RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1915
(361 letters)
>d1moqa_ c.80.1.1 (A:) "Isomerase domain" of glucosamine 6-phosphate
synthase (GLMS) {Escherichia coli [TaxId: 562]}
Length = 366
Score = 210 bits (534), Expect = 1e-65
Identities = 99/265 (37%), Positives = 154/265 (58%), Gaps = 1/265 (0%)
Query: 98 GKATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARG 157
G +R E L +P VE+AS+F R + V R+ + +SQSGETAD+L LR K G
Sbjct: 65 GMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELG 124
Query: 158 AL-IVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISL 216
L + + N GSS+ RES + NAG EIGVASTKA+T+Q L+M + +
Sbjct: 125 YLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSRLKGLD 184
Query: 217 QTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKI 276
+ ++I+ GL+ + +I ++L D ++ LA++ ++ L +GRG Y +EGALK+
Sbjct: 185 ASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPIALEGALKL 244
Query: 277 KELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVI 336
KE++Y+H+E AGELKHGPLALID MPVI++ + + K + + +V AR G+ V
Sbjct: 245 KEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVF 304
Query: 337 CEKGDTETQALATKTLEVPHTVDCL 361
++ + +E+PH + +
Sbjct: 305 ADQDAGFVSSDNMHIIEMPHVEEVI 329
>d1x9ia_ c.80.1.1 (A:) Glucose-6-phosphate isomerase, conjectural
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 300
Score = 91.1 bits (225), Expect = 2e-21
Identities = 30/244 (12%), Positives = 71/244 (29%), Gaps = 31/244 (12%)
Query: 98 GKATRQLLEEL-TELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKAR 156
R E+ V+ R+ + +S SG T ++L + Y K R
Sbjct: 51 ADLIRDFSLTWNWEVEVIAVKDYFLKARD------GLLIAVSYSGNTIETLYTVEYAKRR 104
Query: 157 GALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISL 216
V +T G +++ + + A + T+
Sbjct: 105 RIPAVAITT--GGRLAQMGVPTVIVPKASAPRAALPQLLTAAL----------------- 145
Query: 217 QTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKI 276
++ + I +I E L+ +E QK ++ +
Sbjct: 146 -----HVVAKVYGIDVKIPEGLEPPNEALIHKLVEEFQKRPTIIAAESMRGVAYRVKNEF 200
Query: 277 KELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVI 336
E + + E H + + ++ + + + + A ++++ + +
Sbjct: 201 NENAKIEPSVEILPEAHHNWIEGSERAVVALTSPHIPKEHQERVKATVEIVGGSIYAVEM 260
Query: 337 CEKG 340
KG
Sbjct: 261 HPKG 264
>d1j5xa_ c.80.1.1 (A:) Hypothetical protein TM0813 {Thermotoga
maritima [TaxId: 2336]}
Length = 329
Score = 87.4 bits (215), Expect = 5e-20
Identities = 47/265 (17%), Positives = 92/265 (34%), Gaps = 26/265 (9%)
Query: 98 GKATRQLLEELTELPVMVELASDFLDRNTPVFR-DDVCFFISQSGETADSLMALRYCKAR 156
E + ++ A + + P + F S++G T + L+A K R
Sbjct: 54 ALTISYYFERVLKIRTKAIPAGEVAFQKIPDLEERGLAFLFSRTGNTTEVLLANDVLKKR 113
Query: 157 GALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISL 216
+G+T S +++ES + E V TK+++ +SL+ A + +
Sbjct: 114 NHRTIGITIEEESRLAKESDLPLVFPVREEAIVM-TKSFSMILLSLMFLADKIAGNSTER 172
Query: 217 QTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGYNYATCMEGALKI 276
+ I ++ E ++ E + +G + +E ALK
Sbjct: 173 FSELVGYSPEFFDISWKVIEK-----------IDLKEHDHFVFLGMSEFFGVSLESALKC 221
Query: 277 KELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIARDGRPIVI 336
E++ SE E +HGP AL+ V M + + ++ + + +
Sbjct: 222 IEMSLTFSEAYSTLEYRHGPKALVKKGTLVFMQ-KVSGMDEQEKRLRKELESLGATVLEV 280
Query: 337 CEKGDTETQALATKTLEVPHTVDCL 361
E GD +P + D
Sbjct: 281 GEGGD------------IPVSNDWK 293
>d1nria_ c.80.1.3 (A:) Hypothetical protein HI0754 {Haemophilus
influenzae [TaxId: 727]}
Length = 248
Score = 57.1 bits (137), Expect = 5e-10
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 128 VFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE- 186
++DV I+ SG T + L+Y K+ GAL + + + S ++ + I GPE
Sbjct: 127 FSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIETIVGPEI 186
Query: 187 -IGVASTKAYTSQFISLVMFALVMC 210
G + K+ T+Q + L M
Sbjct: 187 LTGSSRLKSGTAQKMVLNMLTTASM 211
>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 249
Score = 43.7 bits (102), Expect = 1e-05
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 1 IFAYLNYLTPKTRLEIIELLIKGLKRLEYRGYDSSG 36
I + + + + L L++RG D++G
Sbjct: 3 IVGIAG------VMPVNQSIYDALTVLQHRGQDAAG 32
>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase,
N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Length = 234
Score = 42.3 bits (98), Expect = 3e-05
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 1 IFAYLNYLTPKTRLEIIELLIKGLKRLEYRGYDSSGNNELEGDHLARH 48
+F E ++ GL L++RG + +G +G+ L H
Sbjct: 3 VFGIWG------HEEAPQITYYGLHSLQHRGQEGAGIVATDGEKLTAH 44
>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 238
Score = 41.4 bits (96), Expect = 7e-05
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 6/36 (16%)
Query: 1 IFAYLNYLTPKTRLEIIELLIKGLKRLEYRGYDSSG 36
I + + ++ E+L++GL+RLEYRGYDS+G
Sbjct: 3 IVGAIA------QRDVAEILLEGLRRLEYRGYDSAG 32
Score = 32.5 bits (73), Expect = 0.062
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 43 DHLARHIAIMEGAFALCFKSKLFPGECVATRRGSPLLVGIK-TKTRLATDHIPIL 96
+ + R I + GA+ P +A R GSPL++G+ + +A+D + +L
Sbjct: 143 EAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALL 197
>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis
[TaxId: 1423]}
Length = 186
Score = 39.4 bits (91), Expect = 2e-04
Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 4/108 (3%)
Query: 127 PVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE 186
P+ D+ S SGET + K+ ++ +T SSI +++ I + P+
Sbjct: 76 PLAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSPK 135
Query: 187 ---IGVASTKAYTSQFISLVMFALVMCEDRISLQTRRNEIIKGLKVIH 231
G T + + L ++ + + H
Sbjct: 136 DQSNGSYKTIQPMGSLFEQTLLLFYDAV-ILKLMEKKGLDSETMFTHH 182
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus
denitrificans [TaxId: 266]}
Length = 176
Score = 28.9 bits (65), Expect = 0.68
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 305 PVIMILTRDPVYVKCMNALLQVIARDGRPIVI-CEKGDTETQALAT 349
I++ + ++ M LL+ + + +P++I E D E +ALAT
Sbjct: 28 AYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAE--DVEGEALAT 71
>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 192
Score = 28.0 bits (61), Expect = 1.4
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 1 IFAYLNYLTPKTRLEIIELLIKGLKRLEYRGYDSSG 36
IF + T L + ++ + + +RG D SG
Sbjct: 3 IFGVFDIKTDAVELR--KKALELSRLMRHRGPDWSG 36
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium
tuberculosis, GroEL2 [TaxId: 1773]}
Length = 184
Score = 25.6 bits (56), Expect = 7.5
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 305 PVIMILTRDPVYVKCMNALLQVIARDGRPIVI-CEKGDTETQALAT 349
P I++++ VK + LL+ + G+P++I E D E +AL+T
Sbjct: 27 PYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAE--DVEGEALST 70
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId:
274]}
Length = 145
Score = 25.1 bits (55), Expect = 8.6
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Query: 323 LLQVIARDGRPIVI-CEKGDTETQALAT 349
+L+ +A+ G+P++I E D E +ALAT
Sbjct: 45 ILEQVAQTGKPLLIIAE--DVEGEALAT 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.395
Gapped
Lambda K H
0.267 0.0638 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,260,483
Number of extensions: 57038
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 18
Length of query: 361
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 275
Effective length of database: 1,226,816
Effective search space: 337374400
Effective search space used: 337374400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)