Query psy1916
Match_columns 195
No_of_seqs 113 out of 361
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 19:33:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03155 Alg6_Alg8: ALG6, ALG8 100.0 1E-82 2.2E-87 592.8 17.2 186 2-195 15-212 (469)
2 KOG2575|consensus 100.0 9.2E-78 2E-82 549.1 13.2 181 5-195 61-247 (510)
3 KOG2576|consensus 100.0 1.7E-73 3.6E-78 520.3 9.5 185 2-195 24-210 (500)
4 PF09594 DUF2029: Protein of u 98.0 0.00029 6.3E-09 58.0 13.2 60 124-184 60-119 (241)
5 TIGR03459 crt_membr carotene b 97.6 0.0015 3.2E-08 62.3 13.5 125 36-190 141-267 (470)
6 PF13231 PMT_2: Dolichyl-phosp 97.4 0.0065 1.4E-07 46.6 13.1 124 37-191 1-131 (159)
7 COG5542 Predicted integral mem 97.2 0.001 2.2E-08 62.5 6.8 132 34-192 91-222 (420)
8 COG1807 ArnT 4-amino-4-deoxy-L 94.0 2.2 4.8E-05 40.2 14.5 147 8-190 39-193 (535)
9 PF06728 PIG-U: GPI transamida 94.0 2.9 6.2E-05 38.6 14.8 120 70-191 76-195 (382)
10 PF05208 ALG3: ALG3 protein; 93.9 0.13 2.8E-06 48.0 5.8 51 142-192 130-180 (368)
11 COG5650 Predicted integral mem 93.1 0.14 3E-06 49.7 4.9 69 121-193 200-268 (536)
12 PF10131 PTPS_related: 6-pyruv 93.1 2.6 5.7E-05 41.5 13.7 123 38-190 4-135 (616)
13 PF02366 PMT: Dolichyl-phospha 93.1 1.2 2.6E-05 37.6 10.1 98 72-182 80-189 (245)
14 PLN02841 GPI mannosyltransfera 91.8 4.3 9.3E-05 38.8 12.9 124 34-190 62-185 (440)
15 PF09852 DUF2079: Predicted me 91.5 2.3 4.9E-05 39.7 10.7 76 115-190 88-163 (449)
16 PF05007 Mannosyl_trans: Manno 89.8 0.77 1.7E-05 40.9 5.7 49 144-192 10-58 (259)
17 KOG2762|consensus 85.2 1.2 2.6E-05 42.0 4.2 51 142-192 158-208 (429)
18 PF14897 EpsG: EpsG family 80.4 35 0.00077 29.0 14.5 61 129-189 102-162 (330)
19 PRK13375 pimE mannosyltransfer 78.3 40 0.00086 32.0 11.7 41 138-181 152-192 (409)
20 TIGR03663 conserved hypothetic 72.1 90 0.0019 29.5 13.8 68 117-185 99-173 (439)
21 COG1287 Uncharacterized membra 71.7 95 0.0021 31.4 13.2 83 33-145 80-168 (773)
22 TIGR03766 conserved hypothetic 62.2 1.5E+02 0.0032 28.2 14.6 30 162-191 223-252 (483)
23 COG1928 PMT1 Dolichyl-phosphat 61.0 98 0.0021 31.6 10.7 110 27-157 62-179 (699)
24 PRK13279 arnT 4-amino-4-deoxy- 57.3 2E+02 0.0043 28.3 13.8 117 36-183 60-188 (552)
25 PF14264 Glucos_trans_II: Gluc 54.0 1.5E+02 0.0032 25.8 10.9 68 118-187 79-152 (319)
26 PF04188 Mannosyl_trans2: Mann 50.0 2.3E+02 0.0049 26.8 11.8 75 116-193 142-217 (443)
27 PF10067 DUF2306: Predicted me 49.2 8.7 0.00019 29.0 1.1 15 4-18 64-78 (103)
28 PF11028 DUF2723: Protein of u 45.0 1.9E+02 0.004 24.3 11.6 58 133-190 94-167 (178)
29 TIGR03063 srtB_target sortase 39.9 33 0.00071 21.0 2.4 18 176-193 9-28 (29)
30 PHA01514 O-antigen conversion 33.1 4.7E+02 0.01 25.5 11.9 121 33-184 45-172 (485)
31 PF09913 DUF2142: Predicted me 30.6 4E+02 0.0086 23.9 13.5 119 38-187 95-223 (389)
32 KOG3893|consensus 30.2 1.2E+02 0.0025 28.8 5.3 74 116-190 125-198 (405)
33 PF02516 STT3: Oligosaccharyl 28.4 3E+02 0.0066 25.2 7.9 17 36-52 68-84 (483)
34 PF11049 KSHV_K1: Glycoprotein 27.7 26 0.00056 25.7 0.6 23 19-42 9-31 (71)
35 PF10959 DUF2761: Protein of u 26.9 27 0.00057 26.5 0.5 14 24-37 32-45 (95)
36 KOG4290|consensus 24.8 1.4E+02 0.0029 28.7 4.8 56 83-144 174-229 (429)
37 COG4291 Predicted membrane pro 20.4 2.7E+02 0.0058 24.6 5.5 44 33-88 158-208 (228)
No 1
>PF03155 Alg6_Alg8: ALG6, ALG8 glycosyltransferase family; InterPro: IPR004856 N-linked (asparagine-linked) glycosylation of proteins is mediated by a highly conserved pathway in eukaryotes, in which a lipid (dolichol phosphate)-linked oligosaccharide is assembled at the endoplasmic reticulum membrane prior to the transfer of the oligosaccharide moiety to the target asparagine residues. This oligosaccharide is composed of Glc(3)Man(9)GlcNAc(2). The addition of the three glucose residues is the final series of steps in the synthesis of the oligosaccharide precursor. Alg6 transfers the first glucose residue, and Alg8 transfers the second one []. In the human alg6 gene, a C-T transition, which causes Ala333 to be replaced with Val, has been identified as the cause of a congenital disorder of glycosylation, designated as type Ic OMIM:603147 []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0005789 endoplasmic reticulum membrane
Probab=100.00 E-value=1e-82 Score=592.75 Aligned_cols=186 Identities=45% Similarity=0.848 Sum_probs=170.1
Q ss_pred Cccc------chhhHhhhHHHHhhcCCCCcccccCCCC---ccCCCCchHHHHHHHhhhhhhh-cCCceeee-ecCCCCC
Q psy1916 2 TRTS------TDFEVHRNWLAITNSLPLSQWYTDTTSP---WTLDYPPLFAFFEYLLSFVAYY-FDPQMLDV-KNLNYKS 70 (195)
Q Consensus 2 ~Y~S------gDfEaqRhWmeiT~~LPi~~WY~~~ts~---W~LDYPPl~Ay~~~llg~ia~~-~dp~~~~l-~s~g~~s 70 (195)
.|+| |||||||||||||+|||++|||+||||+ ||||||||||||||+|||+|++ +||+|+++ +||||||
T Consensus 15 ~s~~~~ppm~gDfEaqRhWmeiT~~LP~~~WY~~~t~~l~yW~LDYPPl~Ay~~~~lg~~a~~~~~p~~~~l~~s~g~~s 94 (469)
T PF03155_consen 15 YSGSGTPPMYGDFEAQRHWMEITHNLPISEWYFNDTSNLQYWGLDYPPLFAYFSWLLGKIAHFFIDPEWVALVSSRGYES 94 (469)
T ss_pred cccCCCCCCCCcHHHHHHHHHHHccCCHHHHHhcCCCccCcCcCCCCchHHHHHHHHHhhccccCCchhhccCCCCCCCC
Confidence 5889 9999999999999999999999999766 9999999999999999999999 89999996 6999999
Q ss_pred cchhhhHhHHHHHHHHHHHHH-HHHHHHhhhhhhhhhhccccCCCCchHHHHHHHHHHhhhHhhhhcccccccchHHHHH
Q psy1916 71 SATLLFQRLSVIFTDFVLVYG-VKECADFLTRSKIIKHKKWTQDLGSPVVIFQILIIFNAGLFFVDHIHFQYNGFLFGVL 149 (195)
Q Consensus 71 ~~~~~FmR~tVi~sDll~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~PgLilIDh~HFQYN~~~lGl~ 149 (195)
+++|+|||.|||++|++++++ ++.+++..+.. + +..++++.++.+++++|||||+||||||||||+++|++
T Consensus 95 ~~~~~f~R~tVi~~d~~~~~~a~~~~~~~~~~~------~--~~~~~~~~~~~~~~l~~PgLilIDH~HFQYN~~~lGl~ 166 (469)
T PF03155_consen 95 PSHKLFMRLTVIVSDLLLYIPAVLFFCKSSGRS------R--NQSSKQRFIALLLILLNPGLILIDHGHFQYNGFLLGLL 166 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------h--ccchhHHHHHHHHHHHCchHHhhhhhhhhHHHHHHHHH
Confidence 999999999999999998765 77787766331 1 01144567888899999999999999999999999999
Q ss_pred HHHHHHHHcCchhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccC
Q psy1916 150 LLSIARILEGNCYEGAFWFAVLLNLKHIFIYIAPAYFVFLLRNHFT 195 (195)
Q Consensus 150 l~si~~~~~~~~l~~a~~F~~~LnfKqm~LY~Ap~~F~yLL~~y~~ 195 (195)
++|++++.+|++++||++|+++||||||+||+||+||+||||+|++
T Consensus 167 l~si~~~~~~~~l~~a~~F~~~Ln~Kqm~LY~Ap~~f~yLL~~c~~ 212 (469)
T PF03155_consen 167 LLSIAALIRGRYLLGAILFSLLLNFKQMFLYYAPAFFVYLLGSCFQ 212 (469)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999864
No 2
>KOG2575|consensus
Probab=100.00 E-value=9.2e-78 Score=549.14 Aligned_cols=181 Identities=33% Similarity=0.645 Sum_probs=166.2
Q ss_pred cchhhHhhhHHHHhhcCCCCccccc----CCCCccCCCCchHHHHHHHhhhhhhhcCCceeeee-cCCCCCcchhhhHhH
Q psy1916 5 STDFEVHRNWLAITNSLPLSQWYTD----TTSPWTLDYPPLFAFFEYLLSFVAYYFDPQMLDVK-NLNYKSSATLLFQRL 79 (195)
Q Consensus 5 SgDfEaqRhWmeiT~~LPi~~WY~~----~ts~W~LDYPPl~Ay~~~llg~ia~~~dp~~~~l~-s~g~~s~~~~~FmR~ 79 (195)
-|||||||||||||.|||++|||+| |.+||||||||+||||||++|.|++++||+|++++ ||||||..||+|||.
T Consensus 61 yGDyEAQRHWmEIT~nLPv~qWY~n~t~NDLqYWGLDYPPLTAYhSyl~G~i~~f~NP~wvaL~tSRGfES~~hKlfMR~ 140 (510)
T KOG2575|consen 61 YGDYEAQRHWMEITVNLPVSQWYFNGTHNDLQYWGLDYPPLTAYHSYLLGIIGNFINPEWVALHTSRGFESIAHKLFMRS 140 (510)
T ss_pred CCCHHHHHHHHHHhhcCcHHHHhhcCCCCccceecCCCCcHHHHHHHHHHHHHhhcChhHhhhhccCCcccHHHHHHHHH
Confidence 3899999999999999999999999 77899999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHhhhhhhhhhhccccCCCCchHHHHHHHHHHhhhHhhhhcccccccchHHHHHHHHHHHHHc
Q psy1916 80 SVIFTDFVL-VYGVKECADFLTRSKIIKHKKWTQDLGSPVVIFQILIIFNAGLFFVDHIHFQYNGFLFGVLLLSIARILE 158 (195)
Q Consensus 80 tVi~sDll~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~PgLilIDh~HFQYN~~~lGl~l~si~~~~~ 158 (195)
|||++|+++ ++|+..++++++| +++ +..+.+.+++++++|+|++||||||||||+|||++++||+.+.+
T Consensus 141 TViisd~liy~Pa~ify~~~~~r--~~~--------~~~~~a~~~~iLl~P~L~LID~GHFQYNsisLGl~~~ai~~ll~ 210 (510)
T KOG2575|consen 141 TVIISDLLIYLPALIFYFKWLHR--TRS--------KKSKIAYAALILLYPSLLLIDHGHFQYNSISLGLTLYAIAALLK 210 (510)
T ss_pred HHHHHhHHHHhhHHHHHHHHhhh--ccC--------cccHHHHHHHHHhCCceEEEecCcceechhHHHHHHHHHHHHHH
Confidence 999999886 5688888888864 111 12234556789999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccC
Q psy1916 159 GNCYEGAFWFAVLLNLKHIFIYIAPAYFVFLLRNHFT 195 (195)
Q Consensus 159 ~~~l~~a~~F~~~LnfKqm~LY~Ap~~F~yLL~~y~~ 195 (195)
+.+++|+++||++||+|||+||||||+|+||||+|.+
T Consensus 211 ~~~~~as~~F~LAlnyKQMeLY~A~pfF~fLLg~c~k 247 (510)
T KOG2575|consen 211 NFYVLASVLFVLALNYKQMELYHALPFFAFLLGSCLK 247 (510)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999964
No 3
>KOG2576|consensus
Probab=100.00 E-value=1.7e-73 Score=520.34 Aligned_cols=185 Identities=59% Similarity=1.005 Sum_probs=169.2
Q ss_pred CcccchhhHhhhHHHHhhcCCCCcccccCCCCccCCCCchHHHHHHHhhhhhh--hcCCceeeeecCCCCCcchhhhHhH
Q psy1916 2 TRTSTDFEVHRNWLAITNSLPLSQWYTDTTSPWTLDYPPLFAFFEYLLSFVAY--YFDPQMLDVKNLNYKSSATLLFQRL 79 (195)
Q Consensus 2 ~Y~SgDfEaqRhWmeiT~~LPi~~WY~~~ts~W~LDYPPl~Ay~~~llg~ia~--~~dp~~~~l~s~g~~s~~~~~FmR~ 79 (195)
+||||||||||||||||++||++|||+|+||||||||||||||+||.++++|+ .+||+|+.+.|.||+|.++..|||.
T Consensus 24 ~Y~STDFEVHRNWLAIT~slPlseWY~eaTSeWTLDYPPFFAYFE~~LS~vA~ff~fD~~ml~~~~l~y~s~~tl~FQR~ 103 (500)
T KOG2576|consen 24 AYRSTDFEVHRNWLAITHSLPLSEWYYEATSEWTLDYPPFFAYFEWFLSQVAKFFGFDPRMLDVKNLNYFSRRTLYFQRF 103 (500)
T ss_pred cccccchhhhhhHHHHhccCchHHHHHhcccceecCCCcHHHHHHHHHHHHHHHhcCCchheeccccCCCCcceEEEEee
Confidence 69999999999999999999999999999999999999999999999999999 7899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCchHHHHHHHHHHhhhHhhhhcccccccchHHHHHHHHHHHHHcC
Q psy1916 80 SVIFTDFVLVYGVKECADFLTRSKIIKHKKWTQDLGSPVVIFQILIIFNAGLFFVDHIHFQYNGFLFGVLLLSIARILEG 159 (195)
Q Consensus 80 tVi~sDll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~PgLilIDh~HFQYN~~~lGl~l~si~~~~~~ 159 (195)
|||++|+++++++..-+ ...++.. +.++++.+++.+++++|||+|||||||||||+++|++++||+++.++
T Consensus 104 SVIf~dll~~~~~rr~~--~l~~kl~-------k~~~~~~~~a~ll~~s~gLlIvDhIHFQYNgfLfgilLlSI~~l~~k 174 (500)
T KOG2576|consen 104 SVIFSDLLLLYGLRRSY--RLTSKLG-------KDQKQRFACAVLLLLSPGLLIVDHIHFQYNGFLFGILLLSIVFLKTK 174 (500)
T ss_pred hhHHHHHHHHHHHhhhh--cccccCC-------cccccchHHHHHHHhCCCcEEEEEeeeecccHHHHHHHHHHHHHhhh
Confidence 99999999998875211 1111111 12455688888999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccC
Q psy1916 160 NCYEGAFWFAVLLNLKHIFIYIAPAYFVFLLRNHFT 195 (195)
Q Consensus 160 ~~l~~a~~F~~~LnfKqm~LY~Ap~~F~yLL~~y~~ 195 (195)
|.+++|+.|+++||||||++|+||+||+|+||+||.
T Consensus 175 r~l~~A~~fsvll~FKHIflY~ApaY~vylLr~Yc~ 210 (500)
T KOG2576|consen 175 RYLLSAFLFSVLLNFKHIFLYVAPAYFVYLLRNYCL 210 (500)
T ss_pred hHHHHHHHHHHHHhhhhheeeechhHHHHHHHHHHh
Confidence 999999999999999999999999999999999973
No 4
>PF09594 DUF2029: Protein of unknown function (DUF2029); InterPro: IPR018584 This is a putative transmembrane protein from prokaryotes. It is likely to be conserved between Mycobacterium species []. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=97.95 E-value=0.00029 Score=58.00 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=51.5
Q ss_pred HHHHhhhHhhhhcccccccchHHHHHHHHHHHHHcCchhHHHHHHHHHhhhhHHHHHHHHH
Q psy1916 124 LIIFNAGLFFVDHIHFQYNGFLFGVLLLSIARILEGNCYEGAFWFAVLLNLKHIFIYIAPA 184 (195)
Q Consensus 124 l~l~~PgLilIDh~HFQYN~~~lGl~l~si~~~~~~~~l~~a~~F~~~LnfKqm~LY~Ap~ 184 (195)
..+..+.+ +.+.+-.|.|.+...+++.++.+..++|+.+++++.+++...|+.-+-..|+
T Consensus 60 ~~~~~~p~-~~~~~~gq~~~l~~~l~~~a~~~~~r~r~~~agv~lgla~~~K~~p~~~l~~ 119 (241)
T PF09594_consen 60 LLLAFPPV-LSALGLGQFDLLVAALLLLALLALRRGRPWLAGVLLGLAAAIKLYPALLLPA 119 (241)
T ss_pred HHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555 7777778999999999999999999999999999999999999998877773
No 5
>TIGR03459 crt_membr carotene biosynthesis associated membrane protein. This model represents a family of hydrophobic and presumed membrane proteins. The genes encoding these proteins are syntenically associated with (found proximal to) genes of carotene biosynthesis ususally including phytoene synthase (crtB), phytoene dehydrogenase (crtI) and geranylgeranyl pyrophosphate synthase (ispA).
Probab=97.60 E-value=0.0015 Score=62.33 Aligned_cols=125 Identities=20% Similarity=0.175 Sum_probs=95.2
Q ss_pred CCCCchHHHHHHHhhhhhhhcCCceeeeecCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCC
Q psy1916 36 LDYPPLFAFFEYLLSFVAYYFDPQMLDVKNLNYKSSATLLFQRLSVIFTDFVLVYGVKECADFLTRSKIIKHKKWTQDLG 115 (195)
Q Consensus 36 LDYPPl~Ay~~~llg~ia~~~dp~~~~l~s~g~~s~~~~~FmR~tVi~sDll~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 115 (195)
--|||++-+.+-..+.+.. | .-...++-+|+..++++++...++.+..|.++.
T Consensus 141 aPYGPl~l~i~~~v~~l~g--~-----------~i~~~v~~~Rl~~l~g~~l~~w~~~rLar~~g~-------------- 193 (470)
T TIGR03459 141 TPYGPLHLLVGQAITTVTG--D-----------NVTAGTLAFKLLSLPGLAVMVWAVPKLATHLGG-------------- 193 (470)
T ss_pred CCCChHHHHHHHHHHHHhC--C-----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------
Confidence 5688888776555544421 1 122446889999999999988888777766543
Q ss_pred chHHHHHHHHHHhhhHhh--hhcccccccchHHHHHHHHHHHHHcCchhHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy1916 116 SPVVIFQILIIFNAGLFF--VDHIHFQYNGFLFGVLLLSIARILEGNCYEGAFWFAVLLNLKHIFIYIAPAYFVFLL 190 (195)
Q Consensus 116 ~~~~~~~~l~l~~PgLil--IDh~HFQYN~~~lGl~l~si~~~~~~~~l~~a~~F~~~LnfKqm~LY~Ap~~F~yLL 190 (195)
+...+.-+..+||=.|+ |-.+|+ .++|+|++++++....+++.+.|+++-+++..-|...+-..|.++-...
T Consensus 194 -~~~~AlWL~~~NPLviihlvgg~Hn--ealM~gl~l~gl~~~~r~~~~~g~vli~~a~~VK~~a~l~Lpf~~~~~~ 267 (470)
T TIGR03459 194 -NPTVALWLGVLNPLVVIHLIGGMHN--EMLMVGLVSAGILLALKRRPVAGIALIAVAVALKATAGIALPFVVWIWV 267 (470)
T ss_pred -CHHHHHHHHHcCchhhhhhhcchhH--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 11233445678997764 677887 7999999999999999999999999999999999999998887665443
No 6
>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase
Probab=97.44 E-value=0.0065 Score=46.57 Aligned_cols=124 Identities=18% Similarity=0.246 Sum_probs=87.7
Q ss_pred CCCchHHHHHHHhhhhhhhcCCceeeeecCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCc
Q psy1916 37 DYPPLFAFFEYLLSFVAYYFDPQMLDVKNLNYKSSATLLFQRLSVIFTDFVLVYGVKECADFLTRSKIIKHKKWTQDLGS 116 (195)
Q Consensus 37 DYPPl~Ay~~~llg~ia~~~dp~~~~l~s~g~~s~~~~~FmR~tVi~sDll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (195)
|=||+..|.-....++- + ....-.|...++.-.+....++..+|...+ ++
T Consensus 1 ~~pPl~~~~~~~~~~l~---G--------------~~~~~~~~~~~l~~~~~~~~~y~i~r~~~~-------------~~ 50 (159)
T PF13231_consen 1 DHPPLYFLLLALFFKLF---G--------------DSVWALRLFNILFSLLTLLLIYLIARRLFG-------------RR 50 (159)
T ss_pred CCChHHHHHHHHHHHHh---C--------------cCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------ch
Confidence 56999998887766643 2 133455777777777766677777665532 34
Q ss_pred hHHHHHHHHHHhhhHhhhhcccccccchHHHHHHHHHHHHHc----Cc---hhHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy1916 117 PVVIFQILIIFNAGLFFVDHIHFQYNGFLFGVLLLSIARILE----GN---CYEGAFWFAVLLNLKHIFIYIAPAYFVFL 189 (195)
Q Consensus 117 ~~~~~~~l~l~~PgLilIDh~HFQYN~~~lGl~l~si~~~~~----~~---~l~~a~~F~~~LnfKqm~LY~Ap~~F~yL 189 (195)
.+..+.++..+.|..+.--. ..+-+..++.+.++++....+ ++ .++++++++++...|...+.+.|+.++++
T Consensus 51 ~a~~~~l~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k~~~~~~~~~~~~~l 129 (159)
T PF13231_consen 51 AALIAALLLALSPMFIFYSA-SARPDMLLLFFFLLALYAFYRYIKSKKWRWWILAGLLLGLAFLTKYTFLLLIPALLLYL 129 (159)
T ss_pred HHHHHHHHHHHhHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777887766655 666677777777777765542 22 35789999999999999999999998877
Q ss_pred hh
Q psy1916 190 LR 191 (195)
Q Consensus 190 L~ 191 (195)
+.
T Consensus 130 ~~ 131 (159)
T PF13231_consen 130 LL 131 (159)
T ss_pred HH
Confidence 64
No 7
>COG5542 Predicted integral membrane protein [Function unknown]
Probab=97.17 E-value=0.001 Score=62.52 Aligned_cols=132 Identities=20% Similarity=0.269 Sum_probs=101.5
Q ss_pred ccCCCCchHHHHHHHhhhhhhhcCCceeeeecCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCC
Q psy1916 34 WTLDYPPLFAFFEYLLSFVAYYFDPQMLDVKNLNYKSSATLLFQRLSVIFTDFVLVYGVKECADFLTRSKIIKHKKWTQD 113 (195)
Q Consensus 34 W~LDYPPl~Ay~~~llg~ia~~~dp~~~~l~s~g~~s~~~~~FmR~tVi~sDll~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (195)
--.||+|+.-|..-+.++++....++ +=-.+.-+++|++..+.++...|.....
T Consensus 91 ~~~~~~p~~~y~i~ii~~L~~~~~~~---------------l~~~l~s~~~~~~~ay~lY~~tk~~y~~----------- 144 (420)
T COG5542 91 HFADYFPLYLYWIRIINKLLSSLYFI---------------LAIKLFSNIADFVAAYFLYKITKLRYGL----------- 144 (420)
T ss_pred cccccCchHHHHHHHHHHHHhhhHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHccc-----------
Confidence 34899999999999999988762221 1113344666777666666666543320
Q ss_pred CCchHHHHHHHHHHhhhHhhhhcccccccchHHHHHHHHHHHHHcCchhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy1916 114 LGSPVVIFQILIIFNAGLFFVDHIHFQYNGFLFGVLLLSIARILEGNCYEGAFWFAVLLNLKHIFIYIAPAYFVFLLRN 192 (195)
Q Consensus 114 ~~~~~~~~~~l~l~~PgLilIDh~HFQYN~~~lGl~l~si~~~~~~~~l~~a~~F~~~LnfKqm~LY~Ap~~F~yLL~~ 192 (195)
.+.+..+..+..++|..+..--+.-|=.|+-+-+.++++.++.+++...|+++|+++..+|--.+..+|.+.+-+.++
T Consensus 145 -~~~a~fa~i~~~~~P~~i~~s~iw~~teSlf~ll~~l~iyf~~~k~~~~a~~~faLa~l~Rsngi~~~p~fl~~~ik~ 222 (420)
T COG5542 145 -GSMARFATILVILSPSVIYNSAIWGQTESLFTLLSILAIYFFSIKKQIPALFFFALATLFRSNGIFLSPLFLIPLIKN 222 (420)
T ss_pred -chhhhheEEEEEeccHHHhhhhHHhccchHHHHHHHHHHHHHHccchhHHHHHHHHHHHhccchhHHHHHHHHHHHhh
Confidence 122234455667789999999999999999999999999999999999999999999999999999999998877653
No 8
>COG1807 ArnT 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
Probab=94.02 E-value=2.2 Score=40.25 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=93.4
Q ss_pred hhHhhhHHHHhhcCCCCcccccCCCCccCCCCchHHHHHHHhhhhhhhcCCceeeeecCCCCCcchhhhHhHHHHHHHHH
Q psy1916 8 FEVHRNWLAITNSLPLSQWYTDTTSPWTLDYPPLFAFFEYLLSFVAYYFDPQMLDVKNLNYKSSATLLFQRLSVIFTDFV 87 (195)
Q Consensus 8 fEaqRhWmeiT~~LPi~~WY~~~ts~W~LDYPPl~Ay~~~llg~ia~~~dp~~~~l~s~g~~s~~~~~FmR~tVi~sDll 87 (195)
.|+.|+.+|--.+. .-++.+.. .-|.||+..|...+--++.. ....=.|+...++=.+
T Consensus 39 ~~~~~~m~~s~~w~--~~~~~g~~---~~~kPPl~~Wl~a~~~~lfG-----------------~~~~~~rl~~~l~~~~ 96 (535)
T COG1807 39 AEIAREMLESGDWF--TPQLLGLP---YFEKPPLVYWLQALSYLLFG-----------------VNEWSARLPSALAGAL 96 (535)
T ss_pred HHHHHHHHHcCCCc--ceeeCCcc---ccCCCcHHHHHHHHHHHHcC-----------------cchHHHHHHHHHHHHH
Confidence 67777777763222 22222222 26999999998775444322 1223457777777665
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccCCCCchHHHHHHHHHHhhhHhhhhcccccccchHHHHHHHHHHHHHcCch------
Q psy1916 88 LVYGVKECADFLTRSKIIKHKKWTQDLGSPVVIFQILIIFNAGLFFVDHIHFQYNGFLFGVLLLSIARILEGNC------ 161 (195)
Q Consensus 88 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~PgLilIDh~HFQYN~~~lGl~l~si~~~~~~~~------ 161 (195)
....++...|...+ ++...++++++++.|..+..-+.+- =+..+..++.+|+.++.+.++
T Consensus 97 ~~~l~y~l~k~l~~-------------~~~a~~aali~~~~p~~~~~~~~~~-~D~~l~~f~~la~~~~~~~~~~~~~~~ 162 (535)
T COG1807 97 TALLVYWLAKRLFG-------------RLAALLAALILLLTPLFFLIGRLAL-LDAALAFFLTLALALLYLALRARGKLK 162 (535)
T ss_pred HHHHHHHHHHHHhc-------------cHHHHHHHHHHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 56667766665543 1344667777777888877766543 566677777777776643322
Q ss_pred --hHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy1916 162 --YEGAFWFAVLLNLKHIFIYIAPAYFVFLL 190 (195)
Q Consensus 162 --l~~a~~F~~~LnfKqm~LY~Ap~~F~yLL 190 (195)
++..+...++...|-...+.-|+.++.++
T Consensus 163 ~~l~~gl~lGL~~ltKg~~~~~l~~~~~~~l 193 (535)
T COG1807 163 WLLLLGLALGLGFLTKGPGALLLPLILLLLL 193 (535)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 56688889999999999999995444433
No 9
>PF06728 PIG-U: GPI transamidase subunit PIG-U; InterPro: IPR009600 Many eukaryotic proteins are anchored to the cell surface via glycosylphosphatidylinositol (GPI), which is posttranslationally attached to the C terminus by GPI transamidase. The mammalian GPI transamidase is a complex of at least four subunits, GPI8, GAA1, PIG-S, and PIG-T. PIG-U is thought to represent a fifth subunit in this complex and may be involved in the recognition of either the GPI attachment signal or the lipid portion of GPI [].; GO: 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=93.96 E-value=2.9 Score=38.61 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=78.1
Q ss_pred CcchhhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCchHHHHHHHHHHhhhHhhhhcccccccchHHHHH
Q psy1916 70 SSATLLFQRLSVIFTDFVLVYGVKECADFLTRSKIIKHKKWTQDLGSPVVIFQILIIFNAGLFFVDHIHFQYNGFLFGVL 149 (195)
Q Consensus 70 s~~~~~FmR~tVi~sDll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~PgLilIDh~HFQYN~~~lGl~ 149 (195)
+........+-=+++|++....++...+...+....+.++ .++.+.....++...++||=.|+ -.+--.=-++.--++
T Consensus 76 ~~~~~~~~~llf~~~Dl~~A~~L~~i~~~~~~~~~~~~~~-~~~~~~~~~lv~~~YLfNP~tIl-scva~ST~~f~nl~i 153 (382)
T PF06728_consen 76 SPNSPILISLLFILVDLLIAWLLYRIAKSYQKQESKRQKS-PNEKSSSPWLVAAFYLFNPLTIL-SCVALSTTVFTNLFI 153 (382)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC-chhcccchHHHHHHHHHCHHHHH-HHHhcccHHHHHHHH
Confidence 3344444555567789988777777665554311111111 11112345677788999998876 444445555666778
Q ss_pred HHHHHHHHcCchhHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q psy1916 150 LLSIARILEGNCYEGAFWFAVLLNLKHIFIYIAPAYFVFLLR 191 (195)
Q Consensus 150 l~si~~~~~~~~l~~a~~F~~~LnfKqm~LY~Ap~~F~yLL~ 191 (195)
+.++.+..+|+..++++..+++-...-=-+...||....+.+
T Consensus 154 ~~sl~~a~~g~~~~s~i~lAlatylSlYpi~Ll~Plll~l~~ 195 (382)
T PF06728_consen 154 LLSLYFAVKGNVFLSAISLALATYLSLYPILLLPPLLLLLYS 195 (382)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 888999999999999999999887666666667776655543
No 10
>PF05208 ALG3: ALG3 protein; InterPro: IPR007873 The formation of N-glycosidic linkages of glycoproteins involves the ordered assembly of the common Glc3Man9GlcNAc2 core-oligosaccharide on the lipid carrier dolichyl pyrophosphate. Whereas early mannosylation steps occur on the cytoplasmic side of the endoplasmic reticulum with GDP-Man as donor, the final reactions from Man5GlcNAc2-PP-Dol to Man9GlcNAc2-PP-Dol on the lumenal side use Dol-P-Man []. The ALG3 gene encodes the Dol-P-Man:Man5GlcNAc2-PP-Dol mannosyltransferase.; GO: 0016758 transferase activity, transferring hexosyl groups, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=93.89 E-value=0.13 Score=47.98 Aligned_cols=51 Identities=22% Similarity=0.362 Sum_probs=45.9
Q ss_pred cchHHHHHHHHHHHHHcCchhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy1916 142 NGFLFGVLLLSIARILEGNCYEGAFWFAVLLNLKHIFIYIAPAYFVFLLRN 192 (195)
Q Consensus 142 N~~~lGl~l~si~~~~~~~~l~~a~~F~~~LnfKqm~LY~Ap~~F~yLL~~ 192 (195)
+|+..-++-.|+.++.+++-.+||++|++++.-|-=.|-|+|++.+.++.+
T Consensus 130 D~~a~~~~~~ai~~~~~~~w~~g~~~yS~avSIKMN~LL~~Pall~~~l~~ 180 (368)
T PF05208_consen 130 DCFAMLFLYAAILLFQRRRWLLGSLLYSLAVSIKMNALLFAPALLVLLLQS 180 (368)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHc
Confidence 466777777899999999999999999999999999999999999988764
No 11
>COG5650 Predicted integral membrane protein [Function unknown]
Probab=93.11 E-value=0.14 Score=49.72 Aligned_cols=69 Identities=9% Similarity=0.088 Sum_probs=56.0
Q ss_pred HHHHHHHhhhHhhhhcccccccchHHHHHHHHHHHHHcCchhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhc
Q psy1916 121 FQILIIFNAGLFFVDHIHFQYNGFLFGVLLLSIARILEGNCYEGAFWFAVLLNLKHIFIYIAPAYFVFLLRNH 193 (195)
Q Consensus 121 ~~~l~l~~PgLilIDh~HFQYN~~~lGl~l~si~~~~~~~~l~~a~~F~~~LnfKqm~LY~Ap~~F~yLL~~y 193 (195)
...++..+| +++=+.=-|...+...++..+..| +||..++++++.++..+||.-++..|++..++-++|
T Consensus 200 ~valv~as~--~v~f~v~~~~DtI~~ffla~a~v~--r~rP~lAGvl~Gls~a~K~~P~Ivl~pll~~~~key 268 (536)
T COG5650 200 DVALVAASP--LVGFAVFTVFDTIWAFFLAAALVC--RGRPKLAGVLIGLSSAFKQIPLIVLPPLLYLIYKEY 268 (536)
T ss_pred eeeeeeccc--eEEEEEecchhHHHHHHHHHHHHh--cCCchHHHHHHHHHHHhhcCchhhHHHHHHHHHHhc
Confidence 334556677 444455567778877777777777 999999999999999999999999999999988876
No 12
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=93.10 E-value=2.6 Score=41.46 Aligned_cols=123 Identities=24% Similarity=0.260 Sum_probs=72.5
Q ss_pred CCchHHHHHHHhhhhhhhcCCceeeeecCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCch
Q psy1916 38 YPPLFAFFEYLLSFVAYYFDPQMLDVKNLNYKSSATLLFQRLSVIFTDFVLVYGVKECADFLTRSKIIKHKKWTQDLGSP 117 (195)
Q Consensus 38 YPPl~Ay~~~llg~ia~~~dp~~~~l~s~g~~s~~~~~FmR~tVi~sDll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (195)
||||+.|.--+++.+.. || . .-..++++++=++...+.+.+.|...+ +..
T Consensus 4 YpPL~yyl~a~l~~l~g--~~--------------~-~Ay~l~~~L~~~l~~~~~Y~~~R~~~~-------------~~~ 53 (616)
T PF10131_consen 4 YPPLPYYLGALLSLLFG--NP--------------I-VAYKLFIFLAFFLGGLGMYFLGRRLGR-------------RKA 53 (616)
T ss_pred CCcHHHHHHHHHHHHhC--CH--------------H-HHHHHHHHHHHHHHHHHHHHHHHHhcc-------------hhH
Confidence 99999999888888761 21 1 112344455544444555666555432 234
Q ss_pred HHHHHHHHHHhhhHhhhhcccccccch----HHHHHHHHHHHHHcCc---hhHHHHHHHHHhhhhH--HHHHHHHHHHHH
Q psy1916 118 VVIFQILIIFNAGLFFVDHIHFQYNGF----LFGVLLLSIARILEGN---CYEGAFWFAVLLNLKH--IFIYIAPAYFVF 188 (195)
Q Consensus 118 ~~~~~~l~l~~PgLilIDh~HFQYN~~----~lGl~l~si~~~~~~~---~l~~a~~F~~~LnfKq--m~LY~Ap~~F~y 188 (195)
+.+++++.++.|..+...+.+..+=.. ++=+++++...+.+++ .+....+-..++.+=| ..+....+.+++
T Consensus 54 A~l~aiLyl~~py~l~~~y~rgni~e~lA~~llPlvll~~~~~~~~~~~r~~~~lAl~~all~lsHll~~ll~~l~~~~~ 133 (616)
T PF10131_consen 54 AILAAILYLFSPYHLRNIYWRGNIPETLAFALLPLVLLFLYRFIKKRKYRYWILLALSMALLALSHLLSTLLTGLALIVF 133 (616)
T ss_pred HHHHHHHHHHhHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 577788888899999888887766554 2223444544444333 3433333333444456 666667777776
Q ss_pred Hh
Q psy1916 189 LL 190 (195)
Q Consensus 189 LL 190 (195)
+|
T Consensus 134 lL 135 (616)
T PF10131_consen 134 LL 135 (616)
T ss_pred HH
Confidence 65
No 13
>PF02366 PMT: Dolichyl-phosphate-mannose-protein mannosyltransferase ; InterPro: IPR003342 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Dolichyl-phosphate-mannose-protein mannosyltransferase proteins 2.4.1.109 from EC belong to the glycosyltransferase family 39 (GT39 from CAZY) and are responsible for O-linked glycosylation of proteins. They catalyse the reaction: Dolichyl phosphate D-mannose + protein -> dolichyl phosphate + O-D-mannosyl-protein. The transfer of mannose to seryl and threonyl residues of secretory proteins is catalyzed by a family of protein mannosyltransferases in Saccharomyces cerevisiae coded for by seven genes (PMT1-7). Protein O-glycosylation is essential for cell wall rigidity and cell integrity and this protein modification is vital for S. cerevisiae [].; GO: 0000030 mannosyltransferase activity, 0006493 protein O-linked glycosylation, 0016020 membrane
Probab=93.09 E-value=1.2 Score=37.57 Aligned_cols=98 Identities=14% Similarity=0.067 Sum_probs=66.7
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCchHHHHHHHHHHhhhHhhhhcccccccchHHHHHHH
Q psy1916 72 ATLLFQRLSVIFTDFVLVYGVKECADFLTRSKIIKHKKWTQDLGSPVVIFQILIIFNAGLFFVDHIHFQYNGFLFGVLLL 151 (195)
Q Consensus 72 ~~~~FmR~tVi~sDll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~PgLilIDh~HFQYN~~~lGl~l~ 151 (195)
....-+|....+.-.+.++.++...+...++ ++...+++++++++|.++...+ .--=++.+.-..++
T Consensus 80 ~~~~~~R~~~~l~~~~~~~l~y~~~~~~~~s------------~~~al~aa~l~~~~~~~~~~sr-~~~~D~~l~~f~~l 146 (245)
T PF02366_consen 80 VNYWAARLPSALFGALTVPLVYLILRRLFGS------------RRAALLAALLLALDPSLIVQSR-YALLDSILLFFILL 146 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------------hhHHHHHHHHHHHhhHHHHHHH-HHhhHHHHHHHHHH
Confidence 4566789998888888777777776655431 2345566667777776654433 23345666666777
Q ss_pred HHHHHHcC------------chhHHHHHHHHHhhhhHHHHHHH
Q psy1916 152 SIARILEG------------NCYEGAFWFAVLLNLKHIFIYIA 182 (195)
Q Consensus 152 si~~~~~~------------~~l~~a~~F~~~LnfKqm~LY~A 182 (195)
|+.++.+. ..+++++...++..-|...++..
T Consensus 147 a~~~~~~~~~~~~~~~~~~~~~~l~gi~lGla~~~K~~~~~~~ 189 (245)
T PF02366_consen 147 AIYCLLRWYRYQPFRRKWWLWLLLAGIALGLAILTKGPGLLLV 189 (245)
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 77666544 35678899999999999988755
No 14
>PLN02841 GPI mannosyltransferase
Probab=91.82 E-value=4.3 Score=38.84 Aligned_cols=124 Identities=16% Similarity=0.252 Sum_probs=82.4
Q ss_pred ccCCCCchHHHHHHHhhhhhhhcCCceeeeecCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCC
Q psy1916 34 WTLDYPPLFAFFEYLLSFVAYYFDPQMLDVKNLNYKSSATLLFQRLSVIFTDFVLVYGVKECADFLTRSKIIKHKKWTQD 113 (195)
Q Consensus 34 W~LDYPPl~Ay~~~llg~ia~~~dp~~~~l~s~g~~s~~~~~FmR~tVi~sDll~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (195)
=|--||||-||.- -|+.. .+..|-+.-=+++|++....+....+.... .
T Consensus 62 ~TYrytPLLa~Ll----------lPn~~----------~~~~fgk~LF~l~Dll~a~ll~~il~~~~~-------~---- 110 (440)
T PLN02841 62 DTYRYSPLLALLL----------VPNSL----------LHRSWGKFLFSAADLLVGLFIHTILRLRGV-------P---- 110 (440)
T ss_pred CCCCcChHHHHHH----------cchhh----------hhhhHHHHHHHHHHHHHHHHHHHHHHHhCc-------c----
Confidence 4677999999865 12110 113344555577898876555544332111 0
Q ss_pred CCchHHHHHHHHHHhhhHhhhhcccccccchHHHHHHHHHHHHHcCchhHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy1916 114 LGSPVVIFQILIIFNAGLFFVDHIHFQYNGFLFGVLLLSIARILEGNCYEGAFWFAVLLNLKHIFIYIAPAYFVFLL 190 (195)
Q Consensus 114 ~~~~~~~~~~l~l~~PgLilIDh~HFQYN~~~lGl~l~si~~~~~~~~l~~a~~F~~~LnfKqm~LY~Ap~~F~yLL 190 (195)
++.....+.+-++||=.+.|--.. -=-++.--++++++.++.+|+..++|++++++.++|===+.|+||+..++-
T Consensus 111 -~~~~~~~a~~wL~NPlti~istrG-Sse~i~~~lvl~~L~~l~~g~~~~Aa~~lglavhfkiYPiIy~~Pi~l~l~ 185 (440)
T PLN02841 111 -EKVCTWSVMVWLFNPFTFTIGTRG-NCEPIVCAVILWILICLMNGRLLQAAFWYGLVVHFRIYPIIYALPIILVLD 185 (440)
T ss_pred -ccccHHHHHHHHhCcHHHHHhccc-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Confidence 112234466789999888876543 122344456778889999999999999999999999777889999888873
No 15
>PF09852 DUF2079: Predicted membrane protein (DUF2079); InterPro: IPR018650 This entry is represented by Sulfolobus virus STSV1, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains a family of various integral membrane proteins with no known function.
Probab=91.53 E-value=2.3 Score=39.75 Aligned_cols=76 Identities=16% Similarity=0.210 Sum_probs=61.3
Q ss_pred CchHHHHHHHHHHhhhHhhhhcccccccchHHHHHHHHHHHHHcCchhHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy1916 115 GSPVVIFQILIIFNAGLFFVDHIHFQYNGFLFGVLLLSIARILEGNCYEGAFWFAVLLNLKHIFIYIAPAYFVFLL 190 (195)
Q Consensus 115 ~~~~~~~~~l~l~~PgLilIDh~HFQYN~~~lGl~l~si~~~~~~~~l~~a~~F~~~LnfKqm~LY~Ap~~F~yLL 190 (195)
++......++.+++|++.=+.-.-|.=+++..-++++++.++.++|.....++..+++.-|--.--..-.+..+++
T Consensus 88 ~~~a~~~~~~ylL~p~~~~~~~~dFH~~~~avPll~~~~~~~~~~r~~~~~~~~ll~llvKEd~~l~v~~~gl~~~ 163 (449)
T PF09852_consen 88 RRLALLIALAYLLSPGLQGANLFDFHPVAFAVPLLLWALYALERRRWRLFILWALLLLLVKEDLGLTVAGIGLYLL 163 (449)
T ss_pred cHHHHHHHHHHHHhHHHHhhhhCCCcHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3455777888999999998887889999999899999999999999999999999999988654444445555544
No 16
>PF05007 Mannosyl_trans: Mannosyltransferase (PIG-M); InterPro: IPR007704 PIG-M has a DXD motif. The DXD motif is found in many glycosyltransferases that utilise nucleotide sugars. It is thought that the motif is involved in the binding of a manganese ion that is required for association of the enzymes with nucleotide sugar substrates [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=89.82 E-value=0.77 Score=40.90 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHcCchhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy1916 144 FLFGVLLLSIARILEGNCYEGAFWFAVLLNLKHIFIYIAPAYFVFLLRN 192 (195)
Q Consensus 144 ~~lGl~l~si~~~~~~~~l~~a~~F~~~LnfKqm~LY~Ap~~F~yLL~~ 192 (195)
++--++++++.++.+||..+||+++.+++++|===+.|+||+..|+.++
T Consensus 10 l~~~lVl~~l~~l~~~~~~~Aa~~lGlaVHfKIYPiIY~~~~~l~l~~~ 58 (259)
T PF05007_consen 10 LLCFLVLLTLYFLLKGRWFLAAILLGLAVHFKIYPIIYALPILLYLSNR 58 (259)
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHhhHHHHhhhccHHHHHHHHHHHhcc
Confidence 3344677889999999999999999999999998999999999998654
No 17
>KOG2762|consensus
Probab=85.17 E-value=1.2 Score=42.00 Aligned_cols=51 Identities=25% Similarity=0.486 Sum_probs=44.0
Q ss_pred cchHHHHHHHHHHHHHcCchhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy1916 142 NGFLFGVLLLSIARILEGNCYEGAFWFAVLLNLKHIFIYIAPAYFVFLLRN 192 (195)
Q Consensus 142 N~~~lGl~l~si~~~~~~~~l~~a~~F~~~LnfKqm~LY~Ap~~F~yLL~~ 192 (195)
+++-.-++-.++....++|-++|+++|++|+.-|-=.|-|||+.++.+|.+
T Consensus 158 D~fa~lll~~~i~~~l~qkw~~gs~~fSlAvSVKMNvLLyaPall~~lL~~ 208 (429)
T KOG2762|consen 158 DPFAMLLLYVAILLFLKQKWLVGSIFFSLAVSVKMNVLLYAPALLLLLLQN 208 (429)
T ss_pred chHHHHHHHHHHHHHHHHHHHhHhhhheeehhhhhhhHHHHHHHHHHHHHh
Confidence 355556667778888888999999999999999999999999999998864
No 18
>PF14897 EpsG: EpsG family
Probab=80.41 E-value=35 Score=29.02 Aligned_cols=61 Identities=13% Similarity=0.202 Sum_probs=46.0
Q ss_pred hhHhhhhcccccccchHHHHHHHHHHHHHcCchhHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy1916 129 AGLFFVDHIHFQYNGFLFGVLLLSIARILEGNCYEGAFWFAVLLNLKHIFIYIAPAYFVFL 189 (195)
Q Consensus 129 PgLilIDh~HFQYN~~~lGl~l~si~~~~~~~~l~~a~~F~~~LnfKqm~LY~Ap~~F~yL 189 (195)
..........-.=+++..++.++|+..+.++|...+.++..++..+-.-++...|.+++.-
T Consensus 102 ~~~~~~~~~~~iRq~~A~~~~~~a~~~~~~~k~~~~~~~~lla~~fH~Saii~l~~~~l~~ 162 (330)
T PF14897_consen 102 SFFFFFYSFNQIRQSLAISFFLLALSYLYKKKWIKFILLVLLAILFHYSAIIFLPLYFLSR 162 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566667899999999999999988888777777778777777777777765544
No 19
>PRK13375 pimE mannosyltransferase; Provisional
Probab=78.30 E-value=40 Score=32.03 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=33.3
Q ss_pred cccccchHHHHHHHHHHHHHcCchhHHHHHHHHHhhhhHHHHHH
Q psy1916 138 HFQYNGFLFGVLLLSIARILEGNCYEGAFWFAVLLNLKHIFIYI 181 (195)
Q Consensus 138 HFQYN~~~lGl~l~si~~~~~~~~l~~a~~F~~~LnfKqm~LY~ 181 (195)
+-|-|.++..++++. +.++|...++++..++-..|-.-+.+
T Consensus 152 ~GQIN~lL~~Lv~~d---ll~~r~~~aGvliGLAaaIKlTPavf 192 (409)
T PRK13375 152 YGQINVFLMLAVLYA---VYSSRWWLSGLLVGLAAGVKLTPAIT 192 (409)
T ss_pred hCcHHHHHHHHHHHH---HhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 348899999888865 34788888999999999999876553
No 20
>TIGR03663 conserved hypothetical protein TIGR03663. Members of this protein family, uncommon and rather sporadically distributed, are found almost always in the same genomes as members of family TIGR03662, and frequently as a nearby gene. Members show some N-terminal sequence similarity with Pfam family pfam02366, dolichyl-phosphate-mannose-protein mannosyltransferase. The few invariant residues in this family, found toward the N-terminus, include a dipeptide DE, a tripeptide HGP, and two different Arg residues. Up to three members may be found in a genome. The function is unknown.
Probab=72.12 E-value=90 Score=29.51 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHhhhHhhhhcccccccchHHHHHHHHHHHHHc----C---chhHHHHHHHHHhhhhHHHHHHHHHH
Q psy1916 117 PVVIFQILIIFNAGLFFVDHIHFQYNGFLFGVLLLSIARILE----G---NCYEGAFWFAVLLNLKHIFIYIAPAY 185 (195)
Q Consensus 117 ~~~~~~~l~l~~PgLilIDh~HFQYN~~~lGl~l~si~~~~~----~---~~l~~a~~F~~~LnfKqm~LY~Ap~~ 185 (195)
...++++++.++|..+...+.- .=+..+....++++.++.+ + ..+++++.+++++.-|...+.+.+.+
T Consensus 99 ~al~AAllla~sp~~~~~sr~~-~~D~~l~~f~~lal~~l~r~~~~~~~~~~~lag~~~gLa~ltKg~~~l~~~~~ 173 (439)
T TIGR03663 99 EVLWAAVLLAFSPVMVYYSRFM-RNDIFVAFFTLLAVGAAFRYLDTGKRRYLFLAASALALAFTSKENAYLIILIF 173 (439)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777899987755432 2335666666666665543 2 23578899999999999866655443
No 21
>COG1287 Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]
Probab=71.72 E-value=95 Score=31.44 Aligned_cols=83 Identities=16% Similarity=0.265 Sum_probs=49.2
Q ss_pred Ccc--CCCCchHHHHHHHhhhhhhhcCCceeeeecCCCCCcchhhhHhHHHHHHHHH----HHHHHHHHHHhhhhhhhhh
Q psy1916 33 PWT--LDYPPLFAFFEYLLSFVAYYFDPQMLDVKNLNYKSSATLLFQRLSVIFTDFV----LVYGVKECADFLTRSKIIK 106 (195)
Q Consensus 33 ~W~--LDYPPl~Ay~~~llg~ia~~~dp~~~~l~s~g~~s~~~~~FmR~tVi~sDll----~~~a~~~~~~~~~~~~~~~ 106 (195)
.|| .|||||+-|--=+.+.+=..+.|.. -+.+++..+.+ .+.+++...|.+.+
T Consensus 80 P~G~~i~~~pl~~~l~~~~~~~~~~~~~~~----------------~~~~~~~~PailG~L~vI~vYl~~r~i~~----- 138 (773)
T COG1287 80 PPGSPIDFPPLFLYLTAALGLILGSIFPVS----------------LETAALLFPAILGVLTVIPVYLLGRRILG----- 138 (773)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHccCchH----------------HHHHHHHhhHHHhhHHHHHHHHHHHHHhc-----
Confidence 488 9999998887777776666666511 12334444543 24566666666644
Q ss_pred hccccCCCCchHHHHHHHHHHhhhHhhhhcccccccchH
Q psy1916 107 HKKWTQDLGSPVVIFQILIIFNAGLFFVDHIHFQYNGFL 145 (195)
Q Consensus 107 ~~~~~~~~~~~~~~~~~l~l~~PgLilIDh~HFQYN~~~ 145 (195)
++....+++++.+.|+ .+-=..=-.|.+=+
T Consensus 139 --------~~~g~~aa~ll~~~p~-~~~rt~~G~~d~~~ 168 (773)
T COG1287 139 --------DKTGLLAALLLALAPG-YLSRTVAGFYDTDM 168 (773)
T ss_pred --------chhhHHHHHHHHHhhH-HHHHhhcCccCCCc
Confidence 2344677777777888 44433333444444
No 22
>TIGR03766 conserved hypothetical integral membrane protein. Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown.
Probab=62.24 E-value=1.5e+02 Score=28.25 Aligned_cols=30 Identities=20% Similarity=0.152 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q psy1916 162 YEGAFWFAVLLNLKHIFIYIAPAYFVFLLR 191 (195)
Q Consensus 162 l~~a~~F~~~LnfKqm~LY~Ap~~F~yLL~ 191 (195)
++++++.+++-.+|+..+-..+|.+++++-
T Consensus 223 Il~gillal~~~iKp~~iI~liA~~i~~~l 252 (483)
T TIGR03766 223 ILLGVLLAIAYFIKPSAIIFVIAIFIVLFL 252 (483)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 578899999999999999999999988764
No 23
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=60.97 E-value=98 Score=31.56 Aligned_cols=110 Identities=16% Similarity=0.111 Sum_probs=61.7
Q ss_pred cccCCCCccCCCCchHHHHHHHhhhhhhhcCCceeeeec--CCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy1916 27 YTDTTSPWTLDYPPLFAFFEYLLSFVAYYFDPQMLDVKN--LNYKSSATLLFQRLSVIFTDFVLVYGVKECADFLTRSKI 104 (195)
Q Consensus 27 Y~~~ts~W~LDYPPl~Ay~~~llg~ia~~~dp~~~~l~s--~g~~s~~~~~FmR~tVi~sDll~~~a~~~~~~~~~~~~~ 104 (195)
|.+++.+--. .|||-++.-=+-|+++. .||++-.... ..+....--.-||...-..-.+.++.++..+|..+.
T Consensus 62 Yl~~~~~fDv-HPPL~kml~al~~~L~g-~~g~f~f~~~g~~~~~~~~~y~~mR~f~A~lgsl~vpl~y~t~r~~~~--- 136 (699)
T COG1928 62 YLNGTPFFDV-HPPLGKMLIALVGGLEG-YDPPFDFQLIGLTEYPFGYNYVGMRFFNALLGSLTVPLVYLIARRIGY--- 136 (699)
T ss_pred hhcCCccccc-CCcHHHHHHHhhhhhhc-cCCCcccccCCcccccCCCChHHHHHHHHHHHhHHHHHHHHHHHHhcc---
Confidence 4445555556 79998876544455544 4555544332 334444456778987776666666666666655543
Q ss_pred hhhccccCCCCchHHHHHHHHHHhhhHhhhhccccc------ccchHHHHHHHHHHHHH
Q psy1916 105 IKHKKWTQDLGSPVVIFQILIIFNAGLFFVDHIHFQ------YNGFLFGVLLLSIARIL 157 (195)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~l~l~~PgLilIDh~HFQ------YN~~~lGl~l~si~~~~ 157 (195)
++ .+++ +.--++++|++|.- -|++++=+.+++++++.
T Consensus 137 ----------s~--l~~~----l~~llv~~dn~~~t~sR~ILLDs~LlfF~~~~~y~~~ 179 (699)
T COG1928 137 ----------SR--LVAA----LAGLLVAFDNSFVTESRFILLDSFLLFFIVAAAYCFL 179 (699)
T ss_pred ----------hH--HHHH----HHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11 2221 11235677887764 35556655566666554
No 24
>PRK13279 arnT 4-amino-4-deoxy-L-arabinose transferase; Provisional
Probab=57.32 E-value=2e+02 Score=28.28 Aligned_cols=117 Identities=10% Similarity=0.046 Sum_probs=61.7
Q ss_pred CCCCchHHHHHHHhhhhhhhcCCceeeeecCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCC
Q psy1916 36 LDYPPLFAFFEYLLSFVAYYFDPQMLDVKNLNYKSSATLLFQRLSVIFTDFVLVYGVKECADFLTRSKIIKHKKWTQDLG 115 (195)
Q Consensus 36 LDYPPl~Ay~~~llg~ia~~~dp~~~~l~s~g~~s~~~~~FmR~tVi~sDll~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 115 (195)
.|-||+.-|...+.-++ +.. ...=+|+...++=++....++...+...+ + +
T Consensus 60 ~eKPPL~yWl~Als~~L---FG~--------------~~~a~RLpsaL~~~lt~llvy~larrl~~------~------r 110 (552)
T PRK13279 60 FEKPIAGYWINSIGQWL---FGD--------------NNFGVRFGSVFSTLLSALLVYWLALRLWR------D------R 110 (552)
T ss_pred CCCCcHHHHHHHHHHHH---cCC--------------CcHHHHHHHHHHHHHHHHHHHHHHHHHhC------C------c
Confidence 48899998766553332 221 11336888877776666666666554432 0 2
Q ss_pred chHHHHHHHHHHhhhHhhhhccccc-ccchHHHHHHHHH---HHHHc----Cc----hhHHHHHHHHHhhhhHHHHHHHH
Q psy1916 116 SPVVIFQILIIFNAGLFFVDHIHFQ-YNGFLFGVLLLSI---ARILE----GN----CYEGAFWFAVLLNLKHIFIYIAP 183 (195)
Q Consensus 116 ~~~~~~~~l~l~~PgLilIDh~HFQ-YN~~~lGl~l~si---~~~~~----~~----~l~~a~~F~~~LnfKqm~LY~Ap 183 (195)
+....+.++++.+|.++.+ +|.- -+..+.....+|+ ....+ ++ .++.++...+++.-|-......|
T Consensus 111 ~~AllAaLIlls~~~v~~~--g~~a~~D~~l~~fi~lal~~f~~~~~~~~~~~~~~~~lllGla~Glg~LTKG~ial~lP 188 (552)
T PRK13279 111 RTALLAALIYLSLFLVYGI--GTYAVLDPMITLWLTAAMCSFWLALQAQTRRGKIGGYLLLGLACGMGFMTKGFLALAVP 188 (552)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 3345555566667766654 4432 1233333333343 33332 11 22334556777888875544445
No 25
>PF14264 Glucos_trans_II: Glucosyl transferase GtrII
Probab=54.02 E-value=1.5e+02 Score=25.83 Aligned_cols=68 Identities=13% Similarity=0.297 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhhHhhhhcccccccch--HHHHHHHHHHHH--HcCc--hhHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy1916 118 VVIFQILIIFNAGLFFVDHIHFQYNGF--LFGVLLLSIARI--LEGN--CYEGAFWFAVLLNLKHIFIYIAPAYFV 187 (195)
Q Consensus 118 ~~~~~~l~l~~PgLilIDh~HFQYN~~--~lGl~l~si~~~--~~~~--~l~~a~~F~~~LnfKqm~LY~Ap~~F~ 187 (195)
..+...+++.+|-.+ ++--|+|++. ++|+++..++.. .+++ .+.|+++-+++++.=|-+.-..+...+
T Consensus 79 ~~l~~~~~~~~P~~~--~~lsy~~~s~~~~ls~~l~~la~~~~~k~~~~~~~~~~ll~~sl~~YQa~~~v~i~l~~ 152 (319)
T PF14264_consen 79 SVLFSLLFISSPFFL--ENLSYRFDSLPMALSLLLAVLAFYFLKKSKIGFLISILLLVLSLGIYQASINVFISLVL 152 (319)
T ss_pred HHHHHHHHHHhHHHH--HHHHHHHccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777788665 7888888865 455554444433 3332 346788888889998888776665553
No 26
>PF04188 Mannosyl_trans2: Mannosyltransferase (PIG-V)); InterPro: IPR007315 This is a family of eukaryotic ER membrane proteins that are involved in the synthesis of glycosylphosphatidylinositol (GPI), a glycolipid that anchors many proteins to the eukaryotic cell surface. Proteins in this family are involved in transferring the second mannose in the biosynthetic pathway of GPI [], [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=50.03 E-value=2.3e+02 Score=26.77 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=54.3
Q ss_pred chHHHHHHHHHHhhhHhhhhccccccc-chHHHHHHHHHHHHHcCchhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhc
Q psy1916 116 SPVVIFQILIIFNAGLFFVDHIHFQYN-GFLFGVLLLSIARILEGNCYEGAFWFAVLLNLKHIFIYIAPAYFVFLLRNH 193 (195)
Q Consensus 116 ~~~~~~~~l~l~~PgLilIDh~HFQYN-~~~lGl~l~si~~~~~~~~l~~a~~F~~~LnfKqm~LY~Ap~~F~yLL~~y 193 (195)
+.+..++++.+++|+=+..-- -|. +...-+.++++....+++.+.++++|+++-...=-.+-.+..+...+++.+
T Consensus 142 ~~a~~a~ll~~~~PasiF~sa---~YsEslf~~lsf~gl~~~~~~~~~~a~~~~~la~~~RsnGll~~~~~~~~~l~~~ 217 (443)
T PF04188_consen 142 KLALLAALLFIFSPASIFLSA---PYSESLFALLSFAGLYLLERGRWWLAGLLFALATLTRSNGLLLAGFFAYELLGIY 217 (443)
T ss_pred HHHHHHHHHHHHccHHHHhhc---CccHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344556677788998654321 244 344456678899999999999999999998888777777777777777654
No 27
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=49.21 E-value=8.7 Score=29.02 Aligned_cols=15 Identities=20% Similarity=0.570 Sum_probs=12.5
Q ss_pred ccchhhHhhhHHHHh
Q psy1916 4 TSTDFEVHRNWLAIT 18 (195)
Q Consensus 4 ~SgDfEaqRhWmeiT 18 (195)
+-+|++.||.||--+
T Consensus 64 r~~~i~~Hr~wM~rs 78 (103)
T PF10067_consen 64 RRGRIAAHRRWMIRS 78 (103)
T ss_pred HhCCHHHHHHHHHHH
Confidence 358999999999864
No 28
>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria. The function is not known.
Probab=45.00 E-value=1.9e+02 Score=24.28 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=47.0
Q ss_pred hhhccccc--------ccchHHHHHHHHHHHHHcC--------chhHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy1916 133 FVDHIHFQ--------YNGFLFGVLLLSIARILEG--------NCYEGAFWFAVLLNLKHIFIYIAPAYFVFLL 190 (195)
Q Consensus 133 lIDh~HFQ--------YN~~~lGl~l~si~~~~~~--------~~l~~a~~F~~~LnfKqm~LY~Ap~~F~yLL 190 (195)
.-|..+|| -|+++.++++|.+....++ ..+++|.+..++++--++.+...|+....+.
T Consensus 94 fS~sfW~~Av~aEVYal~~l~~al~~~l~l~w~~~~~~~~~~r~l~l~afl~GLs~g~H~~~ll~lP~~~~~~~ 167 (178)
T PF11028_consen 94 FSDSFWFQAVEAEVYALSSLFTALLLWLLLKWEREADEPRSDRWLLLIAFLCGLSLGVHLLNLLALPAIALLYF 167 (178)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777 7899999999999887754 2457899999999999999999999876443
No 29
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=39.88 E-value=33 Score=21.04 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=12.6
Q ss_pred HHHHHHHHHHH--HHHhhhc
Q psy1916 176 HIFIYIAPAYF--VFLLRNH 193 (195)
Q Consensus 176 qm~LY~Ap~~F--~yLL~~y 193 (195)
||++|-+|... ++|++++
T Consensus 9 ~i~ly~~l~~~s~~~Li~k~ 28 (29)
T TIGR03063 9 QIGLYAVLFLGSGLFLIRKR 28 (29)
T ss_pred hHHHHHHHHHHHHHHHhhcc
Confidence 67778777766 6777654
No 30
>PHA01514 O-antigen conversion protein C
Probab=33.15 E-value=4.7e+02 Score=25.55 Aligned_cols=121 Identities=15% Similarity=0.257 Sum_probs=67.7
Q ss_pred CccCCCCchHHHHHHHhhhhhhhcCCceeeeecCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccC
Q psy1916 33 PWTLDYPPLFAFFEYLLSFVAYYFDPQMLDVKNLNYKSSATLLFQRLSVIFTDFVLVYGVKECADFLTRSKIIKHKKWTQ 112 (195)
Q Consensus 33 ~W~LDYPPl~Ay~~~llg~ia~~~dp~~~~l~s~g~~s~~~~~FmR~tVi~sDll~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (195)
-|+=|==|+.-+..++++-=.+.+| -+| +|.|++=+++..++....+...+ ++
T Consensus 45 gW~~~GRPlad~l~~~L~~g~~~~D-----------i~P-------LpliLs~~~ls~a~~~l~~~~f~-----~~---- 97 (485)
T PHA01514 45 GWSGNGRPLSDFIFYIINFGTPIID-----------ASP-------LPLMLGIVILALALSCIREKLFG-----DD---- 97 (485)
T ss_pred ChhhcCchHHHHHHHHHcCCCCccc-----------ccc-------HHHHHHHHHHHHHHHHHHHHHcC-----Cc----
Confidence 5888888999999888864233344 122 23344444444443333332221 01
Q ss_pred CCCchHHHHHHHHHHhhhHhhhhcccccccchHHHHHHHHHH----HHHcCc---hhHHHHHHHHHhhhhHHHHHHHHH
Q psy1916 113 DLGSPVVIFQILIIFNAGLFFVDHIHFQYNGFLFGVLLLSIA----RILEGN---CYEGAFWFAVLLNLKHIFIYIAPA 184 (195)
Q Consensus 113 ~~~~~~~~~~~l~l~~PgLilIDh~HFQYN~~~lGl~l~si~----~~~~~~---~l~~a~~F~~~LnfKqm~LY~Ap~ 184 (195)
......+.+.++.|| ....+..|+|+|...++.+.... +..+.+ .++++++=.+++|+=|-.+-.-..
T Consensus 98 --~~~~~L~~~~l~~NP--ffLqNLSYrfDsl~Malsv~lsi~~~~l~~~~~~~~~~~~~il~~~~l~lYQ~s~nIfi~ 172 (485)
T PHA01514 98 --YITASLCFMMILANP--FFIENLSYRYDSLTMCMSVAISIISSYVAYQYKPINIIISSILTIAFLSLYQAALNTYAI 172 (485)
T ss_pred --hHHHHHHHHHHHhCH--HHHhhhhhccCcHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112344555666688 56799999999977666443322 223332 335666556678888876654443
No 31
>PF09913 DUF2142: Predicted membrane protein (DUF2142); InterPro: IPR018674 This family of conserved hypothetical proteins has no known function.
Probab=30.57 E-value=4e+02 Score=23.88 Aligned_cols=119 Identities=19% Similarity=0.250 Sum_probs=68.1
Q ss_pred CCchHHHHHHHhh-hhhhhcCCceeeeecCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCc
Q psy1916 38 YPPLFAFFEYLLS-FVAYYFDPQMLDVKNLNYKSSATLLFQRLSVIFTDFVLVYGVKECADFLTRSKIIKHKKWTQDLGS 116 (195)
Q Consensus 38 YPPl~Ay~~~llg-~ia~~~dp~~~~l~s~g~~s~~~~~FmR~tVi~sDll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (195)
|||+. |.=-.+| ++|+.++++ -......+|+--++.-.+..+.+.+..+ +
T Consensus 95 y~p~~-Ylp~alGi~ig~ll~l~----------~~~~~~l~Rl~nll~~~~l~~~Ai~~~p------------------~ 145 (389)
T PF09913_consen 95 YPPLY-YLPQALGIWIGRLLGLS----------VLVMYYLGRLFNLLLYALLVYLAIKLAP------------------R 145 (389)
T ss_pred CCcHh-hHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHcc------------------h
Confidence 88864 4444444 567777743 2344677888777665554433322221 1
Q ss_pred hHHHHHHHHHHhhhHhhhhcccccccchHHHHHHHHHHHHHc-C-------c-hhHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy1916 117 PVVIFQILIIFNAGLFFVDHIHFQYNGFLFGVLLLSIARILE-G-------N-CYEGAFWFAVLLNLKHIFIYIAPAYFV 187 (195)
Q Consensus 117 ~~~~~~~l~l~~PgLilIDh~HFQYN~~~lGl~l~si~~~~~-~-------~-~l~~a~~F~~~LnfKqm~LY~Ap~~F~ 187 (195)
.+.. .+++.+.|--+-. -+-+.|+++..++..+.++++.+ . | .+..++...++..-|-.++-.++..+.
T Consensus 146 ~k~l-~~~i~l~Pm~~~~-~aS~s~D~~~~~~~~l~~a~~l~~~~~~~~~~~~~~~l~v~~~ll~~~K~~y~~l~~l~l~ 223 (389)
T PF09913_consen 146 GKWL-LALIALLPMTLFQ-AASVSYDGLIIALAFLFIALLLRLYRKKKITRRDLILLGVLAVLLALSKPPYIPLLLLLLL 223 (389)
T ss_pred hHHH-HHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 3444555643332 45788999999999998887766 1 1 235566666677889544444444333
No 32
>KOG3893|consensus
Probab=30.21 E-value=1.2e+02 Score=28.82 Aligned_cols=74 Identities=9% Similarity=0.155 Sum_probs=59.3
Q ss_pred chHHHHHHHHHHhhhHhhhhcccccccchHHHHHHHHHHHHHcCchhHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy1916 116 SPVVIFQILIIFNAGLFFVDHIHFQYNGFLFGVLLLSIARILEGNCYEGAFWFAVLLNLKHIFIYIAPAYFVFLL 190 (195)
Q Consensus 116 ~~~~~~~~l~l~~PgLilIDh~HFQYN~~~lGl~l~si~~~~~~~~l~~a~~F~~~LnfKqm~LY~Ap~~F~yLL 190 (195)
+++.+....-++||=..+|.. --.=.|++--++++-++.+.+++...||+...+++++|=-=+-|.||++.++.
T Consensus 125 ~~a~~~~~fWLlNPl~aiISt-RGNaesi~~~lvi~~lyllqK~~v~~A~l~~GlaIh~KIYPliY~l~i~l~ls 198 (405)
T KOG3893|consen 125 KQALIYASFWLLNPLTAIIST-RGNAESIVAFLVILTLYLLQKSEVFLAGLAHGLAIHLKIYPLIYSLAIYLSLS 198 (405)
T ss_pred hhhhHhhhhhhcCchheeeec-CCchHHHHHHHHHHHHHHHHHhHHHHHHHHhhheeeeEechHHhhhhhheEEe
Confidence 344566667788998877753 33445777788888899999999999999999999999988999999887654
No 33
>PF02516 STT3: Oligosaccharyl transferase STT3 subunit; InterPro: IPR003674 N-linked glycosylation is a ubiquitous protein modification, and is essential for viability in eukaryotic cells. A lipid-linked core-oligosaccharide is assembled at the membrane of the endoplasmic reticulum and transferred to selected asparagine residues of nascent polypeptide chains by the oligosaccharyl transferase (OTase) complex []. This family consists of the oligsacharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosccharyl transferase (OTase) complex of proteins and is required for its activity [].; GO: 0004576 oligosaccharyl transferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 3AAG_B 2ZAI_D 2ZAG_A 3RCE_A.
Probab=28.39 E-value=3e+02 Score=25.24 Aligned_cols=17 Identities=29% Similarity=0.835 Sum_probs=9.5
Q ss_pred CCCCchHHHHHHHhhhh
Q psy1916 36 LDYPPLFAFFEYLLSFV 52 (195)
Q Consensus 36 LDYPPl~Ay~~~llg~i 52 (195)
.++||+..+..-...++
T Consensus 68 i~~~pl~~~l~~~~~~~ 84 (483)
T PF02516_consen 68 IDWPPLFPYLTAAFYAI 84 (483)
T ss_dssp --TT-HHHHHHHHHHHS
T ss_pred cCcccHHHHHHHHHHHH
Confidence 68999998884444443
No 34
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=27.67 E-value=26 Score=25.66 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=17.3
Q ss_pred hcCCCCcccccCCCCccCCCCchH
Q psy1916 19 NSLPLSQWYTDTTSPWTLDYPPLF 42 (195)
Q Consensus 19 ~~LPi~~WY~~~ts~W~LDYPPl~ 42 (195)
.+||+| ||-|+|--|.|-=+-++
T Consensus 9 ~sLPis-wYcN~TRLlRlt~~Tlt 31 (71)
T PF11049_consen 9 ASLPIS-WYCNGTRLLRLTQQTLT 31 (71)
T ss_pred CCCccc-EEECCceeeeecCCeEe
Confidence 578886 99999987777655544
No 35
>PF10959 DUF2761: Protein of unknown function (DUF2761); InterPro: IPR024249 Members of this family of proteins are annotated as KleF [,]. Their function is known.
Probab=26.89 E-value=27 Score=26.51 Aligned_cols=14 Identities=36% Similarity=1.085 Sum_probs=12.2
Q ss_pred CcccccCCCCccCC
Q psy1916 24 SQWYTDTTSPWTLD 37 (195)
Q Consensus 24 ~~WY~~~ts~W~LD 37 (195)
.-||.....+||||
T Consensus 32 aywysaqseewgld 45 (95)
T PF10959_consen 32 AYWYSAQSEEWGLD 45 (95)
T ss_pred ceeecccchhcCCC
Confidence 46998888999999
No 36
>KOG4290|consensus
Probab=24.81 E-value=1.4e+02 Score=28.69 Aligned_cols=56 Identities=25% Similarity=0.364 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCchHHHHHHHHHHhhhHhhhhcccccccch
Q psy1916 83 FTDFVLVYGVKECADFLTRSKIIKHKKWTQDLGSPVVIFQILIIFNAGLFFVDHIHFQYNGF 144 (195)
Q Consensus 83 ~sDll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~PgLilIDh~HFQYN~~ 144 (195)
..|++++|.++.+.+.... + ++. .++...........+.+.|++.---+||-|||+
T Consensus 174 fll~llvY~vL~~iq~~av----~-rkm-~P~~~il~vlvtm~lv~~~licanllhfa~dG~ 229 (429)
T KOG4290|consen 174 FLLMLLVYMVLVLIQGLAV----T-RKM-LPSWLILLVLVTMFLVQAGLICANLLHFAKDGF 229 (429)
T ss_pred HHHHHHHHHHHHHHHHHHH----h-ccc-CchHhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4566777777766554432 1 111 111122223333456688999999999999996
No 37
>COG4291 Predicted membrane protein [Function unknown]
Probab=20.39 E-value=2.7e+02 Score=24.61 Aligned_cols=44 Identities=23% Similarity=0.422 Sum_probs=33.2
Q ss_pred CccCCCCch-------HHHHHHHhhhhhhhcCCceeeeecCCCCCcchhhhHhHHHHHHHHHH
Q psy1916 33 PWTLDYPPL-------FAFFEYLLSFVAYYFDPQMLDVKNLNYKSSATLLFQRLSVIFTDFVL 88 (195)
Q Consensus 33 ~W~LDYPPl-------~Ay~~~llg~ia~~~dp~~~~l~s~g~~s~~~~~FmR~tVi~sDll~ 88 (195)
+=|+|.||. |.|+++..|.-++.-| ..-+..=||-.|+.=-++.
T Consensus 158 ~rg~~fp~~~~P~g~DFLYfs~vIgMTaQtsD------------tnitT~aMRr~~L~hsilS 208 (228)
T COG4291 158 KRGLDFPETPEPDGWDFLYFSFVIGMTAQTSD------------TNITTTAMRRVVLLHSILS 208 (228)
T ss_pred cCCCCCCCCCCCCccchhhhhHhhhhheeccc------------cccCcHHHHHHHHHHHHHH
Confidence 566777776 7899999998888777 3444556998888877763
Done!