Query psy1915
Match_columns 361
No_of_seqs 311 out of 2686
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 19:31:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1268|consensus 100.0 7.3E-56 1.6E-60 419.0 32.7 262 100-361 372-633 (670)
2 COG0449 GlmS Glucosamine 6-pho 100.0 8.9E-55 1.9E-59 428.3 31.9 316 44-361 143-560 (597)
3 PTZ00394 glucosamine-fructose- 100.0 7.9E-47 1.7E-51 387.9 27.4 279 73-360 353-632 (670)
4 PLN02981 glucosamine:fructose- 100.0 3.9E-45 8.4E-50 376.7 28.8 280 72-360 361-642 (680)
5 TIGR01135 glmS glucosamine--fr 100.0 5.1E-44 1.1E-48 367.0 31.2 281 71-360 288-569 (607)
6 PRK00331 glucosamine--fructose 100.0 2.1E-43 4.5E-48 362.2 31.7 307 44-360 253-566 (604)
7 PRK11382 frlB fructoselysine-6 100.0 7.5E-42 1.6E-46 327.0 27.3 248 74-339 44-294 (340)
8 PTZ00295 glucosamine-fructose- 100.0 6.3E-42 1.4E-46 352.4 28.6 275 72-357 320-600 (640)
9 COG2222 AgaS Predicted phospho 100.0 3.9E-40 8.5E-45 310.7 25.4 248 74-340 39-287 (340)
10 TIGR02815 agaS_fam putative su 100.0 1.3E-38 2.9E-43 307.6 26.1 260 75-357 43-320 (372)
11 COG1737 RpiR Transcriptional r 99.9 4.4E-24 9.6E-29 199.1 11.9 184 18-213 51-261 (281)
12 PRK08674 bifunctional phosphog 99.9 4.3E-21 9.3E-26 183.7 24.8 280 43-346 6-299 (337)
13 PRK15482 transcriptional regul 99.9 1.3E-22 2.9E-27 189.9 13.1 184 18-212 49-265 (285)
14 PRK11557 putative DNA-binding 99.9 3.1E-22 6.8E-27 186.8 10.1 184 18-212 45-258 (278)
15 PRK11337 DNA-binding transcrip 99.9 2.6E-21 5.7E-26 181.8 14.1 183 18-212 61-270 (292)
16 COG0794 GutQ Predicted sugar p 99.9 2.2E-21 4.8E-26 168.2 11.9 155 43-214 14-173 (202)
17 cd05008 SIS_GlmS_GlmD_1 SIS (S 99.9 5.7E-21 1.2E-25 157.0 12.7 125 76-209 1-125 (126)
18 PRK11302 DNA-binding transcrip 99.9 2.1E-21 4.4E-26 181.8 10.3 184 18-213 49-258 (284)
19 TIGR02128 G6PI_arch bifunction 99.8 1.6E-18 3.5E-23 163.0 21.1 241 75-348 22-273 (308)
20 cd05009 SIS_GlmS_GlmD_2 SIS (S 99.8 1E-18 2.2E-23 148.3 11.4 115 243-359 2-116 (153)
21 PRK14101 bifunctional glucokin 99.8 8.3E-19 1.8E-23 181.3 12.9 184 18-213 389-598 (638)
22 cd05014 SIS_Kpsf KpsF-like pro 99.8 2.9E-18 6.2E-23 141.3 11.2 121 75-205 1-125 (128)
23 cd05010 SIS_AgaS_like AgaS-lik 99.7 3.6E-18 7.7E-23 144.5 8.9 84 257-340 1-89 (151)
24 COG2103 Predicted sugar phosph 99.7 7.1E-18 1.5E-22 149.4 10.9 154 43-208 37-209 (298)
25 cd05710 SIS_1 A subgroup of th 99.7 2E-17 4.3E-22 134.9 12.1 100 76-184 1-101 (120)
26 PRK05441 murQ N-acetylmuramic 99.7 5.7E-17 1.2E-21 152.1 16.1 162 43-214 39-217 (299)
27 cd05007 SIS_Etherase N-acetylm 99.7 6.9E-17 1.5E-21 148.5 16.1 161 43-213 26-203 (257)
28 TIGR00274 N-acetylmuramic acid 99.7 3.5E-17 7.7E-22 152.6 12.6 162 43-213 34-211 (291)
29 cd05005 SIS_PHI Hexulose-6-pho 99.7 3.3E-16 7.2E-21 136.7 16.4 125 73-213 32-167 (179)
30 PF01380 SIS: SIS domain SIS d 99.7 3.8E-17 8.2E-22 134.8 9.5 124 74-206 5-129 (131)
31 PRK10892 D-arabinose 5-phospha 99.7 6.6E-17 1.4E-21 154.3 12.0 130 75-214 48-181 (326)
32 TIGR03127 RuMP_HxlB 6-phospho 99.7 2.9E-16 6.3E-21 137.0 14.9 123 74-212 30-163 (179)
33 TIGR00393 kpsF KpsF/GutQ famil 99.7 2.6E-16 5.6E-21 146.1 12.5 130 75-214 1-134 (268)
34 PRK11543 gutQ D-arabinose 5-ph 99.7 1.9E-16 4E-21 150.9 11.5 130 74-213 42-175 (321)
35 PRK12570 N-acetylmuramic acid- 99.7 7.9E-16 1.7E-20 144.0 13.1 162 43-213 35-212 (296)
36 PRK13938 phosphoheptose isomer 99.6 5.6E-15 1.2E-19 130.0 12.5 107 74-184 45-167 (196)
37 PRK00414 gmhA phosphoheptose i 99.6 1.6E-15 3.4E-20 133.6 8.8 106 74-183 44-164 (192)
38 PRK13937 phosphoheptose isomer 99.6 4.5E-15 9.7E-20 130.5 9.4 124 49-184 21-160 (188)
39 cd05006 SIS_GmhA Phosphoheptos 99.6 7.1E-15 1.5E-19 128.1 10.0 102 74-183 33-154 (177)
40 TIGR00441 gmhA phosphoheptose 99.6 2.7E-15 5.8E-20 127.7 6.7 108 73-184 10-133 (154)
41 PRK10886 DnaA initiator-associ 99.6 1.3E-14 2.9E-19 127.6 10.4 107 74-184 41-166 (196)
42 PF01380 SIS: SIS domain SIS d 99.6 2E-14 4.2E-19 118.5 9.6 108 251-359 2-109 (131)
43 cd05017 SIS_PGI_PMI_1 The memb 99.5 3.8E-14 8.3E-19 115.3 10.6 110 76-203 1-114 (119)
44 PLN02981 glucosamine:fructose- 99.5 6.9E-13 1.5E-17 137.7 20.6 114 244-359 353-466 (680)
45 cd05013 SIS_RpiR RpiR-like pro 99.5 1.8E-13 3.8E-18 113.6 11.6 122 75-208 14-136 (139)
46 PRK13936 phosphoheptose isomer 99.5 3.4E-13 7.4E-18 119.4 12.8 109 72-184 41-168 (197)
47 PRK02947 hypothetical protein; 99.5 1.5E-13 3.3E-18 125.7 10.0 106 74-183 40-170 (246)
48 PTZ00394 glucosamine-fructose- 99.4 4.6E-12 1E-16 131.2 18.8 112 246-359 346-457 (670)
49 COG0279 GmhA Phosphoheptose is 99.4 2E-12 4.2E-17 107.7 11.3 127 46-184 21-163 (176)
50 PRK11382 frlB fructoselysine-6 99.4 6.3E-12 1.4E-16 120.6 14.5 130 227-357 14-146 (340)
51 PRK00331 glucosamine--fructose 99.4 6.5E-11 1.4E-15 122.2 20.8 243 43-359 145-392 (604)
52 cd05009 SIS_GlmS_GlmD_2 SIS (S 99.3 1.2E-11 2.6E-16 104.7 11.3 124 75-214 14-139 (153)
53 PTZ00295 glucosamine-fructose- 99.3 1.1E-10 2.3E-15 121.1 20.5 112 245-359 313-425 (640)
54 cd05008 SIS_GlmS_GlmD_1 SIS (S 99.3 1.6E-11 3.5E-16 100.6 11.1 100 256-357 1-100 (126)
55 cd05710 SIS_1 A subgroup of th 99.3 1.4E-11 3.1E-16 100.3 10.3 102 256-358 1-102 (120)
56 cd05013 SIS_RpiR RpiR-like pro 99.3 2E-11 4.3E-16 101.1 10.9 113 244-358 3-115 (139)
57 COG2222 AgaS Predicted phospho 99.3 9.7E-11 2.1E-15 111.2 14.4 133 226-359 8-143 (340)
58 TIGR01135 glmS glucosamine--fr 99.3 3.9E-10 8.4E-15 116.5 20.1 109 249-359 286-394 (607)
59 COG0794 GutQ Predicted sugar p 99.2 5.8E-10 1.3E-14 97.2 16.3 114 244-359 28-142 (202)
60 cd05005 SIS_PHI Hexulose-6-pho 99.2 4.3E-10 9.2E-15 98.1 15.4 111 241-358 20-130 (179)
61 COG1737 RpiR Transcriptional r 99.2 3.1E-10 6.7E-15 106.1 14.1 117 241-359 117-233 (281)
62 TIGR03127 RuMP_HxlB 6-phospho 99.2 7.1E-10 1.5E-14 96.7 15.3 112 241-359 17-128 (179)
63 cd04795 SIS SIS domain. SIS (S 99.2 4.3E-11 9.2E-16 91.3 6.7 79 77-164 1-81 (87)
64 PRK11543 gutQ D-arabinose 5-ph 99.2 8.5E-10 1.8E-14 105.1 15.4 114 242-357 29-143 (321)
65 cd05014 SIS_Kpsf KpsF-like pro 99.1 4.4E-10 9.5E-15 92.3 11.3 102 256-359 2-103 (128)
66 TIGR02815 agaS_fam putative su 99.1 8.2E-10 1.8E-14 107.2 14.7 115 242-357 28-153 (372)
67 PRK10892 D-arabinose 5-phospha 99.1 1.9E-09 4E-14 103.0 14.7 114 243-358 35-149 (326)
68 PF13580 SIS_2: SIS domain; PD 99.1 8.3E-11 1.8E-15 98.2 3.9 87 75-165 36-138 (138)
69 cd05006 SIS_GmhA Phosphoheptos 99.1 3E-09 6.4E-14 92.6 13.8 114 244-358 23-156 (177)
70 PRK11337 DNA-binding transcrip 99.1 3E-09 6.5E-14 100.0 14.0 115 242-358 128-242 (292)
71 PRK15482 transcriptional regul 99.0 4.4E-09 9.5E-14 98.6 14.8 116 242-359 123-238 (285)
72 PRK10886 DnaA initiator-associ 99.0 9.9E-09 2.1E-13 90.4 14.7 114 244-358 31-167 (196)
73 PRK13938 phosphoheptose isomer 99.0 7.8E-09 1.7E-13 91.1 14.1 114 243-358 34-168 (196)
74 PRK13937 phosphoheptose isomer 99.0 1.1E-08 2.4E-13 89.9 14.2 116 242-358 26-161 (188)
75 PRK00414 gmhA phosphoheptose i 99.0 1.2E-08 2.6E-13 90.0 13.9 112 244-358 34-166 (192)
76 COG0449 GlmS Glucosamine 6-pho 99.0 7.3E-09 1.6E-13 103.7 13.9 136 223-360 248-387 (597)
77 cd05015 SIS_PGI_1 Phosphogluco 99.0 3E-09 6.4E-14 90.9 9.7 92 75-176 21-127 (158)
78 PRK11557 putative DNA-binding 99.0 8.1E-09 1.8E-13 96.4 13.2 110 242-356 116-228 (278)
79 PRK11302 DNA-binding transcrip 99.0 8.1E-09 1.8E-13 96.6 12.7 112 242-356 116-227 (284)
80 COG4821 Uncharacterized protei 99.0 7E-09 1.5E-13 88.9 10.9 56 126-181 100-166 (243)
81 TIGR00441 gmhA phosphoheptose 98.9 2.7E-09 6E-14 90.7 7.6 113 245-359 2-135 (154)
82 PRK13936 phosphoheptose isomer 98.9 3E-08 6.4E-13 87.8 13.4 116 242-358 31-169 (197)
83 cd04795 SIS SIS domain. SIS (S 98.8 2.2E-08 4.8E-13 76.1 6.7 80 257-337 1-81 (87)
84 TIGR00393 kpsF KpsF/GutQ famil 98.7 7.8E-08 1.7E-12 89.2 10.7 100 256-357 2-101 (268)
85 cd05017 SIS_PGI_PMI_1 The memb 98.7 1.3E-07 2.9E-12 76.7 10.6 96 256-358 1-100 (119)
86 PRK14101 bifunctional glucokin 98.7 1.5E-07 3.4E-12 97.7 13.4 113 241-356 455-567 (638)
87 PRK05441 murQ N-acetylmuramic 98.6 5.4E-07 1.2E-11 84.8 13.5 116 243-359 51-187 (299)
88 PRK02947 hypothetical protein; 98.6 3.7E-07 8E-12 83.6 12.0 112 244-356 30-170 (246)
89 cd05007 SIS_Etherase N-acetylm 98.6 4.8E-07 1E-11 83.4 11.6 116 243-359 38-174 (257)
90 PRK08674 bifunctional phosphog 98.6 7.7E-07 1.7E-11 85.4 12.4 127 223-357 4-134 (337)
91 PRK09533 bifunctional transald 98.6 5.4E-06 1.2E-10 88.1 19.7 92 75-176 456-561 (948)
92 COG0279 GmhA Phosphoheptose is 98.4 1.6E-05 3.4E-10 66.8 13.5 127 226-359 19-165 (176)
93 PF10432 bact-PGI_C: Bacterial 98.3 3.6E-06 7.7E-11 71.5 9.1 105 241-347 5-119 (155)
94 PRK12570 N-acetylmuramic acid- 98.3 2.1E-05 4.4E-10 74.0 14.6 115 243-359 47-183 (296)
95 TIGR00274 N-acetylmuramic acid 98.2 2.3E-05 4.9E-10 73.5 13.2 114 244-359 47-182 (291)
96 TIGR02128 G6PI_arch bifunction 98.2 2.2E-05 4.7E-10 74.3 12.5 105 247-358 14-123 (308)
97 KOG1268|consensus 98.1 1.6E-05 3.5E-10 77.5 10.0 310 1-360 4-459 (670)
98 PRK03868 glucose-6-phosphate i 98.1 1.8E-05 3.8E-10 77.6 10.1 93 75-176 59-163 (410)
99 PF13580 SIS_2: SIS domain; PD 98.0 3.3E-05 7.2E-10 64.3 9.0 94 244-338 25-138 (138)
100 cd05015 SIS_PGI_1 Phosphogluco 98.0 4E-05 8.8E-10 65.4 9.1 111 243-356 6-138 (158)
101 cd05637 SIS_PGI_PMI_2 The memb 97.9 7.3E-05 1.6E-09 61.8 9.3 104 243-347 2-110 (132)
102 COG0166 Pgi Glucose-6-phosphat 97.9 0.00063 1.4E-08 67.1 16.5 202 75-298 80-306 (446)
103 PRK14096 pgi glucose-6-phospha 97.5 0.0013 2.7E-08 66.3 12.8 47 129-176 167-221 (528)
104 COG2103 Predicted sugar phosph 97.3 0.003 6.6E-08 57.1 11.3 122 231-360 36-186 (298)
105 PRK14095 pgi glucose-6-phospha 97.3 0.0012 2.7E-08 66.4 9.8 47 130-177 204-258 (533)
106 PRK00973 glucose-6-phosphate i 97.3 0.0015 3.3E-08 64.7 9.7 47 130-176 132-186 (446)
107 COG4821 Uncharacterized protei 96.7 0.034 7.3E-07 48.5 11.9 110 243-356 27-168 (243)
108 cd05010 SIS_AgaS_like AgaS-lik 96.5 0.032 6.9E-07 47.1 10.1 81 77-166 1-88 (151)
109 PF01418 HTH_6: Helix-turn-hel 96.1 0.0011 2.4E-08 49.3 -0.6 20 18-37 49-68 (77)
110 PRK03868 glucose-6-phosphate i 95.7 0.062 1.3E-06 52.9 9.3 103 253-357 57-175 (410)
111 PRK14097 pgi glucose-6-phospha 95.5 0.091 2E-06 52.4 9.9 54 129-182 134-201 (448)
112 PLN02649 glucose-6-phosphate i 95.4 0.37 7.9E-06 49.3 13.9 46 129-176 204-259 (560)
113 PRK00179 pgi glucose-6-phospha 95.0 0.33 7.3E-06 49.5 12.3 53 129-182 197-263 (548)
114 PF00342 PGI: Phosphoglucose i 94.6 0.6 1.3E-05 47.1 12.8 98 76-182 98-214 (486)
115 PRK09533 bifunctional transald 94.4 0.28 6.1E-06 53.0 10.4 105 242-348 441-560 (948)
116 PF10740 DUF2529: Protein of u 94.3 0.24 5.3E-06 42.2 7.7 57 127-183 78-136 (172)
117 PF10740 DUF2529: Protein of u 93.9 0.86 1.9E-05 39.0 10.4 105 244-354 28-134 (172)
118 PRK14095 pgi glucose-6-phospha 93.3 0.43 9.4E-06 48.4 8.9 98 254-355 151-265 (533)
119 PRK14096 pgi glucose-6-phospha 93.1 0.64 1.4E-05 47.1 9.9 102 254-357 114-234 (528)
120 PTZ00430 glucose-6-phosphate i 92.4 0.65 1.4E-05 47.4 8.9 39 129-167 199-248 (552)
121 PRK00973 glucose-6-phosphate i 91.8 0.85 1.8E-05 45.4 8.8 57 300-357 129-198 (446)
122 PTZ00254 40S ribosomal protein 88.7 13 0.00028 34.0 12.8 112 44-182 50-164 (249)
123 cd02767 MopB_ydeP The MopB_yde 87.4 3.6 7.9E-05 42.5 9.6 125 130-265 163-319 (574)
124 COG1029 FwdB Formylmethanofura 87.3 3.7 8E-05 39.3 8.6 118 240-359 65-205 (429)
125 TIGR01012 Sa_S2_E_A ribosomal 86.2 23 0.0005 31.2 12.8 110 44-181 41-153 (196)
126 cd02766 MopB_3 The MopB_3 CD i 86.2 3.3 7.2E-05 42.0 8.5 123 130-265 157-291 (501)
127 cd02767 MopB_ydeP The MopB_yde 85.3 4.2 9.1E-05 42.0 8.8 119 240-359 83-237 (574)
128 cd02759 MopB_Acetylene-hydrata 84.3 20 0.00044 36.0 13.1 56 129-185 159-217 (477)
129 TIGR01701 Fdhalpha-like oxidor 83.7 9.5 0.00021 40.8 10.8 125 130-265 198-356 (743)
130 COG0166 Pgi Glucose-6-phosphat 83.5 9.1 0.0002 38.2 9.9 114 243-357 66-197 (446)
131 TIGR01701 Fdhalpha-like oxidor 83.2 8.6 0.00019 41.1 10.3 119 240-359 118-273 (743)
132 cd02753 MopB_Formate-Dh-H Form 82.1 16 0.00034 37.0 11.4 124 129-265 155-290 (512)
133 PRK04020 rps2P 30S ribosomal p 80.5 13 0.00027 33.1 8.7 111 44-182 47-160 (204)
134 TIGR01591 Fdh-alpha formate de 79.8 8 0.00017 40.6 8.6 123 130-265 155-289 (671)
135 cd02769 MopB_DMSOR-BSOR-TMAOR 79.3 6.8 0.00015 40.8 7.8 107 146-265 197-319 (609)
136 cd02762 MopB_1 The MopB_1 CD i 79.1 6.4 0.00014 40.3 7.4 104 149-265 183-296 (539)
137 TIGR00315 cdhB CO dehydrogenas 77.8 20 0.00043 30.6 8.8 44 245-288 18-62 (162)
138 PRK09939 putative oxidoreducta 77.6 16 0.00034 39.2 9.9 55 130-184 208-281 (759)
139 cd02755 MopB_Thiosulfate-R-lik 76.8 13 0.00029 37.0 8.8 58 128-186 154-214 (454)
140 PRK09939 putative oxidoreducta 75.5 14 0.0003 39.6 8.8 118 240-359 127-283 (759)
141 PF00289 CPSase_L_chain: Carba 75.4 5.6 0.00012 31.5 4.6 47 135-183 5-53 (110)
142 TIGR00509 bisC_fam molybdopter 75.4 9.2 0.0002 41.0 7.6 106 146-264 193-314 (770)
143 cd02754 MopB_Nitrate-R-NapA-li 74.7 16 0.00035 37.5 9.0 56 130-186 157-216 (565)
144 PRK15488 thiosulfate reductase 73.7 69 0.0015 34.3 13.7 57 129-186 195-255 (759)
145 cd01410 SIRT7 SIRT7: Eukaryoti 73.4 10 0.00022 33.7 6.2 52 128-180 153-204 (206)
146 cd01413 SIR2_Af2 SIR2_Af2: Arc 73.1 7.3 0.00016 35.0 5.3 52 128-180 169-220 (222)
147 TIGR01973 NuoG NADH-quinone ox 72.6 33 0.00071 35.7 10.7 119 240-359 288-420 (603)
148 cd01409 SIRT4 SIRT4: Eukaryoti 72.0 8.5 0.00018 35.5 5.6 55 128-183 202-256 (260)
149 cd02751 MopB_DMSOR-like The Mo 70.5 12 0.00027 38.8 7.0 54 131-185 170-234 (609)
150 cd02770 MopB_DmsA-EC This CD ( 70.1 22 0.00048 37.1 8.8 55 130-185 166-226 (617)
151 CHL00067 rps2 ribosomal protei 69.5 33 0.00072 31.0 8.7 48 129-182 160-207 (230)
152 PRK14097 pgi glucose-6-phospha 69.0 38 0.00083 33.9 9.8 56 302-357 135-203 (448)
153 PRK05299 rpsB 30S ribosomal pr 68.1 35 0.00077 31.4 8.7 48 129-182 156-203 (258)
154 cd02765 MopB_4 The MopB_4 CD i 68.1 25 0.00054 36.3 8.6 56 130-186 159-216 (567)
155 KOG2446|consensus 65.0 8.2 0.00018 37.9 3.9 73 76-155 152-228 (546)
156 PTZ00409 Sir2 (Silent Informat 64.7 15 0.00031 34.2 5.5 53 128-181 197-250 (271)
157 COG4015 Predicted dinucleotide 64.7 19 0.00041 30.7 5.6 36 128-163 104-140 (217)
158 PRK00179 pgi glucose-6-phospha 64.6 54 0.0012 33.7 10.0 103 254-357 145-265 (548)
159 cd00368 Molybdopterin-Binding 63.9 37 0.00081 32.4 8.5 39 320-359 175-213 (374)
160 TIGR00288 conserved hypothetic 63.8 22 0.00047 30.3 5.9 52 129-183 104-157 (160)
161 PRK14138 NAD-dependent deacety 63.4 12 0.00025 34.3 4.5 55 128-183 176-230 (244)
162 PF00318 Ribosomal_S2: Ribosom 63.2 52 0.0011 29.2 8.6 47 130-182 143-189 (211)
163 PRK00945 acetyl-CoA decarbonyl 63.2 41 0.00089 28.9 7.6 42 246-287 26-69 (171)
164 COG1435 Tdk Thymidine kinase [ 62.7 11 0.00024 33.1 4.1 33 138-170 13-45 (201)
165 TIGR00288 conserved hypothetic 62.4 31 0.00068 29.3 6.6 51 306-359 108-160 (160)
166 PLN02649 glucose-6-phosphate i 61.8 75 0.0016 32.8 10.4 26 131-156 47-73 (560)
167 TIGR01011 rpsB_bact ribosomal 61.5 56 0.0012 29.4 8.5 48 129-182 154-201 (225)
168 cd00714 GFAT Glutamine amidotr 61.1 5.3 0.00012 35.6 1.9 50 43-92 144-194 (215)
169 cd00368 Molybdopterin-Binding 60.5 71 0.0015 30.5 9.8 54 130-184 156-211 (374)
170 PTZ00254 40S ribosomal protein 59.3 1.4E+02 0.0031 27.3 12.5 80 251-341 68-152 (249)
171 cd02754 MopB_Nitrate-R-NapA-li 59.2 76 0.0016 32.6 10.2 55 304-359 158-216 (565)
172 cd02766 MopB_3 The MopB_3 CD i 59.1 41 0.00089 34.1 8.1 39 320-359 176-214 (501)
173 cd02753 MopB_Formate-Dh-H Form 58.9 61 0.0013 32.8 9.4 38 321-359 176-213 (512)
174 cd02761 MopB_FmdB-FwdB The Mop 58.4 36 0.00079 33.2 7.5 31 328-359 166-196 (415)
175 COG1763 MobB Molybdopterin-gua 58.4 16 0.00034 31.2 4.1 33 134-166 7-39 (161)
176 cd01425 RPS2 Ribosomal protein 58.3 62 0.0013 28.3 8.1 50 127-182 124-173 (193)
177 PRK13532 nitrate reductase cat 58.2 74 0.0016 34.5 10.3 56 130-186 206-265 (830)
178 TIGR03479 DMSO_red_II_alp DMSO 58.2 59 0.0013 35.7 9.6 56 130-186 224-281 (912)
179 cd02768 MopB_NADH-Q-OR-NuoG2 M 55.5 1.1E+02 0.0024 29.4 10.3 34 321-357 168-202 (386)
180 COG0052 RpsB Ribosomal protein 54.4 51 0.0011 30.1 6.9 46 131-182 157-202 (252)
181 cd02757 MopB_Arsenate-R This C 54.3 2.5E+02 0.0055 28.6 13.6 58 128-186 160-221 (523)
182 PF03205 MobB: Molybdopterin g 54.3 16 0.00034 30.2 3.5 35 133-167 4-38 (140)
183 cd02763 MopB_2 The MopB_2 CD i 54.3 1.2E+02 0.0025 32.3 10.6 54 130-184 155-210 (679)
184 PF01936 NYN: NYN domain; Int 53.8 15 0.00033 29.8 3.4 47 132-181 97-145 (146)
185 cd02760 MopB_Phenylacetyl-CoA- 53.2 1.3E+02 0.0027 32.5 10.9 56 130-186 173-231 (760)
186 PF00289 CPSase_L_chain: Carba 52.9 15 0.00033 29.0 3.0 47 307-356 5-53 (110)
187 PRK12311 rpsB 30S ribosomal pr 52.4 91 0.002 29.8 8.6 48 129-182 151-198 (326)
188 cd02750 MopB_Nitrate-R-NarG-li 50.6 1.8E+02 0.0038 29.1 11.0 56 129-185 169-226 (461)
189 TIGR01591 Fdh-alpha formate de 50.3 87 0.0019 32.9 9.1 40 319-359 173-212 (671)
190 cd02750 MopB_Nitrate-R-NarG-li 49.5 72 0.0016 31.9 8.0 37 322-359 191-227 (461)
191 TIGR01553 formate-DH-alph form 49.4 1.2E+02 0.0025 33.9 10.0 56 130-186 221-278 (1009)
192 cd03144 GATase1_ScBLP_like Typ 48.6 1.2E+02 0.0026 24.2 7.5 76 257-338 3-85 (114)
193 PF00342 PGI: Phosphoglucose i 46.5 19 0.0004 36.5 3.2 103 255-357 97-216 (486)
194 PF13344 Hydrolase_6: Haloacid 46.4 14 0.00031 28.6 1.9 33 144-176 17-49 (101)
195 TIGR01470 cysG_Nterm siroheme 46.3 24 0.00052 31.3 3.5 45 108-152 92-138 (205)
196 PF00384 Molybdopterin: Molybd 46.0 1.1E+02 0.0023 30.0 8.5 38 321-359 132-169 (432)
197 TIGR02166 dmsA_ynfE anaerobic 45.3 1.1E+02 0.0025 32.8 9.2 56 130-186 214-276 (797)
198 cd01407 SIR2-fam SIR2 family o 44.4 56 0.0012 29.1 5.7 51 129-180 166-216 (218)
199 PRK05568 flavodoxin; Provision 43.5 49 0.0011 26.8 4.9 49 131-180 3-54 (142)
200 PF05198 IF3_N: Translation in 43.4 32 0.0007 25.3 3.3 45 133-177 14-61 (76)
201 COG1648 CysG Siroheme synthase 43.3 44 0.00096 29.7 4.8 45 108-152 95-141 (210)
202 cd02755 MopB_Thiosulfate-R-lik 43.2 1.4E+02 0.0031 29.6 9.0 38 321-359 177-214 (454)
203 PF12682 Flavodoxin_4: Flavodo 43.1 21 0.00045 30.1 2.6 32 132-165 2-33 (156)
204 PF14824 Sirohm_synth_M: Siroh 43.0 40 0.00086 20.1 2.9 23 130-152 2-24 (30)
205 cd02752 MopB_Formate-Dh-Na-lik 42.6 1.2E+02 0.0026 31.9 8.6 56 304-360 170-228 (649)
206 PF02887 PK_C: Pyruvate kinase 42.4 26 0.00055 27.8 2.9 32 132-168 18-50 (117)
207 TIGR01142 purT phosphoribosylg 42.3 47 0.001 32.0 5.3 37 146-182 11-47 (380)
208 PTZ00408 NAD-dependent deacety 42.0 66 0.0014 29.3 5.8 52 128-180 170-221 (242)
209 smart00481 POLIIIAc DNA polyme 41.5 33 0.00071 24.0 3.1 23 145-167 16-38 (67)
210 cd06167 LabA_like LabA_like pr 41.2 34 0.00075 28.0 3.6 44 130-176 99-144 (149)
211 PRK09004 FMN-binding protein M 41.1 93 0.002 25.8 6.2 30 133-162 5-35 (146)
212 PRK05562 precorrin-2 dehydroge 40.8 35 0.00077 30.7 3.8 43 109-151 109-153 (223)
213 PF14419 SPOUT_MTase_2: AF2226 40.6 62 0.0013 27.4 4.8 56 302-357 92-150 (173)
214 cd02752 MopB_Formate-Dh-Na-lik 40.0 1.6E+02 0.0034 31.1 8.9 56 129-185 168-226 (649)
215 cd02759 MopB_Acetylene-hydrata 39.6 1.5E+02 0.0033 29.7 8.6 38 321-359 181-218 (477)
216 cd01408 SIRT1 SIRT1: Eukaryoti 39.5 62 0.0013 29.3 5.2 54 128-183 173-228 (235)
217 PF01936 NYN: NYN domain; Int 39.0 57 0.0012 26.3 4.6 47 304-354 97-145 (146)
218 PF01993 MTD: methylene-5,6,7, 38.8 63 0.0014 29.4 4.9 41 130-170 59-99 (276)
219 COG0771 MurD UDP-N-acetylmuram 37.7 1.5E+02 0.0032 29.8 7.9 31 74-117 7-37 (448)
220 PRK06756 flavodoxin; Provision 37.7 65 0.0014 26.5 4.8 31 132-162 4-35 (148)
221 TIGR01553 formate-DH-alph form 37.7 1.6E+02 0.0035 32.9 8.9 55 304-359 222-278 (1009)
222 COG1136 SalX ABC-type antimicr 37.4 35 0.00077 30.7 3.2 42 142-185 177-219 (226)
223 PF00384 Molybdopterin: Molybd 37.4 79 0.0017 30.8 6.1 57 128-185 109-168 (432)
224 PRK08462 biotin carboxylase; V 37.4 47 0.001 33.0 4.5 44 137-182 9-54 (445)
225 PRK00994 F420-dependent methyl 37.0 51 0.0011 29.9 4.0 41 130-170 60-100 (277)
226 cd01412 SIRT5_Af1_CobB SIRT5_A 36.6 1.1E+02 0.0024 27.2 6.4 53 128-181 162-214 (224)
227 TIGR03129 one_C_dehyd_B formyl 35.6 1.9E+02 0.004 28.2 8.4 31 328-359 172-202 (421)
228 COG3981 Predicted acetyltransf 35.5 48 0.001 28.5 3.5 34 140-173 112-146 (174)
229 TIGR01012 Sa_S2_E_A ribosomal 35.4 3.1E+02 0.0068 24.1 12.1 77 254-341 61-142 (196)
230 COG0290 InfC Translation initi 34.3 65 0.0014 27.6 4.1 45 134-178 21-68 (176)
231 PF00265 TK: Thymidine kinase; 34.3 70 0.0015 27.6 4.5 37 134-170 6-42 (176)
232 PRK00481 NAD-dependent deacety 34.2 90 0.0019 28.3 5.4 52 128-180 175-226 (242)
233 TIGR01161 purK phosphoribosyla 34.1 68 0.0015 30.7 4.9 38 144-181 9-46 (352)
234 PRK06718 precorrin-2 dehydroge 33.7 49 0.0011 29.2 3.5 42 110-151 94-137 (202)
235 cd04907 ACT_ThrD-I_2 Second of 33.6 60 0.0013 24.0 3.5 36 129-166 39-74 (81)
236 KOG2091|consensus 32.6 32 0.0007 32.5 2.2 23 10-32 166-188 (392)
237 PTZ00430 glucose-6-phosphate i 32.6 1.7E+02 0.0036 30.2 7.5 27 131-157 42-69 (552)
238 COG2179 Predicted hydrolase of 32.3 63 0.0014 27.7 3.7 51 133-183 38-91 (175)
239 TIGR02164 torA trimethylamine- 31.7 1.5E+02 0.0033 32.1 7.6 95 157-264 251-361 (822)
240 PRK14990 anaerobic dimethyl su 31.4 2E+02 0.0043 31.1 8.4 56 130-186 231-293 (814)
241 PF00325 Crp: Bacterial regula 31.2 51 0.0011 19.9 2.2 23 10-32 2-31 (32)
242 cd02765 MopB_4 The MopB_4 CD i 31.1 1.7E+02 0.0036 30.2 7.4 55 304-359 160-216 (567)
243 COG1029 FwdB Formylmethanofura 31.0 5.1E+02 0.011 25.3 10.4 27 158-184 177-203 (429)
244 CHL00199 infC translation init 30.6 76 0.0017 27.6 4.0 46 133-178 26-74 (182)
245 PRK04020 rps2P 30S ribosomal p 30.1 3.9E+02 0.0085 23.7 11.8 78 253-341 66-148 (204)
246 PF00205 TPP_enzyme_M: Thiamin 30.1 45 0.00097 27.0 2.5 43 245-287 2-45 (137)
247 PRK00028 infC translation init 29.8 77 0.0017 27.4 4.0 45 133-177 21-68 (177)
248 PRK08341 amidophosphoribosyltr 29.8 24 0.00053 35.2 1.0 47 43-92 146-195 (442)
249 PRK04663 murD UDP-N-acetylmura 28.8 1.4E+02 0.0031 29.5 6.3 15 75-89 8-22 (438)
250 PF12641 Flavodoxin_3: Flavodo 28.6 1E+02 0.0023 26.1 4.6 44 133-179 1-44 (160)
251 PRK05723 flavodoxin; Provision 28.5 1.6E+02 0.0035 24.5 5.7 31 133-163 4-35 (151)
252 TIGR01087 murD UDP-N-acetylmur 28.5 2.3E+02 0.0049 27.9 7.7 12 76-87 1-12 (433)
253 cd02772 MopB_NDH-1_NuoG2 MopB_ 28.3 3.2E+02 0.0069 26.6 8.6 23 319-341 170-192 (414)
254 TIGR00176 mobB molybdopterin-g 28.3 68 0.0015 26.9 3.3 32 134-165 4-35 (155)
255 TIGR00514 accC acetyl-CoA carb 28.1 1E+02 0.0022 30.6 5.1 41 141-181 9-51 (449)
256 TIGR00168 infC translation ini 28.0 88 0.0019 26.7 4.0 46 133-178 9-57 (165)
257 PRK05569 flavodoxin; Provision 27.6 1.2E+02 0.0026 24.5 4.7 30 131-160 3-33 (141)
258 PRK15102 trimethylamine N-oxid 27.5 2.1E+02 0.0047 31.0 7.8 34 231-264 330-364 (825)
259 TIGR01706 NAPA periplasmic nit 27.5 3.3E+02 0.0072 29.6 9.2 57 129-186 205-265 (830)
260 PRK14495 putative molybdopteri 27.2 75 0.0016 31.7 3.8 31 134-164 6-36 (452)
261 PRK08105 flavodoxin; Provision 27.2 1.3E+02 0.0028 25.0 4.9 33 133-165 5-38 (149)
262 COG0647 NagD Predicted sugar p 27.1 74 0.0016 29.5 3.6 26 143-168 26-51 (269)
263 COG0028 IlvB Thiamine pyrophos 26.9 1E+02 0.0022 31.7 5.0 46 242-287 188-234 (550)
264 cd02764 MopB_PHLH The MopB_PHL 26.9 2.3E+02 0.005 28.8 7.6 54 130-184 196-259 (524)
265 COG3383 Uncharacterized anaero 26.5 3.1E+02 0.0068 29.5 8.1 123 130-263 420-553 (978)
266 TIGR01753 flav_short flavodoxi 26.3 1.2E+02 0.0025 24.3 4.4 47 133-180 2-51 (140)
267 PRK13532 nitrate reductase cat 25.9 4.7E+02 0.01 28.4 10.1 31 328-359 235-265 (830)
268 cd02758 MopB_Tetrathionate-Ra 25.8 4.9E+02 0.011 27.9 10.0 55 130-185 211-274 (735)
269 PRK07860 NADH dehydrogenase su 25.7 4.3E+02 0.0094 28.6 9.7 35 325-359 401-435 (797)
270 TIGR01685 MDP-1 magnesium-depe 25.7 1.3E+02 0.0027 25.9 4.6 50 290-339 19-70 (174)
271 PRK09271 flavodoxin; Provision 25.2 3.8E+02 0.0082 22.3 7.5 28 133-160 4-32 (160)
272 cd00296 SIR2 SIR2 superfamily 25.1 1.6E+02 0.0035 25.9 5.4 51 128-179 167-219 (222)
273 PRK06019 phosphoribosylaminoim 25.1 1.3E+02 0.0029 29.0 5.2 36 147-182 15-50 (372)
274 cd03213 ABCG_EPDR ABCG transpo 25.1 89 0.0019 27.0 3.6 42 143-184 147-188 (194)
275 PF06057 VirJ: Bacterial virul 24.9 1.3E+02 0.0028 26.5 4.5 36 303-338 2-37 (192)
276 cd01411 SIR2H SIR2H: Uncharact 24.9 1.2E+02 0.0027 27.1 4.6 52 128-181 169-220 (225)
277 cd02762 MopB_1 The MopB_1 CD i 24.8 4.3E+02 0.0093 26.9 9.1 37 322-359 183-219 (539)
278 TIGR01706 NAPA periplasmic nit 24.8 4.2E+02 0.009 28.8 9.4 31 328-359 235-265 (830)
279 PRK14493 putative bifunctional 24.6 66 0.0014 29.9 2.8 33 134-167 6-38 (274)
280 PRK05333 NAD-dependent deacety 24.5 1.3E+02 0.0028 28.1 4.8 53 128-181 212-264 (285)
281 PRK07178 pyruvate carboxylase 24.4 1.5E+02 0.0031 29.9 5.5 43 141-183 9-53 (472)
282 TIGR01675 plant-AP plant acid 24.3 87 0.0019 28.3 3.5 28 142-169 121-148 (229)
283 cd03234 ABCG_White The White s 24.3 1.1E+02 0.0023 27.1 4.1 42 143-184 179-220 (226)
284 PF10432 bact-PGI_C: Bacterial 24.1 2.1E+02 0.0045 24.0 5.6 92 76-176 19-121 (155)
285 cd01120 RecA-like_NTPases RecA 23.9 1.4E+02 0.0029 24.1 4.4 27 144-170 114-140 (165)
286 PRK02006 murD UDP-N-acetylmura 23.9 1.7E+02 0.0036 29.6 5.9 13 75-87 8-20 (498)
287 CHL00073 chlN photochlorophyll 23.8 7.6E+02 0.016 24.9 11.7 108 48-174 81-233 (457)
288 PRK06719 precorrin-2 dehydroge 23.7 95 0.0021 26.1 3.4 42 111-152 95-138 (157)
289 TIGR01754 flav_RNR ribonucleot 23.7 1E+02 0.0022 25.0 3.6 29 132-160 3-32 (140)
290 PF05372 Delta_lysin: Delta ly 23.4 50 0.0011 18.4 1.1 9 16-24 16-24 (25)
291 PRK13762 tRNA-modifying enzyme 23.1 94 0.002 29.6 3.6 32 134-165 132-166 (322)
292 COG0561 Cof Predicted hydrolas 23.0 96 0.0021 28.1 3.6 34 142-175 21-54 (264)
293 PTZ00293 thymidine kinase; Pro 22.9 1.1E+02 0.0024 27.3 3.8 38 133-170 8-45 (211)
294 TIGR02463 MPGP_rel mannosyl-3- 22.9 1.2E+02 0.0026 26.5 4.1 31 142-172 17-47 (221)
295 PRK00913 multifunctional amino 22.5 5.7E+02 0.012 25.9 9.1 36 109-146 294-332 (483)
296 PRK12359 flavodoxin FldB; Prov 22.3 1.6E+02 0.0034 25.3 4.5 31 133-165 4-34 (172)
297 PRK00421 murC UDP-N-acetylmura 22.1 1.6E+02 0.0035 29.3 5.2 14 75-88 8-21 (461)
298 PF14258 DUF4350: Domain of un 22.0 2.1E+02 0.0045 20.0 4.5 55 276-336 13-69 (70)
299 PRK10637 cysG siroheme synthas 21.9 92 0.002 31.2 3.5 44 109-152 96-141 (457)
300 COG1131 CcmA ABC-type multidru 21.8 1.2E+02 0.0026 28.3 4.1 42 315-356 171-212 (293)
301 TIGR00474 selA seryl-tRNA(sec) 21.8 7.6E+02 0.017 24.7 9.9 36 127-162 207-250 (454)
302 cd02770 MopB_DmsA-EC This CD ( 21.6 2.1E+02 0.0045 29.8 6.2 38 321-359 189-227 (617)
303 cd06549 GH18_trifunctional GH1 21.6 1.6E+02 0.0035 27.5 4.9 49 9-57 85-135 (298)
304 PF10087 DUF2325: Uncharacteri 21.3 1.5E+02 0.0033 22.4 3.9 41 126-166 44-84 (97)
305 TIGR01689 EcbF-BcbF capsule bi 21.2 1.3E+02 0.0028 24.4 3.6 30 141-170 24-53 (126)
306 PRK01710 murD UDP-N-acetylmura 21.2 2.5E+02 0.0055 27.9 6.5 13 75-87 15-27 (458)
307 COG0846 SIR2 NAD-dependent pro 21.1 87 0.0019 28.7 2.8 52 128-180 180-231 (250)
308 PF03767 Acid_phosphat_B: HAD 21.1 67 0.0015 28.9 2.1 25 145-169 119-143 (229)
309 COG1107 Archaea-specific RecJ- 21.0 4.7E+02 0.01 27.2 8.0 96 243-339 328-452 (715)
310 PRK10513 sugar phosphate phosp 21.0 1.1E+02 0.0025 27.6 3.7 32 142-173 21-52 (270)
311 PF10609 ParA: ParA/MinD ATPas 20.9 2.5E+02 0.0054 20.9 4.7 40 139-178 35-74 (81)
312 KOG4039|consensus 20.8 1.2E+02 0.0025 26.6 3.3 25 144-168 109-133 (238)
313 PRK03803 murD UDP-N-acetylmura 20.8 3.9E+02 0.0084 26.4 7.7 15 74-88 6-20 (448)
314 TIGR00333 nrdI ribonucleoside- 20.7 1.1E+02 0.0025 24.8 3.1 25 134-164 1-27 (125)
315 PRK12702 mannosyl-3-phosphogly 20.7 7.2E+02 0.016 23.5 12.8 30 142-171 19-48 (302)
316 cd01481 vWA_collagen_alpha3-VI 20.7 2.8E+02 0.0061 23.2 5.8 51 306-356 109-164 (165)
317 PRK14752 delta-hemolysin; Prov 20.7 55 0.0012 20.5 1.0 11 16-26 34-44 (44)
318 COG1131 CcmA ABC-type multidru 20.6 1.1E+02 0.0023 28.7 3.4 43 143-185 172-214 (293)
319 PRK12311 rpsB 30S ribosomal pr 20.4 7.6E+02 0.016 23.6 11.4 22 320-341 165-186 (326)
320 TIGR03479 DMSO_red_II_alp DMSO 20.4 5.6E+02 0.012 28.2 9.4 38 321-359 244-281 (912)
321 PRK10751 molybdopterin-guanine 20.4 1E+02 0.0023 26.5 3.0 33 133-165 10-42 (173)
322 PF08901 DUF1847: Protein of u 20.3 69 0.0015 27.1 1.8 20 9-31 38-57 (157)
323 COG4992 ArgD Ornithine/acetylo 20.3 5E+02 0.011 25.6 7.9 51 242-295 84-141 (404)
324 PRK07269 cystathionine gamma-s 20.3 7.7E+02 0.017 23.7 9.6 42 140-181 149-194 (364)
325 PRK10530 pyridoxal phosphate ( 20.2 1.2E+02 0.0026 27.4 3.7 31 142-172 21-51 (272)
326 PRK01158 phosphoglycolate phos 20.1 1.3E+02 0.0028 26.5 3.7 32 142-173 21-52 (230)
327 PRK08463 acetyl-CoA carboxylas 20.1 2.1E+02 0.0045 28.9 5.6 45 137-183 7-53 (478)
No 1
>KOG1268|consensus
Probab=100.00 E-value=7.3e-56 Score=418.98 Aligned_cols=262 Identities=74% Similarity=1.186 Sum_probs=251.4
Q ss_pred HHHHHHHHhcCCceEEEecccccccCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeE
Q psy1915 100 ATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGI 179 (361)
Q Consensus 100 ~a~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l 179 (361)
+.+.+++++.++|+.+..+++|+....++-.+|+++++||||+|.+++-|+++++++||-+|+|||..+|.+++..+|.+
T Consensus 372 A~R~ilEEL~eiPV~vElAsDflDR~~pifRdDvc~FvSqSGETaDtllaL~Yc~~~gAl~vGvtNtvGSsIsR~thCGv 451 (670)
T KOG1268|consen 372 ATRPILEELSEIPVSVELASDFLDRNTPIFRDDVCFFVSQSGETADTLLALRYCKERGALTVGVTNTVGSSISRETHCGV 451 (670)
T ss_pred HHHHHHHHHhcCCeeeehhhhhHhcCCCceeccEEEEEecCCchHHHHHHHHHHHhcCceEEEeecccCcccccccccce
Confidence 78999999999999999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred EcccCCCcccccchhHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhcCCeEEE
Q psy1915 180 HINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLL 259 (361)
Q Consensus 180 ~~~~~~e~~~~~t~s~t~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~a~~l~~~~~i~~ 259 (361)
.+++|||.++++||+||+|...+.|++++++..+.+.++++.++++.|..+|+.++++++.++.++++|.++.+.+.+.+
T Consensus 452 HiNaGpEigvAsTKaYTSQ~i~lvm~aL~~s~d~is~~~RR~eIi~gL~~l~~~ikevL~l~~~i~~la~~l~~~~slLi 531 (670)
T KOG1268|consen 452 HINAGPEIGVASTKAYTSQYIALVMFALWMSEDRVSKQERRKEIIDGLKDLPSQIKEVLELDPKIKDLAKELKDHKSLLI 531 (670)
T ss_pred eccCCCccceeechHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhccceEEE
Confidence 99999999999999999999999999999999888888899999999999999999999988999999999999999999
Q ss_pred EeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecC
Q psy1915 260 MGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEK 339 (361)
Q Consensus 260 iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~ 339 (361)
+|+|++|++|+|||||++|++++|+++.-++|+.|||.+++|++.+++++...|....+...+++++.+|+|+.|.|+++
T Consensus 532 ~GRGy~~at~lEGAlKiKEisymHsEgilagElkHgplAlvd~~~pi~~i~~~D~~~~K~~na~qQv~aRkG~pIiic~~ 611 (670)
T KOG1268|consen 532 MGRGYNFATALEGALKIKEISYMHSEGILAGELKHGPLALVDENLPIIMIATRDAVYPKCQNAIQQVTARKGRPIIICDK 611 (670)
T ss_pred ecccccHHHHhhhhhhhheeeehhhchhhhcccccCceeEecCCCCEEEEEecCcccHHHHHHHHHHHhcCCCeEEEecC
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred CCchhhhcccceEEcCCCCCCC
Q psy1915 340 GDTETQALATKTLEVPHTVDCL 361 (361)
Q Consensus 340 ~~~~~~~~~d~~i~~p~~~~~~ 361 (361)
++.+-......++.+|..+|||
T Consensus 612 ~~~~~~~~~~~~~~vP~tvDCl 633 (670)
T KOG1268|consen 612 GDKEEQKAGNKTLEVPQTVDCL 633 (670)
T ss_pred CCchhhcccceEEeCCchhhhh
Confidence 9887555567779999999986
No 2
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8.9e-55 Score=428.26 Aligned_cols=316 Identities=40% Similarity=0.642 Sum_probs=287.7
Q ss_pred HHHHHHHHHHHHHHHhhhhccCccceeeeccCCcEEEEecccc-ccccccchhhhhH-----------------------
Q psy1915 44 HLARHIAIMEGAFALCFKSKLFPGECVATRRGSPLLVGIKTKT-RLATDHIPILYGK----------------------- 99 (361)
Q Consensus 44 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~i~~~G~G~S~-~~a~~~~~~~~~~----------------------- 99 (361)
++++.+++|+++|++++.+..+|++++.+++++++++|.|... ++|+|..+.+-..
T Consensus 143 a~~~~l~~l~Gsyal~~~~~~~p~~i~~ar~~sPL~iG~g~~e~f~aSD~~a~l~~t~~~~~l~dgd~~~~~~~~v~~~~ 222 (597)
T COG0449 143 AVKKVLKRLEGSYALLCTHSDFPDELVAARKGSPLVIGVGEGENFLASDVSALLNFTRRFVYLEEGDIAKLTTDGVSIND 222 (597)
T ss_pred HHHHHHHHhcceeEEEEEecCCCCeEEEEcCCCCeEEEecCCcceEecChhhhhhhhceEEEeCCCCEEEEECCcEEEec
Confidence 7778889999999999999999999999999999999999764 5555543222000
Q ss_pred -----------------------------------------------------------------------------HHH
Q psy1915 100 -----------------------------------------------------------------------------ATR 102 (361)
Q Consensus 100 -----------------------------------------------------------------------------~a~ 102 (361)
+++
T Consensus 223 g~v~r~~~~~~~~~~~a~Kg~y~hfMlKEI~EQP~~i~~tl~~~~~~~~~~~~~~~~~~~~~rI~IvAcGTSYhAglv~k 302 (597)
T COG0449 223 GNVLRDVPVIEWDLCAAEKGGFRHFMLKEIYEQPEALRNTLQGRLDELVQNELDLDILREVDRIIIVACGTSYHAGLVAK 302 (597)
T ss_pred CeeeeeeEEeccChhHHhcCCCCchHHHHHHhhHHHHHHHHHhhhhhhhhhhhchhhhcccceEEEEECcHHHHHHHHHH
Confidence 799
Q ss_pred HHHHHhcCCceEEEecccccccCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcc
Q psy1915 103 QLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHIN 182 (361)
Q Consensus 103 ~~~~~~~g~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~ 182 (361)
|+++++.++|+.+..+++|.+..+.+.+++++|+|||||+|.+|+.+++.+|++|+++++|||.++|+|++.+|+.+.+.
T Consensus 303 y~~E~la~ipv~Ve~aSEfry~~~~~~~~~L~I~ISQSGETaDTl~ALr~ak~~G~~tlaItNv~gSti~Resd~~l~~~ 382 (597)
T COG0449 303 YFFERLAKIPVEVEEASEFRYREPALNPNTLVIAISQSGETADTLAALRLAKEQGAKTLAITNVPGSTIARESDHTLLIR 382 (597)
T ss_pred HHHHHHhCCCeEEEeechhhhhccCCCCCcEEEEEccCcccHHHHHHHHHHHHcCCCEEEEEecCCChhhcccceEEEec
Confidence 99999999999999999999888888889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccchhHHHHHHHHHHHHHHHhhhhcch-HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhcCCeEEEEe
Q psy1915 183 AGPEIGVASTKAYTSQFISLVMFALVMCEDRISL-QTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMG 261 (361)
Q Consensus 183 ~~~e~~~~~t~s~t~~~~~l~~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~a~~l~~~~~i~~iG 261 (361)
+|+|.++++||+||+|++.|++|++.+++.++.. .++.++++++|+.+|+.+++++...+.++++++.+.+.++++|+|
T Consensus 383 AGpEigVAsTKaftaQl~~L~lLal~~a~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~i~~~a~~l~~~~~~~~lG 462 (597)
T COG0449 383 AGPEIGVASTKAFTAQVLALYLLALYLAKQRGTISEEEERSLIKELQKLPNHIPKVLAAEEKIKELAKRLADAKDFFFLG 462 (597)
T ss_pred cCCceeeecchhHHHHHHHHHHHHHHHhHhhCccchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccCCEEEEc
Confidence 9999999999999999999999999999887654 567888999999999999999987778999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCC
Q psy1915 262 RGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGD 341 (361)
Q Consensus 262 ~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~ 341 (361)
+|.+|++|+||||||+|++++||++|+++|++|||+.++|++++||++.+.+.-.+++...++++++||++++.|++.++
T Consensus 463 RG~~ypvAlEgALKlKEIsYIHAEgy~aGElKHGpiALid~~~pVi~i~p~~~~~ek~~sni~Ev~aRg~~~i~i~~~~~ 542 (597)
T COG0449 463 RGVLYPVALEGALKLKEISYIHAEGYAAGELKHGPIALIDENTPVIAIAPKPDLFEKTKSNIQEVRARGGKIIVIADEGD 542 (597)
T ss_pred CCCCcHhHhhhhhhhhhheeeccccccchhhccCceEEEcCCCcEEEEeCcchHHHHHHHHHHHHHcCCCeEEEEecCCc
Confidence 99999999999999999999999999999999999999999999999999887567899999999999999999999876
Q ss_pred chhhhcccceEEcCCCCCCC
Q psy1915 342 TETQALATKTLEVPHTVDCL 361 (361)
Q Consensus 342 ~~~~~~~d~~i~~p~~~~~~ 361 (361)
.....|..+.+|.++|.|
T Consensus 543 --~~~~~~~~i~~p~~~e~l 560 (597)
T COG0449 543 --VAEDGDDLILLPEVDELL 560 (597)
T ss_pred --ccccCceEEecCCCcchh
Confidence 334568889999998864
No 3
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=100.00 E-value=7.9e-47 Score=387.90 Aligned_cols=279 Identities=52% Similarity=0.797 Sum_probs=252.9
Q ss_pred ccCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEecccccccCCCCCCCCEEEEEcCCCCcHHHHHHHHH
Q psy1915 73 RRGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRY 152 (361)
Q Consensus 73 ~~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ 152 (361)
+..+|+++|+|+|++.+. .++++++++.++++.+..+++|.+.....+++|++|+||+||+|++++++++.
T Consensus 353 ~a~rI~ivG~GtS~~aa~---------~ak~~~~kl~~i~v~v~~asef~~~~~~~~~~dlvI~ISqSGeT~dtl~Al~~ 423 (670)
T PTZ00394 353 TSRRILFIACGTSLNSCL---------AVRPLFEELVPLPISVENASDFLDRRPRIQRDDVCFFVSQSGETADTLMALQL 423 (670)
T ss_pred CCCEEEEEEechHHHHHH---------HHHHHHHHhcCCCEEEeccchhhhhccCCCCCCEEEEEECCcCcHHHHHHHHH
Confidence 456899999999998775 46899999999999998888887666678999999999999999999999999
Q ss_pred HHHcCCeEEEEEcCCCCccccccCeeEEcccCCCcccccchhHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHH
Q psy1915 153 CKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRRNEIIKGLKVIHE 232 (361)
Q Consensus 153 ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~~~~t~s~t~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~ 232 (361)
||++|+++|+|||+++|||++.||++|.+++++|..+++|++|++|+++++++++.++..++...++++++++.|..+|+
T Consensus 424 Ak~~Ga~tIaITn~~~S~La~~AD~~l~~~ag~E~~va~Tks~tsql~~l~llal~la~~~~~~~~~~~~l~~~l~~lp~ 503 (670)
T PTZ00394 424 CKEAGAMCVGITNVVGSSISRLTHYAIHLNAGVEVGVASTKAYTSQVVVLTLVALLLSSDSVRLQERRNEIIRGLAELPA 503 (670)
T ss_pred HHHCCCcEEEEECCCCCHHHHhcCeEEEecccccccccccHhHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998889999999999999999998877554433456788999999999
Q ss_pred HHHHHHcc-cHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEc
Q psy1915 233 QIREVLQM-DSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILT 311 (361)
Q Consensus 233 ~~~~~l~~-~~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~ 311 (361)
.+++++++ .++++++++.+.+.++++++|+|++|++|+|+||||+|++++||++|+++||+|||+++++++++||++.+
T Consensus 504 ~i~~~l~~~~~~~~~~a~~l~~~~~~~~lGrG~~y~~A~EgALKlkE~syi~ae~y~~~EfkHGP~alid~~~pVi~l~~ 583 (670)
T PTZ00394 504 AISECLKITHDPVKALAARLKESSSILVLGRGYDLATAMEAALKVKELSYVHTEGIHSGELKHGPLALIDETSPVLAMCT 583 (670)
T ss_pred HHHHHHhhchHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcCChhhccCCcHHHhcCCceEEEEEc
Confidence 99999985 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCCC
Q psy1915 312 RDPVYVKCMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVDC 360 (361)
Q Consensus 312 ~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~~ 360 (361)
.|++++++.+++++++++|+++++|+++++..+....+.++.+|.+++.
T Consensus 584 ~~~~~e~~~~~~~evk~~g~~vi~I~~~~~~~~~~~~~~~i~vp~~~~~ 632 (670)
T PTZ00394 584 HDKHFGLSKSAVQQVKARGGAVVVFATEVDAELKAAASEIVLVPKTVDC 632 (670)
T ss_pred CCchHHHHHHHHHHHHHcCCeEEEEECCCcchhcccCCcEEECCCCchh
Confidence 9998889999999999999999999987654555556788999987664
No 4
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=100.00 E-value=3.9e-45 Score=376.69 Aligned_cols=280 Identities=54% Similarity=0.892 Sum_probs=246.8
Q ss_pred eccCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEecccccccCCCCCCCCEEEEEcCCCCcHHHHHHHH
Q psy1915 72 TRRGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALR 151 (361)
Q Consensus 72 ~~~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~~~a~~ 151 (361)
.+..+|+++|+|+|+++|. .++++++++.++++.+..++++.+......++|++|+||+||+|++++++++
T Consensus 361 ~~~~~I~~~G~GsS~~aa~---------~a~~~l~kl~~i~v~~~~~sef~~~~~~~~~~~lvI~ISqSGeT~eti~Al~ 431 (680)
T PLN02981 361 RRSRRIVFIGCGTSYNAAL---------AARPILEELSGVPVTMELASDLLDRQGPIYREDTAVFVSQSGETADTLRALE 431 (680)
T ss_pred hcCCEEEEEEecHHHHHHH---------HHHHHHHHHhCCCEEEecchHHHhccccCCCCCeEEEEeCCcCCHHHHHHHH
Confidence 3356899999999999875 4679999999999999889998665455678999999999999999999999
Q ss_pred HHHHcCCeEEEEEcCCCCccccccCeeEEcccCCCcccccchhHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHH
Q psy1915 152 YCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRRNEIIKGLKVIH 231 (361)
Q Consensus 152 ~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~~~~t~s~t~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~l~ 231 (361)
.||++|+++|+||++++|||++.||+++.+++|+|.++++|++|++|+++++++++.++..+....+.++++++.|..+|
T Consensus 432 ~Ak~~Ga~~IaITn~~~S~La~~ad~~i~~~~g~E~~~a~Tksfts~~~~l~llal~l~~~~~~~~~~~~~~~~~l~~lp 511 (680)
T PLN02981 432 YAKENGALCVGITNTVGSAISRGTHCGVHINAGAEIGVASTKAYTSQIVAMTMLALALGEDSISSRSRREAIIDGLFDLP 511 (680)
T ss_pred HHHHCCCcEEEEECCCCChhHhccCeeEEecCcccccccccccHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998999999999999999998887644322233467889999999
Q ss_pred HHHHHHHcccHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEc
Q psy1915 232 EQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILT 311 (361)
Q Consensus 232 ~~~~~~l~~~~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~ 311 (361)
+.++++++..++++++++.+.+.++++++|+|++|++|+|++|||+|++++|+.+|+++||+|||+++++++++||++.+
T Consensus 512 ~~l~~vl~~~~~~~~~a~~l~~~~~~~~lG~G~~yg~A~EgALKlkE~s~i~a~gy~~~Ef~HGP~ali~~~t~vi~l~~ 591 (680)
T PLN02981 512 NKVREVLKLDQEMKELAELLIDEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDETLPIIVIAT 591 (680)
T ss_pred HHHHHHHhccHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHHHHHHhhhccEEhhhcccChHHhccCCceEEEEEc
Confidence 99999997557899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHHcCCcEEEEecCCCchh--hhcccceEEcCCCCCC
Q psy1915 312 RDPVYVKCMNALLQVIARDGRPIVICEKGDTET--QALATKTLEVPHTVDC 360 (361)
Q Consensus 312 ~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~--~~~~d~~i~~p~~~~~ 360 (361)
+|++++++.+.+++++++|+++++|++..+... ....|.++.+|...+.
T Consensus 592 ~~~~~~~~~~~~~el~~~g~~vi~I~~~~~~~~~~~~~~~~~i~~p~~~~~ 642 (680)
T PLN02981 592 RDACFSKQQSVIQQLRARKGRLIVICSKGDASSVCPSGGCRVIEVPQVEDC 642 (680)
T ss_pred CCchHHHHHHHHHHHHHcCCEEEEEEcCCcchhccccCCCeEEEEeccchH
Confidence 998788899999999999999999988754221 1234677888876653
No 5
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=100.00 E-value=5.1e-44 Score=366.95 Aligned_cols=281 Identities=38% Similarity=0.615 Sum_probs=248.7
Q ss_pred eeccCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEecccccccCCCCCCCCEEEEEcCCCCcHHHHHHH
Q psy1915 71 ATRRGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMAL 150 (361)
Q Consensus 71 ~~~~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~~~a~ 150 (361)
..+..+++++|+|+|+..+. .++++++++.++++.+..++++.+.....+++|++|+||+||+|+++++++
T Consensus 288 l~~~~~I~~~G~GsS~~aa~---------~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dlvI~iS~SG~T~e~v~a~ 358 (607)
T TIGR01135 288 LKNVDRIQIVACGTSYHAGL---------VAKYLIERLAGIPVEVEIASEFRYRKPVVDKDTLVIAISQSGETADTLAAL 358 (607)
T ss_pred hccCCEEEEEEeechHHHHH---------HHHHHHHHhcCCCEEEecHHHHhhcCCCCCCCCEEEEEeCCCCCHHHHHHH
Confidence 34457899999999987664 458888998999998888888765556678999999999999999999999
Q ss_pred HHHHHcCCeEEEEEcCCCCccccccCeeEEcccCCCcccccchhHHHHHHHHHHHHHHHhhhhcch-HHHHHHHHHHHHH
Q psy1915 151 RYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISL-QTRRNEIIKGLKV 229 (361)
Q Consensus 151 ~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~~~~t~s~t~~~~~l~~l~~~~~~~~~~~-~~~~~~~~~~l~~ 229 (361)
+.||++|+++|+||++++|||++.||++|.+++++|.++++|++|+++++++++|+..++..++.. .++++++.+.+..
T Consensus 359 ~~ak~~ga~~IaIT~~~~S~La~~ad~~l~~~~~~e~~~~~tks~~s~l~~l~lL~~~l~~~~g~~~~~~~~~~~~~l~~ 438 (607)
T TIGR01135 359 RLAKELGAKTLGICNVPGSTLVRESDHTLYTRAGPEIGVASTKAFTTQLTVLYLLALKLAKARGTLSAEEEAELVDGLRR 438 (607)
T ss_pred HHHHHcCCcEEEEECCCCChHHhhcCceEEecCCCccchhhhHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888888889999999999999998887665432 3557788899999
Q ss_pred HHHHHHHHHcccHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEE
Q psy1915 230 IHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMI 309 (361)
Q Consensus 230 l~~~~~~~l~~~~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i 309 (361)
+|+.++++++..++++++++.+.+.++++++|+|++|++|+|++|||+|++++|+++|+++||+|||++++++++++|++
T Consensus 439 l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~~g~A~E~aLKl~E~~~~~a~~~~~~Ef~HGP~~~i~~~~~vi~l 518 (607)
T TIGR01135 439 LPALVEQVLKLEESIAELAERYADKHNFLFLGRGLGYPIALEGALKLKEISYIHAEGYPAGELKHGPIALIDEGLPVVAI 518 (607)
T ss_pred HHHHHHHHHhCcHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHhccccchhhhccCcHhhhCCCCCEEEE
Confidence 99999999976678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCccHHHHHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCCC
Q psy1915 310 LTRDPVYVKCMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVDC 360 (361)
Q Consensus 310 ~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~~ 360 (361)
.++|++.+++.+.+++++++|+++++|+++++......+|..+.+|..++.
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~g~~v~~I~~~~~~~~~~~~~~~i~~p~~~~~ 569 (607)
T TIGR01135 519 APKDSLFEKTKSNVEEVKARGARVIVFADEDDEFLESVADDVIKLPEVEEL 569 (607)
T ss_pred EeCchHHHHHHHHHHHHHHcCCeEEEEECCCcccccccCCcEEECCCCCcc
Confidence 999987788999999999999999999887543333456788999987654
No 6
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=100.00 E-value=2.1e-43 Score=362.24 Aligned_cols=307 Identities=37% Similarity=0.586 Sum_probs=259.0
Q ss_pred HHHHHHHHHHHHHHHhhhhccC-ccce-----eeeccCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEe
Q psy1915 44 HLARHIAIMEGAFALCFKSKLF-PGEC-----VATRRGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVEL 117 (361)
Q Consensus 44 ~i~~~~~~l~~~~~~~~~~~~~-~~~~-----~~~~~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~ 117 (361)
.+.+.+.+..++|...+..... .+.+ .+....+|+++|+|+|...+. .++++++++.++++.+..
T Consensus 253 ~m~~eI~eqP~~l~~~~~~~~~~~~~~~~~~~~l~~a~~I~~~G~GsS~~aa~---------~a~~~~~~~~~~~~~~~~ 323 (604)
T PRK00331 253 FMLKEIYEQPEAIRDTLEGRLDELGEGELADEDLKKIDRIYIVACGTSYHAGL---------VAKYLIESLAGIPVEVEI 323 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccchhhhHHHHhcCCEEEEEEeecHHHHHH---------HHHHHHHHHcCCCEEEEe
Confidence 5555566666666655432211 0011 123457899999999987654 457888888899988877
Q ss_pred cccccccCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccCCCcccccchhHHH
Q psy1915 118 ASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTS 197 (361)
Q Consensus 118 ~~e~~~~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~~~~t~s~t~ 197 (361)
++++.+.....+++|++|+||+||+|++++++++.||++|+++|+||++++|||++.||++|.+++++|..+++|++|++
T Consensus 324 ~~~~~~~~~~~~~~dlvI~iS~SG~T~e~i~a~~~ak~~ga~~IaIT~~~~S~La~~aD~~l~~~~~~e~~~~~tks~~s 403 (604)
T PRK00331 324 ASEFRYRDPVLSPKTLVIAISQSGETADTLAALRLAKELGAKTLAICNVPGSTIARESDAVLYTHAGPEIGVASTKAFTA 403 (604)
T ss_pred hhhhhccCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhcCcEEEecCcCccchhhhHHHHH
Confidence 77776555667899999999999999999999999999999999999999999999999999998888888888999999
Q ss_pred HHHHHHHHHHHHhhhhcch-HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHH
Q psy1915 198 QFISLVMFALVMCEDRISL-QTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKI 276 (361)
Q Consensus 198 ~~~~l~~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl 276 (361)
+++++++|++.++..++.. .+.++++.+.|+.+|+.++++++..++++++++.+.+.++++++|+|++|++|+|++|||
T Consensus 404 ~l~~l~lL~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~lG~G~~~~~A~E~aLKl 483 (604)
T PRK00331 404 QLAVLYLLALALAKARGTLSAEEEADLVHELRELPALIEQVLDLKEQIEELAEDFADARNALFLGRGVDYPVALEGALKL 483 (604)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 9999999998887765432 356788899999999999999876678999999999999999999999999999999999
Q ss_pred HHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCC
Q psy1915 277 KELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPH 356 (361)
Q Consensus 277 ~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~ 356 (361)
+|++++|+++|+++||+|||++++++++++|++.++|+..+++.+.+++++++|+++++|++.++ .+....|..+.+|.
T Consensus 484 ~E~~~i~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~~I~~~~~-~~~~~~~~~~~~~~ 562 (604)
T PRK00331 484 KEISYIHAEGYAAGELKHGPIALIDEGMPVVAIAPNDELYEKTKSNIQEVKARGARVIVIADEGD-EVAEEADDVIEVPE 562 (604)
T ss_pred HHHhhhcccccchhhhccCcHhhhcCCceEEEEEcCchHHHHHHHHHHHHHhCCCEEEEEEcCCc-cccccCCceEECCC
Confidence 99999999999999999999999999999999999888777888899999999999999987654 33345678899998
Q ss_pred CCCC
Q psy1915 357 TVDC 360 (361)
Q Consensus 357 ~~~~ 360 (361)
.++.
T Consensus 563 ~~~~ 566 (604)
T PRK00331 563 VHEL 566 (604)
T ss_pred Cccc
Confidence 7654
No 7
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=100.00 E-value=7.5e-42 Score=326.98 Aligned_cols=248 Identities=20% Similarity=0.264 Sum_probs=210.9
Q ss_pred cCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEecccccccCC-CCCCCCEEEEEcCCCCcHHHHHHHHH
Q psy1915 74 RGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFLDRNT-PVFRDDVCFFISQSGETADSLMALRY 152 (361)
Q Consensus 74 ~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~t~e~~~a~~~ 152 (361)
..+|+++|+|+|...+. .++++++++.++++.+..++++.+... .++++|++|+||+||+|++++++++.
T Consensus 44 ~~~I~~~g~GsS~~aa~---------~~~~~~~k~~~i~v~~~~~~~~~~~~~~~~~~~~lvI~iS~SGeT~e~i~al~~ 114 (340)
T PRK11382 44 IDRIYFVACGSPLNAAQ---------TAKHLADRFSDLQVYAISGWEFCDNTPYRLDDRCAVIGVSDYGKTEEVIKALEL 114 (340)
T ss_pred CCEEEEEEechHHHHHH---------HHHHHHHHHcCCCeEEeccHHHHhcCCcCCCCCCEEEEEcCCCCCHHHHHHHHH
Confidence 46899999999998875 457889999999998888888865443 57899999999999999999999999
Q ss_pred HHHcCCeEEEEEcCCCCccccccCeeEEcccCCCcccccchhHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHH
Q psy1915 153 CKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRRNEIIKGLKVIHE 232 (361)
Q Consensus 153 ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~~~~t~s~t~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~ 232 (361)
||++|++||+||++++|||++.||++|.+.+|+ ++..++..+.++...+...... .+.++++.+.++.+|+
T Consensus 115 ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~ag~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~ 185 (340)
T PRK11382 115 GRACGALTAAFTKRADSPITSAAEFSIDYQADC--------IWEIHLLLCYSVVLEMITRLAP-NAEIGKIKNDLKQLPN 185 (340)
T ss_pred HHHcCCeEEEEECCCCChHHHhCCEEEEeCCCc--------hHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998764 2222333333333332221111 2356788899999999
Q ss_pred HHHHHHc-ccHHHHHHHHHHhcCCeEEEEeccCCHHHH-HHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEE
Q psy1915 233 QIREVLQ-MDSEVQQLAKEMYEQKSMLLMGRGYNYATC-MEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMIL 310 (361)
Q Consensus 233 ~~~~~l~-~~~~~~~~a~~l~~~~~i~~iG~G~~~~~A-~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~ 310 (361)
.++++++ |.+..+++++.+.+.+.++++|+|++|++| +|++|||+|++|+|+++|+++||+|||++++++++++|++.
T Consensus 186 ~i~~~~~~~~~~~~~~a~~~~~~~~~~~lG~G~~y~~A~~E~alKl~E~~~i~a~~~~~~Ef~HGP~~li~~~~~vi~l~ 265 (340)
T PRK11382 186 ALGHLVRTWEEKGRQLGELASQWPMIYTVAAGPLRPLGYKEGIVTLMEFTWTHGCVIESGEFRHGPLEIVEPGVPFLFLL 265 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCCCHHHHHHHHHHHHHHHhhhhcccccHHHhccChHHHhcCCceEEEEE
Confidence 9998886 677788899988889999999999999997 89999999999999999999999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHHHcCCcEEEEecC
Q psy1915 311 TRDPVYVKCMNALLQVIARDGRPIVICEK 339 (361)
Q Consensus 311 ~~g~~~~~~~~~~~~~~~~g~~~v~I~~~ 339 (361)
++|+++++..+++++++++|+++++|+..
T Consensus 266 ~~~~~~~~~~~~~~~l~~~~~~v~~I~~~ 294 (340)
T PRK11382 266 GNDESRHTTERAINFVKQRTDNVIVIDYA 294 (340)
T ss_pred cCcchHHHHHHHHHHHHHCCCeEEEEECC
Confidence 99988888899999999999999999754
No 8
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=100.00 E-value=6.3e-42 Score=352.44 Aligned_cols=275 Identities=36% Similarity=0.507 Sum_probs=243.3
Q ss_pred eccCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCC-ceEEEecccccccCCCCCCCCEEEEEcCCCCcHHHHHHH
Q psy1915 72 TRRGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTEL-PVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMAL 150 (361)
Q Consensus 72 ~~~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~-~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~~~a~ 150 (361)
.+..+|+++|+|+|..+|. .++++++++.++ ++.+..++++.... ...++|++|+||+||+|+++++++
T Consensus 320 ~~~~~I~i~g~GsS~~aa~---------~~~~~l~~~~~~~~v~~~~~s~~~~~~-~~~~~~lvI~ISqSGeT~d~i~al 389 (640)
T PTZ00295 320 LNIKNLILVGCGTSYYAAL---------FAASIMQKLKCFNTVQVIDASELTLYR-LPDEDAGVIFISQSGETLDVVRAL 389 (640)
T ss_pred hcCCEEEEEEeehHHHHHH---------HHHHHHHHhCCCCceEEechHHhhhhc-cCCCCCEEEEEeCCCCcHHHHHHH
Confidence 3456899999999998875 357888988887 46666777765433 456899999999999999999999
Q ss_pred HHHHHcCCeEEEEEcCCCCccccccCeeEEcccCCCcccccchhHHHHHHHHHHHHHHHhhhhcc--hHHHHHHHHHHHH
Q psy1915 151 RYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRIS--LQTRRNEIIKGLK 228 (361)
Q Consensus 151 ~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~~~~t~s~t~~~~~l~~l~~~~~~~~~~--~~~~~~~~~~~l~ 228 (361)
+.||++|++||+||++++|||++.||++|.+.+|+|..++.|++|++++++++++++.+++.++. ..++++++++.|.
T Consensus 390 ~~ak~~Ga~~IaITn~~~S~La~~ad~~l~~~ag~E~~v~~Tk~~ts~l~~l~lla~~~~~~~~~~~~~~~~~~~~~~l~ 469 (640)
T PTZ00295 390 NLADELNLPKISVVNTVGSLIARSTDCGVYLNAGREVAVASTKAFTSQVTVLSLIALWFAQNKEYSCSNYKCSSLINSLH 469 (640)
T ss_pred HHHHHCCCCEEEEECCCCChhHHhcCEEEEeCCcCcccccccccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999998899988899999999999999998887766541 2345778999999
Q ss_pred HHHHHHHHHHc-ccHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCcc--CCCc
Q psy1915 229 VIHEQIREVLQ-MDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALID--NSMP 305 (361)
Q Consensus 229 ~l~~~~~~~l~-~~~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~--~~~~ 305 (361)
.+|+.++++++ ..++++++++.+.++++++++|+|.+|++|+|+++||+|++++|+++|+++||+|||+.+++ ++++
T Consensus 470 ~lp~~~~~~l~~~~~~~~~~a~~l~~a~~i~~lGrG~~~~iA~E~ALKLkEi~~i~ae~~~~~E~~HGp~ali~~~~~~~ 549 (640)
T PTZ00295 470 RLPTYIGMTLKSCEEQCKRIAEKLKNAKSMFILGKGLGYPIALEGALKIKEITYIHAEGFSGGALKHGPFALIDKEKNTP 549 (640)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHHHhhhhhhhcChHHhhhhHHHHhcCCCCCe
Confidence 99999999997 56789999999999999999999999999999999999999999999999999999999998 8899
Q ss_pred EEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCC
Q psy1915 306 VIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHT 357 (361)
Q Consensus 306 vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~ 357 (361)
||+++++|++.+++.+.+++++++|+++++|++.++ ++...+|.++.+|..
T Consensus 550 VI~i~~~~~~~~~~~~~~~~lk~rga~vi~It~~~~-~l~~~ad~~i~ip~~ 600 (640)
T PTZ00295 550 VILIILDDEHKELMINAAEQVKARGAYIIVITDDED-LVKDFADEIILIPSN 600 (640)
T ss_pred EEEEEcCCccHHHHHHHHHHHHHcCCEEEEEecCCc-cccccCCeEEEeCCc
Confidence 999999988777899999999999999999998754 466778989998874
No 9
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.9e-40 Score=310.68 Aligned_cols=248 Identities=29% Similarity=0.418 Sum_probs=209.1
Q ss_pred cCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEecccccccC-CCCCCCCEEEEEcCCCCcHHHHHHHHH
Q psy1915 74 RGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFLDRN-TPVFRDDVCFFISQSGETADSLMALRY 152 (361)
Q Consensus 74 ~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~~~~-~~~~~~dlvI~iS~SG~t~e~~~a~~~ 152 (361)
..+|+++|||+|.+++. .+++++++..+.++....++++.... ....++.++|++|+||+|+|++.+++.
T Consensus 39 ~~~I~~~g~GsS~~~~~---------~~~~~~~~~~~~~~~~~~~se~~~~~~~~~~~~~lvi~~S~SG~TpE~vaa~~~ 109 (340)
T COG2222 39 IDRILFVGCGSSLHAAT---------PAKYLLERELGLLVAAIPASEFLTNGAKYLGEDSLVIAFSQSGNTPESVAAAEL 109 (340)
T ss_pred CcEEEEEecCchHHHHH---------HHHHHHHHhhCceeeeechhHHhccCccccCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 35899999999998875 56899998899998888899986544 456777899999999999999999999
Q ss_pred HHHcCCeEEEEEcCCCCccccccCeeEEcccCCCcccccchhHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHH
Q psy1915 153 CKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRRNEIIKGLKVIHE 232 (361)
Q Consensus 153 ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~~~~t~s~t~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~ 232 (361)
||+.|+.+|+||+.++|||++.||+.|.+..++|.++..|++|+++++....+...+.+ .......+..++.
T Consensus 110 a~~~ga~~i~lT~~~dSpLa~~ad~~i~~~~~~e~~~a~T~s~~~~~~a~l~~~a~~~~--------~~~~~~~l~~~~~ 181 (340)
T COG2222 110 AKEGGALTIALTNEEDSPLARAADYVIPYLAGEEASVAATKSFTASLLALLALLAEYDG--------DAQLLAALPDLPL 181 (340)
T ss_pred hccCCCeEEEEecCCCChhhhcCCeeeeccCCchHHHHHHHHHHHHHHHHHHHHhhhcc--------cchhhhhhhcchH
Confidence 99999999999999999999999999999999888788899998877654433221111 1122223444444
Q ss_pred HHHHHHcccHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcC
Q psy1915 233 QIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTR 312 (361)
Q Consensus 233 ~~~~~l~~~~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~ 312 (361)
...+.. ++..++++..+.+.+++|++|+|+.|++|+|.++|++|++++|++++++.||+|||+++++++++||++.++
T Consensus 182 ~~~~~~--~~~~~~~~~~~~~~~~i~~lGsG~~~g~A~e~aLkl~E~~~~~s~a~~s~E~~HGp~elv~~~~pvi~~~~~ 259 (340)
T COG2222 182 EAAKAL--EEDAQEFAEEYADEDRIYTLGSGPLYGAAYEAALKLKEMQWIHSEAISSGEFRHGPKELVEEGTPVLLFVSE 259 (340)
T ss_pred HHHHHh--hHHHHHHHHHhcCCCEEEEECCcccHHHHHHHHHHHHHHccccceeeeccccccCcHHHcCCCceEEEEecC
Confidence 443333 355677999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHcCCcEEEEecCC
Q psy1915 313 DPVYVKCMNALLQVIARDGRPIVICEKG 340 (361)
Q Consensus 313 g~~~~~~~~~~~~~~~~g~~~v~I~~~~ 340 (361)
|++++-..+++++++++|+++++|.+.+
T Consensus 260 d~tr~~~~r~~~~~~~~ga~v~vi~a~~ 287 (340)
T COG2222 260 DETRELDERALKFLKNYGAKVLVIDAKD 287 (340)
T ss_pred CcchhHHHHHHHHHHhcCCeEEEEcCcc
Confidence 9999888899999999999999887553
No 10
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.
Probab=100.00 E-value=1.3e-38 Score=307.63 Aligned_cols=260 Identities=17% Similarity=0.203 Sum_probs=200.8
Q ss_pred CCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEecccccccCC-CC--CCCCEEEEEcCCCCcHHHHHHHH
Q psy1915 75 GSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFLDRNT-PV--FRDDVCFFISQSGETADSLMALR 151 (361)
Q Consensus 75 g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~~~~~-~~--~~~dlvI~iS~SG~t~e~~~a~~ 151 (361)
.+++++|+|+|++.+. ++++++++..++++.+..+++|..... .. .+++++|++||||+|+|++++++
T Consensus 43 ~~i~~~g~GsS~~a~~---------~~~~~~~~~~~i~v~~~~~~e~~~~~~~~~~~~~~~lvi~iSqSGeT~etv~a~~ 113 (372)
T TIGR02815 43 LRIVLTGAGTSAFIGD---------ALAPWLASHTGLNVSAVPTTDLVSNPRQYLDPTRPTLLVSFARSGNSPESVAAVE 113 (372)
T ss_pred CEEEEEechHHHHHHH---------HHHHHHHHhcCCCEEEEeCcccccccccccCCCCCeEEEEEeCCcCcHHHHHHHH
Confidence 4789999999998875 578999999999999999999753322 22 35689999999999999999999
Q ss_pred HHHHc--CCeEEEEEcCCCCccccccC-----eeEEcccC-CCcccccchhHHHHHHHHHHHHHHHhhhhcchHHHHHHH
Q psy1915 152 YCKAR--GALIVGVTNTVGSSISRESH-----CGIHINAG-PEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRRNEI 223 (361)
Q Consensus 152 ~ak~~--g~~~i~IT~~~~S~la~~ad-----~~l~~~~~-~e~~~~~t~s~t~~~~~l~~l~~~~~~~~~~~~~~~~~~ 223 (361)
.||++ |+++|+||++++|+|++.|| +.+.+++| +|.++++|++|+++++++.++. +..... ++.
T Consensus 114 ~ak~~~~g~~~i~it~~~~s~la~~ad~~~~~~~i~~~ag~~e~gva~Tksft~~l~al~~l~---~~~~~~-----~~~ 185 (372)
T TIGR02815 114 LADQLLPECYHLVLTCNEEGALYRNAINRSNAFALLMPAESNDRSFAMTSSFSCMTLATLAVL---GPETIE-----SQT 185 (372)
T ss_pred HHHHhCCCCcEEEEEcCCCCHHHHhhcccCceeEEEccCCCccceeeeHHHHHHHHHHHHHHH---ccccCC-----HHH
Confidence 99998 89999999999999999999 78888887 8889999999999887766552 221111 111
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHH--hcCCeEEEEeccCCHHHHHHHHHHHHHhhCcc--eEEEecCCccccCccC
Q psy1915 224 IKGLKVIHEQIREVLQMDSEVQQLAKEM--YEQKSMLLMGRGYNYATCMEGALKIKELTYMH--SEGIMAGELKHGPLAL 299 (361)
Q Consensus 224 ~~~l~~l~~~~~~~l~~~~~~~~~a~~l--~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~--a~~~~~~E~~Hgp~~~ 299 (361)
++.+++....+++. .++.+.++.+ .+.++++++|+|++|++|+|++|||+|+++.+ +.++..+||+|||+++
T Consensus 186 ---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lGrG~~y~~A~E~ALKlkE~~~~~~~~~~~~~~Ef~HGP~al 261 (372)
T TIGR02815 186 ---EERFADAALCILES-GQWDFSEGVLGYAPWERIVYLGSGGLQGLARESALKVLELTAGKVMAFYDSSLGFRHGPKSL 261 (372)
T ss_pred ---HHHHHHHHHHHHhh-hHHHHHHHHHhhcCCCeEEEEeCCCChHHHHHHHHHHHHHHHHHHheeeccccccccChHHH
Confidence 23344444444432 2234445554 47899999999999999999999999999844 5566789999999999
Q ss_pred ccCCCcEEEEEcCCc-cHHHHHHHHHHHHHcC--CcEEEEecCCCchhhhcccceEEcCCC
Q psy1915 300 IDNSMPVIMILTRDP-VYVKCMNALLQVIARD--GRPIVICEKGDTETQALATKTLEVPHT 357 (361)
Q Consensus 300 i~~~~~vi~i~~~g~-~~~~~~~~~~~~~~~g--~~~v~I~~~~~~~~~~~~d~~i~~p~~ 357 (361)
+++++++|++.++|+ ++....+.+++++++| +++++|++..+. .. ..+..+.+|..
T Consensus 262 v~~~~~vi~l~~~d~~~~~~~~~~l~e~~~~g~~~~v~~I~~~~~~-~~-~~~~~i~i~~~ 320 (372)
T TIGR02815 262 VDDETLVVVYVSSDPYTRQYDLDLLAELRRDNQAGRVVAISAESSD-IV-AAGDHFILPPS 320 (372)
T ss_pred hcCCCeEEEEEcCchhhhhhhHHHHHHHHhcCCCceEEEEEcCCcc-cc-cCCCEEEeCCC
Confidence 999999999998887 3322357888998885 889999875321 11 22456777754
No 11
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=99.91 E-value=4.4e-24 Score=199.11 Aligned_cols=184 Identities=18% Similarity=0.179 Sum_probs=130.9
Q ss_pred HHHHHHHhhhccCCCCCCCCcc---------------cchh--------HHHHHHHHHHHHHHHhhhhccCccc--eeee
Q psy1915 18 ELLIKGLKRLEYRGYDSSGNNE---------------LEGD--------HLARHIAIMEGAFALCFKSKLFPGE--CVAT 72 (361)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~---------------~~~d--------~i~~~~~~l~~~~~~~~~~~~~~~~--~~~~ 72 (361)
-||+||||||||+||+++|... .+.+ .+......|+.+....... .-++ -.+.
T Consensus 51 aTv~Rf~~kLGf~Gf~efk~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~--~l~~av~~L~ 128 (281)
T COG1737 51 ATVVRFARKLGFEGFSEFKLALAQELAEGRAQLLREIAEDDGPESILEKLLAANIAALERTLNLLDEE--ALERAVELLA 128 (281)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhhccchhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHH
Confidence 3999999999999999998621 1111 1222222222222221100 0001 1234
Q ss_pred ccCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEecccccc-cCCCCCCCCEEEEEcCCCCcHHHHHHHH
Q psy1915 73 RRGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFLD-RNTPVFRDDVCFFISQSGETADSLMALR 151 (361)
Q Consensus 73 ~~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~~-~~~~~~~~dlvI~iS~SG~t~e~~~a~~ 151 (361)
.+.+++++|.|.|+.+|.++. +.|. .+|.++.+..+.+... ....++++|++|+||+||+|++++++++
T Consensus 129 ~A~rI~~~G~g~S~~vA~~~~---------~~l~-~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~ 198 (281)
T COG1737 129 KARRIYFFGLGSSGLVASDLA---------YKLM-RIGLNVVALSDTHGQLMQLALLTPGDVVIAISFSGYTREIVEAAE 198 (281)
T ss_pred cCCeEEEEEechhHHHHHHHH---------HHHH-HcCCceeEecchHHHHHHHHhCCCCCEEEEEeCCCCcHHHHHHHH
Confidence 457899999999999987553 3333 3788988887766542 4567899999999999999999999999
Q ss_pred HHHHcCCeEEEEEcCCCCccccccCeeEEcccCCCcccc-cchhHHHHHHHHHHHHHHHhhhh
Q psy1915 152 YCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVA-STKAYTSQFISLVMFALVMCEDR 213 (361)
Q Consensus 152 ~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~~~-~t~s~t~~~~~l~~l~~~~~~~~ 213 (361)
.||++|+++|+||++.+|||++.||++|.++..++.... ++.+..++++++++|...+.+..
T Consensus 199 ~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~~~~~~~~~~~~~s~~a~l~l~d~L~~~~~~~~ 261 (281)
T COG1737 199 LAKERGAKVIAITDSADSPLAKLADIVLLVPVAEESFFRSPISSRIAQLALIDALITAVAQRR 261 (281)
T ss_pred HHHHCCCcEEEEcCCCCCchhhhhceEEeccCccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998764443322 23467788888888877766543
No 12
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=99.89 E-value=4.3e-21 Score=183.74 Aligned_cols=280 Identities=17% Similarity=0.161 Sum_probs=189.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhccCccceeeeccCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEeccccc
Q psy1915 43 DHLARHIAIMEGAFALCFKSKLFPGECVATRRGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFL 122 (361)
Q Consensus 43 d~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~ 122 (361)
+.+.+..+|+++++...... ...+++ .+.++|+++|+|+|+..+.. .++++.+..+.++....+..
T Consensus 6 ~~~~~~~~q~~~a~~~~~~~--~~~~~~-~~~~~I~i~G~GgS~~~a~~---------~~~~l~~~~~~~~~~~~~~~-- 71 (337)
T PRK08674 6 EEYLNWPEQFEEALEIAISL--DLEEDL-EKIDNIVISGMGGSGIGGDL---------LRILLFDELKVPVFVNRDYT-- 71 (337)
T ss_pred HHHHhHHHHHHHHHHhhhcc--chhhhh-cCCCEEEEEECcHHHHHHHH---------HHHHHHhcCCCcEEEeCccc--
Confidence 46677777888888776431 111222 45678999999999876642 24444445778877654432
Q ss_pred ccCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCe----eEEcccCCCcccccchhHHHH
Q psy1915 123 DRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHC----GIHINAGPEIGVASTKAYTSQ 198 (361)
Q Consensus 123 ~~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~----~l~~~~~~e~~~~~t~s~t~~ 198 (361)
.....+++|++|++|+||+|+|++++++.|+++|+++|+||+ +++|+++||. .+.++.+. +...++...
T Consensus 72 -~~~~~~~~dlvI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~--~~~L~~~a~~~~~~~i~ip~~~----~~r~s~~~l 144 (337)
T PRK08674 72 -LPAFVDEKTLVIAVSYSGNTEETLSAVEQALKRGAKIIAITS--GGKLKEMAKEHGLPVIIVPGGY----QPRAALGYL 144 (337)
T ss_pred -hhhcCCCCcEEEEEcCCCCCHHHHHHHHHHHHCCCeEEEECC--CchHHHHHHhcCCeEEEeCCCC----cchhhHHHH
Confidence 234568999999999999999999999999999999999997 5789999887 67776421 122222222
Q ss_pred HHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHH
Q psy1915 199 FISLVMFALVMCEDRISLQTRRNEIIKGLKVIHEQIREVLQ-MDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIK 277 (361)
Q Consensus 199 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~-~~~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~ 277 (361)
+..++.+.-.++... ....+++++.+.++++++.+..... ..+.++++|.++.+...+++ |+|..++.|+.++..+.
T Consensus 145 l~~l~~~l~~~Gl~~-~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~A~~lA~~~~~~~pv~~-gs~~~~~~a~~~~~~~~ 222 (337)
T PRK08674 145 FTPLLKILEKLGLIP-DKSAEVLETKIVLSELAEGLKEKVPTLKNLAKRLAGKLYGRIPVIY-GSGLTLAVAYRWKTQIN 222 (337)
T ss_pred HHHHHHHHHHcCCCc-cchhhHHHHHHHHHHHHHhhCcCCCcccCHHHHHHHHHhCCCCEEE-eCcccHHHHHHHHHHHH
Confidence 222211111111111 1123567777777777776543332 35678899999988777766 79999999999999999
Q ss_pred HhhCcceEEEecCCccccCccCccCC-----CcEEEEEcCCccHHH---HHHHHHH-HHHcCCcEEEEecCCCchhhh
Q psy1915 278 ELTYMHSEGIMAGELKHGPLALIDNS-----MPVIMILTRDPVYVK---CMNALLQ-VIARDGRPIVICEKGDTETQA 346 (361)
Q Consensus 278 E~~~~~a~~~~~~E~~Hgp~~~i~~~-----~~vi~i~~~g~~~~~---~~~~~~~-~~~~g~~~v~I~~~~~~~~~~ 346 (361)
|.+++++.+...+|..|+....++.+ ...+++..+.+ .++ ..++.++ ++.+|.+++.|...+++.+.+
T Consensus 223 Ena~~~~~~~~~pe~~H~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~i~~~g~~~~~~ 299 (337)
T PRK08674 223 ENAKYPAFYNEIPELNHNEIVGYERPQSLLKYFFVVVLRDSE-HPRIKKRVEITIDILTEAVINVIEIYPEGNSPLAR 299 (337)
T ss_pred HhcCCccccccCCcccccceeeccCchhhccceEEEEEcCCc-cHHHHHHHHHHHHHHHhcCCCeEEEecCCCcHHHH
Confidence 99999999999999999988877643 23333333333 222 2344444 566899999999887665433
No 13
>PRK15482 transcriptional regulator MurR; Provisional
Probab=99.89 E-value=1.3e-22 Score=189.92 Aligned_cols=184 Identities=17% Similarity=0.142 Sum_probs=124.8
Q ss_pred HHHHHHHhhhccCCCCCCCCccc----------------------chhHHHHH--------HHHHHHHHHHhhhhc-cCc
Q psy1915 18 ELLIKGLKRLEYRGYDSSGNNEL----------------------EGDHLARH--------IAIMEGAFALCFKSK-LFP 66 (361)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~~----------------------~~d~i~~~--------~~~l~~~~~~~~~~~-~~~ 66 (361)
.||+||||||||+||.+++.... +.|.+... ...+++++....... ...
T Consensus 49 aTv~Rf~kkLGf~Gf~efk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~t~~~id~~~l~~~ 128 (285)
T PRK15482 49 SSIVKFAQKLGAQGFTELRMALIGEYSASREKTNATALHLHSSITSDDSLEVIARKLNREKELALEQTCALFDYARLQKI 128 (285)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhhhccccccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 49999999999999999985210 11211111 122333333321100 000
Q ss_pred cceeeeccCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEeccccc-ccCCCCCCCCEEEEEcCCCCcHH
Q psy1915 67 GECVATRRGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFL-DRNTPVFRDDVCFFISQSGETAD 145 (361)
Q Consensus 67 ~~~~~~~~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~-~~~~~~~~~dlvI~iS~SG~t~e 145 (361)
-+ .+..+++++++|+|.|+.+|.++. +.+. .+|.++....+.+.. .....++++|++|+||+||+|++
T Consensus 129 ~~-~i~~A~~I~i~G~G~S~~~A~~l~---------~~l~-~~g~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sg~t~~ 197 (285)
T PRK15482 129 IE-VISKAPFIQITGLGGSALVGRDLS---------FKLM-KIGYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKE 197 (285)
T ss_pred HH-HHHhCCeeEEEEeChhHHHHHHHH---------HHHH-hCCCeeEEeccHhHHHHHHhcCCCCCEEEEEeCCCCCHH
Confidence 01 123457899999999998875332 2222 367777766554432 22356789999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccCCCcc-cccchhHHHHHHHHHHHHHHHhhh
Q psy1915 146 SLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIG-VASTKAYTSQFISLVMFALVMCED 212 (361)
Q Consensus 146 ~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~-~~~t~s~t~~~~~l~~l~~~~~~~ 212 (361)
++++++.||++|+++|+||++++|||+++||++|.++.++... ..+..+.++++.++++|...+...
T Consensus 198 ~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~ss~~~~~~~id~L~~~~~~~ 265 (285)
T PRK15482 198 IVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVSGETEWRSSSMSTRTAQNSVTDLLFVGLVQL 265 (285)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcCCCccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987653311 223457777777777776555443
No 14
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=99.87 E-value=3.1e-22 Score=186.82 Aligned_cols=184 Identities=16% Similarity=0.135 Sum_probs=124.8
Q ss_pred HHHHHHHhhhccCCCCCCCCccc-------------------chh--------HHHHHHHHHHHHHHHhhhhc-cCccce
Q psy1915 18 ELLIKGLKRLEYRGYDSSGNNEL-------------------EGD--------HLARHIAIMEGAFALCFKSK-LFPGEC 69 (361)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~~-------------------~~d--------~i~~~~~~l~~~~~~~~~~~-~~~~~~ 69 (361)
-||+||||||||+||.+++.... ..| .+......+++++....... ...-+
T Consensus 45 aTv~Rf~kklG~~Gf~efk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~~~~~~l~~~~~- 123 (278)
T PRK11557 45 SSVVKFAQKLGYKGFPALKLALSEALASQPEPPSVPVHNQIRGDDPLRLVGEKLIKENTAAMRATLDVNSEEKLHECVT- 123 (278)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-
Confidence 49999999999999999986311 011 12233334444444331100 00001
Q ss_pred eeeccCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEeccccc-ccCCCCCCCCEEEEEcCCCCcHHHHH
Q psy1915 70 VATRRGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFL-DRNTPVFRDDVCFFISQSGETADSLM 148 (361)
Q Consensus 70 ~~~~~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~-~~~~~~~~~dlvI~iS~SG~t~e~~~ 148 (361)
.+..+++++++|.|.|+.+|.... +.+. ..|.++....+.+.. .....++++|++|+||+||+++++++
T Consensus 124 ~i~~a~~I~i~G~G~s~~~A~~~~---------~~l~-~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~~~~~~~ 193 (278)
T PRK11557 124 MLRSARRIILTGIGASGLVAQNFA---------WKLM-KIGINAVAERDMHALLATVQALSPDDLLLAISYSGERRELNL 193 (278)
T ss_pred HHhcCCeEEEEecChhHHHHHHHH---------HHHh-hCCCeEEEcCChHHHHHHHHhCCCCCEEEEEcCCCCCHHHHH
Confidence 234567999999999988875332 2222 367776654333321 22346789999999999999999999
Q ss_pred HHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccC-CCcccccchhHHHHHHHHHHHHHHHhhh
Q psy1915 149 ALRYCKARGALIVGVTNTVGSSISRESHCGIHINAG-PEIGVASTKAYTSQFISLVMFALVMCED 212 (361)
Q Consensus 149 a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~-~e~~~~~t~s~t~~~~~l~~l~~~~~~~ 212 (361)
+++.||++|+++|+||++++||++++||++|..... ++.....+.+++++++++++|...+...
T Consensus 194 ~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~s~~~~~~l~d~L~~~~~~~ 258 (278)
T PRK11557 194 AADEALRVGAKVLAITGFTPNALQQRASHCLYTIAEEQATRSAAISSTHAQGMLTDLLFMALIQQ 258 (278)
T ss_pred HHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEeCCCCcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999987542 2222234567888888888776655543
No 15
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=99.86 E-value=2.6e-21 Score=181.84 Aligned_cols=183 Identities=17% Similarity=0.126 Sum_probs=123.2
Q ss_pred HHHHHHHhhhccCCCCCCCCccc---------------chhHHHHH--------HHHHHHHHHHhhhhccCccce--eee
Q psy1915 18 ELLIKGLKRLEYRGYDSSGNNEL---------------EGDHLARH--------IAIMEGAFALCFKSKLFPGEC--VAT 72 (361)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~~---------------~~d~i~~~--------~~~l~~~~~~~~~~~~~~~~~--~~~ 72 (361)
-||+||||||||+||.+++.... +.+...+. .+.+++++..... ..-+++ .+.
T Consensus 61 aTi~Rf~kkLGf~gf~efk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~~~l~~--~~l~~~~~~i~ 138 (292)
T PRK11337 61 AMIVKVAKKLGFSGFRNLRSALEDYFSQSEQVLHSELSFDDAPQDVVNKVFNTSLQAIEETQSILDV--DEFHRAARFFY 138 (292)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHH
Confidence 48999999999999999986311 11111111 2223333322210 000010 123
Q ss_pred ccCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEeccccc-ccCCCCCCCCEEEEEcCCCCcHHHHHHHH
Q psy1915 73 RRGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFL-DRNTPVFRDDVCFFISQSGETADSLMALR 151 (361)
Q Consensus 73 ~~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~-~~~~~~~~~dlvI~iS~SG~t~e~~~a~~ 151 (361)
.+.+++++|+|.|+.+|.... +.+. .+|+++.+..+.+.. .....++++|++|+||.||+|++++++++
T Consensus 139 ~A~~I~i~G~G~S~~~A~~l~---------~~l~-~~g~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS~sG~t~~~~~~~~ 208 (292)
T PRK11337 139 QARQRDLYGAGGSAAIARDVQ---------HKFL-RIGVRCQAYDDAHIMLMSAALLQEGDVVLVVSHSGRTSDVIEAVE 208 (292)
T ss_pred cCCeEEEEEecHHHHHHHHHH---------HHHh-hCCCeEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHH
Confidence 457899999999988775332 2222 257777666554432 23346789999999999999999999999
Q ss_pred HHHHcCCeEEEEEcCCCCccccccCeeEEcccCCCc-ccccchhHHHHHHHHHHHHHHHhhh
Q psy1915 152 YCKARGALIVGVTNTVGSSISRESHCGIHINAGPEI-GVASTKAYTSQFISLVMFALVMCED 212 (361)
Q Consensus 152 ~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~-~~~~t~s~t~~~~~l~~l~~~~~~~ 212 (361)
.||++|+++|+||++++||++++||++|.++..... ....+.++++++.++++|...+...
T Consensus 209 ~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~s~~~~~~i~d~L~~~l~~~ 270 (292)
T PRK11337 209 LAKKNGAKIICITNSYHSPIAKLADYVICSTAQGSPLLGENAAARIAQLNILDAFFVSVAQL 270 (292)
T ss_pred HHHHCCCeEEEEeCCCCChhHHhCCEEEEcCCCCcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998754221 1223456777778888776666544
No 16
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=99.86 E-value=2.2e-21 Score=168.24 Aligned_cols=155 Identities=21% Similarity=0.214 Sum_probs=123.1
Q ss_pred hHHHHHHHHHH-HHHHHhhhhccCccceeeeccCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEecccc
Q psy1915 43 DHLARHIAIME-GAFALCFKSKLFPGECVATRRGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDF 121 (361)
Q Consensus 43 d~i~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~ 121 (361)
+.+.+..+++. +.|..++ +.+..+.|++++.|+|.|++++..++++|.+ +|.|+.+..|.|.
T Consensus 14 ~~l~~~~~~~~~~~~~~a~-------~~i~~~~gkv~V~G~GkSG~Igkk~Aa~L~s----------~G~~a~fv~p~ea 76 (202)
T COG0794 14 EALLELAERLDDEDFVRAV-------ELILECKGKVFVTGVGKSGLIGKKFAARLAS----------TGTPAFFVGPAEA 76 (202)
T ss_pred HHHHHHHHhcCHHHHHHHH-------HHHHhcCCcEEEEcCChhHHHHHHHHHHHHc----------cCCceEEecCchh
Confidence 34444445544 3444443 3344557999999999999999877766663 8999999999887
Q ss_pred cccC-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccCCCcc---cccchhHHH
Q psy1915 122 LDRN-TPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIG---VASTKAYTS 197 (361)
Q Consensus 122 ~~~~-~~~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~---~~~t~s~t~ 197 (361)
.+.. +.+.++|++|+||.||+|.+++.+++++|+.|+++|+||++++|+|++.||+++.++..+|.. .++|.+.+.
T Consensus 77 ~hgdlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~g~~liaiT~~~~SsLak~aDvvl~ip~~~e~~p~~l~pt~st~~ 156 (202)
T COG0794 77 LHGDLGMITPGDVVIAISGSGETKELLNLAPKAKRLGAKLIAITSNPDSSLAKAADVVLVIPVKTEACPLGLAPTTSTTL 156 (202)
T ss_pred ccCCccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhcCeEEEccCccccCcccCCcchhhHH
Confidence 6544 678999999999999999999999999999999999999999999999999999998876643 456667777
Q ss_pred HHHHHHHHHHHHhhhhc
Q psy1915 198 QFISLVMFALVMCEDRI 214 (361)
Q Consensus 198 ~~~~l~~l~~~~~~~~~ 214 (361)
++...+.++..+-+.++
T Consensus 157 ~l~~gdal~~~L~e~~~ 173 (202)
T COG0794 157 TLALGDALAGTLFEARG 173 (202)
T ss_pred HHhhccHHHHHHHHHhC
Confidence 87777777665555443
No 17
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=99.86 E-value=5.7e-21 Score=156.98 Aligned_cols=125 Identities=46% Similarity=0.635 Sum_probs=108.0
Q ss_pred CcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEecccccccCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy1915 76 SPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKA 155 (361)
Q Consensus 76 ~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ak~ 155 (361)
+++++|+|.|+.+|.. +++++.++.+.++.+..+.++......++++|++|++|+||+|++++++++.||+
T Consensus 1 ~I~i~G~G~S~~~a~~---------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~ 71 (126)
T cd05008 1 RILIVGCGTSYHAALV---------AKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKE 71 (126)
T ss_pred CEEEEEccHHHHHHHH---------HHHHHHHhcCCceEEEehhHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHH
Confidence 5789999999988753 3566776666888887766665555668999999999999999999999999999
Q ss_pred cCCeEEEEEcCCCCccccccCeeEEcccCCCcccccchhHHHHHHHHHHHHHHH
Q psy1915 156 RGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVM 209 (361)
Q Consensus 156 ~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~~~~t~s~t~~~~~l~~l~~~~ 209 (361)
+|+++|+||++++|||+++||++|.++.++|.....++++++++..++++++.+
T Consensus 72 ~g~~vi~iT~~~~s~la~~ad~~l~~~~~~e~~~~~~~~~~~~~~~l~l~~~~~ 125 (126)
T cd05008 72 KGAKTVAITNVVGSTLAREADYVLYLRAGPEISVAATKAFTSQLLALLLLALAL 125 (126)
T ss_pred cCCeEEEEECCCCChHHHhCCEEEEecCCCcceechhhhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998877777677889999999998887654
No 18
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=99.85 E-value=2.1e-21 Score=181.80 Aligned_cols=184 Identities=16% Similarity=0.165 Sum_probs=122.2
Q ss_pred HHHHHHHhhhccCCCCCCCCccc---------------chh--------HHHHHHHHHHHHHHHhhhh-ccCccceeeec
Q psy1915 18 ELLIKGLKRLEYRGYDSSGNNEL---------------EGD--------HLARHIAIMEGAFALCFKS-KLFPGECVATR 73 (361)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~~---------------~~d--------~i~~~~~~l~~~~~~~~~~-~~~~~~~~~~~ 73 (361)
-||+||||||||+||++++.... +.+ .+....+.++.++...... ..+.-+ .+..
T Consensus 49 aTv~Rf~kklG~~gf~e~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~id~~~i~~~~~-~i~~ 127 (284)
T PRK11302 49 PTVNRFCRSLDTKGFPDFKLHLAQSLANGTPYVNRNVEEDDSVEAYTGKIFESAMASLDHARQSLDPSAINRAVD-LLTQ 127 (284)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhhccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHHc
Confidence 49999999999999999986310 011 1222233333333322100 000001 1233
Q ss_pred cCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEeccccc-ccCCCCCCCCEEEEEcCCCCcHHHHHHHHH
Q psy1915 74 RGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFL-DRNTPVFRDDVCFFISQSGETADSLMALRY 152 (361)
Q Consensus 74 ~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~-~~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ 152 (361)
+++++++|+|.|+.+|... .+.+.+ .|+++....+..+. ......+++|++|++|+||+|++++++++.
T Consensus 128 a~~I~i~G~G~S~~~a~~~---------~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~~~~~~~ 197 (284)
T PRK11302 128 AKKISFFGLGASAAVAHDA---------QNKFFR-FNVPVVYFDDIVMQRMSCMNSSDGDVVVLISHTGRTKSLVELAQL 197 (284)
T ss_pred CCeEEEEEcchHHHHHHHH---------HHHHHh-cCCceEecCCHHHHHHHHHhCCCCCEEEEEeCCCCCHHHHHHHHH
Confidence 4789999999999887532 222333 67777655443221 122457899999999999999999999999
Q ss_pred HHHcCCeEEEEEcCCCCccccccCeeEEcccCCCcc-cccchhHHHHHHHHHHHHHHHhhhh
Q psy1915 153 CKARGALIVGVTNTVGSSISRESHCGIHINAGPEIG-VASTKAYTSQFISLVMFALVMCEDR 213 (361)
Q Consensus 153 ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~-~~~t~s~t~~~~~l~~l~~~~~~~~ 213 (361)
||++|+++|+||+ ++||++++||++|.++..++.. ..+..+.++++.++++|...+...+
T Consensus 198 ak~~g~~vI~IT~-~~s~l~~~ad~~l~~~~~~~~~~~~~~~s~~~~~~l~d~L~~~l~~~~ 258 (284)
T PRK11302 198 ARENGATVIAITS-AGSPLAREATLALTLDVPEDTDIYMPMVSRIAQLTVIDVLATGFTLRR 258 (284)
T ss_pred HHHcCCeEEEECC-CCChhHHhCCEEEecCCCccchhcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998 7999999999999886533321 2234567778878887776665543
No 19
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=99.82 E-value=1.6e-18 Score=163.04 Aligned_cols=241 Identities=16% Similarity=0.152 Sum_probs=160.3
Q ss_pred CCcEEEEeccccccccccchhhhhHHHHHHHHHhc-CCceEEEecccccccCCCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q psy1915 75 GSPLLVGIKTKTRLATDHIPILYGKATRQLLEELT-ELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYC 153 (361)
Q Consensus 75 g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~-g~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~~~a~~~a 153 (361)
++|+++|+|+|+.++.. .++++.... ++++....+.. .....+++|++|++|.||+|++++.+++.|
T Consensus 22 ~~I~i~G~G~S~~~a~~---------l~~~l~~~~~~~~v~~~~d~~---l~~~~~~~dlvI~iS~SG~t~e~~~a~~~A 89 (308)
T TIGR02128 22 DEIVICGMGGSGIAGRI---------ISILLLEKSFQGPVFVVKDYR---LPRFVDGKTLLIAVSYSGNTEETLSAVEEA 89 (308)
T ss_pred CEEEEEEecHHHHHHHH---------HHHHHHHhCCCccEEEEcCcc---ccccCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999987742 245555544 46766554322 234568999999999999999999999999
Q ss_pred HHcCCeEEEEEcCCCCcccccc----CeeEEcccCCCcccccchhHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHH
Q psy1915 154 KARGALIVGVTNTVGSSISRES----HCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRRNEIIKGLKV 229 (361)
Q Consensus 154 k~~g~~~i~IT~~~~S~la~~a----d~~l~~~~~~e~~~~~t~s~t~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~ 229 (361)
+++|+++|+||+ +++|++.| +..+.++.+. ++..++...++.+..+ ++...+. +.++..+.+..
T Consensus 90 ~~~g~~ii~iT~--~g~L~~~a~~~~~~~i~vP~~~----~~R~s~~~~~~~~l~~---l~~~~g~---d~~~~~~~l~~ 157 (308)
T TIGR02128 90 KKKGAKVIAITS--GGRLEEMAKERGLDVIKIPKGL----QPRAAFPYLLTPLILM---LIKPLGI---DIEEAELLEGG 157 (308)
T ss_pred HHcCCEEEEECC--CcHHHHHHHhcCCeEEEcCCCC----CCeeeHHHHHHHHHHH---HHHHcCC---ChHHHHHHhcC
Confidence 999999999997 56899998 6777776642 2222333222221111 1111111 11111111111
Q ss_pred HHHHHHHHHc-ccHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccC---CCc
Q psy1915 230 IHEQIREVLQ-MDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDN---SMP 305 (361)
Q Consensus 230 l~~~~~~~l~-~~~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~---~~~ 305 (361)
|+ .+ ..++++++|.++.+..++++ |+++..++|++++..|.|+++.|+.....+|..|+.+..++. ...
T Consensus 158 -~~-----~~~~~n~Ak~LA~~l~~~~pvi~-~~~~~~~~A~R~k~~l~enak~~a~~~~lpe~~hn~i~~~~~~~~~~~ 230 (308)
T TIGR02128 158 -LD-----TPKLKALAKRLAEEIYNRIPVIY-SSSPTRPIAERWKNEINENAKSPAYYNILPELNHNEIEGLEDPYGLYE 230 (308)
T ss_pred -Cc-----cccccCHHHHHHHHhhCCCCEEE-eCCccHHHHHHHHHHHHhhcCCccccccCCcccccceeeeccccccce
Confidence 11 11 34689999999999766665 776688999999999999999999999999999988888863 233
Q ss_pred EEEEE-cCCccH-HHHHHHHHHHHHcCCcEEEEecCCCchhhhcc
Q psy1915 306 VIMIL-TRDPVY-VKCMNALLQVIARDGRPIVICEKGDTETQALA 348 (361)
Q Consensus 306 vi~i~-~~g~~~-~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~ 348 (361)
++++. ..+..+ ....+..+++ .|..+..|...+.+++.+++
T Consensus 231 ~~~~~d~~d~~~~~~r~~~~~~~--~~~~~~~i~~~g~~~l~~l~ 273 (308)
T TIGR02128 231 IVFMSDESDHSRCPKRVDITEKI--LGVVFISIYSRGNSLLARIL 273 (308)
T ss_pred EEEeeccccchhHHHHHHHHHHH--hCCceEEEEecCCCHHHHHH
Confidence 33443 222111 1122344444 48889999999888765543
No 20
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=99.78 E-value=1e-18 Score=148.26 Aligned_cols=115 Identities=43% Similarity=0.743 Sum_probs=106.1
Q ss_pred HHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHHHH
Q psy1915 243 EVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNA 322 (361)
Q Consensus 243 ~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~~ 322 (361)
+++++++.+.++++++++|+|+++++|+++++||+|+.++++.+++.+||+|||...+++++++|+++++|++.+++.+.
T Consensus 2 ~~~~~a~~~~~~~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~~~~~~~~vi~is~~g~t~~~~~~~ 81 (153)
T cd05009 2 DIKELAEKLKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPEDRLEEKLESL 81 (153)
T ss_pred hHHHHHHHHhccCcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhhhccCCCcEEEEecCChhHHHHHHH
Confidence 35678888999999999999999999999999999999999999999999999999999999999999999887778899
Q ss_pred HHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 323 LLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 323 ~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
++.++++|+++++|++..++ .+.+|+.+.+|...+
T Consensus 82 ~~~~~~~~~~vi~it~~~~s--~~~~d~~i~~~~~~~ 116 (153)
T cd05009 82 IKEVKARGAKVIVITDDGDA--KDLADVVIRVPATVE 116 (153)
T ss_pred HHHHHHcCCEEEEEecCCcc--cccCCeEEECCCCch
Confidence 99999999999999998876 678899999997654
No 21
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=99.78 E-value=8.3e-19 Score=181.34 Aligned_cols=184 Identities=13% Similarity=0.106 Sum_probs=120.9
Q ss_pred HHHHHHHhhhccCCCCCCCCccc---------------ch----hH----HHHHHHHHHHHHHHhhhh-ccCccceeeec
Q psy1915 18 ELLIKGLKRLEYRGYDSSGNNEL---------------EG----DH----LARHIAIMEGAFALCFKS-KLFPGECVATR 73 (361)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~~---------------~~----d~----i~~~~~~l~~~~~~~~~~-~~~~~~~~~~~ 73 (361)
-||+||||||||+||+++|...- .. +. +.+..+.+.+++...... ....-+ .+..
T Consensus 389 aTV~Rf~kkLGf~Gf~efK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~~~id~~~l~~aa~-~L~~ 467 (638)
T PRK14101 389 PTVIRFCRSLGCQGLSDFKLKLATGLTGTIPMSHSQVHLGDTATDFGAKVLDNTVSAILQLREHLNFEHVEQAID-ILNN 467 (638)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHhhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHhc
Confidence 48999999999999999985210 01 11 112222233332221100 000001 1234
Q ss_pred cCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEeccccc-ccCCCCCCCCEEEEEcCCCCcHHHHHHHHH
Q psy1915 74 RGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFL-DRNTPVFRDDVCFFISQSGETADSLMALRY 152 (361)
Q Consensus 74 ~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~-~~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ 152 (361)
.++|+++|+|.|+.+|.+. ++.+.+ +|+++....+.+.. .....++++|++|+||+||+|++++++++.
T Consensus 468 a~rI~i~G~G~S~~~A~~~---------~~~l~~-lg~~~~~~~d~~~~~~~~~~l~~~DvvI~iS~sG~t~e~i~~~~~ 537 (638)
T PRK14101 468 ARRIEFYGLGNSNIVAQDA---------HYKFFR-FGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDV 537 (638)
T ss_pred CCEEEEEEccHHHHHHHHH---------HHHHhc-CCceEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHH
Confidence 5789999999999887533 233333 57776655544332 223567899999999999999999999999
Q ss_pred HHHcCCeEEEEEcCCCCccccccCeeEEcccCCC-cccccchhHHHHHHHHHHHHHHHhhhh
Q psy1915 153 CKARGALIVGVTNTVGSSISRESHCGIHINAGPE-IGVASTKAYTSQFISLVMFALVMCEDR 213 (361)
Q Consensus 153 ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e-~~~~~t~s~t~~~~~l~~l~~~~~~~~ 213 (361)
||++|+++|+||+. +|||+++||++|.++.... .+..++.+..+|++++++|...+...+
T Consensus 538 Ak~~Ga~vIaIT~~-~spLa~~aD~~L~~~~~~~~~s~~~~~s~~~~l~lid~L~~~l~~~~ 598 (638)
T PRK14101 538 AMQAGAKVIAITSS-NTPLAKRATVALETDHIEMRESQLSMISRILHLVMIDILAVGVAIRR 598 (638)
T ss_pred HHHCCCeEEEEcCC-CChhHhhCCEEEEcCCccchhccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999994 8999999999997754221 122334556667777777766665543
No 22
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=99.77 E-value=2.9e-18 Score=141.28 Aligned_cols=121 Identities=26% Similarity=0.286 Sum_probs=96.9
Q ss_pred CCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEecccccc-cCCCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q psy1915 75 GSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFLD-RNTPVFRDDVCFFISQSGETADSLMALRYC 153 (361)
Q Consensus 75 g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~~-~~~~~~~~dlvI~iS~SG~t~e~~~a~~~a 153 (361)
|+++++|+|.|..+|... ++.+. .+|.++....+.+... .....+++|++|++|+||+|++++++++.|
T Consensus 1 ~~I~i~G~G~S~~~a~~~---------~~~l~-~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a 70 (128)
T cd05014 1 GKVVVTGVGKSGHIARKI---------AATLS-STGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHL 70 (128)
T ss_pred CeEEEEeCcHhHHHHHHH---------HHHhh-cCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 579999999999887532 33333 3688888776655432 335678999999999999999999999999
Q ss_pred HHcCCeEEEEEcCCCCccccccCeeEEcccCCCc---ccccchhHHHHHHHHHHH
Q psy1915 154 KARGALIVGVTNTVGSSISRESHCGIHINAGPEI---GVASTKAYTSQFISLVMF 205 (361)
Q Consensus 154 k~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~---~~~~t~s~t~~~~~l~~l 205 (361)
|++|+++|+||++++|||++.||+.|.++.+++. ....+.+++++++++++|
T Consensus 71 ~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~s~~~~~~~~d~l 125 (128)
T cd05014 71 KRRGAPIIAITGNPNSTLAKLSDVVLDLPVEEEACPLGLAPTTSTTAMLALGDAL 125 (128)
T ss_pred HHCCCeEEEEeCCCCCchhhhCCEEEECCCCcccccCCCCchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876552 334567777777777665
No 23
>cd05010 SIS_AgaS_like AgaS-like protein. AgaS contains a SIS (Sugar ISomerase) domain which is found in many phosphosugar isomerases and phosphosugar binding proteins. AgaS is a putative isomerase in Escherichia coli. It is similar to the glucosamine-6-phosphate synthases (GlmS) which catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source.
Probab=99.75 E-value=3.6e-18 Score=144.54 Aligned_cols=84 Identities=25% Similarity=0.358 Sum_probs=75.6
Q ss_pred EEEEeccCCHHHHHHHHHHHHHhhC--cceEEEecCCccccCccCccCCCcEEEEEcCCccHHH-HHHHHHHHHHc--CC
Q psy1915 257 MLLMGRGYNYATCMEGALKIKELTY--MHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVK-CMNALLQVIAR--DG 331 (361)
Q Consensus 257 i~~iG~G~~~~~A~e~alkl~E~~~--~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~-~~~~~~~~~~~--g~ 331 (361)
++++|+|++|++|+|+||||+|+++ +|+++++++||+|||++++++++++|++.++|++.++ ..+.+++++++ |+
T Consensus 1 ~~~lGrG~~y~~A~E~ALKlkE~s~~~~~ae~~s~~Ef~HGP~alv~~~~~vi~l~~~d~~~~~~~~~~~~ei~~~~~g~ 80 (151)
T cd05010 1 VVYLGSGPLAGLAREAALKVLELTAGKVATVYDSPLGFRHGPKSLVDDDTLVVVFVSNDPYTRQYDLDLLKELRRDGIAA 80 (151)
T ss_pred CEEEecCCcHHHHHHHHHHHHHHhccchhhccccccccccCcHHHccCCceEEEEEcCCchHHHHHHHHHHHHHhccCCC
Confidence 4789999999999999999999998 8999999999999999999999999999998886533 56889999998 79
Q ss_pred cEEEEecCC
Q psy1915 332 RPIVICEKG 340 (361)
Q Consensus 332 ~~v~I~~~~ 340 (361)
++++|+++.
T Consensus 81 ~vi~i~~~~ 89 (151)
T cd05010 81 RVIAISPES 89 (151)
T ss_pred eEEEEEcCC
Confidence 999998753
No 24
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=99.75 E-value=7.1e-18 Score=149.43 Aligned_cols=154 Identities=25% Similarity=0.273 Sum_probs=120.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhccCccceeeeccCCcEEEEeccccccc----cccchhhhhH---------HHHHHHHHh-
Q psy1915 43 DHLARHIAIMEGAFALCFKSKLFPGECVATRRGSPLLVGIKTKTRLA----TDHIPILYGK---------ATRQLLEEL- 108 (361)
Q Consensus 43 d~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~i~~~G~G~S~~~a----~~~~~~~~~~---------~a~~~~~~~- 108 (361)
.++++.++++..+.+.+......+ ||..++|.|+|++++ .++.|+|... .+...+.+.
T Consensus 37 ~AV~~alp~Ia~Av~~~~~~l~~G--------GRLiY~GAGTSGRLGvlDAsEcPPTfgv~~e~ViglIAGG~~A~~~av 108 (298)
T COG2103 37 LAVEAALPQIAAAVDIIAAALKQG--------GRLIYIGAGTSGRLGVLDASECPPTFGVPPELVIGLIAGGEEAILKAV 108 (298)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcC--------CeEEEEcCCcccchhccchhhCCCCcCCChhHeeeeecCCHHHHHHhh
Confidence 488889999988888877655444 799999999999996 7788888632 111111111
Q ss_pred cCCceEEEecccc---cccCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccCC
Q psy1915 109 TELPVMVELASDF---LDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGP 185 (361)
Q Consensus 109 ~g~~~~~~~~~e~---~~~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~ 185 (361)
-|. .++.+. ......++++|++|+|+.||+|+.++.++++||++|+.||+|+||++||+.+.+|+.|....||
T Consensus 109 EGa----ED~~~~g~~dl~~~~lt~~DvvvgIaASGrTPYvigal~yAr~~Ga~Ti~iacNp~s~i~~~Ad~~I~~~vGP 184 (298)
T COG2103 109 EGA----EDDEELGEADLKNIGLTAKDVVVGIAASGRTPYVIGALEYARQRGATTIGIACNPGSAISRIADIAIEPVVGP 184 (298)
T ss_pred cCc----cccHHHHHHHHHHcCCCcCCEEEEEecCCCCchhhHHHHHHHhcCCeEEEeecCCCchhhhhcCcceeeccCc
Confidence 111 111111 1133578899999999999999999999999999999999999999999999999999999999
Q ss_pred Ccccccc--hhHHHHHHHHHHHHHH
Q psy1915 186 EIGVAST--KAYTSQFISLVMFALV 208 (361)
Q Consensus 186 e~~~~~t--~s~t~~~~~l~~l~~~ 208 (361)
|.-.++| |+-|+|.++|.+|...
T Consensus 185 EvltGSTRlKaGTAQKlvLNMlST~ 209 (298)
T COG2103 185 EVLTGSTRLKAGTAQKLVLNMLSTG 209 (298)
T ss_pred cccccccccccchHHHHHHHHHHHH
Confidence 9766666 7899999999999854
No 25
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=99.74 E-value=2e-17 Score=134.86 Aligned_cols=100 Identities=23% Similarity=0.371 Sum_probs=88.2
Q ss_pred CcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEeccccccc-CCCCCCCCEEEEEcCCCCcHHHHHHHHHHH
Q psy1915 76 SPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFLDR-NTPVFRDDVCFFISQSGETADSLMALRYCK 154 (361)
Q Consensus 76 ~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~~~-~~~~~~~dlvI~iS~SG~t~e~~~a~~~ak 154 (361)
+++++|+|+|+.+|.. +++++.++.++++.+..+.++... ....+++|++|++|+||+|++++++++.||
T Consensus 1 ~I~i~G~G~S~~~A~~---------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~I~iS~SG~t~~~~~~~~~a~ 71 (120)
T cd05710 1 NVFFVGCGGSLADMYP---------AKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNTKETVAAAKFAK 71 (120)
T ss_pred CEEEEEecHHHHHHhH---------HHHHHHHhcCCceEEEcHHHHhhcCcccCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 5789999999988753 467888777899988888776543 346889999999999999999999999999
Q ss_pred HcCCeEEEEEcCCCCccccccCeeEEcccC
Q psy1915 155 ARGALIVGVTNTVGSSISRESHCGIHINAG 184 (361)
Q Consensus 155 ~~g~~~i~IT~~~~S~la~~ad~~l~~~~~ 184 (361)
++|+++|+||++++|||+++||++|.++++
T Consensus 72 ~~g~~vi~iT~~~~s~la~~ad~~l~~~~~ 101 (120)
T cd05710 72 EKGATVIGLTDDEDSPLAKLADYVIVYGFE 101 (120)
T ss_pred HcCCeEEEEECCCCCcHHHhCCEEEEccCC
Confidence 999999999999999999999999999876
No 26
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=99.74 E-value=5.7e-17 Score=152.09 Aligned_cols=162 Identities=25% Similarity=0.284 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhccCccceeeeccCCcEEEEeccccccc-cc---cchhhhhHHHHHHHHH-h-cCCceE--
Q psy1915 43 DHLARHIAIMEGAFALCFKSKLFPGECVATRRGSPLLVGIKTKTRLA-TD---HIPILYGKATRQLLEE-L-TELPVM-- 114 (361)
Q Consensus 43 d~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~i~~~G~G~S~~~a-~~---~~~~~~~~~a~~~~~~-~-~g~~~~-- 114 (361)
+++.+.++++..+...+.....+ .|+++++|+|+|+++| .| +.++|... ...+.- . .|....
T Consensus 39 ~av~~~l~~I~~av~~~~~~l~~--------ggrI~~~GaGtSg~la~~da~e~~~tfg~~--~~~v~~iiagG~~a~~~ 108 (299)
T PRK05441 39 LAVEKALPQIAAAVDAAAAALRQ--------GGRLIYIGAGTSGRLGVLDASECPPTFGVP--PELVVGLIAGGEKALTK 108 (299)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHC--------CCEEEEEcCcHHHHHHHHHHHhCcCccCCC--chhceeeecCCcHHHHh
Confidence 36777777777777666543333 3789999999999887 33 33333210 000000 0 000000
Q ss_pred -E---Eecccc---cccCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccCCCc
Q psy1915 115 -V---ELASDF---LDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEI 187 (361)
Q Consensus 115 -~---~~~~e~---~~~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~ 187 (361)
+ ..+.+. ......++++|++|+||+||+|++++++++.||++|+++|+||++++|||++.+|+.|.++.|+|.
T Consensus 109 a~e~~ed~~~~~~~~l~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~aD~~I~~~~g~E~ 188 (299)
T PRK05441 109 AVEGAEDDAELGAADLKAINLTAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKEADIAIEVVVGPEV 188 (299)
T ss_pred cccccCChHHHHHHHHHhcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEcCCCCcc
Confidence 0 011111 112345789999999999999999999999999999999999999999999999999999888886
Q ss_pred ccccc--hhHHHHHHHHHHHHHHHhhhhc
Q psy1915 188 GVAST--KAYTSQFISLVMFALVMCEDRI 214 (361)
Q Consensus 188 ~~~~t--~s~t~~~~~l~~l~~~~~~~~~ 214 (361)
...+| ++.++|.+++++|...+....+
T Consensus 189 ~~~st~~~s~taqk~iLn~lst~~~~~~g 217 (299)
T PRK05441 189 LTGSTRMKAGTAQKLVLNMISTGVMIRLG 217 (299)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHcc
Confidence 54444 5788999999998877665443
No 27
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=99.74 E-value=6.9e-17 Score=148.48 Aligned_cols=161 Identities=25% Similarity=0.274 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhccCccceeeeccCCcEEEEeccccccc----cccchhhhhHHHHHHHHH-hc-CCce---
Q psy1915 43 DHLARHIAIMEGAFALCFKSKLFPGECVATRRGSPLLVGIKTKTRLA----TDHIPILYGKATRQLLEE-LT-ELPV--- 113 (361)
Q Consensus 43 d~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~i~~~G~G~S~~~a----~~~~~~~~~~~a~~~~~~-~~-g~~~--- 113 (361)
+++.+.++++.++...+.....+ .|+++++|+|+|+++| .++.++|..+. ..+.- +. |...
T Consensus 26 ~av~~~l~~I~~av~~~~~~l~~--------ggrl~~~GaGtSg~la~~da~e~~~tfg~~~--~~v~~~iagg~~a~~~ 95 (257)
T cd05007 26 AAVEAALPQIARAVDAAAERLRA--------GGRLIYVGAGTSGRLGVLDASELPPTFGTPP--ERVVGLIAGGEPALTR 95 (257)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHc--------CCEEEEEcCcHHHHHHHHHHHhccccccCCc--ccceEEEeCCHHHHHh
Confidence 46666677777777766544333 3799999999999987 34444443100 00000 00 0000
Q ss_pred ---EEEecccc---cccCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccCCCc
Q psy1915 114 ---MVELASDF---LDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEI 187 (361)
Q Consensus 114 ---~~~~~~e~---~~~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~ 187 (361)
....+.+. ......++++|++|+||+||+|++++++++.||++|+++|+||++++|||++++|+.|.++.++|.
T Consensus 96 a~~~~edd~~~~~~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~aD~~I~~~~g~E~ 175 (257)
T cd05007 96 AVEGAEDDEEAGAADLQAINLTERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAIALITGPEV 175 (257)
T ss_pred hccccCChHHHHHHHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEEcCCCCcc
Confidence 01111111 112355789999999999999999999999999999999999999999999999999999888885
Q ss_pred cccc--chhHHHHHHHHHHHHHHHhhhh
Q psy1915 188 GVAS--TKAYTSQFISLVMFALVMCEDR 213 (361)
Q Consensus 188 ~~~~--t~s~t~~~~~l~~l~~~~~~~~ 213 (361)
...+ .++.++|.+++++|...+....
T Consensus 176 ~~~st~~~s~~aqk~vLn~L~t~~~~~~ 203 (257)
T cd05007 176 VAGSTRLKAGTAQKLALNMLSTAVMIRL 203 (257)
T ss_pred ccCccccccHHHHHHHHHHHHHHHHHHc
Confidence 4333 3577899999999887666543
No 28
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=99.72 E-value=3.5e-17 Score=152.56 Aligned_cols=162 Identities=21% Similarity=0.193 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhccCccceeeeccCCcEEEEeccccccc-cc---cchhhhhHHHHHHHHHhcCCceEEEe-
Q psy1915 43 DHLARHIAIMEGAFALCFKSKLFPGECVATRRGSPLLVGIKTKTRLA-TD---HIPILYGKATRQLLEELTELPVMVEL- 117 (361)
Q Consensus 43 d~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~i~~~G~G~S~~~a-~~---~~~~~~~~~a~~~~~~~~g~~~~~~~- 117 (361)
+++.+.++++.++...+.....+ .|+++++|+|+|++++ .| +.++|..++ ..+-.-+.|-+.....
T Consensus 34 ~av~~~l~~I~~av~~~~~~l~~--------gGrl~~~G~G~Sg~l~~~DA~e~~~t~g~~~-~~~~~~iaGg~~a~~~~ 104 (291)
T TIGR00274 34 LAIESVLPDIAAAVEQIVQAFQQ--------GGRLIYIGAGTSGRLGVLDASECPPTFGVSP-ELVKGIIAGGECAILHA 104 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--------CCEEEEECCcHHHHHHHHHHHHhhhhcCCCH-HHhhHHhcCChHHHhcc
Confidence 58888888888887777654333 3799999999999874 23 444443210 0000011222111110
Q ss_pred ------cccc---cccCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccCCCcc
Q psy1915 118 ------ASDF---LDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIG 188 (361)
Q Consensus 118 ------~~e~---~~~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~ 188 (361)
..+. ......++++|++|+||+||+|++++++++.||++|+++|+||++++|++++++|+.|.++.++|..
T Consensus 105 ~e~~Ed~~~~~~~dl~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~~~~g~E~~ 184 (291)
T TIGR00274 105 VEGAEDSTEAGANDLQNIHLTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIETIVGPEIL 184 (291)
T ss_pred chhhhcchHHHHHHHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEecCCCCccc
Confidence 1111 1123468899999999999999999999999999999999999999999999999999988788865
Q ss_pred ccc--chhHHHHHHHHHHHHHHHhhhh
Q psy1915 189 VAS--TKAYTSQFISLVMFALVMCEDR 213 (361)
Q Consensus 189 ~~~--t~s~t~~~~~l~~l~~~~~~~~ 213 (361)
... .+++++|++++++|...+....
T Consensus 185 ~~st~~~s~~aqk~iLd~L~t~~~~~~ 211 (291)
T TIGR00274 185 TGSSRLKAGTAQKMVLNMLSTASMIKL 211 (291)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 433 3789999999999987665443
No 29
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=99.71 E-value=3.3e-16 Score=136.68 Aligned_cols=125 Identities=21% Similarity=0.159 Sum_probs=94.9
Q ss_pred ccCCcEEEEeccccccccccchhhhhHHHHHHHHHh--cCCceEEEecccccccCCCCCCCCEEEEEcCCCCcHHHHHHH
Q psy1915 73 RRGSPLLVGIKTKTRLATDHIPILYGKATRQLLEEL--TELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMAL 150 (361)
Q Consensus 73 ~~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~--~g~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~~~a~ 150 (361)
++++|+++|+|.|..+|. ++..++ .|.++....+. ....++++|++|+||+||+|+++++++
T Consensus 32 ~a~~I~i~G~G~S~~~A~------------~~~~~l~~~g~~~~~~~~~----~~~~~~~~D~vI~iS~sG~t~~~i~~~ 95 (179)
T cd05005 32 NAKRIFVYGAGRSGLVAK------------AFAMRLMHLGLNVYVVGET----TTPAIGPGDLLIAISGSGETSSVVNAA 95 (179)
T ss_pred hCCeEEEEecChhHHHHH------------HHHHHHHhCCCeEEEeCCC----CCCCCCCCCEEEEEcCCCCcHHHHHHH
Confidence 347899999999987664 333333 57777665432 235678999999999999999999999
Q ss_pred HHHHHcCCeEEEEEcCCCCccccccCeeEEcccCCCccc--------c-cchhHHHHHHHHHHHHHHHhhhh
Q psy1915 151 RYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGV--------A-STKAYTSQFISLVMFALVMCEDR 213 (361)
Q Consensus 151 ~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~~--------~-~t~s~t~~~~~l~~l~~~~~~~~ 213 (361)
+.||++|+++|+||++++||++++||+.|.++.+++... + .+..+++++.++++|...+...+
T Consensus 96 ~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ld~l~~~~~~~~ 167 (179)
T cd05005 96 EKAKKAGAKVVLITSNPDSPLAKLADVVVVIPAATKDDHGGEHKSIQPLGTLFEQSALVFLDAVIAKLMEEL 167 (179)
T ss_pred HHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCcccccCCCCccccccCccHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999887543211 1 11223567788887776665543
No 30
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=99.71 E-value=3.8e-17 Score=134.79 Aligned_cols=124 Identities=26% Similarity=0.310 Sum_probs=102.4
Q ss_pred cCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEeccccccc-CCCCCCCCEEEEEcCCCCcHHHHHHHHH
Q psy1915 74 RGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFLDR-NTPVFRDDVCFFISQSGETADSLMALRY 152 (361)
Q Consensus 74 ~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~~~-~~~~~~~dlvI~iS~SG~t~e~~~a~~~ 152 (361)
.++++++|.|.|+.+|.. +.+.+.+..+.......+.++... ...++++|++|++|+||+|+++++.++.
T Consensus 5 ~~~i~i~G~G~s~~~A~~---------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~~~~~~~~~ 75 (131)
T PF01380_consen 5 AKRIYIYGSGSSYGVAQY---------AALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETRELIELLRF 75 (131)
T ss_dssp SSEEEEEESTHHHHHHHH---------HHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTHHHHHHHHH
T ss_pred CCEEEEEEcchHHHHHHH---------HHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccchhhhhhhHH
Confidence 468999999999998853 245666666666666666665443 4568899999999999999999999999
Q ss_pred HHHcCCeEEEEEcCCCCccccccCeeEEcccCCCcccccchhHHHHHHHHHHHH
Q psy1915 153 CKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFA 206 (361)
Q Consensus 153 ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~~~~t~s~t~~~~~l~~l~ 206 (361)
||++|+++|+||++++||+++.+|+.|.++.+++...+.+.++++++.+++++.
T Consensus 76 ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~~~~~~~~~~~~s~~~~~~~~~~l~ 129 (131)
T PF01380_consen 76 AKERGAPVILITSNSESPLARLADIVLYIPTGEESQSASTSSFSAQLSLLDALF 129 (131)
T ss_dssp HHHTTSEEEEEESSTTSHHHHHSSEEEEEESSCGSSSSHSHHHHHHHHHHHHHH
T ss_pred HHhcCCeEEEEeCCCCCchhhhCCEEEEecCCCccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998877764556788888888777653
No 31
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.71 E-value=6.6e-17 Score=154.31 Aligned_cols=130 Identities=19% Similarity=0.244 Sum_probs=104.1
Q ss_pred CCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEecccccc-cCCCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q psy1915 75 GSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFLD-RNTPVFRDDVCFFISQSGETADSLMALRYC 153 (361)
Q Consensus 75 g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~~-~~~~~~~~dlvI~iS~SG~t~e~~~a~~~a 153 (361)
++++++|+|.|+.+|.+.. +.|. .+|.++....+.++.. ....++++|++|+||+||+|++++++++.|
T Consensus 48 ~~I~i~G~G~S~~~a~~~~---------~~l~-~~g~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~~~~~~~~~a 117 (326)
T PRK10892 48 GKVVVMGMGKSGHIGRKMA---------ATFA-STGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEILALIPVL 117 (326)
T ss_pred CeEEEEeCcHhHHHHHHHH---------HHHh-cCCceeEEeChHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 6899999999998875432 3333 3788887765554432 335688999999999999999999999999
Q ss_pred HHcCCeEEEEEcCCCCccccccCeeEEcccCCC---cccccchhHHHHHHHHHHHHHHHhhhhc
Q psy1915 154 KARGALIVGVTNTVGSSISRESHCGIHINAGPE---IGVASTKAYTSQFISLVMFALVMCEDRI 214 (361)
Q Consensus 154 k~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e---~~~~~t~s~t~~~~~l~~l~~~~~~~~~ 214 (361)
|++|+++|+||++++|||+++||+.|.+++++| ....++.+++++++..+.|...+...++
T Consensus 118 k~~g~~vi~iT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~s~ia~~~~~dsL~~~~l~~~g 181 (326)
T PRK10892 118 KRLHVPLICITGRPESSMARAADIHLCVKVPKEACPLGLAPTSSTTATLVMGDALAVALLKARG 181 (326)
T ss_pred HHCCCcEEEEECCCCCcccccCCEEEEeCCCcccCCCCCCchHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999887665 2345678888888888877766555444
No 32
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=99.70 E-value=2.9e-16 Score=137.02 Aligned_cols=123 Identities=17% Similarity=0.195 Sum_probs=91.4
Q ss_pred cCCcEEEEeccccccccccchhhhhHHHHHHHHHh--cCCceEEEecccccccCCCCCCCCEEEEEcCCCCcHHHHHHHH
Q psy1915 74 RGSPLLVGIKTKTRLATDHIPILYGKATRQLLEEL--TELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALR 151 (361)
Q Consensus 74 ~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~--~g~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~~~a~~ 151 (361)
.++++++|+|.|+.+|.+ +..++ .|.++....+. ....++++|++|++|+||+|++++++++
T Consensus 30 a~~I~i~G~G~S~~~A~~------------~~~~l~~~g~~~~~~~~~----~~~~~~~~Dv~I~iS~sG~t~~~i~~~~ 93 (179)
T TIGR03127 30 AKRIFVAGAGRSGLVGKA------------FAMRLMHLGFNVYVVGET----TTPSIKKGDLLIAISGSGETESLVTVAK 93 (179)
T ss_pred CCEEEEEecCHHHHHHHH------------HHHHHHhCCCeEEEeCCc----ccCCCCCCCEEEEEeCCCCcHHHHHHHH
Confidence 468999999999877643 33333 56666554332 1356889999999999999999999999
Q ss_pred HHHHcCCeEEEEEcCCCCccccccCeeEEcccCCCcc-------cccchh--HHHHHHHHHHHHHHHhhh
Q psy1915 152 YCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIG-------VASTKA--YTSQFISLVMFALVMCED 212 (361)
Q Consensus 152 ~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~-------~~~t~s--~t~~~~~l~~l~~~~~~~ 212 (361)
.||++|+++|+||++++||++++||++|.++.+++.. ..+..+ .++++++++.|...+...
T Consensus 94 ~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ild~l~~~~~~~ 163 (179)
T TIGR03127 94 KAKEIGATVAAITTNPESTLGKLADVVVEIPAATKKDSEGNYKSIQPLGSLFEQSLLLFLDAVILKLMKK 163 (179)
T ss_pred HHHHCCCeEEEEECCCCCchHHhCCEEEEeCCccccCCCCCccccCcCchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987643321 112212 235667777766555443
No 33
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.68 E-value=2.6e-16 Score=146.07 Aligned_cols=130 Identities=22% Similarity=0.235 Sum_probs=102.1
Q ss_pred CCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEecccccc-cCCCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q psy1915 75 GSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFLD-RNTPVFRDDVCFFISQSGETADSLMALRYC 153 (361)
Q Consensus 75 g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~~-~~~~~~~~dlvI~iS~SG~t~e~~~a~~~a 153 (361)
|+|+++|+|.|+.+|.++. +.+. ..|.++....+.+... .....+++|++|++|+||+|++++++++.|
T Consensus 1 ~rI~i~G~G~S~~~a~~~~---------~~l~-~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~a 70 (268)
T TIGR00393 1 GKLVIVGIGKSGLIGKKIV---------ATFA-STGTPSFFLHPTEAMHGDLGMVEPNDVVLMISYSGESLELLNLIPHL 70 (268)
T ss_pred CcEEEEecChHHHHHHHHH---------HHHH-hcCCceEEeCHhHHhhcccCCCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 6899999999988875432 2222 2688887776666433 335688999999999999999999999999
Q ss_pred HHcCCeEEEEEcCCCCccccccCeeEEcccCCCc---ccccchhHHHHHHHHHHHHHHHhhhhc
Q psy1915 154 KARGALIVGVTNTVGSSISRESHCGIHINAGPEI---GVASTKAYTSQFISLVMFALVMCEDRI 214 (361)
Q Consensus 154 k~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~---~~~~t~s~t~~~~~l~~l~~~~~~~~~ 214 (361)
|++|+++|+||++++|||+++||+.|.++.++|. ....+.++.++++++++|...+...++
T Consensus 71 ~~~g~~ii~iT~~~~s~l~~~~d~~l~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~ 134 (268)
T TIGR00393 71 KRLSHKIIAFTGSPNSSLARAADYVLDIKVEKEACPINLAPTTSTTLTLALGDALAVALMRARN 134 (268)
T ss_pred HHcCCcEEEEECCCCCcccccCCEEEEcCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999998765441 234566778888887777766655443
No 34
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.68 E-value=1.9e-16 Score=150.90 Aligned_cols=130 Identities=17% Similarity=0.217 Sum_probs=100.9
Q ss_pred cCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEeccccc-ccCCCCCCCCEEEEEcCCCCcHHHHHHHHH
Q psy1915 74 RGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFL-DRNTPVFRDDVCFFISQSGETADSLMALRY 152 (361)
Q Consensus 74 ~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~-~~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ 152 (361)
+++|+++|.|.|+.+|.+.. +.|. .+|.++....+.+.. ......+++|++|+||+||+|++++++++.
T Consensus 42 ~~~I~i~G~G~S~~~A~~~~---------~~l~-~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~ 111 (321)
T PRK11543 42 EGKVVVSGIGKSGHIGKKIA---------ATLA-STGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIPR 111 (321)
T ss_pred CCcEEEEecChhHHHHHHHH---------HHHH-cCCCceeecChHHHhhCCcCccCCCCEEEEEeCCCCcHHHHHHHHH
Confidence 35899999999998886443 2333 378888877665543 344678999999999999999999999999
Q ss_pred HHHcCCeEEEEEcCCCCccccccCeeEEcccCCCc---ccccchhHHHHHHHHHHHHHHHhhhh
Q psy1915 153 CKARGALIVGVTNTVGSSISRESHCGIHINAGPEI---GVASTKAYTSQFISLVMFALVMCEDR 213 (361)
Q Consensus 153 ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~---~~~~t~s~t~~~~~l~~l~~~~~~~~ 213 (361)
||++|+++|+||++++|||+++||++|.++...|. ....+.+.+++++..+.+...+...+
T Consensus 112 ak~~g~~vI~iT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~ss~~~~~~~~dsL~~~~l~~~ 175 (321)
T PRK11543 112 LEDKSIALLAMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSSTVNTLMMGDALAMAVMQAR 175 (321)
T ss_pred HHHcCCeEEEEECCCCChhHHhCCEEEEcCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999988764331 23345566777777776655554443
No 35
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=99.66 E-value=7.9e-16 Score=143.98 Aligned_cols=162 Identities=22% Similarity=0.203 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhccCccceeeeccCCcEEEEeccccccc----cccchhhhhHHHHHHHHH-hcCCceEE--
Q psy1915 43 DHLARHIAIMEGAFALCFKSKLFPGECVATRRGSPLLVGIKTKTRLA----TDHIPILYGKATRQLLEE-LTELPVMV-- 115 (361)
Q Consensus 43 d~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~i~~~G~G~S~~~a----~~~~~~~~~~~a~~~~~~-~~g~~~~~-- 115 (361)
+++.+.+++|.++...+.....+ .|+++++|.|+|+++| .++.++|..+. ..+.-- ..|.....
T Consensus 35 ~av~~~~~~I~~a~~~~~~~l~~--------ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~~-~~~~~~iagg~~a~~~a 105 (296)
T PRK12570 35 LAVEKVLPQIAQAVDKIVAAFKK--------GGRLIYMGAGTSGRLGVLDASECPPTFSVSP-EMVIGLIAGGPEAMFTA 105 (296)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHc--------CCeEEEECCchhHHHHHHHHHhCcchhcCCc-ccceeeeecCchHhhhc
Confidence 35666667776666665543333 3789999999999874 23333332100 000000 00111000
Q ss_pred -E---ecccc-c--ccCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccCCCcc
Q psy1915 116 -E---LASDF-L--DRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIG 188 (361)
Q Consensus 116 -~---~~~e~-~--~~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~ 188 (361)
. .+.+. . .....++++|++|+||+||+|++++++++.||++|+++|+||++++|||++++|+.|.+..++|..
T Consensus 106 ~~~~ed~~~~~~~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~La~~aD~~I~~~~g~E~~ 185 (296)
T PRK12570 106 VEGAEDDPELGAQDLKAIGLTADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKIADIAISPVVGPEVL 185 (296)
T ss_pred ccccCCcHHHHHHHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEeeCcCCccc
Confidence 0 11111 0 122456899999999999999999999999999999999999999999999999999887788865
Q ss_pred cccc--hhHHHHHHHHHHHHHHHhhhh
Q psy1915 189 VAST--KAYTSQFISLVMFALVMCEDR 213 (361)
Q Consensus 189 ~~~t--~s~t~~~~~l~~l~~~~~~~~ 213 (361)
..++ ++.++|++++++|...+....
T Consensus 186 ~~st~~~s~taqk~vLd~L~t~~~~r~ 212 (296)
T PRK12570 186 TGSTRLKSGTAQKMVLNMLSTASMIRL 212 (296)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444 688999999999887665443
No 36
>PRK13938 phosphoheptose isomerase; Provisional
Probab=99.61 E-value=5.6e-15 Score=130.03 Aligned_cols=107 Identities=18% Similarity=0.163 Sum_probs=79.2
Q ss_pred cCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEeccccc----------------ccCCCCCCCCEEEEE
Q psy1915 74 RGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFL----------------DRNTPVFRDDVCFFI 137 (361)
Q Consensus 74 ~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~----------------~~~~~~~~~dlvI~i 137 (361)
.++++++|.|+|+.+|.+....|.. .+- ..+-+++..+....... ......+++|++|++
T Consensus 45 g~rI~i~G~G~S~~~A~~fa~~L~~---~~~-~~r~~lg~~~l~~~~~~~~a~~nd~~~~~~~~~~~~~~~~~~DllI~i 120 (196)
T PRK13938 45 GARVFMCGNGGSAADAQHFAAELTG---HLI-FDRPPLGAEALHANSSHLTAVANDYDYDTVFARALEGSARPGDTLFAI 120 (196)
T ss_pred CCEEEEEeCcHHHHHHHHHHHHcCC---Ccc-CCcCccceEEEeCChHHHHHhhccccHHHHHHHHHHhcCCCCCEEEEE
Confidence 3799999999999988654432210 000 00113444443322211 113578999999999
Q ss_pred cCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccC
Q psy1915 138 SQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAG 184 (361)
Q Consensus 138 S~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~ 184 (361)
|+||+|++++++++.||++|+++|+||++++|||+++||+.|.++..
T Consensus 121 S~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v~~~ 167 (196)
T PRK13938 121 STSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINVPSR 167 (196)
T ss_pred cCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEeCCC
Confidence 99999999999999999999999999999999999999999998763
No 37
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=99.61 E-value=1.6e-15 Score=133.64 Aligned_cols=106 Identities=20% Similarity=0.189 Sum_probs=80.5
Q ss_pred cCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEeccccc---------------ccCCCCCCCCEEEEEc
Q psy1915 74 RGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFL---------------DRNTPVFRDDVCFFIS 138 (361)
Q Consensus 74 ~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~---------------~~~~~~~~~dlvI~iS 138 (361)
.++++++|+|+|+.+|++.+..+.. ++.+. ..|+++.+..+.... ......+++|++|+||
T Consensus 44 ~~rI~i~G~G~S~~~A~~~a~~l~~---~~~~~-r~g~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~~~Dv~I~iS 119 (192)
T PRK00414 44 GGKVLSCGNGGSHCDAMHFAEELTG---RYREN-RPGYPAIAISDVSHLSCVSNDFGYDYVFSRYVEAVGREGDVLLGIS 119 (192)
T ss_pred CCEEEEEeCcHHHHHHHHHHHHhcc---cccCC-CCCceEEecCcHHHHhhhhccCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence 3789999999999987654322210 01111 357776654433110 1123468999999999
Q ss_pred CCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEccc
Q psy1915 139 QSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINA 183 (361)
Q Consensus 139 ~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~ 183 (361)
+||+|++++++++.||++|+++|+||++++|||+++||++|.++.
T Consensus 120 ~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~~~ 164 (192)
T PRK00414 120 TSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRVPH 164 (192)
T ss_pred CCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCC
Confidence 999999999999999999999999999999999999999999876
No 38
>PRK13937 phosphoheptose isomerase; Provisional
Probab=99.59 E-value=4.5e-15 Score=130.48 Aligned_cols=124 Identities=19% Similarity=0.185 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhhhhccCccceeeeccCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEe-cc--------
Q psy1915 49 IAIMEGAFALCFKSKLFPGECVATRRGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVEL-AS-------- 119 (361)
Q Consensus 49 ~~~l~~~~~~~~~~~~~~~~~~~~~~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~-~~-------- 119 (361)
.+.++++.+.+.... .+.++++++|+|.|+.+|...+..+. .++.+. ..|+++.... +.
T Consensus 21 ~~~l~~aa~~i~~~l--------~~a~rI~i~G~G~S~~~A~~~a~~~~---~~~~~~-r~g~~~~~~~~d~~~~~~~~~ 88 (188)
T PRK13937 21 LEAIAKVAEALIEAL--------ANGGKILLCGNGGSAADAQHIAAELV---GRFKKE-RPALPAIALTTDTSALTAIGN 88 (188)
T ss_pred HHHHHHHHHHHHHHH--------HCCCEEEEEeCcHhHHHHHHHHHHhh---ccccCC-CCCcceEeccCcHHHHHHHhc
Confidence 345555555554322 33478999999999987653321111 012122 3577766542 11
Q ss_pred cc--c-----ccCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccC
Q psy1915 120 DF--L-----DRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAG 184 (361)
Q Consensus 120 e~--~-----~~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~ 184 (361)
+. . ......+++|++|+||+||+|++++++++.||++|+++|+||++++|||++.||+.|.++..
T Consensus 89 d~~~~~~~~~~~~~~~~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~~~~ 160 (188)
T PRK13937 89 DYGFERVFSRQVEALGRPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIVPSD 160 (188)
T ss_pred cCCHHHHHHHHHHhhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCCC
Confidence 11 0 11235789999999999999999999999999999999999999999999999999998763
No 39
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=99.58 E-value=7.1e-15 Score=128.06 Aligned_cols=102 Identities=24% Similarity=0.248 Sum_probs=79.2
Q ss_pred cCCcEEEEeccccccccccchhhhhHHHHHHHHH----hcCCceEEEe--cccccc--------------cCCCCCCCCE
Q psy1915 74 RGSPLLVGIKTKTRLATDHIPILYGKATRQLLEE----LTELPVMVEL--ASDFLD--------------RNTPVFRDDV 133 (361)
Q Consensus 74 ~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~----~~g~~~~~~~--~~e~~~--------------~~~~~~~~dl 133 (361)
+++++++|+|.|+.+|.++... +..+ ..|+++.... +.++.. ....++++|+
T Consensus 33 ~~~I~i~G~G~S~~~A~~~~~~--------l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv 104 (177)
T cd05006 33 GGKILICGNGGSAADAQHFAAE--------LVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQVEALGQPGDV 104 (177)
T ss_pred CCEEEEEeCcHHHHHHHHHHHH--------HhchhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHHHHHHhCCCCCE
Confidence 3689999999999988643311 1111 1467776654 111100 1135789999
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEccc
Q psy1915 134 CFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINA 183 (361)
Q Consensus 134 vI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~ 183 (361)
+|++|+||+|++++++++.||++|+++|+||++++|||+++||+.|.++.
T Consensus 105 ~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~~ 154 (177)
T cd05006 105 LIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVPS 154 (177)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999999865
No 40
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=99.58 E-value=2.7e-15 Score=127.68 Aligned_cols=108 Identities=18% Similarity=0.146 Sum_probs=82.5
Q ss_pred ccCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEe-ccc--------cc----c---cCCCCCCCCEEEE
Q psy1915 73 RRGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVEL-ASD--------FL----D---RNTPVFRDDVCFF 136 (361)
Q Consensus 73 ~~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~-~~e--------~~----~---~~~~~~~~dlvI~ 136 (361)
+.++++++|+|+|+.+|++.+..+. .++.+. ..|+++.+.. +.+ .. + .....+++|++|+
T Consensus 10 ~a~rI~~~G~G~S~~~A~~~a~~~~---~~~~~~-~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~~i~ 85 (154)
T TIGR00441 10 AGGKVLICGNGGSACDAQHFAAELT---GRYREN-RPGLPAIALSADVSHLTCVSNDYGYEDVFSRQVEALGQKGDVLLG 85 (154)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHhh---cccccC-CCCceEEecCCcHHHHHHhhccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 3479999999999998876532221 022222 3678877654 221 00 0 1134689999999
Q ss_pred EcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccC
Q psy1915 137 ISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAG 184 (361)
Q Consensus 137 iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~ 184 (361)
||+||+|++++++++.||++|+++|+||++++|||+++||++|.++..
T Consensus 86 iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~~~~~ 133 (154)
T TIGR00441 86 ISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELRVPHF 133 (154)
T ss_pred EcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCCC
Confidence 999999999999999999999999999999999999999999988763
No 41
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=99.57 E-value=1.3e-14 Score=127.61 Aligned_cols=107 Identities=21% Similarity=0.194 Sum_probs=82.8
Q ss_pred cCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEec-ccccc---------------cCCCCCCCCEEEEE
Q psy1915 74 RGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELA-SDFLD---------------RNTPVFRDDVCFFI 137 (361)
Q Consensus 74 ~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~-~e~~~---------------~~~~~~~~dlvI~i 137 (361)
.++++++|.|.|+..|++.+..|.. .+...+.|+|+.+..+ ..... .....+++|++|+|
T Consensus 41 ~~rI~~~G~GgSa~~A~~~a~~l~~----~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql~~~~~~gDvli~i 116 (196)
T PRK10886 41 GNKILCCGNGTSAANAQHFAASMIN----RFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAI 116 (196)
T ss_pred CCEEEEEECcHHHHHHHHHHHHHhc----cccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHHHHcCCCCCEEEEE
Confidence 4799999999999988766533320 1111246888876532 22111 12357899999999
Q ss_pred cCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccc---cCeeEEcccC
Q psy1915 138 SQSGETADSLMALRYCKARGALIVGVTNTVGSSISRE---SHCGIHINAG 184 (361)
Q Consensus 138 S~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~---ad~~l~~~~~ 184 (361)
|.||+|++++++++.||++|+++|+||++++|||+++ +|..|.+|..
T Consensus 117 S~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ip~~ 166 (196)
T PRK10886 117 STRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSH 166 (196)
T ss_pred eCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEEEcCCC
Confidence 9999999999999999999999999999999999997 7999999863
No 42
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=99.55 E-value=2e-14 Score=118.52 Aligned_cols=108 Identities=25% Similarity=0.338 Sum_probs=102.0
Q ss_pred HhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHHHHHHHHHHcC
Q psy1915 251 MYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARD 330 (361)
Q Consensus 251 l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~~~~~~~~~g 330 (361)
+.++++++++|.|.++++|++++++++++.+.....++.+++.|+|...+++++++|+++.+|+++ ++.+.++.++++|
T Consensus 2 i~~~~~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~-~~~~~~~~ak~~g 80 (131)
T PF01380_consen 2 IAKAKRIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETR-ELIELLRFAKERG 80 (131)
T ss_dssp HTTSSEEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTH-HHHHHHHHHHHTT
T ss_pred CCCCCEEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccch-hhhhhhHHHHhcC
Confidence 567899999999999999999999999999999999999999999999999999999999999986 7888999999999
Q ss_pred CcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 331 GRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 331 ~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
.++|.||+.+++++.+.+|.++.+|..++
T Consensus 81 ~~vi~iT~~~~~~l~~~ad~~l~~~~~~~ 109 (131)
T PF01380_consen 81 APVILITSNSESPLARLADIVLYIPTGEE 109 (131)
T ss_dssp SEEEEEESSTTSHHHHHSSEEEEEESSCG
T ss_pred CeEEEEeCCCCCchhhhCCEEEEecCCCc
Confidence 99999999999999999999999998765
No 43
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=99.55 E-value=3.8e-14 Score=115.31 Aligned_cols=110 Identities=25% Similarity=0.317 Sum_probs=83.2
Q ss_pred CcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEecccccccCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q psy1915 76 SPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKA 155 (361)
Q Consensus 76 ~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ak~ 155 (361)
+++++|+|.|..++.. ..+++.+..++++....+.+. ....+++|++|++|+||+|++++++++.||+
T Consensus 1 ~I~i~G~G~S~~~a~~---------~~~~l~~~~~~~~~~~~~~~~---~~~~~~~dl~I~iS~SG~t~e~i~~~~~a~~ 68 (119)
T cd05017 1 NIVILGMGGSGIGGDL---------LESLLLDEAKIPVYVVKDYTL---PAFVDRKTLVIAVSYSGNTEETLSAVEQAKE 68 (119)
T ss_pred CEEEEEcCHHHHHHHH---------HHHHHHhccCCCEEEecCccC---cCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
Confidence 4789999999987742 245555556888877655442 2367899999999999999999999999999
Q ss_pred cCCeEEEEEcCCCCccccccC----eeEEcccCCCcccccchhHHHHHHHHH
Q psy1915 156 RGALIVGVTNTVGSSISRESH----CGIHINAGPEIGVASTKAYTSQFISLV 203 (361)
Q Consensus 156 ~g~~~i~IT~~~~S~la~~ad----~~l~~~~~~e~~~~~t~s~t~~~~~l~ 203 (361)
+|+++|+||+ +++++++|| ..+.++.+.. ...+|++.+..+.
T Consensus 69 ~g~~iI~IT~--~~~l~~~~~~~~~~~~~~p~~~~----~r~s~~~~~~~~~ 114 (119)
T cd05017 69 RGAKIVAITS--GGKLLEMAREHGVPVIIIPKGLQ----PRAAFPYLFTALL 114 (119)
T ss_pred CCCEEEEEeC--CchHHHHHHHcCCcEEECCCCCC----CceeHHHHHHHHH
Confidence 9999999997 468999998 5666655321 2247777665543
No 44
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.53 E-value=6.9e-13 Score=137.67 Aligned_cols=114 Identities=11% Similarity=0.121 Sum_probs=100.8
Q ss_pred HHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHHHHH
Q psy1915 244 VQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNAL 323 (361)
Q Consensus 244 ~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~~~ 323 (361)
+.+.++.+.+.++++|+|+|.+|.+|+.++..+.+..++++....+.||.+.+.. ..+++++|+++.+|++. ++++++
T Consensus 353 l~~~~~~l~~~~~I~~~G~GsS~~aa~~a~~~l~kl~~i~v~~~~~sef~~~~~~-~~~~~lvI~ISqSGeT~-eti~Al 430 (680)
T PLN02981 353 LKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSGVPVTMELASDLLDRQGP-IYREDTAVFVSQSGETA-DTLRAL 430 (680)
T ss_pred HHHHHHHHhcCCEEEEEEecHHHHHHHHHHHHHHHHhCCCEEEecchHHHhcccc-CCCCCeEEEEeCCcCCH-HHHHHH
Confidence 4455667788999999999999999999999999999999999999999876544 56788999999999996 799999
Q ss_pred HHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 324 LQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 324 ~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
+.++++|.++++||+.+++++++.+|.++.+|...|
T Consensus 431 ~~Ak~~Ga~~IaITn~~~S~La~~ad~~i~~~~g~E 466 (680)
T PLN02981 431 EYAKENGALCVGITNTVGSAISRGTHCGVHINAGAE 466 (680)
T ss_pred HHHHHCCCcEEEEECCCCChhHhccCeeEEecCccc
Confidence 999999999999999999999999999999986544
No 45
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=99.51 E-value=1.8e-13 Score=113.56 Aligned_cols=122 Identities=19% Similarity=0.243 Sum_probs=92.6
Q ss_pred CCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEecccccc-cCCCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q psy1915 75 GSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFLD-RNTPVFRDDVCFFISQSGETADSLMALRYC 153 (361)
Q Consensus 75 g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~~-~~~~~~~~dlvI~iS~SG~t~e~~~a~~~a 153 (361)
++++++|+|.|..+|... .+.+++ .|.++....+.+... ......++|++|++|.||+|++++++++.+
T Consensus 14 ~~i~i~g~g~s~~~a~~~---------~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~~~a 83 (139)
T cd05013 14 RRIYIFGVGSSGLVAEYL---------AYKLLR-LGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAEIA 83 (139)
T ss_pred CEEEEEEcCchHHHHHHH---------HHHHHH-cCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 588999999998877532 344443 577777765544322 223567899999999999999999999999
Q ss_pred HHcCCeEEEEEcCCCCccccccCeeEEcccCCCcccccchhHHHHHHHHHHHHHH
Q psy1915 154 KARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALV 208 (361)
Q Consensus 154 k~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~~~~t~s~t~~~~~l~~l~~~ 208 (361)
|++|+++|+||++.++|+++++|+.+.++..++. .....+.++..+++++.+.
T Consensus 84 ~~~g~~iv~iT~~~~~~l~~~~d~~i~~~~~~~~--~~~~~~~~~~~~~~~~d~l 136 (139)
T cd05013 84 KERGAKVIAITDSANSPLAKLADIVLLVSSEEGD--FRSSAFSSRIAQLALIDAL 136 (139)
T ss_pred HHcCCeEEEEcCCCCChhHHhcCEEEEcCCCccc--cccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876543 1223455555555555543
No 46
>PRK13936 phosphoheptose isomerase; Provisional
Probab=99.49 E-value=3.4e-13 Score=119.37 Aligned_cols=109 Identities=22% Similarity=0.235 Sum_probs=77.7
Q ss_pred eccCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEE-ec--------cc--cc--c---cCCCCCCCCEEE
Q psy1915 72 TRRGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVE-LA--------SD--FL--D---RNTPVFRDDVCF 135 (361)
Q Consensus 72 ~~~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~-~~--------~e--~~--~---~~~~~~~~dlvI 135 (361)
.++++++++|.|.|+.+|.+....|.. + +.....|+++... .+ .+ +. . .....+++|++|
T Consensus 41 ~~a~~I~i~G~G~S~~~A~~~~~~l~~---r-~~~~r~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~~~Dv~i 116 (197)
T PRK13936 41 LNEGKILACGNGGSAADAQHFSAELLN---R-FERERPSLPAIALTTDTSTLTAIANDYSYNEVFSKQVRALGQPGDVLL 116 (197)
T ss_pred HCCCEEEEEeCcHhHHHHHHHHHHccC---c-cCCCCccceeEecCCcHHHHHHHhhcCCHHHHHHHHHHHhCCCCCEEE
Confidence 344799999999999887654322210 0 0000134555432 11 11 10 0 023457999999
Q ss_pred EEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccc---cCeeEEcccC
Q psy1915 136 FISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRE---SHCGIHINAG 184 (361)
Q Consensus 136 ~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~---ad~~l~~~~~ 184 (361)
+||+||+|++++++++.||++|+++|+||++++|||+++ ||+.|.++..
T Consensus 117 ~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~~~ 168 (197)
T PRK13936 117 AISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVPAE 168 (197)
T ss_pred EEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeCCC
Confidence 999999999999999999999999999999999999995 9999998764
No 47
>PRK02947 hypothetical protein; Provisional
Probab=99.48 E-value=1.5e-13 Score=125.71 Aligned_cols=106 Identities=18% Similarity=0.159 Sum_probs=75.3
Q ss_pred cCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEE-----------Eecccc---cccCCCCCCCCEEEEEcC
Q psy1915 74 RGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMV-----------ELASDF---LDRNTPVFRDDVCFFISQ 139 (361)
Q Consensus 74 ~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~-----------~~~~e~---~~~~~~~~~~dlvI~iS~ 139 (361)
+++|+++|.|.|+.+|.++..+|.. ....+..+.+... ....++ ......++++|++|+||+
T Consensus 40 a~~I~i~G~G~S~~vA~~~~~rlg~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~i~iS~ 115 (246)
T PRK02947 40 GGLIYVFGTGHSHILAEEVFYRAGG----LAPVNPILEPSLMLHEGAVASSYLERVEGYAKAILDRYDIRPGDVLIVVSN 115 (246)
T ss_pred CCEEEEEcCcHHHHHHHHhcccccc----CcccCCCCCHHHhccccHHHHHHhhhcccHHHHHHHHcCCCCCCEEEEEeC
Confidence 4789999999999988655433210 0000011222110 011111 112356899999999999
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEEcCCC-----------CccccccCeeEEccc
Q psy1915 140 SGETADSLMALRYCKARGALIVGVTNTVG-----------SSISRESHCGIHINA 183 (361)
Q Consensus 140 SG~t~e~~~a~~~ak~~g~~~i~IT~~~~-----------S~la~~ad~~l~~~~ 183 (361)
||+|++++++++.||++|+++|+||++++ |||++.||++|.++.
T Consensus 116 sG~t~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~~~~ 170 (246)
T PRK02947 116 SGRNPVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVLDNGA 170 (246)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEEEcCC
Confidence 99999999999999999999999999985 799999999998755
No 48
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.44 E-value=4.6e-12 Score=131.18 Aligned_cols=112 Identities=12% Similarity=0.113 Sum_probs=99.4
Q ss_pred HHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHHHHHHH
Q psy1915 246 QLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQ 325 (361)
Q Consensus 246 ~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~~~~~ 325 (361)
+.++.+.+.++++++|+|.++..|+.+...+....+++.....+.||.+... .+++++++|+++.+|++. +++++++.
T Consensus 346 ~~~~~l~~a~rI~ivG~GtS~~aa~~ak~~~~kl~~i~v~v~~asef~~~~~-~~~~~dlvI~ISqSGeT~-dtl~Al~~ 423 (670)
T PTZ00394 346 QSIRAILTSRRILFIACGTSLNSCLAVRPLFEELVPLPISVENASDFLDRRP-RIQRDDVCFFVSQSGETA-DTLMALQL 423 (670)
T ss_pred HHHHHHhCCCEEEEEEechHHHHHHHHHHHHHHhcCCCEEEeccchhhhhcc-CCCCCCEEEEEECCcCcH-HHHHHHHH
Confidence 3446677899999999999999999999999999999999888899987543 358899999999999996 79999999
Q ss_pred HHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 326 VIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 326 ~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
++++|+++|+||+..++++++.+|+++.++...|
T Consensus 424 Ak~~Ga~tIaITn~~~S~La~~AD~~l~~~ag~E 457 (670)
T PTZ00394 424 CKEAGAMCVGITNVVGSSISRLTHYAIHLNAGVE 457 (670)
T ss_pred HHHCCCcEEEEECCCCCHHHHhcCeEEEeccccc
Confidence 9999999999999999999999999999876544
No 49
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=2e-12 Score=107.67 Aligned_cols=127 Identities=22% Similarity=0.182 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHhhhhccCccceeeeccCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEe-c------
Q psy1915 46 ARHIAIMEGAFALCFKSKLFPGECVATRRGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVEL-A------ 118 (361)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~-~------ 118 (361)
+...++++.+-..++....++ ++++.+|-|+|..=|+-++..|. .+|.++ +-++|..+.+ +
T Consensus 21 ~~l~~~I~~aa~~i~~~l~~G--------~Kvl~cGNGgSaadAqHfaael~---gRf~~e-R~~lpaIaLt~dsS~lTa 88 (176)
T COG0279 21 EALIEAIERAAQLLVQSLLNG--------NKVLACGNGGSAADAQHFAAELT---GRFEKE-RPSLPAIALSTDSSVLTA 88 (176)
T ss_pred HHhHHHHHHHHHHHHHHHHcC--------CEEEEECCCcchhhHHHHHHHHh---hHHHhc-CCCCCeeEeecccHHHhh
Confidence 344455555555555555555 46666677877643332222232 344444 4678887754 2
Q ss_pred --ccccc-------cCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccC
Q psy1915 119 --SDFLD-------RNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAG 184 (361)
Q Consensus 119 --~e~~~-------~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~ 184 (361)
.||-+ ....-.++|++|+||.||+++.++++++.||++|.+||++|++.+..++.++|+.|.+|..
T Consensus 89 i~NDy~yd~vFsRqveA~g~~GDvLigISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~~~D~~i~VPs~ 163 (176)
T COG0279 89 IANDYGYDEVFSRQVEALGQPGDVLIGISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLAGLLDVEIRVPST 163 (176)
T ss_pred hhccccHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccccccceEEecCCC
Confidence 22211 1245679999999999999999999999999999999999999999999999999999764
No 50
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=99.39 E-value=6.3e-12 Score=120.60 Aligned_cols=130 Identities=12% Similarity=0.114 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHc-ccHHHHHHHHHHhc--CCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCC
Q psy1915 227 LKVIHEQIREVLQ-MDSEVQQLAKEMYE--QKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNS 303 (361)
Q Consensus 227 l~~l~~~~~~~l~-~~~~~~~~a~~l~~--~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~ 303 (361)
.++.|..+++.+. ..+..+++++.+.+ .++++|+|+|.++..|+.++.++.+..++++..+...+|.+.....++++
T Consensus 14 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~I~~~g~GsS~~aa~~~~~~~~k~~~i~v~~~~~~~~~~~~~~~~~~~ 93 (340)
T PRK11382 14 TENMVQEVEKVLSHDVPLVHAIVEEMVKRDIDRIYFVACGSPLNAAQTAKHLADRFSDLQVYAISGWEFCDNTPYRLDDR 93 (340)
T ss_pred HhhchHHHHHHHHhhhHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHHcCCCeEEeccHHHHhcCCcCCCCC
Confidence 4566777777776 44667888888875 78999999999999999999999999999999999999998665557899
Q ss_pred CcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCC
Q psy1915 304 MPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHT 357 (361)
Q Consensus 304 ~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~ 357 (361)
+++|+++.+|++. +++++++.++++|+++|+||+.+++++.+.+|+++.++.+
T Consensus 94 ~lvI~iS~SGeT~-e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~ag 146 (340)
T PRK11382 94 CAVIGVSDYGKTE-EVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQAD 146 (340)
T ss_pred CEEEEEcCCCCCH-HHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEeCCC
Confidence 9999999999997 7999999999999999999999999999999999998853
No 51
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.36 E-value=6.5e-11 Score=122.17 Aligned_cols=243 Identities=20% Similarity=0.291 Sum_probs=159.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhccCccceeeeccCCcEEEEecc-ccccccccchhhhhHHHHHHHHHhcCCceEEEecccc
Q psy1915 43 DHLARHIAIMEGAFALCFKSKLFPGECVATRRGSPLLVGIKT-KTRLATDHIPILYGKATRQLLEELTELPVMVELASDF 121 (361)
Q Consensus 43 d~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~i~~~G~G~-S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~ 121 (361)
++++++++++++.|+.++.+...|++++++++++++++|... ..++|++.. .++. .+..+
T Consensus 145 ~a~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~PL~~g~~~~~~~~aSE~~---------al~~--~~~~~-------- 205 (604)
T PRK00331 145 EAVRKALKRLEGAYALAVIDKDEPDTIVAARNGSPLVIGLGEGENFLASDAL---------ALLP--YTRRV-------- 205 (604)
T ss_pred HHHHHHHHhccCeeEEEEEecCCCCEEEEEECCCceEEEEcCCeEEEEECHH---------HHHH--hcCEE--------
Confidence 467788899999999988766667889999999999999865 345565432 1111 11111
Q ss_pred cccCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccCCCcccccchhHHHHHHH
Q psy1915 122 LDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFIS 201 (361)
Q Consensus 122 ~~~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~~~~t~s~t~~~~~ 201 (361)
..+.|+++++. +..| +-+.+..+.+..... ..+.... .+.....-..+
T Consensus 206 ----~~l~pg~~~~i-~~~~-------------------~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~------ 253 (604)
T PRK00331 206 ----IYLEDGEIAVL-TRDG-------------------VEIFDFDGNPVEREV-YTVDWDA-SAAEKGGYRHF------ 253 (604)
T ss_pred ----EEECCCeEEEE-ECCe-------------------EEEEeCCCCcccCce-EEEeCCH-HHhccCCCchH------
Confidence 12345555554 3222 122322121211111 1111110 00000000111
Q ss_pred HHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHccc----HHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHH
Q psy1915 202 LVMFALVMCEDRISLQTRRNEIIKGLKVIHEQIREVLQMD----SEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIK 277 (361)
Q Consensus 202 l~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~----~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~ 277 (361)
+.+++.+-|+.+++.+... +...+.++.+.+.++++++|+|.++.++..+...+.
T Consensus 254 ---------------------m~~eI~eqP~~l~~~~~~~~~~~~~~~~~~~~l~~a~~I~~~G~GsS~~aa~~a~~~~~ 312 (604)
T PRK00331 254 ---------------------MLKEIYEQPEAIRDTLEGRLDELGEGELADEDLKKIDRIYIVACGTSYHAGLVAKYLIE 312 (604)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHhhhccccchhhhHHHHhcCCEEEEEEeecHHHHHHHHHHHHH
Confidence 1222334455555444311 123344667778999999999999999999999999
Q ss_pred HhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCC
Q psy1915 278 ELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHT 357 (361)
Q Consensus 278 E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~ 357 (361)
...++++......+|.+.+. ..++++++|+++.+|++. +++++++.++++|.++|+||+.+++++++.+|+++.++..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~-~~~~~dlvI~iS~SG~T~-e~i~a~~~ak~~ga~~IaIT~~~~S~La~~aD~~l~~~~~ 390 (604)
T PRK00331 313 SLAGIPVEVEIASEFRYRDP-VLSPKTLVIAISQSGETA-DTLAALRLAKELGAKTLAICNVPGSTIARESDAVLYTHAG 390 (604)
T ss_pred HHcCCCEEEEehhhhhccCC-CCCCCeEEEEEcCCCCCH-HHHHHHHHHHHCCCCEEEEECCCCChhHHhcCcEEEecCc
Confidence 99999988888888877443 357889999999999996 7999999999999999999999999999999999998764
Q ss_pred CC
Q psy1915 358 VD 359 (361)
Q Consensus 358 ~~ 359 (361)
.+
T Consensus 391 ~e 392 (604)
T PRK00331 391 PE 392 (604)
T ss_pred Cc
Confidence 43
No 52
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=99.33 E-value=1.2e-11 Score=104.70 Aligned_cols=124 Identities=17% Similarity=0.124 Sum_probs=98.8
Q ss_pred CCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEecccccccCC-CCCCCCEEEEEcCCCCcHH-HHHHHHH
Q psy1915 75 GSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFLDRNT-PVFRDDVCFFISQSGETAD-SLMALRY 152 (361)
Q Consensus 75 g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~t~e-~~~a~~~ 152 (361)
.+++++|+|.|+.+|.+. .+.+.+..++++....+.+|.+.+. .++++|++|++|++|+|.+ +.++++.
T Consensus 14 ~~i~~~G~G~s~~~a~e~---------~~kl~e~~~i~~~~~~~~e~~hg~~~~~~~~~~vi~is~~g~t~~~~~~~~~~ 84 (153)
T cd05009 14 KSFYVLGRGPNYGTALEG---------ALKLKETSYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPEDRLEEKLESLIKE 84 (153)
T ss_pred CcEEEEcCCCCHHHHHHH---------HHHHHHHHhhcceeccHHHhccChhhhccCCCcEEEEecCChhHHHHHHHHHH
Confidence 589999999999888654 4555666668999999999877553 5889999999999999876 8999999
Q ss_pred HHHcCCeEEEEEcCCCCccccccCeeEEcccCCCcccccchhHHHHHHHHHHHHHHHhhhhc
Q psy1915 153 CKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRI 214 (361)
Q Consensus 153 ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~~~~t~s~t~~~~~l~~l~~~~~~~~~ 214 (361)
+|++|+++++||++.+| ++.+|..+.++..++. -+...++..+.+++..++..++
T Consensus 85 ~~~~~~~vi~it~~~~s--~~~~d~~i~~~~~~~~-----~~~~~~~~~~q~la~~~a~~~g 139 (153)
T cd05009 85 VKARGAKVIVITDDGDA--KDLADVVIRVPATVEE-----LSPLLYIVPLQLLAYHLAVARG 139 (153)
T ss_pred HHHcCCEEEEEecCCcc--cccCCeEEECCCCchh-----HHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999888 8999999988764331 2445566667777777665443
No 53
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.33 E-value=1.1e-10 Score=121.08 Aligned_cols=112 Identities=19% Similarity=0.167 Sum_probs=97.2
Q ss_pred HHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCc-ceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHHHHH
Q psy1915 245 QQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYM-HSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNAL 323 (361)
Q Consensus 245 ~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~-~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~~~ 323 (361)
++.++.+.+.++++++|+|.++.+|..++.+|....++ ++......++.+-. ..++++++|+++.+|++. ++++++
T Consensus 313 ~~~~~~l~~~~~I~i~g~GsS~~aa~~~~~~l~~~~~~~~v~~~~~s~~~~~~--~~~~~~lvI~ISqSGeT~-d~i~al 389 (640)
T PTZ00295 313 DQYLEELLNIKNLILVGCGTSYYAALFAASIMQKLKCFNTVQVIDASELTLYR--LPDEDAGVIFISQSGETL-DVVRAL 389 (640)
T ss_pred HHHHHHHhcCCEEEEEEeehHHHHHHHHHHHHHHhCCCCceEEechHHhhhhc--cCCCCCEEEEEeCCCCcH-HHHHHH
Confidence 35556678899999999999999999999999999887 46677777887644 346889999999999996 799999
Q ss_pred HHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 324 LQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 324 ~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
+.++++|.++|+||+.+++++++.+|.++.++.+.|
T Consensus 390 ~~ak~~Ga~~IaITn~~~S~La~~ad~~l~~~ag~E 425 (640)
T PTZ00295 390 NLADELNLPKISVVNTVGSLIARSTDCGVYLNAGRE 425 (640)
T ss_pred HHHHHCCCCEEEEECCCCChhHHhcCEEEEeCCcCc
Confidence 999999999999999999999999999999875544
No 54
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=99.32 E-value=1.6e-11 Score=100.62 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=91.6
Q ss_pred eEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEE
Q psy1915 256 SMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIV 335 (361)
Q Consensus 256 ~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~ 335 (361)
+++++|.|.++.+|.+++.++.+..+.++..+...++.|.+.. +++++++|+++.+|++. +++++++.++++|+++|+
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~I~iS~sG~t~-e~~~~~~~a~~~g~~vi~ 78 (126)
T cd05008 1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPL-LDEDTLVIAISQSGETA-DTLAALRLAKEKGAKTVA 78 (126)
T ss_pred CEEEEEccHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCC-CCCCcEEEEEeCCcCCH-HHHHHHHHHHHcCCeEEE
Confidence 4789999999999999999999998889998887788877654 78999999999999986 699999999999999999
Q ss_pred EecCCCchhhhcccceEEcCCC
Q psy1915 336 ICEKGDTETQALATKTLEVPHT 357 (361)
Q Consensus 336 I~~~~~~~~~~~~d~~i~~p~~ 357 (361)
||+.+++++++.+|+++.+|..
T Consensus 79 iT~~~~s~la~~ad~~l~~~~~ 100 (126)
T cd05008 79 ITNVVGSTLAREADYVLYLRAG 100 (126)
T ss_pred EECCCCChHHHhCCEEEEecCC
Confidence 9999999999999999999875
No 55
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=99.31 E-value=1.4e-11 Score=100.30 Aligned_cols=102 Identities=14% Similarity=0.099 Sum_probs=94.4
Q ss_pred eEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEE
Q psy1915 256 SMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIV 335 (361)
Q Consensus 256 ~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~ 335 (361)
+++++|.|.++.+|..+..++.++.++++..+...++.|.+...+++++.+|+++.+|++. +++++++.++++|.++|+
T Consensus 1 ~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~I~iS~SG~t~-~~~~~~~~a~~~g~~vi~ 79 (120)
T cd05710 1 NVFFVGCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNTK-ETVAAAKFAKEKGATVIG 79 (120)
T ss_pred CEEEEEecHHHHHHhHHHHHHHHhcCCceEEEcHHHHhhcCcccCCCCcEEEEEeCCCCCh-HHHHHHHHHHHcCCeEEE
Confidence 4789999999999999999999988899998888999988777789999999999999986 799999999999999999
Q ss_pred EecCCCchhhhcccceEEcCCCC
Q psy1915 336 ICEKGDTETQALATKTLEVPHTV 358 (361)
Q Consensus 336 I~~~~~~~~~~~~d~~i~~p~~~ 358 (361)
||+.+++++++.+|.++.+|...
T Consensus 80 iT~~~~s~la~~ad~~l~~~~~~ 102 (120)
T cd05710 80 LTDDEDSPLAKLADYVIVYGFEI 102 (120)
T ss_pred EECCCCCcHHHhCCEEEEccCCc
Confidence 99999999999999999998763
No 56
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=99.30 E-value=2e-11 Score=101.15 Aligned_cols=113 Identities=16% Similarity=0.088 Sum_probs=101.3
Q ss_pred HHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHHHHH
Q psy1915 244 VQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNAL 323 (361)
Q Consensus 244 ~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~~~ 323 (361)
++++++.+.+++++++.|+|.++.+|.+++.++.+. +.++......+..|++...+++++++|+++.+|.+. .+++.+
T Consensus 3 i~~~~~~i~~~~~i~i~g~g~s~~~a~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~-~~~~~~ 80 (139)
T cd05013 3 LEKAVDLLAKARRIYIFGVGSSGLVAEYLAYKLLRL-GKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETK-ETVEAA 80 (139)
T ss_pred HHHHHHHHHhCCEEEEEEcCchHHHHHHHHHHHHHc-CCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCH-HHHHHH
Confidence 567888888999999999999999999999999887 567788877888888877788999999999999885 688899
Q ss_pred HHHHHcCCcEEEEecCCCchhhhcccceEEcCCCC
Q psy1915 324 LQVIARDGRPIVICEKGDTETQALATKTLEVPHTV 358 (361)
Q Consensus 324 ~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~ 358 (361)
+.++++|.++++||+..++++.+.+|+++.+|...
T Consensus 81 ~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~~~~~ 115 (139)
T cd05013 81 EIAKERGAKVIAITDSANSPLAKLADIVLLVSSEE 115 (139)
T ss_pred HHHHHcCCeEEEEcCCCCChhHHhcCEEEEcCCCc
Confidence 99999999999999999999999999999998765
No 57
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=99.26 E-value=9.7e-11 Score=111.23 Aligned_cols=133 Identities=11% Similarity=0.099 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHc-ccHHHHHHHHHHhcC--CeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccC
Q psy1915 226 GLKVIHEQIREVLQ-MDSEVQQLAKEMYEQ--KSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDN 302 (361)
Q Consensus 226 ~l~~l~~~~~~~l~-~~~~~~~~a~~l~~~--~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~ 302 (361)
++++.|+...+.+. ..+...+++..+.+. .+++++|+|.++.+++.++.-+++....++.++.+.||.|.|.....+
T Consensus 8 e~~~~p~~~~~~~~~~~~~~~~l~~~l~~~~~~~I~~~g~GsS~~~~~~~~~~~~~~~~~~~~~~~~se~~~~~~~~~~~ 87 (340)
T COG2222 8 EIEQQPAVVARLLEANRAVLAELADFLRKRGIDRILFVGCGSSLHAATPAKYLLERELGLLVAAIPASEFLTNGAKYLGE 87 (340)
T ss_pred HHHhhHHHHHHHHHhhhhHHHHHHHHHHhCCCcEEEEEecCchHHHHHHHHHHHHHhhCceeeeechhHHhccCccccCC
Confidence 34455555555554 344567777777765 599999999999999999999998888889999999999988888888
Q ss_pred CCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 303 SMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 303 ~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
+..+|.++.+|++. +++.+++.++..|.+++.||+..|+++++.+|++|.++...+
T Consensus 88 ~~lvi~~S~SG~Tp-E~vaa~~~a~~~ga~~i~lT~~~dSpLa~~ad~~i~~~~~~e 143 (340)
T COG2222 88 DSLVIAFSQSGNTP-ESVAAAELAKEGGALTIALTNEEDSPLARAADYVIPYLAGEE 143 (340)
T ss_pred CeEEEEEeCCCCCH-HHHHHHHHhccCCCeEEEEecCCCChhhhcCCeeeeccCCch
Confidence 99999999999996 788999999999999999999999999999999999987665
No 58
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.26 E-value=3.9e-10 Score=116.47 Aligned_cols=109 Identities=16% Similarity=0.174 Sum_probs=95.6
Q ss_pred HHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHHHHHHHHHH
Q psy1915 249 KEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIA 328 (361)
Q Consensus 249 ~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~~~~~~~~ 328 (361)
+.+.+.++++++|+|.++..+..+...+.....+++......+|.+.. ..+++++++|+++.+|++. +++++++.+++
T Consensus 286 ~~l~~~~~I~~~G~GsS~~aa~~a~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~dlvI~iS~SG~T~-e~v~a~~~ak~ 363 (607)
T TIGR01135 286 ELLKNVDRIQIVACGTSYHAGLVAKYLIERLAGIPVEVEIASEFRYRK-PVVDKDTLVIAISQSGETA-DTLAALRLAKE 363 (607)
T ss_pred hHhccCCEEEEEEeechHHHHHHHHHHHHHhcCCCEEEecHHHHhhcC-CCCCCCCEEEEEeCCCCCH-HHHHHHHHHHH
Confidence 346678999999999999999999988888889999888888887643 3468899999999999996 79999999999
Q ss_pred cCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 329 RDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 329 ~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
+|+++|+||+.+++++++.+|+++.++...|
T Consensus 364 ~ga~~IaIT~~~~S~La~~ad~~l~~~~~~e 394 (607)
T TIGR01135 364 LGAKTLGICNVPGSTLVRESDHTLYTRAGPE 394 (607)
T ss_pred cCCcEEEEECCCCChHHhhcCceEEecCCCc
Confidence 9999999999999999999999999986544
No 59
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=99.23 E-value=5.8e-10 Score=97.23 Aligned_cols=114 Identities=17% Similarity=0.132 Sum_probs=101.8
Q ss_pred HHHHHHHHhc-CCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHHHH
Q psy1915 244 VQQLAKEMYE-QKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNA 322 (361)
Q Consensus 244 ~~~~a~~l~~-~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~~ 322 (361)
+.+..+.+.+ ..++++.|.|-+--+++-.|..|+-+ +.++......|-.||...++.++++++.++.+|+|. .+...
T Consensus 28 ~~~a~~~i~~~~gkv~V~G~GkSG~Igkk~Aa~L~s~-G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~-el~~~ 105 (202)
T COG0794 28 FVRAVELILECKGKVFVTGVGKSGLIGKKFAARLAST-GTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETK-ELLNL 105 (202)
T ss_pred HHHHHHHHHhcCCcEEEEcCChhHHHHHHHHHHHHcc-CCceEEecCchhccCCccCCCCCCEEEEEeCCCcHH-HHHHH
Confidence 3344444444 67899999999999999999999987 579999999999999999999999999999999996 78889
Q ss_pred HHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 323 LLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 323 ~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
++.+|+.|+++|+||++++|.+++.+|.++.+|...+
T Consensus 106 ~~~aK~~g~~liaiT~~~~SsLak~aDvvl~ip~~~e 142 (202)
T COG0794 106 APKAKRLGAKLIAITSNPDSSLAKAADVVLVIPVKTE 142 (202)
T ss_pred HHHHHHcCCcEEEEeCCCCChHHHhcCeEEEccCccc
Confidence 9999999999999999999999999999999997665
No 60
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=99.22 E-value=4.3e-10 Score=98.11 Aligned_cols=111 Identities=16% Similarity=0.199 Sum_probs=94.8
Q ss_pred cHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHH
Q psy1915 241 DSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCM 320 (361)
Q Consensus 241 ~~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~ 320 (361)
.+.++++++.+.++++++++|.|.++.+|...+.++... +.++.... +.. ...+++++++|+++.+|++. +++
T Consensus 20 ~~~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~-g~~~~~~~--~~~---~~~~~~~D~vI~iS~sG~t~-~~i 92 (179)
T cd05005 20 EEELDKLISAILNAKRIFVYGAGRSGLVAKAFAMRLMHL-GLNVYVVG--ETT---TPAIGPGDLLIAISGSGETS-SVV 92 (179)
T ss_pred HHHHHHHHHHHHhCCeEEEEecChhHHHHHHHHHHHHhC-CCeEEEeC--CCC---CCCCCCCCEEEEEcCCCCcH-HHH
Confidence 456888999999999999999999999999999999865 55665543 221 23568899999999999986 788
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCC
Q psy1915 321 NALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTV 358 (361)
Q Consensus 321 ~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~ 358 (361)
+.++.++++|.++|+||+..++++++.+|.++.+|...
T Consensus 93 ~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~ 130 (179)
T cd05005 93 NAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPAAT 130 (179)
T ss_pred HHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCcc
Confidence 99999999999999999999999999999999998754
No 61
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=99.20 E-value=3.1e-10 Score=106.06 Aligned_cols=117 Identities=17% Similarity=0.175 Sum_probs=103.1
Q ss_pred cHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHH
Q psy1915 241 DSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCM 320 (361)
Q Consensus 241 ~~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~ 320 (361)
.+.+++.++.+.++++++++|.|.+..+|.+++.||..+ +.++..++...+.......+++++++|+|+.+|.++ +++
T Consensus 117 ~~~l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~i-g~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t~-e~i 194 (281)
T COG1737 117 EEALERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRI-GLNVVALSDTHGQLMQLALLTPGDVVIAISFSGYTR-EIV 194 (281)
T ss_pred HHHHHHHHHHHHcCCeEEEEEechhHHHHHHHHHHHHHc-CCceeEecchHHHHHHHHhCCCCCEEEEEeCCCCcH-HHH
Confidence 356788899999999999999999999999999999998 567777776655544455678999999999999987 799
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 321 NALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 321 ~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
+.++.++++|+++|+||+...+|+++.+|+++.+|..++
T Consensus 195 ~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~~~~~ 233 (281)
T COG1737 195 EAAELAKERGAKVIAITDSADSPLAKLADIVLLVPVAEE 233 (281)
T ss_pred HHHHHHHHCCCcEEEEcCCCCCchhhhhceEEeccCccc
Confidence 999999999999999999999999999999999987654
No 62
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=99.19 E-value=7.1e-10 Score=96.69 Aligned_cols=112 Identities=16% Similarity=0.190 Sum_probs=94.4
Q ss_pred cHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHH
Q psy1915 241 DSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCM 320 (361)
Q Consensus 241 ~~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~ 320 (361)
.++++++++.+.++++++++|.|.++.+|.+...+|... +.++... .+.. ...+++++++|+++.+|++. .++
T Consensus 17 ~~~~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~-g~~~~~~--~~~~---~~~~~~~Dv~I~iS~sG~t~-~~i 89 (179)
T TIGR03127 17 EEELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHL-GFNVYVV--GETT---TPSIKKGDLLIAISGSGETE-SLV 89 (179)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHHhC-CCeEEEe--CCcc---cCCCCCCCEEEEEeCCCCcH-HHH
Confidence 356788899999999999999999999999999999876 4455443 3332 23578899999999999986 789
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 321 NALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 321 ~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
+.++.++++|+++|+||+.+++++++++|+++.+|...+
T Consensus 90 ~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~~~~~ 128 (179)
T TIGR03127 90 TVAKKAKEIGATVAAITTNPESTLGKLADVVVEIPAATK 128 (179)
T ss_pred HHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCccc
Confidence 999999999999999999999999999999999986543
No 63
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=99.19 E-value=4.3e-11 Score=91.29 Aligned_cols=79 Identities=27% Similarity=0.327 Sum_probs=66.1
Q ss_pred cEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEeccccccc--CCCCCCCCEEEEEcCCCCcHHHHHHHHHHH
Q psy1915 77 PLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFLDR--NTPVFRDDVCFFISQSGETADSLMALRYCK 154 (361)
Q Consensus 77 i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~~~--~~~~~~~dlvI~iS~SG~t~e~~~a~~~ak 154 (361)
++++|+|.|..++.. .++.+.+..|.++....+.++... ....+++|++|++|+||+|++++++++.+|
T Consensus 1 i~i~g~G~s~~~a~~---------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~ 71 (87)
T cd04795 1 IFVIGIGGSGAIAAY---------FALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAK 71 (87)
T ss_pred CEEEEcCHHHHHHHH---------HHHHHhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHH
Confidence 578999999988753 256666655888888777666443 356789999999999999999999999999
Q ss_pred HcCCeEEEEE
Q psy1915 155 ARGALIVGVT 164 (361)
Q Consensus 155 ~~g~~~i~IT 164 (361)
++|+++|+||
T Consensus 72 ~~g~~ii~it 81 (87)
T cd04795 72 ELGIPVIAIT 81 (87)
T ss_pred HcCCeEEEEe
Confidence 9999999999
No 64
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.16 E-value=8.5e-10 Score=105.10 Aligned_cols=114 Identities=11% Similarity=0.064 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhcC-CeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHH
Q psy1915 242 SEVQQLAKEMYEQ-KSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCM 320 (361)
Q Consensus 242 ~~~~~~a~~l~~~-~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~ 320 (361)
++..+.++.+.+. +++++.|.|.++.+|++++.||... +.++..+...+..|.....+++++++|+++.+|++. .++
T Consensus 29 ~~~~~~~~~l~~~~~~I~i~G~G~S~~~A~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~-~~~ 106 (321)
T PRK11543 29 DDFVRAANIILHCEGKVVVSGIGKSGHIGKKIAATLAST-GTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAK-ELD 106 (321)
T ss_pred HHHHHHHHHHHhcCCcEEEEecChhHHHHHHHHHHHHcC-CCceeecChHHHhhCCcCccCCCCEEEEEeCCCCcH-HHH
Confidence 3456777777776 4899999999999999999999985 677777777777777777789999999999999986 799
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCC
Q psy1915 321 NALLQVIARDGRPIVICEKGDTETQALATKTLEVPHT 357 (361)
Q Consensus 321 ~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~ 357 (361)
+.++.++++|.++|+||+.+++++++++|+++.+|..
T Consensus 107 ~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~~~~~ 143 (321)
T PRK11543 107 LIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISVE 143 (321)
T ss_pred HHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcCCc
Confidence 9999999999999999999999999999999988754
No 65
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=99.15 E-value=4.4e-10 Score=92.28 Aligned_cols=102 Identities=19% Similarity=0.187 Sum_probs=88.7
Q ss_pred eEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEE
Q psy1915 256 SMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIV 335 (361)
Q Consensus 256 ~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~ 335 (361)
+++++|.|.++.+|++.+.++.. .+.++..+...++.......+++++++|+++.+|++. ++.++++.++++|.++|+
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~-~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSS-TGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETD-ELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhc-CCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCH-HHHHHHHHHHHCCCeEEE
Confidence 68999999999999999999965 4778877776666555556678999999999999986 799999999999999999
Q ss_pred EecCCCchhhhcccceEEcCCCCC
Q psy1915 336 ICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 336 I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
||+.+++++++.+|+++.+|...+
T Consensus 80 iT~~~~s~la~~ad~~l~~~~~~~ 103 (128)
T cd05014 80 ITGNPNSTLAKLSDVVLDLPVEEE 103 (128)
T ss_pred EeCCCCCchhhhCCEEEECCCCcc
Confidence 999999999999999999985443
No 66
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.
Probab=99.14 E-value=8.2e-10 Score=107.17 Aligned_cols=115 Identities=11% Similarity=0.080 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhc--CCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCcc--CCCcEEEEEcCCccHH
Q psy1915 242 SEVQQLAKEMYE--QKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALID--NSMPVIMILTRDPVYV 317 (361)
Q Consensus 242 ~~~~~~a~~l~~--~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~--~~~~vi~i~~~g~~~~ 317 (361)
+.++++.+.+.. .++++|+|+|.+|..++-++..|++.+++++..+.+.||.|.+....+ +++++|.++.+|+|.
T Consensus 28 ~~~~~~~~~~~~~~~~~i~~~g~GsS~~a~~~~~~~~~~~~~i~v~~~~~~e~~~~~~~~~~~~~~~lvi~iSqSGeT~- 106 (372)
T TIGR02815 28 PALNAFLEPLLARENLRIVLTGAGTSAFIGDALAPWLASHTGLNVSAVPTTDLVSNPRQYLDPTRPTLLVSFARSGNSP- 106 (372)
T ss_pred HHHHHHHHHHHhCCCCEEEEEechHHHHHHHHHHHHHHHhcCCCEEEEeCcccccccccccCCCCCeEEEEEeCCcCcH-
Confidence 456666666543 578999999999999999999999999999999999998876655443 568999999999996
Q ss_pred HHHHHHHHHHHc--CCcEEEEecCCCchhhhccc-----ceEEcCCC
Q psy1915 318 KCMNALLQVIAR--DGRPIVICEKGDTETQALAT-----KTLEVPHT 357 (361)
Q Consensus 318 ~~~~~~~~~~~~--g~~~v~I~~~~~~~~~~~~d-----~~i~~p~~ 357 (361)
+++++++.++++ |.++++||+..++++++.+| ..+.+|..
T Consensus 107 etv~a~~~ak~~~~g~~~i~it~~~~s~la~~ad~~~~~~~i~~~ag 153 (372)
T TIGR02815 107 ESVAAVELADQLLPECYHLVLTCNEEGALYRNAINRSNAFALLMPAE 153 (372)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHhhcccCceeEEEccCC
Confidence 799999999998 78999999999999999999 77877755
No 67
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.10 E-value=1.9e-09 Score=103.01 Aligned_cols=114 Identities=18% Similarity=0.116 Sum_probs=98.4
Q ss_pred HHHHHHHHHhcC-CeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHHH
Q psy1915 243 EVQQLAKEMYEQ-KSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMN 321 (361)
Q Consensus 243 ~~~~~a~~l~~~-~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~ 321 (361)
.++++++.+.++ ++++++|.|.++.+|.+++.+|.. .+.++..+...++.|.....+++++.+|+++.+|++. .+++
T Consensus 35 ~l~~~~~~l~~a~~~I~i~G~G~S~~~a~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~-~~~~ 112 (326)
T PRK10892 35 DFTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFAS-TGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESS-EILA 112 (326)
T ss_pred HHHHHHHHHHhcCCeEEEEeCcHhHHHHHHHHHHHhc-CCceeEEeChHHhhccccccCCCCCEEEEEeCCCCCH-HHHH
Confidence 467788888777 699999999999999999999997 4677777666666665556678899999999999986 7999
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCC
Q psy1915 322 ALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTV 358 (361)
Q Consensus 322 ~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~ 358 (361)
+++.++++|.++|+||+.+++++++.+|+++.++...
T Consensus 113 ~~~~ak~~g~~vi~iT~~~~s~la~~ad~~l~~~~~~ 149 (326)
T PRK10892 113 LIPVLKRLHVPLICITGRPESSMARAADIHLCVKVPK 149 (326)
T ss_pred HHHHHHHCCCcEEEEECCCCCcccccCCEEEEeCCCc
Confidence 9999999999999999999999999999999988544
No 68
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=99.08 E-value=8.3e-11 Score=98.18 Aligned_cols=87 Identities=22% Similarity=0.253 Sum_probs=51.9
Q ss_pred CCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEecc---------c----cc---ccCCCCCCCCEEEEEc
Q psy1915 75 GSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELAS---------D----FL---DRNTPVFRDDVCFFIS 138 (361)
Q Consensus 75 g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~---------e----~~---~~~~~~~~~dlvI~iS 138 (361)
|+++++|.|.|+.++++....+.. .+-.+....+.....+. + |. .......++|++|+||
T Consensus 36 g~i~~~G~G~S~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gDvli~iS 111 (138)
T PF13580_consen 36 GRIFVCGNGHSAAIASHFAADLGG----LFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYDIRPGDVLIVIS 111 (138)
T ss_dssp --EEEEESTHHHHHHHHHHHHHHC----HSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT--TT-EEEEEE
T ss_pred CEEEEEcCchhhhHHHHHHHHHhc----CcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcCCCCCCEEEEEC
Confidence 789999999999887654433220 00000011233322111 1 10 0113478999999999
Q ss_pred CCCCcHHHHHHHHHHHHcCCeEEEEEc
Q psy1915 139 QSGETADSLMALRYCKARGALIVGVTN 165 (361)
Q Consensus 139 ~SG~t~e~~~a~~~ak~~g~~~i~IT~ 165 (361)
.||+|+.++++++.||++|++||+||+
T Consensus 112 ~SG~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 112 NSGNSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp SSS-SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 999999999999999999999999996
No 69
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=99.07 E-value=3e-09 Score=92.62 Aligned_cols=114 Identities=19% Similarity=0.153 Sum_probs=90.0
Q ss_pred HHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhh-----CcceEEEe--cCCccc--cC-----------ccCccCC
Q psy1915 244 VQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELT-----YMHSEGIM--AGELKH--GP-----------LALIDNS 303 (361)
Q Consensus 244 ~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~-----~~~a~~~~--~~E~~H--gp-----------~~~i~~~ 303 (361)
++.+++.+.+.++++++|.|.++.+|.+++.+|.-.. ++++..+. ..++.+ +. ...++++
T Consensus 23 ~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (177)
T cd05006 23 AQLLAEALLNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQVEALGQPG 102 (177)
T ss_pred HHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHHHHHHhCCCC
Confidence 3455666666899999999999999999999887432 56666554 122211 10 1246889
Q ss_pred CcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCC
Q psy1915 304 MPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTV 358 (361)
Q Consensus 304 ~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~ 358 (361)
+++|+++.+|++. .++++++.++++|+++|+||+.+++++.+.+|+++.+|...
T Consensus 103 Dv~I~iS~SG~t~-~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~~ 156 (177)
T cd05006 103 DVLIGISTSGNSP-NVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVPSDD 156 (177)
T ss_pred CEEEEEeCCCCCH-HHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCCCC
Confidence 9999999999986 79999999999999999999999999999999999998654
No 70
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=99.06 E-value=3e-09 Score=100.03 Aligned_cols=115 Identities=14% Similarity=0.119 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHHH
Q psy1915 242 SEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMN 321 (361)
Q Consensus 242 ~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~ 321 (361)
+.++++++.+.+++++++.|.|.+..+|.+.+.+|... ++++..+...++.......+++++++|+++.+|.+. .+.+
T Consensus 128 ~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~-g~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS~sG~t~-~~~~ 205 (292)
T PRK11337 128 DEFHRAARFFYQARQRDLYGAGGSAAIARDVQHKFLRI-GVRCQAYDDAHIMLMSAALLQEGDVVLVVSHSGRTS-DVIE 205 (292)
T ss_pred HHHHHHHHHHHcCCeEEEEEecHHHHHHHHHHHHHhhC-CCeEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCH-HHHH
Confidence 56788899999999999999999999999999999975 567766644433333344578999999999999986 6889
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCC
Q psy1915 322 ALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTV 358 (361)
Q Consensus 322 ~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~ 358 (361)
+++.++++|.++|+||+.+++++++.+|+++.+|...
T Consensus 206 ~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~~~~ 242 (292)
T PRK11337 206 AVELAKKNGAKIICITNSYHSPIAKLADYVICSTAQG 242 (292)
T ss_pred HHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEcCCCC
Confidence 9999999999999999999999999999999998654
No 71
>PRK15482 transcriptional regulator MurR; Provisional
Probab=99.05 E-value=4.4e-09 Score=98.59 Aligned_cols=116 Identities=11% Similarity=0.045 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHHH
Q psy1915 242 SEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMN 321 (361)
Q Consensus 242 ~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~ 321 (361)
+.+++.++.+.++++++++|.|.++.+|.+...+|... +.++..+...+..--....+++++++|+|+.+|.+. ++++
T Consensus 123 ~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~-g~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sg~t~-~~~~ 200 (285)
T PRK15482 123 ARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKI-GYRVACEADTHVQATVSQALKKGDVQIAISYSGSKK-EIVL 200 (285)
T ss_pred HHHHHHHHHHHhCCeeEEEEeChhHHHHHHHHHHHHhC-CCeeEEeccHhHHHHHHhcCCCCCEEEEEeCCCCCH-HHHH
Confidence 45788899999999999999999999999999999976 445554432211101123467899999999999986 7889
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 322 ALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 322 ~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
+++.++++|+++|+||+.+++++++.+|+++.+|....
T Consensus 201 ~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~~ 238 (285)
T PRK15482 201 CAEAARKQGATVIAITSLADSPLRRLAHFTLDTVSGET 238 (285)
T ss_pred HHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcCCCcc
Confidence 99999999999999999999999999999999987543
No 72
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=99.02 E-value=9.9e-09 Score=90.45 Aligned_cols=114 Identities=16% Similarity=0.158 Sum_probs=91.1
Q ss_pred HHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHH-----HhhCcceEEEecCCcccc----C-----------ccCccCC
Q psy1915 244 VQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIK-----ELTYMHSEGIMAGELKHG----P-----------LALIDNS 303 (361)
Q Consensus 244 ~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~-----E~~~~~a~~~~~~E~~Hg----p-----------~~~i~~~ 303 (361)
++.+++.+.+.+++++.|.|.+.++|+.++.+|. +...+|+......-..-. + -...+++
T Consensus 31 ~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql~~~~~~g 110 (196)
T PRK10886 31 AMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAG 110 (196)
T ss_pred HHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHHHHcCCCC
Confidence 4677788888999999999999999999999885 345666665532211110 0 1235788
Q ss_pred CcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCCchhhhc---ccceEEcCCCC
Q psy1915 304 MPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDTETQAL---ATKTLEVPHTV 358 (361)
Q Consensus 304 ~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~---~d~~i~~p~~~ 358 (361)
+++|+++.+|++. .++++++.+|++|.++|+||+.+++++.++ +|..+.+|..+
T Consensus 111 Dvli~iS~SG~s~-~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ip~~~ 167 (196)
T PRK10886 111 DVLLAISTRGNSR-DIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHR 167 (196)
T ss_pred CEEEEEeCCCCCH-HHHHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEEEcCCCc
Confidence 9999999999986 789999999999999999999999999886 69999999754
No 73
>PRK13938 phosphoheptose isomerase; Provisional
Probab=99.02 E-value=7.8e-09 Score=91.13 Aligned_cols=114 Identities=12% Similarity=0.064 Sum_probs=92.5
Q ss_pred HHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHH-----HhhCcceEEEecCCcccc----------------CccCcc
Q psy1915 243 EVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIK-----ELTYMHSEGIMAGELKHG----------------PLALID 301 (361)
Q Consensus 243 ~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~-----E~~~~~a~~~~~~E~~Hg----------------p~~~i~ 301 (361)
.++.+.+.+.+..++++.|.|.+..+|+..+.+|. +..+++..+...... |. .....+
T Consensus 34 ~a~~~~~~l~~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~~~-~~~a~~nd~~~~~~~~~~~~~~~~ 112 (196)
T PRK13938 34 IGDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANSS-HLTAVANDYDYDTVFARALEGSAR 112 (196)
T ss_pred HHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCChH-HHHHhhccccHHHHHHHHHHhcCC
Confidence 35667777888999999999999999999999996 333455555544431 21 123467
Q ss_pred CCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCC
Q psy1915 302 NSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTV 358 (361)
Q Consensus 302 ~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~ 358 (361)
+++++|+++.+|++. .++++++.++++|.++|+||+.+++++.+++|+++.+|..+
T Consensus 113 ~~DllI~iS~SG~t~-~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v~~~e 168 (196)
T PRK13938 113 PGDTLFAISTSGNSM-SVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINVPSRD 168 (196)
T ss_pred CCCEEEEEcCCCCCH-HHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEeCCCc
Confidence 899999999999986 79999999999999999999999999999999999998743
No 74
>PRK13937 phosphoheptose isomerase; Provisional
Probab=98.99 E-value=1.1e-08 Score=89.90 Aligned_cols=116 Identities=17% Similarity=0.123 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHH-----HhhCcceEEEecC---------Ccccc------CccCcc
Q psy1915 242 SEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIK-----ELTYMHSEGIMAG---------ELKHG------PLALID 301 (361)
Q Consensus 242 ~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~-----E~~~~~a~~~~~~---------E~~Hg------p~~~i~ 301 (361)
+.++++++.+.+.++++++|.|.++.+|...+..+. ...++++..+... ++.-. ....++
T Consensus 26 ~aa~~i~~~l~~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (188)
T PRK13937 26 KVAEALIEALANGGKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIGNDYGFERVFSRQVEALGR 105 (188)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHhccCCHHHHHHHHHHhhCC
Confidence 346788888999999999999999998876543332 2235555544210 11000 111357
Q ss_pred CCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCC
Q psy1915 302 NSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTV 358 (361)
Q Consensus 302 ~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~ 358 (361)
+++++|+++.+|++. .++++++.++++|.++|+||+.+++++.+.+|+++.+|...
T Consensus 106 ~~Dl~i~iS~sG~t~-~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~~~~e 161 (188)
T PRK13937 106 PGDVLIGISTSGNSP-NVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIVPSDD 161 (188)
T ss_pred CCCEEEEEeCCCCcH-HHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCCCC
Confidence 889999999999986 79999999999999999999999999999999999999754
No 75
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=98.98 E-value=1.2e-08 Score=89.95 Aligned_cols=112 Identities=18% Similarity=0.135 Sum_probs=87.1
Q ss_pred HHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHH-----HhhCcceEEEecCCccccC----------------ccCccC
Q psy1915 244 VQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIK-----ELTYMHSEGIMAGELKHGP----------------LALIDN 302 (361)
Q Consensus 244 ~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~-----E~~~~~a~~~~~~E~~Hgp----------------~~~i~~ 302 (361)
++.+.+.+.+.+++++.|.|.++.+|+..+..+. ....+++... .+..|.. ....++
T Consensus 34 ~~~i~~al~~~~rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~--~d~~~~~~~~~d~~~~~~~~~~~~~~~~~ 111 (192)
T PRK00414 34 AVLIADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAI--SDVSHLSCVSNDFGYDYVFSRYVEAVGRE 111 (192)
T ss_pred HHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEec--CcHHHHhhhhccCCHHHHHHHHHHHhCCC
Confidence 4555666666799999999999999999885552 1124555444 3332321 123478
Q ss_pred CCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCC
Q psy1915 303 SMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTV 358 (361)
Q Consensus 303 ~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~ 358 (361)
++++|+++.+|++. .++++++.++++|.++|+||+.+++++.+.+|.++.+|...
T Consensus 112 ~Dv~I~iS~SG~t~-~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~~~~~ 166 (192)
T PRK00414 112 GDVLLGISTSGNSG-NIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRVPHFG 166 (192)
T ss_pred CCEEEEEeCCCCCH-HHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCCCC
Confidence 89999999999986 78999999999999999999999999999999999999743
No 76
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=98.98 E-value=7.3e-09 Score=103.71 Aligned_cols=136 Identities=17% Similarity=0.166 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHcc-cHHHHHH---HHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCcc
Q psy1915 223 IIKGLKVIHEQIREVLQM-DSEVQQL---AKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLA 298 (361)
Q Consensus 223 ~~~~l~~l~~~~~~~l~~-~~~~~~~---a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~ 298 (361)
+++.+.+-|+.++..++. .+..... ...+.+.++++++|||.+|..++-++..|.+.+.+|+....+.||+--...
T Consensus 248 MlKEI~EQP~~i~~tl~~~~~~~~~~~~~~~~~~~~~rI~IvAcGTSYhAglv~ky~~E~la~ipv~Ve~aSEfry~~~~ 327 (597)
T COG0449 248 MLKEIYEQPEALRNTLQGRLDELVQNELDLDILREVDRIIIVACGTSYHAGLVAKYFFERLAKIPVEVEEASEFRYREPA 327 (597)
T ss_pred HHHHHHhhHHHHHHHHHhhhhhhhhhhhchhhhcccceEEEEECcHHHHHHHHHHHHHHHHhCCCeEEEeechhhhhccC
Confidence 455667778888877762 1111111 124568899999999999999999999999999999999999999865443
Q ss_pred CccCCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCCC
Q psy1915 299 LIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVDC 360 (361)
Q Consensus 299 ~i~~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~~ 360 (361)
+.+++++|+++++|+|. +++.+++.+|++|++++.|++...|.+.+.+|+++.+..+.|+
T Consensus 328 -~~~~~L~I~ISQSGETa-DTl~ALr~ak~~G~~tlaItNv~gSti~Resd~~l~~~AGpEi 387 (597)
T COG0449 328 -LNPNTLVIAISQSGETA-DTLAALRLAKEQGAKTLAITNVPGSTIARESDHTLLIRAGPEI 387 (597)
T ss_pred -CCCCcEEEEEccCcccH-HHHHHHHHHHHcCCCEEEEEecCCChhhcccceEEEeccCCce
Confidence 55679999999999997 8999999999999999999999999999999999999988775
No 77
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=98.98 E-value=3e-09 Score=90.88 Aligned_cols=92 Identities=20% Similarity=0.204 Sum_probs=67.9
Q ss_pred CCcEEEEeccccccccccchhhhhHHHHHHHHHhc--CCceEEEec--cccc-ccCC-CCCCCCEEEEEcCCCCcHHHHH
Q psy1915 75 GSPLLVGIKTKTRLATDHIPILYGKATRQLLEELT--ELPVMVELA--SDFL-DRNT-PVFRDDVCFFISQSGETADSLM 148 (361)
Q Consensus 75 g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~--g~~~~~~~~--~e~~-~~~~-~~~~~dlvI~iS~SG~t~e~~~ 148 (361)
.+++++|+|+|..-+. .+.+++.+.. +.++.+... .++. .... ...++|++|++|.||+|+|++.
T Consensus 21 ~~iv~~GiGGS~lg~~---------~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~~tlvi~iSkSG~T~Et~~ 91 (158)
T cd05015 21 TDVVVIGIGGSDLGPR---------AVYEALKPYFKGGLRLHFVSNVDPDDLAELLKKLDPETTLFIVISKSGTTLETLA 91 (158)
T ss_pred CEEEEEecCccHHHHH---------HHHHHHHhhccCCceEEEEeCCCHHHHHHHHHhCCcccEEEEEEECCcCCHHHHH
Confidence 5789999999986332 2244445443 666555554 3331 1222 3358999999999999999999
Q ss_pred HHHHHHH---------cCCeEEEEEcCCCCccccccC
Q psy1915 149 ALRYCKA---------RGALIVGVTNTVGSSISRESH 176 (361)
Q Consensus 149 a~~~ak~---------~g~~~i~IT~~~~S~la~~ad 176 (361)
+++.+++ .+.++|+||+ ++|++.+.++
T Consensus 92 ~~~~a~~~l~~~~~~~~~~~~vaiT~-~~s~l~~~a~ 127 (158)
T cd05015 92 NARLAREWLEEAGGDDLAKHFVAITD-NGSGLLKKAG 127 (158)
T ss_pred HHHHHHHHHHHhccccccceEEEEcC-CChHHHHHcC
Confidence 9999999 8999999999 7899988666
No 78
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=98.97 E-value=8.1e-09 Score=96.37 Aligned_cols=110 Identities=11% Similarity=0.085 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCcccc---CccCccCCCcEEEEEcCCccHHH
Q psy1915 242 SEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHG---PLALIDNSMPVIMILTRDPVYVK 318 (361)
Q Consensus 242 ~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hg---p~~~i~~~~~vi~i~~~g~~~~~ 318 (361)
+.+++.++.+.++++++++|.|.++.+|.+...+|... +.++... .+. |. ....+++++++|+|+.+|.+. +
T Consensus 116 ~~l~~~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l~~~-g~~~~~~--~d~-~~~~~~~~~~~~~Dv~I~iS~sg~~~-~ 190 (278)
T PRK11557 116 EKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKI-GINAVAE--RDM-HALLATVQALSPDDLLLAISYSGERR-E 190 (278)
T ss_pred HHHHHHHHHHhcCCeEEEEecChhHHHHHHHHHHHhhC-CCeEEEc--CCh-HHHHHHHHhCCCCCEEEEEcCCCCCH-H
Confidence 56788899999999999999999999999999999976 4455433 332 32 122467899999999999886 7
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCC
Q psy1915 319 CMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPH 356 (361)
Q Consensus 319 ~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~ 356 (361)
+.++++.++++|.++|+||+..++++++++|+++..+.
T Consensus 191 ~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~~~ 228 (278)
T PRK11557 191 LNLAADEALRVGAKVLAITGFTPNALQQRASHCLYTIA 228 (278)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEeCC
Confidence 88999999999999999999999999999999998764
No 79
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=98.96 E-value=8.1e-09 Score=96.62 Aligned_cols=112 Identities=12% Similarity=0.043 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHHH
Q psy1915 242 SEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMN 321 (361)
Q Consensus 242 ~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~ 321 (361)
+.++++++.+.++++++++|.|.++.+|.+...++... ++++..+....+.......+++++++|+++.+|.+. .+++
T Consensus 116 ~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~-~~~~ 193 (284)
T PRK11302 116 SAINRAVDLLTQAKKISFFGLGASAAVAHDAQNKFFRF-NVPVVYFDDIVMQRMSCMNSSDGDVVVLISHTGRTK-SLVE 193 (284)
T ss_pred HHHHHHHHHHHcCCeEEEEEcchHHHHHHHHHHHHHhc-CCceEecCCHHHHHHHHHhCCCCCEEEEEeCCCCCH-HHHH
Confidence 45788899999999999999999999999999999874 566665432211111223457899999999999986 7899
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhhcccceEEcCC
Q psy1915 322 ALLQVIARDGRPIVICEKGDTETQALATKTLEVPH 356 (361)
Q Consensus 322 ~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~ 356 (361)
+++.++++|.++|+||+ .++++.+++|+++.+|.
T Consensus 194 ~~~~ak~~g~~vI~IT~-~~s~l~~~ad~~l~~~~ 227 (284)
T PRK11302 194 LAQLARENGATVIAITS-AGSPLAREATLALTLDV 227 (284)
T ss_pred HHHHHHHcCCeEEEECC-CCChhHHhCCEEEecCC
Confidence 99999999999999998 67899999999999874
No 80
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=98.96 E-value=7e-09 Score=88.90 Aligned_cols=56 Identities=21% Similarity=0.263 Sum_probs=50.2
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCC-----------ccccccCeeEEc
Q psy1915 126 TPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGS-----------SISRESHCGIHI 181 (361)
Q Consensus 126 ~~~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S-----------~la~~ad~~l~~ 181 (361)
..++++|++|++|.||.++--+++++++|++||++|++|+-.-| .|.+.+|++|.-
T Consensus 100 ~~i~~~DVliviSnSGrNpvpie~A~~~rekGa~vI~vTSl~ySq~~~SRh~SGK~Ly~~aDvVlDN 166 (243)
T COG4821 100 LQIRPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVTSLDYSQSQASRHKSGKLLYEFADVVLDN 166 (243)
T ss_pred hcCCCCCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEEehhhhhhhchhcccchhHHhhhcceeeeC
Confidence 45789999999999999999999999999999999999987766 577788988754
No 81
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=98.93 E-value=2.7e-09 Score=90.70 Aligned_cols=113 Identities=17% Similarity=0.140 Sum_probs=88.6
Q ss_pred HHHHHHHhcCCeEEEEeccCCHHHHHHHH------HHHHHhhCcceEEEe-cC--------Cccc-cCc-----cCccCC
Q psy1915 245 QQLAKEMYEQKSMLLMGRGYNYATCMEGA------LKIKELTYMHSEGIM-AG--------ELKH-GPL-----ALIDNS 303 (361)
Q Consensus 245 ~~~a~~l~~~~~i~~iG~G~~~~~A~e~a------lkl~E~~~~~a~~~~-~~--------E~~H-gp~-----~~i~~~ 303 (361)
+++++.+.+.+++++.|.|.++.+|+.++ .|+... ++++.... .. ++.. ..+ ...+++
T Consensus 2 ~~~~~~l~~a~rI~~~G~G~S~~~A~~~a~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 80 (154)
T TIGR00441 2 VLLADSFKAGGKVLICGNGGSACDAQHFAAELTGRYRENRP-GLPAIALSADVSHLTCVSNDYGYEDVFSRQVEALGQKG 80 (154)
T ss_pred hHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhhcccccCCC-CceEEecCCcHHHHHHhhccCCHHHHHHHHHHHhCCCC
Confidence 45678888999999999999999999985 344444 56665543 11 1000 001 234788
Q ss_pred CcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 304 MPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 304 ~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
+.+|+++.+|++. .++++++.++++|.++|+||+.+++++.+.+|.++.+|..+.
T Consensus 81 D~~i~iS~sG~t~-~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~~~~~~~ 135 (154)
T TIGR00441 81 DVLLGISTSGNSK-NVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELRVPHFYT 135 (154)
T ss_pred CEEEEEcCCCCCH-HHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCCCCc
Confidence 9999999999986 789999999999999999999999999999999999998654
No 82
>PRK13936 phosphoheptose isomerase; Provisional
Probab=98.90 E-value=3e-08 Score=87.83 Aligned_cols=116 Identities=13% Similarity=0.131 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHH-----HhhCcceEEEe--------cCCccccC-------ccCcc
Q psy1915 242 SEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIK-----ELTYMHSEGIM--------AGELKHGP-------LALID 301 (361)
Q Consensus 242 ~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~-----E~~~~~a~~~~--------~~E~~Hgp-------~~~i~ 301 (361)
+.++.+++.+.+.+++++.|.|.+..+|...+.+|. +...+++.... ..+-.|-. -...+
T Consensus 31 ~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~ 110 (197)
T PRK13936 31 QAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFERERPSLPAIALTTDTSTLTAIANDYSYNEVFSKQVRALGQ 110 (197)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEecCCcHHHHHHHhhcCCHHHHHHHHHHHhCC
Confidence 345678888889999999999999999999999987 23345554331 00001110 12236
Q ss_pred CCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCCchhhhc---ccceEEcCCCC
Q psy1915 302 NSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDTETQAL---ATKTLEVPHTV 358 (361)
Q Consensus 302 ~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~---~d~~i~~p~~~ 358 (361)
+++++|+++.+|++. .+++.++.++++|.++|+||+.+++++.++ +|+++.+|...
T Consensus 111 ~~Dv~i~iS~sG~t~-~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~~~~ 169 (197)
T PRK13936 111 PGDVLLAISTSGNSA-NVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVPAER 169 (197)
T ss_pred CCCEEEEEeCCCCcH-HHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeCCCc
Confidence 899999999999986 789999999999999999999998888774 89999999765
No 83
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=98.76 E-value=2.2e-08 Score=76.11 Aligned_cols=80 Identities=25% Similarity=0.224 Sum_probs=73.7
Q ss_pred EEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccC-ccCccCCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEE
Q psy1915 257 MLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGP-LALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIV 335 (361)
Q Consensus 257 i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp-~~~i~~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~ 335 (361)
++++|+|.++.+|.++..++.+..+.++......++.|++ ...+++++++|+++.+|.+. ++.+.++.++++|.++|+
T Consensus 1 i~i~g~G~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t~-~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 1 IFVIGIGGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTE-ELLAALEIAKELGIPVIA 79 (87)
T ss_pred CEEEEcCHHHHHHHHHHHHHhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCCH-HHHHHHHHHHHcCCeEEE
Confidence 4789999999999999999999878999999999999998 77788999999999999885 788999999999999999
Q ss_pred Ee
Q psy1915 336 IC 337 (361)
Q Consensus 336 I~ 337 (361)
|+
T Consensus 80 it 81 (87)
T cd04795 80 IT 81 (87)
T ss_pred Ee
Confidence 98
No 84
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.73 E-value=7.8e-08 Score=89.15 Aligned_cols=100 Identities=14% Similarity=0.122 Sum_probs=86.6
Q ss_pred eEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEE
Q psy1915 256 SMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIV 335 (361)
Q Consensus 256 ~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~ 335 (361)
++++.|.|.++.+|.+++.||..+ +.++..++..+..+.....+++++++|+++.+|++. +++++++.++++|.++|+
T Consensus 2 rI~i~G~G~S~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~-~~~~~~~~a~~~g~~ii~ 79 (268)
T TIGR00393 2 KLVIVGIGKSGLIGKKIVATFAST-GTPSFFLHPTEAMHGDLGMVEPNDVVLMISYSGESL-ELLNLIPHLKRLSHKIIA 79 (268)
T ss_pred cEEEEecChHHHHHHHHHHHHHhc-CCceEEeCHhHHhhcccCCCCCCCEEEEEeCCCCCH-HHHHHHHHHHHcCCcEEE
Confidence 689999999999999999999985 567777766666554445578999999999999986 789999999999999999
Q ss_pred EecCCCchhhhcccceEEcCCC
Q psy1915 336 ICEKGDTETQALATKTLEVPHT 357 (361)
Q Consensus 336 I~~~~~~~~~~~~d~~i~~p~~ 357 (361)
||+..++++.+++|..+.++..
T Consensus 80 iT~~~~s~l~~~~d~~l~~~~~ 101 (268)
T TIGR00393 80 FTGSPNSSLARAADYVLDIKVE 101 (268)
T ss_pred EECCCCCcccccCCEEEEcCCC
Confidence 9999999999999999998754
No 85
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=98.72 E-value=1.3e-07 Score=76.67 Aligned_cols=96 Identities=15% Similarity=0.148 Sum_probs=78.7
Q ss_pred eEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEE
Q psy1915 256 SMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIV 335 (361)
Q Consensus 256 ~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~ 335 (361)
+++++|.|.++.+|.....+++.....++......++. ..+++++++|+++.+|++. ++++.++.++++|.++|+
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~dl~I~iS~SG~t~-e~i~~~~~a~~~g~~iI~ 75 (119)
T cd05017 1 NIVILGMGGSGIGGDLLESLLLDEAKIPVYVVKDYTLP----AFVDRKTLVIAVSYSGNTE-ETLSAVEQAKERGAKIVA 75 (119)
T ss_pred CEEEEEcCHHHHHHHHHHHHHHhccCCCEEEecCccCc----CCCCCCCEEEEEECCCCCH-HHHHHHHHHHHCCCEEEE
Confidence 47899999999999999988888667777766554432 1467889999999999986 789999999999999999
Q ss_pred EecCCCchhhhccc----ceEEcCCCC
Q psy1915 336 ICEKGDTETQALAT----KTLEVPHTV 358 (361)
Q Consensus 336 I~~~~~~~~~~~~d----~~i~~p~~~ 358 (361)
||+.+ ++.+++| +.+.+|...
T Consensus 76 IT~~~--~l~~~~~~~~~~~~~~p~~~ 100 (119)
T cd05017 76 ITSGG--KLLEMAREHGVPVIIIPKGL 100 (119)
T ss_pred EeCCc--hHHHHHHHcCCcEEECCCCC
Confidence 99754 5777777 778888765
No 86
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=98.71 E-value=1.5e-07 Score=97.73 Aligned_cols=113 Identities=14% Similarity=0.136 Sum_probs=93.6
Q ss_pred cHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHH
Q psy1915 241 DSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCM 320 (361)
Q Consensus 241 ~~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~ 320 (361)
.+.++++++.+.++++++++|.|.++.+|.+...+|... ++++..+...++..-....+++++++|+++.+|++. +++
T Consensus 455 ~~~l~~aa~~L~~a~rI~i~G~G~S~~~A~~~~~~l~~l-g~~~~~~~d~~~~~~~~~~l~~~DvvI~iS~sG~t~-e~i 532 (638)
T PRK14101 455 FEHVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRF-GIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAP-ELL 532 (638)
T ss_pred HHHHHHHHHHHhcCCEEEEEEccHHHHHHHHHHHHHhcC-CceEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCH-HHH
Confidence 456888999999999999999999999999999999886 566665443333222234568899999999999986 688
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCC
Q psy1915 321 NALLQVIARDGRPIVICEKGDTETQALATKTLEVPH 356 (361)
Q Consensus 321 ~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~ 356 (361)
+.++.++++|.++|+||+. ++++++++|+++.++.
T Consensus 533 ~~~~~Ak~~Ga~vIaIT~~-~spLa~~aD~~L~~~~ 567 (638)
T PRK14101 533 RVLDVAMQAGAKVIAITSS-NTPLAKRATVALETDH 567 (638)
T ss_pred HHHHHHHHCCCeEEEEcCC-CChhHhhCCEEEEcCC
Confidence 9999999999999999995 7899999999998765
No 87
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=98.64 E-value=5.4e-07 Score=84.82 Aligned_cols=116 Identities=15% Similarity=0.064 Sum_probs=85.0
Q ss_pred HHHHHHHHHhcCCeEEEEeccCCHHHH-HHHHHHHHHhhCcc--eEEEe---------cCCcccc-------C--ccCcc
Q psy1915 243 EVQQLAKEMYEQKSMLLMGRGYNYATC-MEGALKIKELTYMH--SEGIM---------AGELKHG-------P--LALID 301 (361)
Q Consensus 243 ~~~~~a~~l~~~~~i~~iG~G~~~~~A-~e~alkl~E~~~~~--a~~~~---------~~E~~Hg-------p--~~~i~ 301 (361)
.++.+++.+.+..++|++|.|.+..+| +++..++-....-+ ..++. +-|.... . ...++
T Consensus 51 av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e~~ed~~~~~~~~l~~~~l~ 130 (299)
T PRK05441 51 AVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGAEDDAELGAADLKAINLT 130 (299)
T ss_pred HHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhcccccCChHHHHHHHHHhcCCC
Confidence 357788888899999999999999888 55554443332210 01110 0111111 1 12257
Q ss_pred CCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 302 NSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 302 ~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
+++++|+++.+|++. .++.+++.++++|.++|+|++.+++++.+.+|+.|.+|...|
T Consensus 131 ~~DvvI~IS~SG~T~-~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~aD~~I~~~~g~E 187 (299)
T PRK05441 131 AKDVVVGIAASGRTP-YVIGALEYARERGALTIGISCNPGSPLSKEADIAIEVVVGPE 187 (299)
T ss_pred CCCEEEEEeCCCCCH-HHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEcCCCCc
Confidence 889999999999986 799999999999999999999999999999999999986554
No 88
>PRK02947 hypothetical protein; Provisional
Probab=98.63 E-value=3.7e-07 Score=83.63 Aligned_cols=112 Identities=13% Similarity=0.041 Sum_probs=83.7
Q ss_pred HHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhC-----cceEEE-------ecCCcccc------CccCccCCCc
Q psy1915 244 VQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTY-----MHSEGI-------MAGELKHG------PLALIDNSMP 305 (361)
Q Consensus 244 ~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~-----~~a~~~-------~~~E~~Hg------p~~~i~~~~~ 305 (361)
++.+++.+.+.+++++.|.|.+..+|.++..++..+.. .++... ..-|..+| ....++++++
T Consensus 30 a~lla~~i~~a~~I~i~G~G~S~~vA~~~~~rlg~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv 109 (246)
T PRK02947 30 ADLIADSIRNGGLIYVFGTGHSHILAEEVFYRAGGLAPVNPILEPSLMLHEGAVASSYLERVEGYAKAILDRYDIRPGDV 109 (246)
T ss_pred HHHHHHHHHCCCEEEEEcCcHHHHHHHHhccccccCcccCCCCCHHHhccccHHHHHHhhhcccHHHHHHHHcCCCCCCE
Confidence 46677788889999999999999999998888732211 111100 00111111 1234578999
Q ss_pred EEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCC-----------chhhhcccceEEcCC
Q psy1915 306 VIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGD-----------TETQALATKTLEVPH 356 (361)
Q Consensus 306 vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~-----------~~~~~~~d~~i~~p~ 356 (361)
+|+|+.+|++. .++++++.++++|.++|+||+.++ +++.+.+|.++.++.
T Consensus 110 ~i~iS~sG~t~-~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~~~~ 170 (246)
T PRK02947 110 LIVVSNSGRNP-VPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVLDNGA 170 (246)
T ss_pred EEEEeCCCCCH-HHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEEEcCC
Confidence 99999999986 799999999999999999999874 689999999998764
No 89
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=98.59 E-value=4.8e-07 Score=83.39 Aligned_cols=116 Identities=16% Similarity=0.105 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcCCeEEEEeccCCHHHHH-HHHHHHHHhhCcc--eEEEecC---------Ccccc-------C--ccCcc
Q psy1915 243 EVQQLAKEMYEQKSMLLMGRGYNYATCM-EGALKIKELTYMH--SEGIMAG---------ELKHG-------P--LALID 301 (361)
Q Consensus 243 ~~~~~a~~l~~~~~i~~iG~G~~~~~A~-e~alkl~E~~~~~--a~~~~~~---------E~~Hg-------p--~~~i~ 301 (361)
.++.+++.+.+..+++++|.|.+..+|. .+..++-....-+ ..++-.+ |..++ . ...++
T Consensus 38 av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~a~~l~ 117 (257)
T cd05007 38 AVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAINLT 117 (257)
T ss_pred HHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHHHHHHHHHHcCCC
Confidence 3567888888999999999999988774 3444433322200 1111110 11111 0 12246
Q ss_pred CCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 302 NSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 302 ~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
+++++|.++.+|++. .++.+++.++++|.++|+|++.+++++.+.+|++|.++...|
T Consensus 118 ~~DvvI~IS~SG~T~-~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~aD~~I~~~~g~E 174 (257)
T cd05007 118 ERDVVIGIAASGRTP-YVLGALRYARARGALTIGIACNPGSPLLQLADIAIALITGPE 174 (257)
T ss_pred CCCEEEEEeCCCCCH-HHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEEcCCCCc
Confidence 889999999999986 799999999999999999999999999999999999986554
No 90
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=98.56 E-value=7.7e-07 Score=85.44 Aligned_cols=127 Identities=16% Similarity=0.164 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccC
Q psy1915 223 IIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDN 302 (361)
Q Consensus 223 ~~~~l~~l~~~~~~~l~~~~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~ 302 (361)
+.+.+.++|+.++++...... ..+...+.+.++++++|.|.++..+.....++......++..+.. + +.|. .+++
T Consensus 4 m~~~~~~~~~q~~~a~~~~~~-~~~~~~~~~~~~I~i~G~GgS~~~a~~~~~~l~~~~~~~~~~~~~--~-~~~~-~~~~ 78 (337)
T PRK08674 4 MLEEYLNWPEQFEEALEIAIS-LDLEEDLEKIDNIVISGMGGSGIGGDLLRILLFDELKVPVFVNRD--Y-TLPA-FVDE 78 (337)
T ss_pred HHHHHHhHHHHHHHHHHhhhc-cchhhhhcCCCEEEEEECcHHHHHHHHHHHHHHhcCCCcEEEeCc--c-chhh-cCCC
Confidence 445567788888887642111 223444557899999999999999998888876666677665433 2 3343 3488
Q ss_pred CCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCCchhhhcccc----eEEcCCC
Q psy1915 303 SMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDTETQALATK----TLEVPHT 357 (361)
Q Consensus 303 ~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~----~i~~p~~ 357 (361)
++++|+++.+|++. +++++++.++++|.++|+||+.+ ++.+.+|. ++.+|..
T Consensus 79 ~dlvI~iS~SG~T~-e~~~a~~~a~~~ga~vIaIT~~~--~L~~~a~~~~~~~i~ip~~ 134 (337)
T PRK08674 79 KTLVIAVSYSGNTE-ETLSAVEQALKRGAKIIAITSGG--KLKEMAKEHGLPVIIVPGG 134 (337)
T ss_pred CcEEEEEcCCCCCH-HHHHHHHHHHHCCCeEEEECCCc--hHHHHHHhcCCeEEEeCCC
Confidence 99999999999986 78899999999999999999743 58777766 8888853
No 91
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=98.56 E-value=5.4e-06 Score=88.12 Aligned_cols=92 Identities=17% Similarity=0.237 Sum_probs=61.4
Q ss_pred CCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEec-cc--ccc--cCCCCCCCCEEEEEcCCCCcHHHHHH
Q psy1915 75 GSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELA-SD--FLD--RNTPVFRDDVCFFISQSGETADSLMA 149 (361)
Q Consensus 75 g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~-~e--~~~--~~~~~~~~dlvI~iS~SG~t~e~~~a 149 (361)
..++++|+|+|..-. +. ..+.+.+..+.+...+.+ .+ ... ....-.+++++|++|.||+|.|++.+
T Consensus 456 d~VVviGIGGS~LG~-~~--------l~~~l~~~~~~p~l~~ldn~DP~~v~~~l~~~~~e~TLvIViSKSGtT~ET~sa 526 (948)
T PRK09533 456 TDAVVLGMGGSSLGP-EV--------LAETFGQRDGFPKLHVLDSTDPAQVRALEAAVDLARTLFIVSSKSGGTLEPNIF 526 (948)
T ss_pred CEEEEEccChhHHHH-HH--------HHHHHHhcCCCceEEEEeCCChHHHHHHHhhCCcccEEEEEEeCCCCCHHHHHH
Confidence 468899999997644 21 234444444555443321 11 111 11122367899999999999999999
Q ss_pred HHHHH---------HcCCeEEEEEcCCCCccccccC
Q psy1915 150 LRYCK---------ARGALIVGVTNTVGSSISRESH 176 (361)
Q Consensus 150 ~~~ak---------~~g~~~i~IT~~~~S~la~~ad 176 (361)
.+.++ +.|.++|+||+ ++|+|.+.|+
T Consensus 527 ~~~~~~~l~~~~g~~~~~~~VaVTd-pgs~L~~~A~ 561 (948)
T PRK09533 527 KDYFFARVKEVLGAKAGRHFVAVTD-PGSSLEKVAK 561 (948)
T ss_pred HHHHHHHhhhhcccccCCeEEEEeC-CCChHHHHHH
Confidence 99776 34778999998 6999999874
No 92
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=98.35 E-value=1.6e-05 Score=66.82 Aligned_cols=127 Identities=19% Similarity=0.168 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHH-----HHhhCcceEEEecC---------C
Q psy1915 226 GLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKI-----KELTYMHSEGIMAG---------E 291 (361)
Q Consensus 226 ~l~~l~~~~~~~l~~~~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl-----~E~~~~~a~~~~~~---------E 291 (361)
.++.+++.++++ ...+++-+.+.+.+...|.|.+++-|+..+-.| +|-..+|+.+.+.. +
T Consensus 19 ~~~~l~~~I~~a------a~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~ND 92 (176)
T COG0279 19 ALEALIEAIERA------AQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIAND 92 (176)
T ss_pred HHHHhHHHHHHH------HHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhcc
Confidence 334455554433 456788888899999999999999999766544 35556888887632 2
Q ss_pred ccc------cCccCccCCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 292 LKH------GPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 292 ~~H------gp~~~i~~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
|-+ .--..-.+++++|.|+++|.+. .++++++.++++|.++|+.|++..-.++.++|+.|.+|+...
T Consensus 93 y~yd~vFsRqveA~g~~GDvLigISTSGNS~-nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~~~D~~i~VPs~~t 165 (176)
T COG0279 93 YGYDEVFSRQVEALGQPGDVLIGISTSGNSK-NVLKAIEAAKEKGMTVIALTGKDGGKLAGLLDVEIRVPSTDT 165 (176)
T ss_pred ccHHHHHHHHHHhcCCCCCEEEEEeCCCCCH-HHHHHHHHHHHcCCEEEEEecCCCcccccccceEEecCCCcc
Confidence 221 1111224789999999999875 899999999999999999999988889999999999998653
No 93
>PF10432 bact-PGI_C: Bacterial phospho-glucose isomerase C-terminal region; InterPro: IPR019490 Phosphoglucose isomerase (PGI) catalyses the interconversion of phosphoglucose and phosphofructose, and is a component of many sugar metabolic pathways. In some archaea and bacteria PGI activity occurs via a bifunctional enzyme that also exhibits phosphomannose isomerase (PMI) activity. Though not closely related to eukaryotic PGIs, the bifunctional enzyme is similar enough that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This entry represents the C-terminal half of the bifunctional PGI/PMI enzyme, which contains many of the active catalytic site residues. The enzyme is thought to use the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity; PDB: 1TZB_A 1X9H_A 1TZC_B 1X9I_A 1WIW_A.
Probab=98.31 E-value=3.6e-06 Score=71.54 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=73.1
Q ss_pred cHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCC------CcEEEEEcCCc
Q psy1915 241 DSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNS------MPVIMILTRDP 314 (361)
Q Consensus 241 ~~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~------~~vi~i~~~g~ 314 (361)
.++++++|..+.+.-++++ |++...++|++++..|+|+++.+|.....+|+.|+.+..++.. ..++++. ++.
T Consensus 5 ~n~Ak~LA~~L~~~~Pvi~-~~~~~~~vA~R~k~qlnEnAK~~A~~~~lPE~~Hn~i~g~~~~~~~~~~~~~v~l~-d~~ 82 (155)
T PF10432_consen 5 VNPAKRLALELAGRIPVIY-GSPLYAAVARRWKQQLNENAKYPAFAAVLPEANHNEIVGWEGPEPPGGRLRVVLLR-DPE 82 (155)
T ss_dssp HHHHHHHHHHHTTSEEEEE-ECGCGCHHHHHHHHHHHHTT----EEEEETCHHHCHHHCTSS-GGGGTTEEEEEEC--TC
T ss_pred cCHHHHHHHHHcCCCcEEE-ECccchHHHHHHHHHHHHHhCCccchhcchhhhhhhhhhccCCcccccceEEEEEE-cCC
Confidence 3678999999999666665 5599999999999999999999999999999999888777533 3344443 333
Q ss_pred cHHHH---HHHHHH-HHHcCCcEEEEecCCCchhhhc
Q psy1915 315 VYVKC---MNALLQ-VIARDGRPIVICEKGDTETQAL 347 (361)
Q Consensus 315 ~~~~~---~~~~~~-~~~~g~~~v~I~~~~~~~~~~~ 347 (361)
..+++ .+.+++ +++++..++.|...+++++.++
T Consensus 83 ~~~~~~~r~~~~~e~~~~~~~~v~~v~~~g~s~l~rl 119 (155)
T PF10432_consen 83 DHPRVQRRVEITREIAEDRGVRVIEVEAEGGSPLERL 119 (155)
T ss_dssp CHHHHHHHHHHHHHHHTTCSSEEEEE--SCCCHHHHH
T ss_pred ccccchhhhHHHHHHHHhcCCcEEEEecCCCCHHHHH
Confidence 33233 355666 4567999999999988876554
No 94
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=98.29 E-value=2.1e-05 Score=73.99 Aligned_cols=115 Identities=11% Similarity=0.062 Sum_probs=80.9
Q ss_pred HHHHHHHHHhcCCeEEEEeccCCHHHHH-HHHHHHHHhhCcceEE---E------------e-cCCccc---c--CccCc
Q psy1915 243 EVQQLAKEMYEQKSMLLMGRGYNYATCM-EGALKIKELTYMHSEG---I------------M-AGELKH---G--PLALI 300 (361)
Q Consensus 243 ~~~~~a~~l~~~~~i~~iG~G~~~~~A~-e~alkl~E~~~~~a~~---~------------~-~~E~~H---g--p~~~i 300 (361)
.++.+++.+.+..+++++|.|.+..+|. ++..+...... +... + + .++..| . ....+
T Consensus 47 a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~-~~~~~~~~iagg~~a~~~a~~~~ed~~~~~~~~l~a~~l 125 (296)
T PRK12570 47 AVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSV-SPEMVIGLIAGGPEAMFTAVEGAEDDPELGAQDLKAIGL 125 (296)
T ss_pred HHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcC-CcccceeeeecCchHhhhcccccCCcHHHHHHHHHHcCC
Confidence 3567788888899999999999987743 43333322221 1111 0 0 011111 0 01224
Q ss_pred cCCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 301 DNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 301 ~~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
++++++|+++.+|++. .++.+++.++++|.++|+|++.+++++.+.+|+.|.++...|
T Consensus 126 ~~~DvvI~IS~SG~T~-~vi~al~~Ak~~Ga~~IaIT~~~~s~La~~aD~~I~~~~g~E 183 (296)
T PRK12570 126 TADDVVVGIAASGRTP-YVIGALEYAKQIGATTIALSCNPDSPIAKIADIAISPVVGPE 183 (296)
T ss_pred CCCCEEEEEeCCCCCH-HHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEeeCcCCc
Confidence 6889999999999986 799999999999999999999999999999999998654443
No 95
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=98.22 E-value=2.3e-05 Score=73.50 Aligned_cols=114 Identities=13% Similarity=0.109 Sum_probs=81.1
Q ss_pred HHHHHHHHhcCCeEEEEeccCCHHH-HHHHHHHHHHhhCcceEE------------EecCCccc-------cCc--cCcc
Q psy1915 244 VQQLAKEMYEQKSMLLMGRGYNYAT-CMEGALKIKELTYMHSEG------------IMAGELKH-------GPL--ALID 301 (361)
Q Consensus 244 ~~~~a~~l~~~~~i~~iG~G~~~~~-A~e~alkl~E~~~~~a~~------------~~~~E~~H-------gp~--~~i~ 301 (361)
++.+++.+.+..+++++|.|.+..+ ++++..++-... .+... ....|..| ... ..++
T Consensus 47 v~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g-~~~~~~~~~iaGg~~a~~~~~e~~Ed~~~~~~~dl~~~~l~ 125 (291)
T TIGR00274 47 VEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFG-VSPELVKGIIAGGECAILHAVEGAEDSTEAGANDLQNIHLT 125 (291)
T ss_pred HHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcC-CCHHHhhHHhcCChHHHhccchhhhcchHHHHHHHHhcCCC
Confidence 4566777888899999999988765 445544443322 11110 00011111 111 1367
Q ss_pred CCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 302 NSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 302 ~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
+++++|+++.+|++. .++.+++.++++|.++|+||+.+++++.+.+|+.|.++...|
T Consensus 126 ~~DvvI~IS~SG~T~-~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~~~~g~E 182 (291)
T TIGR00274 126 KNDVVVGIAASGRTP-YVIAGLQYARSLGALTISIACNPKSAASEIADIAIETIVGPE 182 (291)
T ss_pred CCCEEEEEeCCCCcH-HHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEecCCCCc
Confidence 889999999999986 799999999999999999999999999999999999875544
No 96
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=98.19 E-value=2.2e-05 Score=74.29 Aligned_cols=105 Identities=11% Similarity=0.155 Sum_probs=80.9
Q ss_pred HHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhh-CcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHHHHHHH
Q psy1915 247 LAKEMYEQKSMLLMGRGYNYATCMEGALKIKELT-YMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQ 325 (361)
Q Consensus 247 ~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~-~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~~~~~ 325 (361)
+.+.+...++++++|.|.++.+|.....++.... .+++... .++ |-| ..+++++.+|+++.+|++. +++..++.
T Consensus 14 ~~~~~~~~~~I~i~G~G~S~~~a~~l~~~l~~~~~~~~v~~~--~d~-~l~-~~~~~~dlvI~iS~SG~t~-e~~~a~~~ 88 (308)
T TIGR02128 14 IDEILKIYDEIVICGMGGSGIAGRIISILLLEKSFQGPVFVV--KDY-RLP-RFVDGKTLLIAVSYSGNTE-ETLSAVEE 88 (308)
T ss_pred HHHHHhcCCEEEEEEecHHHHHHHHHHHHHHHhCCCccEEEE--cCc-ccc-ccCCCCeEEEEEcCCCCCH-HHHHHHHH
Confidence 3344444789999999999999999999999877 3666543 233 334 3357889999999999886 68889999
Q ss_pred HHHcCCcEEEEecCCCchhhhcc----cceEEcCCCC
Q psy1915 326 VIARDGRPIVICEKGDTETQALA----TKTLEVPHTV 358 (361)
Q Consensus 326 ~~~~g~~~v~I~~~~~~~~~~~~----d~~i~~p~~~ 358 (361)
++++|.++|+||+.+ ++.+.+ +.++.+|...
T Consensus 89 A~~~g~~ii~iT~~g--~L~~~a~~~~~~~i~vP~~~ 123 (308)
T TIGR02128 89 AKKKGAKVIAITSGG--RLEEMAKERGLDVIKIPKGL 123 (308)
T ss_pred HHHcCCEEEEECCCc--HHHHHHHhcCCeEEEcCCCC
Confidence 999999999999743 566666 7888888753
No 97
>KOG1268|consensus
Probab=98.11 E-value=1.6e-05 Score=77.48 Aligned_cols=310 Identities=25% Similarity=0.377 Sum_probs=202.4
Q ss_pred CceeccccCchhhhHHHHHHHHHHhhhccCCCCCCCCcc-----------------------------------------
Q psy1915 1 IFAYLNYLTPKTRLEIIELLIKGLKRLEYRGYDSSGNNE----------------------------------------- 39 (361)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------------------------------- 39 (361)
||+|+||++|++|.||++|+++..|||+||||++.+.++
T Consensus 4 IF~Y~N~l~~R~R~eIid~Li~GLqRLEYRGYDSaGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q~~~l~~~f~sH~gI 83 (670)
T KOG1268|consen 4 IFGYCNFLIERTRGEIIDTLIDGLQRLEYRGYDSAGIAIDGDELESLLIYKQTGKVSSLKEEINNQNLNLDEKFISHCGI 83 (670)
T ss_pred eeeeeccccCCcHHHHHHHHHHHHHHhhccCCCCCceeecCCcccchhhhcccCceeehhHHHhhcCcccceeeeeeeee
Confidence 799999999999999999999999999999999887410
Q ss_pred ----------------------------------c-----------------c---------------hh----------
Q psy1915 40 ----------------------------------L-----------------E---------------GD---------- 43 (361)
Q Consensus 40 ----------------------------------~-----------------~---------------~d---------- 43 (361)
+ + .|
T Consensus 84 AHTRWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL~~~~~D~~~~~~~F~~ 163 (670)
T KOG1268|consen 84 AHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKLYKHIYDTSPEDLDFHV 163 (670)
T ss_pred eeeehhhcCCCCccCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHHHHHHHHHHhhCCCcccHHH
Confidence 0 0 01
Q ss_pred HHHHHHHHHHHHHHHhhhhccCccceeeeccCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEecccccc
Q psy1915 44 HLARHIAIMEGAFALCFKSKLFPGECVATRRGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFLD 123 (361)
Q Consensus 44 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~~ 123 (361)
.+++.+++++++|+.++.+..-|++++.++.|+++++|.-.+..+..+..+..+.+ . ...+... .
T Consensus 164 lv~~v~k~lEGaFalvfkS~hfP~e~Va~RrgSPlliGvKs~~kls~d~~~V~y~~----~--~~~~~~~---~------ 228 (670)
T KOG1268|consen 164 LVELVLKELEGAFGLLFKSSHFPGEVVAARKGSPLLIGVKSKTKLSVDFFPVEYGD----T--QEVSYLK---L------ 228 (670)
T ss_pred HHHHHHHHhhhHHHHHHHhhcCCcceeeeccCCcceeeecccccccccceeeeccc----c--ceecccc---c------
Confidence 26677899999999999999999999999999999999999887776554433310 0 0000000 0
Q ss_pred cCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEc---------------ccCCCcc
Q psy1915 124 RNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHI---------------NAGPEIG 188 (361)
Q Consensus 124 ~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~---------------~~~~e~~ 188 (361)
. .+..+.. +.... |.++=-+...+.|++-+..+-++++ .......
T Consensus 229 --~------------~~d~~~~----~~~~~--~~~vEff~aSDasa~IEhT~rV~flEDddia~v~dG~lsihr~~~~~ 288 (670)
T KOG1268|consen 229 --N------------KTDTKAS----LHFLA--GSPVEFFTASDASALIEHTKRVLFLEDDDIAHVSDGELTIHRGKRTA 288 (670)
T ss_pred --C------------Ccccccc----ccccc--CCceEEEEecCcchhheecceeEEeccCcEEEEecCceEEEeecccc
Confidence 0 0000000 00000 1122223333344444444444333 2221111
Q ss_pred cccchhHHHHHHHHHHHHHHHhhh-hcchHHHHHH-HHHHHHHHHHHHHHHHcc----------cHHHHHHHHHHhcCCe
Q psy1915 189 VASTKAYTSQFISLVMFALVMCED-RISLQTRRNE-IIKGLKVIHEQIREVLQM----------DSEVQQLAKEMYEQKS 256 (361)
Q Consensus 189 ~~~t~s~t~~~~~l~~l~~~~~~~-~~~~~~~~~~-~~~~l~~l~~~~~~~l~~----------~~~~~~~a~~l~~~~~ 256 (361)
...+ ..-+. |.+.+.+. +++ ++. +.+++-.-|+.+-..... -.-.+.+..++.++++
T Consensus 289 ~~~~--R~i~t-----lemEl~qImKG~----yd~yMqKEI~EQpeS~~ntMRGRv~~~~~~V~LGGlk~~l~~irr~rR 357 (670)
T KOG1268|consen 289 GPST--RSIQT-----LEMELQQIMKGN----YDYYMQKEIYEQPESLVNTMRGRVSFPLNKVVLGGLKDYLPEIRRCRR 357 (670)
T ss_pred CCcc--hHHHH-----HHHHHHHHcCCc----hHhhhhhHHhhCchHHHHhccceeccccceeeecCCcchhhhhhhccc
Confidence 1112 22222 22233322 222 111 233444445554444320 0124566777888999
Q ss_pred EEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccc--cCccCccCCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEE
Q psy1915 257 MLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKH--GPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPI 334 (361)
Q Consensus 257 i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~H--gp~~~i~~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v 334 (361)
++++|+|.+|..|.-....|.|.+.+|....-+.+|.- .|+. .++++||++.+|+|. +++-+++.++++|+-+|
T Consensus 358 li~iacgtSyhs~~A~R~ilEEL~eiPV~vElAsDflDR~~pif---RdDvc~FvSqSGETa-DtllaL~Yc~~~gAl~v 433 (670)
T KOG1268|consen 358 LIMVACGTSYHSALATRPILEELSEIPVSVELASDFLDRNTPIF---RDDVCFFVSQSGETA-DTLLALRYCKERGALTV 433 (670)
T ss_pred cEEEEecchHHHHHHHHHHHHHHhcCCeeeehhhhhHhcCCCce---eccEEEEEecCCchH-HHHHHHHHHHhcCceEE
Confidence 99999999999999999999999999999888889876 4443 567888999999996 78889999999999999
Q ss_pred EEecCCCchhhhcccceEEcCCCCCC
Q psy1915 335 VICEKGDTETQALATKTLEVPHTVDC 360 (361)
Q Consensus 335 ~I~~~~~~~~~~~~d~~i~~p~~~~~ 360 (361)
.|++.-.+.+.+..+.=+.+..+.|+
T Consensus 434 GvtNtvGSsIsR~thCGvHiNaGpEi 459 (670)
T KOG1268|consen 434 GVTNTVGSSISRETHCGVHINAGPEI 459 (670)
T ss_pred EeecccCcccccccccceeccCCCcc
Confidence 99998777776666666777766664
No 98
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=98.10 E-value=1.8e-05 Score=77.65 Aligned_cols=93 Identities=12% Similarity=0.104 Sum_probs=61.5
Q ss_pred CCcEEEEeccccccccccchhhhhHHHHHHHHHhc--CCceEEEe---ccccccc-CCCCCCCCEEEEEcCCCCcHHHHH
Q psy1915 75 GSPLLVGIKTKTRLATDHIPILYGKATRQLLEELT--ELPVMVEL---ASDFLDR-NTPVFRDDVCFFISQSGETADSLM 148 (361)
Q Consensus 75 g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~--g~~~~~~~---~~e~~~~-~~~~~~~dlvI~iS~SG~t~e~~~ 148 (361)
..++++|+|+|..-+. ++.+++.... +.++.+.. +.++... .....+++++|++|.||+|.||+.
T Consensus 59 ~~VV~iGIGGS~LG~~---------~l~~al~~~~~~~~~i~f~~n~dp~~~~~~l~~~~~~~TlviviSKSGtT~ETl~ 129 (410)
T PRK03868 59 KNIVVIGIGGSSLGVK---------AIYSFLKNEKNNKKELHFLENTDPISINKTLSKINLENTLFIVISKSGTTIETIS 129 (410)
T ss_pred CEEEEEecChHHHHHH---------HHHHHHHhhccCCCcEEEEecCCHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHH
Confidence 3688899999975442 2234343222 34554333 2333221 223457889999999999999999
Q ss_pred HHHHHHHcC------CeEEEEEcCCCCccccccC
Q psy1915 149 ALRYCKARG------ALIVGVTNTVGSSISRESH 176 (361)
Q Consensus 149 a~~~ak~~g------~~~i~IT~~~~S~la~~ad 176 (361)
+++.+++.+ ++.+++|..++|+|.+.|+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~v~vTd~~s~L~~~a~ 163 (410)
T PRK03868 130 IFKYLLSHFKLDQELKKNFLFITDPDSKLEQFAK 163 (410)
T ss_pred HHHHHHHHhccccccccEEEEEecCCchHHHhHH
Confidence 999998874 4455444457899999887
No 99
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=98.02 E-value=3.3e-05 Score=64.32 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=65.4
Q ss_pred HHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEE---ecC-----------CccccC----ccC--ccCC
Q psy1915 244 VQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGI---MAG-----------ELKHGP----LAL--IDNS 303 (361)
Q Consensus 244 ~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~---~~~-----------E~~Hgp----~~~--i~~~ 303 (361)
++.+++.+.+..+++++|.|.+..+|.+.+..+........... ... |+..+. ... +.++
T Consensus 25 a~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 104 (138)
T PF13580_consen 25 ADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYDIRPG 104 (138)
T ss_dssp HHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT--TT
T ss_pred HHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcCCCCC
Confidence 56677788888999999999999999999999987765432221 111 111111 112 4688
Q ss_pred CcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEec
Q psy1915 304 MPVIMILTRDPVYVKCMNALLQVIARDGRPIVICE 338 (361)
Q Consensus 304 ~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~ 338 (361)
+++|+++.+|.+. .++++++++|++|.++|++|+
T Consensus 105 Dvli~iS~SG~s~-~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 105 DVLIVISNSGNSP-NVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp -EEEEEESSS-SH-HHHHHHHHHHHTT-EEEEEEE
T ss_pred CEEEEECCCCCCH-HHHHHHHHHHHCCCEEEEEeC
Confidence 9999999999885 899999999999999999985
No 100
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=97.99 E-value=4e-05 Score=65.35 Aligned_cols=111 Identities=12% Similarity=0.095 Sum_probs=71.4
Q ss_pred HHHHHHHHHhc---CCeEEEEeccCCHH---HHHHHHHHHHHhhCcceEEEec--CCc-cccCccCccCCCcEEEEEcCC
Q psy1915 243 EVQQLAKEMYE---QKSMLLMGRGYNYA---TCMEGALKIKELTYMHSEGIMA--GEL-KHGPLALIDNSMPVIMILTRD 313 (361)
Q Consensus 243 ~~~~~a~~l~~---~~~i~~iG~G~~~~---~A~e~alkl~E~~~~~a~~~~~--~E~-~Hgp~~~i~~~~~vi~i~~~g 313 (361)
.++++++++.. .++++++|.|.++. ++.++..++.. ...+...... +++ ...+...-.+++++|+++.+|
T Consensus 6 ~i~~~~~~i~~~~~~~~iv~~GiGGS~lg~~~~~~~~~~~~~-~~~~i~~~~~~D~~~~~~~~~~~~~~~tlvi~iSkSG 84 (158)
T cd05015 6 RIKEFAEKVRSGKKITDVVVIGIGGSDLGPRAVYEALKPYFK-GGLRLHFVSNVDPDDLAELLKKLDPETTLFIVISKSG 84 (158)
T ss_pred HHHHHHHHHhcCCCCCEEEEEecCccHHHHHHHHHHHHhhcc-CCceEEEEeCCCHHHHHHHHHhCCcccEEEEEEECCc
Confidence 34556666643 68999999999998 55565555432 1333333344 444 233433334789999999999
Q ss_pred ccHHHHHHHHHHHHH---------cCCcEEEEecCCCchhhhcc----cceEEcCC
Q psy1915 314 PVYVKCMNALLQVIA---------RDGRPIVICEKGDTETQALA----TKTLEVPH 356 (361)
Q Consensus 314 ~~~~~~~~~~~~~~~---------~g~~~v~I~~~~~~~~~~~~----d~~i~~p~ 356 (361)
.|. +++...+.+++ .+.++|+||+.+ +++...+ ..++.+|.
T Consensus 85 ~T~-Et~~~~~~a~~~l~~~~~~~~~~~~vaiT~~~-s~l~~~a~~~~~~~~~~~~ 138 (158)
T cd05015 85 TTL-ETLANARLAREWLEEAGGDDLAKHFVAITDNG-SGLLKKAGIEGLNTFEIPD 138 (158)
T ss_pred CCH-HHHHHHHHHHHHHHHhccccccceEEEEcCCC-hHHHHHcCCCcceeeeCCC
Confidence 997 67777777777 788999999854 5554423 34455554
No 101
>cd05637 SIS_PGI_PMI_2 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the second SIS domain.
Probab=97.93 E-value=7.3e-05 Score=61.75 Aligned_cols=104 Identities=14% Similarity=0.079 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCC-C--cEEEEEcCCccH--H
Q psy1915 243 EVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNS-M--PVIMILTRDPVY--V 317 (361)
Q Consensus 243 ~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~-~--~vi~i~~~g~~~--~ 317 (361)
++|++|..+.+..++++ |++...++|++++..|.|+++.++..-..+|..|+.+..++.. . ..+++..+++.. .
T Consensus 2 pAk~LA~~l~g~~Pvi~-g~~~~~~~A~R~k~ql~enAK~~A~~~~lPE~~hn~i~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (132)
T cd05637 2 PAKELALELAGRIPIIY-GSTLYEPAAYRFKNQLNENAKYPAFYEELPEANHNEIVGWESPLSALPLAVILSDEDDHVRI 80 (132)
T ss_pred HHHHHHHHhcCCCCEEE-eccchHHHHHHHHHHHHHHhCCCcccccCchhcccccccccCcccccceEEEecCcccccch
Confidence 46889999998777766 6668899999999999999999999999999999988877632 1 123323222222 1
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCchhhhc
Q psy1915 318 KCMNALLQVIARDGRPIVICEKGDTETQAL 347 (361)
Q Consensus 318 ~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~ 347 (361)
+....+..+..+|..+..+...+.+++.++
T Consensus 81 ~~r~~~~~~~~~~~~~~~~~~~g~s~l~rl 110 (132)
T cd05637 81 KLRIVITKFEEGGIPYEVIESVGASPLARL 110 (132)
T ss_pred hHHHHHHHHHhcCCCeEEEecCCCCHHHHH
Confidence 211122225678899999988888876554
No 102
>COG0166 Pgi Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.88 E-value=0.00063 Score=67.15 Aligned_cols=202 Identities=13% Similarity=0.081 Sum_probs=116.6
Q ss_pred CCcEEEEeccccccccccchhhhhHHHHHHHHHhc--CCceEEEec---ccccccCCCCC-CCCEEEEEcCCCCcHHHHH
Q psy1915 75 GSPLLVGIKTKTRLATDHIPILYGKATRQLLEELT--ELPVMVELA---SDFLDRNTPVF-RDDVCFFISQSGETADSLM 148 (361)
Q Consensus 75 g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~--g~~~~~~~~---~e~~~~~~~~~-~~dlvI~iS~SG~t~e~~~ 148 (361)
..++++|+|+|+..+. +. ...+.... +..+.++.. .+.......++ +..+++++|.||+|.|++.
T Consensus 80 ~~IV~IGIGGS~LG~~-~~--------~~aL~~~~~~~~~~~Fv~nid~~~~~~~l~~i~~~~tl~iviSKSGtT~Et~~ 150 (446)
T COG0166 80 TDIVNIGIGGSDLGPR-AV--------TEALRPYAPNGPRVHFVSNVDPTYLAEVLKKLDPETTLFIVISKSGTTLETLT 150 (446)
T ss_pred ceEEEeCCchhHHHHH-HH--------HHHhhhhccCCCceEEecCCCchhhhHHHhccCcccEEEEEEeCCCCcHHHHH
Confidence 3678999999986442 21 22222222 223333322 22211112344 4468999999999999999
Q ss_pred HHHHHHHcC-------CeEEEEEcCCCCccccccC----eeEEcccCCCcccccchhHHHHHHHHHHHHHHHhhhhcchH
Q psy1915 149 ALRYCKARG-------ALIVGVTNTVGSSISRESH----CGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQ 217 (361)
Q Consensus 149 a~~~ak~~g-------~~~i~IT~~~~S~la~~ad----~~l~~~~~~e~~~~~t~s~t~~~~~l~~l~~~~~~~~~~~~ 217 (361)
.++.+|+.. .+..++|+...+.+++.++ .++.++.+ ++.--|..+. +. ++.+.++..
T Consensus 151 n~~~~r~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~f~ipd~----VGGRfS~~Sa--VG-~l~~a~~~~----- 218 (446)
T COG0166 151 NFRLARKWLEKKEEAAKKHFVATSTNGGALAVLAGENGLETFEIPDW----VGGRYSVLSA--VG-LLPLALGGI----- 218 (446)
T ss_pred HHHHHHHHHHhhhhhhhcEEEEEcCCchHHHHhcCCCceeEEECCCC----CCCccchhHH--HH-HHHHHHhcc-----
Confidence 999999887 5567777777888886654 44555532 1111122222 12 333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHH-Hcc-cHHHHHHHH----HHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCC
Q psy1915 218 TRRNEIIKGLKVIHEQIREV-LQM-DSEVQQLAK----EMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGE 291 (361)
Q Consensus 218 ~~~~~~~~~l~~l~~~~~~~-l~~-~~~~~~~a~----~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E 291 (361)
...++++....+++.+... ++. .+....++. .+.+...-.++.+.+....+.++-.++.+-+.-.......++
T Consensus 219 -~~~~lL~Ga~~~d~~~~~~~l~~N~~~l~ali~~~~~~~~G~~~~~i~~Y~~~l~~f~~~~qQL~~ES~GK~~~~~~~~ 297 (446)
T COG0166 219 -DFKELLEGAAAADEHFRTTPLEENLAVLYALIGIWYYNFKGAEIEVILPYDPYLEYFPAWLQQLNMESNGKSVKGIGPE 297 (446)
T ss_pred -cHHHHHHHHHHHHHHhccCChhhcHHHHHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHHhccCCCccCcCCc
Confidence 2455666666666555542 221 122223333 223456677889999999999988888888876665555555
Q ss_pred cc--ccCcc
Q psy1915 292 LK--HGPLA 298 (361)
Q Consensus 292 ~~--Hgp~~ 298 (361)
+. ++|..
T Consensus 298 ~~~~t~~~~ 306 (446)
T COG0166 298 VNFHTDPIS 306 (446)
T ss_pred cccCCCcee
Confidence 55 45554
No 103
>PRK14096 pgi glucose-6-phosphate isomerase; Provisional
Probab=97.53 E-value=0.0013 Score=66.27 Aligned_cols=47 Identities=26% Similarity=0.352 Sum_probs=39.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH----cC----CeEEEEEcCCCCccccccC
Q psy1915 129 FRDDVCFFISQSGETADSLMALRYCKA----RG----ALIVGVTNTVGSSISRESH 176 (361)
Q Consensus 129 ~~~dlvI~iS~SG~t~e~~~a~~~ak~----~g----~~~i~IT~~~~S~la~~ad 176 (361)
.+++++|++|.||.|.||...++.+++ +| ...|+||+ ++|+|.+.++
T Consensus 167 ~~~TLviViSKSGtT~ET~~n~~~~~~~l~~~G~~~~~h~VAVT~-~~s~L~~~A~ 221 (528)
T PRK14096 167 LATTLVVVISKSGGTPETRNGMLEAKAAYEAAGLDFASHAVAITM-KGSKLDQLAQ 221 (528)
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHHHHHHHhhcccccceEEEEEC-CCcHHhhhcc
Confidence 367899999999999999999986554 34 57999998 7889999883
No 104
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=97.32 E-value=0.003 Score=57.12 Aligned_cols=122 Identities=15% Similarity=0.114 Sum_probs=81.9
Q ss_pred HHHHHHHHcc-cHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCc-ceEEEecCCccc-----cCc------
Q psy1915 231 HEQIREVLQM-DSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYM-HSEGIMAGELKH-----GPL------ 297 (361)
Q Consensus 231 ~~~~~~~l~~-~~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~-~a~~~~~~E~~H-----gp~------ 297 (361)
|..++.++.. ...++..+..+.+.-+++|+|.|.+-=.. +...+-+ |+++. .+|..- |+-
T Consensus 36 ~~AV~~alp~Ia~Av~~~~~~l~~GGRLiY~GAGTSGRLG------vlDAsEcPPTfgv-~~e~ViglIAGG~~A~~~av 108 (298)
T COG2103 36 PLAVEAALPQIAAAVDIIAAALKQGGRLIYIGAGTSGRLG------VLDASECPPTFGV-PPELVIGLIAGGEEAILKAV 108 (298)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCCeEEEEcCCcccchh------ccchhhCCCCcCC-ChhHeeeeecCCHHHHHHhh
Confidence 4444444431 23467788899999999999999763221 1111111 12221 111111 111
Q ss_pred ----------------cCccCCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCCC
Q psy1915 298 ----------------ALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVDC 360 (361)
Q Consensus 298 ----------------~~i~~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~~ 360 (361)
..++++++|+.++-+|.|. .++-.+++.+++|+.+|.|.+++++++...+|+.|..--..|.
T Consensus 109 EGaED~~~~g~~dl~~~~lt~~DvvvgIaASGrTP-Yvigal~yAr~~Ga~Ti~iacNp~s~i~~~Ad~~I~~~vGPEv 186 (298)
T COG2103 109 EGAEDDEELGEADLKNIGLTAKDVVVGIAASGRTP-YVIGALEYARQRGATTIGIACNPGSAISRIADIAIEPVVGPEV 186 (298)
T ss_pred cCccccHHHHHHHHHHcCCCcCCEEEEEecCCCCc-hhhHHHHHHHhcCCeEEEeecCCCchhhhhcCcceeeccCccc
Confidence 1134678999999999985 8999999999999999999999999999999999887555554
No 105
>PRK14095 pgi glucose-6-phosphate isomerase; Provisional
Probab=97.31 E-value=0.0012 Score=66.40 Aligned_cols=47 Identities=26% Similarity=0.331 Sum_probs=38.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHH----HHHHcC----CeEEEEEcCCCCccccccCe
Q psy1915 130 RDDVCFFISQSGETADSLMALR----YCKARG----ALIVGVTNTVGSSISRESHC 177 (361)
Q Consensus 130 ~~dlvI~iS~SG~t~e~~~a~~----~ak~~g----~~~i~IT~~~~S~la~~ad~ 177 (361)
+.+++|++|.||.|.||+..++ .+++.| ..+|+||. +++++++..++
T Consensus 204 e~TLfiviSKSGtT~ETl~n~~~~r~wl~~~G~~~~~h~VaVT~-~~s~l~~~~~~ 258 (533)
T PRK14095 204 AKTLFIVVSKSGTTLETAANEEFVRDALKKAGLDYKKHFIAVTS-EGSPMDDESGY 258 (533)
T ss_pred ccEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCccccceEEEEEC-CchHHHhhcCc
Confidence 6789999999999999999844 444555 57999998 67889886665
No 106
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=97.26 E-value=0.0015 Score=64.67 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=40.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH--------cCCeEEEEEcCCCCccccccC
Q psy1915 130 RDDVCFFISQSGETADSLMALRYCKA--------RGALIVGVTNTVGSSISRESH 176 (361)
Q Consensus 130 ~~dlvI~iS~SG~t~e~~~a~~~ak~--------~g~~~i~IT~~~~S~la~~ad 176 (361)
+++++|++|.||+|.||..+++.+++ .+..+|+||+..+++|.+.|+
T Consensus 132 ~~Tl~iviSKSGtT~ET~~~f~~~~~~l~~~g~~~~~~~vaiTd~~~g~L~~~A~ 186 (446)
T PRK00973 132 EKTLFNVISKSGNTAETLANYLIIRGILEKLGLDPKKHLVFTTDPEKGKLKKIAE 186 (446)
T ss_pred ccEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCccccceEEEEcCCCccchHHHHH
Confidence 66799999999999999999998876 456899999976778888776
No 107
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=96.74 E-value=0.034 Score=48.45 Aligned_cols=110 Identities=13% Similarity=0.098 Sum_probs=72.5
Q ss_pred HHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhC-cceEEEecCC-ccc-cCcc------------------Ccc
Q psy1915 243 EVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTY-MHSEGIMAGE-LKH-GPLA------------------LID 301 (361)
Q Consensus 243 ~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~-~~a~~~~~~E-~~H-gp~~------------------~i~ 301 (361)
.++.+|+.+.+..++++.|+|.++.+|.|.=.+ ..+ .+..++-.+. +.| |+.. .+.
T Consensus 27 aa~lVAesi~n~g~i~~FG~GHShm~aeEv~yR---AGGLa~~~pIL~~plMLhega~ass~lErieg~~~~~l~~~~i~ 103 (243)
T COG4821 27 AAKLVAESIMNDGRIYVFGSGHSHMLAEEVFYR---AGGLAPIKPILMEPLMLHEGAVASSYLERIEGYAKLFLHRLQIR 103 (243)
T ss_pred HHHHHHHHHhcCCEEEEecCchHHHHHHHHHhh---cCCccccccccCChhhhcccccccchhHhhhhHHHHHHHHhcCC
Confidence 356788888899999999999999999874322 222 2222222222 223 2111 123
Q ss_pred CCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCCc-----------hhhhcccceEEcCC
Q psy1915 302 NSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDT-----------ETQALATKTLEVPH 356 (361)
Q Consensus 302 ~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~-----------~~~~~~d~~i~~p~ 356 (361)
++++.|+++++|... -=++.+++.++.|+++|++|+-.-+ .+-..+|.++.-.+
T Consensus 104 ~~DVliviSnSGrNp-vpie~A~~~rekGa~vI~vTSl~ySq~~~SRh~SGK~Ly~~aDvVlDN~a 168 (243)
T COG4821 104 PNDVLIVISNSGRNP-VPIEVAEYAREKGAKVIAVTSLDYSQSQASRHKSGKLLYEFADVVLDNGA 168 (243)
T ss_pred CCCEEEEEeCCCCCC-cchHHHHHHHhcCCeEEEEehhhhhhhchhcccchhHHhhhcceeeeCCC
Confidence 678899999998754 2367889999999999999984332 35556677766543
No 108
>cd05010 SIS_AgaS_like AgaS-like protein. AgaS contains a SIS (Sugar ISomerase) domain which is found in many phosphosugar isomerases and phosphosugar binding proteins. AgaS is a putative isomerase in Escherichia coli. It is similar to the glucosamine-6-phosphate synthases (GlmS) which catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source.
Probab=96.47 E-value=0.032 Score=47.14 Aligned_cols=81 Identities=14% Similarity=0.155 Sum_probs=59.9
Q ss_pred cEEEEeccccccccccchhhhhHHHHHHHHHh-cC-CceEEEecccccccC-CCCCCCCEEEEEcCCCCcHH--HHHHHH
Q psy1915 77 PLLVGIKTKTRLATDHIPILYGKATRQLLEEL-TE-LPVMVELASDFLDRN-TPVFRDDVCFFISQSGETAD--SLMALR 151 (361)
Q Consensus 77 i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~-~g-~~~~~~~~~e~~~~~-~~~~~~dlvI~iS~SG~t~e--~~~a~~ 151 (361)
++++|-|.+..+|.+.+ -.+++. .+ +.+....+.||.+.+ ..++++..+|++-..+.+.+ ..++++
T Consensus 1 ~~~lGrG~~y~~A~E~A---------LKlkE~s~~~~~ae~~s~~Ef~HGP~alv~~~~~vi~l~~~d~~~~~~~~~~~~ 71 (151)
T cd05010 1 VVYLGSGPLAGLAREAA---------LKVLELTAGKVATVYDSPLGFRHGPKSLVDDDTLVVVFVSNDPYTRQYDLDLLK 71 (151)
T ss_pred CEEEecCCcHHHHHHHH---------HHHHHHhccchhhccccccccccCcHHHccCCceEEEEEcCCchHHHHHHHHHH
Confidence 46789998888876543 233443 33 577777888888765 35778888888888888653 568899
Q ss_pred HHHHc--CCeEEEEEcC
Q psy1915 152 YCKAR--GALIVGVTNT 166 (361)
Q Consensus 152 ~ak~~--g~~~i~IT~~ 166 (361)
..+++ |+++++|+..
T Consensus 72 ei~~~~~g~~vi~i~~~ 88 (151)
T cd05010 72 ELRRDGIAARVIAISPE 88 (151)
T ss_pred HHHhccCCCeEEEEEcC
Confidence 98887 8999999875
No 109
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=96.13 E-value=0.0011 Score=49.28 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=18.5
Q ss_pred HHHHHHHhhhccCCCCCCCC
Q psy1915 18 ELLIKGLKRLEYRGYDSSGN 37 (361)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~ 37 (361)
.||+||||+|||+||.+++.
T Consensus 49 sti~Rf~kkLG~~gf~efk~ 68 (77)
T PF01418_consen 49 STIVRFCKKLGFSGFKEFKI 68 (77)
T ss_dssp HHHHHHHHHCTTTCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHH
Confidence 48999999999999999886
No 110
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=95.67 E-value=0.062 Score=52.94 Aligned_cols=103 Identities=11% Similarity=0.097 Sum_probs=59.8
Q ss_pred cCCeEEEEeccCCHHHHHHHHHHHHHhh--CcceEEE---ecCCccccCccCccCCCcEEEEEcCCccHHHHHHHHHHHH
Q psy1915 253 EQKSMLLMGRGYNYATCMEGALKIKELT--YMHSEGI---MAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVI 327 (361)
Q Consensus 253 ~~~~i~~iG~G~~~~~A~e~alkl~E~~--~~~a~~~---~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~~~~~~~ 327 (361)
+.+.++++|.|.++.-++-...-+.... ..+.... +..++.+--...-.+++.+++++-+|.|. +++...+.++
T Consensus 57 ~~~~VV~iGIGGS~LG~~~l~~al~~~~~~~~~i~f~~n~dp~~~~~~l~~~~~~~TlviviSKSGtT~-ETl~~~~~~~ 135 (410)
T PRK03868 57 SIKNIVVIGIGGSSLGVKAIYSFLKNEKNNKKELHFLENTDPISINKTLSKINLENTLFIVISKSGTTI-ETISIFKYLL 135 (410)
T ss_pred CCCEEEEEecChHHHHHHHHHHHHHhhccCCCcEEEEecCCHHHHHHHHhcCCCCcEEEEEEeCCCCCH-HHHHHHHHHH
Confidence 5689999999998776664444333211 2222211 22233222112234678888989899987 5666777776
Q ss_pred HcC------Cc-EEEEecCCCchhhhccc----ceEEcCCC
Q psy1915 328 ARD------GR-PIVICEKGDTETQALAT----KTLEVPHT 357 (361)
Q Consensus 328 ~~g------~~-~v~I~~~~~~~~~~~~d----~~i~~p~~ 357 (361)
+++ ++ +++||+ +++++.+.+. .++.+|..
T Consensus 136 ~~~~~~~~~~~~~v~vTd-~~s~L~~~a~~~g~~~f~ip~~ 175 (410)
T PRK03868 136 SHFKLDQELKKNFLFITD-PDSKLEQFAKENNIKCFNIPKN 175 (410)
T ss_pred HHhccccccccEEEEEec-CCchHHHhHHhcCCcEEecCCC
Confidence 653 33 445555 4456655554 56777754
No 111
>PRK14097 pgi glucose-6-phosphate isomerase; Provisional
Probab=95.53 E-value=0.091 Score=52.36 Aligned_cols=54 Identities=26% Similarity=0.281 Sum_probs=38.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH----Hc-C---C--eEEEEEcCCCCccccccC----eeEEcc
Q psy1915 129 FRDDVCFFISQSGETADSLMALRYCK----AR-G---A--LIVGVTNTVGSSISRESH----CGIHIN 182 (361)
Q Consensus 129 ~~~dlvI~iS~SG~t~e~~~a~~~ak----~~-g---~--~~i~IT~~~~S~la~~ad----~~l~~~ 182 (361)
.+++++|+||.||.|.|+...++.++ +. | + .+++||+...+.|-+.++ .++.++
T Consensus 134 ~~~tl~iViSKSGtT~ET~~~~~~~~~~l~~~~g~~~~~~~~v~iTd~~~~~L~~~a~~~g~~~f~ip 201 (448)
T PRK14097 134 DKDFSINVISKSGTTTEPAIAFRIFKELLEKKYGKEEAKKRIYATTDKAKGALKTLADAEGYETFVIP 201 (448)
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcccccceEEEEeCCCchHhhccchhcCcCEEeCC
Confidence 46789999999999999999887665 21 3 1 267777655556888777 245554
No 112
>PLN02649 glucose-6-phosphate isomerase
Probab=95.40 E-value=0.37 Score=49.29 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=35.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHc-----C-----CeEEEEEcCCCCccccccC
Q psy1915 129 FRDDVCFFISQSGETADSLMALRYCKAR-----G-----ALIVGVTNTVGSSISRESH 176 (361)
Q Consensus 129 ~~~dlvI~iS~SG~t~e~~~a~~~ak~~-----g-----~~~i~IT~~~~S~la~~ad 176 (361)
.+.+++|++|.||.|.||...++.+++. | -..|+|| +++++.+.+.
T Consensus 204 p~~TL~iViSKSgtT~ET~~n~~~~r~~l~~~~g~~~~~~h~vavT--~~~~l~~~a~ 259 (560)
T PLN02649 204 PETTLVVVVSKTFTTAETMLNARTVRKWLRDALGGLAVAKHMVAVS--TNLLLVNKFG 259 (560)
T ss_pred cccEEEEEEeCCCCCHHHHHHHHHHHHHHHhhcccccccceEEEEC--CChHHHHHhC
Confidence 3567999999999999999988877632 2 2378888 4567877765
No 113
>PRK00179 pgi glucose-6-phosphate isomerase; Reviewed
Probab=95.03 E-value=0.33 Score=49.47 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=35.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH----Hc-------CCeEEEEEcCCCCccccccC---eeEEcc
Q psy1915 129 FRDDVCFFISQSGETADSLMALRYCK----AR-------GALIVGVTNTVGSSISRESH---CGIHIN 182 (361)
Q Consensus 129 ~~~dlvI~iS~SG~t~e~~~a~~~ak----~~-------g~~~i~IT~~~~S~la~~ad---~~l~~~ 182 (361)
.+.+++|++|.||.|.||...++.++ ++ +-..|+||.+ .+++.+..- .++.++
T Consensus 197 ~~~TL~iViSKSgtT~ET~~n~~~~~~~l~~~~~~~~~~~~h~vaVT~~-~~~~~~~g~~~~~~F~~~ 263 (548)
T PRK00179 197 PETTLFIVASKTFTTQETLTNAHSARDWFLAAGGDEAAVAKHFVAVSTN-AEAVAEFGIDPDNMFGFW 263 (548)
T ss_pred cccEEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCccccccceEEEEcCC-cHHHHHcCCchhcEEECC
Confidence 36789999999999999996665544 22 1237788875 455555432 255554
No 114
>PF00342 PGI: Phosphoglucose isomerase The structure is C alpha atoms only with no sequence assignment.; InterPro: IPR001672 Phosphoglucose isomerase (5.3.1.9 from EC) (PGI) [, ] is a dimeric enzyme that catalyses the reversible isomerization of glucose-6-phosphate and fructose-6-phosphate. PGI is involved in different pathways: in most higher organisms it is involved in glycolysis; in mammals it is involved in gluconeogenesis; in plants in carbohydrate biosynthesis; in some bacteria it provides a gateway for fructose into the Entner-Doudouroff pathway. The multifunctional protein, PGI, is also known as neuroleukin (a neurotrophic factor that mediates the differentiation of neurons), autocrine motility factor (a tumour-secreted cytokine that regulates cell motility), differentiation and maturation mediator and myofibril-bound serine proteinase inhibitor, and has different roles inside and outside the cell. In the cytoplasm, it catalyses the second step in glycolysis, while outside the cell it serves as a nerve growth factor and cytokine []. PGI from Bacillus stearothermophilus has an open twisted alpha/beta structural motif consisting of two globular domains and two protruding parts. It has been suggested that the top part of the large domain together with one of the protruding loops might participate in inducing the neurotrophic activity []. The structure of rabbit muscle phosphoglucose isomerase complexed with various inhibitors shows that the enzyme is a dimer with two alpha/beta-sandwich domains in each subunit. The location of the bound D-gluconate 6-phosphate inhibitor leads to the identification of residues involved in substrate specificity. In addition, the positions of amino acid residues that are substituted in the genetic disease nonspherocytic hemolytic anemia suggest how these substitutions can result in altered catalysis or protein stability [, ].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis; PDB: 1ZZG_B 1JIQ_A 1IRI_B 1IAT_A 1JLH_C 1NUH_A 1KOJ_A 1HOX_A 1G98_B 1DQR_A ....
Probab=94.58 E-value=0.6 Score=47.08 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=52.7
Q ss_pred CcEEEEeccccccccccchhhhhHHHHHHHHHhcC--CceEEEeccc---ccccCCCC-CCCCEEEEEcCCCCcHHHHHH
Q psy1915 76 SPLLVGIKTKTRLATDHIPILYGKATRQLLEELTE--LPVMVELASD---FLDRNTPV-FRDDVCFFISQSGETADSLMA 149 (361)
Q Consensus 76 ~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g--~~~~~~~~~e---~~~~~~~~-~~~dlvI~iS~SG~t~e~~~a 149 (361)
.++++|+|+|..-. .+ +...+..... ..+.+....+ +......+ .+.+++|++|.||.|.|+...
T Consensus 98 ~vV~IGIGGS~LGp-~~--------~~~al~~~~~~~~~~~f~~n~Dp~~l~~~l~~ld~~~Tl~iViSKSgtT~ET~~n 168 (486)
T PF00342_consen 98 DVVVIGIGGSSLGP-RA--------LYEALKPYFSNPPRLHFLDNVDPADLARLLERLDPETTLFIVISKSGTTIETLAN 168 (486)
T ss_dssp EEEEE--GGGTHHH-HH--------HHHHTGGGTTSSCEEEEESSSSHHHHHHHHTTSTGGGEEEEEEESSST-HHHHHH
T ss_pred EEEEEecchhhHHH-HH--------HHHHhhhhcccceEEEEeccCChHHHHHHHhcCCCccEEEEEecCCCCCHHHHHH
Confidence 57899999997532 11 1222222222 2333332222 21111233 356799999999999999998
Q ss_pred HHHHHHc-----------CCeEEEEEcCCCCccccccC--eeEEcc
Q psy1915 150 LRYCKAR-----------GALIVGVTNTVGSSISRESH--CGIHIN 182 (361)
Q Consensus 150 ~~~ak~~-----------g~~~i~IT~~~~S~la~~ad--~~l~~~ 182 (361)
++.+++. +-..++||++....+....+ ..+.++
T Consensus 169 ~~~~~~~l~~~~~~~~~~~~h~vavT~~~~~~~~~~~~~~~~f~~~ 214 (486)
T PF00342_consen 169 FRIAREWLEKKGGDKEEAAKHFVAVTDNGSGALKFGIDEENIFPIP 214 (486)
T ss_dssp HHHHHHHHHHHHHSGGGGGGTEEEEESSHHHHHHHTHHGGGEEE--
T ss_pred HHHHHHHHHhhcCccccccceEEEeCCCchHHHHHHHHHhcceecc
Confidence 8877642 24589999876544433332 555554
No 115
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=94.37 E-value=0.28 Score=53.00 Aligned_cols=105 Identities=10% Similarity=-0.041 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhc--CCeEEEEeccCCHHHHHHHHHHHHHhhCcceEE---EecCCccccCccCcc-CCCcEEEEEcCCcc
Q psy1915 242 SEVQQLAKEMYE--QKSMLLMGRGYNYATCMEGALKIKELTYMHSEG---IMAGELKHGPLALID-NSMPVIMILTRDPV 315 (361)
Q Consensus 242 ~~~~~~a~~l~~--~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~---~~~~E~~Hgp~~~i~-~~~~vi~i~~~g~~ 315 (361)
+.++++++++.. .++++++|.|.|+.-.+-....+......+... +..+.+...-...++ +++.+|+++-+|.|
T Consensus 441 ~~i~~fa~~Ir~~~~d~VVviGIGGS~LG~~~l~~~l~~~~~~p~l~~ldn~DP~~v~~~l~~~~~e~TLvIViSKSGtT 520 (948)
T PRK09533 441 AEYEAFAEEVRAEGFTDAVVLGMGGSSLGPEVLAETFGQRDGFPKLHVLDSTDPAQVRALEAAVDLARTLFIVSSKSGGT 520 (948)
T ss_pred HHHHHHHHHHhcCCCCEEEEEccChhHHHHHHHHHHHHhcCCCceEEEEeCCChHHHHHHHhhCCcccEEEEEEeCCCCC
Confidence 356678888775 689999999988766654433333222222221 111222111111223 56788888888988
Q ss_pred HHHHHHHHHHHH---------HcCCcEEEEecCCCchhhhcc
Q psy1915 316 YVKCMNALLQVI---------ARDGRPIVICEKGDTETQALA 348 (361)
Q Consensus 316 ~~~~~~~~~~~~---------~~g~~~v~I~~~~~~~~~~~~ 348 (361)
.| +....+.++ +.+.++|+||+. .+++.+.+
T Consensus 521 ~E-T~sa~~~~~~~l~~~~g~~~~~~~VaVTdp-gs~L~~~A 560 (948)
T PRK09533 521 LE-PNIFKDYFFARVKEVLGAKAGRHFVAVTDP-GSSLEKVA 560 (948)
T ss_pred HH-HHHHHHHHHHHhhhhcccccCCeEEEEeCC-CChHHHHH
Confidence 74 444555443 235678888884 45565543
No 116
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=94.26 E-value=0.24 Score=42.24 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=36.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEE-c-CCCCccccccCeeEEccc
Q psy1915 127 PVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVT-N-TVGSSISRESHCGIHINA 183 (361)
Q Consensus 127 ~~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT-~-~~~S~la~~ad~~l~~~~ 183 (361)
.+.+-|-|+.+|..-+.++.++.++.++++|+++++|+ + ..+.++..+||+.|.+..
T Consensus 78 ~lt~~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs~~~~~~~~l~~~~~~~Idl~~ 136 (172)
T PF10740_consen 78 ELTETDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVSPNKPDEEDLEDLADVHIDLKL 136 (172)
T ss_dssp ---TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE-SS---TTGGG-SSS-EE---
T ss_pred cccccceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEEecCCCCCchhhhhhheeeccc
Confidence 46778999999999999999999999999999999999 3 345678999998887643
No 117
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=93.93 E-value=0.86 Score=38.96 Aligned_cols=105 Identities=12% Similarity=0.144 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHHHHH
Q psy1915 244 VQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNAL 323 (361)
Q Consensus 244 ~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~~~~ 323 (361)
++-+|+.+-+..++|+-|.|..-++..++-.--.-+. .+..+.. .++.+..+++-+.|++|++.-.. ++..+.+
T Consensus 28 ARlLAQA~vgeG~IYi~G~~Em~~v~~~Al~g~E~l~--~~k~l~~---~~~~~~~lt~~DRVllfs~~~~~-~e~~~~a 101 (172)
T PF10740_consen 28 ARLLAQAIVGEGTIYIYGFGEMEAVEAEALYGAEPLP--SAKRLSE---DLENFDELTETDRVLLFSPFSTD-EEAVALA 101 (172)
T ss_dssp HHHHHHHHHTT--EEEEE-GGGGGGHHHHHCSTT--T--TEEE--T---T--------TT-EEEEEES-S---HHHHHHH
T ss_pred HHHHHHHHhcCCEEEEEecChHHHHHHHHHcCCCCCc--hhhcCcc---cccccccccccceEEEEeCCCCC-HHHHHHH
Confidence 4557777778899999999988777654221111110 1111111 02223446677788888866544 3677888
Q ss_pred HHHHHcCCcEEEEe-cCC-CchhhhcccceEEc
Q psy1915 324 LQVIARDGRPIVIC-EKG-DTETQALATKTLEV 354 (361)
Q Consensus 324 ~~~~~~g~~~v~I~-~~~-~~~~~~~~d~~i~~ 354 (361)
+.+...|..+|+|+ ..+ +..+.+++|+.|.+
T Consensus 102 ~~L~~~gi~~v~Vs~~~~~~~~l~~~~~~~Idl 134 (172)
T PF10740_consen 102 KQLIEQGIPFVGVSPNKPDEEDLEDLADVHIDL 134 (172)
T ss_dssp HHHHHHT--EEEEE-SS---TTGGG-SSS-EE-
T ss_pred HHHHHCCCCEEEEEecCCCCCchhhhhhheeec
Confidence 88999999999999 443 33577888888765
No 118
>PRK14095 pgi glucose-6-phosphate isomerase; Provisional
Probab=93.27 E-value=0.43 Score=48.40 Aligned_cols=98 Identities=14% Similarity=0.062 Sum_probs=49.2
Q ss_pred CCeEEEEeccCCH----HHHHHHHHHH--HHhhCcceEEEecCCccccCccCccC-CCcEEEEEcCCccHHHHHHH----
Q psy1915 254 QKSMLLMGRGYNY----ATCMEGALKI--KELTYMHSEGIMAGELKHGPLALIDN-SMPVIMILTRDPVYVKCMNA---- 322 (361)
Q Consensus 254 ~~~i~~iG~G~~~----~~A~e~alkl--~E~~~~~a~~~~~~E~~Hgp~~~i~~-~~~vi~i~~~g~~~~~~~~~---- 322 (361)
.+.++++|.|.++ .++. +++- .....++......++-.+.-...+++ .|++|+++-+|.|.| ++..
T Consensus 151 ~~~VV~IGIGGS~LGp~av~~--AL~~~~~~~~~l~fvsNvDp~~~~e~L~~ldpe~TLfiviSKSGtT~E-Tl~n~~~~ 227 (533)
T PRK14095 151 FTTVVQIGIGGSDLGPKALYL--ALKNYAKKDKRVHFISNVDPDDAAEVLSEIDLAKTLFIVVSKSGTTLE-TAANEEFV 227 (533)
T ss_pred cceEEEEecCcchHhHHHHHH--HHHhhccCCceEEEECCCCHHHHHHHHhcCCcccEEEEEEeCCCCCHH-HHHHHHHH
Confidence 5789999999887 2222 2221 11111211111111111122222343 466777777788874 4434
Q ss_pred HHHHHHcC----CcEEEEecCCCchhhhcccc--eEEcC
Q psy1915 323 LLQVIARD----GRPIVICEKGDTETQALATK--TLEVP 355 (361)
Q Consensus 323 ~~~~~~~g----~~~v~I~~~~~~~~~~~~d~--~i~~p 355 (361)
.+++++.| .++|+||+++ +++.+..++ ++.+|
T Consensus 228 r~wl~~~G~~~~~h~VaVT~~~-s~l~~~~~~~~~f~~~ 265 (533)
T PRK14095 228 RDALKKAGLDYKKHFIAVTSEG-SPMDDESGYLEVFHMW 265 (533)
T ss_pred HHHHHHcCccccceEEEEECCc-hHHHhhcCccccCCCC
Confidence 34455544 4788888844 456554554 34444
No 119
>PRK14096 pgi glucose-6-phosphate isomerase; Provisional
Probab=93.13 E-value=0.64 Score=47.13 Aligned_cols=102 Identities=17% Similarity=0.068 Sum_probs=54.1
Q ss_pred CCeEEEEeccCCHHHHHHHHHHHHHh-h--CcceEEEecCCccccCccCcc---CCCcEEEEEcCCccHHHHHHHHH---
Q psy1915 254 QKSMLLMGRGYNYATCMEGALKIKEL-T--YMHSEGIMAGELKHGPLALID---NSMPVIMILTRDPVYVKCMNALL--- 324 (361)
Q Consensus 254 ~~~i~~iG~G~~~~~A~e~alkl~E~-~--~~~a~~~~~~E~~Hgp~~~i~---~~~~vi~i~~~g~~~~~~~~~~~--- 324 (361)
.+.++++|-|.++--.+-..--+... . .++......++..+.-+..++ ++|++++++-+|.|.| ++...+
T Consensus 114 ~~~vV~IGIGGS~LGp~~v~~AL~~~~~~~~~~f~dN~Dp~~~~~~l~~l~~~~~~TLviViSKSGtT~E-T~~n~~~~~ 192 (528)
T PRK14096 114 FTDVLWIGIGGSALGPQFVAEALQPNSDGLNIHFIDNTDPDGIDRVLAELGDRLATTLVVVISKSGGTPE-TRNGMLEAK 192 (528)
T ss_pred CCeEEEECCCcchHHHHHHHHHHhhcCCCCcEEEEcCCCHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHH-HHHHHHHHH
Confidence 57899999776643333222112211 1 122222223333333333344 5688888888898874 443433
Q ss_pred -HHHHcC----CcEEEEecCCCchhhhcc---c--ceEEcCCC
Q psy1915 325 -QVIARD----GRPIVICEKGDTETQALA---T--KTLEVPHT 357 (361)
Q Consensus 325 -~~~~~g----~~~v~I~~~~~~~~~~~~---d--~~i~~p~~ 357 (361)
.+++.| .+.|+||+.+ +++.+.+ + .++.+|..
T Consensus 193 ~~l~~~G~~~~~h~VAVT~~~-s~L~~~A~~~g~~~~F~~~d~ 234 (528)
T PRK14096 193 AAYEAAGLDFASHAVAITMKG-SKLDQLAQSEGWLARFPMWDW 234 (528)
T ss_pred HHHHhhcccccceEEEEECCC-cHHhhhccccCceeEeeCCCC
Confidence 244333 4788899844 5676666 3 45766653
No 120
>PTZ00430 glucose-6-phosphate isomerase; Provisional
Probab=92.43 E-value=0.65 Score=47.37 Aligned_cols=39 Identities=13% Similarity=0.246 Sum_probs=28.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHc-----C------CeEEEEEcCC
Q psy1915 129 FRDDVCFFISQSGETADSLMALRYCKAR-----G------ALIVGVTNTV 167 (361)
Q Consensus 129 ~~~dlvI~iS~SG~t~e~~~a~~~ak~~-----g------~~~i~IT~~~ 167 (361)
.+.+++|++|.||.|.||...++.+++. | -..|+||.+.
T Consensus 199 p~~TLfiViSKSgtT~ETl~n~~~~r~wl~~~~~~~~~~~~h~vavT~~~ 248 (552)
T PTZ00430 199 PEETLVVIISKTFTTAETMLNAKTVRQWLLDNIKSKEALSKHLCAVSTNL 248 (552)
T ss_pred cccEEEEEEeCCCCCHHHHHHHHHHHHHHHHhccccccccCeEEEEcCch
Confidence 3567999999999999999666655421 1 2478999754
No 121
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=91.84 E-value=0.85 Score=45.43 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=34.6
Q ss_pred cc-CCCcEEEEEcCCccHHHHHHHHHHHHH--------cCCcEEEEecCCCchhhhccc----ceEEcCCC
Q psy1915 300 ID-NSMPVIMILTRDPVYVKCMNALLQVIA--------RDGRPIVICEKGDTETQALAT----KTLEVPHT 357 (361)
Q Consensus 300 i~-~~~~vi~i~~~g~~~~~~~~~~~~~~~--------~g~~~v~I~~~~~~~~~~~~d----~~i~~p~~ 357 (361)
++ +++.+++++-+|.|.| ++...+.+++ .+.++|+||+.+...+.+.++ .++.+|..
T Consensus 129 l~~~~Tl~iviSKSGtT~E-T~~~f~~~~~~l~~~g~~~~~~~vaiTd~~~g~L~~~A~~~g~~~f~ip~~ 198 (446)
T PRK00973 129 IDLEKTLFNVISKSGNTAE-TLANYLIIRGILEKLGLDPKKHLVFTTDPEKGKLKKIAEKEGYRTLEIPEN 198 (446)
T ss_pred CCcccEEEEEEeCCCCCHH-HHHHHHHHHHHHHhcCccccceEEEEcCCCccchHHHHHHcCCcEEeeCCC
Confidence 45 5688888898999875 4434443332 345788888854433433332 46777754
No 122
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=88.68 E-value=13 Score=34.03 Aligned_cols=112 Identities=12% Similarity=0.121 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccCccceeeeccCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEE--Eecccc
Q psy1915 44 HLARHIAIMEGAFALCFKSKLFPGECVATRRGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMV--ELASDF 121 (361)
Q Consensus 44 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~--~~~~e~ 121 (361)
.+.++...|..+...+.. ..++ +.++++|.... ++... ..+.+ .+|-.... +.+.-+
T Consensus 50 dL~kT~~~L~~Aa~~i~~-i~~~--------~~Il~Vstr~~---~~~~V--------~k~A~-~tg~~~i~~Rw~pGtl 108 (249)
T PTZ00254 50 NLAKTWEKLKLAARVIAA-IENP--------ADVVVVSSRPY---GQRAV--------LKFAQ-YTGASAIAGRFTPGTF 108 (249)
T ss_pred cHHHHHHHHHHHHHHHHH-HhCC--------CcEEEEEcCHH---HHHHH--------HHHHH-HhCCeEECCcccCCCC
Confidence 577888888777766542 2233 56777766542 22221 22222 23433221 123322
Q ss_pred cc-cCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcc
Q psy1915 122 LD-RNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHIN 182 (361)
Q Consensus 122 ~~-~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~ 182 (361)
.. ........|++|++....+ ..+++.|...|++||+|++. +|++.. .|+.|+.+
T Consensus 109 TN~~~~~f~~P~llIV~Dp~~d----~qAI~EA~~lnIPvIal~DT-ds~p~~-VDy~IP~N 164 (249)
T PTZ00254 109 TNQIQKKFMEPRLLIVTDPRTD----HQAIREASYVNIPVIALCDT-DSPLEY-VDIAIPCN 164 (249)
T ss_pred CCccccccCCCCEEEEeCCCcc----hHHHHHHHHhCCCEEEEecC-CCCccc-CceeeCCC
Confidence 11 1123356678888765443 45677788889999999976 666544 67766543
No 123
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=87.44 E-value=3.6 Score=42.48 Aligned_cols=125 Identities=18% Similarity=0.269 Sum_probs=66.6
Q ss_pred CCCEEEEE-cCCCCc-HHHHHHHHHHHHcCCeEEEEEcCCC----------------CccccccCeeEEcccCCCccccc
Q psy1915 130 RDDVCFFI-SQSGET-ADSLMALRYCKARGALIVGVTNTVG----------------SSISRESHCGIHINAGPEIGVAS 191 (361)
Q Consensus 130 ~~dlvI~i-S~SG~t-~e~~~a~~~ak~~g~~~i~IT~~~~----------------S~la~~ad~~l~~~~~~e~~~~~ 191 (361)
.-|++|.+ ++.+++ +.....++.||++|+++|.|--... +..++.||..+.+..|.+..
T Consensus 163 ~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~~gl~~f~~p~~~~~~lt~~a~~Ad~~l~irPGtD~A--- 239 (574)
T cd02767 163 HTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLREPGLERFANPQNPESMLTGGTKIADEYFQVRIGGDIA--- 239 (574)
T ss_pred cCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCccccccccccccccccccccchhhhCeeeCCCCCcHHH---
Confidence 34666655 445554 4567778889999999999966433 13467788888775543311
Q ss_pred chhHHHHHHHHHHHHHHHhhh----hcchHHH-------HHHHHHHHHHH-HHHHHHHHc-ccHHHHHHHHHHhcCCe-E
Q psy1915 192 TKAYTSQFISLVMFALVMCED----RISLQTR-------RNEIIKGLKVI-HEQIREVLQ-MDSEVQQLAKEMYEQKS-M 257 (361)
Q Consensus 192 t~s~t~~~~~l~~l~~~~~~~----~~~~~~~-------~~~~~~~l~~l-~~~~~~~l~-~~~~~~~~a~~l~~~~~-i 257 (361)
+. +-++-..+... ..-..+. ++++.+.++.. ++.+.+.-. ..+.++++|+.+...++ +
T Consensus 240 ---L~-----~gl~k~li~~~~~~~~~~D~~Fi~~~t~Gfd~~~~~l~~~t~e~~~~~tGv~~e~I~~~A~~~a~a~~~i 311 (574)
T cd02767 240 ---LL-----NGMAKHLIERDDEPGNVLDHDFIAEHTSGFEEYVAALRALSWDEIERASGLSREEIEAFAAMYAKSERVV 311 (574)
T ss_pred ---HH-----HHHHHHHHhCccccCCCcCHHHHHHHccCHHHHHHHHHcCCHHHHHhHhCcCHHHHHHHHHHHHhCCCEE
Confidence 11 11111111110 0000111 23333333332 233333332 35678999999988765 4
Q ss_pred EEEeccCC
Q psy1915 258 LLMGRGYN 265 (361)
Q Consensus 258 ~~iG~G~~ 265 (361)
++.|.|..
T Consensus 312 i~~g~Gi~ 319 (574)
T cd02767 312 FVWGMGIT 319 (574)
T ss_pred EEecchhc
Confidence 55577754
No 124
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=87.30 E-value=3.7 Score=39.27 Aligned_cols=118 Identities=18% Similarity=0.208 Sum_probs=77.1
Q ss_pred ccHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCc---------------cCCC
Q psy1915 240 MDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALI---------------DNSM 304 (361)
Q Consensus 240 ~~~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i---------------~~~~ 304 (361)
+++.+++-|+.|.++++..+.|-+....-|++.++++-|... +.--+...+.|||..+- ++.+
T Consensus 65 ~deAie~Aa~ILv~aKrPllyg~s~tscEA~~~gielaE~~g--aviD~~asvchGp~~~alqe~g~p~~TlgevKNraD 142 (429)
T COG1029 65 YDEAIEKAAEILVNAKRPLLYGWSSTSCEAQELGIELAEKLG--AVIDSNASVCHGPSVLALQEAGKPTATLGEVKNRAD 142 (429)
T ss_pred HHHHHHHHHHHHHhccCceEeccccchHHHHHHHHHHHHHhC--cEecCCCccccchHHHHHHhcCCcccchhhhccccc
Confidence 455677888889998887777888899999999999999765 55556678999987532 1224
Q ss_pred cEEEEEcCC-ccHHHHHHH----HHH-HHHc--CCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 305 PVIMILTRD-PVYVKCMNA----LLQ-VIAR--DGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 305 ~vi~i~~~g-~~~~~~~~~----~~~-~~~~--g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
++++-.... .+.+|-... .+- .++| -.+++.+.+...+.-++++|.++.+++..|
T Consensus 143 viVyWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TAklad~~~qi~p~sD 205 (429)
T COG1029 143 VIVYWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATAKLADNHVQIKPNSD 205 (429)
T ss_pred EEEEeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcCchhhhhhheEecCCCCc
Confidence 444433221 122232221 111 2333 356666666655677788999999987655
No 125
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=86.25 E-value=23 Score=31.22 Aligned_cols=110 Identities=14% Similarity=0.139 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHhhhhccCccceeeeccCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEE--Eecccc
Q psy1915 44 HLARHIAIMEGAFALCFKSKLFPGECVATRRGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMV--ELASDF 121 (361)
Q Consensus 44 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~--~~~~e~ 121 (361)
.+.++...|..|...+.... .++++++|....+ ++.. +.+.+ ..|-.... +.+..+
T Consensus 41 dL~kT~~~L~~A~~~i~~i~----------~~~ILfVgtk~~~---~~~V--------~~~A~-~~g~~~v~~RWlgGtL 98 (196)
T TIGR01012 41 DLRKTDERLRVAAKFLVRIE----------PEDILVVSARIYG---QKPV--------LKFAK-VTGARAIAGRFTPGTF 98 (196)
T ss_pred cHHHHHHHHHHHHHHHHHhh----------CCeEEEEecCHHH---HHHH--------HHHHH-HhCCceECCeeCCCCC
Confidence 57788888888777664211 3577777765432 1111 22222 23332211 122222
Q ss_pred cc-cCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEc
Q psy1915 122 LD-RNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHI 181 (361)
Q Consensus 122 ~~-~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~ 181 (361)
.. ........|++|++....+ ..|++.|+..|++||+|++. +++. +..|+.|+.
T Consensus 99 TN~~~~~~~~Pdlliv~dp~~~----~~Av~EA~~l~IP~Iai~DT-n~dp-~~vdypIP~ 153 (196)
T TIGR01012 99 TNPMQKAFREPEVVVVTDPRAD----HQALKEASEVGIPIVALCDT-DNPL-RYVDLVIPT 153 (196)
T ss_pred CCccccccCCCCEEEEECCccc----cHHHHHHHHcCCCEEEEeeC-CCCC-ccCCEEECC
Confidence 11 1122456688888765444 45777788899999999986 4443 346676654
No 126
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=86.23 E-value=3.3 Score=41.97 Aligned_cols=123 Identities=18% Similarity=0.224 Sum_probs=66.6
Q ss_pred CCCEEEEE-cCCCCc-HHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccCCCcccccchhHHHHHHHHHHHHH
Q psy1915 130 RDDVCFFI-SQSGET-ADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFAL 207 (361)
Q Consensus 130 ~~dlvI~i-S~SG~t-~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~~~~t~s~t~~~~~l~~l~~ 207 (361)
.-|++|.+ ++...+ +.....+..+|++|+++|.|-. ..|+.++.||..|.+..|.+.. . ++.++-.
T Consensus 157 ~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDP-r~t~ta~~Ad~~l~i~PGtD~a-------l----~~al~~~ 224 (501)
T cd02766 157 NADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDP-YRTATAARADLHIQIRPGTDGA-------L----ALGVAKV 224 (501)
T ss_pred cCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECC-CCCccHHHhCeeeccCCCcHHH-------H----HHHHHHH
Confidence 44565555 444432 3445666778999999998855 5799999999999886543311 1 1111111
Q ss_pred HHhhhhcchHHH-------HHHHHHHHHHH-HHHHHHHHc-ccHHHHHHHHHHhcCC-eEEEEeccCC
Q psy1915 208 VMCEDRISLQTR-------RNEIIKGLKVI-HEQIREVLQ-MDSEVQQLAKEMYEQK-SMLLMGRGYN 265 (361)
Q Consensus 208 ~~~~~~~~~~~~-------~~~~~~~l~~l-~~~~~~~l~-~~~~~~~~a~~l~~~~-~i~~iG~G~~ 265 (361)
.+.....+ .+. ++++.+.++.. |+.+.++-. ..+.++++|+.+...+ .+++.|.|..
T Consensus 225 ii~~~~~d-~~fv~~~t~gf~~~~~~v~~~t~e~~~~~tgv~~~~I~~~A~~~a~~~~~~i~~g~g~~ 291 (501)
T cd02766 225 LFREGLYD-RDFLARHTEGFEELKAHLETYTPEWAAEITGVSAEEIEELARLYGEAKPPSIRLGYGMQ 291 (501)
T ss_pred HHHCCCcc-HHHHHHhcCCHHHHHHHHhhCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEecchhh
Confidence 11111100 111 22233322221 344444433 3456889999998754 4566677744
No 127
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=85.26 E-value=4.2 Score=42.04 Aligned_cols=119 Identities=13% Similarity=0.074 Sum_probs=60.7
Q ss_pred ccHHHHHHHHHHhcC--CeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCc-----------------cCc
Q psy1915 240 MDSEVQQLAKEMYEQ--KSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPL-----------------ALI 300 (361)
Q Consensus 240 ~~~~~~~~a~~l~~~--~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~-----------------~~i 300 (361)
|++.++.+|+.+... +.+.++++|....-+.....+|....+.+-. .....+.|.+. .-+
T Consensus 83 WDEAl~~IA~kL~~~~~~~~~~y~sg~~snE~~~l~q~f~r~lGt~n~-~~~s~~C~~~~~~al~~~~G~~~~t~~~~Di 161 (574)
T cd02767 83 WDEAFAEIAARLRALDPDRAAFYTSGRASNEAAYLYQLFARAYGTNNL-PDCSNMCHEPSSVGLKKSIGVGKGTVSLEDF 161 (574)
T ss_pred HHHHHHHHHHHHhhhCCCcEEEEecCCCccHHHHHHHHHHHHhCCCCc-CCCCCCcchHHHhHHHHhcCCCCCCCCHHHH
Confidence 444455555555543 5566666664332222333455554443211 11234444221 111
Q ss_pred cCCCcEEEEEcC-CccHHHHHHHHHHHHHcCCcEEEEecCCCc----------------hhhhcccceEEcCCCCC
Q psy1915 301 DNSMPVIMILTR-DPVYVKCMNALLQVIARDGRPIVICEKGDT----------------ETQALATKTLEVPHTVD 359 (361)
Q Consensus 301 ~~~~~vi~i~~~-g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~----------------~~~~~~d~~i~~p~~~~ 359 (361)
..-.++|++..+ ..+..++...+++++++|+++|+|-...+. ..++.+|..+.+.+..|
T Consensus 162 ~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~~gl~~f~~p~~~~~~lt~~a~~Ad~~l~irPGtD 237 (574)
T cd02767 162 EHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLREPGLERFANPQNPESMLTGGTKIADEYFQVRIGGD 237 (574)
T ss_pred hcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCccccccccccccccccccccchhhhCeeeCCCCCcH
Confidence 122444444333 334456777788889999999988765431 22456777776655443
No 128
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=84.30 E-value=20 Score=36.00 Aligned_cols=56 Identities=13% Similarity=0.036 Sum_probs=38.2
Q ss_pred CCCCEEEEEcCC-CCc-H-HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccCC
Q psy1915 129 FRDDVCFFISQS-GET-A-DSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGP 185 (361)
Q Consensus 129 ~~~dlvI~iS~S-G~t-~-e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~ 185 (361)
.+-|++|.+... -.| + .....+..+|++|+++|.|-.+ .|..+..||..|.+..|.
T Consensus 159 ~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr-~s~ta~~Ad~~l~i~PGt 217 (477)
T cd02759 159 ENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPR-LTWLAARADLWLPIRPGT 217 (477)
T ss_pred hcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCC-CChhhHhhCeeeccCCCc
Confidence 345666655433 333 2 4455666788899999988655 688899999988876543
No 129
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=83.73 E-value=9.5 Score=40.79 Aligned_cols=125 Identities=18% Similarity=0.216 Sum_probs=66.5
Q ss_pred CCCEEEEE-cCCCCc-HHHHHHHHHHHHcCCeEEEEEcCCCC-----------------ccccccCeeEEcccCCCcccc
Q psy1915 130 RDDVCFFI-SQSGET-ADSLMALRYCKARGALIVGVTNTVGS-----------------SISRESHCGIHINAGPEIGVA 190 (361)
Q Consensus 130 ~~dlvI~i-S~SG~t-~e~~~a~~~ak~~g~~~i~IT~~~~S-----------------~la~~ad~~l~~~~~~e~~~~ 190 (361)
.-|++|.+ ++.+++ +.....++.||++|+++|.|--...- .-++.||..+.+..|.+..+
T Consensus 198 ~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~~~l~rf~~p~~~~~~~t~~~a~~Ad~~l~irPGtD~AL- 276 (743)
T TIGR01701 198 HTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRERGLERFWIPQIPESMLTGGGTQISSEYYQVRIGGDIAL- 276 (743)
T ss_pred hCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCcccccccccccccchhccccchHhhCeeecCCCCcHHHH-
Confidence 34666666 555655 45667788899999999999543211 11678898887765433111
Q ss_pred cchhHHHHHHHHHHHHHHHhhhh-----cchHHH-------HHHHHHHHHHH-HHHHHHHHc-ccHHHHHHHHHHhcCCe
Q psy1915 191 STKAYTSQFISLVMFALVMCEDR-----ISLQTR-------RNEIIKGLKVI-HEQIREVLQ-MDSEVQQLAKEMYEQKS 256 (361)
Q Consensus 191 ~t~s~t~~~~~l~~l~~~~~~~~-----~~~~~~-------~~~~~~~l~~l-~~~~~~~l~-~~~~~~~~a~~l~~~~~ 256 (361)
. +-++-..+.... .-..+. ++++.+.+... ++.+++.-. ..+.++++|+.+...++
T Consensus 277 -----~-----~g~~~~li~~~~~~~~~~~D~~Fi~~~t~Gfe~l~~~v~~~t~e~~~~~tGv~~~~I~~~A~~~a~a~~ 346 (743)
T TIGR01701 277 -----F-----NGVMKLLIEAEDAQPGSLIDHEFIANHTNGFDELRRHVLQLNWNDIERSSGLSQEEILEFAKLLANSRR 346 (743)
T ss_pred -----H-----HHHHHHHHHCCCccccccccHHHHHHhcchHHHHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHHhCCC
Confidence 1 111111111110 000111 23333333322 333333333 35678999999988764
Q ss_pred -EEEEeccCC
Q psy1915 257 -MLLMGRGYN 265 (361)
Q Consensus 257 -i~~iG~G~~ 265 (361)
+++.|.|..
T Consensus 347 ~~i~~g~G~~ 356 (743)
T TIGR01701 347 VVFCWAMGLT 356 (743)
T ss_pred EEEEECcccc
Confidence 566688865
No 130
>COG0166 Pgi Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=83.54 E-value=9.1 Score=38.18 Aligned_cols=114 Identities=11% Similarity=0.080 Sum_probs=67.8
Q ss_pred HHHHHHHHHhc--CCeEEEEeccCCHHHHHHHHHHHHHhhCc-ceEEEe---cCCccccCccCccCC-CcEEEEEcCCcc
Q psy1915 243 EVQQLAKEMYE--QKSMLLMGRGYNYATCMEGALKIKELTYM-HSEGIM---AGELKHGPLALIDNS-MPVIMILTRDPV 315 (361)
Q Consensus 243 ~~~~~a~~l~~--~~~i~~iG~G~~~~~A~e~alkl~E~~~~-~a~~~~---~~E~~Hgp~~~i~~~-~~vi~i~~~g~~ 315 (361)
.+++++..+.. .+.++.+|-|.|+--.+-...-+.....- +-..|. .+...+-.+..++++ +.+++++-+|.|
T Consensus 66 ~~~~f~~~~~~g~~~~IV~IGIGGS~LG~~~~~~aL~~~~~~~~~~~Fv~nid~~~~~~~l~~i~~~~tl~iviSKSGtT 145 (446)
T COG0166 66 RMKAFADDVRSGKITDIVNIGIGGSDLGPRAVTEALRPYAPNGPRVHFVSNVDPTYLAEVLKKLDPETTLFIVISKSGTT 145 (446)
T ss_pred HHHHHHhhcccCccceEEEeCCchhHHHHHHHHHHhhhhccCCCceEEecCCCchhhhHHHhccCcccEEEEEEeCCCCc
Confidence 34555555543 68899999999987777655555555441 122222 334444455556644 777777778888
Q ss_pred HHHHHHHHHHHHHcC-------CcEEEEecCCCchhhhcc----cceEEcCCC
Q psy1915 316 YVKCMNALLQVIARD-------GRPIVICEKGDTETQALA----TKTLEVPHT 357 (361)
Q Consensus 316 ~~~~~~~~~~~~~~g-------~~~v~I~~~~~~~~~~~~----d~~i~~p~~ 357 (361)
. +++...+.+++.. .+.+++++.....+.+.+ ..++.+|..
T Consensus 146 ~-Et~~n~~~~r~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~f~ipd~ 197 (446)
T COG0166 146 L-ETLTNFRLARKWLEKKEEAAKKHFVATSTNGGALAVLAGENGLETFEIPDW 197 (446)
T ss_pred H-HHHHHHHHHHHHHHhhhhhhhcEEEEEcCCchHHHHhcCCCceeEEECCCC
Confidence 6 4555555555443 556666666555554233 557888764
No 131
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=83.24 E-value=8.6 Score=41.11 Aligned_cols=119 Identities=12% Similarity=0.070 Sum_probs=64.0
Q ss_pred ccHHHHHHHHHHhcC--CeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCc-----------------cCc
Q psy1915 240 MDSEVQQLAKEMYEQ--KSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPL-----------------ALI 300 (361)
Q Consensus 240 ~~~~~~~~a~~l~~~--~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~-----------------~~i 300 (361)
|++.++.+|+.+... +.+.+.++|....-+.....+|....+.+-. .....+.|.+- .-+
T Consensus 118 WdEAl~~IA~kL~~~~p~~i~~y~sg~~s~e~~~~~~~f~r~lGt~n~-~~~s~~C~~~~~~al~~~~G~~~~t~~~~Di 196 (743)
T TIGR01701 118 WDDAYQEIAAKLNSLDPKQVAFYTSGRTSNEAAYLYQLFARSLGSNNL-PDCSNMCHEPSSVALKRSIGIGKGSVNLEDF 196 (743)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHHHhCCCCc-CCCcccccchhhHHHHHhcCCCCCCCCHhHH
Confidence 555566666666653 5676677665433333334455554332211 11223444221 111
Q ss_pred cCCCcEEEEEcC-CccHHHHHHHHHHHHHcCCcEEEEecCCCch-----------------hhhcccceEEcCCCCC
Q psy1915 301 DNSMPVIMILTR-DPVYVKCMNALLQVIARDGRPIVICEKGDTE-----------------TQALATKTLEVPHTVD 359 (361)
Q Consensus 301 ~~~~~vi~i~~~-g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~-----------------~~~~~d~~i~~p~~~~ 359 (361)
..-.++|++..+ +.+..++...+++++++|+++|+|-...+.- -++.+|..+.+.++.|
T Consensus 197 ~~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~~~l~rf~~p~~~~~~~t~~~a~~Ad~~l~irPGtD 273 (743)
T TIGR01701 197 EHTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRERGLERFWIPQIPESMLTGGGTQISSEYYQVRIGGD 273 (743)
T ss_pred HhCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCcccccccccccccchhccccchHhhCeeecCCCCcH
Confidence 223445555433 3445667777888889999999886644321 1456788777766554
No 132
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=82.10 E-value=16 Score=37.05 Aligned_cols=124 Identities=14% Similarity=0.184 Sum_probs=67.0
Q ss_pred CCCCEEEEEcCC--CCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccCCCcccccchhHHHHHHHHHHHH
Q psy1915 129 FRDDVCFFISQS--GETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFA 206 (361)
Q Consensus 129 ~~~dlvI~iS~S--G~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~~~~t~s~t~~~~~l~~l~ 206 (361)
.+-|++|.+... .+.+.....++.++++|+++|.|-.. .|+.+..||..|.+..|.+.. . ++.++-
T Consensus 155 ~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~-~s~ta~~Ad~~l~i~PGtD~a-------l----~lal~~ 222 (512)
T cd02753 155 EEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPR-RTELARFADLHLQLRPGTDVA-------L----LNAMAH 222 (512)
T ss_pred HhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCC-CccchHhhCeeeCCCCCcHHH-------H----HHHHHH
Confidence 345677766543 22334446667788999999999866 577888999988876553311 1 111111
Q ss_pred HHHhhhhcchHHH-------HHHHHHHHHHH-HHHHHHHHc-ccHHHHHHHHHHhcCC-eEEEEeccCC
Q psy1915 207 LVMCEDRISLQTR-------RNEIIKGLKVI-HEQIREVLQ-MDSEVQQLAKEMYEQK-SMLLMGRGYN 265 (361)
Q Consensus 207 ~~~~~~~~~~~~~-------~~~~~~~l~~l-~~~~~~~l~-~~~~~~~~a~~l~~~~-~i~~iG~G~~ 265 (361)
..+.....+ .+. ++++.+.++.. |+.+.+.-. ..+.++++|+.+...+ .+++.|.|..
T Consensus 223 ~l~~~~~~d-~~fv~~~t~gf~~~~~~~~~~t~e~~~~~~gv~~~~i~~lA~~~~~~~~~~i~~g~g~~ 290 (512)
T cd02753 223 VIIEEGLYD-EEFIEERTEGFEELKEIVEKYTPEYAERITGVPAEDIREAARMYATAKSAAILWGMGVT 290 (512)
T ss_pred HHHHCCCcC-HHHHHHHhhhHHHHHHHHHhCCHHHHHHHhCcCHHHHHHHHHHHHhCCCeEEEeCchhh
Confidence 111111110 111 12222222222 333333332 2356889999998764 5666687754
No 133
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=80.52 E-value=13 Score=33.05 Aligned_cols=111 Identities=12% Similarity=0.098 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHhhhhccCccceeeeccCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEE--Eecccc
Q psy1915 44 HLARHIAIMEGAFALCFKSKLFPGECVATRRGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMV--ELASDF 121 (361)
Q Consensus 44 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~--~~~~e~ 121 (361)
.+.++...|..|...+.. . ..|+++++|....+ ++.. +.+.++ .|..... +.+..+
T Consensus 47 dL~kT~~~L~~A~~~i~~-~---------~~~~ILfVgTk~~~---~~~v--------~k~A~~-~g~~~v~~RWlgG~L 104 (204)
T PRK04020 47 DVRKTDERIRIAAKFLSR-Y---------EPEKILVVSSRQYG---QKPV--------QKFAEV-VGAKAITGRFIPGTL 104 (204)
T ss_pred cHHHHHHHHHHHHHHHHH-h---------cCCeEEEEeCCHHH---HHHH--------HHHHHH-hCCeeecCccCCCcC
Confidence 677888888877776542 1 23677778665422 1111 122222 3332211 122222
Q ss_pred cc-cCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcc
Q psy1915 122 LD-RNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHIN 182 (361)
Q Consensus 122 ~~-~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~ 182 (361)
.. ........|++|++....+ ..|++.|+..|++||+|++.. ++. ++.|+.|+.+
T Consensus 105 TN~~~~~~~~Pdliiv~dp~~~----~~AI~EA~kl~IP~IaivDTn-~dp-~~VdypIP~N 160 (204)
T PRK04020 105 TNPSLKGYIEPDVVVVTDPRGD----AQAVKEAIEVGIPVVALCDTD-NLT-SNVDLVIPTN 160 (204)
T ss_pred cCcchhccCCCCEEEEECCccc----HHHHHHHHHhCCCEEEEEeCC-CCc-ccCceeECCC
Confidence 10 1112235688888887665 567777888999999999874 444 4567766543
No 134
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=79.83 E-value=8 Score=40.65 Aligned_cols=123 Identities=16% Similarity=0.182 Sum_probs=67.0
Q ss_pred CCCEEEEEcC-CC-CcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccCCCcccccchhHHHHHHHHHHHHH
Q psy1915 130 RDDVCFFISQ-SG-ETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFAL 207 (361)
Q Consensus 130 ~~dlvI~iS~-SG-~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~~~~t~s~t~~~~~l~~l~~ 207 (361)
+-|++|.+-. .. +.+.....++.|+++|+++|.|-. ..|..+..+|..|.+..|.+.. . ++.++-.
T Consensus 155 ~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp-~~s~ta~~ad~~i~i~Pgtd~a-------l----~lal~~~ 222 (671)
T TIGR01591 155 NADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDP-RKTETAKIADLHIPLKPGTDIA-------L----LNAMANV 222 (671)
T ss_pred hCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECC-CCChhhHhhCcccCCCCCcHHH-------H----HHHHHHH
Confidence 4467666633 22 233456777888899999999954 4688889999988876543311 1 1112222
Q ss_pred HHhhhhcchHHH-------HHHHHHHHHH-HHHHHHHHHc-ccHHHHHHHHHHhcCCe-EEEEeccCC
Q psy1915 208 VMCEDRISLQTR-------RNEIIKGLKV-IHEQIREVLQ-MDSEVQQLAKEMYEQKS-MLLMGRGYN 265 (361)
Q Consensus 208 ~~~~~~~~~~~~-------~~~~~~~l~~-l~~~~~~~l~-~~~~~~~~a~~l~~~~~-i~~iG~G~~ 265 (361)
.+.....+ .+. ++++.+.++. -|+...+... ..+.++++|+.+...++ +++.|.|..
T Consensus 223 li~~~~~d-~~f~~~~t~gf~~~~~~~~~~t~e~~a~~~gv~~~~i~~lA~~l~~~~~~~i~~g~g~~ 289 (671)
T TIGR01591 223 IIEEGLYD-KAFIEKRTEGFEEFREIVKGYTPEYVEDITGVPADLIREAARMYAKAGSAAILWGMGVT 289 (671)
T ss_pred HHHCCCcC-HHHHHHHhhCHHHHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHhhCCCeEEEecCccc
Confidence 22221111 111 1222222211 1333333333 24568899999988764 677777754
No 135
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=79.32 E-value=6.8 Score=40.81 Aligned_cols=107 Identities=15% Similarity=0.189 Sum_probs=59.2
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCCCccccccC-eeEEcccCCCcccccchhHHHHHHHHHHHHHHHhhhhcchHHH-----
Q psy1915 146 SLMALRYCKARGALIVGVTNTVGSSISRESH-CGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTR----- 219 (361)
Q Consensus 146 ~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad-~~l~~~~~~e~~~~~t~s~t~~~~~l~~l~~~~~~~~~~~~~~----- 219 (361)
....+..+|++|+++|.|--+ .|+.++.+| ..|.+..|.+ ...+ +.++-+.+.....+ .+.
T Consensus 197 ~~~~~~~ar~~GaklIvIDPr-~t~tA~~add~~l~irPGTD-------~ALa----lam~~~ii~e~~~D-~~Fv~~~t 263 (609)
T cd02769 197 AYSYLKALKDRGIRFISISPL-RDDTAAELGAEWIAIRPGTD-------VALM----LALAHTLVTEGLHD-KAFLARYT 263 (609)
T ss_pred hHHHHHHHHhCCCEEEEEcCC-CCcchhhhcCcEeccCCCcH-------HHHH----HHHHHHHHHcCCcc-HHHHHHHc
Confidence 345677789999999988865 688888886 6777765433 1111 11111111111100 111
Q ss_pred --HHHHHHHHH-------HHHHHHHHHHc-ccHHHHHHHHHHhcCCeEEEEeccCC
Q psy1915 220 --RNEIIKGLK-------VIHEQIREVLQ-MDSEVQQLAKEMYEQKSMLLMGRGYN 265 (361)
Q Consensus 220 --~~~~~~~l~-------~l~~~~~~~l~-~~~~~~~~a~~l~~~~~i~~iG~G~~ 265 (361)
++++.+.+. .-|+.+.++-. ..+.++++|+.+...+.+++.|.|..
T Consensus 264 ~Gfe~~~~~l~~~~dg~~~tpe~aa~itGV~ae~I~~lA~~~a~~~~~i~~g~g~~ 319 (609)
T cd02769 264 VGFDKFLPYLLGESDGVPKTPEWAAAICGIPAETIRELARRFASKRTMIMAGWSLQ 319 (609)
T ss_pred cCHHHHHHHhcCCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHhhcCcEEEecccch
Confidence 222333332 12444444443 35679999999987666667777643
No 136
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=79.05 E-value=6.4 Score=40.25 Aligned_cols=104 Identities=17% Similarity=0.232 Sum_probs=57.9
Q ss_pred HHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccCCCcccccchhHHHHHHHHHHHHHHHhhhhcchHHH-------HH
Q psy1915 149 ALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTR-------RN 221 (361)
Q Consensus 149 a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~~~~t~s~t~~~~~l~~l~~~~~~~~~~~~~~-------~~ 221 (361)
.++.+|++|+++|.|-- ..|+.++.||..|.+..|.+ ... ++.++-..+.....+ .+. ++
T Consensus 183 ~~~~a~~~G~kliviDP-r~t~ta~~AD~~l~irPGtD-------~aL----~~a~~~~ii~~~~~D-~~fi~~~t~Gf~ 249 (539)
T cd02762 183 RLKAAKDRGGSLVVIDP-RRTETAKLADEHLFVRPGTD-------AWL----LAAMLAVLLAEGLTD-RRFLAEHCDGLD 249 (539)
T ss_pred HHHHHHhCCCEEEEECC-CCchhhHhcCEeeCcCCCcH-------HHH----HHHHHHHHHHCCCCC-hHHHHHHcCcHH
Confidence 56678899999998865 47888999999998865433 111 111111112111111 111 22
Q ss_pred HHHHHHHHH-HHHHHHHHc-ccHHHHHHHHHHhcCCe-EEEEeccCC
Q psy1915 222 EIIKGLKVI-HEQIREVLQ-MDSEVQQLAKEMYEQKS-MLLMGRGYN 265 (361)
Q Consensus 222 ~~~~~l~~l-~~~~~~~l~-~~~~~~~~a~~l~~~~~-i~~iG~G~~ 265 (361)
++.+.++.. |+.+.++-. ..+.++++|+.+...++ +++.|.|..
T Consensus 250 ~~~~~~~~~t~e~~~~~tGv~~~~I~~lA~~~a~~~~~~i~~g~G~~ 296 (539)
T cd02762 250 EVRAALAEFTPEAYAPRCGVPAETIRRLAREFAAAPSAAVYGRLGVQ 296 (539)
T ss_pred HHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHhcCCceEEEECcccc
Confidence 333333222 344444433 34678999999987654 555677754
No 137
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=77.79 E-value=20 Score=30.56 Aligned_cols=44 Identities=14% Similarity=0.043 Sum_probs=34.3
Q ss_pred HHHHHHHhcC-CeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEe
Q psy1915 245 QQLAKEMYEQ-KSMLLMGRGYNYATCMEGALKIKELTYMHSEGIM 288 (361)
Q Consensus 245 ~~~a~~l~~~-~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~ 288 (361)
+++++.+.++ ++++++|.|....-+.+...++.|..++|+..-.
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~ 62 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATA 62 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcC
Confidence 4455556655 6788899999888888899999999998876554
No 138
>PRK09939 putative oxidoreductase; Provisional
Probab=77.63 E-value=16 Score=39.24 Aligned_cols=55 Identities=20% Similarity=0.296 Sum_probs=36.7
Q ss_pred CCCEEEEE-cCCCCc-HHHHHHHHHHHHcCCeEEEEEcCCC----------C-------ccccccCeeEEcccC
Q psy1915 130 RDDVCFFI-SQSGET-ADSLMALRYCKARGALIVGVTNTVG----------S-------SISRESHCGIHINAG 184 (361)
Q Consensus 130 ~~dlvI~i-S~SG~t-~e~~~a~~~ak~~g~~~i~IT~~~~----------S-------~la~~ad~~l~~~~~ 184 (361)
.-|++|.+ ++.+++ +.+...++.++++|+++|.|--... + +-++.||..+.+..|
T Consensus 208 ~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~~gl~rft~p~~~~~~~~~~ta~~Ad~~l~irPG 281 (759)
T PRK09939 208 KCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQERGLERFTAPQNPFEMLTNSETQLASAYYNVRIG 281 (759)
T ss_pred hCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCcccccccccccccchhccccchhhhCeeeCCCCC
Confidence 45666666 555654 3466677889999999999865331 1 136788988877654
No 139
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=76.78 E-value=13 Score=37.01 Aligned_cols=58 Identities=17% Similarity=0.117 Sum_probs=39.4
Q ss_pred CCCCCEEEEEc-CCCCcH--HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccCCC
Q psy1915 128 VFRDDVCFFIS-QSGETA--DSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE 186 (361)
Q Consensus 128 ~~~~dlvI~iS-~SG~t~--e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e 186 (361)
+.+-|++|.+- .--++. .....+..+|++|+++|.|-.+ .|+.++.||..|.+..|.+
T Consensus 154 ~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr-~t~ta~~AD~~i~i~PGtD 214 (454)
T cd02755 154 FENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPR-FSELASKADEWIPIKPGTD 214 (454)
T ss_pred hhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCC-CChhhHhhCEecCCCCCcH
Confidence 34456776664 333442 1345566788899999888765 6889999999887765433
No 140
>PRK09939 putative oxidoreductase; Provisional
Probab=75.47 E-value=14 Score=39.63 Aligned_cols=118 Identities=12% Similarity=0.076 Sum_probs=62.3
Q ss_pred ccHHHHHHHHHHhc---CCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEE-ecCCccccCcc-----------------
Q psy1915 240 MDSEVQQLAKEMYE---QKSMLLMGRGYNYATCMEGALKIKELTYMHSEGI-MAGELKHGPLA----------------- 298 (361)
Q Consensus 240 ~~~~~~~~a~~l~~---~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~-~~~E~~Hgp~~----------------- 298 (361)
|++.++.+++.|.. .+.+.+.++|....-+.....+|....+. ..+ ....+.|.+..
T Consensus 127 WdEAl~~Ia~~L~~i~~p~~i~~y~sg~~snE~~yl~q~f~r~~Gt--nn~~~~s~~C~~~~~~~l~~~~G~g~~t~~l~ 204 (759)
T PRK09939 127 WQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAAFLYQLFAREYGS--NNFPDCSNMCHEPTSVGLAASIGVGKGTVLLE 204 (759)
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeeCCchHHHHHHHHHHHHHhCC--cccCCCCCCCchHHHHHHHHhcCCCCCCCCHH
Confidence 33344444444433 45666777776654444445566664432 222 22345553211
Q ss_pred CccCCCcEEEEEcC-CccHHHHHHHHHHHHHcCCcEEEEecCCCc-----------------hhhhcccceEEcCCCCC
Q psy1915 299 LIDNSMPVIMILTR-DPVYVKCMNALLQVIARDGRPIVICEKGDT-----------------ETQALATKTLEVPHTVD 359 (361)
Q Consensus 299 ~i~~~~~vi~i~~~-g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~-----------------~~~~~~d~~i~~p~~~~ 359 (361)
-++.-.++|++..+ +++.+++...+++++++|+++|+|-...+. .-++.+|..+.+.++.|
T Consensus 205 Di~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~~gl~rft~p~~~~~~~~~~ta~~Ad~~l~irPGtD 283 (759)
T PRK09939 205 DFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQERGLERFTAPQNPFEMLTNSETQLASAYYNVRIGGD 283 (759)
T ss_pred HHhhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCcccccccccccccchhccccchhhhCeeeCCCCChH
Confidence 11222344444333 334456667777788899999888764421 02466788877766544
No 141
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=75.42 E-value=5.6 Score=31.55 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=36.7
Q ss_pred EEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCc--cccccCeeEEccc
Q psy1915 135 FFISQSGETADSLMALRYCKARGALIVGVTNTVGSS--ISRESHCGIHINA 183 (361)
Q Consensus 135 I~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~--la~~ad~~l~~~~ 183 (361)
|.|-.+|+. .+++++.+|+.|.++|+|-+++++. -...||..+..+.
T Consensus 5 vLIanrGei--a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~ 53 (110)
T PF00289_consen 5 VLIANRGEI--AVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPP 53 (110)
T ss_dssp EEESS-HHH--HHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEES
T ss_pred EEEECCCHH--HHHHHHHHHHhCCcceeccCchhcccccccccccceecCc
Confidence 345566655 8999999999999999999998854 4667998887763
No 142
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=75.35 E-value=9.2 Score=41.03 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=58.8
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCCCccccc-cCeeEEcccCCCcccccchhHHHHHHHHHHHHHHHhhhhcchHHH-----
Q psy1915 146 SLMALRYCKARGALIVGVTNTVGSSISRE-SHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTR----- 219 (361)
Q Consensus 146 ~~~a~~~ak~~g~~~i~IT~~~~S~la~~-ad~~l~~~~~~e~~~~~t~s~t~~~~~l~~l~~~~~~~~~~~~~~----- 219 (361)
....++.||++|+++|.|--+ -|+.++. +|..|.+..|.+. .. ++.++-+.+.....+ .+.
T Consensus 193 ~~~~~~~a~~~G~klIvIDPr-~t~tA~~aaD~~l~irPGTD~-------AL----~lam~~~ii~e~l~D-~~fi~~~t 259 (770)
T TIGR00509 193 GYEYLERLKAKGKRVISIDPV-RTETAEFFGAEWIPPNPQTDV-------AL----MLGLAHTLVTEGLYD-KDFLAKYT 259 (770)
T ss_pred hHHHHHHHHHcCCEEEEEcCC-CCcchhhccCeEeCcCCCcHH-------HH----HHHHHHHHHHccccc-HHHHHHHc
Confidence 446677789999999988765 6778887 4888877654331 11 111111111111100 111
Q ss_pred --HHHHHHHHH-------HHHHHHHHHHc-ccHHHHHHHHHHhcCCeEEEEeccC
Q psy1915 220 --RNEIIKGLK-------VIHEQIREVLQ-MDSEVQQLAKEMYEQKSMLLMGRGY 264 (361)
Q Consensus 220 --~~~~~~~l~-------~l~~~~~~~l~-~~~~~~~~a~~l~~~~~i~~iG~G~ 264 (361)
++++.+.+. .-|+.++++-. ..+.++++|+.+...+.+++.|.|.
T Consensus 260 ~gfe~~~~~l~~~~~g~~~tpe~aa~itGV~a~~I~~lA~~~a~~~~~i~~g~g~ 314 (770)
T TIGR00509 260 SGFEKFLPYLLGETDGTPKTAEWASKITGVPAETIKELARLFASKRTMLAAGWSM 314 (770)
T ss_pred ccHHHHHHHhcCCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHhccceeeccchh
Confidence 223333332 13455555543 3567999999998776666666663
No 143
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=74.70 E-value=16 Score=37.53 Aligned_cols=56 Identities=21% Similarity=0.219 Sum_probs=37.4
Q ss_pred CCCEEEEEcCCC-Cc-HHHHHHHHHHHHc--CCeEEEEEcCCCCccccccCeeEEcccCCC
Q psy1915 130 RDDVCFFISQSG-ET-ADSLMALRYCKAR--GALIVGVTNTVGSSISRESHCGIHINAGPE 186 (361)
Q Consensus 130 ~~dlvI~iS~SG-~t-~e~~~a~~~ak~~--g~~~i~IT~~~~S~la~~ad~~l~~~~~~e 186 (361)
+-|++|.+-..- .| +.....++.++++ |+++|.|-.. .|+.+..||..|.+..|.+
T Consensus 157 ~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~-~t~ta~~Ad~~l~i~PGtD 216 (565)
T cd02754 157 HADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPR-RTRTADIADLHLPIRPGTD 216 (565)
T ss_pred hCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCC-CCcchHHhCeeeCCCCCcc
Confidence 446666655443 22 2334456667777 9999988654 7888999999888765543
No 144
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=73.72 E-value=69 Score=34.30 Aligned_cols=57 Identities=14% Similarity=0.069 Sum_probs=36.7
Q ss_pred CCCCEEEEEc-CCCCcH--HHHHHHHHHH-HcCCeEEEEEcCCCCccccccCeeEEcccCCC
Q psy1915 129 FRDDVCFFIS-QSGETA--DSLMALRYCK-ARGALIVGVTNTVGSSISRESHCGIHINAGPE 186 (361)
Q Consensus 129 ~~~dlvI~iS-~SG~t~--e~~~a~~~ak-~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e 186 (361)
..-|++|.+. +..++. .....+..++ ++|+++|.|--+ .|+.+..||..|.+..|.+
T Consensus 195 ~~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr-~s~ta~~Ad~~l~i~PGtD 255 (759)
T PRK15488 195 ANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPR-FSVVASKADEWHAIRPGTD 255 (759)
T ss_pred hhCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCC-CCcchhhCCeeeccCCCcH
Confidence 3456777664 333221 1223344555 789999998655 6889999999998765433
No 145
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=73.41 E-value=10 Score=33.68 Aligned_cols=52 Identities=17% Similarity=0.119 Sum_probs=43.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEE
Q psy1915 128 VFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIH 180 (361)
Q Consensus 128 ~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~ 180 (361)
+.+-|++|++-.|+...-....++.++++|+++|.| |...+++...+|..+.
T Consensus 153 ~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~i-N~~~~~~d~~~d~~~~ 204 (206)
T cd01410 153 ACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIV-NLQPTPKDKLADLVIH 204 (206)
T ss_pred HhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEE-CCCCCCCCccccEEEe
Confidence 346799999999999999999999999999998855 4557888888887663
No 146
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=73.08 E-value=7.3 Score=34.98 Aligned_cols=52 Identities=17% Similarity=0.080 Sum_probs=43.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEE
Q psy1915 128 VFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIH 180 (361)
Q Consensus 128 ~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~ 180 (361)
+.+-|++|++-.|+...-.-...+.|+++|+++|.| |...++....+|..|.
T Consensus 169 ~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~i-N~~~~~~~~~~~~~i~ 220 (222)
T cd01413 169 AKEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIV-NADETPFDYIADLVIQ 220 (222)
T ss_pred HhcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEE-cCCCCCCCcceeEEEe
Confidence 446799999999999999999999999999998744 5556788888887653
No 147
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=72.60 E-value=33 Score=35.72 Aligned_cols=119 Identities=8% Similarity=-0.047 Sum_probs=56.0
Q ss_pred ccHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEec-----------CCcccc-CccCccCCCcEE
Q psy1915 240 MDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMA-----------GELKHG-PLALIDNSMPVI 307 (361)
Q Consensus 240 ~~~~~~~~a~~l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~-----------~E~~Hg-p~~~i~~~~~vi 307 (361)
|++.++.+++.|.+.+.+.+++++....-......+|.+..+.+-..+.. .++..| +..-+..-..++
T Consensus 288 WdeAl~~ia~kL~~i~~va~~~~~~~~~e~~~~~~~~~~~lGt~~~~~~~~~~~~~~~~~~~~~~~g~~~~di~~ad~il 367 (603)
T TIGR01973 288 WAEALAIAAEKLKASSRIGGIAGPRSSLEELFALKKLVRKLGSENFDLRIRNYEFESADLRANYLFNTTLADIEEADLVL 367 (603)
T ss_pred HHHHHHHHHHHHhccCcEEEEeCCCCCHHHHHHHHHHHHHhCCCcccccccccccccchhhcccccCCCHHHHHhCCEEE
Confidence 66677788888887666656655533222223334555543322111110 011111 222222334444
Q ss_pred EEEcCC-ccHHHHHHHHHHHHHcC-CcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 308 MILTRD-PVYVKCMNALLQVIARD-GRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 308 ~i~~~g-~~~~~~~~~~~~~~~~g-~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
++..+- ++.+.....+...+++| +++|+|... .++.+..+|..+.+.+..|
T Consensus 368 ~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr-~s~ta~~Ad~~l~i~Pgtd 420 (603)
T TIGR01973 368 LVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIE-KWNLTYPANTNLVFHPGLS 420 (603)
T ss_pred EEccCchhhhHHHHHHHHHHHhcCCcEEEEECCc-cccchhhhccceeecCCcc
Confidence 443221 22222333344455555 566655544 4566677888877766554
No 148
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=71.97 E-value=8.5 Score=35.49 Aligned_cols=55 Identities=9% Similarity=-0.013 Sum_probs=45.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEccc
Q psy1915 128 VFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINA 183 (361)
Q Consensus 128 ~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~ 183 (361)
+.+-|++|+|-.|+...-....++.++++|+++|-|- ...+++...+|..|.-.+
T Consensus 202 ~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN-~~~t~~d~~a~~~i~~~~ 256 (260)
T cd01409 202 LAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVN-IGPTRADHLATLKVDARC 256 (260)
T ss_pred HhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEc-CCCCCCCccccEEEeCCh
Confidence 4557999999999999999999999999999988665 557899999998776544
No 149
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=70.50 E-value=12 Score=38.85 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=36.3
Q ss_pred CCEEEEEcCC-CCcH---------HHHHHHHHHHHcCCeEEEEEcCCCCcccc-ccCeeEEcccCC
Q psy1915 131 DDVCFFISQS-GETA---------DSLMALRYCKARGALIVGVTNTVGSSISR-ESHCGIHINAGP 185 (361)
Q Consensus 131 ~dlvI~iS~S-G~t~---------e~~~a~~~ak~~g~~~i~IT~~~~S~la~-~ad~~l~~~~~~ 185 (361)
-|++|.+... .+|. .....+..+|++|+++|.|--+ .|+.+. .||..|.+..|.
T Consensus 170 ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDPr-~s~ta~~~AD~~l~irPGt 234 (609)
T cd02751 170 SDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPR-YTDTAAVLAAEWIPIRPGT 234 (609)
T ss_pred CCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECCC-CCccccccCCEEECCCCCc
Confidence 5676666433 3332 1235667788999999988655 677776 799988876543
No 150
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=70.11 E-value=22 Score=37.07 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=37.1
Q ss_pred CCCEEEEEcCC-CCcHH----HHHHHHHHHHcCCeEEEEEcCCCCcccc-ccCeeEEcccCC
Q psy1915 130 RDDVCFFISQS-GETAD----SLMALRYCKARGALIVGVTNTVGSSISR-ESHCGIHINAGP 185 (361)
Q Consensus 130 ~~dlvI~iS~S-G~t~e----~~~a~~~ak~~g~~~i~IT~~~~S~la~-~ad~~l~~~~~~ 185 (361)
.-|++|.+... ..|.- ....+..||++|+++|.|--. .|+.+. .||..|.+..|.
T Consensus 166 ~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr-~t~tA~~~AD~~i~irPGT 226 (617)
T cd02770 166 DSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPR-YTDTAVTLADEWIPIRPGT 226 (617)
T ss_pred cCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCC-CCccccccCCEEECCCCCc
Confidence 34676666443 33321 235667788999999998765 577775 899998886543
No 151
>CHL00067 rps2 ribosomal protein S2
Probab=69.47 E-value=33 Score=31.02 Aligned_cols=48 Identities=25% Similarity=0.286 Sum_probs=35.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcc
Q psy1915 129 FRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHIN 182 (361)
Q Consensus 129 ~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~ 182 (361)
...|++|++....+. .|++.|+..|.++|+|++...+ ... .|+.|+.+
T Consensus 160 ~~P~~iiv~d~~~~~----~ai~Ea~~l~IPvIaivDTn~~-p~~-idypIP~N 207 (230)
T CHL00067 160 KLPDIVIIIDQQEEY----TALRECRKLGIPTISILDTNCD-PDL-ADIPIPAN 207 (230)
T ss_pred cCCCEEEEeCCcccH----HHHHHHHHcCCCEEEEEeCCCC-ccc-cceeeecC
Confidence 456888888887655 6778888999999999987444 333 57777654
No 152
>PRK14097 pgi glucose-6-phosphate isomerase; Provisional
Probab=69.01 E-value=38 Score=33.87 Aligned_cols=56 Identities=13% Similarity=0.178 Sum_probs=32.4
Q ss_pred CCCcEEEEEcCCccHHHHHHH--H-HHHHHc-C-----CcEEEEecCCCchhhhccc----ceEEcCCC
Q psy1915 302 NSMPVIMILTRDPVYVKCMNA--L-LQVIAR-D-----GRPIVICEKGDTETQALAT----KTLEVPHT 357 (361)
Q Consensus 302 ~~~~vi~i~~~g~~~~~~~~~--~-~~~~~~-g-----~~~v~I~~~~~~~~~~~~d----~~i~~p~~ 357 (361)
+++.+++++-+|.|.|.+... + +++.+. | -++++||+.+...+...++ .++.+|+.
T Consensus 135 ~~tl~iViSKSGtT~ET~~~~~~~~~~l~~~~g~~~~~~~~v~iTd~~~~~L~~~a~~~g~~~f~ip~~ 203 (448)
T PRK14097 135 KDFSINVISKSGTTTEPAIAFRIFKELLEKKYGKEEAKKRIYATTDKAKGALKTLADAEGYETFVIPDD 203 (448)
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcccccceEEEEeCCCchHhhccchhcCcCEEeCCCC
Confidence 568888888889887544421 2 223222 2 1367777665544545554 47877764
No 153
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=68.11 E-value=35 Score=31.42 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=34.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcc
Q psy1915 129 FRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHIN 182 (361)
Q Consensus 129 ~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~ 182 (361)
...|++|++...-+. .|++.|+..|++||+|++. +++. ...|+.|+.+
T Consensus 156 ~~Pd~iii~d~~~~~----~ai~Ea~kl~IPiIaivDT-n~dp-~~IdypIP~N 203 (258)
T PRK05299 156 GLPDALFVVDPNKEH----IAVKEARKLGIPVVAIVDT-NCDP-DGVDYPIPGN 203 (258)
T ss_pred cCCCEEEEeCCCccH----HHHHHHHHhCCCEEEEeeC-CCCC-cccceeeecC
Confidence 457899998876544 5677788899999999977 4443 3567766653
No 154
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=68.05 E-value=25 Score=36.26 Aligned_cols=56 Identities=16% Similarity=0.133 Sum_probs=39.2
Q ss_pred CCCEEEEEcCC-CCc-HHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccCCC
Q psy1915 130 RDDVCFFISQS-GET-ADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE 186 (361)
Q Consensus 130 ~~dlvI~iS~S-G~t-~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e 186 (361)
.-|++|.+... ..| +-....+..+|++|+++|.|--+ .|+.++.||..|.+..|.+
T Consensus 159 ~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr-~s~ta~~Ad~~l~irPGTD 216 (567)
T cd02765 159 NAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPV-YSTTAAKADQWVPIRPGTD 216 (567)
T ss_pred cCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCC-CCcchhhcCEEeccCCCch
Confidence 44666655443 333 23456667788999999988655 6899999999998866544
No 155
>KOG2446|consensus
Probab=65.00 E-value=8.2 Score=37.93 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=42.3
Q ss_pred CcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEec---ccccccCCCCCC-CCEEEEEcCCCCcHHHHHHHH
Q psy1915 76 SPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELA---SDFLDRNTPVFR-DDVCFFISQSGETADSLMALR 151 (361)
Q Consensus 76 ~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~---~e~~~~~~~~~~-~dlvI~iS~SG~t~e~~~a~~ 151 (361)
.++-+|+|+|.. + |.+..++.+.+- ..|..+..+.. .+.......++| .+++|++|.++.|.|++.-++
T Consensus 152 dVvnIGIGGSdL-G----P~mVteALk~y~--~~gl~~~FvsNiD~t~ia~~~~kl~pEttLfiVaSKTftT~ETitnae 224 (546)
T KOG2446|consen 152 DVVNIGIGGSDL-G----PLMVTEALKPYG--PGGLEVHFVSNIDGTHIAEVLKKLNPETTLFIVASKTFTTAETITNAE 224 (546)
T ss_pred eEEEeccccccc-c----hHHHHHhhccCC--CCCceEEEEecCCchhHHHHHhccCccceEEEEEecCcCcHHHHhhHH
Confidence 457789998853 2 222211111111 12345555432 222222234444 568999999999999999999
Q ss_pred HHHH
Q psy1915 152 YCKA 155 (361)
Q Consensus 152 ~ak~ 155 (361)
.||+
T Consensus 225 tak~ 228 (546)
T KOG2446|consen 225 TAKE 228 (546)
T ss_pred HHHH
Confidence 9886
No 156
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=64.72 E-value=15 Score=34.22 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=43.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccc-cccCeeEEc
Q psy1915 128 VFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSIS-RESHCGIHI 181 (361)
Q Consensus 128 ~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la-~~ad~~l~~ 181 (361)
+.+-|++|++-.|+...-.....+.|+++|+++|.|.-. .+++. ..+|+.|.-
T Consensus 197 ~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~-~t~~~~~~~d~~i~~ 250 (271)
T PTZ00409 197 IDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNIS-KTYITNRISDYHVRA 250 (271)
T ss_pred HHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCC-CCCCCCccccEEEEC
Confidence 456799999999999999999999999999998866644 56776 467877654
No 157
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=64.68 E-value=19 Score=30.65 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=25.9
Q ss_pred CCCCCE-EEEEcCCCCcHHHHHHHHHHHHcCCeEEEE
Q psy1915 128 VFRDDV-CFFISQSGETADSLMALRYCKARGALIVGV 163 (361)
Q Consensus 128 ~~~~dl-vI~iS~SG~t~e~~~a~~~ak~~g~~~i~I 163 (361)
+-.+|+ +|.|.-.-.++-+-+.+++||++|+.||+-
T Consensus 104 ll~gDVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT 140 (217)
T COG4015 104 LLKGDVVVICIAGGDTIPVTAAIINYAKERGIKTIST 140 (217)
T ss_pred hhcCCEEEEEecCCCcchhHHHHHHHHHHcCceEeec
Confidence 334565 556655556677778889999999999863
No 158
>PRK00179 pgi glucose-6-phosphate isomerase; Reviewed
Probab=64.60 E-value=54 Score=33.74 Aligned_cols=103 Identities=8% Similarity=0.000 Sum_probs=49.6
Q ss_pred CCeEEEEeccCCHHHHHHHHHHHHHh----hCcceEEEecCCccccCccCccC-CCcEEEEEcCCccHHHHH--HHH-HH
Q psy1915 254 QKSMLLMGRGYNYATCMEGALKIKEL----TYMHSEGIMAGELKHGPLALIDN-SMPVIMILTRDPVYVKCM--NAL-LQ 325 (361)
Q Consensus 254 ~~~i~~iG~G~~~~~A~e~alkl~E~----~~~~a~~~~~~E~~Hgp~~~i~~-~~~vi~i~~~g~~~~~~~--~~~-~~ 325 (361)
.+.++++|-|.++--.+-...-+... ..++......+...+.-...+++ .|.+++++-+|.|.|.+. ..+ ++
T Consensus 145 ~~~vV~IGIGGS~LGp~~~~~al~~~~~~~~~l~fl~nvDp~~~~~~l~~l~~~~TL~iViSKSgtT~ET~~n~~~~~~~ 224 (548)
T PRK00179 145 ITDVVNIGIGGSDLGPVMVTEALRPYADPGLRVHFVSNVDGAHLAETLKKLDPETTLFIVASKTFTTQETLTNAHSARDW 224 (548)
T ss_pred cCeEEEECCCcchHHHHHHHHHhhhhccCCCceEEEeCCCHHHHHHHHhcCCcccEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 47899999777644333222112211 11222222222333333333444 467777777888875443 222 23
Q ss_pred HHHcC-------CcEEEEecCCCchhhhccc---ceEEcCCC
Q psy1915 326 VIARD-------GRPIVICEKGDTETQALAT---KTLEVPHT 357 (361)
Q Consensus 326 ~~~~g-------~~~v~I~~~~~~~~~~~~d---~~i~~p~~ 357 (361)
+++.+ .+.|+||+..+ ++.+... .++.+|+.
T Consensus 225 l~~~~~~~~~~~~h~vaVT~~~~-~~~~~g~~~~~~F~~~d~ 265 (548)
T PRK00179 225 FLAAGGDEAAVAKHFVAVSTNAE-AVAEFGIDPDNMFGFWDW 265 (548)
T ss_pred HHHhcCccccccceEEEEcCCcH-HHHHcCCchhcEEECCCC
Confidence 43322 23677787654 3434332 37777754
No 159
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=63.94 E-value=37 Score=32.44 Aligned_cols=39 Identities=31% Similarity=0.270 Sum_probs=26.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 320 MNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 320 ~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
...+.+.+++|+++|+|.... ++....+|..+.+++..|
T Consensus 175 ~~~~~~a~~~g~kvv~idp~~-s~t~~~ad~~i~i~pgtd 213 (374)
T cd00368 175 AARLRRAKKRGAKLIVIDPRR-TETAAKADEWLPIRPGTD 213 (374)
T ss_pred HHHHHHHHHCCCeEEEEcCCC-CcchHhhCEeeCCCCCcH
Confidence 344555666788888777654 455667888887776654
No 160
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=63.80 E-value=22 Score=30.27 Aligned_cols=52 Identities=12% Similarity=0.180 Sum_probs=38.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCC--CCccccccCeeEEccc
Q psy1915 129 FRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTV--GSSISRESHCGIHINA 183 (361)
Q Consensus 129 ~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~--~S~la~~ad~~l~~~~ 183 (361)
+.=|.++.+|-.| +-..+++.+|++|..|+++.... ..+|.+.||..+.+..
T Consensus 104 ~~iD~~vLvSgD~---DF~~Lv~~lre~G~~V~v~g~~~~ts~~L~~acd~FI~L~~ 157 (160)
T TIGR00288 104 PNIDAVALVTRDA---DFLPVINKAKENGKETIVIGAEPGFSTALQNSADIAIILGE 157 (160)
T ss_pred CCCCEEEEEeccH---hHHHHHHHHHHCCCEEEEEeCCCCChHHHHHhcCeEEeCCC
Confidence 3447788877766 45567778899999999999543 2368889998888754
No 161
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=63.39 E-value=12 Score=34.27 Aligned_cols=55 Identities=7% Similarity=-0.018 Sum_probs=45.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEccc
Q psy1915 128 VFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINA 183 (361)
Q Consensus 128 ~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~ 183 (361)
+.+-|++|++-.|+...-.....+.++++|++++.|. ...++....+|..+...+
T Consensus 176 ~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN-~~~t~~d~~~~~~i~~~~ 230 (244)
T PRK14138 176 SSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVN-LGETPLDDIATLKYNMDV 230 (244)
T ss_pred HhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEc-CCCCCCCcceeEEEeCCH
Confidence 4567999999999999999999999999999988555 557888888888776543
No 162
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=63.24 E-value=52 Score=29.23 Aligned_cols=47 Identities=13% Similarity=0.125 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcc
Q psy1915 130 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHIN 182 (361)
Q Consensus 130 ~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~ 182 (361)
..|++|++...-+ ..+++.|+..|.++|+|++. +++. +..|+.|+.+
T Consensus 143 ~P~~vii~~~~~~----~~~i~Ea~~l~IP~i~i~Dt-n~~~-~~i~ypIp~N 189 (211)
T PF00318_consen 143 LPDLVIILDPNKN----KNAIREANKLNIPTIAIVDT-NCNP-SLIDYPIPAN 189 (211)
T ss_dssp SBSEEEESSTTTT----HHHHHHHHHTTS-EEEEEST-TS-G-TTSSEEEES-
T ss_pred cCcEEEEeccccc----chhHHHHHhcCceEEEeecC-CCCc-cccceEeecC
Confidence 3678888877554 46778889999999999976 4443 3477877654
No 163
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=63.24 E-value=41 Score=28.95 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=31.2
Q ss_pred HHHHHHhcC-CeEEEEeccCCH-HHHHHHHHHHHHhhCcceEEE
Q psy1915 246 QLAKEMYEQ-KSMLLMGRGYNY-ATCMEGALKIKELTYMHSEGI 287 (361)
Q Consensus 246 ~~a~~l~~~-~~i~~iG~G~~~-~~A~e~alkl~E~~~~~a~~~ 287 (361)
.+++.+.++ ++++++|.|... .-+.+...++-|..++|...-
T Consensus 26 ~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT 69 (171)
T PRK00945 26 IAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAAT 69 (171)
T ss_pred HHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEc
Confidence 445555554 668888999987 677788888999888887644
No 164
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=62.74 E-value=11 Score=33.09 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=30.0
Q ss_pred cCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCc
Q psy1915 138 SQSGETADSLMALRYCKARGALIVGVTNTVGSS 170 (361)
Q Consensus 138 S~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~ 170 (361)
=+||+|.++++.++.++.+|.+++.+|..-++.
T Consensus 13 M~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R 45 (201)
T COG1435 13 MFSGKTEELLRRARRYKEAGMKVLVFKPAIDTR 45 (201)
T ss_pred CcCcchHHHHHHHHHHHHcCCeEEEEecccccc
Confidence 389999999999999999999999999876664
No 165
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=62.41 E-value=31 Score=29.30 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=33.7
Q ss_pred EEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCC-Cc-hhhhcccceEEcCCCCC
Q psy1915 306 VIMILTRDPVYVKCMNALLQVIARDGRPIVICEKG-DT-ETQALATKTLEVPHTVD 359 (361)
Q Consensus 306 vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~-~~-~~~~~~d~~i~~p~~~~ 359 (361)
.|++.++|... ..+++.++++|.+|+++..++ .+ ++..-||..|.+++..|
T Consensus 108 ~~vLvSgD~DF---~~Lv~~lre~G~~V~v~g~~~~ts~~L~~acd~FI~L~~~~~ 160 (160)
T TIGR00288 108 AVALVTRDADF---LPVINKAKENGKETIVIGAEPGFSTALQNSADIAIILGEEEE 160 (160)
T ss_pred EEEEEeccHhH---HHHHHHHHHCCCEEEEEeCCCCChHHHHHhcCeEEeCCCCCC
Confidence 33334444333 345667888999988888554 22 57778999999987643
No 166
>PLN02649 glucose-6-phosphate isomerase
Probab=61.84 E-value=75 Score=32.79 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=17.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH-HHHc
Q psy1915 131 DDVCFFISQSGETADSLMALRY-CKAR 156 (361)
Q Consensus 131 ~dlvI~iS~SG~t~e~~~a~~~-ak~~ 156 (361)
+++.+=.|.-.=|.++++++.. |++.
T Consensus 47 ~~l~~D~sk~~v~~~~l~~l~~la~~~ 73 (560)
T PLN02649 47 DGIYLDYSRQRVTDETMELLFPLAEAA 73 (560)
T ss_pred CCEEEEccCCcCCHHHHHHHHHHHHhC
Confidence 3466667777778888887754 4443
No 167
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=61.53 E-value=56 Score=29.43 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=34.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcc
Q psy1915 129 FRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHIN 182 (361)
Q Consensus 129 ~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~ 182 (361)
...|++|++...-+. .|++.|+..|.+||+|++.. ++. ...|+.|+.+
T Consensus 154 ~~Pd~vii~d~~~~~----~ai~Ea~~l~IP~I~ivDTn-~~p-~~idypIP~N 201 (225)
T TIGR01011 154 KLPDLLFVIDPVKEK----IAVAEARKLGIPVVAIVDTN-CDP-DLVDYPIPGN 201 (225)
T ss_pred cCCCEEEEeCCCccH----HHHHHHHHcCCCEEEEeeCC-CCC-cccceeeecC
Confidence 456899999886443 46677788899999999764 443 3577777654
No 168
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=61.08 E-value=5.3 Score=35.61 Aligned_cols=50 Identities=40% Similarity=0.618 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhccCccceeeeccCCcEEEEecc-cccccccc
Q psy1915 43 DHLARHIAIMEGAFALCFKSKLFPGECVATRRGSPLLVGIKT-KTRLATDH 92 (361)
Q Consensus 43 d~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~i~~~G~G~-S~~~a~~~ 92 (361)
++++++++.|++.|+.++.+...+++++.+++.+++++|... ...+|++.
T Consensus 144 ~ai~~~~~~l~G~fa~~~~d~~~~~~l~~~RD~~PL~~~~~~~~~~~aSE~ 194 (215)
T cd00714 144 EAVKKALKRLEGAYALAVISKDEPDEIVAARNGSPLVIGIGDGENFVASDA 194 (215)
T ss_pred HHHHHHHHHhccceEEEEEEeCCCCEEEEEECCCCcEEEEcCCeEEEEECH
Confidence 577788999999999998766666689999999999999864 44555543
No 169
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=60.50 E-value=71 Score=30.47 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=38.0
Q ss_pred CCCEEEEEcC--CCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccC
Q psy1915 130 RDDVCFFISQ--SGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAG 184 (361)
Q Consensus 130 ~~dlvI~iS~--SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~ 184 (361)
+-|++|.+-. ..+.+.....++.++++|+++|.|-.. .|+.+..+|..+.+..|
T Consensus 156 ~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~-~s~t~~~ad~~i~i~pg 211 (374)
T cd00368 156 NADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPR-RTETAAKADEWLPIRPG 211 (374)
T ss_pred hCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCC-CCcchHhhCEeeCCCCC
Confidence 4566665542 333344566777888889999988875 57888999998877644
No 170
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=59.30 E-value=1.4e+02 Score=27.27 Aligned_cols=80 Identities=14% Similarity=0.155 Sum_probs=50.6
Q ss_pred HhcCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCcc-----CCCcEEEEEcCCccHHHHHHHHHH
Q psy1915 251 MYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALID-----NSMPVIMILTRDPVYVKCMNALLQ 325 (361)
Q Consensus 251 l~~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~-----~~~~vi~i~~~g~~~~~~~~~~~~ 325 (361)
+.+...+.|+|+-+ -+++.-+|+-+.++. .+..+-|..|.+-..- .-.++|++.+.. ...+++|
T Consensus 68 i~~~~~Il~Vstr~---~~~~~V~k~A~~tg~---~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp~~-----d~qAI~E 136 (249)
T PTZ00254 68 IENPADVVVVSSRP---YGQRAVLKFAQYTGA---SAIAGRFTPGTFTNQIQKKFMEPRLLIVTDPRT-----DHQAIRE 136 (249)
T ss_pred HhCCCcEEEEEcCH---HHHHHHHHHHHHhCC---eEECCcccCCCCCCccccccCCCCEEEEeCCCc-----chHHHHH
Confidence 44566788888765 456777888777753 3456667777543221 112444433222 2457888
Q ss_pred HHHcCCcEEEEecCCC
Q psy1915 326 VIARDGRPIVICEKGD 341 (361)
Q Consensus 326 ~~~~g~~~v~I~~~~~ 341 (361)
+...|.++|++++...
T Consensus 137 A~~lnIPvIal~DTds 152 (249)
T PTZ00254 137 ASYVNIPVIALCDTDS 152 (249)
T ss_pred HHHhCCCEEEEecCCC
Confidence 8889999999997653
No 171
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=59.20 E-value=76 Score=32.57 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=32.4
Q ss_pred CcEEEEEcCCccH--HHHHHHHHHHHHc--CCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 304 MPVIMILTRDPVY--VKCMNALLQVIAR--DGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 304 ~~vi~i~~~g~~~--~~~~~~~~~~~~~--g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
.-+|++.+.+... ......+.+.+++ |+++|+|.... ++.+..+|..+.+.++.|
T Consensus 158 ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~-t~ta~~Ad~~l~i~PGtD 216 (565)
T cd02754 158 ADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRR-TRTADIADLHLPIRPGTD 216 (565)
T ss_pred CCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCC-CcchHHhCeeeCCCCCcc
Confidence 4455555444322 2223345555656 88877775544 555677898888877665
No 172
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=59.06 E-value=41 Score=34.08 Aligned_cols=39 Identities=23% Similarity=0.242 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 320 MNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 320 ~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
...+.+.+++|+++|+|.... ++.++.+|..+.+.++.|
T Consensus 176 ~~~~~~a~~~GaklivvDPr~-t~ta~~Ad~~l~i~PGtD 214 (501)
T cd02766 176 MRIIQEARKRGAKVVVIDPYR-TATAARADLHIQIRPGTD 214 (501)
T ss_pred HHHHHHHHHCCCEEEEECCCC-CccHHHhCeeeccCCCcH
Confidence 344556777888988876554 566678999988877655
No 173
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=58.92 E-value=61 Score=32.78 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 321 NALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 321 ~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
..+.+.+++|+++|+|.... ++.++.+|..|.+.++.|
T Consensus 176 ~~i~~a~~~G~k~i~Idp~~-s~ta~~Ad~~l~i~PGtD 213 (512)
T cd02753 176 RRIKRAKRNGAKLIVADPRR-TELARFADLHLQLRPGTD 213 (512)
T ss_pred HHHHHHHHCCCeEEEEcCCC-ccchHhhCeeeCCCCCcH
Confidence 44555667888888887665 345567898888777654
No 174
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=58.45 E-value=36 Score=33.20 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=21.4
Q ss_pred HcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 328 ARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 328 ~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
++|+++++|... .++..+.+|..+.+++..|
T Consensus 166 ~~g~kli~idp~-~t~ta~~Ad~~l~i~pgtd 196 (415)
T cd02761 166 REDRTLIVVDPR-KSDTAKLADIHLQIDPGSD 196 (415)
T ss_pred CCCCEEEEEcCC-CcchhhhcceEEecCCCCc
Confidence 356677766544 4556678899998887765
No 175
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=58.36 E-value=16 Score=31.18 Aligned_cols=33 Identities=27% Similarity=0.190 Sum_probs=28.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcC
Q psy1915 134 CFFISQSGETADSLMALRYCKARGALIVGVTNT 166 (361)
Q Consensus 134 vI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~ 166 (361)
+++.|.||+|.-+-++++..+++|.++-.|=..
T Consensus 7 ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 7 IVGYKNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred EEecCCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 678899999999999999999999877666543
No 176
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=58.27 E-value=62 Score=28.29 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=34.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcc
Q psy1915 127 PVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHIN 182 (361)
Q Consensus 127 ~~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~ 182 (361)
.....|++|++....+ ..+++.|...|.|+|++++.. + --...|+.|+.+
T Consensus 124 ~~~~Pdlviv~~~~~~----~~ai~Ea~~l~IP~I~i~Dtn-~-~~~~i~ypIP~N 173 (193)
T cd01425 124 MFRLPDLVIVLDPRKE----HQAIREASKLGIPVIAIVDTN-C-DPDLIDYPIPAN 173 (193)
T ss_pred cccCCCEEEEeCCccc----hHHHHHHHHcCCCEEEEecCC-C-CCccceEEeecC
Confidence 3456789998876443 567778888999999999764 3 234566666553
No 177
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=58.24 E-value=74 Score=34.51 Aligned_cols=56 Identities=7% Similarity=0.022 Sum_probs=34.8
Q ss_pred CCCEEEEEcC-CCCcHH-HHHHHHHHH--HcCCeEEEEEcCCCCccccccCeeEEcccCCC
Q psy1915 130 RDDVCFFISQ-SGETAD-SLMALRYCK--ARGALIVGVTNTVGSSISRESHCGIHINAGPE 186 (361)
Q Consensus 130 ~~dlvI~iS~-SG~t~e-~~~a~~~ak--~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e 186 (361)
.-|++|.+.. ..+|.- ...-+..++ ++|+++|.|-- ..++.++.||..|.+..|.+
T Consensus 206 ~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviDP-r~t~ta~~ad~~l~irPGtD 265 (830)
T PRK13532 206 AADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLST-FEHRSFELADNGIIFTPQTD 265 (830)
T ss_pred hCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEECC-CCCchhHhcCeeeccCCCCc
Confidence 4567776643 344321 112222233 57999999854 46889999999998866544
No 178
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=58.19 E-value=59 Score=35.72 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=37.8
Q ss_pred CCCEEEEE-cCCCCcH-HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccCCC
Q psy1915 130 RDDVCFFI-SQSGETA-DSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE 186 (361)
Q Consensus 130 ~~dlvI~i-S~SG~t~-e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e 186 (361)
.-|++|.+ ++...|. -....+..|+++|+++|.|--+ -|+.++.||..|.+..|.+
T Consensus 224 na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr-~t~tA~~AD~wlpirPGTD 281 (912)
T TIGR03479 224 NADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPD-YNPSTIHADLWLPVRVGTD 281 (912)
T ss_pred cCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCC-CChhhhhCCeecCCCCCcH
Confidence 34555554 4433332 2345566788899999988654 7889999999988765543
No 179
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=55.45 E-value=1.1e+02 Score=29.40 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=19.7
Q ss_pred HHHHHHHHc-CCcEEEEecCCCchhhhcccceEEcCCC
Q psy1915 321 NALLQVIAR-DGRPIVICEKGDTETQALATKTLEVPHT 357 (361)
Q Consensus 321 ~~~~~~~~~-g~~~v~I~~~~~~~~~~~~d~~i~~p~~ 357 (361)
..+...+++ |+++++|.... ++. .+|..+.+.+.
T Consensus 168 ~~~~~a~~~~g~kli~idp~~-t~~--~ad~~~~~~pg 202 (386)
T cd02768 168 ARLRKAVKKKGAKIAVIGPKD-TDL--IADLTYPVSPL 202 (386)
T ss_pred HHHHHHHHcCCCeEEEECCCc-ccc--ccceEEEcCCc
Confidence 334444444 77877776554 333 57877766554
No 180
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=54.41 E-value=51 Score=30.09 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=32.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcc
Q psy1915 131 DDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHIN 182 (361)
Q Consensus 131 ~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~ 182 (361)
.|++|++--.- =..|+..|++.|+|||+|.+...+| ...|++|+.+
T Consensus 157 Pd~l~ViDp~~----e~iAv~EA~klgIPVvAlvDTn~dp--d~VD~~IP~N 202 (252)
T COG0052 157 PDVLFVIDPRK----EKIAVKEANKLGIPVVALVDTNCDP--DGVDYVIPGN 202 (252)
T ss_pred CCEEEEeCCcH----hHHHHHHHHHcCCCEEEEecCCCCC--ccCceeecCC
Confidence 57777775433 3457778899999999999875554 5678877653
No 181
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=54.30 E-value=2.5e+02 Score=28.56 Aligned_cols=58 Identities=16% Similarity=0.109 Sum_probs=37.7
Q ss_pred CCCCCEEEEEcCCC-Cc-HHHH--HHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccCCC
Q psy1915 128 VFRDDVCFFISQSG-ET-ADSL--MALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE 186 (361)
Q Consensus 128 ~~~~dlvI~iS~SG-~t-~e~~--~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e 186 (361)
+..-|++|.+...- +| ..+. .-+..+|++|+++|.|-.+ .|+.+..||..|.+..|.+
T Consensus 160 ~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr-~s~ta~~AD~~l~i~PGtD 221 (523)
T cd02757 160 YANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPR-LSNTAAKADEWLPIKPGED 221 (523)
T ss_pred hhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCC-CChhhHhcCEeeCCCCCcH
Confidence 34557777777432 22 1122 3344567889999998655 6888889999998765543
No 182
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=54.27 E-value=16 Score=30.22 Aligned_cols=35 Identities=20% Similarity=0.063 Sum_probs=28.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCC
Q psy1915 133 VCFFISQSGETADSLMALRYCKARGALIVGVTNTV 167 (361)
Q Consensus 133 lvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~ 167 (361)
.+++.|.||+|.-+-.+++.++++|.++..|-...
T Consensus 4 ~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~ 38 (140)
T PF03205_consen 4 QVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTD 38 (140)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-S
T ss_pred EEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEcc
Confidence 47899999999999999999999998888665543
No 183
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=54.26 E-value=1.2e+02 Score=32.30 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCCC--cHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccC
Q psy1915 130 RDDVCFFISQSGE--TADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAG 184 (361)
Q Consensus 130 ~~dlvI~iS~SG~--t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~ 184 (361)
.-|++|.+..... +.-+...++.+|++|+++|.|-- ..|..+..||..|.+..|
T Consensus 155 ~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvIDP-r~t~ta~~AD~wl~irPG 210 (679)
T cd02763 155 HTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVNP-VRTGYAAIADEWVPIKPG 210 (679)
T ss_pred hCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEcC-cCCcchHhhCeecCcCCC
Confidence 4567776653211 11233456678889999998854 467789999998877654
No 184
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=53.81 E-value=15 Score=29.82 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=31.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEE--cCCCCccccccCeeEEc
Q psy1915 132 DVCFFISQSGETADSLMALRYCKARGALIVGVT--NTVGSSISRESHCGIHI 181 (361)
Q Consensus 132 dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT--~~~~S~la~~ad~~l~~ 181 (361)
|.++.+|.-+ +...+++.++++|.+|+.+. +.....|.+.||..+.+
T Consensus 97 d~ivLvSgD~---Df~~~v~~l~~~g~~V~v~~~~~~~s~~L~~~ad~f~~~ 145 (146)
T PF01936_consen 97 DTIVLVSGDS---DFAPLVRKLRERGKRVIVVGAEDSASEALRSAADEFISI 145 (146)
T ss_dssp SEEEEE---G---GGHHHHHHHHHH--EEEEEE-GGGS-HHHHHHSSEEEE-
T ss_pred CEEEEEECcH---HHHHHHHHHHHcCCEEEEEEeCCCCCHHHHHhcCEEEeC
Confidence 8888887764 57788888999999888877 45667788889987654
No 185
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=53.16 E-value=1.3e+02 Score=32.46 Aligned_cols=56 Identities=13% Similarity=0.004 Sum_probs=37.9
Q ss_pred CCCEEEEEc-CCCCc--HHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccCCC
Q psy1915 130 RDDVCFFIS-QSGET--ADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE 186 (361)
Q Consensus 130 ~~dlvI~iS-~SG~t--~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e 186 (361)
.-+++|.+- +...+ +-....+..+|++|+++|.|--+ .|+.++.||..|.+..|.+
T Consensus 173 ~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvVDPr-~t~ta~~AD~wlpirPGTD 231 (760)
T cd02760 173 LANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVEPH-LSVTGACSAEWVPIRPKTD 231 (760)
T ss_pred cCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEEcCC-CCcchhhcCeEeCcCCCcH
Confidence 445666663 33222 12345567788899999988655 6888999999988865544
No 186
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=52.87 E-value=15 Score=29.03 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=35.2
Q ss_pred EEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCCch--hhhcccceEEcCC
Q psy1915 307 IMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDTE--TQALATKTLEVPH 356 (361)
Q Consensus 307 i~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~~--~~~~~d~~i~~p~ 356 (361)
+++.+.|+. ..+.++.+++.|.++|+|.+++|+. -.+.+|..+.+|.
T Consensus 5 vLIanrGei---a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~ 53 (110)
T PF00289_consen 5 VLIANRGEI---AVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPP 53 (110)
T ss_dssp EEESS-HHH---HHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEES
T ss_pred EEEECCCHH---HHHHHHHHHHhCCcceeccCchhcccccccccccceecCc
Confidence 456677764 4567777888999999999888763 4567899988883
No 187
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=52.38 E-value=91 Score=29.80 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=34.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcc
Q psy1915 129 FRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHIN 182 (361)
Q Consensus 129 ~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~ 182 (361)
+..|++|++....+ ..|++.|+..|++||+|++.. ++. ...|+.|+.+
T Consensus 151 ~~Pd~viv~d~~~e----~~AI~EA~kl~IPvIaivDTn-~dp-~~IdypIP~N 198 (326)
T PRK12311 151 GLPDLLFVIDTNKE----DIAIQEAQRLGIPVAAIVDTN-CDP-DGITYPVPGN 198 (326)
T ss_pred cCCCEEEEeCCccc----hHHHHHHHHcCCCEEEEeeCC-CCc-cccceeecCC
Confidence 35788888887754 467788899999999999764 443 3467766543
No 188
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=50.65 E-value=1.8e+02 Score=29.09 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=37.6
Q ss_pred CCCCEEEEEc-CCCCcH-HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccCC
Q psy1915 129 FRDDVCFFIS-QSGETA-DSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGP 185 (361)
Q Consensus 129 ~~~dlvI~iS-~SG~t~-e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~ 185 (361)
..-|++|.+. ....+. -....+..+|++|+++|.|-.. .|+.++.||..|.+..|.
T Consensus 169 ~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr-~s~ta~~Ad~~l~i~PGt 226 (461)
T cd02750 169 YNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPD-YSPSAKHADLWVPIKPGT 226 (461)
T ss_pred hcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCC-CCcchhhcCEEeccCCCc
Confidence 3456666664 333332 1234456688999999988554 699999999988876543
No 189
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=50.26 E-value=87 Score=32.90 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 319 CMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 319 ~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
....+++.+++|+++|+|.... +..+..+|..|.+++..|
T Consensus 173 ~~~~i~~a~~~G~klvvidp~~-s~ta~~ad~~i~i~Pgtd 212 (671)
T TIGR01591 173 VAQYLKNAKRNGAKIIVIDPRK-TETAKIADLHIPLKPGTD 212 (671)
T ss_pred HHHHHHHHHHCCCeEEEECCCC-ChhhHhhCcccCCCCCcH
Confidence 3455666777888888886544 455667898888877665
No 190
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=49.52 E-value=72 Score=31.89 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=26.3
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 322 ALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 322 ~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
.+.+.+++|+++|+|.... ++.++.+|..+.+.+..|
T Consensus 191 ~l~~ar~~GaklividPr~-s~ta~~Ad~~l~i~PGtD 227 (461)
T cd02750 191 FLTEARYNGAKVVVVSPDY-SPSAKHADLWVPIKPGTD 227 (461)
T ss_pred HHHHHHHCCCEEEEEcCCC-CcchhhcCEEeccCCCcH
Confidence 3455677888888775544 566778899888877655
No 191
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=49.38 E-value=1.2e+02 Score=33.92 Aligned_cols=56 Identities=14% Similarity=0.158 Sum_probs=40.0
Q ss_pred CCCEEEEEc-CCCCcH-HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccCCC
Q psy1915 130 RDDVCFFIS-QSGETA-DSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE 186 (361)
Q Consensus 130 ~~dlvI~iS-~SG~t~-e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e 186 (361)
.-|++|.+- +..++. -....+..||++|+++|.|-- ..|+.+..||..|.+..|.+
T Consensus 221 ~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDP-R~t~tA~~AD~~l~irPGTD 278 (1009)
T TIGR01553 221 NSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDP-RFNRTATVADLYAPIRSGSD 278 (1009)
T ss_pred hCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcC-CCCchhHhhccEeCCCCChH
Confidence 446666664 445443 345666778999999999865 46889999999988866543
No 192
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=48.59 E-value=1.2e+02 Score=24.17 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=49.8
Q ss_pred EEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCccCCCcEEEEEcCCccHHHHH-------HHHHHHHHc
Q psy1915 257 MLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCM-------NALLQVIAR 329 (361)
Q Consensus 257 i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~~~~~vi~i~~~g~~~~~~~-------~~~~~~~~~ 329 (361)
.++-|.|......+.....|++.. ....+...+..|||.. .+.-. ++.+.|...+.+. +.++++.+.
T Consensus 3 ~VY~g~g~~~~~~~~~~~~L~~~~--~v~~~~~~~I~~~~~~---~~ad~-lVlPGGa~~~~~~~L~~~g~~~i~~~v~~ 76 (114)
T cd03144 3 LVYNGPGASPGSLKHLAELLRLYL--AVSTVTADELAVGPWE---SKTAL-LVVPGGADLPYCRALNGKGNRRIRNFVRN 76 (114)
T ss_pred EEEeCCCCCHHHHHHHHHHHhhcc--ceeeecHHHHhcCchh---hCCCE-EEECCCChHHHHHHHHhhCcHHHHHHHHC
Confidence 567788988777777777777765 6677888899999977 23223 3345565432222 334454456
Q ss_pred CCcEEEEec
Q psy1915 330 DGRPIVICE 338 (361)
Q Consensus 330 g~~~v~I~~ 338 (361)
|++.+.|+-
T Consensus 77 g~p~LGICl 85 (114)
T cd03144 77 GGNYLGICA 85 (114)
T ss_pred CCcEEEEec
Confidence 888888875
No 193
>PF00342 PGI: Phosphoglucose isomerase The structure is C alpha atoms only with no sequence assignment.; InterPro: IPR001672 Phosphoglucose isomerase (5.3.1.9 from EC) (PGI) [, ] is a dimeric enzyme that catalyses the reversible isomerization of glucose-6-phosphate and fructose-6-phosphate. PGI is involved in different pathways: in most higher organisms it is involved in glycolysis; in mammals it is involved in gluconeogenesis; in plants in carbohydrate biosynthesis; in some bacteria it provides a gateway for fructose into the Entner-Doudouroff pathway. The multifunctional protein, PGI, is also known as neuroleukin (a neurotrophic factor that mediates the differentiation of neurons), autocrine motility factor (a tumour-secreted cytokine that regulates cell motility), differentiation and maturation mediator and myofibril-bound serine proteinase inhibitor, and has different roles inside and outside the cell. In the cytoplasm, it catalyses the second step in glycolysis, while outside the cell it serves as a nerve growth factor and cytokine []. PGI from Bacillus stearothermophilus has an open twisted alpha/beta structural motif consisting of two globular domains and two protruding parts. It has been suggested that the top part of the large domain together with one of the protruding loops might participate in inducing the neurotrophic activity []. The structure of rabbit muscle phosphoglucose isomerase complexed with various inhibitors shows that the enzyme is a dimer with two alpha/beta-sandwich domains in each subunit. The location of the bound D-gluconate 6-phosphate inhibitor leads to the identification of residues involved in substrate specificity. In addition, the positions of amino acid residues that are substituted in the genetic disease nonspherocytic hemolytic anemia suggest how these substitutions can result in altered catalysis or protein stability [, ].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis; PDB: 1ZZG_B 1JIQ_A 1IRI_B 1IAT_A 1JLH_C 1NUH_A 1KOJ_A 1HOX_A 1G98_B 1DQR_A ....
Probab=46.52 E-value=19 Score=36.49 Aligned_cols=103 Identities=10% Similarity=0.006 Sum_probs=47.8
Q ss_pred CeEEEEeccCCHHHHHHHHHHHHHhhCc----ceEEEecCCccccCccCccC-CCcEEEEEcCCccHHHHH--HHH-HHH
Q psy1915 255 KSMLLMGRGYNYATCMEGALKIKELTYM----HSEGIMAGELKHGPLALIDN-SMPVIMILTRDPVYVKCM--NAL-LQV 326 (361)
Q Consensus 255 ~~i~~iG~G~~~~~A~e~alkl~E~~~~----~a~~~~~~E~~Hgp~~~i~~-~~~vi~i~~~g~~~~~~~--~~~-~~~ 326 (361)
+.++++|-|.++--.+-..--+....+- +.-....++..+--...+++ .+.+++++-+|.|.|.+. +.+ +++
T Consensus 97 ~~vV~IGIGGS~LGp~~~~~al~~~~~~~~~~~f~~n~Dp~~l~~~l~~ld~~~Tl~iViSKSgtT~ET~~n~~~~~~~l 176 (486)
T PF00342_consen 97 TDVVVIGIGGSSLGPRALYEALKPYFSNPPRLHFLDNVDPADLARLLERLDPETTLFIVISKSGTTIETLANFRIAREWL 176 (486)
T ss_dssp SEEEEE--GGGTHHHHHHHHHTGGGTTSSCEEEEESSSSHHHHHHHHTTSTGGGEEEEEEESSST-HHHHHHHHHHHHHH
T ss_pred eEEEEEecchhhHHHHHHHHHhhhhcccceEEEEeccCChHHHHHHHhcCCCccEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 6899999998865444322222222221 11111122222233334444 477777788888875433 112 223
Q ss_pred HHcC-------CcEEEEecCCCchh--hhcccceEEcCCC
Q psy1915 327 IARD-------GRPIVICEKGDTET--QALATKTLEVPHT 357 (361)
Q Consensus 327 ~~~g-------~~~v~I~~~~~~~~--~~~~d~~i~~p~~ 357 (361)
.+++ .+.|+||+.++... ......++.+|+.
T Consensus 177 ~~~~~~~~~~~~h~vavT~~~~~~~~~~~~~~~~f~~~d~ 216 (486)
T PF00342_consen 177 EKKGGDKEEAAKHFVAVTDNGSGALKFGIDEENIFPIPDW 216 (486)
T ss_dssp HHHHHSGGGGGGTEEEEESSHHHHHHHTHHGGGEEE--TT
T ss_pred HhhcCccccccceEEEeCCCchHHHHHHHHHhcceecccc
Confidence 3333 45788887764432 1122477888763
No 194
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=46.41 E-value=14 Score=28.55 Aligned_cols=33 Identities=24% Similarity=0.239 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCeEEEEEcCCCCccccccC
Q psy1915 144 ADSLMALRYCKARGALIVGVTNTVGSSISRESH 176 (361)
Q Consensus 144 ~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad 176 (361)
+...++++..+++|.+++-+||++..+-..+++
T Consensus 17 pga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~ 49 (101)
T PF13344_consen 17 PGAVEALDALRERGKPVVFLTNNSSRSREEYAK 49 (101)
T ss_dssp TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHH
Confidence 457889999999999999999987666555443
No 195
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=46.25 E-value=24 Score=31.26 Aligned_cols=45 Identities=24% Similarity=0.146 Sum_probs=32.4
Q ss_pred hcCCceEEEecccc--cccCCCCCCCCEEEEEcCCCCcHHHHHHHHH
Q psy1915 108 LTELPVMVELASDF--LDRNTPVFRDDVCFFISQSGETADSLMALRY 152 (361)
Q Consensus 108 ~~g~~~~~~~~~e~--~~~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ 152 (361)
..|+++++....+. .+.+..+..+++.|+||.+|.++-+-..++.
T Consensus 92 ~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~ 138 (205)
T TIGR01470 92 ARGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRE 138 (205)
T ss_pred HcCCEEEECCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHH
Confidence 36888876654442 1345567889999999999999987666554
No 196
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=45.97 E-value=1.1e+02 Score=29.97 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=26.6
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 321 NALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 321 ~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
....+.+++|+++|+|.... ++.+..+|..|.+.+..|
T Consensus 132 ~~~~~~~~~g~k~v~vdP~~-t~~a~~ad~~i~i~PGtD 169 (432)
T PF00384_consen 132 RFRKAARKRGAKLVVVDPRR-TPTAAKADEWIPIRPGTD 169 (432)
T ss_dssp HHHHHHHHCTSEEEEEESSB--HHGGGTSEEEEE-TTTH
T ss_pred ccccccccCCcceEEEEecc-chhhhhcccccccccccc
Confidence 45566777889988887665 456677899988877654
No 197
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=45.34 E-value=1.1e+02 Score=32.84 Aligned_cols=56 Identities=13% Similarity=0.168 Sum_probs=35.0
Q ss_pred CCCEEEEEcCC-CCcH-----HHHHHHHHHHHcCCeEEEEEcCCCCccc-cccCeeEEcccCCC
Q psy1915 130 RDDVCFFISQS-GETA-----DSLMALRYCKARGALIVGVTNTVGSSIS-RESHCGIHINAGPE 186 (361)
Q Consensus 130 ~~dlvI~iS~S-G~t~-----e~~~a~~~ak~~g~~~i~IT~~~~S~la-~~ad~~l~~~~~~e 186 (361)
.-|++|.+... .+|. .....++.++++|+++|.|--+ .|+.+ ..||..|.+..|.+
T Consensus 214 ~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr-~t~taa~~Ad~~l~irPGtD 276 (797)
T TIGR02166 214 NSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPR-YTDTVAGREDEWIPIRPGTD 276 (797)
T ss_pred hCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCC-CCccchhcCCEEECCCCCCH
Confidence 34666655333 3332 2344455556789999998665 45655 68999998866543
No 198
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=44.39 E-value=56 Score=29.08 Aligned_cols=51 Identities=20% Similarity=0.155 Sum_probs=42.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEE
Q psy1915 129 FRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIH 180 (361)
Q Consensus 129 ~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~ 180 (361)
.+-|++|++-.|+...-....++.++++|+++|.|.- ..++....+|..+.
T Consensus 166 ~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~-~~~~~~~~~d~~~~ 216 (218)
T cd01407 166 AKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINL-EPTPADRKADLVIL 216 (218)
T ss_pred hcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECC-CCCCCCccceEEEe
Confidence 3469999999999999999999999999999887764 46777777777653
No 199
>PRK05568 flavodoxin; Provisional
Probab=43.45 E-value=49 Score=26.82 Aligned_cols=49 Identities=16% Similarity=0.103 Sum_probs=32.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH-HHHcCCeEEEEEcCCCCccccc--cCeeEE
Q psy1915 131 DDVCFFISQSGETADSLMALRY-CKARGALIVGVTNTVGSSISRE--SHCGIH 180 (361)
Q Consensus 131 ~dlvI~iS~SG~t~e~~~a~~~-ak~~g~~~i~IT~~~~S~la~~--ad~~l~ 180 (361)
+-+++-.|.+|+|+.+.+++.. +++.|..+-.+ +-.+.+...+ +|..++
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~-~~~~~~~~~~~~~d~iil 54 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLL-NVSEASVDDVKGADVVAL 54 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEE-ECCCCCHHHHHhCCEEEE
Confidence 3578899999999999998855 66777755444 3334443333 454443
No 200
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=43.41 E-value=32 Score=25.29 Aligned_cols=45 Identities=22% Similarity=0.289 Sum_probs=31.3
Q ss_pred EEEEEcCCCCc---HHHHHHHHHHHHcCCeEEEEEcCCCCccccccCe
Q psy1915 133 VCFFISQSGET---ADSLMALRYCKARGALIVGVTNTVGSSISRESHC 177 (361)
Q Consensus 133 lvI~iS~SG~t---~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~ 177 (361)
-+-.|...|+. -.+-+|++.|++.|...|-|..+.+-|++++.|+
T Consensus 14 ~VrlI~~~g~~lGv~~~~eAl~~A~~~~lDLV~v~~~~~PPVcKi~dy 61 (76)
T PF05198_consen 14 EVRLIDEDGEQLGVMSLREALRLAKEKGLDLVEVSPNADPPVCKIMDY 61 (76)
T ss_dssp EEEEE-TTS-EEEEEEHHHHHHHHHHTT-EEEEEETTSSS-EEEEE-H
T ss_pred EEEEECCCCcEeceEEHHHHHHHHHHcCCcEEEEcCCCCCCeEEEech
Confidence 34444555554 3567899999999999999998888888887764
No 201
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=43.26 E-value=44 Score=29.74 Aligned_cols=45 Identities=20% Similarity=0.059 Sum_probs=34.3
Q ss_pred hcCCceEEEecccc--cccCCCCCCCCEEEEEcCCCCcHHHHHHHHH
Q psy1915 108 LTELPVMVELASDF--LDRNTPVFRDDVCFFISQSGETADSLMALRY 152 (361)
Q Consensus 108 ~~g~~~~~~~~~e~--~~~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ 152 (361)
..++++++.+..++ ...+..++.+++.|+||.+|.++-+-+.++.
T Consensus 95 ~~~i~vNv~D~p~~~~f~~Pa~~~r~~l~iaIsT~G~sP~la~~ir~ 141 (210)
T COG1648 95 ERRILVNVVDDPELCDFIFPAIVDRGPLQIAISTGGKSPVLARLLRE 141 (210)
T ss_pred HhCCceeccCCcccCceecceeeccCCeEEEEECCCCChHHHHHHHH
Confidence 36788888766553 2345677888999999999999988777664
No 202
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=43.21 E-value=1.4e+02 Score=29.61 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=26.9
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 321 NALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 321 ~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
..+.+.+++|+++|+|.... ++.++.+|..+.+.+..|
T Consensus 177 ~~~~~a~~~g~kiivIdPr~-t~ta~~AD~~i~i~PGtD 214 (454)
T cd02755 177 RRLMKALENGAKVVVVDPRF-SELASKADEWIPIKPGTD 214 (454)
T ss_pred HHHHHHHHCCCeEEEECCCC-ChhhHhhCEecCCCCCcH
Confidence 44555677888888777654 566678899888777654
No 203
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=43.13 E-value=21 Score=30.12 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEc
Q psy1915 132 DVCFFISQSGETADSLMALRYCKARGALIVGVTN 165 (361)
Q Consensus 132 dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~ 165 (361)
.|+|-+|+||+|+.+.+.+ ++..|+.++-|..
T Consensus 2 ~LVvYyS~tGnT~~vA~~I--a~~~gadi~eI~~ 33 (156)
T PF12682_consen 2 TLVVYYSRTGNTKKVAEKI--AEKTGADIFEIEP 33 (156)
T ss_dssp EEEEE--SSSHHHHHHHHH--HHCCT-EEEE-BB
T ss_pred EEEEEECCCchHHHHHHHH--HHHHCCCEEEEEe
Confidence 5889999999999998754 4566887776664
No 204
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=42.97 E-value=40 Score=20.12 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=17.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH
Q psy1915 130 RDDVCFFISQSGETADSLMALRY 152 (361)
Q Consensus 130 ~~dlvI~iS~SG~t~e~~~a~~~ 152 (361)
.+.+-|+||..|.++..-..++.
T Consensus 2 ~g~LqI~ISTnG~sP~la~~iR~ 24 (30)
T PF14824_consen 2 RGPLQIAISTNGKSPRLARLIRK 24 (30)
T ss_dssp -TTEEEEEEESSS-HHHHHHHHH
T ss_pred CCCeEEEEECCCCChHHHHHHHH
Confidence 46789999999999988776654
No 205
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=42.57 E-value=1.2e+02 Score=31.94 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=32.7
Q ss_pred CcEEEEEcCCcc--HHHHHHHHHHHHHc-CCcEEEEecCCCchhhhcccceEEcCCCCCC
Q psy1915 304 MPVIMILTRDPV--YVKCMNALLQVIAR-DGRPIVICEKGDTETQALATKTLEVPHTVDC 360 (361)
Q Consensus 304 ~~vi~i~~~g~~--~~~~~~~~~~~~~~-g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~~ 360 (361)
.-+|++.+++.. .......+.+.+++ |+++|+|..+. ++.++.+|..+.+.+..|+
T Consensus 170 Ad~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~-t~Ta~~AD~~l~irPGTD~ 228 (649)
T cd02752 170 ADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRF-TRTAAKADLYVPIRSGTDI 228 (649)
T ss_pred CCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCC-CchhHhcCEeeCcCCChHH
Confidence 345555554432 22223334455555 78877776655 4556678998888776553
No 206
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=42.44 E-value=26 Score=27.80 Aligned_cols=32 Identities=28% Similarity=0.340 Sum_probs=22.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHc-CCeEEEEEcCCC
Q psy1915 132 DVCFFISQSGETADSLMALRYCKAR-GALIVGVTNTVG 168 (361)
Q Consensus 132 dlvI~iS~SG~t~e~~~a~~~ak~~-g~~~i~IT~~~~ 168 (361)
..+|++|.||+|...+ +|-+ .++++++|+++.
T Consensus 18 k~Ivv~T~sG~ta~~i-----sk~RP~~pIiavt~~~~ 50 (117)
T PF02887_consen 18 KAIVVFTESGRTARLI-----SKYRPKVPIIAVTPNES 50 (117)
T ss_dssp SEEEEE-SSSHHHHHH-----HHT-TSSEEEEEESSHH
T ss_pred CEEEEECCCchHHHHH-----HhhCCCCeEEEEcCcHH
Confidence 4789999999887655 3332 699999998753
No 207
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=42.34 E-value=47 Score=32.02 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcc
Q psy1915 146 SLMALRYCKARGALIVGVTNTVGSSISRESHCGIHIN 182 (361)
Q Consensus 146 ~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~ 182 (361)
-..+++.|++.|.++++++.++++|-.+++|..+..+
T Consensus 11 ~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~ 47 (380)
T TIGR01142 11 GKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVIN 47 (380)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcC
Confidence 4556777999999999999999999999999877654
No 208
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=42.04 E-value=66 Score=29.29 Aligned_cols=52 Identities=12% Similarity=0.048 Sum_probs=41.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEE
Q psy1915 128 VFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIH 180 (361)
Q Consensus 128 ~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~ 180 (361)
+.+-|++|++-.|+...-.......|+++|+++|-|--.+ ++....+|..+.
T Consensus 170 ~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~-~~~~~~~~~~i~ 221 (242)
T PTZ00408 170 MSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEE-GTNYSQFDESIY 221 (242)
T ss_pred HHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCC-CCCCccCCEEEE
Confidence 5667999999999999999999999999999988776554 445556676553
No 209
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=41.47 E-value=33 Score=23.99 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCCeEEEEEcCC
Q psy1915 145 DSLMALRYCKARGALIVGVTNTV 167 (361)
Q Consensus 145 e~~~a~~~ak~~g~~~i~IT~~~ 167 (361)
..-+.++.|+++|...++||+..
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCC
Confidence 46688999999999999999874
No 210
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=41.16 E-value=34 Score=28.01 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcC--CCCccccccC
Q psy1915 130 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNT--VGSSISRESH 176 (361)
Q Consensus 130 ~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~--~~S~la~~ad 176 (361)
+-|.++.+|.-| +...+++.++++|.+++.+... ....|.+.||
T Consensus 99 ~~d~ivLvSgD~---Df~~~i~~lr~~G~~V~v~~~~~~~s~~L~~~~d 144 (149)
T cd06167 99 RIDTIVLVSGDS---DFVPLVERLRELGKRVIVVGFEAKTSRELRKAAD 144 (149)
T ss_pred CCCEEEEEECCc---cHHHHHHHHHHcCCEEEEEccCccChHHHHHhCC
Confidence 457888887766 8888999999999999988874 3334555565
No 211
>PRK09004 FMN-binding protein MioC; Provisional
Probab=41.13 E-value=93 Score=25.76 Aligned_cols=30 Identities=13% Similarity=-0.120 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHH-HHHHcCCeEEE
Q psy1915 133 VCFFISQSGETADSLMALR-YCKARGALIVG 162 (361)
Q Consensus 133 lvI~iS~SG~t~e~~~a~~-~ak~~g~~~i~ 162 (361)
.++.-|++|+|+++-+.+. .+++.|..+-.
T Consensus 5 ~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~ 35 (146)
T PRK09004 5 TLISGSTLGGAEYVADHLAEKLEEAGFSTET 35 (146)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHHcCCceEE
Confidence 5777899999999998884 56677766543
No 212
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=40.75 E-value=35 Score=30.69 Aligned_cols=43 Identities=5% Similarity=-0.120 Sum_probs=28.8
Q ss_pred cCCceEEEecccc--cccCCCCCCCCEEEEEcCCCCcHHHHHHHH
Q psy1915 109 TELPVMVELASDF--LDRNTPVFRDDVCFFISQSGETADSLMALR 151 (361)
Q Consensus 109 ~g~~~~~~~~~e~--~~~~~~~~~~dlvI~iS~SG~t~e~~~a~~ 151 (361)
.++.+....+.+. .+.+..+..+++.|+||.+|.++-.-..++
T Consensus 109 ~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR 153 (223)
T PRK05562 109 LYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIG 153 (223)
T ss_pred cCCeEEEcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHHHHH
Confidence 4666665543322 124556788899999999999997665544
No 213
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=40.64 E-value=62 Score=27.43 Aligned_cols=56 Identities=9% Similarity=0.107 Sum_probs=39.5
Q ss_pred CCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCC-ch--hhhcccceEEcCCC
Q psy1915 302 NSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGD-TE--TQALATKTLEVPHT 357 (361)
Q Consensus 302 ~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~-~~--~~~~~d~~i~~p~~ 357 (361)
++.++|+..+.|+...++.+-+.+.....-+++++.++.+ -| +-+++|+++.+.+.
T Consensus 92 ~~~~lIvtdPkG~~is~vk~~L~~~~r~~~eV~v~iGSReGiP~GlfRfAd~VvDlaP~ 150 (173)
T PF14419_consen 92 KGEPLIVTDPKGDPISEVKDKLAEDLRYAKEVVVFIGSREGIPRGLFRFADYVVDLAPG 150 (173)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhCcEEEEEEEcccCCChhHHHHhhhhhhcCCc
Confidence 5688899999998877777777665555556666665432 23 56788999887653
No 214
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=39.98 E-value=1.6e+02 Score=31.10 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=37.1
Q ss_pred CCCCEEEEEc-CCCCc-HHHHHHHHHHHHc-CCeEEEEEcCCCCccccccCeeEEcccCC
Q psy1915 129 FRDDVCFFIS-QSGET-ADSLMALRYCKAR-GALIVGVTNTVGSSISRESHCGIHINAGP 185 (361)
Q Consensus 129 ~~~dlvI~iS-~SG~t-~e~~~a~~~ak~~-g~~~i~IT~~~~S~la~~ad~~l~~~~~~ 185 (361)
..-|++|++- ..-++ +-...-+..||++ |+++|.|-.+ .+..+..||..+.+..|.
T Consensus 168 ~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR-~t~Ta~~AD~~l~irPGT 226 (649)
T cd02752 168 KNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPR-FTRTAAKADLYVPIRSGT 226 (649)
T ss_pred hcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCC-CCchhHhcCEeeCcCCCh
Confidence 3456666653 43332 2334455667776 9999988765 688889999988876543
No 215
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=39.59 E-value=1.5e+02 Score=29.66 Aligned_cols=38 Identities=24% Similarity=0.161 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 321 NALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 321 ~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
..+.+.+++|+++|+|.... ++.+..+|..+.+++..|
T Consensus 181 ~~~~~ar~~g~klividpr~-s~ta~~Ad~~l~i~PGtD 218 (477)
T cd02759 181 HWLVAAMKRGAKLIVVDPRL-TWLAARADLWLPIRPGTD 218 (477)
T ss_pred HHHHHHHHCCCEEEEECCCC-ChhhHhhCeeeccCCCcH
Confidence 44555666788887776554 566678899888877655
No 216
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=39.53 E-value=62 Score=29.28 Aligned_cols=54 Identities=11% Similarity=-0.093 Sum_probs=40.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccc--cccCeeEEccc
Q psy1915 128 VFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSIS--RESHCGIHINA 183 (361)
Q Consensus 128 ~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la--~~ad~~l~~~~ 183 (361)
+.+-|++|++-.|+...-.....+.++ +|+++|.|.. ..++.. ..+|+.|.-++
T Consensus 173 ~~~aDlllvvGTSl~V~pa~~l~~~~~-~~~~~v~iN~-~~~~~~~~~~~d~~~~~~~ 228 (235)
T cd01408 173 KEEADLLIVIGTSLKVAPFASLPSRVP-SEVPRVLINR-EPVGHLGKRPFDVALLGDC 228 (235)
T ss_pred HhcCCEEEEECCCCeeccHHHHHHHHh-CCCcEEEEeC-CCCCCCCCCCcCEEEeCCH
Confidence 456799999999999998888888887 5888886554 445555 67887775443
No 217
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=39.00 E-value=57 Score=26.35 Aligned_cols=47 Identities=13% Similarity=0.206 Sum_probs=26.3
Q ss_pred CcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEec--CCCchhhhcccceEEc
Q psy1915 304 MPVIMILTRDPVYVKCMNALLQVIARDGRPIVICE--KGDTETQALATKTLEV 354 (361)
Q Consensus 304 ~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~--~~~~~~~~~~d~~i~~ 354 (361)
..++++++ |.. ...+++.++++|-++.++.. .....+...||..+.+
T Consensus 97 d~ivLvSg-D~D---f~~~v~~l~~~g~~V~v~~~~~~~s~~L~~~ad~f~~~ 145 (146)
T PF01936_consen 97 DTIVLVSG-DSD---FAPLVRKLRERGKRVIVVGAEDSASEALRSAADEFISI 145 (146)
T ss_dssp SEEEEE----GG---GHHHHHHHHHH--EEEEEE-GGGS-HHHHHHSSEEEE-
T ss_pred CEEEEEEC-cHH---HHHHHHHHHHcCCEEEEEEeCCCCCHHHHHhcCEEEeC
Confidence 44445444 432 35677788888988888873 2333577888988765
No 218
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=38.76 E-value=63 Score=29.40 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCc
Q psy1915 130 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSS 170 (361)
Q Consensus 130 ~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~ 170 (361)
+.|++|.+|-.+..+---.+=+..++.|.++|.||..+.-.
T Consensus 59 ~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k 99 (276)
T PF01993_consen 59 DPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPTKK 99 (276)
T ss_dssp --SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGG
T ss_pred CCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchh
Confidence 45899999999999999999999999999999999866444
No 219
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=37.72 E-value=1.5e+02 Score=29.75 Aligned_cols=31 Identities=23% Similarity=0.152 Sum_probs=20.7
Q ss_pred cCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEe
Q psy1915 74 RGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVEL 117 (361)
Q Consensus 74 ~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~ 117 (361)
+.++.++|.|.|+..+ +++ +.+ .|..+.+.+
T Consensus 7 ~~kv~V~GLG~sG~a~-----------a~~-L~~-~G~~v~v~D 37 (448)
T COG0771 7 GKKVLVLGLGKSGLAA-----------ARF-LLK-LGAEVTVSD 37 (448)
T ss_pred CCEEEEEecccccHHH-----------HHH-HHH-CCCeEEEEc
Confidence 3589999999999654 233 333 567766654
No 220
>PRK06756 flavodoxin; Provisional
Probab=37.71 E-value=65 Score=26.45 Aligned_cols=31 Identities=23% Similarity=0.140 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCcHHHHHHHH-HHHHcCCeEEE
Q psy1915 132 DVCFFISQSGETADSLMALR-YCKARGALIVG 162 (361)
Q Consensus 132 dlvI~iS~SG~t~e~~~a~~-~ak~~g~~~i~ 162 (361)
-++|-.|.+|+|+.+.+.+. .+++.|..+..
T Consensus 4 v~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~ 35 (148)
T PRK06756 4 LVMIFASMSGNTEEMADHIAGVIRETENEIEV 35 (148)
T ss_pred EEEEEECCCchHHHHHHHHHHHHhhcCCeEEE
Confidence 36778999999999999875 45667776543
No 221
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=37.69 E-value=1.6e+02 Score=32.86 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=33.6
Q ss_pred CcEEEEEcCCc--cHHHHHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 304 MPVIMILTRDP--VYVKCMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 304 ~~vi~i~~~g~--~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
.-+|++.+.+. +.......+.+.+++|+++|+|-... ++.++.+|..+.+.++.|
T Consensus 222 Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR~-t~tA~~AD~~l~irPGTD 278 (1009)
T TIGR01553 222 SDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPRF-NRTATVADLYAPIRSGSD 278 (1009)
T ss_pred CCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCCC-CchhHhhccEeCCCCChH
Confidence 34444444432 32333445556777888988886544 566677898887766654
No 222
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=37.43 E-value=35 Score=30.75 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=34.5
Q ss_pred CcHHHHHHHHHH-HHcCCeEEEEEcCCCCccccccCeeEEcccCC
Q psy1915 142 ETADSLMALRYC-KARGALIVGVTNTVGSSISRESHCGIHINAGP 185 (361)
Q Consensus 142 ~t~e~~~a~~~a-k~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~ 185 (361)
++.++++.++.. ++.|.++|.+|- +..++..||.++.+..|.
T Consensus 177 t~~~V~~ll~~~~~~~g~tii~VTH--d~~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 177 TAKEVLELLRELNKERGKTIIMVTH--DPELAKYADRVIELKDGK 219 (226)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEcC--CHHHHHhCCEEEEEeCCe
Confidence 477888988876 456999999997 678999999999887653
No 223
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=37.41 E-value=79 Score=30.85 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=36.5
Q ss_pred CCCCCEEEEEcCC-CCcHHH--HHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccCC
Q psy1915 128 VFRDDVCFFISQS-GETADS--LMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGP 185 (361)
Q Consensus 128 ~~~~dlvI~iS~S-G~t~e~--~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~ 185 (361)
+.+-|++|.+... .++.-. ....+.++++|+++|.|--. .++.+..+|..|.+..|.
T Consensus 109 ~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~-~t~~a~~ad~~i~i~PGt 168 (432)
T PF00384_consen 109 IENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPR-RTPTAAKADEWIPIRPGT 168 (432)
T ss_dssp GGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESS-B-HHGGGTSEEEEE-TTT
T ss_pred eeccceEEEcccCccccccccccccccccccCCcceEEEEec-cchhhhhccccccccccc
Confidence 3445666666543 222222 35566788889999999876 677999999999886553
No 224
>PRK08462 biotin carboxylase; Validated
Probab=37.35 E-value=47 Score=32.97 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=34.2
Q ss_pred EcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCC--ccccccCeeEEcc
Q psy1915 137 ISQSGETADSLMALRYCKARGALIVGVTNTVGS--SISRESHCGIHIN 182 (361)
Q Consensus 137 iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S--~la~~ad~~l~~~ 182 (361)
|-.+|+. -+.+++.||+.|..||++.+.++. |-.+.||..+.++
T Consensus 9 i~~~g~~--~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~ 54 (445)
T PRK08462 9 IANRGEI--ALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIG 54 (445)
T ss_pred EECCcHH--HHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeC
Confidence 3445544 779999999999999999766555 7778899888774
No 225
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=36.96 E-value=51 Score=29.89 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=36.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCc
Q psy1915 130 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSS 170 (361)
Q Consensus 130 ~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~ 170 (361)
+.|++|.+|-.+-.+---.|=+..++.|.++|.|+..+.-.
T Consensus 60 ~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K 100 (277)
T PRK00994 60 KPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKK 100 (277)
T ss_pred CCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccc
Confidence 56899999999999999999999999999999999876553
No 226
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=36.60 E-value=1.1e+02 Score=27.22 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=42.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEc
Q psy1915 128 VFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHI 181 (361)
Q Consensus 128 ~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~ 181 (361)
+.+.|++|.+-.|+...-..+.++.++++|+++|.|- ...+++.+.+|..|.-
T Consensus 162 ~~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN-~~~~~~~~~~~~~i~g 214 (224)
T cd01412 162 LAKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEIN-PEPTPLSPIADFAFRG 214 (224)
T ss_pred HHcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEEC-CCCCCCCCcCCEEEEC
Confidence 4577999999999999999999999999999988665 4467777777776653
No 227
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=35.64 E-value=1.9e+02 Score=28.17 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=20.3
Q ss_pred HcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 328 ARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 328 ~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
++|.++++|.. ..++..+.+|..+.+++..|
T Consensus 172 ~~g~~lividp-~~s~t~~~ad~~l~i~pgtd 202 (421)
T TIGR03129 172 REDRTVIVVDP-RKTDTAKLADYHLQIKPGSD 202 (421)
T ss_pred cCCCEEEEECC-CCCCcchhhcceeccCCCCc
Confidence 34566666644 44555677899888877655
No 228
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=35.54 E-value=48 Score=28.48 Aligned_cols=34 Identities=29% Similarity=0.219 Sum_probs=27.5
Q ss_pred CCCcHHHHH-HHHHHHHcCCeEEEEEcCCCCcccc
Q psy1915 140 SGETADSLM-ALRYCKARGALIVGVTNTVGSSISR 173 (361)
Q Consensus 140 SG~t~e~~~-a~~~ak~~g~~~i~IT~~~~S~la~ 173 (361)
-|.-++++. +++.||+.|.+-|.||++.+++-++
T Consensus 112 KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASr 146 (174)
T COG3981 112 KGYAKEMLKLALEKARELGIKKVLVTCDKDNIASR 146 (174)
T ss_pred cCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhh
Confidence 355566554 6899999999999999999887665
No 229
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=35.44 E-value=3.1e+02 Score=24.13 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=46.7
Q ss_pred CCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCcc-----CCCcEEEEEcCCccHHHHHHHHHHHHH
Q psy1915 254 QKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALID-----NSMPVIMILTRDPVYVKCMNALLQVIA 328 (361)
Q Consensus 254 ~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~-----~~~~vi~i~~~g~~~~~~~~~~~~~~~ 328 (361)
...+.|+|.-+. +.+.-.|+.|.++ ..|..+-|..|.+-... .-.++|++.+.. ...+++|+.+
T Consensus 61 ~~~ILfVgtk~~---~~~~V~~~A~~~g---~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~~-----~~~Av~EA~~ 129 (196)
T TIGR01012 61 PEDILVVSARIY---GQKPVLKFAKVTG---ARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPRA-----DHQALKEASE 129 (196)
T ss_pred CCeEEEEecCHH---HHHHHHHHHHHhC---CceECCeeCCCCCCCccccccCCCCEEEEECCcc-----ccHHHHHHHH
Confidence 567888888663 4455566666664 33445556666544332 123444433222 2457889999
Q ss_pred cCCcEEEEecCCC
Q psy1915 329 RDGRPIVICEKGD 341 (361)
Q Consensus 329 ~g~~~v~I~~~~~ 341 (361)
.|.++|++++...
T Consensus 130 l~IP~Iai~DTn~ 142 (196)
T TIGR01012 130 VGIPIVALCDTDN 142 (196)
T ss_pred cCCCEEEEeeCCC
Confidence 9999999998653
No 230
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=34.34 E-value=65 Score=27.65 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=36.0
Q ss_pred EEEEcCCCCc---HHHHHHHHHHHHcCCeEEEEEcCCCCccccccCee
Q psy1915 134 CFFISQSGET---ADSLMALRYCKARGALIVGVTNTVGSSISRESHCG 178 (361)
Q Consensus 134 vI~iS~SG~t---~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~ 178 (361)
+-.|...|+. ..+-+|++.|.+.|.-.|-|..+..-|++++-|+.
T Consensus 21 vrlIg~~GeqlGiv~~~eAL~lA~e~~LDLV~Ispna~PPVcKImDYG 68 (176)
T COG0290 21 VRLIGEDGEQLGIVSIEEALKLAEEAGLDLVEISPNAKPPVCKIMDYG 68 (176)
T ss_pred EEEECCCCcEEcceeHHHHHHHHHHcCCCEEEECCCCCCCeeEeeecc
Confidence 3444555553 35678999999999999999999999999988874
No 231
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=34.33 E-value=70 Score=27.56 Aligned_cols=37 Identities=8% Similarity=0.084 Sum_probs=30.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCc
Q psy1915 134 CFFISQSGETADSLMALRYCKARGALIVGVTNTVGSS 170 (361)
Q Consensus 134 vI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~ 170 (361)
..+-=.||+|+++++.++..+..|-+++.+....++.
T Consensus 6 i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~D~R 42 (176)
T PF00265_consen 6 ITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAIDTR 42 (176)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTT-EEEEEEESTSCC
T ss_pred EECCcCChhHHHHHHHHHHHHhCCCeEEEEEecccCc
Confidence 3445589999999999999999999999999877763
No 232
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=34.19 E-value=90 Score=28.27 Aligned_cols=52 Identities=15% Similarity=0.048 Sum_probs=41.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEE
Q psy1915 128 VFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIH 180 (361)
Q Consensus 128 ~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~ 180 (361)
+.+.|++|++-.|....-....++.++++|+++|.|- ...+++...+|..+.
T Consensus 175 ~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN-~~~~~~~~~~~~~i~ 226 (242)
T PRK00481 175 LEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEIN-LEPTPLDSLFDLVIH 226 (242)
T ss_pred HhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEEC-CCCCCCCCccCEEEE
Confidence 3466999999999999888899988999999977665 446777777776554
No 233
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=34.08 E-value=68 Score=30.65 Aligned_cols=38 Identities=8% Similarity=-0.055 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEc
Q psy1915 144 ADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHI 181 (361)
Q Consensus 144 ~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~ 181 (361)
.-....++.|++.|.+++++..++++|-.+.||..+..
T Consensus 9 ql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~ 46 (352)
T TIGR01161 9 QLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLA 46 (352)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeC
Confidence 33446677889999999999999999999999987643
No 234
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=33.71 E-value=49 Score=29.17 Aligned_cols=42 Identities=12% Similarity=0.126 Sum_probs=28.3
Q ss_pred CCceEEEecccc--cccCCCCCCCCEEEEEcCCCCcHHHHHHHH
Q psy1915 110 ELPVMVELASDF--LDRNTPVFRDDVCFFISQSGETADSLMALR 151 (361)
Q Consensus 110 g~~~~~~~~~e~--~~~~~~~~~~dlvI~iS~SG~t~e~~~a~~ 151 (361)
+..+......+. .+.+.....+++.|+||.+|.++-+-..++
T Consensus 94 ~~lvn~~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr 137 (202)
T PRK06718 94 NALFNVITDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIR 137 (202)
T ss_pred CCcEEECCCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHH
Confidence 556665544332 134556788999999999999997655444
No 235
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.65 E-value=60 Score=24.05 Aligned_cols=36 Identities=17% Similarity=-0.117 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcC
Q psy1915 129 FRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNT 166 (361)
Q Consensus 129 ~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~ 166 (361)
....++++|...+. +..+..+..++.|-+..-+|++
T Consensus 39 ~~a~vlvGi~~~~~--~~~~l~~~l~~~g~~~~dls~n 74 (81)
T cd04907 39 DYGRVLVGIQVPDA--DLDELKERLDALGYPYQEETDN 74 (81)
T ss_pred CceeEEEEEEeChH--HHHHHHHHHHHcCCCeEECCCC
Confidence 45679999999875 8889999999999998888875
No 236
>KOG2091|consensus
Probab=32.64 E-value=32 Score=32.46 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.5
Q ss_pred chhhhHHHHHHHHHHhhhccCCC
Q psy1915 10 PKTRLEIIELLIKGLKRLEYRGY 32 (361)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~~~~~ 32 (361)
.+-|++...|++++|++.||.|+
T Consensus 166 e~l~ekv~~tlv~~ck~~~fdGl 188 (392)
T KOG2091|consen 166 EALREKVGQTLVNFCKKHGFDGL 188 (392)
T ss_pred HHHHHHHHHHHHHHHHHcCCCee
Confidence 45689999999999999999994
No 237
>PTZ00430 glucose-6-phosphate isomerase; Provisional
Probab=32.58 E-value=1.7e+02 Score=30.23 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=18.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHH-HHHHcC
Q psy1915 131 DDVCFFISQSGETADSLMALR-YCKARG 157 (361)
Q Consensus 131 ~dlvI~iS~SG~t~e~~~a~~-~ak~~g 157 (361)
.++.+=.|.-.=+.++++++. .|++.+
T Consensus 42 ~~l~lD~sk~~v~~~~~~~l~~la~~~~ 69 (552)
T PTZ00430 42 KGVTLDLSRQRLDEETLKLLIELAEEAK 69 (552)
T ss_pred CCEEEEccCCCCCHHHHHHHHHHHHhCC
Confidence 456777777777888888775 455543
No 238
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=32.33 E-value=63 Score=27.73 Aligned_cols=51 Identities=20% Similarity=0.124 Sum_probs=39.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccC---eeEEccc
Q psy1915 133 VCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESH---CGIHINA 183 (361)
Q Consensus 133 lvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad---~~l~~~~ 183 (361)
.+|..-.+--|+|+.+-+..+|+.|++++.++|+..+..+..+. +..+..+
T Consensus 38 TLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A 91 (175)
T COG2179 38 TLVPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRA 91 (175)
T ss_pred ceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceeecc
Confidence 34555566679999999999999999999999998888876653 4444433
No 239
>TIGR02164 torA trimethylamine-N-oxide reductase TorA. This very narrowly defined family represents TorA, part of a family of related molybdoenzymes that include biotin sulfoxide reductases, dimethyl sulfoxide reductases, and at least two different subfamilies of trimethylamine-N-oxide reductases. A single enzyme from the larger family may have more than one activity. TorA typically is located in the periplasm, has a Tat (twin-arginine translocation)-dependent signal sequence, and is encoded in a torCAD operon.
Probab=31.65 E-value=1.5e+02 Score=32.07 Aligned_cols=95 Identities=9% Similarity=0.096 Sum_probs=49.4
Q ss_pred CCeEEEEEcCCCCccccc-cCeeEEcccCCCcccccchhHHHHHHHHHHHHHHHhhhhcchHHH-------HHHHHHHHH
Q psy1915 157 GALIVGVTNTVGSSISRE-SHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTR-------RNEIIKGLK 228 (361)
Q Consensus 157 g~~~i~IT~~~~S~la~~-ad~~l~~~~~~e~~~~~t~s~t~~~~~l~~l~~~~~~~~~~~~~~-------~~~~~~~l~ 228 (361)
|+++|.|--+ -|+.++. +|..|.+..|.+ ... ++.++-+.+.....+ .+. ++++.+.+.
T Consensus 251 gaklIvIDPr-~t~tA~~~ad~~l~irPGTD-------~AL----~lam~~vii~e~l~D-~~Fi~~~t~Gfe~~~~~l~ 317 (822)
T TIGR02164 251 EINVISIDPV-VTKTQAYLGCEHLYVNPQTD-------VAL----MLALAHTLYSENLYD-KKFIEGYCLGFEEFLPYVL 317 (822)
T ss_pred CceEEEECCC-CCchhhhccCeEeccCCCcH-------HHH----HHHHHHHHHHCCCcc-HHHHHHhcccHHHHHHHhc
Confidence 4898888765 6777775 788777755433 111 111111112211111 111 222333332
Q ss_pred -------HHHHHHHHHHc-ccHHHHHHHHHHhcCCeEEEEeccC
Q psy1915 229 -------VIHEQIREVLQ-MDSEVQQLAKEMYEQKSMLLMGRGY 264 (361)
Q Consensus 229 -------~l~~~~~~~l~-~~~~~~~~a~~l~~~~~i~~iG~G~ 264 (361)
.-|+.+.++-. ..+.++++|+.+...+..+++|.|.
T Consensus 318 ~~~~g~~~tpe~aa~itGV~ae~I~~lA~~~a~~~~~~~~g~g~ 361 (822)
T TIGR02164 318 GSKDGVAKTPEWAAKICGVEAEVIRDLARMLVKGRTQLIFGWCI 361 (822)
T ss_pred cccCCCcCCHHHHHHHHCcCHHHHHHHHHHHHhcCCEEEEeccc
Confidence 12444444443 3567999999998877666666663
No 240
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=31.40 E-value=2e+02 Score=31.12 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=34.1
Q ss_pred CCCEEEEEc-CCCCcH----HHHHHHHHHH-HcCCeEEEEEcCCCCccc-cccCeeEEcccCCC
Q psy1915 130 RDDVCFFIS-QSGETA----DSLMALRYCK-ARGALIVGVTNTVGSSIS-RESHCGIHINAGPE 186 (361)
Q Consensus 130 ~~dlvI~iS-~SG~t~----e~~~a~~~ak-~~g~~~i~IT~~~~S~la-~~ad~~l~~~~~~e 186 (361)
.-|++|.+. +.-+|. .....+..++ ++|+++|.|--+ -|+.+ ..||..|.+..|.+
T Consensus 231 ~ad~il~~G~N~~~t~~~~~~~~~~~~~a~~~~G~klivIDPr-~t~taa~~AD~~l~irPGTD 293 (814)
T PRK14990 231 NSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPR-YTDTGAGREDEWIPIRPGTD 293 (814)
T ss_pred hCCEEEEECCChHHhcCCCCcHHHHHHHHHHHCCCeEEEECCC-CCCcccccCCeEECCCCCcH
Confidence 446766664 323331 1223444455 579999998554 67776 58999988765433
No 241
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=31.22 E-value=51 Score=19.94 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=16.3
Q ss_pred chhhhHH-------HHHHHHHHhhhccCCC
Q psy1915 10 PKTRLEI-------IELLIKGLKRLEYRGY 32 (361)
Q Consensus 10 ~~~~~~~-------~~~~~~~~~~l~~~~~ 32 (361)
|-||+|| .|||.|..++|.-+|.
T Consensus 2 ~mtr~diA~~lG~t~ETVSR~l~~l~~~gl 31 (32)
T PF00325_consen 2 PMTRQDIADYLGLTRETVSRILKKLERQGL 31 (32)
T ss_dssp E--HHHHHHHHTS-HHHHHHHHHHHHHTTS
T ss_pred CcCHHHHHHHhCCcHHHHHHHHHHHHHcCC
Confidence 4577777 4799999998877664
No 242
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=31.10 E-value=1.7e+02 Score=30.23 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=33.7
Q ss_pred CcEEEEEcCCc--cHHHHHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 304 MPVIMILTRDP--VYVKCMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 304 ~~vi~i~~~g~--~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
.-+|++.+.+. +.......+.+.+++|+++|+|.... ++.++.+|..+.+.++.|
T Consensus 160 ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr~-s~ta~~Ad~~l~irPGTD 216 (567)
T cd02765 160 AKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPVY-STTAAKADQWVPIRPGTD 216 (567)
T ss_pred CcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCCC-CcchhhcCEEeccCCCch
Confidence 34444444432 22223445556777888888886554 566678898888777655
No 243
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=31.04 E-value=5.1e+02 Score=25.27 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCccccccCeeEEcccC
Q psy1915 158 ALIVGVTNTVGSSISRESHCGIHINAG 184 (361)
Q Consensus 158 ~~~i~IT~~~~S~la~~ad~~l~~~~~ 184 (361)
-+++.+..-..++-+++||..+.+..+
T Consensus 177 dRtvIvVD~RkT~TAklad~~~qi~p~ 203 (429)
T COG1029 177 DRTVIVVDPRKTATAKLADNHVQIKPN 203 (429)
T ss_pred cceEEEEecCcCchhhhhhheEecCCC
Confidence 345556666789999999999888654
No 244
>CHL00199 infC translation initiation factor 3; Provisional
Probab=30.61 E-value=76 Score=27.59 Aligned_cols=46 Identities=24% Similarity=0.258 Sum_probs=37.2
Q ss_pred EEEEEcCCCC---cHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCee
Q psy1915 133 VCFFISQSGE---TADSLMALRYCKARGALIVGVTNTVGSSISRESHCG 178 (361)
Q Consensus 133 lvI~iS~SG~---t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~ 178 (361)
-|-.|...|+ -..+-+|++.|++.|...|-|..+..-|++++.|+.
T Consensus 26 ~VrlI~~~G~~lGv~~~~eAl~~A~~~~lDLVeVs~~a~PPVCKImdyg 74 (182)
T CHL00199 26 KVRVIDDSGEQLGIFTSEQAIQLAANQGLDLVLVSEKSDPPVCRIIDYG 74 (182)
T ss_pred EEEEECCCCcCCCceeHHHHHHHHHHcCCCEEEECCCCCCCeEEEeehH
Confidence 4555566666 466789999999999999999999888999887763
No 245
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=30.13 E-value=3.9e+02 Score=23.67 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=48.5
Q ss_pred cCCeEEEEeccCCHHHHHHHHHHHHHhhCcceEEEecCCccccCccCcc-----CCCcEEEEEcCCccHHHHHHHHHHHH
Q psy1915 253 EQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALID-----NSMPVIMILTRDPVYVKCMNALLQVI 327 (361)
Q Consensus 253 ~~~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~~~~E~~Hgp~~~i~-----~~~~vi~i~~~g~~~~~~~~~~~~~~ 327 (361)
....+.|+|.-+ -+.+.-.|+.+.++. .|...-|..|.+-... .-.++|++.+.. ...+++|+.
T Consensus 66 ~~~~ILfVgTk~---~~~~~v~k~A~~~g~---~~v~~RWlgG~LTN~~~~~~~~Pdliiv~dp~~-----~~~AI~EA~ 134 (204)
T PRK04020 66 EPEKILVVSSRQ---YGQKPVQKFAEVVGA---KAITGRFIPGTLTNPSLKGYIEPDVVVVTDPRG-----DAQAVKEAI 134 (204)
T ss_pred cCCeEEEEeCCH---HHHHHHHHHHHHhCC---eeecCccCCCcCcCcchhccCCCCEEEEECCcc-----cHHHHHHHH
Confidence 456788888765 355666667766653 3555567666543221 123444443322 245788899
Q ss_pred HcCCcEEEEecCCC
Q psy1915 328 ARDGRPIVICEKGD 341 (361)
Q Consensus 328 ~~g~~~v~I~~~~~ 341 (361)
+.|.++|++++...
T Consensus 135 kl~IP~IaivDTn~ 148 (204)
T PRK04020 135 EVGIPVVALCDTDN 148 (204)
T ss_pred HhCCCEEEEEeCCC
Confidence 99999999998653
No 246
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=30.08 E-value=45 Score=27.00 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=33.1
Q ss_pred HHHHHHHhcC-CeEEEEeccCCHHHHHHHHHHHHHhhCcceEEE
Q psy1915 245 QQLAKEMYEQ-KSMLLMGRGYNYATCMEGALKIKELTYMHSEGI 287 (361)
Q Consensus 245 ~~~a~~l~~~-~~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~ 287 (361)
+++++.+.++ +.++++|.|....-+.+...+|-|..++|....
T Consensus 2 ~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t 45 (137)
T PF00205_consen 2 DEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATT 45 (137)
T ss_dssp HHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEec
Confidence 4566666664 678999999988888999999999999887544
No 247
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=29.82 E-value=77 Score=27.41 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=35.5
Q ss_pred EEEEEcCCCC---cHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCe
Q psy1915 133 VCFFISQSGE---TADSLMALRYCKARGALIVGVTNTVGSSISRESHC 177 (361)
Q Consensus 133 lvI~iS~SG~---t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~ 177 (361)
-|-.|...|+ ...+-+|++.|++.|...|-|..+..-|++++.|+
T Consensus 21 ~Vrli~~dG~~lgv~~~~eAl~~A~~~~lDLV~v~~~~~PPVckI~dy 68 (177)
T PRK00028 21 EVRLIGDDGEQLGIVSTREALELAEEAGLDLVEISPNAKPPVCKIMDY 68 (177)
T ss_pred EEEEECCCCcCCCceeHHHHHHHHHHcCCCEEEECCCCCCCEEEEEeH
Confidence 3445555555 46778899999999999999998888888887765
No 248
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=29.79 E-value=24 Score=35.21 Aligned_cols=47 Identities=17% Similarity=0.330 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhccCccceeeeccC---CcEEEEecccccccccc
Q psy1915 43 DHLARHIAIMEGAFALCFKSKLFPGECVATRRG---SPLLVGIKTKTRLATDH 92 (361)
Q Consensus 43 d~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g---~i~~~G~G~S~~~a~~~ 92 (361)
+++++.+++|+++|+.++.. .+.++..+++ |++++|.+....+|++.
T Consensus 146 ~ai~~~~~~l~G~yal~i~~---~~~l~a~RD~~GirPL~~G~~~~~~~ASE~ 195 (442)
T PRK08341 146 EAMREVFNEVKGAYSVAILF---DGKIIVARDPVGFRPLSYGEGDGHYFASED 195 (442)
T ss_pred HHHHHHHHhccCceEEEEEE---CCEEEEEEcCCCceEEEEEECCEEEEEeCc
Confidence 57788889999999988753 3678899988 99999997767777654
No 249
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.76 E-value=1.4e+02 Score=29.49 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=12.2
Q ss_pred CCcEEEEeccccccc
Q psy1915 75 GSPLLVGIKTKTRLA 89 (361)
Q Consensus 75 g~i~~~G~G~S~~~a 89 (361)
.+++++|+|.||.-+
T Consensus 8 ~~v~viG~G~sG~s~ 22 (438)
T PRK04663 8 KNVVVVGLGITGLSV 22 (438)
T ss_pred ceEEEEeccHHHHHH
Confidence 468999999998654
No 250
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=28.63 E-value=1e+02 Score=26.06 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeE
Q psy1915 133 VCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGI 179 (361)
Q Consensus 133 lvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l 179 (361)
+++--|.+|+|+-+.+++..+-.. ..++.+...+.. ..-.|+++
T Consensus 1 lIvYsS~TGNTkkvA~aI~~~l~~-~~~~~~~~~~~~--~~~yD~i~ 44 (160)
T PF12641_consen 1 LIVYSSRTGNTKKVAEAIAEALGA-KDIVSVEEPPED--LEDYDLIF 44 (160)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC-ceeEeccccccC--CCCCCEEE
Confidence 477889999999999988665432 366666654433 33345544
No 251
>PRK05723 flavodoxin; Provisional
Probab=28.54 E-value=1.6e+02 Score=24.53 Aligned_cols=31 Identities=16% Similarity=-0.060 Sum_probs=24.2
Q ss_pred EEEEEcCCCCcHHHHHHH-HHHHHcCCeEEEE
Q psy1915 133 VCFFISQSGETADSLMAL-RYCKARGALIVGV 163 (361)
Q Consensus 133 lvI~iS~SG~t~e~~~a~-~~ak~~g~~~i~I 163 (361)
.++.-|++|+|+++-+.+ +.+++.|..+..+
T Consensus 4 ~I~ygS~tG~ae~~A~~la~~l~~~g~~~~~~ 35 (151)
T PRK05723 4 AILSGSVYGTAEEVARHAESLLKAAGFEAWHN 35 (151)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHHCCCceeec
Confidence 466789999999999888 5677778776543
No 252
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=28.53 E-value=2.3e+02 Score=27.90 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=10.3
Q ss_pred CcEEEEeccccc
Q psy1915 76 SPLLVGIKTKTR 87 (361)
Q Consensus 76 ~i~~~G~G~S~~ 87 (361)
+++++|+|.||.
T Consensus 1 ~~~~iG~G~~G~ 12 (433)
T TIGR01087 1 KILILGLGKTGR 12 (433)
T ss_pred CEEEEEeCHhHH
Confidence 478999999987
No 253
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=28.28 E-value=3.2e+02 Score=26.62 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCcEEEEecCCC
Q psy1915 319 CMNALLQVIARDGRPIVICEKGD 341 (361)
Q Consensus 319 ~~~~~~~~~~~g~~~v~I~~~~~ 341 (361)
....+++.+++|+++++|....+
T Consensus 170 ~~~~l~~a~~~g~k~i~idp~~~ 192 (414)
T cd02772 170 LAQRLRQAVKKGAKLSAINPADD 192 (414)
T ss_pred HHHHHHHHHHcCCEEEEEeCccc
Confidence 33445666778999888876543
No 254
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=28.28 E-value=68 Score=26.91 Aligned_cols=32 Identities=22% Similarity=0.142 Sum_probs=27.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEc
Q psy1915 134 CFFISQSGETADSLMALRYCKARGALIVGVTN 165 (361)
Q Consensus 134 vI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~ 165 (361)
+++.+.||+|.-+..+++.++++|.++..|-.
T Consensus 4 i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~ 35 (155)
T TIGR00176 4 IVGPKNSGKTTLIERLVKALKARGYRVATIKH 35 (155)
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 56789999999999999999999887776654
No 255
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=28.05 E-value=1e+02 Score=30.64 Aligned_cols=41 Identities=24% Similarity=0.203 Sum_probs=32.9
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEEcC--CCCccccccCeeEEc
Q psy1915 141 GETADSLMALRYCKARGALIVGVTNT--VGSSISRESHCGIHI 181 (361)
Q Consensus 141 G~t~e~~~a~~~ak~~g~~~i~IT~~--~~S~la~~ad~~l~~ 181 (361)
|...--+.+++.||+.|.+||++.+. .++|-.++||..+.+
T Consensus 9 g~g~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~ 51 (449)
T TIGR00514 9 NRGEIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCI 51 (449)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEc
Confidence 44455788999999999999999874 456778889987765
No 256
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=28.04 E-value=88 Score=26.74 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=35.2
Q ss_pred EEEEEcCCCCc---HHHHHHHHHHHHcCCeEEEEEcCCCCccccccCee
Q psy1915 133 VCFFISQSGET---ADSLMALRYCKARGALIVGVTNTVGSSISRESHCG 178 (361)
Q Consensus 133 lvI~iS~SG~t---~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~ 178 (361)
-|-.|...|+. -.+-+|++.|++.|...|-|..+.+-|++++.|+.
T Consensus 9 ~Vrli~~dG~~lgv~~~~eAl~~A~~~~lDLVev~~~a~PPVckImdy~ 57 (165)
T TIGR00168 9 EVRLIDENGEQLGIVSREEALEIAEEAGLDLVLISPNAKPPVCKIMDYG 57 (165)
T ss_pred EEEEECCCCcCCCcccHHHHHHHHHHcCCcEEEECCCCCCCEEEEeeHH
Confidence 34455566643 44889999999999999999988888888876653
No 257
>PRK05569 flavodoxin; Provisional
Probab=27.58 E-value=1.2e+02 Score=24.51 Aligned_cols=30 Identities=17% Similarity=0.130 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH-HHHcCCeE
Q psy1915 131 DDVCFFISQSGETADSLMALRY-CKARGALI 160 (361)
Q Consensus 131 ~dlvI~iS~SG~t~e~~~a~~~-ak~~g~~~ 160 (361)
+-++|-.|.+|+|+.+.+++.. +++.|+.+
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v 33 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEV 33 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeE
Confidence 3478889999999999999754 66677653
No 258
>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional
Probab=27.46 E-value=2.1e+02 Score=30.98 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=23.4
Q ss_pred HHHHHHHHc-ccHHHHHHHHHHhcCCeEEEEeccC
Q psy1915 231 HEQIREVLQ-MDSEVQQLAKEMYEQKSMLLMGRGY 264 (361)
Q Consensus 231 ~~~~~~~l~-~~~~~~~~a~~l~~~~~i~~iG~G~ 264 (361)
|+.+.++-. ..+.++++|+.+...+..++.|.|.
T Consensus 330 pe~aa~itGV~ae~I~~lA~~~a~~~~~i~~g~g~ 364 (825)
T PRK15102 330 PEWAEKICGIDAETIRELARQMAKGRTQIIAGWCI 364 (825)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhcCCEEEEeech
Confidence 555555544 3567999999998876666666664
No 259
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=27.46 E-value=3.3e+02 Score=29.57 Aligned_cols=57 Identities=9% Similarity=0.026 Sum_probs=34.4
Q ss_pred CCCCEEEEEcCC-CCcHH-HHHHHHHHH--HcCCeEEEEEcCCCCccccccCeeEEcccCCC
Q psy1915 129 FRDDVCFFISQS-GETAD-SLMALRYCK--ARGALIVGVTNTVGSSISRESHCGIHINAGPE 186 (361)
Q Consensus 129 ~~~dlvI~iS~S-G~t~e-~~~a~~~ak--~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e 186 (361)
..-|++|.+... .+|.- ...-+..++ ++|+++|.|-- ..++.+..||..|.+..|.+
T Consensus 205 ~~ad~il~~G~Np~~~~p~~~~~i~~a~~~~~GakliviDP-r~t~ta~~Ad~~l~irPGTD 265 (830)
T TIGR01706 205 EAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKVKVVVLST-FTHRSFDLADIGIIFKPQTD 265 (830)
T ss_pred hhCCEEEEEcCCcchhCCHHHHHHHHHHhccCCCEEEEECC-CCCchhHHhCeeeccCCCCH
Confidence 345777777443 33321 112222233 46999998854 46788899999888765543
No 260
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=27.25 E-value=75 Score=31.73 Aligned_cols=31 Identities=19% Similarity=0.071 Sum_probs=26.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcCCeEEEEE
Q psy1915 134 CFFISQSGETADSLMALRYCKARGALIVGVT 164 (361)
Q Consensus 134 vI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT 164 (361)
+++-|.||+|+-+.+++..++++|.+|-.|=
T Consensus 6 IvG~sgSGKTTLiekLI~~L~~rG~rVavIK 36 (452)
T PRK14495 6 IIGWKDAGKTGLVERLVAAIAARGFSVSTVK 36 (452)
T ss_pred EEecCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 5566899999999999999999998776654
No 261
>PRK08105 flavodoxin; Provisional
Probab=27.20 E-value=1.3e+02 Score=24.98 Aligned_cols=33 Identities=12% Similarity=0.002 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHH-HHHHcCCeEEEEEc
Q psy1915 133 VCFFISQSGETADSLMALR-YCKARGALIVGVTN 165 (361)
Q Consensus 133 lvI~iS~SG~t~e~~~a~~-~ak~~g~~~i~IT~ 165 (361)
.++--|++|+|.++-+.+. .+++.|..+..+..
T Consensus 5 ~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~ 38 (149)
T PRK08105 5 GIFVGTVYGNALLVAEEAEAILTAQGHEVTLFED 38 (149)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHhCCCceEEech
Confidence 5677899999999998775 46677877665543
No 262
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=27.07 E-value=74 Score=29.51 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHHHcCCeEEEEEcCCC
Q psy1915 143 TADSLMALRYCKARGALIVGVTNTVG 168 (361)
Q Consensus 143 t~e~~~a~~~ak~~g~~~i~IT~~~~ 168 (361)
-+...++++.++++|.+++-+||++.
T Consensus 26 ipga~e~l~~L~~~g~~~iflTNn~~ 51 (269)
T COG0647 26 IPGAAEALKRLKAAGKPVIFLTNNST 51 (269)
T ss_pred CchHHHHHHHHHHcCCeEEEEeCCCC
Confidence 36789999999999999999999853
No 263
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=26.93 E-value=1e+02 Score=31.72 Aligned_cols=46 Identities=20% Similarity=0.176 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCC-eEEEEeccCCHHHHHHHHHHHHHhhCcceEEE
Q psy1915 242 SEVQQLAKEMYEQK-SMLLMGRGYNYATCMEGALKIKELTYMHSEGI 287 (361)
Q Consensus 242 ~~~~~~a~~l~~~~-~i~~iG~G~~~~~A~e~alkl~E~~~~~a~~~ 287 (361)
+.+++.++.|.+++ .++++|.|...+-|.+-...|-|..++|...-
T Consensus 188 ~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~~Pv~~t 234 (550)
T COG0028 188 EAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVTT 234 (550)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccccHHHHHHHHHHHCCCEEEc
Confidence 56888899999875 78999999999999999999999999887643
No 264
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=26.86 E-value=2.3e+02 Score=28.78 Aligned_cols=54 Identities=11% Similarity=0.074 Sum_probs=32.8
Q ss_pred CCCEEEEEcCC-CCcH----HHHHHHHHHHHcCC-----eEEEEEcCCCCccccccCeeEEcccC
Q psy1915 130 RDDVCFFISQS-GETA----DSLMALRYCKARGA-----LIVGVTNTVGSSISRESHCGIHINAG 184 (361)
Q Consensus 130 ~~dlvI~iS~S-G~t~----e~~~a~~~ak~~g~-----~~i~IT~~~~S~la~~ad~~l~~~~~ 184 (361)
+-|++|.+... -+|. .....+..+|++|+ ++|.|--. .|..+..||..|.+..|
T Consensus 196 ~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviDPr-~s~ta~~Ad~~l~irPG 259 (524)
T cd02764 196 KAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAESV-YTLTGANADVRLAIRPS 259 (524)
T ss_pred HCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEecC-CCchhhhhcceeccCcc
Confidence 34666655433 3331 12344445666554 88888654 78889999998887654
No 265
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=26.52 E-value=3.1e+02 Score=29.49 Aligned_cols=123 Identities=15% Similarity=0.258 Sum_probs=65.6
Q ss_pred CCCEEEEEcC-CCCc-HHHHHHHHHHHH-cCCeEEEEEcCCCCccccccCeeEEcccCCCcccccchhHHHHHHHHHHHH
Q psy1915 130 RDDVCFFISQ-SGET-ADSLMALRYCKA-RGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFA 206 (361)
Q Consensus 130 ~~dlvI~iS~-SG~t-~e~~~a~~~ak~-~g~~~i~IT~~~~S~la~~ad~~l~~~~~~e~~~~~t~s~t~~~~~l~~l~ 206 (361)
..|++++|-. .-++ +-+-.-++.|++ +|.+.|.+--+ ...|++.||+.+....|.... ... -+.-+++.
T Consensus 420 ~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~D~R-~~emaerAdlf~~pkpGtd~a------~l~-Avakyiid 491 (978)
T COG3383 420 GADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVIDPR-KHEMAERADLFLHPKPGTDLA------WLT-AVAKYIID 491 (978)
T ss_pred hCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEeccc-hhHHHHhhhcccCCCCCccHH------HHH-HHHHHHHh
Confidence 4566665533 2222 233445666666 89999988765 688999999877654332211 110 01112221
Q ss_pred -----HHHhhhhcchHHHHHHHHHHHHHH-HHHHHHHHc-ccHHHHHHHHHHhcCCeE-EEEecc
Q psy1915 207 -----LVMCEDRISLQTRRNEIIKGLKVI-HEQIREVLQ-MDSEVQQLAKEMYEQKSM-LLMGRG 263 (361)
Q Consensus 207 -----~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~l~-~~~~~~~~a~~l~~~~~i-~~iG~G 263 (361)
-.+...+.+ .++++.+.+... ++..++.-. ..+.+.++|..+.+++.+ ++.|-|
T Consensus 492 eGl~D~~Fi~er~~---~f~d~~~~l~~~tle~~E~~TGv~~e~l~~~A~~~~~a~~~ai~w~mG 553 (978)
T COG3383 492 EGLHDEAFIRERVD---WFEDYAKSLAPFTLEYAEKATGVPAEDLRKAAEMIAEAKSVAILWGMG 553 (978)
T ss_pred CCcchHHHHHhhcc---cHHHHHHHhhccCHHHHHhhcCCCHHHHHHHHHHHhccCceEEEEEcc
Confidence 122222222 245555555443 333333333 356789999999988654 444554
No 266
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=26.32 E-value=1.2e+02 Score=24.27 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=28.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH-HHHcCCeE--EEEEcCCCCccccccCeeEE
Q psy1915 133 VCFFISQSGETADSLMALRY-CKARGALI--VGVTNTVGSSISRESHCGIH 180 (361)
Q Consensus 133 lvI~iS~SG~t~e~~~a~~~-ak~~g~~~--i~IT~~~~S~la~~ad~~l~ 180 (361)
++|-.|.+|+|+.+.+++.. +++.|..+ +-++......+.+ +|..++
T Consensus 2 ~Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~~~l~~-~d~iil 51 (140)
T TIGR01753 2 LIVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADADAEDLLS-YDAVLL 51 (140)
T ss_pred EEEEECCCcHHHHHHHHHHHHHHhcCCeEEEEEcccCCHHHHhc-CCEEEE
Confidence 57889999999999998765 45556544 3443332223333 455443
No 267
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=25.87 E-value=4.7e+02 Score=28.38 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=21.8
Q ss_pred HcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 328 ARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 328 ~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
++|+++|+|.... ++.++.+|..+.+-++.|
T Consensus 235 ~~G~kiiviDPr~-t~ta~~ad~~l~irPGtD 265 (830)
T PRK13532 235 NPDVKVAVLSTFE-HRSFELADNGIIFTPQTD 265 (830)
T ss_pred CCCCeEEEECCCC-CchhHhcCeeeccCCCCc
Confidence 4688888886543 556677898887766655
No 268
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=25.84 E-value=4.9e+02 Score=27.93 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=33.2
Q ss_pred CCCEEEEE-cCCCCcHH-----HHHHHHHHHHcCCeEEEEEcCCCCccc---cccCeeEEcccCC
Q psy1915 130 RDDVCFFI-SQSGETAD-----SLMALRYCKARGALIVGVTNTVGSSIS---RESHCGIHINAGP 185 (361)
Q Consensus 130 ~~dlvI~i-S~SG~t~e-----~~~a~~~ak~~g~~~i~IT~~~~S~la---~~ad~~l~~~~~~ 185 (361)
.-|++|.+ |+..++.- ....++..+++|+++|.|--+ -+..+ ..||..|.+..|.
T Consensus 211 ~ad~il~~GsN~a~~~~~~~~~~~~l~~a~~~~G~KlVVVDPr-~t~ta~~~~~Ad~wlpIrPGT 274 (735)
T cd02758 211 NAEFALFIGTSPAQAGNPFKRQARRLAEARTEGNFKYVVVDPV-LPNTTSAAGENIRWVPIKPGG 274 (735)
T ss_pred hCcEEEEeCCCHHHhCCCcchHHHHHHHHHHhCCCEEEEECCC-CCccccccccCCEEECCCCCc
Confidence 34666655 34344432 233333333479999988765 55566 8899988876543
No 269
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=25.75 E-value=4.3e+02 Score=28.58 Aligned_cols=35 Identities=6% Similarity=-0.038 Sum_probs=22.8
Q ss_pred HHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 325 QVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 325 ~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
..+++|+++|+|........++.+|..+.+.+..|
T Consensus 401 a~k~~GakiivIDPr~t~t~a~~Ad~~l~irPGtD 435 (797)
T PRK07860 401 AARKHGLKVYSIAPFATRGLEKMGGTLLRTAPGGE 435 (797)
T ss_pred HHHhCCCEEEEECCCCchhhhhhhhceeccCCCcH
Confidence 34567888888866554335566788777666544
No 270
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=25.66 E-value=1.3e+02 Score=25.94 Aligned_cols=50 Identities=10% Similarity=0.063 Sum_probs=34.8
Q ss_pred CCccccCccCccCCCcEEEEEcCCc--cHHHHHHHHHHHHHcCCcEEEEecC
Q psy1915 290 GELKHGPLALIDNSMPVIMILTRDP--VYVKCMNALLQVIARDGRPIVICEK 339 (361)
Q Consensus 290 ~E~~Hgp~~~i~~~~~vi~i~~~g~--~~~~~~~~~~~~~~~g~~~v~I~~~ 339 (361)
-+.+|+|+..+++.+.++.-..... -.+.+.+.++.++++|.++.++|+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~ 70 (174)
T TIGR01685 19 ISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWN 70 (174)
T ss_pred ccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCC
Confidence 3677889888887776554433332 2356778888898888887777766
No 271
>PRK09271 flavodoxin; Provisional
Probab=25.21 E-value=3.8e+02 Score=22.28 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHH-HHHHHcCCeE
Q psy1915 133 VCFFISQSGETADSLMAL-RYCKARGALI 160 (361)
Q Consensus 133 lvI~iS~SG~t~e~~~a~-~~ak~~g~~~ 160 (361)
+++..|.+|+|+.+.+.+ +.+++.|..+
T Consensus 4 ~IvY~S~tGnTe~~A~~ia~~l~~~g~~v 32 (160)
T PRK09271 4 LLAYASLSGNTREVAREIEERCEEAGHEV 32 (160)
T ss_pred EEEEEcCCchHHHHHHHHHHHHHhCCCee
Confidence 678899999999999987 4567777654
No 272
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=25.09 E-value=1.6e+02 Score=25.90 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=39.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccc--cccCeeE
Q psy1915 128 VFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSIS--RESHCGI 179 (361)
Q Consensus 128 ~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la--~~ad~~l 179 (361)
+...|++|++-.|.....+...++.++++|++++.|--. ..+.. ..+|..+
T Consensus 167 ~~~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~-~~~~~~~~~~~~~~ 219 (222)
T cd00296 167 LLEADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINRE-PTPADALKKADLVI 219 (222)
T ss_pred HhcCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCC-CCCCCCCCcceEEE
Confidence 345799999999999999999999999889988876544 44555 4556544
No 273
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=25.08 E-value=1.3e+02 Score=29.02 Aligned_cols=36 Identities=11% Similarity=-0.007 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcc
Q psy1915 147 LMALRYCKARGALIVGVTNTVGSSISRESHCGIHIN 182 (361)
Q Consensus 147 ~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~ 182 (361)
...+..|++.|.+++.+..++++|-.+.||..+..+
T Consensus 15 ~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~ 50 (372)
T PRK06019 15 RMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVAD 50 (372)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecC
Confidence 445567889999999999999999999999877654
No 274
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=25.05 E-value=89 Score=27.01 Aligned_cols=42 Identities=17% Similarity=0.118 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccC
Q psy1915 143 TADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAG 184 (361)
Q Consensus 143 t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~ 184 (361)
...+.+.++..+++|..+|.+|.+....+.+.||.++.+..|
T Consensus 147 ~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G 188 (194)
T cd03213 147 ALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQG 188 (194)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCC
Confidence 456667777776667777777766544677889988887654
No 275
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=24.95 E-value=1.3e+02 Score=26.46 Aligned_cols=36 Identities=0% Similarity=-0.217 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEec
Q psy1915 303 SMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICE 338 (361)
Q Consensus 303 ~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~ 338 (361)
++.+++++.+|.=+.-.....+.+.+.|..||.|-+
T Consensus 2 Dt~~v~~SGDgGw~~~d~~~a~~l~~~G~~VvGvds 37 (192)
T PF06057_consen 2 DTLAVFFSGDGGWRDLDKQIAEALAKQGVPVVGVDS 37 (192)
T ss_pred CEEEEEEeCCCCchhhhHHHHHHHHHCCCeEEEech
Confidence 567777777765433334556667778888888866
No 276
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=24.94 E-value=1.2e+02 Score=27.06 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=38.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEc
Q psy1915 128 VFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHI 181 (361)
Q Consensus 128 ~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~ 181 (361)
+.+.|++|++-.|....-.....+.++ +|+++|.|- ...++....+|..+.-
T Consensus 169 ~~~~DlllviGTSl~v~p~~~l~~~~~-~~~~~i~iN-~~~~~~~~~~~~~~~~ 220 (225)
T cd01411 169 IEKADLLVIVGTSFVVYPFAGLIDYRQ-AGANLIAIN-KEPTQLDSPATLVIKD 220 (225)
T ss_pred HhcCCEEEEECcCCeehhHHHHHHHHh-CCCeEEEEC-CCCCCCCcchhehhcc
Confidence 455689888888888877777777765 789987665 5578888888876543
No 277
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=24.79 E-value=4.3e+02 Score=26.93 Aligned_cols=37 Identities=35% Similarity=0.331 Sum_probs=26.3
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 322 ALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 322 ~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
.+...+++|+++|+|.... ++.++.+|..+.+.++.|
T Consensus 183 ~~~~a~~~G~kliviDPr~-t~ta~~AD~~l~irPGtD 219 (539)
T cd02762 183 RLKAAKDRGGSLVVIDPRR-TETAKLADEHLFVRPGTD 219 (539)
T ss_pred HHHHHHhCCCEEEEECCCC-chhhHhcCEeeCcCCCcH
Confidence 3455677888888776654 456677899888877655
No 278
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=24.76 E-value=4.2e+02 Score=28.84 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=21.0
Q ss_pred HcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 328 ARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 328 ~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
++|+++|+|.... ++.++.+|..+.+-++.|
T Consensus 235 ~~GakliviDPr~-t~ta~~Ad~~l~irPGTD 265 (830)
T TIGR01706 235 HPKVKVVVLSTFT-HRSFDLADIGIIFKPQTD 265 (830)
T ss_pred cCCCEEEEECCCC-CchhHHhCeeeccCCCCH
Confidence 3688888776543 455567888887766654
No 279
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=24.60 E-value=66 Score=29.91 Aligned_cols=33 Identities=15% Similarity=0.028 Sum_probs=27.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCC
Q psy1915 134 CFFISQSGETADSLMALRYCKARGALIVGVTNTV 167 (361)
Q Consensus 134 vI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~ 167 (361)
+++-|.||+|+-+.++++.++++| ++..|=..+
T Consensus 6 i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~ 38 (274)
T PRK14493 6 IVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMD 38 (274)
T ss_pred EECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcC
Confidence 556689999999999999999999 766665544
No 280
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=24.45 E-value=1.3e+02 Score=28.07 Aligned_cols=53 Identities=9% Similarity=-0.001 Sum_probs=39.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEc
Q psy1915 128 VFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHI 181 (361)
Q Consensus 128 ~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~ 181 (361)
+.+.|++|++-.|....-.....+.++++|+++| +-|...++....+|+.|.-
T Consensus 212 ~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i-~IN~~~t~~~~~~~~~i~g 264 (285)
T PRK05333 212 LDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIA-ALNLGRTRADPLLTLKVEA 264 (285)
T ss_pred HhcCCEEEEECcCceecchhhhHHHHHHCCCeEE-EECCCCCCCCcceeEEEeC
Confidence 4567999998888887766677888999999555 4556678887777665543
No 281
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=24.45 E-value=1.5e+02 Score=29.87 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=33.6
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEEcCCCCc--cccccCeeEEccc
Q psy1915 141 GETADSLMALRYCKARGALIVGVTNTVGSS--ISRESHCGIHINA 183 (361)
Q Consensus 141 G~t~e~~~a~~~ak~~g~~~i~IT~~~~S~--la~~ad~~l~~~~ 183 (361)
|...--+.+++.+++.|..++++.++++.+ -.++||..+.++.
T Consensus 9 ~~geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~ 53 (472)
T PRK07178 9 NRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGA 53 (472)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCC
Confidence 444557789999999999999999988764 4556998777653
No 282
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=24.34 E-value=87 Score=28.31 Aligned_cols=28 Identities=11% Similarity=0.017 Sum_probs=24.3
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEEcCCCC
Q psy1915 142 ETADSLMALRYCKARGALIVGVTNTVGS 169 (361)
Q Consensus 142 ~t~e~~~a~~~ak~~g~~~i~IT~~~~S 169 (361)
--+.++++++.++++|.+++-+|+++..
T Consensus 121 aip~al~l~~~l~~~G~~Vf~lTGR~e~ 148 (229)
T TIGR01675 121 ALPEGLKLYQKIIELGIKIFLLSGRWEE 148 (229)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCChH
Confidence 3578999999999999999999998653
No 283
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=24.29 E-value=1.1e+02 Score=27.13 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccC
Q psy1915 143 TADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAG 184 (361)
Q Consensus 143 t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~ 184 (361)
...+.+.++..++.|.++|.+|.+....+.+.||.++.+..|
T Consensus 179 ~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G 220 (226)
T cd03234 179 ALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSG 220 (226)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCC
Confidence 456777777776667777777765445789999998888654
No 284
>PF10432 bact-PGI_C: Bacterial phospho-glucose isomerase C-terminal region; InterPro: IPR019490 Phosphoglucose isomerase (PGI) catalyses the interconversion of phosphoglucose and phosphofructose, and is a component of many sugar metabolic pathways. In some archaea and bacteria PGI activity occurs via a bifunctional enzyme that also exhibits phosphomannose isomerase (PMI) activity. Though not closely related to eukaryotic PGIs, the bifunctional enzyme is similar enough that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This entry represents the C-terminal half of the bifunctional PGI/PMI enzyme, which contains many of the active catalytic site residues. The enzyme is thought to use the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity; PDB: 1TZB_A 1X9H_A 1TZC_B 1X9I_A 1WIW_A.
Probab=24.07 E-value=2.1e+02 Score=24.00 Aligned_cols=92 Identities=15% Similarity=0.217 Sum_probs=50.3
Q ss_pred CcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEeccccccc-----CC--CCCCCCEEEEEcCCCCcHHHHH
Q psy1915 76 SPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFLDR-----NT--PVFRDDVCFFISQSGETADSLM 148 (361)
Q Consensus 76 ~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~~~-----~~--~~~~~dlvI~iS~SG~t~e~~~ 148 (361)
-+++.|.+....+|... +.-+.+-.+.++.+..-.|..+. .. ......-+|.+.-+...+.+..
T Consensus 19 ~Pvi~~~~~~~~vA~R~---------k~qlnEnAK~~A~~~~lPE~~Hn~i~g~~~~~~~~~~~~~v~l~d~~~~~~~~~ 89 (155)
T PF10432_consen 19 IPVIYGSPLYAAVARRW---------KQQLNENAKYPAFAAVLPEANHNEIVGWEGPEPPGGRLRVVLLRDPEDHPRVQR 89 (155)
T ss_dssp EEEEEECGCGCHHHHHH---------HHHHHHTT----EEEEETCHHHCHHHCTSS-GGGGTTEEEEEEC-TCCHHHHHH
T ss_pred CcEEEECccchHHHHHH---------HHHHHHHhCCccchhcchhhhhhhhhhccCCcccccceEEEEEEcCCccccchh
Confidence 35677774444444221 34445557888887765554321 11 1234556777777777777755
Q ss_pred HHHHH----HHcCCeEEEEEcCCCCccccccC
Q psy1915 149 ALRYC----KARGALIVGVTNTVGSSISRESH 176 (361)
Q Consensus 149 a~~~a----k~~g~~~i~IT~~~~S~la~~ad 176 (361)
-++.. +++|+.++-|....+|+|.++..
T Consensus 90 r~~~~~e~~~~~~~~v~~v~~~g~s~l~rl~~ 121 (155)
T PF10432_consen 90 RVEITREIAEDRGVRVIEVEAEGGSPLERLAS 121 (155)
T ss_dssp HHHHHHHHHTTCSSEEEEE--SCCCHHHHHHH
T ss_pred hhHHHHHHHHhcCCcEEEEecCCCCHHHHHHH
Confidence 55444 45689999999888888877653
No 285
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=23.94 E-value=1.4e+02 Score=24.08 Aligned_cols=27 Identities=7% Similarity=0.063 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCeEEEEEcCCCCc
Q psy1915 144 ADSLMALRYCKARGALIVGVTNTVGSS 170 (361)
Q Consensus 144 ~e~~~a~~~ak~~g~~~i~IT~~~~S~ 170 (361)
..+.+..+.+++.++++|.++......
T Consensus 114 ~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 114 EELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 445556667777899999999876554
No 286
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.92 E-value=1.7e+02 Score=29.56 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=11.1
Q ss_pred CCcEEEEeccccc
Q psy1915 75 GSPLLVGIKTKTR 87 (361)
Q Consensus 75 g~i~~~G~G~S~~ 87 (361)
.+++++|+|.||.
T Consensus 8 ~~i~v~G~G~sG~ 20 (498)
T PRK02006 8 PMVLVLGLGESGL 20 (498)
T ss_pred CEEEEEeecHhHH
Confidence 4689999999985
No 287
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=23.82 E-value=7.6e+02 Score=24.86 Aligned_cols=108 Identities=14% Similarity=0.070 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhhhhccCccceeeeccCCcEEEEeccccccccccchhhhhHHHHHHHHHhcCCceEEEeccccccc---
Q psy1915 48 HIAIMEGAFALCFKSKLFPGECVATRRGSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVELASDFLDR--- 124 (361)
Q Consensus 48 ~~~~l~~~~~~~~~~~~~~~~~~~~~~g~i~~~G~G~S~~~a~~~~~~~~~~~a~~~~~~~~g~~~~~~~~~e~~~~--- 124 (361)
--+.|.++...++... +|+ -++++|-..++.++-|.- ++..-+++..|+|+....++-|...
T Consensus 81 ~~~~L~~~i~ei~~~~-~p~--------~ifv~~TC~t~iIGdDle------~va~~~~~~~gipVV~v~~~Gf~~~~tq 145 (457)
T CHL00073 81 DYEELKRLCLQIKKDR-NPS--------VIVWIGTCTTEIIKMDLE------GMAPKLEAEIGIPIVVARANGLDYAFTQ 145 (457)
T ss_pred CHHHHHHHHHHHHHhC-CCC--------EEEEEccCcHHhhccCHH------HHHHHHHHhhCCCEEEEeCCCccCcCCc
Confidence 3445555555555433 342 456677788888886654 2233344456999888765444210
Q ss_pred -------------CC-C----------------------------CCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEE
Q psy1915 125 -------------NT-P----------------------------VFRDDVCFFISQSGETADSLMALRYCKARGALIVG 162 (361)
Q Consensus 125 -------------~~-~----------------------------~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~ 162 (361)
.. . ..++++.+.-|.. ..+..+.-+..++.|+.+.+
T Consensus 146 g~d~~Laa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~G~~~--~~~~~~i~~lL~~lGI~v~~ 223 (457)
T CHL00073 146 GEDTVLAAMAHRCPEQEVSTSESKETKQKTQSSLFSNKEKSLVKYKTHPPLVLFGSLP--STVASQLTLELKRQGIKVSG 223 (457)
T ss_pred chhHHHHHhHHhhhhhhcCccccccccccccccccccccccccccCCCCcEEEEEecC--cccHHHHHHHHHHcCCeEeE
Confidence 00 0 0234677777776 44567777888999999986
Q ss_pred EEcCCCCccccc
Q psy1915 163 VTNTVGSSISRE 174 (361)
Q Consensus 163 IT~~~~S~la~~ 174 (361)
... ++...++
T Consensus 224 ~lp--~~~~~eL 233 (457)
T CHL00073 224 WLP--SQRYTDL 233 (457)
T ss_pred EeC--CCCHHHH
Confidence 554 4444443
No 288
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=23.70 E-value=95 Score=26.09 Aligned_cols=42 Identities=19% Similarity=0.073 Sum_probs=28.9
Q ss_pred CceEEEecccc--cccCCCCCCCCEEEEEcCCCCcHHHHHHHHH
Q psy1915 111 LPVMVELASDF--LDRNTPVFRDDVCFFISQSGETADSLMALRY 152 (361)
Q Consensus 111 ~~~~~~~~~e~--~~~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ 152 (361)
.++....+.+. .+.+..+..+++.|+||.+|.++-.-..++.
T Consensus 95 ~~vn~~d~~~~~~f~~pa~v~~~~l~iaisT~G~sP~la~~lr~ 138 (157)
T PRK06719 95 QWVNVVSDGTESSFHTPGVIRNDEYVVTISTSGKDPSFTKRLKQ 138 (157)
T ss_pred CcEEECCCCCcCcEEeeeEEEECCeEEEEECCCcChHHHHHHHH
Confidence 35554433331 1235667889999999999999988777664
No 289
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=23.70 E-value=1e+02 Score=25.03 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=22.7
Q ss_pred CEEEEEcCCCCcHHHHHHHH-HHHHcCCeE
Q psy1915 132 DVCFFISQSGETADSLMALR-YCKARGALI 160 (361)
Q Consensus 132 dlvI~iS~SG~t~e~~~a~~-~ak~~g~~~ 160 (361)
-++|-.|++|+|+.+.+.+. .++..|..+
T Consensus 3 i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v 32 (140)
T TIGR01754 3 ILLAYLSLSGNTEEVAFMIQDYLQKDGHEV 32 (140)
T ss_pred EEEEEECCCChHHHHHHHHHHHHhhCCeeE
Confidence 46888999999999999874 555666654
No 290
>PF05372 Delta_lysin: Delta lysin family; InterPro: IPR008034 Delta-lysin is a 26 amino acid, hemolytic peptide toxin secreted by Staphylococcus aureus. It is thought that delta-toxin forms an amphipathic helix upon binding to lipid bilayers []. The precise mode of action of delta-lysis is unclear.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region; PDB: 2KAM_A 2DTB_A 1DTC_A.
Probab=23.43 E-value=50 Score=18.36 Aligned_cols=9 Identities=44% Similarity=0.250 Sum_probs=4.7
Q ss_pred HHHHHHHHH
Q psy1915 16 IIELLIKGL 24 (361)
Q Consensus 16 ~~~~~~~~~ 24 (361)
|+|||-||.
T Consensus 16 I~~TV~KF~ 24 (25)
T PF05372_consen 16 IIETVKKFT 24 (25)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 455555553
No 291
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=23.10 E-value=94 Score=29.59 Aligned_cols=32 Identities=31% Similarity=0.171 Sum_probs=25.6
Q ss_pred EEEEcCCCCcH---HHHHHHHHHHHcCCeEEEEEc
Q psy1915 134 CFFISQSGETA---DSLMALRYCKARGALIVGVTN 165 (361)
Q Consensus 134 vI~iS~SG~t~---e~~~a~~~ak~~g~~~i~IT~ 165 (361)
-++||.+|+.. ++.++++.++++|..+...||
T Consensus 132 ~v~iSl~GEPlL~p~l~eli~~~k~~Gi~~~L~TN 166 (322)
T PRK13762 132 HVAISLSGEPTLYPYLPELIEEFHKRGFTTFLVTN 166 (322)
T ss_pred EEEEeCCccccchhhHHHHHHHHHHcCCCEEEECC
Confidence 46677779874 688999999999997766666
No 292
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=23.02 E-value=96 Score=28.08 Aligned_cols=34 Identities=15% Similarity=0.074 Sum_probs=28.4
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEEcCCCCcccccc
Q psy1915 142 ETADSLMALRYCKARGALIVGVTNTVGSSISRES 175 (361)
Q Consensus 142 ~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~a 175 (361)
-++.+.++++.++++|.+++..|+++-..+.++.
T Consensus 21 i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~ 54 (264)
T COG0561 21 ISPETKEALARLREKGVKVVLATGRPLPDVLSIL 54 (264)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHH
Confidence 5789999999999999999999998776655443
No 293
>PTZ00293 thymidine kinase; Provisional
Probab=22.94 E-value=1.1e+02 Score=27.25 Aligned_cols=38 Identities=13% Similarity=0.032 Sum_probs=32.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCc
Q psy1915 133 VCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSS 170 (361)
Q Consensus 133 lvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~ 170 (361)
+..+-=.||+|.++++.+...+.+|-+++.+....++.
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~DtR 45 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKDTR 45 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHHcCCceEEEEeccccc
Confidence 44455589999999999999999999999999876664
No 294
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=22.92 E-value=1.2e+02 Score=26.55 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=25.7
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEEcCCCCccc
Q psy1915 142 ETADSLMALRYCKARGALIVGVTNTVGSSIS 172 (361)
Q Consensus 142 ~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la 172 (361)
.++.+.++++.++++|.+++..|+++...+.
T Consensus 17 ~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~ 47 (221)
T TIGR02463 17 DWQPAAPWLTRLQEAGIPVILCTSKTAAEVE 47 (221)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEcCCCHHHHH
Confidence 4566889999999999999999998776643
No 295
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=22.50 E-value=5.7e+02 Score=25.95 Aligned_cols=36 Identities=31% Similarity=0.341 Sum_probs=20.8
Q ss_pred cCCceEEE--ec-ccccccCCCCCCCCEEEEEcCCCCcHHH
Q psy1915 109 TELPVMVE--LA-SDFLDRNTPVFRDDVCFFISQSGETADS 146 (361)
Q Consensus 109 ~g~~~~~~--~~-~e~~~~~~~~~~~dlvI~iS~SG~t~e~ 146 (361)
++.|+.+. .+ .|-.....-..|+|++ .|++|.|-|+
T Consensus 294 lkl~vnV~~v~~l~ENm~~~~A~rPgDVi--~~~~GkTVEV 332 (483)
T PRK00913 294 LKLPVNVVGVVAACENMPSGNAYRPGDVL--TSMSGKTIEV 332 (483)
T ss_pred cCCCceEEEEEEeeccCCCCCCCCCCCEE--EECCCcEEEe
Confidence 45555443 22 3322334567889987 6788877665
No 296
>PRK12359 flavodoxin FldB; Provisional
Probab=22.28 E-value=1.6e+02 Score=25.29 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEc
Q psy1915 133 VCFFISQSGETADSLMALRYCKARGALIVGVTN 165 (361)
Q Consensus 133 lvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~ 165 (361)
.+|-.|.+|+|+.+.+.+... .|...+-+.+
T Consensus 4 ~I~Y~S~TGNTe~vAe~I~~~--lg~~~v~v~~ 34 (172)
T PRK12359 4 GLFYGSSTCYTEMAAEKIRDI--IGEELVDLHN 34 (172)
T ss_pred EEEEECCCCHHHHHHHHHHHH--hCCCeEEEEE
Confidence 578899999999999888643 3544333333
No 297
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=22.07 E-value=1.6e+02 Score=29.35 Aligned_cols=14 Identities=21% Similarity=0.026 Sum_probs=11.7
Q ss_pred CCcEEEEecccccc
Q psy1915 75 GSPLLVGIKTKTRL 88 (361)
Q Consensus 75 g~i~~~G~G~S~~~ 88 (361)
.+++++|.|.||.-
T Consensus 8 ~~v~viG~G~sG~s 21 (461)
T PRK00421 8 KRIHFVGIGGIGMS 21 (461)
T ss_pred CEEEEEEEchhhHH
Confidence 46899999999864
No 298
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=22.03 E-value=2.1e+02 Score=20.04 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=27.9
Q ss_pred HHHhhCcceEEEecCCccccCccCcc-CCCcEEEEEcCCccHH-HHHHHHHHHHHcCCcEEEE
Q psy1915 276 IKELTYMHSEGIMAGELKHGPLALID-NSMPVIMILTRDPVYV-KCMNALLQVIARDGRPIVI 336 (361)
Q Consensus 276 l~E~~~~~a~~~~~~E~~Hgp~~~i~-~~~~vi~i~~~g~~~~-~~~~~~~~~~~~g~~~v~I 336 (361)
+.|-.++........ ...++ ++..++++.+.....+ ...+.+.+..++|+++|++
T Consensus 13 ~L~~~g~~v~~~~~~------~~~l~~~~~tll~i~~~~~~~~~~~~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 13 LLEEQGVKVERWRKP------YEALEADDGTLLVIGPDLRLSEPEEAEALLEWVEAGNTLVLA 69 (70)
T ss_pred HHHHCCCeeEEeccc------HHHhCCCCCEEEEEeCCCCCCchHHHHHHHHHHHcCCEEEEe
Confidence 555556555543332 22222 4555666666534332 3444555555688887654
No 299
>PRK10637 cysG siroheme synthase; Provisional
Probab=21.93 E-value=92 Score=31.22 Aligned_cols=44 Identities=16% Similarity=0.024 Sum_probs=32.3
Q ss_pred cCCceEEEecccc--cccCCCCCCCCEEEEEcCCCCcHHHHHHHHH
Q psy1915 109 TELPVMVELASDF--LDRNTPVFRDDVCFFISQSGETADSLMALRY 152 (361)
Q Consensus 109 ~g~~~~~~~~~e~--~~~~~~~~~~dlvI~iS~SG~t~e~~~a~~~ 152 (361)
.|+.+++.+..+. .+.+..+..+++.|+||.+|.++-+-..++.
T Consensus 96 ~~~lvN~~d~~~~~~f~~pa~~~~g~l~iaisT~G~sP~~a~~lr~ 141 (457)
T PRK10637 96 RRIFCNVVDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLARLLRE 141 (457)
T ss_pred cCcEEEECCCcccCeEEEeeEEecCCEEEEEECCCCCcHHHHHHHH
Confidence 5777777654332 1345667889999999999999988766654
No 300
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=21.77 E-value=1.2e+02 Score=28.32 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCC
Q psy1915 315 VYVKCMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPH 356 (361)
Q Consensus 315 ~~~~~~~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~ 356 (361)
.+.++.+.++.+++.|+.+|.++++--.++...||.++.+-.
T Consensus 171 ~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~ 212 (293)
T COG1131 171 SRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILND 212 (293)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeC
Confidence 455677888888888878898988887778888998876654
No 301
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=21.76 E-value=7.6e+02 Score=24.72 Aligned_cols=36 Identities=8% Similarity=0.187 Sum_probs=24.1
Q ss_pred CCCCCCEEEEEcCC------C--CcHHHHHHHHHHHHcCCeEEE
Q psy1915 127 PVFRDDVCFFISQS------G--ETADSLMALRYCKARGALIVG 162 (361)
Q Consensus 127 ~~~~~dlvI~iS~S------G--~t~e~~~a~~~ak~~g~~~i~ 162 (361)
.+++++-+|.+.+. | +..++-+..+.||++|+.++.
T Consensus 207 aI~~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~viv 250 (454)
T TIGR00474 207 AITENTALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVME 250 (454)
T ss_pred hcCcCCEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEE
Confidence 45566555444443 3 345788889999999988764
No 302
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=21.64 E-value=2.1e+02 Score=29.83 Aligned_cols=38 Identities=24% Similarity=0.201 Sum_probs=26.1
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhh-hcccceEEcCCCCC
Q psy1915 321 NALLQVIARDGRPIVICEKGDTETQ-ALATKTLEVPHTVD 359 (361)
Q Consensus 321 ~~~~~~~~~g~~~v~I~~~~~~~~~-~~~d~~i~~p~~~~ 359 (361)
..+.+.+++|+++|+|..... +.+ ..+|..|.+.+..|
T Consensus 189 ~~~~~a~~~G~klivIDPr~t-~tA~~~AD~~i~irPGTD 227 (617)
T cd02770 189 YYYLQAKKAGAKFIVIDPRYT-DTAVTLADEWIPIRPGTD 227 (617)
T ss_pred HHHHHHHHcCCeEEEECCCCC-ccccccCCEEECCCCCcH
Confidence 345567778999888876653 444 36898887766554
No 303
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=21.61 E-value=1.6e+02 Score=27.46 Aligned_cols=49 Identities=12% Similarity=0.098 Sum_probs=31.1
Q ss_pred CchhhhHHHHHHHHHHhhhccCCCCCC-C-CcccchhHHHHHHHHHHHHHH
Q psy1915 9 TPKTRLEIIELLIKGLKRLEYRGYDSS-G-NNELEGDHLARHIAIMEGAFA 57 (361)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-~-~~~~~~d~i~~~~~~l~~~~~ 57 (361)
.|..|+..++.+++++++-||.|.+-- + ......+.+...++.|..++.
T Consensus 85 ~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~~d~~~~~~fl~eL~~~l~ 135 (298)
T cd06549 85 DPSARAKFIANIAAYLERNQADGIVLDFEELPADDLPKYVAFLSELRRRLP 135 (298)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCEEEecCCCChhHHHHHHHHHHHHHHHhh
Confidence 467789999999999999999883321 1 111122355556666655543
No 304
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.31 E-value=1.5e+02 Score=22.45 Aligned_cols=41 Identities=10% Similarity=0.090 Sum_probs=34.5
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcC
Q psy1915 126 TPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNT 166 (361)
Q Consensus 126 ~~~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~ 166 (361)
..+.+-|+||++..-=.-..+..+-+.||+.|.|++-.-+.
T Consensus 44 ~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~ 84 (97)
T PF10087_consen 44 SKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSR 84 (97)
T ss_pred HhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCC
Confidence 45677899999999888888999999999999998866543
No 305
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=21.17 E-value=1.3e+02 Score=24.39 Aligned_cols=30 Identities=23% Similarity=0.090 Sum_probs=25.3
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEEcCCCCc
Q psy1915 141 GETADSLMALRYCKARGALIVGVTNTVGSS 170 (361)
Q Consensus 141 G~t~e~~~a~~~ak~~g~~~i~IT~~~~S~ 170 (361)
--.++++++++.++++|..++.+|+++...
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~ 53 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRT 53 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence 356899999999999999999999986543
No 306
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.15 E-value=2.5e+02 Score=27.91 Aligned_cols=13 Identities=23% Similarity=0.230 Sum_probs=11.3
Q ss_pred CCcEEEEeccccc
Q psy1915 75 GSPLLVGIKTKTR 87 (361)
Q Consensus 75 g~i~~~G~G~S~~ 87 (361)
.+++++|.|.||.
T Consensus 15 ~~i~v~G~G~sG~ 27 (458)
T PRK01710 15 KKVAVVGIGVSNI 27 (458)
T ss_pred CeEEEEcccHHHH
Confidence 4789999999986
No 307
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=21.14 E-value=87 Score=28.72 Aligned_cols=52 Identities=15% Similarity=0.108 Sum_probs=41.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEE
Q psy1915 128 VFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIH 180 (361)
Q Consensus 128 ~~~~dlvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~ 180 (361)
+...|++|++-.||...-.-.....++++|+.+|.|-. ..+++...+|..+.
T Consensus 180 ~~~~d~liviGTSl~V~Paa~~p~~~~~~g~~~i~iN~-~~~~~~~~~d~~i~ 231 (250)
T COG0846 180 LKEADLLIVIGTSLKVYPAAGLPELAKRRGAKVIEINL-EPTRLDPIADEVIR 231 (250)
T ss_pred hccCCEEEEECcceEEcChhhhhHHHHhcCCEEEEECC-CcccCcchhHHHHH
Confidence 46789999999999999999966669999999887754 56777777776553
No 308
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=21.11 E-value=67 Score=28.92 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCeEEEEEcCCCC
Q psy1915 145 DSLMALRYCKARGALIVGVTNTVGS 169 (361)
Q Consensus 145 e~~~a~~~ak~~g~~~i~IT~~~~S 169 (361)
.+++.++.++++|.+++-||+++.+
T Consensus 119 ~a~~l~~~~~~~G~~V~~iT~R~~~ 143 (229)
T PF03767_consen 119 GALELYNYARSRGVKVFFITGRPES 143 (229)
T ss_dssp THHHHHHHHHHTTEEEEEEEEEETT
T ss_pred HHHHHHHHHHHCCCeEEEEecCCch
Confidence 3789999999999999999999866
No 309
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=20.99 E-value=4.7e+02 Score=27.21 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=56.4
Q ss_pred HHHHHHHHHh----cCCeEEE----EeccCCHHHHHHHH-HHHHHhhCc--------------ceEEEecCCccccC---
Q psy1915 243 EVQQLAKEMY----EQKSMLL----MGRGYNYATCMEGA-LKIKELTYM--------------HSEGIMAGELKHGP--- 296 (361)
Q Consensus 243 ~~~~~a~~l~----~~~~i~~----iG~G~~~~~A~e~a-lkl~E~~~~--------------~a~~~~~~E~~Hgp--- 296 (361)
.+.+.|++++ +.+++.+ =+-|...++|.|-| +-|-|-... .+-.|+.++..---
T Consensus 328 ~m~~vAk~irrAV~egRPIiiRHHaDaDG~~agvAlE~AilplI~~~~~d~DAeyh~~KRrPskAPfYeleDvtrDl~~a 407 (715)
T COG1107 328 DMVDVAKEIRRAVLEGRPIIIRHHADADGYCAGVALEKAILPLIEDVHPDEDAEYHLFKRRPSKAPFYELEDVTRDLNFA 407 (715)
T ss_pred HHHHHHHHHHHHHhcCCceEEecccCcccccchhhHHHHHHHHHHHhCCChhhhhHHhhcCcccCCceeHHhhhhhHHHH
Confidence 3444455544 3444433 37889999999854 444443221 12233333321100
Q ss_pred ---ccCccCCCcEEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecC
Q psy1915 297 ---LALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEK 339 (361)
Q Consensus 297 ---~~~i~~~~~vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~ 339 (361)
....+...|.+++...|.|. +...+++.++.+|..+|+|-..
T Consensus 408 LED~~RhGqKlPL~VlvDnGsTe-EDipA~~~~k~Ygi~ivVVDHH 452 (715)
T COG1107 408 LEDAHRHGQKLPLLVLVDNGSTE-EDIPAIKQLKAYGIDIVVVDHH 452 (715)
T ss_pred HHHHHhcCCccceEEEEcCCCcc-cccHHHHHHHhcCCCEEEEcCC
Confidence 01112567888888888875 5667899999999999988653
No 310
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=20.96 E-value=1.1e+02 Score=27.63 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=27.2
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEEcCCCCcccc
Q psy1915 142 ETADSLMALRYCKARGALIVGVTNTVGSSISR 173 (361)
Q Consensus 142 ~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~ 173 (361)
=++++.++++.++++|.+++..|+++-..+..
T Consensus 21 i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~ 52 (270)
T PRK10513 21 ISPAVKQAIAAARAKGVNVVLTTGRPYAGVHR 52 (270)
T ss_pred cCHHHHHHHHHHHHCCCEEEEecCCChHHHHH
Confidence 47889999999999999999999998776443
No 311
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=20.91 E-value=2.5e+02 Score=20.93 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=26.1
Q ss_pred CCCCcHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCee
Q psy1915 139 QSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCG 178 (361)
Q Consensus 139 ~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~ 178 (361)
+.=...++.++++.+++.+.++++|.-|-..-....|...
T Consensus 35 q~la~~dv~r~~~~~~~~~vpilGvVENMs~~~Cp~Cg~~ 74 (81)
T PF10609_consen 35 QELALADVRRAIDMFRKLNVPILGVVENMSYFVCPHCGER 74 (81)
T ss_dssp CC--HHHHHHHHHHHHCTT-EEEEEEECT-EEE-TTT--E
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCCccCCCCCCCe
Confidence 3334678899999999999999999988655555444433
No 312
>KOG4039|consensus
Probab=20.82 E-value=1.2e+02 Score=26.60 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCeEEEEEcCCC
Q psy1915 144 ADSLMALRYCKARGALIVGVTNTVG 168 (361)
Q Consensus 144 ~e~~~a~~~ak~~g~~~i~IT~~~~ 168 (361)
..++.+++.||++||+++.+.+..+
T Consensus 109 Dyvl~~A~~AKe~Gck~fvLvSS~G 133 (238)
T KOG4039|consen 109 DYVLQLAQAAKEKGCKTFVLVSSAG 133 (238)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeccC
Confidence 4789999999999999998887543
No 313
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.79 E-value=3.9e+02 Score=26.40 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=12.3
Q ss_pred cCCcEEEEecccccc
Q psy1915 74 RGSPLLVGIKTKTRL 88 (361)
Q Consensus 74 ~g~i~~~G~G~S~~~ 88 (361)
.|.++++|+|.||..
T Consensus 6 ~~~~~v~G~G~sG~s 20 (448)
T PRK03803 6 DGLHIVVGLGKTGLS 20 (448)
T ss_pred CCeEEEEeecHhHHH
Confidence 478899999999853
No 314
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=20.72 E-value=1.1e+02 Score=24.75 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=16.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcCCeE--EEEE
Q psy1915 134 CFFISQSGETADSLMALRYCKARGALI--VGVT 164 (361)
Q Consensus 134 vI~iS~SG~t~e~~~a~~~ak~~g~~~--i~IT 164 (361)
++..|.||+|+..+ ++.|.++ +-++
T Consensus 1 IvY~S~TGNte~fv------~~lg~~~~~i~~~ 27 (125)
T TIGR00333 1 IYFSSKTGNVQRFV------EKLGFQHIRIPVD 27 (125)
T ss_pred CEEEcccccHHHHH------HHcCCCcEEeecC
Confidence 35689999999993 3445554 4444
No 315
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=20.72 E-value=7.2e+02 Score=23.49 Aligned_cols=30 Identities=13% Similarity=0.038 Sum_probs=24.0
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEEcCCCCcc
Q psy1915 142 ETADSLMALRYCKARGALIVGVTNTVGSSI 171 (361)
Q Consensus 142 ~t~e~~~a~~~ak~~g~~~i~IT~~~~S~l 171 (361)
.++.+.++++.++++|+++|..|++.-..+
T Consensus 19 ~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev 48 (302)
T PRK12702 19 SYGAARQALAALERRSIPLVLYSLRTRAQL 48 (302)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCHHHH
Confidence 456788888889999999998888766554
No 316
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=20.70 E-value=2.8e+02 Score=23.23 Aligned_cols=51 Identities=8% Similarity=0.078 Sum_probs=0.0
Q ss_pred EEEEEcCCccHHHHHHHHHHHHHcCCcEEEEecCCCc-----hhhhcccceEEcCC
Q psy1915 306 VIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDT-----ETQALATKTLEVPH 356 (361)
Q Consensus 306 vi~i~~~g~~~~~~~~~~~~~~~~g~~~v~I~~~~~~-----~~~~~~d~~i~~p~ 356 (361)
++++.++|.+..+..+..+.+++.|..+++|.-.... .++...++++.++.
T Consensus 109 v~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~~~~~~eL~~ias~p~~vf~v~~ 164 (165)
T cd01481 109 FLVLITGGKSQDDVERPAVALKRAGIVPFAIGARNADLAELQQIAFDPSFVFQVSD 164 (165)
T ss_pred EEEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCCcCCHHHHHHHhCCCccEEEecC
No 317
>PRK14752 delta-hemolysin; Provisional
Probab=20.69 E-value=55 Score=20.47 Aligned_cols=11 Identities=36% Similarity=0.335 Sum_probs=7.3
Q ss_pred HHHHHHHHHhh
Q psy1915 16 IIELLIKGLKR 26 (361)
Q Consensus 16 ~~~~~~~~~~~ 26 (361)
||+||-||.||
T Consensus 34 ii~tv~kft~k 44 (44)
T PRK14752 34 IIDTVNKFTKK 44 (44)
T ss_pred HHHHHHHHccC
Confidence 66777777664
No 318
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=20.62 E-value=1.1e+02 Score=28.74 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcccCC
Q psy1915 143 TADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGP 185 (361)
Q Consensus 143 t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~~~ 185 (361)
-.++.+.++..++.|-.+|.||+..-..+..+||.++++..|.
T Consensus 172 ~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~ 214 (293)
T COG1131 172 RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGK 214 (293)
T ss_pred HHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCE
Confidence 4678888888888887888899888889999999888887664
No 319
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=20.42 E-value=7.6e+02 Score=23.62 Aligned_cols=22 Identities=9% Similarity=-0.132 Sum_probs=18.3
Q ss_pred HHHHHHHHHcCCcEEEEecCCC
Q psy1915 320 MNALLQVIARDGRPIVICEKGD 341 (361)
Q Consensus 320 ~~~~~~~~~~g~~~v~I~~~~~ 341 (361)
..+++|+.+.|.++|++.+...
T Consensus 165 ~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 165 DIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred hHHHHHHHHcCCCEEEEeeCCC
Confidence 3578899999999999998653
No 320
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=20.40 E-value=5.6e+02 Score=28.21 Aligned_cols=38 Identities=18% Similarity=0.069 Sum_probs=25.7
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhhcccceEEcCCCCC
Q psy1915 321 NALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVD 359 (361)
Q Consensus 321 ~~~~~~~~~g~~~v~I~~~~~~~~~~~~d~~i~~p~~~~ 359 (361)
..+.+++++|+++|+|.... ++.++.+|..+.+-++.|
T Consensus 244 ~~l~~a~~~GaklVvIdPr~-t~tA~~AD~wlpirPGTD 281 (912)
T TIGR03479 244 HFLSEARYNGARVVSIAPDY-NPSTIHADLWLPVRVGTD 281 (912)
T ss_pred HHHHHHHhcCCeEEEECCCC-ChhhhhCCeecCCCCCcH
Confidence 44556677888988886554 556677898876655443
No 321
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=20.38 E-value=1e+02 Score=26.47 Aligned_cols=33 Identities=18% Similarity=-0.042 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEEc
Q psy1915 133 VCFFISQSGETADSLMALRYCKARGALIVGVTN 165 (361)
Q Consensus 133 lvI~iS~SG~t~e~~~a~~~ak~~g~~~i~IT~ 165 (361)
.+++-|.||+|+-+..+++..+.+|.++-.|-.
T Consensus 10 ~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~ 42 (173)
T PRK10751 10 AIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (173)
T ss_pred EEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 466779999999999999999988987766653
No 322
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=20.28 E-value=69 Score=27.07 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=14.8
Q ss_pred CchhhhHHHHHHHHHHhhhccCC
Q psy1915 9 TPKTRLEIIELLIKGLKRLEYRG 31 (361)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~~ 31 (361)
..+|| +|-++.|+|||||+.
T Consensus 38 ~~~tR---veEiieFak~mgykk 57 (157)
T PF08901_consen 38 GKLTR---VEEIIEFAKRMGYKK 57 (157)
T ss_pred cccch---HHHHHHHHHHcCCCe
Confidence 34566 456789999999874
No 323
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=20.28 E-value=5e+02 Score=25.64 Aligned_cols=51 Identities=24% Similarity=0.200 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhc----CCeEEEEeccCCHHHHHHHHHHHHHhhCc---ceEEEecCCcccc
Q psy1915 242 SEVQQLAKEMYE----QKSMLLMGRGYNYATCMEGALKIKELTYM---HSEGIMAGELKHG 295 (361)
Q Consensus 242 ~~~~~~a~~l~~----~~~i~~iG~G~~~~~A~e~alkl~E~~~~---~a~~~~~~E~~Hg 295 (361)
++..++|+.+.+ .+++||.-+ -+-|.|+|+|+-+.... ...-+....-+||
T Consensus 84 ~~~~~la~~L~~~s~~~d~vff~NS---GaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHG 141 (404)
T COG4992 84 EPQAELAEKLVELSPFADRVFFCNS---GAEANEAALKLARKYTGDPEKSKIIAFENSFHG 141 (404)
T ss_pred hHHHHHHHHHHhhCccccEEEEcCC---cHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCC
Confidence 344445555443 566777444 46789999999998765 3355555666675
No 324
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=20.26 E-value=7.7e+02 Score=23.65 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=30.4
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEE----EEcCCCCccccccCeeEEc
Q psy1915 140 SGETADSLMALRYCKARGALIVG----VTNTVGSSISRESHCGIHI 181 (361)
Q Consensus 140 SG~t~e~~~a~~~ak~~g~~~i~----IT~~~~S~la~~ad~~l~~ 181 (361)
.|...++-+..+.|+++|+.+|. .+.....|+...+|+++..
T Consensus 149 tg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~~pl~~gaDivv~S 194 (364)
T PRK07269 149 LMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIELGADIVLHS 194 (364)
T ss_pred CCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEec
Confidence 46667888889999999988773 2333456777778987754
No 325
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=20.19 E-value=1.2e+02 Score=27.38 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=26.7
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEEcCCCCccc
Q psy1915 142 ETADSLMALRYCKARGALIVGVTNTVGSSIS 172 (361)
Q Consensus 142 ~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la 172 (361)
-++++.++++.++++|.+++..|+++-..+.
T Consensus 21 i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~ 51 (272)
T PRK10530 21 ILPESLEALARAREAGYKVIIVTGRHHVAIH 51 (272)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCChHHHH
Confidence 4788999999999999999999999766543
No 326
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=20.08 E-value=1.3e+02 Score=26.45 Aligned_cols=32 Identities=16% Similarity=0.099 Sum_probs=27.4
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEEcCCCCcccc
Q psy1915 142 ETADSLMALRYCKARGALIVGVTNTVGSSISR 173 (361)
Q Consensus 142 ~t~e~~~a~~~ak~~g~~~i~IT~~~~S~la~ 173 (361)
-++++.++++.++++|.+++..|+++-..+.+
T Consensus 21 i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~ 52 (230)
T PRK01158 21 LSLKAVEAIRKAEKLGIPVILATGNVLCFARA 52 (230)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHH
Confidence 47899999999999999999999998766544
No 327
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=20.07 E-value=2.1e+02 Score=28.85 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=33.5
Q ss_pred EcCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCC--ccccccCeeEEccc
Q psy1915 137 ISQSGETADSLMALRYCKARGALIVGVTNTVGS--SISRESHCGIHINA 183 (361)
Q Consensus 137 iS~SG~t~e~~~a~~~ak~~g~~~i~IT~~~~S--~la~~ad~~l~~~~ 183 (361)
|-.+|+ --+.+++.||+.|..+|++.++++. +-.++||..+.++.
T Consensus 7 i~~~ge--~a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~AD~~~~i~~ 53 (478)
T PRK08463 7 IANRGE--IAVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGT 53 (478)
T ss_pred EECCCH--HHHHHHHHHHHcCCeEEEEECCCccCCcchhhcCEEEEcCC
Confidence 334444 4688899999999999999986644 55578998877653
Done!