RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1915
(361 letters)
>gnl|CDD|215531 PLN02981, PLN02981, glucosamine:fructose-6-phosphate
aminotransferase.
Length = 680
Score = 376 bits (968), Expect = e-126
Identities = 148/264 (56%), Positives = 199/264 (75%), Gaps = 2/264 (0%)
Query: 100 ATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGAL 159
A R +LEEL+ +PV +ELASD LDR P++R+D F+SQSGETAD+L AL Y K GAL
Sbjct: 380 AARPILEELSGVPVTMELASDLLDRQGPIYREDTAVFVSQSGETADTLRALEYAKENGAL 439
Query: 160 IVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTR 219
VG+TNTVGS+ISR +HCG+HINAG EIGVASTKAYTSQ +++ M AL + ED IS ++R
Sbjct: 440 CVGITNTVGSAISRGTHCGVHINAGAEIGVASTKAYTSQIVAMTMLALALGEDSISSRSR 499
Query: 220 RNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKEL 279
R II GL + ++REVL++D E+++LA+ + +++S+L+ GRGYNYAT +EGALK+KE+
Sbjct: 500 REAIIDGLFDLPNKVREVLKLDQEMKELAELLIDEQSLLVFGRGYNYATALEGALKVKEV 559
Query: 280 TYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEK 339
MHSEGI+AGE+KHGPLAL+D ++P+I+I TRD + K + + Q+ AR GR IVIC K
Sbjct: 560 ALMHSEGILAGEMKHGPLALVDETLPIIVIATRDACFSKQQSVIQQLRARKGRLIVICSK 619
Query: 340 GDTE--TQALATKTLEVPHTVDCL 361
GD + + +EVP DCL
Sbjct: 620 GDASSVCPSGGCRVIEVPQVEDCL 643
Score = 60.1 bits (146), Expect = 6e-10
Identities = 24/36 (66%), Positives = 29/36 (80%)
Query: 1 IFAYLNYLTPKTRLEIIELLIKGLKRLEYRGYDSSG 36
IFAYLNY P+ R I+E+L GL+RLEYRGYDS+G
Sbjct: 4 IFAYLNYNVPRERRFILEVLFNGLRRLEYRGYDSAG 39
Score = 52.4 bits (126), Expect = 2e-07
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 52 MEGAFALCFKSKLFPGECVATRRGSPLLVGIK 83
+EGA+AL FKS +P E VA +RGSPLL+G+K
Sbjct: 182 LEGAYALIFKSPHYPNELVACKRGSPLLLGVK 213
>gnl|CDD|223526 COG0449, GlmS, Glucosamine 6-phosphate synthetase, contains
amidotransferase and phosphosugar isomerase domains
[Cell envelope biogenesis, outer membrane].
Length = 597
Score = 321 bits (826), Expect = e-105
Identities = 107/265 (40%), Positives = 163/265 (61%), Gaps = 3/265 (1%)
Query: 98 GKATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARG 157
G + E L ++PV VE AS+F R + + + ISQSGETAD+L ALR K +G
Sbjct: 298 GLVAKYFFERLAKIPVEVEEASEFRYREPALNPNTLVIAISQSGETADTLAALRLAKEQG 357
Query: 158 ALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISL- 216
A + +TN GS+I+RES + I AGPEIGVASTKA+T+Q ++L + AL + + R ++
Sbjct: 358 AKTLAITNVPGSTIARESDHTLLIRAGPEIGVASTKAFTAQVLALYLLALYLAKQRGTIS 417
Query: 217 QTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKI 276
+ +IK L+ + I +VL + ++++LAK + + K +GRG Y +EGALK+
Sbjct: 418 EEEERSLIKELQKLPNHIPKVLAAEEKIKELAKRLADAKDFFFLGRGVLYPVALEGALKL 477
Query: 277 KELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVI 336
KE++Y+H+EG AGELKHGP+ALID + PVI I + ++ K + + +V AR G+ IVI
Sbjct: 478 KEISYIHAEGYAAGELKHGPIALIDENTPVIAIAPKPDLFEKTKSNIQEVRARGGKIIVI 537
Query: 337 CEKGDTETQALATKTLEVPHTVDCL 361
++GD + +P + L
Sbjct: 538 ADEGDVAEDGD--DLILLPEVDELL 560
Score = 50.6 bits (122), Expect = 8e-07
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 5/36 (13%)
Query: 1 IFAYLNYLTPKTRLEIIELLIKGLKRLEYRGYDSSG 36
I Y+ + E I++L++GLKRLEYRGYDS+G
Sbjct: 4 IVGYIGF-----LREAIDILLEGLKRLEYRGYDSAG 34
Score = 44.5 bits (106), Expect = 6e-05
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 53 EGAFALCFKSKLFPGECVATRRGSPLLVGI-KTKTRLATDHIPILYGKATRQ--LLEE 107
EG++AL FP E VA R+GSPL++G+ + + LA+D +L TR+ LEE
Sbjct: 152 EGSYALLCTHSDFPDELVAARKGSPLVIGVGEGENFLASDVSALL--NFTRRFVYLEE 207
>gnl|CDD|173585 PTZ00394, PTZ00394, glucosamine-fructose-6-phosphate
aminotransferase; Provisional.
Length = 670
Score = 322 bits (826), Expect = e-105
Identities = 145/263 (55%), Positives = 188/263 (71%), Gaps = 1/263 (0%)
Query: 100 ATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGAL 159
A R L EEL LP+ VE ASDFLDR + RDDVCFF+SQSGETAD+LMAL+ CK GA+
Sbjct: 371 AVRPLFEELVPLPISVENASDFLDRRPRIQRDDVCFFVSQSGETADTLMALQLCKEAGAM 430
Query: 160 IVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTR 219
VG+TN VGSSISR +H IH+NAG E+GVASTKAYTSQ + L + AL++ D + LQ R
Sbjct: 431 CVGITNVVGSSISRLTHYAIHLNAGVEVGVASTKAYTSQVVVLTLVALLLSSDSVRLQER 490
Query: 220 RNEIIKGLKVIHEQIREVLQMDSE-VQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKE 278
RNEII+GL + I E L++ + V+ LA + E S+L++GRGY+ AT ME ALK+KE
Sbjct: 491 RNEIIRGLAELPAAISECLKITHDPVKALAARLKESSSILVLGRGYDLATAMEAALKVKE 550
Query: 279 LTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICE 338
L+Y+H+EGI +GELKHGPLALID + PV+ + T D + +A+ QV AR G +V
Sbjct: 551 LSYVHTEGIHSGELKHGPLALIDETSPVLAMCTHDKHFGLSKSAVQQVKARGGAVVVFAT 610
Query: 339 KGDTETQALATKTLEVPHTVDCL 361
+ D E +A A++ + VP TVDCL
Sbjct: 611 EVDAELKAAASEIVLVPKTVDCL 633
Score = 50.6 bits (121), Expect = 7e-07
Identities = 45/148 (30%), Positives = 64/148 (43%), Gaps = 29/148 (19%)
Query: 43 DHLARHIAIMEGAFALCFKSKLFPGECVATRRGSPLLVGIKTKTRLATDHIPILYGKATR 102
D ++EG++AL KS FPG+ A+R+GSPL+VGI+ TD G +
Sbjct: 179 DLALEVSRMVEGSYALLVKSVYFPGQLAASRKGSPLMVGIRR-----TDD----RGCVMK 229
Query: 103 QLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETA---DSLMALRYCKARGAL 159
+LT+L +E+ F DV F + E D +A YC GAL
Sbjct: 230 LQTYDLTDLSGPLEV----------FFSSDVNSFAEYTREVVFLEDGDIA-HYCD--GAL 276
Query: 160 -IVGVTNTVGSSISRESHCGIHINAGPE 186
S + RE H++A PE
Sbjct: 277 RFYNAAERQRSIVKREVQ---HLDAKPE 301
Score = 49.9 bits (119), Expect = 1e-06
Identities = 17/36 (47%), Positives = 28/36 (77%)
Query: 1 IFAYLNYLTPKTRLEIIELLIKGLKRLEYRGYDSSG 36
IF Y N+ P+T +I+ +L+ G++++EYRGYDS+G
Sbjct: 4 IFGYANHNVPRTVEQILNVLLDGIQKVEYRGYDSAG 39
>gnl|CDD|234729 PRK00331, PRK00331, glucosamine--fructose-6-phosphate
aminotransferase; Reviewed.
Length = 604
Score = 314 bits (807), Expect = e-102
Identities = 110/267 (41%), Positives = 165/267 (61%), Gaps = 5/267 (1%)
Query: 96 LYGKATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKA 155
L K L+E L +PV VE+AS+F R+ + + ISQSGETAD+L ALR K
Sbjct: 305 LVAK---YLIESLAGIPVEVEIASEFRYRDPVLSPKTLVIAISQSGETADTLAALRLAKE 361
Query: 156 RGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRIS 215
GA + + N GS+I+RES ++ +AGPEIGVASTKA+T+Q L + AL + + R +
Sbjct: 362 LGAKTLAICNVPGSTIARESDAVLYTHAGPEIGVASTKAFTAQLAVLYLLALALAKARGT 421
Query: 216 L-QTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGAL 274
L +++ L+ + I +VL + ++++LA++ + ++ L +GRG +Y +EGAL
Sbjct: 422 LSAEEEADLVHELRELPALIEQVLDLKEQIEELAEDFADARNALFLGRGVDYPVALEGAL 481
Query: 275 KIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPI 334
K+KE++Y+H+EG AGELKHGP+ALID MPV+ I D +Y K + + +V AR R I
Sbjct: 482 KLKEISYIHAEGYAAGELKHGPIALIDEGMPVVAIAPNDELYEKTKSNIQEVKARGARVI 541
Query: 335 VICEKGDTETQALATKTLEVPHTVDCL 361
VI ++GD A +EVP + L
Sbjct: 542 VIADEGDEVA-EEADDVIEVPEVHELL 567
Score = 49.7 bits (120), Expect = 1e-06
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 12/49 (24%)
Query: 15 EIIELLIKGLKRLEYRGYDSSGNNELEGDHLARHIAIMEGAFALCFKSK 63
E+L++GLKRLEYRGYDS+G IA+++ K+
Sbjct: 12 NAAEILLEGLKRLEYRGYDSAG------------IAVLDDGGLEVRKAV 48
Score = 43.1 bits (103), Expect = 2e-04
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 49 IAIMEGAFALCFKSKLFPGECVATRRGSPLLVGI 82
+ +EGA+AL K P VA R GSPL++G+
Sbjct: 151 LKRLEGAYALAVIDKDEPDTIVAARNGSPLVIGL 184
>gnl|CDD|130205 TIGR01135, glmS, glucosamine--fructose-6-phosphate aminotransferase
(isomerizing). The member from Methanococcus jannaschii
contains an intein [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan,
Central intermediary metabolism, Amino sugars].
Length = 607
Score = 269 bits (691), Expect = 2e-85
Identities = 106/265 (40%), Positives = 166/265 (62%), Gaps = 1/265 (0%)
Query: 98 GKATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARG 157
G + L+E L +PV VE+AS+F R V +D + ISQSGETAD+L ALR K G
Sbjct: 306 GLVAKYLIERLAGIPVEVEIASEFRYRKPVVDKDTLVIAISQSGETADTLAALRLAKELG 365
Query: 158 ALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQ 217
A +G+ N GS++ RES ++ AGPEIGVASTKA+T+Q L + AL + + R +L
Sbjct: 366 AKTLGICNVPGSTLVRESDHTLYTRAGPEIGVASTKAFTTQLTVLYLLALKLAKARGTLS 425
Query: 218 TR-RNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKI 276
E++ GL+ + + +VL+++ + +LA+ ++ + L +GRG Y +EGALK+
Sbjct: 426 AEEEAELVDGLRRLPALVEQVLKLEESIAELAERYADKHNFLFLGRGLGYPIALEGALKL 485
Query: 277 KELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVI 336
KE++Y+H+EG AGELKHGP+ALID +PV+ I +D ++ K + + +V AR R IV
Sbjct: 486 KEISYIHAEGYPAGELKHGPIALIDEGLPVVAIAPKDSLFEKTKSNVEEVKARGARVIVF 545
Query: 337 CEKGDTETQALATKTLEVPHTVDCL 361
++ D +++A +++P + L
Sbjct: 546 ADEDDEFLESVADDVIKLPEVEELL 570
Score = 47.6 bits (114), Expect = 6e-06
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 1 IFAYLNYLTPKTRLEIIELLIKGLKRLEYRGYDSSGNNELEGDHLARH 48
I Y+ + + + +L++GLKRLEYRGYDS+G ++ L
Sbjct: 3 IVGYI------GQRDAVPILLEGLKRLEYRGYDSAGIAVVDEGKLFVR 44
Score = 37.2 bits (87), Expect = 0.011
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 49 IAIMEGAFALCFKSKLFPGECVATRRGSPLLVGI-KTKTRLATDHIPILYGKATRQLLE 106
+ + GA+AL P VA R GSPL+VG+ + +A+D +L TR+++
Sbjct: 150 LKQLRGAYALAVLHADHPETLVAARSGSPLIVGLGDGENFVASDVTALL--PVTRRVIY 206
>gnl|CDD|240349 PTZ00295, PTZ00295, glucosamine-fructose-6-phosphate
aminotransferase; Provisional.
Length = 640
Score = 202 bits (516), Expect = 1e-59
Identities = 85/206 (41%), Positives = 121/206 (58%), Gaps = 5/206 (2%)
Query: 136 FISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAY 195
FISQSGET D + AL + V NTVGS I+R + CG+++NAG E+ VASTKA+
Sbjct: 375 FISQSGETLDVVRALNLADELNLPKISVVNTVGSLIARSTDCGVYLNAGREVAVASTKAF 434
Query: 196 TSQFISLVMFAL--VMCEDRISLQTRRNEIIKGLKVIHEQIREVLQM-DSEVQQLAKEMY 252
TSQ L + AL ++ + + +I L + I L+ + + +++A+++
Sbjct: 435 TSQVTVLSLIALWFAQNKEYSCSNYKCSSLINSLHRLPTYIGMTLKSCEEQCKRIAEKLK 494
Query: 253 EQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALID--NSMPVIMIL 310
KSM ++G+G Y +EGALKIKE+TY+H+EG G LKHGP ALID + PVI+I+
Sbjct: 495 NAKSMFILGKGLGYPIALEGALKIKEITYIHAEGFSGGALKHGPFALIDKEKNTPVILII 554
Query: 311 TRDPVYVKCMNALLQVIARDGRPIVI 336
D +NA QV AR IVI
Sbjct: 555 LDDEHKELMINAAEQVKARGAYIIVI 580
Score = 35.4 bits (82), Expect = 0.040
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 52 MEGAFALCFKSKLFPGECVATRRGSPLLVGIKTK 85
++G + LC K P + R GSPLLVGI
Sbjct: 184 LQGTWGLCIIHKDNPDSLIVARNGSPLLVGIGDD 217
>gnl|CDD|240141 cd05008, SIS_GlmS_GlmD_1, SIS (Sugar ISomerase) domain repeat 1
found in Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and
phosphosugar binding proteins. GlmS contains a
N-terminal glutaminase domain and two C-terminal SIS
domains and catalyzes the first step in hexosamine
metabolism, converting fructose 6-phosphate into
glucosamine 6-phosphate using glutamine as nitrogen
source. The glutaminase domain hydrolyzes glutamine to
glutamate and ammonia. Ammonia is transferred through a
channel to the isomerase domain for glucosamine
6-phosphate synthesis. The end product of the pathway is
N-acetylglucosamine, which plays multiple roles in
eukaryotic cells including being a building block of
bacterial and fungal cell walls. In the absence of
glutamine, GlmS catalyzes the isomerization of fructose
6-phosphate into glucose 6- phosphate (PGI-like
activity). Glucosamine-6-phosphate deaminase (GlmD)
contains two SIS domains and catalyzes the deamination
and isomerization of glucosamine-6-phosphate into
fructose-6-phosphate with the release of ammonia; in
presence of high ammonia concentration, GlmD can
catalyze the reverse reaction.
Length = 126
Score = 164 bits (417), Expect = 3e-50
Identities = 53/113 (46%), Positives = 75/113 (66%)
Query: 98 GKATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARG 157
+ LLE L +PV VE AS+F R + D + ISQSGETAD+L ALR K +G
Sbjct: 14 ALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKG 73
Query: 158 ALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMC 210
A V +TN VGS+++RE+ +++ AGPEI VA+TKA+TSQ ++L++ AL +
Sbjct: 74 AKTVAITNVVGSTLAREADYVLYLRAGPEISVAATKAFTSQLLALLLLALALA 126
>gnl|CDD|240142 cd05009, SIS_GlmS_GlmD_2, SIS (Sugar ISomerase) domain repeat 2
found in Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and
phosphosugar binding proteins. GlmS contains a
N-terminal glutaminase domain and two C-terminal SIS
domains and catalyzes the first step in hexosamine
metabolism, converting fructose 6-phosphate into
glucosamine 6-phosphate using glutamine as nitrogen
source. The glutaminase domain hydrolyzes glutamine to
glutamate and ammonia. Ammonia is transferred through a
channel to the isomerase domain for glucosamine
6-phosphate synthesis. The end product of the pathway is
N-acetylglucosamine, which plays multiple roles in
eukaryotic cells including being a building block of
bacterial and fungal cell walls. In the absence of
glutamine, GlmS catalyzes the isomerization of fructose
6-phosphate into glucose 6- phosphate (PGI-like
activity). Glucosamine-6-phosphate deaminase (GlmD)
contains two SIS domains and catalyzes the deamination
and isomerization of glucosamine-6-phosphate into
fructose-6-phosphate with the release of ammonia; in
presence of high ammonia concentration, GlmD can
catalyze the reverse reaction.
Length = 153
Score = 145 bits (368), Expect = 1e-42
Identities = 51/119 (42%), Positives = 77/119 (64%), Gaps = 2/119 (1%)
Query: 243 EVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDN 302
++++LA+++ E KS ++GRG NY T +EGALK+KE +Y+H+E AGE KHGP+AL+D
Sbjct: 2 DIKELAEKLKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDE 61
Query: 303 SMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDTETQALATKTLEVPHTVDCL 361
PVI + D + K + + +V AR + IVI + GD + LA + VP TV+ L
Sbjct: 62 GTPVIFLAPEDRLEEKLESLIKEVKARGAKVIVITDDGDAK--DLADVVIRVPATVEEL 118
>gnl|CDD|225132 COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope
biogenesis, outer membrane].
Length = 340
Score = 137 bits (348), Expect = 1e-37
Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 11/218 (5%)
Query: 98 GKATRQLLEELTELPVMVELASDFLDRNTPVF-RDDVCFFISQSGETADSLMALRYCKAR 156
+ LLE L V AS+FL D + SQSG T +S+ A K
Sbjct: 54 ATPAKYLLERELGLLVAAIPASEFLTNGAKYLGEDSLVIAFSQSGNTPESVAAAELAKEG 113
Query: 157 GALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISL 216
GAL + +TN S ++R + I AG E VA+TK++T+ ++L+ AL+ D +
Sbjct: 114 GALTIALTNEEDSPLARAADYVIPYLAGEEASVAATKSFTASLLALL--ALLAEYDGDAQ 171
Query: 217 QTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKI 276
L + + + L + + Q+ A+E ++ + +G G Y E ALK+
Sbjct: 172 LLAA------LPDLPLEAAKAL--EEDAQEFAEEYADEDRIYTLGSGPLYGAAYEAALKL 223
Query: 277 KELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDP 314
KE+ ++HSE I +GE +HGP L++ PV++ ++ D
Sbjct: 224 KEMQWIHSEAISSGEFRHGPKELVEEGTPVLLFVSEDE 261
>gnl|CDD|216466 pfam01380, SIS, SIS domain. SIS (Sugar ISomerase) domains are
found in many phosphosugar isomerases and phosphosugar
binding proteins. SIS domains are also found in proteins
that regulate the expression of genes involved in
synthesis of phosphosugars. Presumably the SIS domains
bind to the end-product of the pathway.
Length = 131
Score = 105 bits (265), Expect = 7e-28
Identities = 48/111 (43%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 98 GKATRQLLEELTELPVMVELASDFLDRN-TPVFRDDVCFFISQSGETADSLMALRYCKAR 156
LEE+ + V VE AS+F V DD+ ISQSGET D L A + KAR
Sbjct: 20 ALELALKLEEIGYIVVEVEDASEFRHGPLALVDPDDLVIAISQSGETRDLLEAAKLLKAR 79
Query: 157 GALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFAL 207
GA I+ +T++ GS ++RE+ ++I AGPE GVASTK+ T Q L A+
Sbjct: 80 GAKIIAITDSKGSPLAREADHVLYIIAGPEAGVASTKSLTLQLALLDALAI 130
Score = 84.3 bits (209), Expect = 6e-20
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 250 EMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMI 309
++ + K + ++G G +YA +E ALK++E+ Y+ E A E +HGPLAL+D VI I
Sbjct: 1 KLAKAKRIYVIGAGTSYAAALELALKLEEIGYIVVEVEDASEFRHGPLALVDPDDLVIAI 60
Query: 310 LTRDPVYVKCMNALLQVI-ARDGRPIVICEKGDTETQALATKTLEVP 355
+ + +++ AR + I I + + A L +
Sbjct: 61 SQSG--ETRDLLEAAKLLKARGAKIIAITDSKGSPLAREADHVLYII 105
>gnl|CDD|238366 cd00714, GFAT, Glutamine amidotransferases class-II
(Gn-AT)_GFAT-type. This domain is found at the
N-terminus of glucosamine-6P synthase (GlmS, or GFAT in
humans). The glutaminase domain catalyzes amide
nitrogen transfer from glutamine to the appropriate
substrate. In this process, glutamine is hydrolyzed to
glutamic acid and ammonia. In humans, GFAT catalyzes the
first and rate-limiting step of hexosamine metabolism,
the conversion of D-fructose-6P (Fru6P) into
D-glucosamine-6P using L-glutamine as a nitrogen source.
The end product of this pathway, UDP-N-acetyl
glucosamine, is a major building block of the bacterial
peptidoglycan and fungal chitin.
Length = 215
Score = 59.0 bits (144), Expect = 3e-10
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 52 MEGAFALCFKSKLFPGECVATRRGSPLLVGIKTKTR-LATDHIPIL 96
+EGA+AL SK P E VA R GSPL++GI +A+D +L
Sbjct: 153 LEGAYALAVISKDEPDEIVAARNGSPLVIGIGDGENFVASDAPALL 198
Score = 55.1 bits (134), Expect = 7e-09
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 6/36 (16%)
Query: 1 IFAYLNYLTPKTRLEIIELLIKGLKRLEYRGYDSSG 36
I Y+ E +++L++GLKRLEYRGYDS+G
Sbjct: 3 IVGYIGKR------EAVDILLEGLKRLEYRGYDSAG 32
>gnl|CDD|240214 cd05710, SIS_1, A subgroup of the SIS domain. SIS (Sugar ISomerase)
domains are found in many phosphosugar isomerases and
phosphosugar binding proteins. SIS domains are also
found in proteins that regulate the expression of genes
involved in synthesis of phosphosugars.
Length = 120
Score = 53.0 bits (128), Expect = 7e-09
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 103 QLLEELTELPVMVELASDFLDRNTPVFRDD-VCFFISQSGETADSLMALRYCKARGALIV 161
L++ ++LPV V A++FL + V S SG T +++ A ++ K +GA ++
Sbjct: 19 YFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNTKETVAAAKFAKEKGATVI 78
Query: 162 GVTNTVGSSISRESH 176
G+T+ S +++ +
Sbjct: 79 GLTDDEDSPLAKLAD 93
>gnl|CDD|240140 cd05007, SIS_Etherase, N-acetylmuramic acid 6-phosphate etherase.
Members of this family contain the SIS (Sugar ISomerase)
domain. The SIS domain is found in many phosphosugar
isomerases and phosphosugar binding proteins. The
bacterial cell wall sugar N-acetylmuramic acid carries a
unique D-lactyl ether substituent at the C3 position.
The etherase catalyzes the cleavage of the lactyl ether
bond of N-acetylmuramic acid 6-phosphate.
Length = 257
Score = 52.5 bits (127), Expect = 7e-08
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 131 DDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVA 190
DV I+ SG T L ALRY +ARGAL +G+ GS + + + I + GPE+
Sbjct: 119 RDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAIALITGPEVVAG 178
Query: 191 ST--KAYTSQFISLVMF 205
ST KA T+Q ++L M
Sbjct: 179 STRLKAGTAQKLALNML 195
>gnl|CDD|240145 cd05014, SIS_Kpsf, KpsF-like protein. KpsF is an
arabinose-5-phosphate isomerase which contains SIS
(Sugar ISomerase) domains. SIS domains are found in many
phosphosugar isomerases and phosphosugar binding
proteins. KpsF catalyzes the reversible reaction of
ribulose 5-phosphate to arabinose 5-phosphate. This is
the second step in the CMP-Kdo biosynthesis pathway.
Length = 128
Score = 50.2 bits (121), Expect = 7e-08
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 130 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESH----CGIHINAGP 185
DV IS SGET + L L + K RGA I+ +T S++++ S + A P
Sbjct: 47 PGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLPVEEEACP 106
Query: 186 EIGVASTKAYTSQFISLVMF-ALVMC 210
+G+A T TS L + AL +
Sbjct: 107 -LGLAPT---TSTTAMLALGDALAVA 128
>gnl|CDD|235467 PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase;
Reviewed.
Length = 299
Score = 52.5 bits (127), Expect = 1e-07
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 137 ISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVAST--KA 194
I+ SG T + AL Y + RGAL +G++ GS +S+E+ I + GPE+ ST KA
Sbjct: 138 IAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKEADIAIEVVVGPEVLTGSTRMKA 197
Query: 195 YTSQFISLVMFA-LVM 209
T+Q + L M + VM
Sbjct: 198 GTAQKLVLNMISTGVM 213
>gnl|CDD|225014 COG2103, COG2103, Predicted sugar phosphate isomerase [General
function prediction only].
Length = 298
Score = 50.8 bits (122), Expect = 4e-07
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 131 DDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVA 190
DV I+ SG T + AL Y + RGA +G+ GS+ISR + I GPE+
Sbjct: 130 KDVVVGIAASGRTPYVIGALEYARQRGATTIGIACNPGSAISRIADIAIEPVVGPEVLTG 189
Query: 191 ST--KAYTSQFISLVMF 205
ST KA T+Q + L M
Sbjct: 190 STRLKAGTAQKLVLNML 206
>gnl|CDD|183111 PRK11382, frlB, fructoselysine-6-P-deglycase; Provisional.
Length = 340
Score = 50.8 bits (121), Expect = 4e-07
Identities = 59/248 (23%), Positives = 102/248 (41%), Gaps = 16/248 (6%)
Query: 94 PILYGKATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFI--SQSGETADSLMALR 151
P+ + + L + ++L V +F D NTP DD C I S G+T + + AL
Sbjct: 55 PLNAAQTAKHLADRFSDLQVYAISGWEFCD-NTPYRLDDRCAVIGVSDYGKTEEVIKALE 113
Query: 152 YCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCE 211
+A GAL T S I+ + I A + Y S+V+ +
Sbjct: 114 LGRACGALTAAFTKRADSPITSAAEFSIDYQADCIWEIHLLLCY-----SVVLEMITRLA 168
Query: 212 DRISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKE---MYEQKSMLLMGRGYNYAT 268
+ +N++ + + +R + ++ +LA + +Y + L GY
Sbjct: 169 PNAEIGKIKNDLKQLPNALGHLVRTWEEKGRQLGELASQWPMIYTVAAGPLRPLGYK--- 225
Query: 269 CMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIA 328
EG + + E T+ H I +GE +HGPL +++ +P + +L D A+ V
Sbjct: 226 --EGIVTLMEFTWTHGCVIESGEFRHGPLEIVEPGVPFLFLLGNDESRHTTERAINFVKQ 283
Query: 329 RDGRPIVI 336
R IVI
Sbjct: 284 RTDNVIVI 291
>gnl|CDD|240144 cd05013, SIS_RpiR, RpiR-like protein. RpiR contains a SIS (Sugar
ISomerase) domain, which is found in many phosphosugar
isomerases and phosphosugar binding proteins. In E.
coli, rpiR negatively regulates the expression of rpiB
gene. Both rpiB and rpiA are ribose phosphate isomerases
that catalyze the reversible reactions of ribose
5-phosphate into ribulose 5-phosphate.
Length = 139
Score = 48.0 bits (115), Expect = 6e-07
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 130 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGV 189
DV IS SGET +++ A K RGA ++ +T++ S +++ + I + E G
Sbjct: 60 PGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLAD--IVLLVSSEEGD 117
Query: 190 ASTKAYTSQFISLVMF-ALVMC 210
+ A++S+ L + AL +
Sbjct: 118 FRSSAFSSRIAQLALIDALFLA 139
>gnl|CDD|223865 COG0794, GutQ, Predicted sugar phosphate isomerase involved in
capsule formation [Cell envelope biogenesis, outer
membrane].
Length = 202
Score = 48.0 bits (115), Expect = 2e-06
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 109 TELPVMVELASDFLDRNTPVF-RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTV 167
T P ++ L + + DV IS SGET + L K GA ++ +T+
Sbjct: 64 TGTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELLNLAPKAKRLGAKLIAITSNP 123
Query: 168 GSSISRESHCGIHINAGPE---IGVASTKAYTSQFISLVMF-ALVMC--EDR 213
SS+++ + + I E +G+A T TS ++L + AL E R
Sbjct: 124 DSSLAKAADVVLVIPVKTEACPLGLAPT---TSTTLTLALGDALAGTLFEAR 172
>gnl|CDD|224651 COG1737, RpiR, Transcriptional regulators [Transcription].
Length = 281
Score = 47.7 bits (114), Expect = 4e-06
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 130 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESH 176
DV IS SG T + + A K RGA ++ +T++ S +++ +
Sbjct: 177 PGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLAD 223
>gnl|CDD|129375 TIGR00274, TIGR00274, N-acetylmuramic acid 6-phosphate etherase.
This protein, MurQ, is involved in recycling components
of the bacterial murein sacculus turned over during cell
growth. The cell wall metabolite anhydro-N-acetylmuramic
acid (anhMurNAc) is converted by a kinase, AnmK, to
MurNAc-phosphate, then converted to
N-acetylglucosamine-phosphate by this etherase, called
MurQ. This family of proteins is similar to the
C-terminal half of a number of vertebrate glucokinase
regulator proteins and contains a Prosite pattern which
is shared by this group of proteins in a region of local
similarity [Cell envelope, Biosynthesis and degradation
of murein sacculus and peptidoglycan].
Length = 291
Score = 44.1 bits (104), Expect = 5e-05
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 124 RNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINA 183
+N + ++DV I+ SG T + L+Y ++ GAL + + S+ S + I
Sbjct: 120 QNIHLTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIETIV 179
Query: 184 GPEIGVAST--KAYTSQFISLVM 204
GPEI S+ KA T+Q + L M
Sbjct: 180 GPEILTGSSRLKAGTAQKMVLNM 202
>gnl|CDD|240112 cd04795, SIS, SIS domain. SIS (Sugar ISomerase) domains are found
in many phosphosugar isomerases and phosphosugar binding
proteins. SIS domains are also found in proteins that
regulate the expression of genes involved in synthesis
of phosphosugars.
Length = 87
Score = 40.8 bits (96), Expect = 6e-05
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 96 LYGKATRQLLEELTELPVMVELASDFLDRNTPVF--RDDVCFFISQSGETADSLMALRYC 153
L ELT + V+ +A++ + + DV +S SG T + L AL
Sbjct: 11 AIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEELLAALEIA 70
Query: 154 KARGALIVGVT 164
K G ++ +T
Sbjct: 71 KELGIPVIAIT 81
Score = 33.9 bits (78), Expect = 0.016
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 261 GRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCM 320
G G + A AL++ ELT + ++A EL+H L + V++ L+ + +
Sbjct: 5 GIGGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRT-EEL 63
Query: 321 NALLQVIARDGRPIVI 336
A L++ G P++
Sbjct: 64 LAALEIAKELGIPVIA 79
>gnl|CDD|131862 TIGR02815, agaS_fam, putative sugar isomerase, AgaS family. Some
members of this protein family are found in regions
associated with N-acetyl-galactosamine and galactosamine
untilization and are suggested to be isomerases.
Length = 372
Score = 42.1 bits (99), Expect = 3e-04
Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 20/161 (12%)
Query: 194 AYTSQFISLVMFALVMCEDRISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYE 253
A TS F + + L + + +T ++ + I E Q D L +E
Sbjct: 160 AMTSSFSCMTLATLAV----LGPETIESQTEERFADAALCILESGQWDFSEGVLGYAPWE 215
Query: 254 QKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGEL--KHGPLALIDNSMPVIMILT 311
+ ++ +G G E ALK+ ELT L +HGP +L+D+ V++ ++
Sbjct: 216 R--IVYLGSGGLQGLARESALKVLELTAGKVMAFYDSSLGFRHGPKSLVDDETLVVVYVS 273
Query: 312 RDPVYVKCM-----------NALLQVIARDGRPIVICEKGD 341
DP Y + N +V+A I GD
Sbjct: 274 SDP-YTRQYDLDLLAELRRDNQAGRVVAISAESSDIVAAGD 313
>gnl|CDD|215851 pfam00310, GATase_2, Glutamine amidotransferases class-II.
Length = 223
Score = 38.9 bits (91), Expect = 0.002
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 1 IFAYLNYLTPKTRLEIIELLIKGLKRLEYRGY------DSSG 36
I ++ ++ K +++E ++ L+RLE+RG D +G
Sbjct: 3 ILGFIAHIKGKASHDVVEDALEALERLEHRGGVGADGNDGAG 44
>gnl|CDD|237142 PRK12570, PRK12570, N-acetylmuramic acid-6-phosphate etherase;
Reviewed.
Length = 296
Score = 38.5 bits (90), Expect = 0.003
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 131 DDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVA 190
DDV I+ SG T + AL Y K GA + ++ S I++ + I GPE+
Sbjct: 128 DDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKIADIAISPVVGPEVLTG 187
Query: 191 ST--KAYTSQFISLVMF 205
ST K+ T+Q + L M
Sbjct: 188 STRLKSGTAQKMVLNML 204
>gnl|CDD|222238 pfam13580, SIS_2, SIS domain. SIS (Sugar ISomerase) domains are
found in many phosphosugar isomerases and phosphosugar
binding proteins. SIS domains are also found in proteins
that regulate the expression of genes involved in
synthesis of phosphosugars.
Length = 138
Score = 36.8 bits (86), Expect = 0.004
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 104 LLEELTELPVMVELASDFLDRN----TPVFRD------DVCFFISQSGETADSLMALRYC 153
LL +L AS+ L+R+ + R DV IS SG A + A
Sbjct: 67 LLPDLALHEGAPTTASNDLERDEGYARQILRLYDIRPGDVLIVISNSGRNAVPIEAALAA 126
Query: 154 KARGALIVGVTN 165
K RG ++ +T+
Sbjct: 127 KERGMKVIALTS 138
>gnl|CDD|183089 PRK11337, PRK11337, DNA-binding transcriptional repressor RpiR;
Provisional.
Length = 292
Score = 37.8 bits (88), Expect = 0.005
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 131 DDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESH 176
DV +S SG T+D + A+ K GA I+ +TN+ S I++ +
Sbjct: 188 GDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLAD 233
>gnl|CDD|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase).
The glutaminase domain catalyzes an amide nitrogen
transfer from glutamine to the appropriate substrate.
In this process, glutamine is hydrolyzed to glutamic
acid and ammonia. This domain is related to members of
the Ntn (N-terminal nucleophile) hydrolase superfamily
and is found at the N-terminus of enzymes such as
glucosamine-fructose 6-phosphate synthase (GLMS or
GFAT), glutamine phosphoribosylpyrophosphate (Prpp)
amidotransferase (GPATase), asparagine synthetase B
(AsnB), beta lactam synthetase (beta-LS) and glutamate
synthase (GltS). GLMS catalyzes the formation of
glucosamine 6-phosphate from fructose 6-phosphate and
glutamine in amino sugar synthesis. GPATase catalyzes
the first step in purine biosynthesis, an amide
transfer from glutamine to PRPP, resulting in
phosphoribosylamine, pyrophosphate and glutamate.
Asparagine synthetase B synthesizes asparagine from
aspartate and glutamine. Beta-LS catalyzes the
formation of the beta-lactam ring in the beta-lactamase
inhibitor clavulanic acid. GltS synthesizes L-glutamate
from 2-oxoglutarate and L-glutamine. These enzymes are
generally dimers, but GPATase also exists as a
homotetramer.
Length = 220
Score = 36.7 bits (85), Expect = 0.010
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 17/92 (18%)
Query: 1 IFAYLNYLTPKTRLEIIELLIKGLKRLEYRGYDSSGNNELEGDHLARHIAIMEGAFALCF 60
IF + + L + LL++GL LE+RG D +G IA+ +G
Sbjct: 3 IFGIVGADGAASLL--LLLLLRGLAALEHRGPDGAG------------IAVYDGDGLFVE 48
Query: 61 KSKLFPGECVATRRGSPLL--VGIKTKTRLAT 90
K + PL V + RLAT
Sbjct: 49 KRAGPVSDVALDLLDEPLKSGVAL-GHVRLAT 79
Score = 28.2 bits (63), Expect = 5.4
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 4/61 (6%)
Query: 32 YDSSGNNELEGDHLARHIAIMEGAFALCFKSKLFPGECVATRRG---SPLLVGIKTKTRL 88
+ G + + + ++G FA P A R PL GI L
Sbjct: 136 LERLGREGGLFEAVEDALKRLDGPFAFALWDGK-PDRLFAARDRFGIRPLYYGITKDGGL 194
Query: 89 A 89
Sbjct: 195 V 195
>gnl|CDD|240143 cd05010, SIS_AgaS_like, AgaS-like protein. AgaS contains a SIS
(Sugar ISomerase) domain which is found in many
phosphosugar isomerases and phosphosugar binding
proteins. AgaS is a putative isomerase in Escherichia
coli. It is similar to the glucosamine-6-phosphate
synthases (GlmS) which catalyzes the first step in
hexosamine metabolism, converting fructose 6-phosphate
into glucosamine 6-phosphate using glutamine as nitrogen
source.
Length = 151
Score = 34.9 bits (81), Expect = 0.021
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 261 GRGYNYATCMEGALKIKELTYMHSEGIMAGEL----------KHGPLALIDNSMPVIMIL 310
G G E ALK+ ELT AG++ +HGP +L+D+ V++ +
Sbjct: 5 GSGPLAGLAREAALKVLELT--------AGKVATVYDSPLGFRHGPKSLVDDDTLVVVFV 56
Query: 311 TRDPVYVKCMNALLQVIARDG---RPIVICEKGDTETQALATKTLEVPHTVD 359
+ DP + LL+ + RDG R I I + D + + L +D
Sbjct: 57 SNDPYTRQYDLDLLKELRRDGIAARVIAISPESDAGIEDNSHYYLPGSRDLD 108
>gnl|CDD|240138 cd05005, SIS_PHI, Hexulose-6-phosphate isomerase (PHI). PHI is a
member of the SIS (Sugar ISomerase domain) superfamily.
In the ribulose monophosphate pathway of formaldehyde
fixation, hexulose-6-phosphate synthase catalyzes the
condensation of ribulose-5-phosphate with formadelhyde
to become hexulose-6-phosphate, which is then isomerized
to fructose-6-phosphate by PHI.
Length = 179
Score = 32.9 bits (76), Expect = 0.12
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 125 NTPVF-RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINA 183
TP D+ IS SGET+ + A K GA +V +T+ S +++ + + I A
Sbjct: 69 TTPAIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPA 128
>gnl|CDD|132171 TIGR03127, RuMP_HxlB, 6-phospho 3-hexuloisomerase. Members of this
protein family are 6-phospho 3-hexuloisomerase (PHI), or
the PHI domain of a fusion protein. This enzyme is part
of the ribulose monophosphate (RuMP) pathway, which in
one direction removes the toxic metabolite formaldehyde
by assimilation into fructose-6-phosphate. In the other
direction, in species lacking a complete pentose
phosphate pathway, the RuMP pathway yields
ribulose-5-phosphate, necessary for nucleotide
biosynthesis, at the cost of also yielding formaldehyde.
These latter species tend usually have a
formaldehyde-activating enzyme to attach formaldehyde to
the C1 carrier tetrahydromethanopterin.
Length = 179
Score = 31.9 bits (73), Expect = 0.33
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 126 TPVFR-DDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISR 173
TP + D+ IS SGET + + K GA + +T S++ +
Sbjct: 67 TPSIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTLGK 115
>gnl|CDD|179510 PRK02947, PRK02947, hypothetical protein; Provisional.
Length = 246
Score = 32.1 bits (74), Expect = 0.36
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 117 LASDFLDRNTPVFRDDVCFFISQSGETADSL-MALRYCKARGALIVGVTN 165
A LDR + DV +S SG + MAL K RGA ++ VT+
Sbjct: 94 YAKAILDR-YDIRPGDVLIVVSNSGRNPVPIEMAL-EAKERGAKVIAVTS 141
>gnl|CDD|180905 PRK07246, PRK07246, bifunctional ATP-dependent DNA helicase/DNA
polymerase III subunit epsilon; Validated.
Length = 820
Score = 31.6 bits (72), Expect = 0.74
Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 287 IMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVI 336
+ + K L ++D MP++ + D VY + + L+ + + +PI++
Sbjct: 604 KIEKDKKQDQLVVVDQDMPLVTETS-DEVYAEEIAKRLEELKQLQQPILV 652
>gnl|CDD|240148 cd05017, SIS_PGI_PMI_1, The members of this protein family contain
the SIS (Sugar ISomerase) domain and have both the
phosphoglucose isomerase (PGI) and the phosphomannose
isomerase (PMI) functions. These functions catalyze the
reversible reactions of glucose 6-phosphate to fructose
6-phosphate, and mannose 6-phosphate to fructose
6-phosphate, respectively at an equal rate. This protein
contains two SIS domains. This alignment is based on the
first SIS domain.
Length = 119
Score = 29.9 bits (68), Expect = 0.74
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 102 RQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIV 161
LL + ++PV V + L V R + +S SG T ++L A+ K RGA IV
Sbjct: 18 ESLLLDEAKIPVYV-VKDYTLPA--FVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIV 74
Query: 162 GVT 164
+T
Sbjct: 75 AIT 77
>gnl|CDD|222886 PHA02577, 2, DNA end protector protein; Provisional.
Length = 181
Score = 30.5 bits (69), Expect = 0.82
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 5 LNYLTPKTRLEIIELLIKGLK 25
L+YL PK R +E L+K
Sbjct: 86 LHYLPPKARQLFLEELLKQYA 106
>gnl|CDD|153427 cd07998, WGR_DNA_ligase, WGR domain of bacterial DNA ligases. The
WGR domain is found in a small family of predicted
bacterial DNA ligases. It has been called WGR after the
most conserved central motif of the domain. The domain
typically occurs in together with an ATP-dependent DNA
ligase domain, and is between 70 and 80 residues in
length. It has been proposed to function as a nucleic
acid binding domain.
Length = 77
Score = 28.8 bits (65), Expect = 1.00
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 7/30 (23%)
Query: 73 RRGSPLLVGIKTKTRLATDHIPILYGKATR 102
RRGS L G KT P+ A +
Sbjct: 36 RRGSALREGTKTVA-------PVTLEAAEK 58
>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein. This model describes a
number of closely related proteins with the
phosphosugar-binding domain SIS (Sugar ISomerase)
followed by two copies of the CBS (named after
Cystathionine Beta Synthase) domain. One is GutQ, a
protein of the glucitol operon. Another is KpsF, a
virulence factor involved in capsular polysialic acid
biosynthesis in some pathogenic strains of E. coli
[Energy metabolism, Sugars].
Length = 268
Score = 29.4 bits (66), Expect = 2.8
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 132 DVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVAS 191
DV IS SGE+ + L + + K I+ T + SS++R + + I E +
Sbjct: 49 DVVLMISYSGESLELLNLIPHLKRLSHKIIAFTGSPNSSLARAADYVLDIKVEKEACPIN 108
Query: 192 TKAYTSQFISLVMF-ALVMC 210
TS ++L + AL +
Sbjct: 109 LAPTTSTTLTLALGDALAVA 128
>gnl|CDD|227158 COG4821, COG4821, Uncharacterized protein containing SIS (Sugar
ISomerase) phosphosugar binding domain [General function
prediction only].
Length = 243
Score = 29.4 bits (66), Expect = 2.8
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 117 LASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVT 164
A FL R + +DV IS SG + Y + +GA ++ VT
Sbjct: 92 YAKLFLHRLQ-IRPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVT 138
>gnl|CDD|187678 cd09620, CBM9_like_3, DOMON-like type 9 carbohydrate binding
module. Family 9 carbohydrate-binding modules (CBM9)
play a role in the microbial degradation of cellulose
and hemicellulose (materials found in plants). The
domain has previously been called cellulose-binding
domain. The polysaccharide binding sites of CBMs with
available 3D structure have been found to be either flat
surfaces with interactions formed by predominantly
aromatic residues (tryptophan and tyrosine), or extended
shallow grooves. CBM9 domains found in this
uncharacterized heterogeneous subfamily may co-occur
with various other domains.
Length = 200
Score = 28.9 bits (65), Expect = 3.5
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 119 SDFLDRNTPVFRDDVC-FFISQSGET 143
+ + +R+ PV+ DDV FI G+
Sbjct: 56 ATYTERDDPVWEDDVVEVFIDPDGDG 81
>gnl|CDD|234166 TIGR03310, matur_ygfJ, molybdenum hydroxylase accessory protein,
YgfJ family. Members of this protein family are
probable accessory proteins for the biosynthesis of
enzymes related to xanthine dehydrogenase. Comparative
genomics suggests a role in the maturation of
selenium-dependent molybdenum hydroxylases, although a
tenuous alternative hypothesis is a role for this
protein (with a requirement for SelD, the selenium donor
protein in the selenocysteine and selenouridine
biosynthesis pathways) metabolizing a
selenium-containing substrate such as selenate.
Length = 188
Score = 28.5 bits (64), Expect = 4.1
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 73 RRGSPLLVGIKTKTRLATDHIPILYG-KATRQLLEELTELPVMVELASD--FLDRNTP 127
+RG P+L K L L G RQ+L EL VE+ D +TP
Sbjct: 130 KRGHPVLFPRKLFPELLA-----LTGDTGGRQILRELPHEVKYVEVKDPGILFDIDTP 182
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 28.8 bits (65), Expect = 4.5
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 9/40 (22%)
Query: 127 PVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNT 166
P+F D + Q D+++ R +A GA+ +G TNT
Sbjct: 101 PIFAD----QVPQ----EDAIVVERM-RAAGAIFIGKTNT 131
>gnl|CDD|223152 COG0074, SucD, Succinyl-CoA synthetase, alpha subunit [Energy
production and conversion].
Length = 293
Score = 28.7 bits (65), Expect = 5.0
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 145 DSLMALRYCKARGALIVGVTNTVGSSISRESHCGI---HINAGPEIGVAS 191
D L RY + +G ++G N G E GI +I IG+ S
Sbjct: 104 DMLELKRYAREKGTRLIG-PNCPGIITPGECKIGIMPGNIYKPGNIGIVS 152
>gnl|CDD|204401 pfam10119, MethyTransf_Reg, Predicted methyltransferase regulatory
domain. Members of this family of domains are found in
various prokaryotic methyltransferases, where they
regulate the activity of the methyltransferase domain.
Length = 86
Score = 26.8 bits (60), Expect = 5.3
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 2/42 (4%)
Query: 91 DHIPILYGKATRQLLEELTELPVMVELASDFLDRNTPVFRDD 132
D LY + + P + E DFL FR
Sbjct: 43 DSYDELYLEHVAEAALAALPDPRLREQYLDFLVNR--QFRRS 82
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 28.9 bits (65), Expect = 5.4
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 142 ETADSLMALRYCKARGALIVGVTNT 166
TADS + R +A GA+IVG TNT
Sbjct: 111 ATADSEVV-RRLRAAGAVIVGKTNT 134
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed.
Length = 544
Score = 28.5 bits (64), Expect = 6.1
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 305 PVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKGDTETQALAT 349
P I++ + ++ + +L+ + + GRP++I + D E +ALAT
Sbjct: 218 PYILLHEKKISNLQDLLPILEAVVQSGRPLLIIAE-DVEGEALAT 261
>gnl|CDD|223794 COG0722, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP)
synthase [Amino acid transport and metabolism].
Length = 351
Score = 28.3 bits (64), Expect = 6.1
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 99 KATRQLLEELTELPVMVELASDFLDRNTPVFRDD 132
+ R+LL ++ EL + A++FLD +P + D
Sbjct: 124 RIARKLLLDVNELGL--PTATEFLDPISPQYLAD 155
>gnl|CDD|240139 cd05006, SIS_GmhA, Phosphoheptose isomerase is a member of the SIS
(Sugar ISomerase) superfamily. Phosphoheptose isomerase
catalyzes the isomerization of sedoheptulose 7-phosphate
into D-glycero-D-mannoheptose 7-phosphate. This is the
first step of the biosynthesis of gram-negative bacteria
inner core lipopolysaccharide precursor,
L-glycero-D-mannoheptose (Gmh).
Length = 177
Score = 27.9 bits (63), Expect = 6.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 132 DVCFFISQSGETADSLMALRYCKARGALIVGVT 164
DV IS SG + + L AL K RG + +T
Sbjct: 103 DVLIGISTSGNSPNVLKALEAAKERGMKTIALT 135
>gnl|CDD|181536 PRK08674, PRK08674, bifunctional phosphoglucose/phosphomannose
isomerase; Validated.
Length = 337
Score = 28.4 bits (64), Expect = 6.6
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 102 RQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFI--SQSGETADSLMALRYCKARGAL 159
R LL + ++PV V D P F D+ I S SG T ++L A+ RGA
Sbjct: 53 RILLFDELKVPVFV-----NRDYTLPAFVDEKTLVIAVSYSGNTEETLSAVEQALKRGAK 107
Query: 160 IVGVT 164
I+ +T
Sbjct: 108 IIAIT 112
>gnl|CDD|218293 pfam04855, SNF5, SNF5 / SMARCB1 / INI1. SNF5 is a component of the
yeast SWI/SNF complex, which is an ATP-dependent
nucleosome-remodelling complex that regulates the
transcription of a subset of yeast genes. SNF5 is a key
component of all SWI/SNF-class complexes characterized
so far. This family consists of the conserved region of
SNF5, including a direct repeat motif. SNF5 is essential
for the assembly promoter targeting and chromatin
remodelling activity of the SWI-SNF complex. SNF5 is
also known as SMARCB1, for SWI/SNF-related,
matrix-associated, actin-dependent regulator of
chromatin, subfamily b, member 1, and also INI1 for
integrase interactor 1. Loss-of function mutations in
SNF5 are thought to contribute to oncogenesis in
malignant rhabdoid tumours (MRTs).
Length = 228
Score = 28.0 bits (63), Expect = 7.5
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 200 ISLVMFALVMCED-RISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYE 253
I+ FA ++CED + +I I EQI E + + QL E +
Sbjct: 36 ITPEEFAEILCEDLDLPNSPFIQQI---SSSIREQIEE-YAGVALLPQLEPEDPD 86
>gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH. This
family describes YqeH, a member of a larger family of
GTPases involved in ribosome biogenesis. Like YqlF, it
shows a cyclical permutation relative to GTPases EngA
(in which the GTPase domain is duplicated), Era, and
others. Members of this protein family are found in a
relatively small number of bacterial species, including
Bacillus subtilis but not Escherichia coli [Protein
synthesis, Other].
Length = 360
Score = 28.0 bits (63), Expect = 9.4
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 132 DVCFFISQSGETADSLMAL--RYCKARGALIVGVTNTVGSS 170
D+ ++ G D L+ + + +VGVTN VG S
Sbjct: 129 DIILVSAKKGNGIDELLDKIKKARNKKDVYVVGVTN-VGKS 168
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.395
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,065,808
Number of extensions: 1739935
Number of successful extensions: 1825
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1810
Number of HSP's successfully gapped: 84
Length of query: 361
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 263
Effective length of database: 6,590,910
Effective search space: 1733409330
Effective search space used: 1733409330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)