (211)
.+-.++++|++||||||++.+|..... . ... .+. +...... .+.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 345789999999999999999975321 0 000 000 1111111 1234
Q ss_pred ceEEEEECCCchhhhhh---hHHHh--hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 55 KNIKIVDLPGEDRLRNK---FFDQY--KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~---~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
..+.++||+|....... ....+ ...+.-.++|++++.....+.++...+......+...-. -+-=+++||.|-.
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~-~~~~~I~TKlDEt 294 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALP-DLAGCILTKLDEA 294 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccC-CCCEEEEeccccC
Confidence 48999999997533221 11111 122455688999977554455554444444321110000 1234667998875
Q ss_pred C
Q psy1914 130 L 130 (211)
Q Consensus 130 ~ 130 (211)
.
T Consensus 295 ~ 295 (374)
T PRK14722 295 S 295 (374)
T ss_pred C
Confidence 4
No 396
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.92 E-value=9.1e-05 Score=59.74 Aligned_cols=120 Identities=22% Similarity=0.283 Sum_probs=68.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccc------------------cccceee-----EE--EEec---------------
Q psy1914 14 VLLSGLSLSGKTLLFARLVYSKYFESC------------------TSLKENV-----GN--FTYE--------------- 53 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~~~~~~~------------------~t~~~~~-----~~--~~~~--------------- 53 (211)
.++.|-=|||||||++.++...-.... ...+... ++ ++.+
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 467888999999999999964421111 0111111 11 1211
Q ss_pred CceEEEEECCCchhhhhhhHHHhhh--------cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeC
Q psy1914 54 KKNIKIVDLPGEDRLRNKFFDQYKS--------SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNK 125 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 125 (211)
.....++.+.|.....+ ....+.. ..|+++.|+|+...........+.....+. +++ ++++||
T Consensus 84 ~~D~ivIEtTGlA~P~p-v~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia---~AD-----~ivlNK 154 (323)
T COG0523 84 RPDRLVIETTGLADPAP-VIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA---FAD-----VIVLNK 154 (323)
T ss_pred CCCEEEEeCCCCCCCHH-HHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH---hCc-----EEEEec
Confidence 11567888888754433 1222211 258899999997755434434445555443 233 788999
Q ss_pred CCccCCCCHHHHHHHHH
Q psy1914 126 QDQTLAKSSSVVKTLLQ 142 (211)
Q Consensus 126 ~Dl~~~~~~~~~~~~l~ 142 (211)
.|+.++.........+.
T Consensus 155 ~Dlv~~~~l~~l~~~l~ 171 (323)
T COG0523 155 TDLVDAEELEALEARLR 171 (323)
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 99997765444444443
No 397
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.91 E-value=0.00031 Score=51.55 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=38.6
Q ss_pred ceEEEEECCCchhhhhhh---HHHhh--hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 55 KNIKIVDLPGEDRLRNKF---FDQYK--SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~---~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
..+.++|+||........ ...+. ...+.+++|+|+....... +....+.+.. + ..-++.||.|..
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~----~~~~~~~~~~---~---~~~viltk~D~~ 152 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV----NQAKAFNEAL---G---ITGVILTKLDGD 152 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH----HHHHHHHhhC---C---CCEEEEECCcCC
Confidence 368899999974322111 11111 2489999999996543322 3333333221 1 246677999986
Q ss_pred CCC
Q psy1914 130 LAK 132 (211)
Q Consensus 130 ~~~ 132 (211)
...
T Consensus 153 ~~~ 155 (173)
T cd03115 153 ARG 155 (173)
T ss_pred CCc
Confidence 543
No 398
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.90 E-value=7.1e-05 Score=61.58 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|++||||||++..|..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999999999974
No 399
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.89 E-value=0.00016 Score=53.54 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=40.1
Q ss_pred eEEEEECCCchhhhhhh------HHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 56 NIKIVDLPGEDRLRNKF------FDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 56 ~~~i~D~~G~~~~~~~~------~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
...++.+.|...... + ....+ ..+.+|.|+|+..... .......+...+.. ++ ++++||+|+.
T Consensus 86 d~IiIE~sG~a~p~~-l~~~~~~~~~~~-~~~~iI~vVDa~~~~~-~~~~~~~~~~Qi~~---AD-----vIvlnK~D~~ 154 (178)
T PF02492_consen 86 DRIIIETSGLADPAP-LILQDPPLKEDF-RLDSIITVVDATNFDE-LENIPELLREQIAF---AD-----VIVLNKIDLV 154 (178)
T ss_dssp SEEEEEEECSSGGGG-HHHHSHHHHHHE-SESEEEEEEEGTTHGG-HTTHCHHHHHHHCT----S-----EEEEE-GGGH
T ss_pred CEEEECCccccccch-hhhccccccccc-cccceeEEeccccccc-cccchhhhhhcchh---cC-----EEEEeccccC
Confidence 677888988654433 2 11122 3689999999976432 33444455555542 23 7789999998
Q ss_pred CCC
Q psy1914 130 LAK 132 (211)
Q Consensus 130 ~~~ 132 (211)
+..
T Consensus 155 ~~~ 157 (178)
T PF02492_consen 155 SDE 157 (178)
T ss_dssp HHH
T ss_pred Chh
Confidence 665
No 400
>KOG2484|consensus
Probab=97.86 E-value=1.3e-05 Score=64.93 Aligned_cols=56 Identities=20% Similarity=0.311 Sum_probs=42.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccc--cccccceeeEEEEecCceEEEEECCCc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFE--SCTSLKENVGNFTYEKKNIKIVDLPGE 65 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
++.+++.|+|.+|+||||+||+|...+.-. ..|+++.....+.++ ..+.+.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld-k~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD-KKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc-CCceeccCCce
Confidence 567999999999999999999999877633 334443333344443 47899999997
No 401
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.84 E-value=0.00019 Score=56.85 Aligned_cols=86 Identities=13% Similarity=0.098 Sum_probs=59.9
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
.+.|-+++|+.+.+|+-+...+.+++...-. . ++..++++||+||.+...... +.+...+.
T Consensus 78 ~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~----~--gi~pvIvlnK~DL~~~~~~~~--~~~~~~y~----------- 138 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA----G--GIEPVIVLNKIDLLDDEEAAV--KELLREYE----------- 138 (301)
T ss_pred cccceEEEEEeccCCCCCHHHHHHHHHHHHH----c--CCcEEEEEEccccCcchHHHH--HHHHHHHH-----------
Confidence 3478888888888887656666666655532 2 277788899999987655443 22222222
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
...+.++.+|+++++| +++|.+++.
T Consensus 139 ------------------------~~gy~v~~~s~~~~~~---~~~l~~~l~ 163 (301)
T COG1162 139 ------------------------DIGYPVLFVSAKNGDG---LEELAELLA 163 (301)
T ss_pred ------------------------hCCeeEEEecCcCccc---HHHHHHHhc
Confidence 1227889999999999 999998875
No 402
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.83 E-value=0.0001 Score=61.89 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|+++|++|+||||.+..|..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456789999999999999988863
No 403
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=7.6e-05 Score=62.20 Aligned_cols=24 Identities=33% Similarity=0.228 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..-+++++|++|+||||++..|..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998875
No 404
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.80 E-value=0.0002 Score=57.81 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+-.++.|.-|||||||+|+++..
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 34678899999999999999854
No 405
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.79 E-value=0.00027 Score=58.06 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
++-.|+++||+||||||-+-.|...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHH
Confidence 3677999999999999988887753
No 406
>KOG0780|consensus
Probab=97.79 E-value=5.6e-05 Score=61.28 Aligned_cols=94 Identities=24% Similarity=0.374 Sum_probs=54.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccc----------ccc-------------cccceeeEEE--------------
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYF----------ESC-------------TSLKENVGNF-------------- 50 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~----------~~~-------------~t~~~~~~~~-------------- 50 (211)
+.+.--|+++|..|+||||.+-.|...... .++ .+--+-++.+
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~ 177 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD 177 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence 344556899999999999988887641100 000 0011112221
Q ss_pred --EecCceEEEEECCCchhhhhhhHHHhh-----hcCCEEEEEEeCCCchhhHHHHHH
Q psy1914 51 --TYEKKNIKIVDLPGEDRLRNKFFDQYK-----SSAKGIVYVLDSSTVQKTLRDVAE 101 (211)
Q Consensus 51 --~~~~~~~~i~D~~G~~~~~~~~~~~~~-----~~~d~ii~v~d~~~~~~~~~~~~~ 101 (211)
.-++..+.|+||.|-+.....+..... -++|-+|+|+|++-.+....++..
T Consensus 178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~a 235 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARA 235 (483)
T ss_pred HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHH
Confidence 112348999999997543332333322 248999999999876653444443
No 407
>KOG2485|consensus
Probab=97.78 E-value=4.4e-05 Score=60.20 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=41.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcc-------cccccccceeeEE-EEecCc-eEEEEECCCc
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKY-------FESCTSLKENVGN-FTYEKK-NIKIVDLPGE 65 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~-------~~~~~t~~~~~~~-~~~~~~-~~~i~D~~G~ 65 (211)
...++.++++|-||+|||||+|++..... ....|.....+.. +.+... .+.++||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCc
Confidence 34689999999999999999999875332 1222444444444 555444 8999999997
No 408
>KOG3859|consensus
Probab=97.78 E-value=0.00015 Score=56.51 Aligned_cols=127 Identities=20% Similarity=0.246 Sum_probs=72.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccc-----ccccceeeEEEEecCc----eEEEEECCCch-------hhhh----
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFES-----CTSLKENVGNFTYEKK----NIKIVDLPGED-------RLRN---- 70 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~----~~~i~D~~G~~-------~~~~---- 70 (211)
.++|+-+|.+|.|||||+..|.+-.+... .|+......++.+... .++++||.|.. +|.+
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 47899999999999999999998776332 2455555555544432 78899999961 1111
Q ss_pred --hhHHH-------------hhh--cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC
Q psy1914 71 --KFFDQ-------------YKS--SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133 (211)
Q Consensus 71 --~~~~~-------------~~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 133 (211)
.-... ++. ..++.++.+..+. . ++....-...+-+. +++.+|-|+-|.|-....+
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H-~LKslDLvtmk~Ld------skVNIIPvIAKaDtisK~e 193 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-H-SLKSLDLVTMKKLD------SKVNIIPVIAKADTISKEE 193 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-c-chhHHHHHHHHHHh------hhhhhHHHHHHhhhhhHHH
Confidence 00111 122 2466666665543 2 23333222222221 2367788889999876555
Q ss_pred HHHHHHHHHHHH
Q psy1914 134 SSVVKTLLQKEL 145 (211)
Q Consensus 134 ~~~~~~~l~~~~ 145 (211)
.......+..++
T Consensus 194 L~~FK~kimsEL 205 (406)
T KOG3859|consen 194 LKRFKIKIMSEL 205 (406)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 409
>KOG1533|consensus
Probab=97.74 E-value=0.00013 Score=55.35 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=39.0
Q ss_pred eEEEEECCCchh-------hhhhhHHHhhhcCCEEEE---EEeC---CCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEE
Q psy1914 56 NIKIVDLPGEDR-------LRNKFFDQYKSSAKGIVY---VLDS---STVQKTLRDVAESLYVILADPQVQSSRVNILVC 122 (211)
Q Consensus 56 ~~~i~D~~G~~~-------~~~~~~~~~~~~~d~ii~---v~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv 122 (211)
.+.++|+|||-. ... +.+ +++..+.-+. .+|+ ++|...+......+..++. ...|=+=|
T Consensus 98 ~Y~lFDcPGQVELft~h~~l~~-I~~-~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~------melphVNv 169 (290)
T KOG1533|consen 98 HYVLFDCPGQVELFTHHDSLNK-IFR-KLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH------MELPHVNV 169 (290)
T ss_pred cEEEEeCCCcEEEEeccchHHH-HHH-HHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh------hcccchhh
Confidence 789999999832 122 222 2333444333 3444 3455544444444444443 23788889
Q ss_pred EeCCCccCCC
Q psy1914 123 CNKQDQTLAK 132 (211)
Q Consensus 123 ~nK~Dl~~~~ 132 (211)
+.|+|+...-
T Consensus 170 lSK~Dl~~~y 179 (290)
T KOG1533|consen 170 LSKADLLKKY 179 (290)
T ss_pred hhHhHHHHhh
Confidence 9999997543
No 410
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.00044 Score=59.09 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..-.++++|++|+||||++..|..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988874
No 411
>PRK10867 signal recognition particle protein; Provisional
Probab=97.71 E-value=0.0003 Score=59.05 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=18.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHH
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~ 32 (211)
...|+++|++||||||++-.|.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHH
Confidence 4678999999999999766665
No 412
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.71 E-value=0.00013 Score=61.85 Aligned_cols=23 Identities=35% Similarity=0.258 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.--++++|++||||||++..|..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 34689999999999999999885
No 413
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.71 E-value=0.0003 Score=57.41 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
-.++.|.-|||||||+++++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3678899999999999999853
No 414
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.00014 Score=67.25 Aligned_cols=112 Identities=16% Similarity=0.157 Sum_probs=63.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcc-cccc-----cccceeeEEEEecCceEEEEECCCchh--------hhhhhHHHh---
Q psy1914 14 VLLSGLSLSGKTLLFARLVYSKY-FESC-----TSLKENVGNFTYEKKNIKIVDLPGEDR--------LRNKFFDQY--- 76 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~~~-~~~~-----~t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~--- 76 (211)
-+++|++|+||||++..--..-. .... ...+...+.+-+. ..-.++||+|-.. -.. .|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~-deaVlIDtaGry~~q~s~~~~~~~-~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFT-DEAVLIDTAGRYITQDSADEVDRA-EWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcccc-cceEEEcCCcceecccCcchhhHH-HHHHHHHH
Confidence 48899999999999886443221 1111 1222222322222 2667899998521 122 34433
Q ss_pred ------hhcCCEEEEEEeCCCch--------hhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 77 ------KSSAKGIVYVLDSSTVQ--------KTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 77 ------~~~~d~ii~v~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
.+..++||+.+|+++.- .....++.-+.++...- +...|+.+++||.|+..
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL---~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL---HARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh---ccCCceEEEEecccccc
Confidence 13479999999987521 11222333334443321 13499999999999975
No 415
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.00045 Score=57.43 Aligned_cols=23 Identities=43% Similarity=0.508 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+..++++|++||||||++.+|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999974
No 416
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00037 Score=62.01 Aligned_cols=23 Identities=35% Similarity=0.289 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.--++++|++||||||.+..|..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 34689999999999999999885
No 417
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.65 E-value=0.00044 Score=58.00 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=18.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHH
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~ 32 (211)
...++++|++|+||||.+-.|.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHH
Confidence 4578999999999999966665
No 418
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.0003 Score=57.76 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...++++|++||||||++..+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999874
No 419
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.61 E-value=0.00088 Score=43.60 Aligned_cols=69 Identities=19% Similarity=0.107 Sum_probs=44.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCC
Q psy1914 14 VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~ 91 (211)
+++.|..|+|||++...+...-... +.+... ++ .+.++|+++...............+|.++++++...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~-----g~~v~~--~~--d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~ 70 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR-----GKRVLL--ID--DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEA 70 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEE--EC--CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCch
Confidence 6788999999999999887532111 111211 22 688999998754332001334566899999998865
No 420
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.001 Score=55.10 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|++|+||||.+..+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999988863
No 421
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.55 E-value=0.00027 Score=41.52 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=26.2
Q ss_pred CCEEEEEEeCCCchh-hHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCC
Q psy1914 80 AKGIVYVLDSSTVQK-TLRDVAESLYVILADPQVQSSRVNILVCCNKQD 127 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 127 (211)
+++++|++|.|..+. ++++....+..+.. .+.+ .|+++|+||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~--~F~~--~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKP--LFPN--KPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHH--HTTT--S-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHH--HcCC--CCEEEEEeccC
Confidence 689999999997443 35555566566543 2334 99999999998
No 422
>KOG2423|consensus
Probab=97.53 E-value=0.00012 Score=59.68 Aligned_cols=88 Identities=23% Similarity=0.206 Sum_probs=52.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEec--CceEEEEECCCchhhhh-hhHHHhhhcCCEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYE--KKNIKIVDLPGEDRLRN-KFFDQYKSSAKGIV 84 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~D~~G~~~~~~-~~~~~~~~~~d~ii 84 (211)
.++.+.|.++|.+|+||||+||.|...+.-...|-.|. ...+.|- -+.+.++|+||.--... .-....+ .+++
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGE-TKVWQYItLmkrIfLIDcPGvVyps~dset~ivL---kGvV 379 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGE-TKVWQYITLMKRIFLIDCPGVVYPSSDSETDIVL---KGVV 379 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCc-chHHHHHHHHhceeEecCCCccCCCCCchHHHHh---hcee
Confidence 46789999999999999999999998776444332221 1111111 12788999999732211 0122222 3455
Q ss_pred EEEeCCCchhhHHHH
Q psy1914 85 YVLDSSTVQKTLRDV 99 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~ 99 (211)
-|=.+.+|+.++..+
T Consensus 380 RVenv~~pe~yi~~v 394 (572)
T KOG2423|consen 380 RVENVKNPEDYIDGV 394 (572)
T ss_pred eeeecCCHHHHHHHH
Confidence 555666666544443
No 423
>PRK13695 putative NTPase; Provisional
Probab=97.51 E-value=0.0013 Score=48.39 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++|+++|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998754
No 424
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.50 E-value=0.00067 Score=56.99 Aligned_cols=23 Identities=39% Similarity=0.372 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.-.++++|++||||||++..|..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999998887753
No 425
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.49 E-value=0.00022 Score=52.20 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
+|++.|++|+|||||+++++.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999885
No 426
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.48 E-value=0.0001 Score=50.62 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 427
>KOG2743|consensus
Probab=97.48 E-value=0.00057 Score=53.84 Aligned_cols=123 Identities=15% Similarity=0.163 Sum_probs=66.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccc-------------------cc-cc--------eeeEE--EEec----------
Q psy1914 14 VLLSGLSLSGKTLLFARLVYSKYFESC-------------------TS-LK--------ENVGN--FTYE---------- 53 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~~~~~~~-------------------~t-~~--------~~~~~--~~~~---------- 53 (211)
=++.|.=|+|||||+|.++.+.-.... .. .+ .+.++ ++++
T Consensus 60 tIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~gvraie~l 139 (391)
T KOG2743|consen 60 TIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNGVRAIENL 139 (391)
T ss_pred EEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchHHHHHHHH
Confidence 367899999999999999975421111 00 01 01111 2332
Q ss_pred ----Cc-eEEEEECCCchhhhhhhHHHhhh--------cCCEEEEEEeCCCchhhHHHH--HHHHHHHHcCcCcCCCCCc
Q psy1914 54 ----KK-NIKIVDLPGEDRLRNKFFDQYKS--------SAKGIVYVLDSSTVQKTLRDV--AESLYVILADPQVQSSRVN 118 (211)
Q Consensus 54 ----~~-~~~i~D~~G~~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p 118 (211)
++ ...+..|.|.....+ +...++. .-|+++-|+|+-.....+.+. ..++.....+-.+++
T Consensus 140 vqkkGkfD~IllETTGlAnPaP-ia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~AD---- 214 (391)
T KOG2743|consen 140 VQKKGKFDHILLETTGLANPAP-IASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIALAD---- 214 (391)
T ss_pred HhcCCCcceEEEeccCCCCcHH-HHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhhhh----
Confidence 22 677899999866555 3333321 259999999985422111111 111222211111222
Q ss_pred EEEEEeCCCccCCCCHHHHHHHHH
Q psy1914 119 ILVCCNKQDQTLAKSSSVVKTLLQ 142 (211)
Q Consensus 119 ~iiv~nK~Dl~~~~~~~~~~~~l~ 142 (211)
-+++||.||........+.+.+.
T Consensus 215 -~II~NKtDli~~e~~~~l~q~I~ 237 (391)
T KOG2743|consen 215 -RIIMNKTDLVSEEEVKKLRQRIR 237 (391)
T ss_pred -eeeeccccccCHHHHHHHHHHHH
Confidence 35689999998766665555544
No 428
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.48 E-value=0.00055 Score=50.22 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=40.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
..-+.++|++|||||||+.++...-. ..+..++.+...+..+.+ |.+|...++. ...+|+.++++
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~-----~~g~~vg~Ik~~~~~~~~-d~~g~Ds~~~-----r~aGA~~v~~~ 70 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALC-----ARGIRPGLIKHTHHDMDV-DKPGKDSYEL-----RKAGAAQTLVA 70 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHh-----hcCCeEEEEEEcCCCccc-CCCCcHHHHH-----HHhCCcEEEEE
Confidence 34689999999999999999986321 123345556555444444 7787655443 12456665543
No 429
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.47 E-value=0.0003 Score=51.75 Aligned_cols=43 Identities=19% Similarity=0.088 Sum_probs=27.8
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHHHH--HcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 81 KGIVYVLDSSTVQKTLRDVAESLYVI--LADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
|++++|+|+.++..... ..+.+. +.. .+.|+++|+||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~---~~i~~~~~l~~-----~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRC---PQVEEAVLQAG-----GNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCC---HHHHHHHHhcc-----CCCCEEEEEehhhcCCH
Confidence 78999999987543221 122222 221 23899999999999643
No 430
>KOG0469|consensus
Probab=97.45 E-value=0.00029 Score=59.11 Aligned_cols=109 Identities=16% Similarity=0.203 Sum_probs=70.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc------------ccccc-----cccceeeEEEE----e--------------cCce
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK------------YFESC-----TSLKENVGNFT----Y--------------EKKN 56 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~------------~~~~~-----~t~~~~~~~~~----~--------------~~~~ 56 (211)
.+.-++-....|||||-..|..+. |..+. ..++.....+. . ++.-
T Consensus 20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL 99 (842)
T KOG0469|consen 20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL 99 (842)
T ss_pred ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence 456788899999999999997532 11111 01111111111 0 1227
Q ss_pred EEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 57 IKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 57 ~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
++++|.|||-.|.++ ....++-.|+.+.|+|..+.. .-++...+...+... +.-++++||.|..
T Consensus 100 iNLIDSPGHVDFSSE-VTAALRVTDGALVVVDcv~Gv--CVQTETVLrQA~~ER------IkPvlv~NK~DRA 163 (842)
T KOG0469|consen 100 INLIDSPGHVDFSSE-VTAALRVTDGALVVVDCVSGV--CVQTETVLRQAIAER------IKPVLVMNKMDRA 163 (842)
T ss_pred EEeccCCCcccchhh-hhheeEeccCcEEEEEccCce--EechHHHHHHHHHhh------ccceEEeehhhHH
Confidence 899999999999996 666788899999999997733 234444455554432 4446789999963
No 431
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.44 E-value=0.00046 Score=57.03 Aligned_cols=92 Identities=26% Similarity=0.354 Sum_probs=53.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc----Ccc------cccc-c-------ccceeeE--EEE----------------
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVY----SKY------FESC-T-------SLKENVG--NFT---------------- 51 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~----~~~------~~~~-~-------t~~~~~~--~~~---------------- 51 (211)
.++...|+++|..||||||.+-.|.. ... ..+| | +.+..++ .+.
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 34567899999999999998877763 110 0111 0 1111110 010
Q ss_pred ---ecCceEEEEECCCchhhhhhhHHHh-----hhcCCEEEEEEeCCCchhhHHHH
Q psy1914 52 ---YEKKNIKIVDLPGEDRLRNKFFDQY-----KSSAKGIVYVLDSSTVQKTLRDV 99 (211)
Q Consensus 52 ---~~~~~~~i~D~~G~~~~~~~~~~~~-----~~~~d~ii~v~d~~~~~~~~~~~ 99 (211)
-....+.++||+|-......+.... .-++|=+++|+|+.-.+.....+
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A 232 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTA 232 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHH
Confidence 1123799999999754433333221 22489999999998766533333
No 432
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.44 E-value=0.0022 Score=48.91 Aligned_cols=63 Identities=22% Similarity=0.297 Sum_probs=35.8
Q ss_pred eEEEEEC-CCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 56 NIKIVDL-PGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 56 ~~~i~D~-~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
.+.++|| +|.+-|.+ ...+++|.+|.|+|.+- .+ +..+. .+.++-..-. - .++.+|+||.|-.
T Consensus 135 e~VivDtEAGiEHfgR----g~~~~vD~vivVvDpS~-~s-l~tae-ri~~L~~elg--~--k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEHFGR----GTIEGVDLVIVVVDPSY-KS-LRTAE-RIKELAEELG--I--KRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhhhcc----ccccCCCEEEEEeCCcH-HH-HHHHH-HHHHHHHHhC--C--ceEEEEEeeccch
Confidence 3445555 34443333 23467999999999975 22 32222 2233322211 1 6899999999854
No 433
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.41 E-value=0.00087 Score=52.84 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.-+++++|++|+||||++..+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH
Confidence 446999999999999999998864
No 434
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.34 E-value=0.00023 Score=42.78 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
..+|.|+.|||||||+.++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 435
>PRK08118 topology modulation protein; Reviewed
Probab=97.33 E-value=0.00019 Score=52.53 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.||+|+|++|||||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999863
No 436
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.32 E-value=0.009 Score=44.15 Aligned_cols=27 Identities=22% Similarity=0.150 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.+.-.++++|+.|+|||||++.+.+-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345589999999999999999998743
No 437
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.00022 Score=52.76 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.||+|+|+|||||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999976
No 438
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.30 E-value=0.0004 Score=50.36 Aligned_cols=51 Identities=31% Similarity=0.458 Sum_probs=36.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhh
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
.+.++|++|||||||+.++... ....+.+++.+......+.+ |.+|...++
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~-----l~~~g~~V~~iK~~~~~~~~-d~~g~Ds~~ 53 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPA-----LSARGLRVAVIKHDHHDFDI-DTPGKDSYR 53 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-----HHHcCCcEEEEEecCCcccc-cCccchHHH
Confidence 5889999999999999999852 12334456667666655444 788866555
No 439
>PRK07261 topology modulation protein; Provisional
Probab=97.30 E-value=0.00023 Score=52.33 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.||+|+|++|||||||...|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998753
No 440
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.30 E-value=0.00021 Score=54.55 Aligned_cols=23 Identities=35% Similarity=0.248 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
-++|+|++|||||||+|.+.+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58999999999999999987633
No 441
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.27 E-value=0.016 Score=40.88 Aligned_cols=100 Identities=16% Similarity=0.138 Sum_probs=57.4
Q ss_pred EEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEec------CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 15 LLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYE------KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 15 ~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~------~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
+.-|..|+|||++.-.+...-. .. +.....+..+ ...+.++|+|+... . .....+..+|.++++++
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~----~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~--~-~~~~~l~~aD~vviv~~ 75 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KL----GKRVLLLDADLGLANLDYDYIIIDTGAGIS--D-NVLDFFLAADEVIVVTT 75 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HC----CCcEEEEECCCCCCCCCCCEEEEECCCCCC--H-HHHHHHHhCCeEEEEcC
Confidence 4557889999998777653211 10 1111111111 04789999997532 2 23446778999999998
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
.+. .+ +......+..+.... . ..++.+|+|+.+-
T Consensus 76 ~~~-~s-~~~~~~~l~~l~~~~--~--~~~~~lVvN~~~~ 109 (139)
T cd02038 76 PEP-TS-ITDAYALIKKLAKQL--R--VLNFRVVVNRAES 109 (139)
T ss_pred CCh-hH-HHHHHHHHHHHHHhc--C--CCCEEEEEeCCCC
Confidence 854 22 444444443332211 1 2578899999863
No 442
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.24 E-value=0.0011 Score=48.22 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRN 70 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 70 (211)
+.=.++++||+|+|||+|++.++.-.. | ..+++.++|..++ +.+-+.|+.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Lis----p----~~G~l~f~Ge~vs---~~~pea~Rq 77 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLIS----P----TSGTLLFEGEDVS---TLKPEAYRQ 77 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhccC----C----CCceEEEcCcccc---ccChHHHHH
Confidence 345789999999999999999985221 2 2355666666533 344455555
No 443
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.23 E-value=0.0072 Score=40.23 Aligned_cols=81 Identities=16% Similarity=0.083 Sum_probs=48.8
Q ss_pred EEEEc-CCCCCHHHHHHHHHcCcccccccccceeeEEEEecC-ceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCC
Q psy1914 14 VLLSG-LSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEK-KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 14 i~i~G-~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~ 91 (211)
|++.| ..|+||||+...+...-.. .+.+...+..+. ..+.++|+|+...... ...+..+|.++++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~vl~~d~d~~~d~viiD~p~~~~~~~---~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKRVLLIDLDPQYDYIIIDTPPSLGLLT---RNALAAADLVLIPVQPSP 73 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCcEEEEeCCCCCCEEEEeCcCCCCHHH---HHHHHHCCEEEEeccCCH
Confidence 56666 5699999988877642211 111222232222 3789999998754332 245667999999998854
Q ss_pred chhhHHHHHHHHH
Q psy1914 92 VQKTLRDVAESLY 104 (211)
Q Consensus 92 ~~~~~~~~~~~~~ 104 (211)
.+ +....+.+.
T Consensus 74 -~s-~~~~~~~~~ 84 (104)
T cd02042 74 -LD-LDGLEKLLE 84 (104)
T ss_pred -HH-HHHHHHHHH
Confidence 22 445444443
No 444
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.00029 Score=54.16 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
-|+++|++|||||||++.+.+=
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999863
No 445
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.21 E-value=0.00031 Score=49.65 Aligned_cols=20 Identities=40% Similarity=0.509 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy1914 14 VLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~ 33 (211)
|+++|++||||||++.++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999984
No 446
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.20 E-value=0.00034 Score=52.70 Aligned_cols=26 Identities=35% Similarity=0.313 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
+.=.++++||+|||||||+.++.+=+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 34468999999999999999998643
No 447
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.18 E-value=0.004 Score=44.34 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=39.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCc-eEEE-EECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKK-NIKI-VDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~-~~~i-~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+.-.++++|++|+|||||++.+.+-..+. .+.+.+++. .+.+ ...+|-...+-.+......+++.+++
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--------~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illl 94 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPD--------EGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLL 94 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCC--------ceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 34568999999999999999998743221 233444433 2222 22444444333355556666764443
No 448
>KOG0066|consensus
Probab=97.17 E-value=0.0022 Score=53.40 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=47.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccccc-------ccc-----------------------eee---------EEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESCT-------SLK-----------------------ENV---------GNFT 51 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~-------t~~-----------------------~~~---------~~~~ 51 (211)
.-||+|+||.|+|||||+..|++.--+.... .+| ++. +.+-
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fG 692 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFG 692 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhh
Confidence 3589999999999999999998743221110 000 000 0000
Q ss_pred e--cCceEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 52 Y--EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 52 ~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+ ...++.+.|+.|-...+..+...++..+|++|+=
T Consensus 693 L~sHAHTikikdLSGGQKaRValaeLal~~PDvlILD 729 (807)
T KOG0066|consen 693 LASHAHTIKIKDLSGGQKARVALAELALGGPDVLILD 729 (807)
T ss_pred hhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEec
Confidence 0 1127889999887766665677778888877663
No 449
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.15 E-value=0.00039 Score=48.85 Aligned_cols=26 Identities=27% Similarity=0.278 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
+.-.++|+|+.|+|||||++.+++..
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 44578999999999999999988743
No 450
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.15 E-value=0.00043 Score=54.64 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.+..|+|.|++||||||+++.+..
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~ 149 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLE 149 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCccccchHHHHHhh
Confidence 3467899999999999999999986
No 451
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.13 E-value=0.001 Score=53.70 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+..++|.|++||||||++++|+..
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999863
No 452
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.12 E-value=0.00044 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.=+++|+|++|+|||||+|-+.+
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHh
Confidence 45799999999999999999876
No 453
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.10 E-value=0.00054 Score=42.32 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy1914 14 VLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~ 34 (211)
|++.|++||||||+.+++...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999863
No 454
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.08 E-value=0.0014 Score=53.05 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.+.++++.|++||||||++++|+..
T Consensus 146 ~~~~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 146 RAHRNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred HcCCeEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999999999864
No 455
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.05 E-value=0.0015 Score=52.94 Aligned_cols=63 Identities=21% Similarity=0.186 Sum_probs=42.2
Q ss_pred EECCCch-hhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC
Q psy1914 60 VDLPGED-RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133 (211)
Q Consensus 60 ~D~~G~~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 133 (211)
-+.||+. ++.. ........+|+++.|+|+.+|..+.. ..+.++... .|.++|+||+||.+...
T Consensus 15 ~~~~g~~~k~~~-~~~~~~~~~d~vvevvDar~P~~s~~---~~l~~~v~~-------k~~i~vlNK~DL~~~~~ 78 (322)
T COG1161 15 QWFPGHMKKAKR-QLKEVLKSVDVVVEVVDARDPLGTRN---PELERIVKE-------KPKLLVLNKADLAPKEV 78 (322)
T ss_pred cCCCCchHHHHH-HHHHhcccCCEEEEEEeccccccccC---ccHHHHHcc-------CCcEEEEehhhcCCHHH
Confidence 3458874 4444 45666788999999999999765332 222333322 56699999999986544
No 456
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.04 E-value=0.0004 Score=50.45 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999864
No 457
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.03 E-value=0.00062 Score=48.30 Aligned_cols=66 Identities=27% Similarity=0.284 Sum_probs=36.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCc-eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKK-NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDS 89 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~ 89 (211)
+.|+|+|+.|||||||+..|++.-.. .+.....+.-.+. .. -+|.||.+.++ . ..+|+.+++..+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~-----~g~~v~~ik~~~~g~~-~~d~pG~Dt~r-----~-~aGA~~~~~~~~~ 67 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKR-----RGYRVAVIKHTDHGQF-EIDPPGTDTWR-----F-KAGADVVLVSSDE 67 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH-----TT--EEEEEE-STTST-TCSTTCHHHHH-----H-HCT-SEEEEECSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhH-----cCCceEEEEEccCCCc-ccCCCCccccc-----c-cccceEEEEEcCC
Confidence 36899999999999999999863221 1222332211111 10 15667764333 2 3567777776554
No 458
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.03 E-value=0.00059 Score=51.68 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++..-|+++|++|||||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4566799999999999999999985
No 459
>PRK01889 GTPase RsgA; Reviewed
Probab=97.02 E-value=0.00092 Score=54.94 Aligned_cols=25 Identities=36% Similarity=0.321 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.-+++++|.+|+|||||+|.+++..
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhc
Confidence 4589999999999999999999744
No 460
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.02 E-value=0.00061 Score=48.16 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy1914 14 VLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~ 34 (211)
|+++|++|||||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 461
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.01 E-value=0.004 Score=49.96 Aligned_cols=111 Identities=21% Similarity=0.208 Sum_probs=62.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-------cc---------------cceeeEE---------EEe-----
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-------TS---------------LKENVGN---------FTY----- 52 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-------~t---------------~~~~~~~---------~~~----- 52 (211)
.+..-++++|-.|+||||-+-.|...-..... .| .+..+-. +-|
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 34678999999999999998888742110000 00 1111110 111
Q ss_pred ---cCceEEEEECCCchhhhhhhHHH------hhhc-----CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc
Q psy1914 53 ---EKKNIKIVDLPGEDRLRNKFFDQ------YKSS-----AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN 118 (211)
Q Consensus 53 ---~~~~~~i~D~~G~~~~~~~~~~~------~~~~-----~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 118 (211)
++..+.++||+|--....++... .... ++-+++++|++-.++.+.++..+ .+... -
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F-~eav~---------l 286 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIF-NEAVG---------L 286 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHH-HHhcC---------C
Confidence 23489999999963222212211 1222 23388888999888767666554 44321 1
Q ss_pred EEEEEeCCCcc
Q psy1914 119 ILVCCNKQDQT 129 (211)
Q Consensus 119 ~iiv~nK~Dl~ 129 (211)
-=+++||.|-.
T Consensus 287 ~GiIlTKlDgt 297 (340)
T COG0552 287 DGIILTKLDGT 297 (340)
T ss_pred ceEEEEecccC
Confidence 24678999954
No 462
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.00 E-value=0.00073 Score=51.20 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=23.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
..+...|+|.|++|||||||.+.|...
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999863
No 463
>PRK14530 adenylate kinase; Provisional
Probab=96.98 E-value=0.00075 Score=51.44 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.+|+|+|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999974
No 464
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.98 E-value=0.0084 Score=46.31 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+-..+++.|..|+||||+++++..
T Consensus 50 ~pannvLL~G~rGtGKSSlVkall~ 74 (249)
T PF05673_consen 50 LPANNVLLWGARGTGKSSLVKALLN 74 (249)
T ss_pred CCCcceEEecCCCCCHHHHHHHHHH
Confidence 3456899999999999999999986
No 465
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.97 E-value=0.00088 Score=46.43 Aligned_cols=27 Identities=33% Similarity=0.237 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYF 37 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~ 37 (211)
...++++|++|+|||+++..+...-..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 357899999999999999999875443
No 466
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.97 E-value=0.00056 Score=50.94 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.+-.++++|++||||||+++.+++-
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44678999999999999999999864
No 467
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.95 E-value=0.0007 Score=49.93 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.++++|++||||||++++|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999998763
No 468
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.94 E-value=0.00079 Score=45.28 Aligned_cols=22 Identities=41% Similarity=0.369 Sum_probs=19.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHH
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~ 32 (211)
.-.++++|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3468999999999999999986
No 469
>PRK06217 hypothetical protein; Validated
Probab=96.93 E-value=0.00083 Score=49.84 Aligned_cols=23 Identities=35% Similarity=0.251 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+|+|+|.+||||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 470
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.92 E-value=0.00085 Score=49.92 Aligned_cols=23 Identities=43% Similarity=0.434 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
-.++++|++|||||||++.|...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999999764
No 471
>KOG4273|consensus
Probab=96.92 E-value=0.0037 Score=48.17 Aligned_cols=114 Identities=20% Similarity=0.205 Sum_probs=68.0
Q ss_pred CCEEEEEcCCCC--CHHHHHHHHHcCcccccccc-cceeeEEEEecCc----eEEEEECCCc-hhhhhhhHHHhhhcCCE
Q psy1914 11 QKVVLLSGLSLS--GKTLLFARLVYSKYFESCTS-LKENVGNFTYEKK----NIKIVDLPGE-DRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 11 ~~ki~i~G~~~~--GKSsli~~l~~~~~~~~~~t-~~~~~~~~~~~~~----~~~i~D~~G~-~~~~~~~~~~~~~~~d~ 82 (211)
++-++++|.+|+ ||-+|+.+|....+.....+ -......++++++ .+++.=.+-. +.+..+ .+ ......+
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn-~~-~a~pl~a 81 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPN-AE-IAEPLQA 81 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCC-cc-cccceee
Confidence 467899999999 99999999998777444322 2234455666654 2333222211 222221 11 1223578
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK 132 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 132 (211)
+++|||.+. .+.+.....|+...- +..- -.++.++||.|..++.
T Consensus 82 ~vmvfdlse-~s~l~alqdwl~htd----insf-dillcignkvdrvphh 125 (418)
T KOG4273|consen 82 FVMVFDLSE-KSGLDALQDWLPHTD----INSF-DILLCIGNKVDRVPHH 125 (418)
T ss_pred EEEEEeccc-hhhhHHHHhhccccc----cccc-hhheecccccccccch
Confidence 899999987 344767766665432 1111 2357789999987654
No 472
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.91 E-value=0.00089 Score=50.79 Aligned_cols=23 Identities=30% Similarity=0.184 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+ .++++|++|+|||||++.+.+-
T Consensus 26 g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 26 G-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred C-cEEEECCCCCCHHHHHHHHhCC
Confidence 5 8999999999999999999874
No 473
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.90 E-value=0.00091 Score=46.16 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy1914 14 VLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~ 34 (211)
|++.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999864
No 474
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.89 E-value=0.00091 Score=46.36 Aligned_cols=20 Identities=40% Similarity=0.444 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy1914 14 VLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~ 33 (211)
|++.|++|+|||++++.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 68999999999999999986
No 475
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.88 E-value=0.0009 Score=49.35 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.|+++|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999874
No 476
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.87 E-value=0.0012 Score=48.81 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHH
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~ 32 (211)
.+.-.++++|++|+|||||++.+.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 345689999999999999999886
No 477
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.87 E-value=0.00086 Score=54.29 Aligned_cols=21 Identities=33% Similarity=0.350 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-++++||+|||||||++.+.+
T Consensus 31 f~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999999986
No 478
>PRK03839 putative kinase; Provisional
Probab=96.86 E-value=0.001 Score=49.09 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+|+++|++||||||+..+|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999864
No 479
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.84 E-value=0.0013 Score=49.55 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=22.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+.--|+++|++|||||||++.+.+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35567999999999999999999864
No 480
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.84 E-value=0.00097 Score=51.96 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+--++++||.|||||||++.+.+
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999999986
No 481
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.84 E-value=0.0013 Score=49.47 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
--++|+||.|+|||||++.|++.-
T Consensus 28 ev~ailGPNGAGKSTlLk~LsGel 51 (259)
T COG4559 28 EVLAILGPNGAGKSTLLKALSGEL 51 (259)
T ss_pred cEEEEECCCCccHHHHHHHhhCcc
Confidence 347899999999999999999743
No 482
>PRK08233 hypothetical protein; Provisional
Probab=96.83 E-value=0.0013 Score=48.52 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
..-|+|.|.+|||||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 366888999999999999999853
No 483
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.82 E-value=0.0014 Score=49.65 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+..-|+++|++|||||||+++|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34566888999999999999999754
No 484
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.81 E-value=0.001 Score=49.94 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy1914 14 VLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~ 34 (211)
|++.|++|||||||.++|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999763
No 485
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.81 E-value=0.0011 Score=50.70 Aligned_cols=21 Identities=33% Similarity=0.335 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-|+++|++|+|||||+..+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 489999999999999999986
No 486
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.81 E-value=0.00077 Score=54.99 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=23.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
-+.+.+|+|.|++|||||||+++|+..
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcc
Confidence 345788999999999999999999864
No 487
>KOG3347|consensus
Probab=96.80 E-value=0.0011 Score=46.99 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=23.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+.+++|++.|.||+|||||..++..
T Consensus 4 ~r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 4 ERERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hhcCCCEEEeCCCCCCchhHHHHHHH
Confidence 36678999999999999999999984
No 488
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.79 E-value=0.0012 Score=50.21 Aligned_cols=26 Identities=31% Similarity=0.221 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34478999999999999999998743
No 489
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.78 E-value=0.0014 Score=50.65 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=22.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
-...+|++|+|++|||||+|+..++.
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~ 35 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLY 35 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999999999999885
No 490
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.77 E-value=0.0011 Score=50.07 Aligned_cols=22 Identities=41% Similarity=0.350 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
---+++||+|||||||+..|..
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHHh
Confidence 3458999999999999998864
No 491
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.77 E-value=0.0013 Score=50.10 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.-.++++|++|+|||||++.+.+-
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999974
No 492
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.77 E-value=0.0013 Score=49.66 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
+.=.++++|+.|||||||++.+.+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998743
No 493
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.76 E-value=0.0013 Score=48.96 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.=.++++|+.|+|||||++.+.+-.
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999998743
No 494
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.76 E-value=0.0016 Score=48.28 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|++||||||+++++..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999983
No 495
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.76 E-value=0.0013 Score=49.77 Aligned_cols=26 Identities=31% Similarity=0.250 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
+.-.++++|+.|+|||||++.+.+-.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998743
No 496
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.76 E-value=0.0013 Score=50.74 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999743
No 497
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.76 E-value=0.04 Score=36.98 Aligned_cols=98 Identities=16% Similarity=0.054 Sum_probs=54.8
Q ss_pred EcCCCCCHHHHHHHHHcCcccccccccceeeEEEEec---CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCch
Q psy1914 17 SGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYE---KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQ 93 (211)
Q Consensus 17 ~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 93 (211)
=+..|+||||+...|...-.... +....-+..+ +..+.++|+|+..... ....+..+|.++++++.+..
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~----~~~~~l~d~d~~~~~D~IIiDtpp~~~~~---~~~~l~~aD~vlvvv~~~~~- 77 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEA----GRRVLLVDLDLQFGDDYVVVDLGRSLDEV---SLAALDQADRVFLVTQQDLP- 77 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcC----CCcEEEEECCCCCCCCEEEEeCCCCcCHH---HHHHHHHcCeEEEEecCChH-
Confidence 35679999998887764222110 1111112111 1178999999875433 23456779999999987552
Q ss_pred hhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeC
Q psy1914 94 KTLRDVAESLYVILADPQVQSSRVNILVCCNK 125 (211)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 125 (211)
+ +....+.+..+.+.. .. ....+.+|+|+
T Consensus 78 s-~~~~~~~~~~l~~~~-~~-~~~~~~lVvNr 106 (106)
T cd03111 78 S-IRNAKRLLELLRVLD-YS-LPAKIELVLNR 106 (106)
T ss_pred H-HHHHHHHHHHHHHcC-CC-CcCceEEEecC
Confidence 2 445555544443321 11 02457777775
No 498
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.74 E-value=0.0014 Score=49.98 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.=.++++|+.|+|||||++.+.+-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999999874
No 499
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.73 E-value=0.0015 Score=49.51 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
+.=.++++|+.|||||||++.+.+-.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999999743
No 500
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.72 E-value=0.0015 Score=49.62 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.=.++++|++|+|||||++.+.+-
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999999999874
Done!