RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1915
(361 letters)
>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1;
glucosamine-6-phosphate synthase, aldose/ketose
isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo
sapiens} PDB: 2zj4_A* 2v4m_A*
Length = 375
Score = 441 bits (1136), Expect = e-155
Identities = 202/264 (76%), Positives = 234/264 (88%)
Query: 98 GKATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARG 157
G ATRQ+LEELTELPVMVELASDFLDRNTPVFRDDVCFF+SQSGETAD+LM LRYCK RG
Sbjct: 75 GVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFFLSQSGETADTLMGLRYCKERG 134
Query: 158 ALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQ 217
AL VG+TNTVGSSISRE+ CG+HINAGPEIGVASTKAYTSQF+SLVMFAL+MC+DRIS+Q
Sbjct: 135 ALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFVSLVMFALMMCDDRISMQ 194
Query: 218 TRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIK 277
RR EI+ GLK + + I+EVL MD E+Q+LA E+Y QKS+L+MGRGY+YATC+EGALKIK
Sbjct: 195 ERRKEIMLGLKRLPDLIKEVLSMDDEIQKLATELYHQKSVLIMGRGYHYATCLEGALKIK 254
Query: 278 ELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVIC 337
E+TYMHSEGI+AGELKHGPLAL+D MPVIMI+ RD Y KC NAL QV+AR GRP+VIC
Sbjct: 255 EITYMHSEGILAGELKHGPLALVDKLMPVIMIIMRDHTYAKCQNALQQVVARQGRPVVIC 314
Query: 338 EKGDTETQALATKTLEVPHTVDCL 361
+K DTET +T++VPH+VDCL
Sbjct: 315 DKEDTETIKNTKRTIKVPHSVDCL 338
>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat
transaminase (isomerizing); glucosamine-6-phosphate
synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB:
2put_A* 2puv_A* 2puw_A*
Length = 367
Score = 421 bits (1085), Expect = e-148
Identities = 168/266 (63%), Positives = 213/266 (80%), Gaps = 2/266 (0%)
Query: 98 GKATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARG 157
ATR + EELTE+PV VELASDFLDR +PVFRDD C F+SQSGETADS++AL+YC RG
Sbjct: 65 CLATRSIFEELTEIPVSVELASDFLDRRSPVFRDDTCVFVSQSGETADSILALQYCLERG 124
Query: 158 ALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQ 217
AL VG+ N+VGSS+SR++HCG+HINAGPEIGVASTKAYTSQ+I+LVMFAL + D IS +
Sbjct: 125 ALTVGIVNSVGSSMSRQTHCGVHINAGPEIGVASTKAYTSQYIALVMFALSLSNDSISRK 184
Query: 218 TRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMY-EQKSMLLMGRGYNYATCMEGALKI 276
R EIIKGL+ I EQI++VL+++++++ L +QKS+LL+GRGY +AT +EGALKI
Sbjct: 185 GRHEEIIKGLQKIPEQIKQVLKLENKIKDLCNSSLNDQKSLLLLGRGYQFATALEGALKI 244
Query: 277 KELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVI 336
KE++YMHSEG++AGELKHG LAL+D +P+I TRD ++ K M+A+ QV ARDGRPIVI
Sbjct: 245 KEISYMHSEGVLAGELKHGILALVDEDLPIIAFATRDSLFPKVMSAIEQVTARDGRPIVI 304
Query: 337 CEKGDTE-TQALATKTLEVPHTVDCL 361
C +GD + TLEVP TVDCL
Sbjct: 305 CNEGDAIISNDKVHTTLEVPETVDCL 330
>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET:
GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB:
1mor_A* 1mos_A*
Length = 368
Score = 322 bits (827), Expect = e-109
Identities = 98/261 (37%), Positives = 152/261 (58%), Gaps = 1/261 (0%)
Query: 102 RQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGAL-I 160
R E L +P VE+AS+F R + V R+ + +SQSGETAD+L LR K G L
Sbjct: 71 RYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGS 130
Query: 161 VGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRR 220
+ + N GSS+ RES + NAG EIGVASTKA+T+Q L+M + + +
Sbjct: 131 LAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSRLKGLDASIE 190
Query: 221 NEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELT 280
++I+ GL+ + +I ++L D ++ LA++ ++ L +GRG Y +EGALK+KE++
Sbjct: 191 HDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPIALEGALKLKEIS 250
Query: 281 YMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKG 340
Y+H+E AGELKHGPLALID MPVI++ + + K + + +V AR G+ V ++
Sbjct: 251 YIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQD 310
Query: 341 DTETQALATKTLEVPHTVDCL 361
+ +E+PH + +
Sbjct: 311 AGFVSSDNMHIIEMPHVEEVI 331
>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing];
structural genomics; 2.28A {Francisella tularensis
subsp}
Length = 372
Score = 317 bits (814), Expect = e-107
Identities = 93/263 (35%), Positives = 154/263 (58%), Gaps = 3/263 (1%)
Query: 102 RQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGAL-I 160
+ +E+ ++P VE+AS+ R+ V + ISQSGETAD+L +LR K + +
Sbjct: 73 KYWIEKYAKVPCSVEIASEIRYRDNVVVDGSLFVSISQSGETADTLESLRKSKKQNYVGS 132
Query: 161 VGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISL-QTR 219
+ + N SS+ RES AG EIGVASTKA+T+Q ++L +F LV+ + + SL +
Sbjct: 133 MCICNVPNSSLVRESDIAFMTKAGVEIGVASTKAFTTQLVALAIFTLVIAKLKNSLTDQQ 192
Query: 220 RNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKEL 279
+ + LK I + L++D+E+ Q+++ +++ + +GRG Y +EGALK+KE+
Sbjct: 193 IAKYTEELKNIRALVMGALKLDTEIDQISEYFSDKEHTIFLGRGLYYPIAIEGALKLKEI 252
Query: 280 TYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEK 339
+Y+H+E +GELKHGPLAL+D +MP++ ++ D + K ++ L +V AR G+ I+ +K
Sbjct: 253 SYIHAEAYPSGELKHGPLALVDKNMPIVAVVPNDELLDKTLSNLQEVHARGGKLILFVDK 312
Query: 340 GDTETQALAT-KTLEVPHTVDCL 361
E LE+ D
Sbjct: 313 AVKERVNFDNSIVLELDAGHDFS 335
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing];
amidotransferase, ammonia channeling, glucosamine 6-
phosphate synthase; HET: F6R; 2.05A {Escherichia coli}
SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X
2vf5_X* 3ooj_A*
Length = 608
Score = 324 bits (833), Expect = e-106
Identities = 98/261 (37%), Positives = 153/261 (58%), Gaps = 1/261 (0%)
Query: 102 RQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGAL-I 160
R E L +P VE+AS+F R + V R+ + +SQSGETAD+L LR K G L
Sbjct: 311 RYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGS 370
Query: 161 VGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRR 220
+ + N GSS+ RES + NAG EIGVASTKA+T+Q L+M + + + +
Sbjct: 371 LAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSKLKGLDASIE 430
Query: 221 NEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELT 280
++I+ GL+ + +I ++L D ++ LA++ ++ L +GRG Y +EGALK+KE++
Sbjct: 431 HDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPIALEGALKLKEIS 490
Query: 281 YMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKG 340
Y+H+E AGELKHGPLALID MPVI++ + + K + + +V AR G+ V ++
Sbjct: 491 YIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQD 550
Query: 341 DTETQALATKTLEVPHTVDCL 361
+ +E+PH + +
Sbjct: 551 AGFVSSDNMHIIEMPHVEEVI 571
Score = 49.4 bits (119), Expect = 9e-07
Identities = 14/22 (63%), Positives = 21/22 (95%)
Query: 15 EIIELLIKGLKRLEYRGYDSSG 36
++ E+L++GL+RLEYRGYDS+G
Sbjct: 11 DVAEILLEGLRRLEYRGYDSAG 32
Score = 45.9 bits (110), Expect = 2e-05
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 52 MEGAFALCFKSKLFPGECVATRRGSPLLVGI-KTKTRLATDHIPILYGKATRQL--LEE 107
+ GA+ P +A R GSPL++G+ + +A+D + +L TR+ LEE
Sbjct: 152 LRGAYGTVIMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALL--PVTRRFIFLEE 208
>3knz_A Putative sugar binding protein; structural genomics, joint C
structural genomics, JCSG, protein structure initiative;
2.50A {Salmonella enterica subsp}
Length = 366
Score = 309 bits (794), Expect = e-104
Identities = 48/262 (18%), Positives = 90/262 (34%), Gaps = 9/262 (3%)
Query: 102 RQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIV 161
R ++ LPV V D + ISQ G + +L A+ + G +
Sbjct: 69 RTFMQRWCALPVDVCWPFMLDDETLARSGKALVVGISQGGGSLSTLAAMERARNVGHITA 128
Query: 162 GVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISL-QTRR 220
+ ++I R + + + G E A TK Y ++L++ AL + + L +R
Sbjct: 129 SMAGVAPATIDRAADYILTVPCGEETAGAKTKGYHCTVLNLMLLALAVAGQQQRLDGEQR 188
Query: 221 NEIIKGLKVIHEQIREVL-QMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKEL 279
++ ++ + ++ + Q A + + + L G + T EGALK+ E
Sbjct: 189 RSLLLRMEKTFNHLPALVTASQAWAQTNALALRDSADIRLTGPATLFGTVQEGALKMLET 248
Query: 280 TYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEK 339
G E HG + +IM+ + + +L I +
Sbjct: 249 LRCPVSGYEFEEFIHGIYNAFNAQSALIMLDPQPDARQDRLAQILGEWTPSIYRIGPQVE 308
Query: 340 GDTETQALATKTLEVPHTVDCL 361
+ L P D
Sbjct: 309 NNGL-------NLNFPFVNDED 323
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics,
joint center structural genomics, JCSG, protein
structure initiative; HET: MSE; 1.50A {Listeria
monocytogenes}
Length = 373
Score = 307 bits (790), Expect = e-103
Identities = 53/261 (20%), Positives = 107/261 (40%), Gaps = 8/261 (3%)
Query: 102 RQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGAL-I 160
+ +E L ++ + +E + L D+ ISQSG++ ++ AL K ++ +
Sbjct: 69 KYYIENLADVRITIEEPFNHLYYEKLSSHLDLVIGISQSGQSTSTISALERVKKEASVPV 128
Query: 161 VGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISL-QTR 219
V +T+ V S I+ + + I +G E TK +T+ ++L++ L + + +TR
Sbjct: 129 VALTSDVTSEIAEFADITLDIGSGKERVGYVTKGFTATVLTLMLTGLHFAYKTVQIDETR 188
Query: 220 RNEIIKGLKVIHEQIREVL-QMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKE 278
N I + I + + ++ ++ +E +G G TC E K E
Sbjct: 189 FNNEISAFSRAIDAIPATIAETEAFYERWQEEFATAPKFTAIGYGPTVGTCKEFETKFSE 248
Query: 279 LTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICE 338
+ S+G+ HGP ++ + + T V + + L ++ +
Sbjct: 249 TVRVPSQGLDLEAFMHGPYLEVNPQHRIFFLETASAVTER-LVLLRDYESKYTPFTYTVK 307
Query: 339 KGDTETQALATKTLEVPHTVD 359
G E +TL +P +D
Sbjct: 308 FGKGE----DDRTLVIPTDLD 324
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative; HET: MSE; 1.75A {Silicibacter pomeroyi
dss-3}
Length = 344
Score = 297 bits (764), Expect = e-100
Identities = 61/261 (23%), Positives = 102/261 (39%), Gaps = 16/261 (6%)
Query: 102 RQLLEELTELPVMVELASDFLD-RNTPVFRDDVCFFISQSGETADSLMALRYCKARGALI 160
E L LPV S +C +SQSG++ D + R GAL
Sbjct: 62 SYAAELLLGLPVASLGPSVASVYDARLRLDRALCLAVSQSGKSPDIVAMTRNAGRDGALC 121
Query: 161 VGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRR 220
V +TN S ++ S I I+AGPE+ VA+TK + + ++ +M ED
Sbjct: 122 VALTNDAASPLAGVSAHTIDIHAGPELSVAATKTFVTSAVAGLMLLADWAEDD------- 174
Query: 221 NEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELT 280
+ L + E + ++D ++ + + S+ +GRG + A E ALK KE
Sbjct: 175 -GLRAALGNLPETLAAASRID--WPEMRVAIGARPSLFTLGRGTSLAVSNEAALKFKETC 231
Query: 281 YMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKG 340
+H+E + E+ HGP+++++ PV+ D Q+ A+ +
Sbjct: 232 QLHAESYSSAEVLHGPVSIVEEGFPVLGFAAGDAAEAPLAEIADQIAAKGATVFATTGRV 291
Query: 341 DTETQALATKTLEVPHTVDCL 361
A V
Sbjct: 292 TR-----ARVLEHVRSGHALT 307
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA
protein, structural genomics, joint center for
structural G JCSG; HET: MSE CIT; 1.80A {Clostridium
difficile}
Length = 352
Score = 296 bits (761), Expect = 4e-99
Identities = 41/258 (15%), Positives = 97/258 (37%), Gaps = 5/258 (1%)
Query: 102 RQLLEELTELPVMVELASDFLDRNTPVF-RDDVCFFISQSGETADSLMALRYCKARGALI 160
+ L+ L ++ V+ + + + +SQ G + + A++ + +G I
Sbjct: 53 QPYLQNLLDIDVVKMYPFMITEDTFKFDNENTLVVGVSQGGSSYSTYNAMKLAEDKGCKI 112
Query: 161 VGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISL-QTR 219
+ + I S + +N G E A TK Y ++L++ L + ++ + +
Sbjct: 113 ASMAGCKNALIDEISDYILTVNCGEEKSGAKTKGYYCTKLNLMLLGLQIAREKGIISSEK 172
Query: 220 RNEIIKGLKVIHEQIREVLQMDSE-VQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKE 278
NE I + + V ++ + +++ +++ K + ++G Y +E ALK+ E
Sbjct: 173 YNEEINKILDAINRFEAVYKLSKQWIERNKEKLVNSKEIRIIGHSDIYGDTLEAALKLLE 232
Query: 279 LTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICE 338
+ G E HG I++ + ++ T + + + I
Sbjct: 233 TMRIPVTGYEFEEFIHGIYNAINSDSTIFILDTGK--EPRVTKMIDVLSGWTENVFAIGR 290
Query: 339 KGDTETQALATKTLEVPH 356
+ L + P+
Sbjct: 291 DVTENDKNLKIDITDNPY 308
>3hba_A Putative phosphosugar isomerase; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans
OS217}
Length = 334
Score = 294 bits (755), Expect = 2e-98
Identities = 57/248 (22%), Positives = 109/248 (43%), Gaps = 11/248 (4%)
Query: 102 RQLLEELTELPVMVELASDFLD-RNTPVFRDDVCFFISQSGETADSLMALRYCKARGALI 160
+ L E +P S T + ISQSG + D L R K GA
Sbjct: 61 KYLFEIEASIPTFAAAPSVASVYGKTLKLAGGLVIVISQSGRSPDILAQARMAKNAGAFC 120
Query: 161 VGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRR 220
V + N + I I + AG E VA+TK+Y + +L+ A ++
Sbjct: 121 VALVNDETAPIKDIVDVVIPLRAGEEKAVAATKSYLATLSALLQVAAKWTQNE------- 173
Query: 221 NEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELT 280
+++ + + + ++ + + +++ A + + K+++++GRG+ YA E ALK+KE+
Sbjct: 174 -SLVEAVNSLPQALQAAVDAEPQLR--AGSLTDVKNLVVLGRGFGYAVSKEIALKLKEVC 230
Query: 281 YMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKG 340
+H+E + E HGP+ L++ + ++ + RD Y + + V R I + +
Sbjct: 231 AIHAEAFSSAEFLHGPVTLVEKKLSILDVCIRDESYGSHVEQIANVKQRGANLIHLHQTS 290
Query: 341 DTETQALA 348
+A
Sbjct: 291 ADIHPRIA 298
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813,
glucosamine-6-phosphate deamina PSI, protein structure
initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Length = 342
Score = 275 bits (707), Expect = 4e-91
Identities = 45/261 (17%), Positives = 93/261 (35%), Gaps = 26/261 (9%)
Query: 102 RQLLEELTELPVMVELASDFLDRNTPVFR-DDVCFFISQSGETADSLMALRYCKARGALI 160
E + ++ A + + P + F S++G T + L+A K R
Sbjct: 71 SYYFERVLKIRTKAIPAGEVAFQKIPDLEERGLAFLFSRTGNTTEVLLANDVLKKRNHRT 130
Query: 161 VGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRR 220
+G+T S +++ES + E + TK+++ +SL+ A +
Sbjct: 131 IGITIEEESRLAKESDLPLVF-PVREEAIVMTKSFSMILLSLMFLADKIA------GNST 183
Query: 221 NEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELT 280
+ + E ++ ++ ++ E + +G + +E ALK E++
Sbjct: 184 ERFSELVGYSPEFFDISWKVIEKI-----DLKEHDHFVFLGMSEFFGVSLESALKCIEMS 238
Query: 281 YMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICEKG 340
SE E +HGP AL+ V M + + ++ + + + E G
Sbjct: 239 LTFSEAYSTLEYRHGPKALVKKGTLVFMQ-KVSGMDEQEKRLRKELESLGATVLEVGEGG 297
Query: 341 DTETQALATKTLEVPHTVDCL 361
D +P + D
Sbjct: 298 D------------IPVSNDWK 306
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Length = 347
Score = 274 bits (702), Expect = 2e-90
Identities = 51/260 (19%), Positives = 107/260 (41%), Gaps = 14/260 (5%)
Query: 102 RQLLE-ELTELPVMVELASDFLDRN-TPVFRDDVCFFISQSGETADSLMALRYCKARGAL 159
+ L+ E ++L V +++F+ + ++ V SQ G TA+++ A R + +GA
Sbjct: 59 KYFLDCEASKLAVGYITSNEFVHATPKALGKNSVVILASQQGNTAETVAAARVAREKGAA 118
Query: 160 IVGVTNTVGSSISRESHCGIHINAGP---EIGVASTKAYTSQFISLVMFALVMCEDRISL 216
+G+ + + S I + A KA S +++L + A +
Sbjct: 119 TIGLVYQPDTPLCEYSDYIIEYQWARYPETVDPAQQKAAYSLWLALEILAQTEGYAQY-- 176
Query: 217 QTRRNEIIKGLKVIHEQIREVL-QMDSEVQQLAKEMYEQKSMLLMGRGYNYAT-CMEGAL 274
+E++ + + Q+ + Q+ A E ++K + +MG G ++ E
Sbjct: 177 ----DELVSAFGRFSDVVHGAQRQVQEDAQRFAAEWKDEKVVYMMGSGPSFGAAHQESIC 232
Query: 275 KIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPI 334
+ E+ +++S I +GE HGP + + P I++ + A+ + G+
Sbjct: 233 ILLEMQWINSASIHSGEYFHGPFEITEPGTPFILLQSSGRTRPLDDRAIRFIERYQGKLQ 292
Query: 335 VICEKGDTETQALATKTLEV 354
+I Q L+T E
Sbjct: 293 LIDAD-KLGIQDLSTDVGEY 311
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative
phosphosugar isomerase, structural genomics, joint for
structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus
subtilis}
Length = 329
Score = 272 bits (699), Expect = 3e-90
Identities = 51/245 (20%), Positives = 104/245 (42%), Gaps = 12/245 (4%)
Query: 102 RQLLEEL-TELPVMVELASDFLDRN-TPVFRDDVCFFISQSGETADSLMALRYCKARGAL 159
+ + + + + A++F+ RN + + S SG T +++ A + + +GAL
Sbjct: 44 KYVFDRESKSINSDLYSANEFIQRNPVQLGEKSLVILCSHSGNTPETVKAAAFARGKGAL 103
Query: 160 IVGVTNTVGSSISRESHCGIHINAGPE-IGVASTKAYTSQFISLVMFALVMCEDRISLQT 218
+ +T S +++E+ + G E + + + Q + + L T
Sbjct: 104 TIAMTFKPESPLAQEAQYVAQYDWGDEALAINTNYGVLYQIVFGTLQVLEN-------NT 156
Query: 219 RRNEIIKGLKVIHEQIREVLQMDSE-VQQLAKEMYEQKSMLLMGRGYNYATCMEGAL-KI 276
+ + I+GL + + L+ +++ +Q AK ++ + M G NY ++ +
Sbjct: 157 KFEQAIEGLDQLQAVYEKALKQEADNAKQFAKAHEKESIIYTMASGANYGVAYSYSICIL 216
Query: 277 KELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVI 336
E+ ++HS I AGE HGP +ID S+P I++L D AL + V+
Sbjct: 217 MEMQWIHSHAIHAGEYFHGPFEIIDESVPFIILLGLDETRPLEERALTFSKKYGKKLTVL 276
Query: 337 CEKGD 341
Sbjct: 277 DAASY 281
>2e5f_A Hypothetical protein PH0510; structural genomics, sugar binding
protein, NPPSFA, national on protein structural and
functional analyses; 1.35A {Pyrococcus horikoshii} PDB:
2dec_A* 2df8_A 2cb0_A*
Length = 325
Score = 268 bits (688), Expect = 2e-88
Identities = 49/267 (18%), Positives = 109/267 (40%), Gaps = 26/267 (9%)
Query: 98 GKATRQLLEELTELPVMVELASDFLDRN--TPVFRDDVCFFISQSGETADSLMALRYCKA 155
K + L + + S+FL P+ ++ IS+SGET + L+AL
Sbjct: 46 SKLLAMVTNMHGGLGIALP-CSEFLYSKETYPIGEVELAVGISRSGETTEILLALEKINV 104
Query: 156 RGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRIS 215
+ I T SS++R + + A E V T ++TS + + +
Sbjct: 105 KKLGI----TTRESSLTRMCDYSLVVPAIEE-SVVMTHSFTSFYFAYLQLLRYSYGLPPL 159
Query: 216 LQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALK 275
I + + L+ + ++++ + ++ ++++ +G G Y +E +LK
Sbjct: 160 NAGE----------ISKATEKSLEYERYIREIVES-FDFQNIIFLGSGLLYPVALEASLK 208
Query: 276 IKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQ-VIARDGRPI 334
+KE++ SE E++HG A+ D V++++ + + L++ + + +
Sbjct: 209 MKEMSIFWSEAYPTFEVRHGFKAIADEKTLVVLMVEEPFEWHE---KLVKEFKNQGAKVL 265
Query: 335 VICEKGDTETQALATKTLEVPHTVDCL 361
VI ++ ++E+P
Sbjct: 266 VI---SNSPQDLGQDYSIELPRLSKDA 289
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural
genomics, joint center for structural genomics; HET:
MSE; 1.23A {Salmonella typhimurium}
Length = 355
Score = 262 bits (672), Expect = 1e-85
Identities = 40/257 (15%), Positives = 101/257 (39%), Gaps = 13/257 (5%)
Query: 102 RQLLEELTELPVMVELASDFLDRNTPVF-RDDVCFFISQSGETADSLMALRYCKARGALI 160
+ +ELT LPV VE A++ + + +D V +S+SG+T +S+ +CKA+G +
Sbjct: 73 NEFAKELTTLPVYVEQAAELIHKGNKRLNKDSVVITLSKSGDTKESVAIAEWCKAQGIRV 132
Query: 161 VGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRR 220
V +T S +++ A I + +++ L +
Sbjct: 133 VAITKNADSPLAQA--------ATWHIPMRHKNGVEYEYMLLYWLFFRVLSRNNEF-ASY 183
Query: 221 NEIIKGLKVIHEQIREV-LQMDSEVQQLAKEMYEQKSMLLMGRGYNYA-TCMEGALKIKE 278
+ L+++ + + + D + +A + M+ +G + + ++E
Sbjct: 184 DRFASQLEILPANLLKAKQKFDPQADAIASRYHNSDYMMWVGGAEMWGEVYLFSMCILEE 243
Query: 279 LTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVICE 338
+ + + + + E HG L L++ +P+I++ + + ++ +V+ +
Sbjct: 244 MQWKRTRPVSSAEFFHGALELLEKDVPLILVKGEGKCR-ALDERVERFASKITDNLVVID 302
Query: 339 KGDTETQALATKTLEVP 355
+ + +
Sbjct: 303 PKAYALDGIDDEFRWIM 319
>3odp_A Putative tagatose-6-phosphate ketose/aldose isome; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: MSE PG4; 2.35A
{Clostridium novyi}
Length = 393
Score = 224 bits (573), Expect = 2e-70
Identities = 44/278 (15%), Positives = 104/278 (37%), Gaps = 30/278 (10%)
Query: 98 GKATRQLLEELTELPVMVELASDFLDRNTPVFRD----DVCFFISQSGETADSLMALRYC 153
G + L + + +D + + + ++SG + +S A+
Sbjct: 73 GNSVVSYLNAKENIKIEAIATTDIVSHP-FYYLKKDEPTLLISCARSGNSPESTAAVTLA 131
Query: 154 KARGALI--VGVTNTVGSSISRESHCGIHI------NAGPEIGVASTKAYTSQFISLVMF 205
+ I + +T ++ + + + G A T ++++ +S ++
Sbjct: 132 EKIVDDISHLIITCNSEGKLALHAKRNYNSFLLLMPEESNDKGFAMTGSFSTMLLSCLLI 191
Query: 206 ALVMCEDRISLQTRRNEIIKGLKVIHEQIREVLQMDSE-VQQLAKEMYEQKSMLLMGRGY 264
+ I K ++ I Q +VL + E ++++ E + K + +G
Sbjct: 192 FN---------LDKLESIGKQIESISMQGEKVLVNNVELMKKIVGEKF--KRTVYLGAAN 240
Query: 265 NYATCMEGALKIKELTYMHSEGIMAGEL--KHGPLALIDNSMPVIMILTRDPVYVKCMNA 322
+ E ALK+ ELT + L +HGP ++ID+ +++ + D +
Sbjct: 241 AFGLAKESALKVLELTAGKIATLYDTPLGFRHGPKSIIDDETLIVIFFSNDTYAREYEYD 300
Query: 323 LLQ-VIARDGRPIVI--CEKGDTETQALATKTLEVPHT 357
LL+ V +++G V+ E D + + + +
Sbjct: 301 LLKEVYSQNGNHKVLAISEYEDKLIEDNSDYFIAINKE 338
>3i0z_A Putative tagatose-6-phosphate ketose/aldose isome; NP_344614.1,
putative putative tagatose-6-phosphate ketose/A
isomerase; HET: MSE; 1.70A {Streptococcus pneumoniae
TIGR4}
Length = 389
Score = 220 bits (564), Expect = 4e-69
Identities = 47/285 (16%), Positives = 100/285 (35%), Gaps = 34/285 (11%)
Query: 98 GKATRQLLEELTE--------LPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMA 149
G +E+ + + +A+ V V ++SG + +SL
Sbjct: 71 GDTLLPYFKEVYDERKWNFNAIATTDIVANPATYLKKDV--ATVLVSFARSGNSPESLAT 128
Query: 150 LRYCKARGALI--VGVTNTVGSSISRESHCGIH------INAGPEIGVASTKAYTSQFIS 201
+ K+ + V +T ++ ++H + G A T ++TS ++
Sbjct: 129 VDLAKSLVDELYQVTITCAADGKLALQAHGDDRNLLLLQPAVSNDAGFAMTSSFTSMMLT 188
Query: 202 LVMFALVMCEDRISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMG 261
++ T + +V+ R+VL +V++L + ++ +G
Sbjct: 189 TLLVFD---------PTEFAVKSERFEVVSSLARKVLDKAEDVKELVDLDF--NRVIYLG 237
Query: 262 RGYNYATCMEGALKIKELTYMHSEGIM--AGELKHGPLALIDNSMPVIMILTRDPVYVKC 319
G + E LKI ELT + +HGP +LI+++ V++ T K
Sbjct: 238 AGPFFGLAHEAQLKILELTAGQVATMYESPVGFRHGPKSLINDNTVVLVFGTTTDYTRKY 297
Query: 320 MNALLQVIARD---GRPIVICEKGDTETQALATKTLEVPHTVDCL 361
L++ +A D R +++ ++ D
Sbjct: 298 DLDLVREVAGDQIARRVVLLSDQAFGLENVKEVALGCGGVLNDIY 342
>3c3j_A Putative tagatose-6-phosphate ketose/aldose isome;
tagatose-6-phosphate ketose/aldose isomerase, structural
GEN PSI, MCSG; 1.80A {Escherichia coli}
Length = 384
Score = 214 bits (546), Expect = 2e-66
Identities = 39/271 (14%), Positives = 82/271 (30%), Gaps = 26/271 (9%)
Query: 102 RQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIV 161
+ + +P + + N + +SG + +S+ A+
Sbjct: 77 SHTGKNFSAVPTTDLVTNPMDYLNPA--HPLLLISFGRSGNSPESVAAVELANQFVPECY 134
Query: 162 GVT---NTVGSSISRESHCGIHI-----NAGPEIGVASTKAYTSQFISLVMFALVMCEDR 213
+ N G+ + + G A T + T+ S +
Sbjct: 135 HLPITCNEAGALYQNAINSDNAFALLMPAETHDRGFAMTSSITTMMASCLAVFA------ 188
Query: 214 ISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGA 273
+ + + ++ + +L + + K ++ +G G E A
Sbjct: 189 -----PETINSQTFRDVADRCQAILTSLGDFSEGVFGYAPWKRIVYLGSGGLQGAARESA 243
Query: 274 LKIKELTYMHSEGIM--AGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDG 331
LK+ ELT +HGP +L+D+ V++ ++ P + LL + RD
Sbjct: 244 LKVLELTAGKLAAFYDSPTGFRHGPKSLVDDETLVVVFVSSHPYTRQYDLDLLAELRRDN 303
Query: 332 RP---IVICEKGDTETQALATKTLEVPHTVD 359
+ I I + A L
Sbjct: 304 QAMRVIAIAAESSDIVAAGPHIILPPSRHFI 334
>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon,
hyperthermophIle, PGI family; 1.16A {Pyrobaculum
aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*
Length = 302
Score = 58.8 bits (141), Expect = 6e-10
Identities = 25/212 (11%), Positives = 69/212 (32%), Gaps = 24/212 (11%)
Query: 129 FRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIG 188
RD + +S SG T ++L + Y K R V +T G +++ + +
Sbjct: 78 ARDGLLIAVSYSGNTIETLYTVEYAKRRRIPAVAITT--GGRLAQMGVPTVIVPKASAPR 135
Query: 189 VASTKAYTSQFISLVMFALVMCEDRISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLA 248
A + T+ + + + L+ +I L ++ ++ + ++ +A
Sbjct: 136 AALPQLLTAALHVVAKVYGIDVKIPEGLEPPNEALIHKLVEEFQKRPTIIAAE-SMRGVA 194
Query: 249 KEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIM 308
+ + E + + E H + + ++ +
Sbjct: 195 YRVKNE---------------------FNENAKIEPSVEILPEAHHNWIEGSERAVVALT 233
Query: 309 ILTRDPVYVKCMNALLQVIARDGRPIVICEKG 340
+ + + A ++++ + + KG
Sbjct: 234 SPHIPKEHQERVKATVEIVGGSIYAVEMHPKG 265
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3
PDB: 1viv_A
Length = 186
Score = 51.2 bits (123), Expect = 6e-08
Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 12/109 (11%)
Query: 130 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE--- 186
D+ S SGET + K+ ++ +T SSI +++ I + P+
Sbjct: 79 EGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSPKDQS 138
Query: 187 IGVASTKAYT-SQF--ISLVMF-ALVMCEDRISLQTRRNEIIKGLKVIH 231
G T S F L+ + A+++ L ++ + + H
Sbjct: 139 NGSYKTIQPMGSLFEQTLLLFYDAVILK-----LMEKKGLDSETMFTHH 182
>3fxa_A SIS domain protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Length = 201
Score = 49.5 bits (119), Expect = 3e-07
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 130 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE--- 186
++D+ IS+ G T + L + CK +G+ ++GVT S I++E+ ++ E
Sbjct: 92 KEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDP 151
Query: 187 IGVASTKAYTSQFISLVMF-ALVMC 210
+ +T S + F A+++C
Sbjct: 152 FNMLAT---ASTMAVIASFDAVIVC 173
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase
[isomerizing]; complex (transferase/inhibitor),
glutamine amidotransferase; HET: GLU; 1.80A
{Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Length = 240
Score = 49.8 bits (120), Expect = 4e-07
Identities = 14/22 (63%), Positives = 21/22 (95%)
Query: 15 EIIELLIKGLKRLEYRGYDSSG 36
++ E+L++GL+RLEYRGYDS+G
Sbjct: 11 DVAEILLEGLRRLEYRGYDSAG 32
Score = 45.2 bits (108), Expect = 1e-05
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 52 MEGAFALCFKSKLFPGECVATRRGSPLLVGI-KTKTRLATDHIPILYGKATRQL--LEE 107
+ GA+ P +A R GSPL++G+ + +A+D + +L TR+ LEE
Sbjct: 152 LRGAYGTVIMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALL--PVTRRFIFLEE 208
>3sho_A Transcriptional regulator, RPIR family; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
1.80A {Sphaerobacter thermophilus}
Length = 187
Score = 48.4 bits (116), Expect = 6e-07
Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 13/108 (12%)
Query: 131 DDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVA 190
D+ +S D++ AL RG + +T++ S +R + +
Sbjct: 88 TDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAATRGVGHSL 147
Query: 191 STKAYTSQFISLV--MFALVMCEDRISLQTRRNEIIKGLKVIHEQIRE 236
S I++V + A + + L+ + RE
Sbjct: 148 S---PVGL-IAVVNLLLAEIA-------VREPERALAVLREVDRLYRE 184
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide
biogenesis; 2.60A {Escherichia coli}
Length = 183
Score = 46.8 bits (112), Expect = 2e-06
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 130 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE--- 186
DV IS SGE+++ + K ++ +T SS++R + + + E
Sbjct: 96 PQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACP 155
Query: 187 IGVASTKAYTSQFISLVM 204
+G+A T +S +LVM
Sbjct: 156 LGLAPT---SSTTATLVM 170
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 7e-06
Identities = 66/439 (15%), Positives = 122/439 (27%), Gaps = 134/439 (30%)
Query: 1 IFAYLN---YLTPKTRLEIIELLIKGLKRLEYRGYDSSGN-----NELEGDHLARHIAIM 52
IF +LN +P+T LE+++ L+ + D S N + ++ L R +
Sbjct: 184 IF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKSK 241
Query: 53 EGAFAL----------CFKSKLFPGEC---VATR-RGSPLLVGIKTKTRLATDHIPILYG 98
L + + F C + TR + + T T ++ DH +
Sbjct: 242 PYENCLLVLLNVQNAKAWNA--FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 99 KA-TRQLL-----EELTELP------------VMVELASDFLDRNTP---VFRDDVCFFI 137
+ LL +LP ++ E D L V D + I
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 138 SQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTS 197
S + + L S+ S HI +
Sbjct: 360 ESSLNVLEPAEYRKMFD---RL----------SVFPPS---AHI--------------PT 389
Query: 198 QFISL---------VMFALVMCEDRISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLA 248
+SL VM + SL ++ + + I E+ L
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPK--ESTISIPSIYLELKVKLENEYALH 446
Query: 249 KEMYEQKSMLLMGRGYNY--ATCMEGALKIKELTYM------HSEGIMAGE--------- 291
+ + + YN + + Y H + I E
Sbjct: 447 RSIVDH---------YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 292 ---------LKHGPLALIDNS--MPVIM--------ILTRDPVYVKCMNALLQVIARDGR 332
++H A + + + I DP Y + +NA+L + +
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 333 PIVICEKGDTETQALATKT 351
++ + D AL +
Sbjct: 558 NLICSKYTDLLRIALMAED 576
Score = 47.2 bits (111), Expect = 7e-06
Identities = 41/362 (11%), Positives = 98/362 (27%), Gaps = 104/362 (28%)
Query: 12 TRLEIIELLIKGLKRLEYRGYDSSGNNELEGDHLARHIAIMEGAFALCFKSKLFPGEC-- 69
+RL+ L + L L + N ++G + G K+ + C
Sbjct: 132 SRLQPYLKLRQALLEL-----RPAKNVLIDG---------VLG----SGKTWVALDVCLS 173
Query: 70 --VATRRGSP---LLVGIKTKTRLATDHIPILYGKATR---QLLEELTELPVMVELASDF 121
V + L + + + L + + + + + +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 122 LDR--NTPVFR------DDVCFFISQSGETADSLMALRYCKARGALI----VGVTNTVGS 169
L R + + +V + + ++ L CK L+ VT+ + +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQ-----NAKAWNA-FNLS-CK---ILLTTRFKQVTDFLSA 283
Query: 170 SISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRRNEIIKG--- 226
+ + H + T + + Q E++
Sbjct: 284 ATTTHI-SLDHHSMT------LTPDE-----VKSLLLKYL---DCRPQDLPREVLTTNPR 328
Query: 227 -LKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSE 285
L +I E IR+ + ++ + ++ + + L+ E M
Sbjct: 329 RLSIIAESIRD---GLATWDNWKHVNCDKLTTII-------ESSLN-VLEPAEYRKMFDR 377
Query: 286 GIMAGELKHGPLALIDNSMP----VIMIL-----TRDP--VYVKCMNALLQVIARDGRPI 334
L++ S ++ ++ D V K L + + +
Sbjct: 378 -----------LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKES 424
Query: 335 VI 336
I
Sbjct: 425 TI 426
Score = 31.4 bits (70), Expect = 0.61
Identities = 21/141 (14%), Positives = 42/141 (29%), Gaps = 39/141 (27%)
Query: 25 KRL--EY---RGYDSSGNNELEGD-----HLARHIAIMEGA-----FALCF------KSK 63
+ + Y + +DS D H+ H+ +E F + F + K
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 64 LFPGECVATRRGS--PLLVGIKTKTRLATDHIPI-----------LYGKATRQLLEELTE 110
+ GS L +K D+ P L + + T+
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 111 LPVMVELASDFLDRNTPVFRD 131
L + +A + + +F +
Sbjct: 567 L---LRIA--LMAEDEAIFEE 582
>3etn_A Putative phosphosugar isomerase involved in capsu formation;
YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis
nctc 9343}
Length = 220
Score = 44.2 bits (105), Expect = 2e-05
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 130 RDDVCFFISQSGETADSLMALRYCK--ARGALIVGVTNTVGSSISRESHCGIHINAGPE- 186
+D+ IS SG+T + + + G + +T S ++ ES + E
Sbjct: 106 ENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLSTGHPAEV 165
Query: 187 --IGVASTKAYTSQFISLVMF-ALVMC 210
+G+ T TS + V+ LV+
Sbjct: 166 CTLGMTPT---TSTTVMTVIGDILVVQ 189
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function;
1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Length = 200
Score = 43.5 bits (103), Expect = 3e-05
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 130 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINA----GP 185
DV IS SGET + + K G+ +V VT SS+++ + + +
Sbjct: 89 DQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGKMKQER 148
Query: 186 EIGVASTKAYTSQF--ISLVMF-ALVMC 210
+ ++ + F +++ ALV
Sbjct: 149 DEILSQLAPLGTMFELTAMIFLDALVAE 176
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 7e-05
Identities = 67/415 (16%), Positives = 122/415 (29%), Gaps = 155/415 (37%)
Query: 1 IF-------AYLN-----YLTPKTRLE-IIELLIKGLKRLE----------YRGYD---- 33
IF Y Y T + +I+ + L L +G +
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 34 -SSGNNELEGDHLARHIAI---MEGAFAL------CFKSKLFPGE-----CVATRRGSPL 78
+ +N + D+L I I + G L PGE AT L
Sbjct: 219 LENPSNTPDKDYLL-SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 79 LVGI---KTKT-----RLATDHIPILY--GKATRQLLEELTELPVMVELASDFLDRNTPV 128
+ + +T + I +L+ G + + P ++E D L+
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE---DSLEN---- 330
Query: 129 FRDDVCFFISQSGETADSLM-ALRYCKARGAL--IVGVTNTVGSSISRESHCGIHI---N 182
E S M ++ + + V TN+ + + I N
Sbjct: 331 ------------NEGVPSPMLSISNLT-QEQVQDYVNKTNS---HLPAGKQ--VEISLVN 372
Query: 183 -------AGP-------EIGVASTKA-----------------YTSQFISLVMFA----- 206
+GP + + KA ++++F L + +
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF--LPVASPFHSH 430
Query: 207 -LVMCEDRISLQTRRNEI-IKG--LK--VIH----EQIREVLQMDSE--VQQLAKE---- 250
LV D I+ +N + ++ V +R + SE V + +
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW 490
Query: 251 ----MYEQKSMLLMGRGYNYATCMEGALKIKELTYMHSEG-----IMAGELKHGP 296
++ +L G G GA + LT+ + +G I+AG L P
Sbjct: 491 ETTTQFKATHILDFGPG--------GASGLGVLTHRNKDGTGVRVIVAGTLDINP 537
Score = 40.4 bits (94), Expect = 0.001
Identities = 69/456 (15%), Positives = 128/456 (28%), Gaps = 173/456 (37%)
Query: 4 YLNYLT----PKTRLEIIELLIKGLKRLEYRGYDSSGNNELEGD--H-LARHIAIMEGAF 56
+L Y++ P + ++L L E Y LEG+ H LA +
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFE-NCY-------LEGNDIHALAAKLLQENDTT 115
Query: 57 ALC--------FKSKLFPGECVATRRGSPLLVGIKT-KTRLATDHIPILYGK--ATRQLL 105
+ +++ + S L + +L ++G T
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA-----IFGGQGNTDDYF 170
Query: 106 EELTEL----------------PVMVELASDFLDRNTPVFRD--DVCFFISQSGETADS- 146
EEL +L + EL LD VF ++ ++ T D
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE-KVFTQGLNILEWLENPSNTPDKD 229
Query: 147 -------------LMAL-RY---CKARG-------ALIVGVTNTVGSSI----------S 172
++ L Y K G + + G T + S
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT-GHSQGLVTAVAIAETDS 288
Query: 173 RESHCGIHINAGPE------IGVASTKAYTSQFI--SLV-------------MFALVMCE 211
ES ++ IGV +AY + + S++ M ++
Sbjct: 289 WES---FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 212 D--------------------RISLQ-TRRNEIIKG----LKVIHEQIREVLQMDSEVQQ 246
ISL +N ++ G L ++ +R+ + S + Q
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA-KAPSGLDQ 404
Query: 247 LAKEMYEQK---------------SMLLMGRGYNYATCMEGAL-KIKELTYMHSEGIMAG 290
E+K S LL A I + ++ A
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPFHSHLL-----------VPASDLINKDLVKNNVSFNAK 453
Query: 291 ELK----H---GP-LALIDNSMP--VIMILTRDPVY 316
+++ G L ++ S+ ++ + R PV
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Score = 29.2 bits (65), Expect = 2.4
Identities = 46/327 (14%), Positives = 87/327 (26%), Gaps = 109/327 (33%)
Query: 92 HIP-ILYGKATRQLLEE-LTELPV-------------MVELASDFL-------DRNTPVF 129
+P + A+ QL E+ LP EL FL + +
Sbjct: 21 LVPTASFFIAS-QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 130 RDDV------CF------------FISQSGETADSLMALR------YCKARGALIVGVTN 165
D V F ++ + D+ + Y AR
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 166 TVGSSISRESHCGIHINAGPEIGVASTKAYTSQF----ISLVMFALVMCEDRISLQTRRN 221
S++ R + G + + F + F E R L +
Sbjct: 140 KSNSALFR------AVGEG------NAQLVA-IFGGQGNTDDYFE----ELR-DLYQTYH 181
Query: 222 EIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKIKELTY 281
++ L I + E L +L + + + + +G N +E + Y
Sbjct: 182 VLVGDL--I-KFSAETL------SELIRTTLDAEKVF--TQGLNILEWLENPSNTPDKDY 230
Query: 282 MHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKC---------MNALLQVIARDGR 332
L P+ S P+I ++ V + + L+ +
Sbjct: 231 ----------LLSIPI-----SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 333 PIV---ICEKGDTETQ--ALATKTLEV 354
+V + D+ K + V
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITV 302
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar,
3-hexulose-6-phosphate isomerase structural genomics;
HET: CME CIT; 2.00A {Methanocaldococcus jannaschii}
SCOP: c.80.1.3
Length = 180
Score = 41.6 bits (98), Expect = 1e-04
Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 17/107 (15%)
Query: 130 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE--- 186
+DD+ IS SG T L + K I+ + ++ + I +
Sbjct: 82 KDDLLILISGSGRTESVLTVAKKAKNINNNIIAIV-CECGNVVEFADLTIPLEVKKSKYL 140
Query: 187 -IGVASTKAYTSQFISLVMF-ALVMCEDRISLQTRRNEIIKGLKVIH 231
+G + +L+ ++ + R N + H
Sbjct: 141 PMGTTFEET------ALIFLDLVIAE-----IMKRLNLDESEIIKRH 176
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA)
sandwich, structural genomics, J center for structural
genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans
c-125}
Length = 243
Score = 42.1 bits (98), Expect = 1e-04
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 9/77 (11%)
Query: 124 RNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESH------- 176
+ V DV IS SG + + GA ++ +T+ S H
Sbjct: 102 KLHQVTNKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLY 161
Query: 177 --CGIHINAGPEIGVAS 191
+ ++ G +G A
Sbjct: 162 EYADVVLDNGAPVGDAG 178
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A
{Escherichia coli} PDB: 2i22_A 1x94_A
Length = 212
Score = 33.1 bits (76), Expect = 0.096
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 132 DVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINA 183
DV IS SG +A+ + A+ + +G ++ +T G ++ + I +
Sbjct: 133 DVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPH 184
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.10
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 13/38 (34%)
Query: 317 VKCMNALLQVIARDGRPIVICEKGDTETQALATK-TLE 353
+K + A L++ A D P ALA K T+E
Sbjct: 22 LKKLQASLKLYADDSAP------------ALAIKATME 47
Score = 28.4 bits (62), Expect = 2.4
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 83 KTKTRL---ATDHIPILYGKATRQLLE 106
K + L A D P L KAT +E
Sbjct: 24 KLQASLKLYADDSAPALAIKAT---ME 47
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A
{Burkholderia pseudomallei} PDB: 2x3y_A
Length = 198
Score = 32.7 bits (75), Expect = 0.12
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 132 DVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINA 183
DV S SG++ + L A R KA+G VG T G + + + +
Sbjct: 118 DVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPS 169
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis,
structural genomics, NYSGXRC, LPC1_camje, PSI, protein
structure initiative; 2.10A {Campylobacter jejuni} SCOP:
c.80.1.3
Length = 188
Score = 32.7 bits (75), Expect = 0.12
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 131 DDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINA 183
DV IS SG++ + L AL+ K L +G++ G +++ + + +
Sbjct: 111 KDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPS 163
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide
bonding, putative phosphosugar BIND protein, DNAA
binding protein; 1.85A {Escherichia coli}
Length = 196
Score = 30.0 bits (68), Expect = 0.75
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 132 DVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSIS 172
DV IS G + D + A+ R IV +T G ++
Sbjct: 111 DVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELA 151
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A
{Francisella tularensis subsp}
Length = 201
Score = 30.0 bits (68), Expect = 0.94
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 132 DVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSIS 172
D+ I+ SG++ + L A+ ++ +T G ++
Sbjct: 116 DILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGALQ 156
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural
genomics, SIS domain, A/B protein, lipopolysaccharide
biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas
aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Length = 199
Score = 29.6 bits (67), Expect = 1.1
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 132 DVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSIS 172
DV IS SG +A+ + A++ R L+V +T G ++
Sbjct: 115 DVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMA 155
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 2.1
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 6/78 (7%)
Query: 147 LMALRYCKARGALIVGVTNTVGSSISRESHCGIHINA-GPEIGVASTKAYTSQFISLVMF 205
+M G I G+ ++ I + P G+ +T +
Sbjct: 1188 IMQADLALKMGVPIYGIVAMAATATD-----KIGRSVPAPGKGILTTAREHHSSVKYASP 1242
Query: 206 ALVMCEDRISLQTRRNEI 223
L M + L TR +I
Sbjct: 1243 NLNMKYRKRQLVTREAQI 1260
>1w2q_A Conglutin, ARA H 6; allergen, allergene; NMR {Arachis hypogaea}
Length = 127
Score = 26.8 bits (58), Expect = 6.3
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 210 CEDRISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEM 251
C++ ++ + + + L+ I E + LQ VQQ +E+
Sbjct: 61 CDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKREL 102
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar
methabolism, structural genomics, PSI, protein structure
initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10
c.55.1.10
Length = 289
Score = 27.5 bits (62), Expect = 6.5
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 75 GSPLLVGIKTKTRLATDHIPILYGKATRQLLEELTELPVMVE 116
S ++ + L ++ L + LE+LT LP +
Sbjct: 62 ASTGIIRDGSLLALNPHNLGGLLHFPLVKTLEQLTNLPTIAI 103
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 27.0 bits (60), Expect = 9.1
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 91 DHIPIL-YGKATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMA 149
H+ I + ++T + L EL V V LA D + F+ L
Sbjct: 116 RHVVICGWSESTLECLRELRGSEVFV-LAED--ENVRKKVLRSGANFVHGDPTRVSDLEK 172
Query: 150 LRYCKARGALIV 161
AR ++
Sbjct: 173 ANVRGARAVIVD 184
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.395
Gapped
Lambda K H
0.267 0.0794 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,321,212
Number of extensions: 321306
Number of successful extensions: 978
Number of sequences better than 10.0: 1
Number of HSP's gapped: 898
Number of HSP's successfully gapped: 58
Length of query: 361
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 266
Effective length of database: 4,049,298
Effective search space: 1077113268
Effective search space used: 1077113268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)